LOCUS       DASYFY010000001         4954 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_630736, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000001 DASYFY010000000
VERSION     DASYFY010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630736"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..511
                     /locus_tag="VGN19_00005"
     CDS             161..511
                     /locus_tag="VGN19_00005"
                     /inference="COORDINATES: protein motif:HMM:NF024857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEV7194296.1"
                     /translation="MTVIQRPLTVGASRPLRARHSDRGRLWVVDLVGEADLATCELLE
                     AELHLATGMGRESVVLDLTRLRFCDVYCARLILAAASTVAGATGPVRRVFEFLDPLQR
                     VPRYQGITDATAKH"
     gene            622..1356
                     /locus_tag="VGN19_00010"
     CDS             622..1356
                     /locus_tag="VGN19_00010"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HEV7194297.1"
                     /translation="MSDPGERQDRLLRLIDAEAPAVDIDGVDGRLDRICRAAARHLPA
                     DGAGITIMDSDGRPAGTIAASNSRFRQLEELQFTLGEGPCVEAYAARRPVLEPSVAVS
                     GMRRWPGYAPAAHEQGVNAVFAFPIQIGAARLGVLDVYRYEAVPLAPDALRDALGFAH
                     LCLDTLLSREGVGPGGESADRWGDTLRLSSEAYQAQGFIMVQLGVSLADAMVWLRAHA
                     YAANRPIVEVAREVLEGKIVFTRDDL"
     gene            1403..2146
                     /locus_tag="VGN19_00015"
     CDS             1403..2146
                     /locus_tag="VGN19_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HEV7194298.1"
                     /translation="MSRISSERLAETFVQVADTLVDDFDLIDFLTLLTERAAELAGSS
                     ASGLLLSDEQGHLQFMAASQESARILELFQVQREEGPCQDCFREGRPVTDTDLERATE
                     RWPQFAPRAVAAGFRSVHAFPLRHKQTIIGALNLFDAKPQQFIDSDASVLQALADVAT
                     IGILQERAIRRGEVLTEQLQRALNTRITIEQAKGALAHIHGTHPDAAFEMLRDYSRRH
                     HYRLSDVAVAVLHDPTAHPVLTTRSLTGP"
     gene            2387..4468
                     /locus_tag="VGN19_00020"
     CDS             2387..4468
                     /locus_tag="VGN19_00020"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012880013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HEV7194299.1"
                     /translation="MDYGDFASAYRHGFARVAACTLPVAEADPARNAESVIEQVRALH
                     DDGVALAIFPELGLSGYAIDDLLMQDVLLEAVDTAVVTIAKATRSLLPVVVVGAPLRH
                     GNRLFNCAVVIHRGSVLGIAPKSFLPNYREFYEKRHFAPGDDTRGDWFQAPHWPGADE
                     DGDLPFGPDLIFEAQDVPGLALHVEVCEDMWVPVPPSAKAALAGATVLGNLSASPITV
                     GRAEDRHLMARSASARCTAAYLYAAASAGESSTDLSWDGMTMVYELGALLGQSERFPD
                     GPAATVVDVDLDWIRQERLRQGTFDDNRRAELVDAAEGVDFRTIGFLLRPPTGDIGLR
                     RTVDRFPFVPDDAARLSLDCYEAYNIQVSGLEQRLRAIGGPKLVIGVSGGLDSTQALI
                     VAAKAMDRLGRPRSDILGFTLPGFATSETTKANAIHLMESLGVTWQEVDIRPAATQLL
                     KDLDHPFGSGEEVYDVTFENVQAGLRTDFLFRAANQRGGIVLGTGDLSELALGWCTYG
                     VGDQMSHYGVNAGVPKTLMQHLIRWAVSHGEFEGDVNETLAAILDQEISPELVPAKEG
                     EPLQSTEAVVGPYALQDFTLYYVLRRGYRPSKIAFLAWHAWRDGDCGNFPPGYPEGQR
                     PAYDLPTIRHWLEVFVRRFFANQFKRSALPNGPKVHGGGSLSPRGDWRMPSDASSRAW
                     LAELSANVPEG"
     gene            complement(4500..>4954)
                     /locus_tag="VGN19_00025"
     CDS             complement(4500..>4954)
                     /locus_tag="VGN19_00025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194300.1"
                     /translation="APATREQLAVEVMRTRLALELARADAHRAKGVSGVLPARFAVAL
                     STGNAAQAEHRRAQARAQEATRCTDIVGGHAFTITRTGATGGGMTMEIYSCTLARHVT
                     LSVSGPGSGWTAQLVDPHARWGSRETVLLGADPWESLHWACDWVTASP"
BASE COUNT          755 a         1735 c         1659 g          805 t
ORIGIN      
        1 tcggggtatc ggggtattgg ggtatttggt gtcatcgggt tccgggccca gaaggctgcc
       61 gaatagacag gtcgcgctcc tcctgctcag gtcggcgaat cgggcgtagt ctgaagtgac
      121 agtgccccgg accccggccg cttccagcgc cggaggtccg atgaccgtca tccaacgccc
      181 gctcacagtg ggtgcatcgc gccccctgcg ggcccggcac tccgaccgag ggcggctgtg
      241 ggtggtggac cttgttggtg aggccgacct ggcgacctgc gagcttctcg aggcagaact
      301 gcacctcgcg accgggatgg gccgcgagag cgtcgttctc gatctgaccc gcctccggtt
      361 ctgcgacgtc tactgtgccc gactgattct ggccgccgcc agtacggtgg cgggcgcgac
      421 cgggccggtc cgacgcgtct tcgagttcct cgacccgctc cagcgcgtgc ctcgctatca
      481 ggggatcaca gacgcgacgg ccaagcacta gacgcgtgcg ttgccttcac tagccgtagg
      541 cttcgcgggt ctgaagacgg tggtccggag cgaggggatg cggccaatgc actcgtgcac
      601 ggcacggtcg cgaccacgcc catgagcgac cccggggagc ggcaggaccg cctgctcagg
      661 ctcatcgacg cagaggcccc cgccgtcgac atcgacggtg tcgatggtcg tctcgaccga
      721 atctgccggg ctgcggcgcg ccaccttccc gccgatggtg cgggcatcac catcatggat
      781 tctgacggtc gcccagcggg cacgatcgct gcctccaact ctcggttccg ccaactcgag
      841 gagctccagt tcacgttggg ggaaggtccg tgtgtcgagg cgtatgccgc gcgccgtccc
      901 gtcctcgagc cgagcgtggc ggtcagcggc atgcgccgct ggcccggata cgcccccgcg
      961 gcccacgagc agggtgtgaa cgccgtcttc gccttcccca tccagatcgg tgccgcccgg
     1021 ctcggagtgc ttgacgtcta tcggtacgag gcggtcccgc tcgcgccgga cgccttgcgc
     1081 gatgctctgg gcttcgcaca cctctgcctg gacaccctcc tgagcaggga aggcgtgggg
     1141 cccggcggcg agtctgccga caggtggggt gacaccctcc gcctcagttc cgaggcctac
     1201 caggcgcagg gtttcatcat ggtgcagctg ggggtgtcac tagctgacgc catggtgtgg
     1261 ctgcgcgccc acgcctatgc cgccaatcga cccatcgtgg aggtcgcacg agaggttctc
     1321 gagggtaaga ttgtttttac gcgggacgac ctgtgagcgg ggcaaggtca cgcgtcatcg
     1381 cggcgtcgac gggagtctct gaatgagccg catttctagc gagcgactgg ccgagacgtt
     1441 cgttcaggtg gccgacaccc ttgtcgacga cttcgacctc atcgactttc tcaccctcct
     1501 gaccgagcgg gccgccgagc tggctggctc gtccgcctca ggacttctgc tcagcgacga
     1561 gcaagggcac cttcagttca tggcggcgtc ccaggagtcg gccaggatct tggagctctt
     1621 ccaggttcag cgcgaggaag gcccctgcca ggactgcttc cgcgagggtc ggcctgtgac
     1681 ggacaccgac ctcgagcggg ccaccgagcg atggccacag ttcgcccccc gggcggtggc
     1741 agcggggttc cgatccgtgc acgccttccc cctgcgccac aagcagacca tcatcggggc
     1801 cctgaacttg ttcgacgcga agccccagca attcattgac tccgatgcca gcgtcctgca
     1861 ggccctcgcc gacgtggcca ccatcgggat cttgcaggag cgggccatcc ggcgcggcga
     1921 agtgctgacc gaacagctcc aacgggcact caacaccagg atcaccatcg agcaggccaa
     1981 gggggccctg gcacatatcc atgggaccca cccagacgcg gcgttcgaga tgctccgcga
     2041 ctacagccgg aggcaccact accggctcag cgacgtcgcc gtggccgtac tgcatgaccc
     2101 gactgcccac ccggtgctga cgacgcggtc cctgaccggg ccctagaagg accgtccgca
     2161 gggctttctg tcaccttctc aaccgggagg cacaggcgta gagttgttgc gctgccccgg
     2221 accatggtcg ccagatcctg cccggggcat cgaagcgccg ggggtcgtct ggtccgaagc
     2281 agtcagggcg caccccctcc cgtacgcccc ccacacaccg cggtcgaggg ggatgcgctc
     2341 tgccgggagc gctacctgtt gtcgtgtcaa ctgacagact cagggcatgg actacgggga
     2401 cttcgcgtct gcctaccggc acgggttcgc ccgagttgcc gcgtgcaccc tgcccgttgc
     2461 ggaggccgac ccagcccgca acgccgagtc ggtgatcgag caggtccgtg ccctgcacga
     2521 cgacggggtc gcgctcgcga tcttccctga gctaggcctg tccggatatg ccatcgacga
     2581 cctgctgatg caggacgtcc tgctcgaggc cgtagacacg gccgtcgtta cgattgccaa
     2641 ggccaccagg tccctgctgc ccgtcgtcgt ggtcggggca ccgttgcgcc atggcaaccg
     2701 cctgttcaac tgcgcggtcg tcatccatcg cggcagcgtc ctcggcatcg ctccgaagtc
     2761 gttcctgccc aactatcgcg agttctacga gaagcgtcat ttcgcacccg gcgacgacac
     2821 ccgaggcgac tggttccagg ctccgcactg gccgggcgcc gacgaggacg gcgacctgcc
     2881 attcggtccg gacctcatct tcgaagccca ggacgtgcca ggtctcgccc tccacgtcga
     2941 ggtgtgcgag gacatgtggg taccggtccc acccagcgcg aaggccgccc tcgcgggggc
     3001 caccgtgctc ggcaacctgt ccgcttcccc gatcacggtg ggtcgcgccg aggaccgcca
     3061 cctcatggcc cgctcggcga gtgcgcggtg caccgcggca tacctgtatg ccgccgcgtc
     3121 cgccggcgag tcctcgacgg acctgtcatg ggacggcatg acgatggtct acgaactggg
     3181 ggcgctgctc ggtcagagcg aacgtttccc ggatggcccg gctgccaccg tcgtcgatgt
     3241 cgacctcgac tggatccggc aggagcggct gcgccagggg acgttcgacg acaaccgccg
     3301 tgccgagctg gtcgatgcgg ccgagggggt cgacttccgc accatcgggt tcctgctgcg
     3361 cccaccgacc ggagacatcg gactgcgacg cacggtcgac cggttcccgt tcgtgcccga
     3421 cgacgcggcc cggctgagtc tcgactgcta cgaggcgtac aacatccagg tgtccggcct
     3481 cgaacagcgg ctccgggcga tcggcggccc gaagctggtg atcggggtca gcggaggtct
     3541 cgactccacc caggcgctga tcgtggcagc caaggcgatg gaccgtctgg gacgcccccg
     3601 cagcgacatc ctcggcttca ccctgcccgg ctttgccacg agcgagacca ccaaggccaa
     3661 cgccattcac ctcatggagt cgctcggcgt gacctggcag gaggtcgaca tccggccggc
     3721 ggcgacccag ctgctcaagg acctcgacca cccgttcggc agcggcgagg aggtctatga
     3781 cgtgacgttc gagaacgtcc aggcgggcct tcgcaccgac ttcctcttcc gggcggccaa
     3841 ccagcgtggc gggatcgtcc tgggcacagg agacctgtcc gagctcgccc tggggtggtg
     3901 cacctacggc gtcggcgacc agatgtcgca ctatggcgtc aacgccgggg tcccgaagac
     3961 gctgatgcag catctgatcc gctgggccgt cagccatggc gagttcgagg gcgatgtcaa
     4021 cgagaccctg gctgcgatcc tcgaccagga gatcagcccg gagctcgtgc cggccaagga
     4081 gggtgagccg ctgcagagca ccgaagccgt cgtgggcccg tacgccctgc aggacttcac
     4141 gctctactac gtgctgaggc gcggctaccg tcccagcaag atcgccttcc ttgcctggca
     4201 tgcctggcgc gatggcgact gcggcaactt ccctccgggg taccccgagg gccagcgccc
     4261 ggcatacgac ctgcccacga tccggcactg gctggaggtg ttcgtgcggc gcttcttcgc
     4321 caaccagttc aagcgctccg cgcttcccaa cgggcccaag gtgcacggcg ggggctcctt
     4381 gtcgccccgc ggggactggc gtatgccgtc cgacgccagc tcgcgcgcgt ggctcgctga
     4441 gctcagcgcg aacgtccccg agggctgact gccggggcgt ctcagtgccc ggccgtcgct
     4501 cacggcgagg cggtcaccca gtcgcaggcc cagtgcagcg actcccaggg atccgcgccc
     4561 agcagaacgg tctcgcgact gccccagcgt gcgtgcgggt cgaccagctg cgcggtccag
     4621 cccgagccgg gtcccgaaac ggacagggtg acgtggcggg ccagcgtgca cgagtagatc
     4681 tccatggtca ttccgcctcc cgtcgcgccc gttcgcgtga tcgtgaaggc atgcccaccc
     4741 acgatgtcgg tgcagcgggt cgcctcctgg gcacgagcct gggctcggcg atgttcggcc
     4801 tgggcagcgt tgccggtcga caaggctacg gcgaaccggg ccgggaggac cccagagacg
     4861 cccttggccc ggtgggcgtc cgctcgagcc agctcaagag ccagccgggt ccgcatcacc
     4921 tcgacggcca gctgctctcg ggtggccggg gcgg
//
LOCUS       DASYFY010000002         2253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1156349, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000002 DASYFY010000000
VERSION     DASYFY010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156349"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..935
                     /locus_tag="VGN19_00030"
     CDS             <1..935
                     /locus_tag="VGN19_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194301.1"
                     /translation="SNVRVDVMTALVSFERVFEVLDLQPLITQKPGAQPLPAGPAAVE
                     LDGVAFRYPSADEVSLASLESTAAGDRKGSGVVLRDISFDVRPGELVALVGPSGAGKT
                     TITNLVARLYDPSAGAVRINGMDLRDATLESVHRVVGVVTQEAHLFHDTIRANLAYAD
                     PTATEQDMAEALRAAQVWPLVSSLPEGLDTVVGDRGHRLSGGEKQRLALARLLLKGPG
                     LLVLDEATAHLDSESEAAVQRALDTALEGRTALVIAHRLSTVRGADQILVVDDGRIVE
                     RGTHRELMTRGGLYADLYTTQFADQESAGSGIPA"
     gene            complement(987..1775)
                     /locus_tag="VGN19_00035"
     CDS             complement(987..1775)
                     /locus_tag="VGN19_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HEV7194302.1"
                     /translation="MLRVLISRRWLAAFAVALAFAVAAFFLGRWQWHRYEAKAARADR
                     INAHYDARPRALSDVLGSSPLPLAADWTRVTTHGRYAVNETLLVRNRPLDSTYGYEVI
                     VPLVTDAGVVMVDRGWVANAQNAETLPDYPAAPTDDVTVTGWLRQGEPSLSRNLPQGQ
                     VASISLADASRALGRPLMGGYVILQSERLADGSTPARPTPLAAPDTDLGPHQAYAFQW
                     WFGMAAGFALVFLGARREYLDGEPESVKSARKPAKVRIWDEEDG"
     gene            1808..>2253
                     /locus_tag="VGN19_00040"
     CDS             1808..>2253
                     /locus_tag="VGN19_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEV7194303.1"
                     /translation="MTGLPFPIVRGETPVPRGTRLPDQFGRVARDLRVSVTDRCNLRC
                     QYCMPAEGLPWLAKPEMLTDDELVRLVGIFVALGVEQIRLTGGEPLLRRSLVDVVRSI
                     ARLEPRPRIAMTTNGIGLDRMAPPLAEAGLDRVNVSLDTIDPQEFA"
BASE COUNT          326 a          804 c          797 g          326 t
ORIGIN      
        1 tctcgaacgt ccgtgtcgac gtcatgacgg ccctggtgtc gttcgagcgg gtcttcgaag
       61 ttctcgacct gcagccgctg atcacccaga agccgggcgc gcagccgctc cctgcgggcc
      121 ccgcggcggt cgagctcgac ggggtggcct tccgctaccc ctcggccgac gaggtctcgc
      181 tggcctccct cgagagcacc gctgcgggcg accgcaaggg ctcgggtgtg gtcctgcgcg
      241 acatctcgtt cgacgtccgt cccggtgagc tggttgccct ggtggggccg agcggggcgg
      301 gcaagaccac catcaccaac ctcgtggcac ggctctacga cccctcggcg ggcgctgtgc
      361 ggatcaacgg catggacctg cgcgacgcga ccctcgagtc cgtgcaccgc gtggtgggag
      421 tggtcaccca ggaggcacac ctcttccacg acacgatccg ggcgaacctg gcctacgccg
      481 atcccaccgc gaccgagcag gacatggccg aggcactgcg ggcagcccag gtgtggccgc
      541 tcgtgagctc gctgccggag ggtctcgaca cggtggtggg cgaccgcggg caccggctgt
      601 cggggggcga gaagcagcgg ctcgccctcg ctcggctgtt gctcaagggg cccggcctgc
      661 tggtgctgga cgaggccacc gcgcacctcg acagcgagtc cgaggccgcc gtgcagcgcg
      721 ccctggacac cgcgctggag ggacgcacgg cgctcgtgat cgctcaccgg ttgtcgacgg
      781 tccgtggtgc cgaccagatc ctcgtggtcg acgacggccg catcgtggag cggggtaccc
      841 accgcgagct catgacccgc ggcggcctgt atgccgacct ctacaccacg cagttcgccg
      901 accaggagag cgccggctcc ggcatccccg cctgagtgag cccgcagcac ccgtcttcgg
      961 cggccgtcac gttgccgggg gacgacctag ccgtcctcct cgtcccagat gcggaccttg
     1021 gcaggcttgc gcgcgctctt gacgctctcc ggctcgccgt cgaggtactc gcgacgggcg
     1081 ccgagaaaca ccagcgcgaa acccgcggcc atgccgaacc accactggaa ggcataggcc
     1141 tggtgcgggc cgaggtcggt gtcgggcgcc gccagcggcg tgggccgcgc cggggtcgac
     1201 ccgtccgcca gccgctcgga ctggaggatg acgtagcccc ccatcagggg cctgcccagt
     1261 gcgcgggagg catcggcgag gctgatgctg gccacttgac cctggggcag gttgcgcgag
     1321 agggagggtt caccctgccg cagccagccc gtgacggtca cgtcgtccgt gggcgctgcg
     1381 gggtagtcag ggagggtctc ggcattctgc gcgttggcca cccatccccg gtccaccatc
     1441 accaccccgg catcggtgac gagcggaacg atcacctcgt acccgtaggt gctgtcgagt
     1501 ggccggttgc ggaccaggag cgtctcgttc acggcatacc ggccgtgcgt ggtcacccgc
     1561 gtccagtccg cggcgagcgg caggggcgag gagccgagga cgtcggacag tgcgcggggc
     1621 cgcgcgtcgt agtgcgcgtt gatgcggtcg gcacgcgccg ccttggcctc gtaacggtgc
     1681 cactgccagc ggcccaggaa gaatgccgcc accgcgaacg ccagggcgac agcgaaggca
     1741 gcgagccatc gccgcgatat gagcaccctg agcaccgaat cacggtaccc ggcctaggct
     1801 ggggctcatg accggcctgc cattccccat cgtgcgcggc gaaacgcccg tgccgcgggg
     1861 cacccggctg cccgaccagt tcggacgggt ggcgcgcgac ctgcgcgtct cggtcaccga
     1921 ccgctgcaac ctgaggtgcc agtactgtat gccggccgaa gggctgccgt ggctggcgaa
     1981 gcccgagatg ctcaccgacg acgagctcgt gcgactggtc gggatcttcg tcgccctggg
     2041 ggtggagcag atccggctga ccggtggcga gccgctgctc cggcgctccc tcgtcgacgt
     2101 cgtccgtagc atcgcccgcc tcgagccacg accccgtatt gcgatgacca ccaacgggat
     2161 cggtctcgat cggatggccc caccccttgc cgaagcggga ctcgaccggg tgaacgtcag
     2221 cctcgacacc atcgacccgc aggagttcgc cga
//
LOCUS       DASYFY010000003         5595 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_683373, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000003 DASYFY010000000
VERSION     DASYFY010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683373"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VGN19_00045"
     CDS             complement(<1..365)
                     /locus_tag="VGN19_00045"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7194304.1"
                     /translation="MMVDDIQRIQLGTFVRPAQETTTGQPRVEAVYGYLVRTTAGLLL
                     MDSGLGEADPGTDAWYRPRRVDIGEALRSAGSSVEDIDMVINCHLHFDHIGGNPQFPR
                     RPIFCQRLELDTARTDAYTV"
     gene            418..1053
                     /locus_tag="VGN19_00050"
     CDS             418..1053
                     /locus_tag="VGN19_00050"
                     /inference="COORDINATES: protein motif:HMM:NF016149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance CopC family protein"
                     /protein_id="HEV7194305.1"
                     /translation="MPRTTPPPRNRLRSGLGLTLILFVLGLVSVVTAGVADAHTHLVK
                     ITPALGVTLTTPPSAVVLTFSEPVGTGFATVRVTDGSGRDVGAGPAQIAGAVVTQPLT
                     SNLASGPYAVAFRVVSSDGHPVADVSAFTLAVAGRVGPTPSPSAFTTSGPSSAASPRP
                     DPHAAGHPGSTADVDPATTRLRRLAMAVGVGALALSIGTSMVVLSRRATRA"
     gene            1111..1186
                     /locus_tag="VGN19_00055"
     tRNA            1111..1186
                     /locus_tag="VGN19_00055"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1144..1146,aa:Lys,seq:ctt)
     gene            complement(1484..1945)
                     /locus_tag="VGN19_00060"
     CDS             complement(1484..1945)
                     /locus_tag="VGN19_00060"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7194306.1"
                     /translation="MAGNDESSEGAVIVVGFDHHEPALVALRFAAKLAIALDEHLRVV
                     HVLDVSDAYPDPDADHWEQLTAGRVREVQEVAANALAGSGCRWSYDARRGPVAGELLS
                     AAREANATMLVLGAARAGHAAALVHLVDRPVLPHLLHGHLEVPILIVPSVD"
     gene            complement(1932..2537)
                     /locus_tag="VGN19_00065"
     CDS             complement(1932..2537)
                     /locus_tag="VGN19_00065"
                     /inference="COORDINATES: protein motif:HMM:NF017747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HutD family protein"
                     /protein_id="HEV7194307.1"
                     /translation="MSSTVQAPKVVRLGECASVAWRNGAGNTRVMAQDPADAAYDDFS
                     WRVSLAEIARSGPFSSFAGVQRQFVALGEHGLTLTVDGRPHPLSMFDTISFPGEAKTS
                     CDLPAGVTASALNVMARAGWATAEITMLTDVAGIELVAPARGHLLVVALEAGCTADGV
                     GELGRLDAIWCREGHRLRATAVGRLLVVTFHSREGDGGGRE"
     gene            2940..3425
                     /locus_tag="VGN19_00070"
     CDS             2940..3425
                     /locus_tag="VGN19_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase"
                     /protein_id="HEV7194308.1"
                     /translation="MTVITTAGTAGVNRFTRNQLLRTARLFATDPHLRDLVDLASGQR
                     TWHRLDATEHLEIWLIAWPVGSSTGWHDHLESEGAFLTVEGELAEQSWSAGQTQERYL
                     WEGEGRSFGAHHLHTVSNLGDRPALSVHVYSPALRGMTRYAIIGNRLRQTSVERAGER
                     W"
     gene            3422..3895
                     /locus_tag="VGN19_00075"
     CDS             3422..3895
                     /locus_tag="VGN19_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010550117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEV7194309.1"
                     /translation="MSAATAPTAAHWETQLFSEGRGSQAPVYDGVDDQLADARSRLVR
                     VSARAAYQEALYRRAVLVDIRPAAQRAAEGEIAAQLEPLTVERNVLEWRFDPRHEFRL
                     PQAGYDTRVLVLCQEGYTSSLAADALVRLGVRRATDVIGGFRAWREAGLPTTRAR"
     gene            complement(3939..4235)
                     /locus_tag="VGN19_00080"
     CDS             complement(3939..4235)
                     /locus_tag="VGN19_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEV7194310.1"
                     /translation="MLHDRVLVSLDGERGERRSGGGIVIPATASVGKRLAWATVVAVG
                     PNVRQVKVDDRVLFDPEDRAEVELKTKDYVLLRERDIHAVAAPRVQDGQTGLYL"
     gene            complement(4264..4530)
                     /locus_tag="VGN19_00085"
     CDS             complement(4264..4530)
                     /locus_tag="VGN19_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3618 domain-containing protein"
                     /protein_id="HEV7194311.1"
                     /translation="MSDEATKSLDQLEAEIVAARTRLAGTVNELHARTAPREIVRREV
                     ASLKLRFYTATHTEAGDLRVERVAAVVATAVALLGLGAWRRHRG"
     gene            complement(4599..5069)
                     /gene="bcp"
                     /locus_tag="VGN19_00090"
     CDS             complement(4599..5069)
                     /gene="bcp"
                     /locus_tag="VGN19_00090"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011692387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEV7194312.1"
                     /translation="MTERLSPGDTAPDFTLPDDKGGEVSLSSLRGRKVIVYFYPAAMT
                     PGCTTQACDFSDNINTLHQEGYEVLGISPDSPSKRAKVRAKDGLTITLLSDADRSVMN
                     AYSAFGEKKLYGKTVEGVIRSTVVVGEDGTVSHAFYNVKATGHVAKLRRDLGLA"
     gene            complement(5147..>5595)
                     /locus_tag="VGN19_00095"
     CDS             complement(5147..>5595)
                     /locus_tag="VGN19_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020015658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEV7194313.1"
                     /translation="VCSTLTAWTPSGPWGCRRGFDSIVQAATGLALLESVDGRTPGAL
                     PAQVLDHATGYLLAAGIASALRRRTEVGGTWRVSAHLARTAHWLLQTDALDAPSTPVD
                     PDPWLVEAATESGRVRLPRPAFRIDGAQSVFAWVGHRWGTDEARWL"
BASE COUNT          875 a         2015 c         1837 g          868 t
ORIGIN      
        1 acggtgtagg cgtctgtcct ggccgtgtcc agctcgagcc gctggcagaa aatgggtcgc
       61 cgcggaaact gcgggttgcc gccaatgtgg tcgaagtgca ggtggcagtt gatgaccatg
      121 tcgatgtcct cgacactcga cccggcggac cgcagggcct ccccgatatc gacgcggcgt
      181 gggcggtacc acgcgtcagt ccccgggtcg gcctcgccca ggccgctgtc catgagcagc
      241 aacccagccg ttgtgcggac caggtacccg tagacagcct cgacgcgagg ctgacccgtc
      301 gtcgtctcct gcgctggacg cacgaaggtc ccgagctgga ttcgctggat gtcgtcgacc
      361 atcatggaca ctcaacctag agccgacgac cctcgcctgg tgcgcgagga tgtcggtgtg
      421 ccccggacga cccctccccc gcggaaccgc ctacggtcgg gccttggact gaccctcatc
      481 ctgttcgtcc tgggcctggt ctcggtggtc acggctggtg tcgccgacgc ccacacccac
      541 ctggtgaaga tcaccccagc gctcggagtg accctcacga cgccgccttc cgcagtggtg
      601 ctgaccttct ccgagccggt gggtaccggc ttcgccacgg tcagggtcac ggacggaagt
      661 ggtcgcgacg tcggggccgg cccggcccag atagccggcg ccgtggtcac ccagccgttg
      721 acctccaacc tcgcctccgg gccgtatgcc gttgccttca gggtcgtttc ctcggacggc
      781 catccggtcg cggacgtctc cgcgttcact ctcgcggtgg cgggcagggt cgggcccaca
      841 ccctccccca gcgcctttac gacgtctggc ccgagctctg ccgccagccc ccgccccgac
      901 ccccacgctg ccgggcaccc tgggtccacc gcggacgtcg accccgccac gacgcgcctg
      961 cggcgattgg ccatggcggt tggagtcgga gccttggcgc tgtccatcgg gacgtcgatg
     1021 gtcgtcctga gccgtcgtgc gacgcgggcc tgagcggtcc acctgtcgat ttcacctcgg
     1081 cggtggcgtc ctgctaatgt ctcccctcgc gcgccattag ctcaattggc agagcagctg
     1141 actcttaatc agcgggttcg gggttcgagt ccctgatggc gcaccacggc aaaaccgcag
     1201 gtcaggccct gtcttcgtca aacagcagtc cacgtgagaa gggccccggc tcacccgcca
     1261 tgcgggacga gatcgcccat ctcgtggcgt cgcagggcta caccctccgc caggccgcca
     1321 ctgcactcgg tgtctcccgc tcgatcctca aaacggatgc tgccgggtgc tcaagatcgc
     1381 ccctcggccc tgtccggccg gcccgcgggg tcgtcgaatg ggacattgac gcgcgcgtcc
     1441 cgtcactgat cttcgtcagc gcaccggtcg atggcggtca ccgtcagtcc actgagggga
     1501 ctatgaggat cggaacctcg aggtgcccgt gaagcaggtg cggcaggacg ggtcggtcca
     1561 cgaggtgaac cagggccgcg gcgtggccgg cgcgggcggc gcccaggacc agcatcgtgg
     1621 cattggcctc acgcgcggct gacaacagct ccccggccac gggtcccctg cgggcgtcat
     1681 aggaccaccg gcagccactg ccggccagtg cgttcgcggc gacctcctga acctctcgta
     1741 cccgccctgc tgtcagctgt tcccaatggt ccgcatccgg atcggggtag gcgtcggaga
     1801 cgtccagcac gtgcaccacc cggaggtgct cgtccaacgc gatggcgagc ttcgcggcga
     1861 atctgagcgc aaccagggcg ggctcatgat ggtcgaagcc gacgacgatc actgcccctt
     1921 ctgaggattc gtcattccct gccaccgccg tctccttccc tcgaatgaaa ggtcaccacc
     1981 agcaggcggc ccacagcggt cgcgcgaagt ctgtggccct cccgacacca gatcgcatcc
     2041 aaccggccca gctcgcccac gccgtcggca gtgcagccgg cctcgagcgc gacgaccagc
     2101 aggtgtccgc gagcgggcgc caccagctca ataccggcca cgtcggtcag catggtgatc
     2161 tccgcggtcg cccaacctgc gcgtgccatc acgttgagcg cggacgcggt caccccggcg
     2221 ggcaggtcgc acgacgtctt cgcctcgccg gggaaggaga tcgtgtcgaa catgctcagt
     2281 ggatgtgggc ggccatccac cgtgagggtc aacccgtgct cgccgagcgc gacgaactgt
     2341 cgctgcaccc ctgcaaagct cgagaacggc ccgctgcggg caatctccgc gaggctcacc
     2401 cgccaggaga agtcgtcgta tgccgcgtcg gcggggtcct gggccatgac tcgcgtgttc
     2461 cccgcaccgt tgcgccaggc cacgctcgcg cactcgccga gacgaacgac cttcggcgcc
     2521 tggactgtcg agctcatgcc tccatgcaac cacgcgccgg ccttcggccg aggagtccga
     2581 actgcgagaa gggtgcgacc tggcgtggac ggccgtgcga ccgacgtggt gcacttgggg
     2641 acatgtcttc gagcaccgcg gtgagccgcc tgcacatggt ccccatgtgc gacggcctca
     2701 tgcggtgttg ctgctgccgc tgagccccca cagcccgcac cagtacgacg cctcccagcg
     2761 cgtcgaccag cccaggagac aacccatgca ccacacgtca gtcacccacc cgccggccag
     2821 ccacacgccg catcgccgca tccacctcga cctgctccga acccagggct ctgtgtgtcc
     2881 tcgaatgtgt tgccccgcct cacattccga caccaacccc gagactttgg agcacgagga
     2941 tgactgttat cacaaccgcc ggcaccgccg gtgtcaaccg tttcacccgc aaccagctgc
     3001 tgcgtaccgc tcggctcttc gccactgacc cgcacctacg cgacctggtc gacctcgcct
     3061 caggccaacg cacctggcac cgcttggacg cgacagaaca cctcgagatc tggctgattg
     3121 cgtggcccgt cggctcgagc accggatggc acgaccatct cgagtccgag ggcgcattcc
     3181 tcaccgtgga aggcgagctc gcggagcaga gctggtctgc tggacagaca caggagcgct
     3241 acctctggga aggagagggt cggtcgttcg gcgcccacca cctgcacacc gtcagcaacc
     3301 tcggagaccg gcccgcgctg tctgtgcacg tctactcccc cgccctgcgg ggcatgactc
     3361 gctatgccat catcggcaac cgcctgcggc agacctccgt cgagcgggct ggagagcggt
     3421 ggtgagcgcc gcgactgccc cgaccgcggc ccactgggag acccagctgt tcagcgaggg
     3481 acgcgggtcg caggccccgg tgtacgacgg ggtcgacgac cagctcgccg acgctcgaag
     3541 ccgcctggtc agagtcagcg cccgcgcggc ataccaagaa gcgctctatc gacgcgccgt
     3601 cctggtggac atccgtcccg ccgcccagcg agccgccgaa ggcgagatcg cagcccagct
     3661 ggagcccctg accgtggagc gcaacgtgct tgagtggcgg ttcgatccgc gtcacgagtt
     3721 ccggctgccg caggccgggt acgacacgcg ggtgctcgtg ctgtgccagg agggctacac
     3781 gtcatcactg gcagcggacg ccttggtgcg gctcggggtg cgccgggcta ccgatgtgat
     3841 cggtgggttc agggcgtggc gcgaagcggg cctgccgacg acccgcgcac ggtagagggc
     3901 agcaaagcgg cggccgcagc aacgggccgg cctgaccctc agaggtacag gccggtctgg
     3961 ccgtcctgca ctcgcggggc cgccacggca tggatgtcgc gctcccggag cagcacgtag
     4021 tccttggttt tcagctccac ctcggcgcgg tcctcggggt cgaacagcac gcggtcatcg
     4081 accttgacct gtcggacgtt ggggccaacc gcgaccacgg tcgcccaggc gagccgtttg
     4141 cccacgcttg cggtggctgg aatgacaatg cccccaccag aacgccgttc acctcgctcg
     4201 ccatccaggg aaaccagcac tcggtcatgc agcatccgga tcgggagcgg gtcggtacct
     4261 ccctcagcca cgatgacggc gccaggcgcc gaggcccagc agcgccacgg cggtcgcgac
     4321 gacggcggcg actcgctcga cccgcaggtc gccggcctcg gtatgagtcg ctgtgtagaa
     4381 ccgcagcttg aggctcgcga cctcgcggcg gacgatctcg cgtggagcgg tccgcgcgtg
     4441 cagctcgttg acggtgccgg cgagccgcgt acgggccgcg acgatctcgg cctcgagctg
     4501 gtcgagcgac ttggtggctt cgtcactcat gggtgctccg atcagtcagc aggtctggtg
     4561 gaagtcggga ccgccgaagc ggtcggtcag gcgttcggtc aggctaggcc gaggtcgcgg
     4621 cgcagcttgg cgacgtgacc agtggctttc acgttgtaga aggcgtgcga cacggtgccg
     4681 tcctcgccga caacgacggt gctgcgaatg acgccctcga ccgtcttgcc gtacagcttc
     4741 ttctcgccga acgcactgta ggcattcatg acggaccggt cggcgtccga gagcagcgtg
     4801 atcgtcaggc cgtccttcgc acggaccttc gcccgcttgc tcgggctgtc aggcgagatg
     4861 cccagcacct cgtagccctc ctgatgcaac gtgttgatgt tgtcgctgaa gtcgcaggcc
     4921 tgcgtcgtgc agccgggcgt catggcggcc gggtagaagt acacgatgac cttgcgtccg
     4981 cgcaggctcg acagcgacac ctcgccgccc ttgtcgtccg ggagggtgaa gtcgggggcg
     5041 gtgtcgccag ggctcagacg ctcagtcacg agtgtcaacc tatcccagca gcacgctgag
     5101 cacgcgccca ggagcagcaa ccaccagggt caggccggcc cgcggcctag agccagcggg
     5161 cctcgtcagt cccccagcga tgcccgaccc aggcgaacac cgactgcgca ccgtcgatcc
     5221 ggaaggccgg ccgcggcagc ctcactcgac cgctctcggt ggcggcctcc accagccacg
     5281 ggtcggggtc gaccggcgtc gagggtgcat cgagcgcatc ggtctgcagc agccagtggg
     5341 cagtccgcgc caggtgggcc gagacccgcc acgtgccacc gacctcagtg cggcggcgca
     5401 gggcgctggc gatgcccgcc gccagcaggt aacccgtcgc gtggtccagc acctgcgccg
     5461 gcaacgcgcc tggagttcgt ccgtcgacgg actccaggag tgccaggccc gtcgcggcct
     5521 ggacgatgct gtcgaacccc cgacgacacc cccacggccc gctgggggtc cacgcagtga
     5581 gcgtcgagca gacca
//
LOCUS       DASYFY010000004         1598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1156396, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000004 DASYFY010000000
VERSION     DASYFY010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156396"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1352)
                     /locus_tag="VGN19_00100"
     CDS             complement(<1..1352)
                     /locus_tag="VGN19_00100"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003904 - deoxyribodipyrimidine
                     photo-lyase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEV7194314.1"
                     /translation="MSDAPSVLWLRRDLRRGDLPALGAAATADGGAGGRAGQRPVGVA
                     FVLDPALWRGAGPVRRAWLAATLRATDELYDGRLCLRVGTPASVVPHLADELGAGSVH
                     VSRETTPVGRRRDNAVSTALASASVEWVETGSPYAVGPGSVVNRTGSPYSVFTPFSRA
                     WRDHGWPSPAVEPEQLELLDVPSDPDGWAMVDAALAERNLPTLPEAGQVAAHSRWAAF
                     VEDGLAAYGQDRDRADLDGVSRLSPYLKVGAVHPRTLLADLAGRTGEGPQRFATELAW
                     REFYADVLWHQPHSAWTDLRPALRNLTYEEPLDLIEAWAAGRTGYPVVDAAMRQLLAE
                     GWMHNRMRMVTASFLTKDLHVWWPTGARHFLAQLIDGDIASNNHGWQWVAGTGTDASP
                     YFRVFNPVSQGLRFDPAGDYVRRYVPELAHLSGPAVHEPWKHTEGYTHGYPERILDHA
                     R"
BASE COUNT          225 a          570 c          573 g          230 t
ORIGIN      
        1 cgggcgtggt caaggattcg ctcggggtac ccgtgggtgt agccctccgt gtgcttccat
       61 ggctcgtgga cggctggccc ggacaggtgt gcgagctctg ggacataccg ccgcacgtag
      121 tcgcccgcag ggtcgaaccg cagtccctgg gagaccgggt tgaagacccg gaagtacggg
      181 gaggcgtcgg tgcccgtgcc cgcaacccat tgccagccgt ggttgttgga ggcgatgtca
      241 ccgtcgatca gctgggcgag gaagtggcgc gccccggtcg gccaccagac gtgcaggtcc
      301 ttggtcagga agctggccgt caccatccgc atccggttgt gcatccaccc ctcggccagc
      361 agctggcgca tggccgcatc caccacgggg tagccggtgc gtcctgcggc ccacgcctcg
      421 atgaggtcca ggggttcctc gtaggtcagg ttccgcagtg ccgggcgcag gtcggtccag
      481 gccgaatgcg gttggtgcca caggacatcc gcatagaact cgcgccaggc cagctcggtc
      541 gcgaaccgtt gcggtccctc gccggtgcgc cccgcgaggt cggccagcag ggtgcgcggg
      601 tggaccgcgc ccaccttcag gtagggagac agtcgcgaga ccccatcgag gtcggcgcgg
      661 tcgcgatcct gcccgtatgc cgcgagccca tcctcgacga aggcggccca gcgggaatgc
      721 gccgccacct gccccgcctc cgggagggtg ggcaggttcc gctcggccag cgcagcgtcg
      781 accatggccc aaccgtctgg gtcggagggg acgtccagca gttcgagctg ttcgggttcg
      841 actgcgggag agggccatcc gtggtcgcgc caggctcggc tgaagggcgt gaacaccgag
      901 taggggctgc ccgtcctgtt gaccacgctg cctggcccca ccgcataggg gctgcccgtc
      961 tcgacccact cgacgctggc gctggccagg gccgtcgaca ccgcgttgtc gcgccggcgt
     1021 cccaccgggg tggtctcccg ggagacgtgc accgacccgg ccccgagctc gtccgcgagg
     1081 tgggggacga ccgacgccgg ggtccccacc cgcaggcata accggccgtc gtagagctcg
     1141 tccgtcgcgc gaagcgtggc cgccagccac gctcgacgca ctggtccggc gccacgccac
     1201 agtgccggat cgaggacgaa ggcgacaccg accggtctct gtccggccct gccgccagcg
     1261 ccaccgtcgg cagtggccgc tgcccccagt gcgggcaggt caccgcgccg caggtcccgg
     1321 cgcagccaca ggacggacgg ggcgtcggac atgttggcca cactatgccg acggccgtca
     1381 cacggctcgc gcggtcaccg cagcgggctc acgctgaccg acgccgcgac gagcgtggcc
     1441 gttactcgcg cgtcacccga catcggtggc aggctcaggg cgtggcctgt gggccacgac
     1501 acagttgtcc gccgtcgctt ggaggctcac cggatgttct cgcgcatcgc catcgtcaac
     1561 cgcggcgagg ccgccatgcg cctgatccac gcggtgcg
//
LOCUS       DASYFY010000005         3135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_157865, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000005 DASYFY010000000
VERSION     DASYFY010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157865"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..688)
                     /gene="zapE"
                     /locus_tag="VGN19_00105"
     CDS             complement(<1..688)
                     /gene="zapE"
                     /locus_tag="VGN19_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HEV7194315.1"
                     /translation="MDRGRLVRELVPPPRFESERFSTYRPDPGEPSQSEAVDRLRSYA
                     AGLDGASRGWLRRRKPATGRGIYLDGGFGVGKTHLLASLWHEVDGPKAFGTFVEYTNL
                     VGALGFQATVEALSGHRLVCIDEFELDDPGDTVLMASLLGRLAGAGVSLAATSNTLPD
                     ALGQGRFAAEDFLREIQALSARFDVVSVGGPDYRHRDSVDSPAPLTEAEVVASVDRAG
                     GVFDHFVDVTR"
     gene            757..1473
                     /locus_tag="VGN19_00110"
     CDS             757..1473
                     /locus_tag="VGN19_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7194316.1"
                     /translation="MRLLLDHTGTYPPGTVLGTDQLADLYAPEARRWLRVNFVSTVDG
                     AATGSDQRSGSINTDADQVVFELLRRLSDIVVVGAGTVRAEGYPSLQADDPRAPRLVV
                     VSHSGAVPESVCGGPEGSVLFVTRENADPKALNRSRELLGPEFVLTAGRDDVDLLAMR
                     HMLEDRGFRQILCEGGPALFGSMLEAGIVDELALTWSPKLVAGSHKSILSGPARDVMM
                     APLLLLEEGGSILGRWRVNP"
     gene            complement(1463..2632)
                     /locus_tag="VGN19_00115"
     CDS             complement(1463..2632)
                     /locus_tag="VGN19_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7194317.1"
                     /translation="MAQLGPAARKTVLGAAVAGGSVALGGALTSVGAAAYFARKVLTP
                     DRQRPDDTQILAVDSTALTLDLTVDTTSPGRYGLWLDGSRGHVRLGEVLDVDQERGRV
                     RRELHGVDYGHLAPGFARWNQYYFAGPPDRALGVRTEYLEVPTELGTMPAWLIPAEGR
                     SDRWAILVHGRGARRDEALRAVKPLRGNDINVLIPSYRNDLGARSGPDGRYNLGLSEW
                     RDVEDAALVALQRGARELILVGWSMGGAIVLQMLSQSWVADQVSQVVLDGPVIDWGDV
                     LAHHARQHKVPPPIDGLSRSLMGRRATRRLVGVHSPLDVAKTNWVDRAAELKHPMLVI
                     HSVDDEFVPVGPSERLAAARPDLVTMQRWDTARHTKEWNLDPQRWERSVSDFVRG"
     gene            complement(2635..>3135)
                     /locus_tag="VGN19_00120"
     CDS             complement(2635..>3135)
                     /locus_tag="VGN19_00120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018775356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEV7194318.1"
                     /translation="QDKRVMLKIKHERTADCVVAGYRTHKTGDDLVGSLLLGLYTEDG
                     SLMSVGVIGAFPMARRKGLFEELQSLVTTFEDHPWAWAGEEMGTRTPTSGATSRWNAG
                     KDLSFTPLRPERVVEVRYDHMEGARFRHTAQFVRWRPDREPSSCTYAQLEEPVSFDLA
                     DVLGEA"
BASE COUNT          491 a         1141 c         1044 g          459 t
ORIGIN      
        1 gtcgtgtcac gtcgacaaag tggtcgaaca cgccaccagc gcggtccacc gacgcgacga
       61 cctcggcctc ggtcaacggc gccgggctgt cgacggagtc gcgatggcgg tagtccggac
      121 cgccgaccga caccacgtcg aagcgtgccg acagggcctg gatctcgcga aggaagtcct
      181 cagcggcgaa tcgcccctgc cccaaagcgt cgggcagggt gttggacgtc gcggcgaggc
      241 tgaccccagc gccagccagc cgccccagca ggctggccat cagcacggtg tccccggggt
      301 cgtcgagctc gaactcatcg atgcagacca gccggtgccc gctcaacgcc tccacggtgg
      361 cctgaaagcc cagggccccg accaggttcg tgtactccac gaacgtcccg aaggccttcg
      421 gaccgtccac ctcatgccac agcgaggcga gcaggtgagt cttcccgacg ccgaagccgc
      481 catcgagata gatccctcgg ccggtggccg gcttcctccg acggagccac ccgcgagacg
      541 caccatcgag ccccgcggca tacgaccgaa ggcggtcgac cgcctcgctc tggctcggct
      601 cccccggatc gggccggtac gtggaaaagc gctcggactc gaagcggggc ggtggcacca
      661 gctcacggac gagacgtccg cggtccagct gcgggatacg gtcgagcagc gagccaggca
      721 cgcaggcagc gtagtcaggg tggcacactc ggggccatgc gcctcctgct cgaccacact
      781 ggcacgtacc ctcccggcac ggtcctcggc acggaccagc tggccgacct ctacgcgcct
      841 gaagctcgcc gctggctacg cgtcaacttc gtctcgaccg tcgacggcgc agccacgggc
      901 agtgaccaac gctccggcag catcaacacc gacgccgacc aggtcgtctt cgagctcttg
      961 cggcggctga gcgacatcgt cgtggtcggc gcgggcacgg tgcgtgcgga gggctacccc
     1021 tcactgcagg ccgacgaccc gcgcgcgccc cggctcgtcg tggtcagcca ctccggcgcg
     1081 gtgccggaga gcgtctgcgg tggtcccgaa gggtcggtcc tgttcgtgac gcgcgagaac
     1141 gccgacccga aggctctcaa ccgctcccgc gaacttctgg gacccgagtt cgtcctcacc
     1201 gccgggcgtg acgacgtcga cctgctggcg atgcggcaca tgttggagga caggggcttt
     1261 cgtcagattc tctgcgaagg cggtccggcg ctcttcggca gcatgctcga ggctgggatc
     1321 gtcgacgagc tcgccctcac gtggtctccc aagctggtgg ccggcagcca caagagcatc
     1381 ctgtccggcc cagctcgcga cgtcatgatg gcgcccctgt tgctgctcga ggagggcggc
     1441 tccatcctcg gccgctggcg cgtcaacccc tgacgaagtc cgaaactgaa cgctcccacc
     1501 gctgggggtc gaggttccac tccttggtat gccgcgcagt gtcccatcgc tgcatcgtga
     1561 ccagatcggg gcgggccgcc gcgagccgct cggagggtcc cacgggcacg aactcgtcat
     1621 cgacagaatg gatgacgagc atcggatgct tgagctcggc ggcgcggtcc acccagttcg
     1681 tcttggcgac gtccagcgga ctgtggacac ccaccagacg ccgggtggcc cggcgcccca
     1741 tcagcgagcg gctcaagccg tcgatcggcg gtggcacctt gtgctgcctg gcatggtggg
     1801 ccaggacgtc cccccagtcg atgaccggcc cgtccaggac cacctggctg acctggtcgg
     1861 ccacccagct ttggctcagc atctgcagga cgatggcccc gcccatggac cagccgacca
     1921 ggatgagctc gcgggctccg cgttgtaggg ccaccagcgc cgcgtcctcg acgtcacgcc
     1981 actccgacag cccaaggttg taccggccgt caggaccact gcgggccccc agatcgttgc
     2041 gatagctcgg aatcagcacg ttgatgtcgt tgccccgcaa cggcttcacg gcacgcaggg
     2101 cttcgtcgcg gcgagcgccc cgcccatgaa ccaggatggc ccagcggtcc gaccggccct
     2161 cggcggggat caaccaggcg ggcatggtgc ccagctcggt tggcacctcc aggtactcag
     2221 tgcgcacccc gagggcgcgg tccggcgggc cggcgaagta gtactggttc caccgtgcga
     2281 atccgggcgc caggtggccg tagtcgacgc cgtggagctc gcggcggacc cggcctcgct
     2341 cctggtcgac gtccagcacc tcgccgagcc ggacatgacc tcgtgagccg tccagccaca
     2401 ggccgtaccg ccctggcgac gtcgtgtcga cggtcaggtc cagggtgagg gcggtggagt
     2461 cgacggcgag gatctgggtg tcatcgggcc gctgacggtc cggggtgagc accttgcggg
     2521 cgaagtacgc cgcggccccc accgaggtga gcgcaccgcc gagggcaacc gagccaccgg
     2581 ccacggccgc gcccaggacc gtcttacgcg ccgccggacc cagctgggcc atggctacgc
     2641 ctccccgagc acgtcagcca ggtcgaagct caccggctcc tcgagctgtg cgtaggtgca
     2701 cgaggagggc tcacggtccg ggcgccaccg gacgaactgc gccgtatgcc ggaagcgcgc
     2761 accctccatg tggtcatagc gcacctcgac gacccgctcg ggccgcaagg gggtgaacga
     2821 caggtctttg ccggcattcc accggctcgt tgcgccgctg gtcggcgtcc gggtccccat
     2881 ctcctccccc gcccacgccc aggggtggtc ttcgaacgtc gtgaccagcg actgcagctc
     2941 ctcgaacagc cccttgcgcc gggccatcgg gaacgccccg atgacgccga cgctcatcag
     3001 cgacccgtcc tcggtgtaca ggcccagtag cagagacccg accaggtcgt cgcccgtctt
     3061 gtgcgtgcga tagcccgcga ccacgcagtc cgccgtccgc tcgtgcttga tcttgagcat
     3121 gacgcgtttg tcctg
//
LOCUS       DASYFY010000006         7353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1681997, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000006 DASYFY010000000
VERSION     DASYFY010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7353
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1681997"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VGN19_00125"
     CDS             <1..446
                     /locus_tag="VGN19_00125"
                     /inference="COORDINATES: protein motif:HMM:NF014906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEV7194319.1"
                     /translation="ELARQTLQMAMEHPAIGVELRRLTTGGPGELATVETLLTLLEAA
                     GLGREDAVRFYAVLSNHALTGASAQAMSRLQLGGIPEAEAVQWFELRAVDTERYPAVA
                     ASLEDIANLRDTDIYMIGVDVILDAAQAAATGLPGGPPNNRRSDG"
     gene            439..1848
                     /locus_tag="VGN19_00130"
     CDS             439..1848
                     /locus_tag="VGN19_00130"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011773563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7194320.1"
                     /translation="MASTVYERRASDPRLVDAALARTAPQVFWLEDVDRPSYPPLKAV
                     LDADLTIVGGGYCGLWTAVLAKLRNPGLRVVVVESRQVGWAASGRNGGFCEASLTHGD
                     ENGRTRWPKDHAALEELGSANLVALQDDLATLSIDAQVERTGTLAVAVEPHQVAWLKE
                     PGPGEFLDAAAVRREIDSPIVLAGRWSREASLLVHPARLAVGLARAAEDLGVVIFEGS
                     HVVGLDVDRHGPVQVRTGHGAVRSAQVALATNVFPSLVRRSRRRTVPVYDYVLVTEPL
                     TPAQLSSVGWSNRQGLTDLANQLHYSRLTADNRILYGGYDAIYHPGRRIREQYEDRPE
                     SYRRLASHFLTTFPQLEAVRFSHRWAGVIDTSTQFCAFHGLAKSGRIAYAAGFTGLGV
                     AATRFAAEVMLDRLSGTDTPRTRPELVRCLPLPFPPEPLTSVGIAMTRWALDRADHHE
                     GQRNLFLRGLDSVGLGFDS"
     gene            1868..2455
                     /locus_tag="VGN19_00135"
     CDS             1868..2455
                     /locus_tag="VGN19_00135"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7194321.1"
                     /translation="MSTSVPQLIIDSRAGDAEAFAQLYAGHVGPLRGYARRLVLQESA
                     AEDLVAEAFARTWEQLRAGGGPTVAFMGYLRAVVLNGHLRQLRRDQGLFWVADLEEAG
                     MASPELAARIAEQSPEHLVLEQLLQEHLRHALATLPHRWKQVLVMVYVEARPYRDVAA
                     QLGLTVEATRQLSVRARGGARQALATLADGDWAAA"
     gene            2495..3274
                     /locus_tag="VGN19_00140"
     CDS             2495..3274
                     /locus_tag="VGN19_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEV7194322.1"
                     /translation="MANAPAAAQALALLSLLARHTEPLPAGAIARDLGLPRSTTYHLL
                     GVLRDHGFVTHLAEERRYGLGVAAFELGSAYQRQAPLQRIARPLLGRLVDTTTHNAHL
                     AVLHGRDVLYVIEERAPGRPLLVTDVGVRLPASLTASGLAMLAELSPAQLRALFPHRD
                     TLVQRDGVGPATVSELRRQLAAVRHRGHAVEDSSITPGLASVAHAVFDHTGHPVAGVA
                     VTFPSEQVEDSERARLVQAVTRTSLALTARLGGRPPARPTS"
     gene            3271..3837
                     /locus_tag="VGN19_00145"
     CDS             3271..3837
                     /locus_tag="VGN19_00145"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEV7194323.1"
                     /translation="MNAVVTAIVLCGGAGRRFGGDKTQALVAGVPLLDHVLVALPAEW
                     PIVCVGPPRPTAREVSWCREEPPGGGPVAALAAGLADASTGFVVVLGGDMPQAGSAAT
                     AIAAALDAQPEVDAVVGTDGEGRRQPLLAAYRTASLRRALPDPPAGTSMMRLLDQLVV
                     APLQLETSISLDVDTAEDLRLARHRLEE"
     gene            3834..4811
                     /locus_tag="VGN19_00150"
     CDS             3834..4811
                     /locus_tag="VGN19_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HEV7194324.1"
                     /translation="MKAITIPQPGDPSALVLADVDAPEPHSGEVRVRVVAAGVNRADL
                     RQRMGFYPPPPGAPEFPGLEVSGTIDAVGPQVEGWAVGDEVCALLAGGGYAEQVCVPA
                     GQLLPVPTGVSLVDAAALPEVVSTVWSNVFMTANLLPGQTFLVHGGSSGIGTMAIQLA
                     REVGAHVAVTAGSAAKLDVCRELGAEILVNYREQDFVSEVKAATGGAGADVILDNMGA
                     AYLDRNVDALAVNGRLVVIGLQGGTKAELNLGQLLAKRAAVIATSLRARPAAEKATIV
                     AAVREHVWPLIESGRVKPVVHSRHALAQAADAHRELEASGHIGKILLTT"
     gene            4842..5204
                     /locus_tag="VGN19_00155"
     CDS             4842..5204
                     /locus_tag="VGN19_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009074966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEV7194325.1"
                     /translation="MNSVAVTLVLLVALIHVYIVVLEMALWTTPRGRAAFGLTSEFAL
                     ATKTLAANQGLYNGFLAAGLVWGLVGPEHLRFGFRVFFLGCVVVAGVYGAATASRRIL
                     LVQALPGALALIAVLIAH"
     gene            5249..5863
                     /locus_tag="VGN19_00160"
     CDS             5249..5863
                     /locus_tag="VGN19_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial proteasome activator family protein"
                     /protein_id="HEV7194326.1"
                     /translation="MTEQQPPHHAPDQRDQPGHPEQGSEQQRFVVVTQDGMGVAHDDG
                     EDAPTNPADLVEQPAKVMRIGSMIKQLLEEVRNAPLDEAGRVRLAEIHRRSIKELEDG
                     LAPELIDELERLALPFDEGHAPTDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAAQQ
                     QLAQMRRALPPGHLPEGQPSGMSPMGGPGMPQDDHPGGPTGQYL"
     gene            complement(5883..>7353)
                     /locus_tag="VGN19_00165"
     CDS             complement(5883..>7353)
                     /locus_tag="VGN19_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding dehydrogenase"
                     /protein_id="HEV7194327.1"
                     /translation="VKDSAELAWQDWRGTAGFDRLEDEDRWPVQWARAYVEFTAGEKR
                     SWLRQQGMRFFPVVGWAERGDGSASGHGNSVPRFHITWGTGPGVLEPFLRRVAEHVAT
                     GRVEIRHRHQVDELVTSGGAVTGIRGTLLAPDAADRGRATNRTAVGDFELSAQAVIVT
                     SGGIGANHDLVRQNWPARLGTPPTRLITGVPAYVDGRMLAVTEAAGGRIVNRDRMWHY
                     VEGIQNWSPLWPHHAIRILPGPSSMWFDGNGDRLPPPLFPGFDTLGTLAHLRRTGHDH
                     SWFVLTHKIIGKEFALSGSEQNPDLTGKSVRQVLNRARTDVPAPVRAFLDRGADFVTA
                     ETLPGLVAKMNALTPQAPLELAHLERQIVDRDRQLANDFSKDAQVTAILGARNFRGDR
                     LIRTARPHRILDPAAGPLIAVRLHVLTRKTLGGLETDLSSRVLSPSGDPVPGLYAAGE
                     VAGFGGGGMHGYRALEGTFLGGCMFSGRAAGRAAAVAVA"
BASE COUNT         1053 a         2671 c         2514 g         1115 t
ORIGIN      
        1 ccgagctggc gcggcagacc ttgcagatgg cgatggaaca ccccgccatc ggcgtggagc
       61 tgcggcgact caccacgggc ggcccaggcg agctcgcaac agtggaaacg ctgctgacgc
      121 tgctcgaggc tgctggcctt ggtcgcgaag acgccgttcg gttctatgcg gtgctgtcga
      181 accacgccct gaccggagcg tcggcccagg cgatgtcccg tctccagctc ggcgggatcc
      241 ccgaagccga ggccgtgcag tggttcgagc ttcgtgccgt cgacacggag cgctaccccg
      301 cggttgcagc ctccctggag gacatcgcca acctacggga cacggacatc tacatgatcg
      361 gcgtcgacgt gatcctggac gcggcgcagg ccgccgcgac cgggctgccc ggcggaccac
      421 ccaacaaccg ccgtagcgat ggctagcacc gtctacgaac gacgagcctc ggatccgcgg
      481 ctcgtcgacg cagctctagc ccgcacggcg cctcaggtct tctggctgga ggacgtcgat
      541 cggccgtcgt acccgccgct gaaggcggtg ttggacgccg acctgacgat tgtcggcggg
      601 gggtactgcg gcctttggac ggccgtgctg gcgaagctac gcaacccggg gctacgcgtc
      661 gtcgtggtgg agtcacgaca ggtcggctgg gcggcgtcag gtcgcaacgg cgggttctgc
      721 gaggccagcc tgacccacgg ggacgagaac ggccgcactc ggtggccgaa ggaccacgcc
      781 gccctcgagg agctgggctc ggccaacctg gtcgccctgc aggacgacct tgccacgctg
      841 tcgatcgatg cccaggtgga gcgcaccggc accctggcgg tcgccgtcga gccgcatcag
      901 gtggcctggt tgaaggaacc tgggccgggc gagttcctcg atgccgcagc ggtacggcgt
      961 gagatcgaca gccccatcgt cctcgccggc cggtggtccc gggaggcaag cctcctggtc
     1021 cacccggcca ggttggctgt cgggctcgcc cgtgcggccg aagacctggg cgtggtcatc
     1081 ttcgagggtt cgcacgtggt cggcctggac gtcgaccgtc acggaccggt tcaggtccga
     1141 accggacacg gcgccgtgcg cagcgcccag gtggccctgg ccacgaacgt gtttccctcg
     1201 ctcgtgcgac gcagccgccg ccggacggtc ccggtgtatg actacgtcct ggtgaccgag
     1261 ccgctcacgc cagcacagct gagttcggtc ggctggtcga accggcaggg gctgaccgac
     1321 ctcgccaacc agctccacta ctcgcggctg acggcggaca accggattct ctacggcggc
     1381 tacgacgcca tctatcaccc cggccgcagg atccgtgagc agtacgagga tcgtcccgag
     1441 agctaccgcc ggctcgcttc ccatttcctg accaccttcc cccagctcga ggcagtccgg
     1501 ttcagccatc gctgggcagg cgtcatcgac accagcactc agttctgcgc cttccacggg
     1561 ttggccaagt ccgggcggat cgcctatgcc gctgggttca ccggtctggg cgtggccgct
     1621 acccggtttg cagccgaggt catgctcgac cgcctgtccg ggaccgacac cccccggacc
     1681 cggccggagc tggtccgctg cctgccgctc cccttcccac ccgagcccct cacgagcgtc
     1741 ggcatcgcga tgacccgatg ggccctcgac cgggccgacc atcacgaagg tcagcgaaac
     1801 ctgtttctgc gcggcctgga ctcggtcggc cttggattcg actcctgacc cggtgagcga
     1861 gtcacccatg tccacctcag taccccagct catcatcgat tctcgagccg gcgacgccga
     1921 ggcattcgcg cagctctatg ccggacacgt cggccccttg cgcggatacg cccgccgtct
     1981 ggtcctgcag gagtctgcgg cggaggacct ggtcgctgaa gccttcgccc gcacgtggga
     2041 gcagctgcgg gccggcggcg gacccacggt cgcgttcatg ggttacctgc gggcagtggt
     2101 gctgaacggg cacctgcgcc agctgcgacg ggatcagggc ctgttctggg tcgcggacct
     2161 cgaagaagcc gggatggcga gtcccgagct cgcggcacgg atcgccgaac agtcccccga
     2221 gcacctggtc cttgagcagc tactccagga gcacctgcgg cacgctctgg ccacgcttcc
     2281 ccaccgctgg aagcaggtcc tggtcatggt ctatgtcgaa gcccggccct accgggacgt
     2341 ggcagcccag ctgggcctga cggtcgaagc cacccggcag ctgtccgtgc gggcccgcgg
     2401 tggcgcgcgc caggctctcg cgaccctggc cgacggggac tgggctgcag cctgacacgc
     2461 agcacagacg tctcaggtct gagacgatgc gttcatggcc aacgcaccgg ctgccgctca
     2521 ggccctcgcg ctcctcagcc tgttggcccg gcataccgag ccactgcccg caggcgccat
     2581 cgcacgggat ctggggctcc cccgctcgac cacgtaccac ctgctcgggg tgctgcggga
     2641 ccacgggttc gtgacccacc tggcggagga gcggcgctac ggactcggcg tggcggcgtt
     2701 cgagctcggc tccgcctacc agcgccaggc accgctgcag cggatcgcgc gaccgcttct
     2761 cgggcggctc gtcgacacga ccacgcacaa cgcgcacctc gcggtcctgc acggtcgtga
     2821 cgttctgtac gtgatcgagg agcgcgcccc cgggcgcccc ctgctcgtga ccgacgtcgg
     2881 cgtccgcctc ccggcatccc tcaccgcgag cggcctggcg atgctcgcgg agctctcccc
     2941 ggcgcagctt cgtgcgctgt tcccgcaccg cgacaccctg gtccagcggg acggggtcgg
     3001 tcccgcgacg gtgagcgagc tgcgacgtca gctcgcggcg gtgcgtcacc gcgggcatgc
     3061 cgtcgaggac agcagcatca ccccgggact ggcgtccgtc gcccatgcgg tcttcgacca
     3121 cacgggtcat ccggtggcgg gcgtcgccgt gaccttcccc agcgagcagg tcgaggactc
     3181 ggagcgggct cgcctcgtcc aagccgtgac gcgcacgtcg ctggccctca ccgcgcgcct
     3241 tggtggccgt cctccggcac gcccgacctc gtgaacgccg ttgtcaccgc catcgtgctg
     3301 tgcggtggcg ccggccgcag gttcgggggt gacaagacgc aggctctggt cgccggcgtc
     3361 ccgctgctgg accacgtgct cgtcgcgctc ccggccgagt ggcccatcgt gtgcgtcggc
     3421 ccgccgcggc ctaccgcgcg cgaggtcagc tggtgccgtg aggagccacc cggaggcggt
     3481 cccgttgcgg ccttggccgc cggtctcgcc gacgccagta cggggttcgt ggtcgtcctc
     3541 ggtggcgaca tgcctcaggc tggctcggcc gcgacagcca tcgccgcggc tctcgacgcc
     3601 cagcccgagg ttgacgcggt cgtcggcacc gacggtgagg gccgacgaca accgctgctg
     3661 gcggcatacc ggactgcttc gctgcgccgg gcactgccgg atccgccggc aggcacgtcg
     3721 atgatgcgcc tgctcgacca gctggtggtg gctcccctcc agctggagac gtcgatctcc
     3781 ctcgatgtcg acaccgccga ggacctccgg ttggcccggc ataggctcga ggaatgaagg
     3841 cgatcacgat tcctcagccg ggcgacccct ccgccctggt cctggccgac gtcgacgctc
     3901 ccgagccgca ctcgggggag gtccgggtcc gggtggtcgc cgcgggggtc aaccgcgccg
     3961 atctgaggca gcgcatgggc ttctatccgc caccgcccgg ggcaccggag ttcccaggcc
     4021 tggaggtgag cggcaccatc gatgccgtcg gtccgcaggt cgagggttgg gccgtgggcg
     4081 acgaggtctg cgccctgctc gccggtggcg gatacgccga acaggtctgc gtccccgccg
     4141 ggcagctgtt gcccgtgccc accggggtat cgctcgtgga cgccgcggcc ctgcccgagg
     4201 tcgtcagcac cgtgtggtcc aacgtgttca tgaccgcgaa cctcttgccg gggcagacct
     4261 tcctcgtcca tggcggctcc tccggcatcg gcacgatggc gatccagctc gcccgcgagg
     4321 tcggagcgca cgtcgccgtc acggcgggtt ccgccgccaa gctcgacgta tgccgtgagc
     4381 tgggcgcgga gatcctcgtg aactaccgag agcaggactt cgtgagcgag gtcaaggccg
     4441 cgaccggcgg cgcgggtgcc gatgtcatcc tcgacaacat gggcgctgcc tatctcgacc
     4501 gcaatgtcga cgcgctggcc gtcaacggcc gactcgtggt catcggcctc cagggcggaa
     4561 ccaaggccga gctcaacctg ggccagctgc ttgccaagcg cgccgccgtc atcgccacct
     4621 cgctgcgcgc tcggcccgcc gccgagaagg ccaccatcgt cgcggccgtt cgcgagcatg
     4681 tctggccgct catcgagtcc ggccgggtca agcccgtcgt ccacagccgc catgcgctcg
     4741 cccaggctgc cgacgcccac cgcgagctgg aggccagcgg gcacatcgga aagatccttc
     4801 tgaccacctg agccggccag cgggatgcga ggctagggcc catgaactcc gtggccgtca
     4861 ccctcgtcct gctggttgcc ctcatccacg tctacatcgt ggtgctcgag atggccctgt
     4921 ggacgacgcc ccggggccgg gcggcttttg gtctgacctc cgagttcgcc ctcgcgacca
     4981 agacgctcgc ggcgaaccag ggcctctaca acggcttcct ggcggcgggc ctggtctggg
     5041 gtctggtcgg cccggagcac ctgcggttcg gctttcgggt gttcttcctc ggttgcgtgg
     5101 tggtcgccgg ggtctatggc gctgccaccg ccagccggag gatcctgctg gtccaggcgt
     5161 tgcccggagc ccttgccctg atcgcggtgc tgatcgcgca ctgacccgcg gcgccgcagc
     5221 gggatccgac ctgtagcagg atggagccat gaccgagcag cagccaccgc atcacgcgcc
     5281 ggaccagcgg gaccagcccg gccatcccga gcagggcagc gagcagcagc gcttcgtcgt
     5341 ggtgacccag gacggcatgg gggtcgcgca cgacgacggc gaggatgccc cgacgaaccc
     5401 ggccgacctg gtcgagcagc cggccaaggt catgcggatc ggttcgatga tcaagcagct
     5461 gctcgaggag gttcgtaacg cccccctcga cgaggccgga cgcgtgcggc tcgcggagat
     5521 tcatcgacgt tccatcaagg agctcgagga cggtctcgca cccgagctga tcgacgagct
     5581 cgagcgcctc gcgttgccct tcgacgaggg tcacgccccg accgacgccg agctgcggat
     5641 cgcccaggcc cagctcgtcg gctggctgga aggactgttc cacgggatcc agacggcgtt
     5701 gttcgcccag cagatggcgg cccagcagca gctcgcacag atgcggcgag ccctaccgcc
     5761 gggtcatctg cccgaaggac agccttcggg gatgtcaccc atgggtggcc caggcatgcc
     5821 gcaggacgac catcccggcg gacccaccgg gcagtacctc tagctcctcg cagcccggca
     5881 ggtcaggcga ccgcgaccgc ggcggcccgg cccgcggcgc ggccggagaa catacacccg
     5941 cccaggaaag tgccctccag cgcacggtag ccatgcatcc cgccgccgcc gaaaccggcg
     6001 acctcgcccg cggcatacag gcccggaacc gggtcaccgg acggtgacaa cactcgcgag
     6061 gacagatcgg tctcgaggcc acccagcgtc ttgcgggtca gcacgtgcag gcgaaccgcg
     6121 atgagcggcc cagccgctgg gtcgaggatg cggtgcggcc gcgcggtcct gatcagcctg
     6181 tcgccgcgga agttccgagc gcccaggatc gccgtcacct gagcgtcctt gctgaagtcg
     6241 ttggccagct gtcggtcccg gtcgacgatc tggcgttcga ggtgcgccag ctcgagcggg
     6301 gcctgggggg tcagtgcatt catcttggcc acgagcccgg gcagggtctc cgccgtgacg
     6361 aagtctgccc cgcggtccag gaacgctcgc accggtgcgg gcacgtcggt ccgggcacgg
     6421 ttgagcacct gccgcacgga cttcccggtg aggtcggggt tctgctccga gcccgacagg
     6481 gcgaactcct tgccgatgat cttgtgcgtc aacacgaacc agctgtggtc gtggccggtg
     6541 cggcgcagat gggccaaggt ccccaacgtg tcgaagccgg ggaacagcgg gggcggcagg
     6601 cgatcgccgt tgccgtcgaa ccacatcgag cttggcccgg gcaggatccg gatggcgtgg
     6661 tggggccaca gcggcgacca gttctggatg ccctcgacgt agtgccacat cctgtcgcgg
     6721 ttgacgatcc gcccgcccgc agcctccgtc accgccagca tgcgcccgtc cacataggcc
     6781 ggtacccccg tgatcagccg cgtcggagga gtgccgagcc gggcgggcca gttctggcga
     6841 accaggtcgt ggttggcgcc gatgccaccg ctcgtgacga tgacggcctg cgcgctcagc
     6901 tcgaagtcgc ccacggcggt gcggttcgtt gcgcgccccc ggtccgcggc atccggcgcc
     6961 agcagcgtcc cccggatccc ggtcaccgcc ccaccgctcg tcacaagctc gtcgacctgg
     7021 tggcgatgac ggatctcgac ccgtccggtc gccacatgct cggctacccg gcgcaggaac
     7081 ggctcgagga cccccggtcc agtaccccac gtgatgtgga accgcggcac ggagttgccg
     7141 tgccctgacg ccgagccgtc gccgcgttcg gcccagccga cgaccgggaa gaagcgcatc
     7201 ccttgctgtc gcagccagga acgcttctca ccggcggtga actccacata cgcccgcgcc
     7261 cactggaccg gccaacggtc ctcgtcctcg agccggtcga accctgccgt tccccgccag
     7321 tcctgccagg cgagctcggc cgagtccttg acg
//
LOCUS       DASYFY010000007         2147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_157987, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000007 DASYFY010000000
VERSION     DASYFY010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157987"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..1144
                     /locus_tag="VGN19_00170"
     CDS             200..1144
                     /locus_tag="VGN19_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194328.1"
                     /translation="MTLTTTQGASTEGATIEVRDLTKRFGDFTAVDNLSFAVEPGRIT
                     GFLGPNGAGKTTTLRMLLGLVRPTAGSATIGGQRYHDIQRPSAVVGSALEATNFHPGR
                     TGRNHLRVLADTAGVDARRVDEMLELVGIPAAARKRAGGYSMGMRQRLGLAAAMLGDP
                     QVLILDEPANGLDPEGIRWLRGFLRHLSAEGKTVLISSHMLQEVEQTVDDVVIIANGR
                     LVKQGAMADLHGESAQAIVRTTDNDALAGALRVADVTSSVNDGVLYADTSDLRLIGDV
                     ALRAQLPIYELRGATTDLEALFFELTEGTNRNLQGGNA"
     gene            1141..1944
                     /locus_tag="VGN19_00175"
     CDS             1141..1944
                     /locus_tag="VGN19_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7194329.1"
                     /translation="MTAAVRAEFRKFFTTRMWWGLAIAIFVAGAGLAVAFGFVYTIKP
                     DPSDPNPAPTGTPLQIANSVYTAGLGIGYLLTLTIGVMQIGSEYRHKTITSTFLGTPK
                     RAEVMGAKIIALLGIGAIYGVISLAGSVLAGSIVLNARGYSPFPDVGVLRTLALALLV
                     LGLWSLIGLGAGILIPNQVAALLISIGVAWIVEPLAGFGLTFWTWGREHIVPYLPSQA
                     TDAMVSGVTQGGGRAVHQLAWWGGALVLAAYAAAMAGFGSWRTVRADIS"
BASE COUNT          336 a          766 c          700 g          345 t
ORIGIN      
        1 ccgctggaca gtcggccggt ccagcgccac cagggagaac tcgacggcca cgaataccgc
       61 tgttcccatc gtcagcacta cgccggcgag gaccagcaac caatccgtca tagttcgacc
      121 atcttatggt gctggttgac cctgcccccg cgtgagttga gaggatgacc gccatgcgac
      181 acctccgggg ggatcaccca tgactttgac cacgacccag ggcgcctcaa cagaaggcgc
      241 cacgatcgag gtgcgcgacc tcaccaagcg gttcggcgac ttcactgccg tcgacaacct
      301 cagcttcgcc gtggagccgg gccggatcac cggcttcctc ggcccgaacg gcgcgggcaa
      361 gaccacgacc ttgcgcatgt tgctcggtct ggtgcgaccc actgcagggt ccgcgaccat
      421 cggcggccag cgctaccacg acatccagcg gcccagtgcg gtcgtcggct cagcgctcga
      481 ggcgacgaac ttccacccgg gacgcaccgg gcgcaaccac cttcgcgtcc tggccgacac
      541 cgctggggtc gacgcccggc gggtcgacga gatgctcgag ctggtcggca tacccgctgc
      601 cgcgcgcaag cgggccgggg gctactcgat gggcatgcgc cagcggctcg ggctggccgc
      661 agccatgctc ggcgacccgc aggtcctgat cctcgacgag ccggccaacg ggctcgaccc
      721 ggagggcatc cggtggctgc gcgggttcct gcgccacctc tccgccgagg gcaagaccgt
      781 gctcatctcc agccacatgc tgcaggaggt cgagcagacc gtcgacgatg tcgtgatcat
      841 cgccaacgga cggctggtca agcagggcgc gatggccgat ctgcacggcg agtcggctca
      901 ggcgatcgtg cggacgaccg acaacgacgc gctcgccggt gcattgcgcg tcgccgacgt
      961 gacgagctcg gtcaacgacg gcgtgctgta tgccgacacc tccgacctgc gtctcatcgg
     1021 tgacgtcgcg ctgcgcgcgc agctgccgat ctatgagctc cgcggcgcca cgaccgacct
     1081 cgaggcgttg ttcttcgagc tcaccgaggg caccaaccgc aacctgcagg gagggaacgc
     1141 atgaccgccg cagtccgggc cgagttccgc aagttcttca cgacccgtat gtggtggggt
     1201 ttggcgatcg ccatcttcgt cgccggcgcc ggcctcgccg tggccttcgg gttcgtctac
     1261 accatcaaac ccgaccccag cgaccccaat cctgccccga ccgggacgcc tttgcagatc
     1321 gccaacagcg tctacacggc cggcctgggc atcggctacc tgctgacgtt gaccatcggc
     1381 gtcatgcaga tcgggtccga gtaccgccac aagaccatca ccagcacgtt cctgggaacg
     1441 cccaaacggg ccgaggtcat gggcgccaag atcatcgccc tgctgggaat cggtgccatc
     1501 tatggggtca tctcgctggc cggctccgtt ctggccggat cgatcgtcct caacgcccgc
     1561 ggctactcgc ctttccccga cgtgggcgtg ctccgcacgt tggccctggc cctgctggtc
     1621 ctcgggctgt ggtcgctcat cggcctcggt gcaggaatcc tcatccccaa ccaggtcgcg
     1681 gcgctgctca tctcgatcgg ggtggcgtgg atcgtggagc cgctggccgg tttcgggctg
     1741 accttctgga cctggggtcg cgagcacatc gtcccgtacc tgcccagtca ggccaccgac
     1801 gcgatggtga gcggggtgac ccagggcggc ggccgtgccg tgcatcagct cgcctggtgg
     1861 ggcggagcct tggtgctcgc cgcgtatgcc gccgcgatgg ccgggttcgg ctcgtggcgc
     1921 accgttcggg ccgacatcag ctgagctgaa acacgctgtc gagggggtcg gttccgtgct
     1981 ggaaccggcc cctcggcggg tcctcaccca cctcagcggc gggcaaggtc cgggggctag
     2041 gctgggagca cccctaaacc cgtcattgtc gacgctacga aagaggcgta ttcgccgtgc
     2101 ccgaccagtc cccgaccagc gaccccatgg cggccttcgg gccgaac
//
LOCUS       DASYFY010000008         1744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_420783, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000008 DASYFY010000000
VERSION     DASYFY010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420783"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1744)
                     /locus_tag="VGN19_00180"
     CDS             complement(<1..>1744)
                     /locus_tag="VGN19_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017822140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194330.1"
                     /translation="RDRRRILRLFSPYHKRLTVVLVMIIFGAGISMLQPFLLRDVLDE
                     GIFGHNTVLLTWLVLGMIAIATVTAVFSVWQTYLSNVVGQRVMHDLRAAVYQRLQRMS
                     LAFFTRTRTGEVQSRIANDIGGLDNVVTTTATSIAQNTTTVIAATVAMCILDWRLALL
                     SLFMVPLFVYLTRRVGKVRRRITTEQQKRLADLSSLVAESLSVSGIMLGKTMGRGGDL
                     ANRFTQESRDIADLEVRSRMAGRWVMSTIQWTFAIQPALIYWLAGEAFLGNPISVGTA
                     VAFSTLVTRLLFPIQSLLGVGTDVEASMALFDRIFEYLDLPIDIVEADDPVTLRPDEV
                     LGEVRFEGVSFRYGANGDDTWTLDDVDLYVPAGTRTAVVGETGAGKTTLGYLVARLYE
                     PQQGRVTVDGVDVREASLASLAATVGVVSQETYLFHASVRENLRFARPDATDEEIEDA
                     ARTARIHDLISSLPDGYDTVVGERGYRFSGGEKQRMAIARTVLRNPPVLVLDEATSSL
                     DTQTEYAVQAELERLSEGRTTITIAHRLSTVRDADQIVVLDKGKIVERGSHEELLERG
                     GLYASLVARDVTEEA"
BASE COUNT          287 a          592 c          602 g          263 t
ORIGIN      
        1 gcctcctcgg ttacgtcgcg cgccacgagc gacgcgtaca ggccgccgcg ctcgagcagc
       61 tcctcgtgac tgccccgctc gacgatcttg cccttgtcca ggaccacgat ctgatcggcg
      121 tcacggacgg tggataggcg gtgggcgatg gtgatcgtgg tgcggccctc ggacaggcgc
      181 tcgagctcgg cctggaccgc gtactcggtc tgggtgtcca gcgagctggt ggcctcgtcg
      241 agcaccagga ccggcgggtt gcgcaggacg gtgcgggcga tcgccatgcg ctgcttctcg
      301 ccgcccgaga accggtagcc gcgctcgccg acgaccgtgt cgtagccgtc gggcagggac
      361 gagatcagat cgtggatgcg ggccgtgcgg gcagcgtcct cgatctcctc gtcggtggcg
      421 tcggggcggg cgaagcgcag gttctcgcgc acgctggcgt ggaacagata ggtctcctgg
      481 gagaccacgc cgacggtggc ggccagcgag gccagcgatg cctcgcggac gtcgacaccg
      541 tctacggtca cccgcccttg ctgaggctcg tacagtcgcg ccaccaggta gccgagcgtg
      601 gtcttgcccg ccccggtctc ccccaccacc gcggtcctcg ttccggccgg cacgtagagg
      661 tcgacgtcat cgagcgtcca cgtgtcgtcc ccgttggcgc cgtagcggaa ggacacgccc
      721 tcgaagcgca cctccccgag cacctcgtcg gggcgcaggg tcaccggatc gtcggcttcg
      781 acgatgtcga tcggcaggtc cagatactcg aagatgcggt caaacagggc catcgaggcc
      841 tcgacgtcgg tacccacgcc gagcagcgac tggatcggga acagcagccg ggtcaccagc
      901 gtcgagaagg ccaccgcggt gccgaccgag atcggattgc cgaggaaggc ctcgccggcc
      961 agccagtaga tcagcgccgg ctggatcgcg aacgtccact ggatcgtcga catcacccac
     1021 cgtccggcca tccgcgaccg gacctccagg tcggcgatgt cccgggactc ctgggtgaag
     1081 cggttggcca ggtcaccgcc gcggcccatc gtcttgccca gcatgatccc cgacaccgac
     1141 agcgactcgg ccaccagcga ggacagatcg gcgaggcgct tctgctgctc ggtggtgatc
     1201 cgccggcgga ccttgcccac gcgccgggtc agatacacga acaggggcac catgaacagc
     1261 gacagcaggg ccaggcgcca atccaggatg cacatcgcca cggtcgccgc gatcaccgtg
     1321 gtggtgtttt gggcgatcga ggtcgcggtg gtggtgacga cgttgtccag accgccgatg
     1381 tcgttggcga tccgcgactg cacctcgccg gtgcgggtgc gcgtgaagaa ggccagcgac
     1441 atccgctgta ggcgctggta aacggcggcc cgcaggtcgt gcatgacccg ctgaccgacc
     1501 acgttgctca ggtaggtctg ccacacgctg aacaccgccg tcaccgtggc gatggcgatc
     1561 atgcccagca ccagccaggt cagcagcacc gtgttgtgcc cgaagatgcc ctcgtcgagc
     1621 acgtcgcgca gcaggaacgg ctggagcatg ctgatgcccg cgccgaagat gatcatcacc
     1681 agcaccacgg tgagccgctt gtggtagggg gaaaacagcc gcaggatgcg gcggcggtcc
     1741 cgct
//
LOCUS       DASYFY010000009         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1471916, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000009 DASYFY010000000
VERSION     DASYFY010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471916"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1057)
                     /locus_tag="VGN19_00185"
     CDS             complement(<1..1057)
                     /locus_tag="VGN19_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEV7194331.1"
                     /translation="MTALAESLAAAIESGMPRARDELARLVALRSVANPAIEPESECQ
                     AAAALVVELFAEAGVAGIEAVETADASLAVVGRSAGPALSPSVVLYSHYDVVPAGDLD
                     AWSTQPFELTERAGRWYGRGAADCKGNLVAMLLALRALSEVLGRWPVEVAVVCEGSEE
                     QSSGGMEDLARSRPELVACDAFVLADTGNVAGGHPTLTTSLRGTGSVLMTVRTMAHPA
                     HSGMYGGAAPDALQALLMALASLRDESGETTIDGLAHDGVWEGEAFDSERFREDAALL
                     GGVEPLTGEATIADRLWARPAATVLAIDCPPISQVTAAAQGEARAVVNLRVPPTVDAK
                     AAQDLLVAHLRAHTPFGA"
     gene            complement(1054..>1542)
                     /locus_tag="VGN19_00190"
     CDS             complement(1054..>1542)
                     /locus_tag="VGN19_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEV7194332.1"
                     /translation="EHRMWLFNQYHQAIANEVVPAIHGDSAGPQPIVAVGASIGAFNA
                     LAMVCRWPELFNAAVCMSGTYQVERFIGGPVTDDWYFASPLYFLPGLGGPALDLLRQR
                     FVILASGSGRWEDVGESWAAAKALGDKGIPNRVDDWGSGYDHDWPTWWEMVPLYLDDL
                     VP"
BASE COUNT          245 a          569 c          525 g          203 t
ORIGIN      
        1 gcgcgccgaa gggcgtgtgc gcccggaggt gggcgacgag caggtcctgg gcagccttgg
       61 cgtcgacggt cggtggcacg cgcaggttga ccacggcccg ggcctcaccc tgggcagcgg
      121 cggtcacctg cgagatgggc gggcagtcaa tggcgaggac ggttgcagct ggccgagccc
      181 agagccggtc ggcgatggtc gcctcacccg tcagcggctc gacgccgccc agcagcgccg
      241 catcctcgcg gaaccgctca ctgtcgaagg cctcgccctc ccagaccccg tcgtgcgcca
      301 ggccgtcgat cgtggtctcg cccgactcgt cgcgcaggct ggcgagcgcc atcaacagcg
      361 cctggagggc atcgggtgcg gcgccgccgt acatcccgga gtgcgcgggg tgggccatcg
      421 tccgcacggt catcagcacg ctgcccgtcc cccgcagtga cgtcgtgaga gtcgggtgac
      481 caccggcgac atttccggtg tcagcgagga cgaaggcgtc acaggccacc agctcggggc
      541 gcgaccgggc caggtcctcc atgccaccgc tggactgttc ctccgagccc tcgcacacga
      601 ccgccacctc gaccggccac ctgcccagca cctcgctcag ggcgcgcagc gcgagcagca
      661 tcgccaccag gttgcccttg cagtcggcgg caccacggcc gtaccaccgg cccgcccgct
      721 cggtcagctc gaagggctgg gtcgaccagg catcgaggtc accggccggg acgacgtcgt
      781 agtgggagta gagcaccacg ctgggcgaca acgcgggtcc ggcggagcga cccacgacgg
      841 ccagcgacgc gtccgccgtc tcgacggcct cgatccccgc cacccccgcc tctgcgaaca
      901 gctcgaccac cagcgccgct gctgcctgac actccgactc cggctctatc gcggggttgg
      961 ccaccgagcg cagcgcaacc aggcgcgcga gctcgtcgcg cgcacgcggc ataccggatt
     1021 cgattgcggc agcgagcgac tcggcgagag cggtcacggg accaggtcgt cgaggtagag
     1081 cggcaccatc tcccaccacg tgggccagtc atggtcgtag ccgctgcccc agtcgtccac
     1141 gcggttcggg attcccttgt cgcccaaggc ctttgctgcc gcccacgact cgccgacatc
     1201 ttcccagcgc ccactccccg acgcgaggat gacgaaccgc tgccggagca ggtcgagagc
     1261 cgggcccccg agacctggga ggaagtagag cggcgaggca aagtaccagt catcggtcac
     1321 cgggccgccg atgaagcgct cgacctggta ggtgccgctc atacataccg cagcgttgaa
     1381 cagctccggc cagcggcaga ccatcgccag ggcgttgaag gcaccgatcg acgcgccgac
     1441 agcaacgatg ggctgagggc cggcgctgtc cccgtggatg gccggcacga cctcgttcgc
     1501 gatcgcctgg tggtactggt tgaacagcca catccggtgc tc
//
LOCUS       DASYFY010000010         2670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1366908, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000010 DASYFY010000000
VERSION     DASYFY010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1366908"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VGN19_00195"
     CDS             <1..218
                     /locus_tag="VGN19_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017823203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194333.1"
                     /translation="YAAIWRALPGPLPVRILLALVLLVVVVACCFLWLFPRIAPVMPF
                     NDNTVNPSGGGSAAHSVYPAAYPAGSW"
     gene            224..880
                     /locus_tag="VGN19_00200"
     CDS             224..880
                     /locus_tag="VGN19_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEV7194334.1"
                     /translation="MTRILVVDNYDSFVFTIVGYLQQLGAECEVVRNDAVSPQDGADF
                     DGVLVSPGPGTPEEAGVSMAMIEACAGRAQPMLGVCLGHQALGVVCGATVGRAPELLH
                     GKTSQVLHDGSGVLAGLPSPFTATRYHSLTIDPPTLPAELVPNGHTSSGIVMGVRHRD
                     LPLHGVQFHPESVLTRGGHRLLANWLELCGAADAVARSAGLTPLVHDAEGVAQAVSAD
                     "
     gene            complement(916..>2670)
                     /gene="pknB"
                     /locus_tag="VGN19_00205"
     CDS             complement(916..>2670)
                     /gene="pknB"
                     /locus_tag="VGN19_00205"
                     /inference="COORDINATES: protein motif:HMM:NF033483.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEV7194335.1"
                     /translation="PVAIKMLRSDLARDTSFLNRFRREAQSAAGLNHAAIVAVYDSGE
                     DHTTQVGGAAQPIPYIVMEYVEGKTLRELLNERSPLEPAEAARITEGILDALAYSHRM
                     GIVHRDIKPANVMIGLQGEIKVMDFGIARAVADANATMTQTQAVIGTAQYLSPEQAQG
                     HSVDARSDLYSTGCLLFELLTGRPPFQGDSPVAIAYQHVGEAPPRPSAFNPHVTPAID
                     AVVLHSLAKDREARYQDATAFRADLQAARLGRPISDAARGTALASSEATMAISGVAAG
                     AATTLIPSGGYAGAAEPVHGNTATLPAIGHDPDDEPRKRRGLGYFLLVLGVLACLALL
                     FLAGRSLLDQPSAAAAKVSVPSVIDKPVETASAEVRAAGLAPQTNNVASSKAVGTVVD
                     QSPPGGEQVARGATVTLSVSSGPDTVALPDLKGYSQDEAKTLLTSLGLKLGTTNQVDD
                     TNVDKGKIISTDPAAGQTVAVGSAVNLNVSSGLVTVPAVTGKLRSDAAAQLSDLGFTI
                     KTTYVTSTQTEDTVLKQSLKASDKVPYGSTIVLTVAQPAPPTPTPTTTTTTPTPTTST
                     TTATLPIPGISSTSKPTP"
BASE COUNT          365 a          892 c          954 g          459 t
ORIGIN      
        1 gctatgccgc catctggcgc gccctgcctg ggcccctgcc ggtgaggatc ctcctcgccc
       61 tcgttctgct cgtggtggtc gtcgcctgct gcttcctgtg gctcttccca cgaatcgcac
      121 ccgtcatgcc gttcaacgac aacaccgtga accccagcgg gggcggctcg gccgcccact
      181 cggtgtaccc agcggcatac ccagcggggt cttggtgagt ccggtgactc ggatcctcgt
      241 cgtcgacaac tacgacagct tcgtcttcac gatcgtcggc tatctgcagc agctgggcgc
      301 ggagtgcgag gtcgtgcgta acgacgccgt ctcaccccag gacggtgccg acttcgacgg
      361 agtgctggtc tcgcccggcc ctggcacccc cgaggaagcc ggagtgtcga tggcgatgat
      421 cgaagcgtgt gccggccggg cgcagccgat gctgggcgtg tgcctcgggc atcaggcgct
      481 gggcgtcgtc tgcggtgcca ctgtcggccg cgcccccgag ctgcttcatg gcaagacctc
      541 gcaggtcctt catgatgggt ccggcgtctt ggccgggctg ccgagcccct tcacggcgac
      601 caggtaccac tcgctgacga tcgacccgcc gacccttccg gccgagctcg tgccgaacgg
      661 gcacaccagc agcggcatcg tcatgggcgt gcgtcaccgg gacctgcccc tgcacggcgt
      721 gcagttccac cccgagagcg tgctgacccg gggagggcac cgcctcctgg ccaactggct
      781 ggagctctgc ggggcagctg atgccgtcgc gcggtcggcg gggctgaccc cgctggtcca
      841 tgacgccgag ggcgtcgctc aagccgtctc ggccgactaa cacctcacga accggtcgcc
      901 gggccgccta ccagctcagg gtgtcggctt cgacgtcgag ctgatcccgg ggatcggcaa
      961 ggtggcggtg gtcgtcgagg tcgtcggcgt cggggtcgtc gtcgtggtcg tcggcgttgg
     1021 ggtcggcgga gcgggctggg caaccgtcag cacgatggtg ctcccgtaag gcaccttgtc
     1081 gctcgccttg agactctgct tgagcacggt gtcctcggtc tgggtactcg tgacatacgt
     1141 cgtcttgatg gtgaacccga gatcgctgag ctgggcggcc gcgtcgctgc gcagcttgcc
     1201 cgtaacggcg ggaactgtga ccaagccgga cgagacgttg aggttgaccg ctgacccaac
     1261 ggccaccgtc tgtccggcgg ccgggtcggt cgagatgatc ttgcccttgt cgacgttggt
     1321 gtcgtccacc tggttcgtgg tgccgagctt gagtcccaga ctggtcagca aggtcttggc
     1381 ttcgtcctgg gagtaaccct tgagatcagg caacgcgacg gtgtccggac cgctggagac
     1441 gctcagcgtc accgtcgcgc cgcgcgccac ctgctcgcca ccgggcggac tctggtcgac
     1501 gaccgtgccc acagccttgc tactcgccac gttgttggtc tggggggcca gccctgcggc
     1561 acggacttcg gcgctcgcgg tctcgaccgg cttgtcgatc acgctaggca ccgacacctt
     1621 ggccgcggcg gcggagggct ggtcgagcag ggaacggcca gcgaggaaca acagcgcgag
     1681 gcaggcgagc acgcccagga ccagcaggaa gtagcccagc ccgcgccgct tgcgcggctc
     1741 gtcgtccggg tcgtgaccga tggccggcag cgtcgcggtg ttgccgtgca ccggttctgc
     1801 tgcgccggca tacccaccag aggggatgag ggtcgtcgcc gccccggcgg ccacgccgga
     1861 gatcgccatg gtcgcctcgc tggaggcgag ggcggtgcca cgcgctgcgt cgctgatcgg
     1921 acggcccagc cgtgcggcct gcaggtcggc acggaaggcg gtggcgtcct ggtagcgcgc
     1981 ctcgcggtcc ttggcgaggg agtgcagcac caccgcgtcg atcgctggcg tgacgtgggg
     2041 gttgaacgcc gacggccgcg gcggtgcctc gccgacatgt tggtacgcga tggcgaccgg
     2101 ggagtcgccc tggaacggtg ggcgaccggt cagcagctcg aacagcaggc atccggtcga
     2161 gtacaggtcg gagcgcgcgt cgaccgagtg accctgcgcc tgctccggtg agaggtactg
     2221 ggcagtgccg atgacggcct gcgtctgggt catggtggcg ttggcgtccg caacggcgcg
     2281 ggcgatcccg aagtccatga ccttgatctc gccttggagg ccgatcatga cgttggccgg
     2341 cttgatatcg cggtggacga tccccattcg atggctgtag gccagcgcgt ccaagatgcc
     2401 ctcggtgatc cgggcggcct cggcaggctc cagcggagag cgctcgttca gcagctcgcg
     2461 cagcgtcttc ccctcgacgt actccatgac gatgtagggg atgggctggg ccgcgccgcc
     2521 gacctgggtc gtgtggtcct caccggagtc gtacaccgcg acgatggccg catggttgag
     2581 ccccgcggcc gactgcgcct ctcgccggaa cctgttcagg aacgaggtgt cgcgcgccag
     2641 gtcggagcga agcatcttga tcgccaccgg
//
LOCUS       DASYFY010000011         2617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_263329, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000011 DASYFY010000000
VERSION     DASYFY010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263329"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VGN19_00210"
     CDS             <1..480
                     /locus_tag="VGN19_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194336.1"
                     /translation="EPWVKSVGCPASPSAHRRETLDIAAGPRATVADLPRPHEPPSTR
                     ALPGCADGPEPQPGQNGHHVAERNAGVRQPELADAQNDQPGDEASTRTHRAQDPWQQH
                     ERDGKFRHGRRHHRQPGLLRGQGQCLASALIAVGLAGFAYWRMPAVRAEGQMAHMRH"
     gene            566..1141
                     /locus_tag="VGN19_00215"
     CDS             566..1141
                     /locus_tag="VGN19_00215"
                     /inference="COORDINATES: protein motif:HMM:NF019544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194337.1"
                     /translation="MTGKAIVLVGVSSVGKTTVARQLQLALREPYLHVGLDHFFSMFP
                     YEWRDHPRGPGPGFWVDKTADAAGCPRSRICYGDAGAQLLAGMRAAVNALLAGGNNVI
                     LDGMPIDDSIMPAWRRELRASCTTWVRLTASLPILEERERARTTGQQVGNSRGHFDVS
                     AGEEWDLVIDTGDLTPSETAARIVAALGIPD"
     gene            complement(1194..1838)
                     /locus_tag="VGN19_00220"
     CDS             complement(1194..1838)
                     /locus_tag="VGN19_00220"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEV7194338.1"
                     /translation="MKLSIIATARSVHVRADLRRAGAAAAFSFVVLVVLAAFGVPQSP
                     QLTPRLFTFLGAVVFAVSGAISVRSTANELARVVGVRASAGTASNLRLWVTMIGYVLV
                     GLLALTVLHVPIEKLLLSGAITGVVIGIAAQQALANLFAGLVLLTSRPFDVGSWIVLK
                     SGALGGDYHGQVVGIGLTYTEIITEDGPFSLPNASVLAAATGPRTPPEASSRVA"
     gene            2080..2568
                     /locus_tag="VGN19_00225"
     CDS             2080..2568
                     /locus_tag="VGN19_00225"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEV7194339.1"
                     /translation="MPLVALVATYTLFLVLLIAAGAWLTLDRPRKVELVVAGVLTLVV
                     VGAFIVVTSAIWTDPRPFMVDGVPPAIPHAADNGFPSDHTAAAAAVAGLVLAYRRRIG
                     ILLVLLAVVVGLSRVAAHVHHVPDIIGGLAIGLIAAAIGIMLTRLGLRARATRQAASR
                     AS"
BASE COUNT          409 a          890 c          944 g          374 t
ORIGIN      
        1 gagccatggg tgaagtctgt gggctgccct gcctctccgt cagcccatcg gcgcgaaacg
       61 ctggacatcg cggcaggtcc gagggcgacg gtggccgacc taccccgtcc ccacgagccg
      121 ccgagcaccc gggcactccc agggtgcgcc gacggccccg agccgcagcc cgggcagaac
      181 ggccaccacg tggccgagcg caacgccggc gtgcgccagc cagagctggc cgacgcccag
      241 aacgaccagc ccggtgacga ggcttcgacg cggacccacc gcgcgcagga tccgtggcag
      301 cagcacgaga gagacggcaa attccgccac ggacgtcggc accatcgcca gcctggcctg
      361 ctgcggggcc agggccagtg cctcgcatca gcactgatcg ccgtgggcct ggccggcttc
      421 gcctactgga ggatgcctgc cgtgcgagcc gagggtcaga tggcgcacat gcgccactga
      481 cgtgcgccac gagcgccaca tgctgccgcg cagcagtgcc gatccgaggg ctcgccgagc
      541 cggttgcgcc tgcgagactg ccggtgtgac cggtaaggcg atcgtgctcg ttggcgtgtc
      601 cagcgtcggg aagacgacgg ttgcgcgaca gctgcagctg gcgcttcgtg agccctacct
      661 gcacgtcggc ctcgaccact tcttctcgat gttcccctat gagtggcgcg accatccccg
      721 cggtcccggt ccgggattct gggtcgacaa gaccgctgat gcggccggat gtccccgctc
      781 caggatctgc tacggagacg ccggcgctca gctgctggcc gggatgcgtg cggcggtcaa
      841 cgctctgttg gcggggggta acaacgtcat cctcgacggg atgcccatcg acgactcgat
      901 catgccggcg tggcgtcggg agctacgcgc ttcctgcacg acctgggtgc ggctcacagc
      961 ctcgctcccc atcctcgagg aacgcgaacg tgctcggacc acggggcagc aggttggcaa
     1021 ctctcgcggt catttcgacg tgtcggcggg cgaggaatgg gatctcgtca tcgacaccgg
     1081 cgacctcacg ccgtcagaga ccgctgctcg aatcgtggca gcactcggca ttcccgacta
     1141 gacgctcgca tgcggtcggt cgacgtcgag cggagcaacg ccgtcctcgg gcgtcacgcg
     1201 accctgctgg aggcctcggg aggggtgcgc ggaccggtgg ccgcggcgag gacgctcgcg
     1261 ttgggcagtg agaacgggcc gtcctcggtg atgatctcgg tgtacgtcag gccgatgccg
     1321 accacctgac cgtggtaatc gcctccgagg gcgcccgact tgagcacgat ccaggagccg
     1381 acgtcgaacg gcctcgaggt gaggaggacg aggccggcga agagattggc cagagcctgc
     1441 tgggcggcga taccgatgac gacaccggtg atcgcgccgg agaggaggag cttctcgatc
     1501 ggcacatgca gcaccgtcag ggccagcagc ccgacgagca cgtagccgat catcgtcacc
     1561 cagaggcgca ggttcgacgc ggtgccggcg ctggctcgga caccgacgac gcgggcgagc
     1621 tcgttcgcgg tggaacggac cgagatggcg ccgctgacgg cgaagacgac agcaccgagg
     1681 aaggtgaaca ggcgcggcgt cagctggggc gactgcggca cgccgaacgc cgcgaggacc
     1741 accagcacga cgaaggagaa ggccgcggcg gcgccggccc ggcgaaggtc ggcccggacg
     1801 tgcaccgagc gggcggtggc gatgatggac agcttcacag gcaggtgact cccgggtgta
     1861 gaggtggacg ggtcttgggg cggacggtca ggcgctgcac ccccgaggcg gcccgtgcga
     1921 acgcaagacg gtaacggctc caccttgacg cgacccgaga gccgtccttg gctggcaggt
     1981 ccccgcgtgc acccgtcaca ctgctcggtc gcccgcgggg cggccgaggt ctgcgcccct
     2041 cccagcaggg acacaggagg gagcatgcat catggacgga tgcctctcgt agccctggtg
     2101 gcgacctaca ccctcttcct cgtgctcctc atcgcagccg gagcgtggct cacgctggac
     2161 cggccgcgga aggtcgagct cgtggtggcg ggggtgctga cgctcgtggt ggtcggggcg
     2221 ttcatcgtgg tgacaagcgc catctggact gaccccaggc ccttcatggt cgacggagtg
     2281 cccccggcga ttccgcacgc tgccgacaac ggcttccctt ccgaccacac ggcggcggcg
     2341 gcggccgtgg cgggtctcgt gctggcgtac cgacggcgca tcggcatcct gctggtgctg
     2401 ctggccgtgg tcgtgggcct gtcacgcgtc gccgcccatg tgcaccacgt gcccgacatc
     2461 atcggtggcc tcgcgatcgg gctgatcgca gcggcgatcg gcatcatgct gactcggctc
     2521 gggctgcgtg cacgggcgac ccggcaggcc gcgtcacgcg cctcctgacc tcggccttcc
     2581 gggtcaggga tggtgcctca ggagccgtcg ggagcac
//
LOCUS       DASYFY010000012         1642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_263331, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000012 DASYFY010000000
VERSION     DASYFY010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263331"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..1591
                     /locus_tag="VGN19_00230"
     CDS             398..1591
                     /locus_tag="VGN19_00230"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S53 family peptidase"
                     /protein_id="HEV7194340.1"
                     /translation="MRTPLASLALVAAATLGLVSATVTSAAAVSPRAHAVRVCSSSTS
                     PAVAACRAVKLVDESGLPVSPSGKRVSPSAVSGKTPADIQSAYKLAGLSAAGRTVAIV
                     DAYGYPNAASDLTTYRTHFKLPACTTSTGCLRIIDQKGGTTRPAFNTGWAQEQALDLD
                     AVSAACPSCTILLVQASTSSLADLGTAVNTAAQQAGVAAISNSYGAGDLADSSYGSYY
                     NHPGIAVTASTGDNGYQGGSFPASSQYVTAVGGTSLVKASSTRGWSESAWSGAGSGCT
                     TLNSAPTGQTPTMTSCSGRAIADVSADADPSTGLAVYAPMSSSSSAWAQFGGTSLSSP
                     IVASVYALSGHTAGYANTLPYAHTSGLFDVTSGSNGTCASWCAAKAGWDGPTGLGTPN
                     GTSAF"
BASE COUNT          260 a          632 c          518 g          232 t
ORIGIN      
        1 ggtcgggttg agggtctcga cggcactctt cactgcgcag tactccagaa tcatggggca
       61 acgggaaagg cccgcgcacc gcgaagggcg cggcaaccgg gccaaaacct catggtagcc
      121 gctgtgagac ccctgaccga acgcgggcac acgcgcaccg ggcagcccgg actcggcata
      181 ccccagtcac acgtggtgct gaggaacctc tgacgtgacg gagagaggga tttgaccctt
      241 atcgggggct tcattcaagg gttcgcccgt gtttgttcaa gacttgtccg gatttgggtc
      301 agattccacc aagccccttg agacgcctcg ggcccgccga gatgctccgc acaggccgac
      361 agctcgtcgg ctttctccgg gccccaggag ctgctcgatg cgtacccccc tcgcgtccct
      421 cgcgctcgtc gccgcggcca ctctcggact cgtcagcgcc acggtcacgt cggccgcggc
      481 cgtctccccc cgcgcccacg ccgtgcgcgt ctgcagcagc tccacctctc ccgccgtcgc
      541 ggcctgccgg gcggtcaagc tggtcgacga gtcggggctg ccggtcagcc cctcgggcaa
      601 gcgcgtctcg ccgtcggcgg tctcgggcaa aaccccagcc gacatccaga gcgcctacaa
      661 gctcgccggc ctcagcgccg ccgggaggac cgtcgccatc gtcgatgcgt acgggtaccc
      721 caacgcagcc agcgacctca ccacctaccg cacccacttc aagctgcccg cctgcaccac
      781 ctcgacgggc tgcctgcgca tcatcgacca gaagggcggg accacccggc cggccttcaa
      841 caccggatgg gcacaggagc aggcgctcga cctcgacgcc gtctcggccg cctgccccag
      901 ctgcacgatc ctcttggtcc aagcctcgac gtcgagcctg gccgacctcg ggacggcggt
      961 gaacacggcc gcgcagcagg ctggggtcgc tgccatctcg aacagctacg gcgccggcga
     1021 cctggcggac tcgagctacg gcagctacta caaccacccc ggcatcgccg tcacggcttc
     1081 gacgggtgac aacggctacc agggcggcag cttccccgcc tcctcgcagt acgtcaccgc
     1141 ggtcggcggc acgtcgctgg tcaaggcgtc gagcacccgc gggtggtccg agtcggcatg
     1201 gagtggcgcg ggctccggct gcaccaccct gaactccgcg cccaccgggc agacgccgac
     1261 gatgacgagc tgcagcggtc gggccatcgc cgacgtctcg gccgacgccg acccgagcac
     1321 cggtctggcc gtctacgcgc ccatgagcag ctccagctcc gcctgggccc agttcggcgg
     1381 cacgagcctg tcctcaccca tcgtcgcctc ggtctacgcg ctgagcggcc acaccgcggg
     1441 gtacgcgaac acgctgccct acgcccacac cagcggcctc ttcgacgtca cctcgggcag
     1501 caacggcacc tgcgcctcat ggtgcgcggc caaggcgggg tgggacggac cgaccgggct
     1561 cggcaccccg aacgggacaa gcgccttcta gcttcaacct gacggcgaca ccggcgtccg
     1621 acgcgcctag gttgtctgca tg
//
LOCUS       DASYFY010000013         2480 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1629693, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000013 DASYFY010000000
VERSION     DASYFY010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1629693"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1001)
                     /locus_tag="VGN19_00235"
     CDS             complement(<1..1001)
                     /locus_tag="VGN19_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017203769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7194341.1"
                     /translation="MRARTHHAPWSVTVAVAASLAVAACAPPASNSSGSGSSQGASSA
                     TSAKDLGGMDQLVAAAKKEGTLNVIALPPDWANYGAIIKAFGDKYGIKVNSAQPDASS
                     ADEITAAQRLKGQSSAPDVFDLGAAVANANTSTFAPYKVTTFDSIPANLKDASGTWVN
                     DYGGYMSIGYDSSKVPAPTSVADLLKPAYKGKVALNGDPTKAGAAFAGVQMVSLANGG
                     TVSDVAKGVDFFKKLKAAGNFLPVDPTPATIASGQTPVVFDWDYLNAAQSAKVKNWKV
                     FVPPNAVLGGYYVQAVSKDAPHPAAARLWQEFLYSDAGQNLWLKGGARPVRFDDMKKA
                     "
     gene            1156..>2480
                     /locus_tag="VGN19_00240"
     CDS             1156..>2480
                     /locus_tag="VGN19_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone dehydrogenase"
                     /protein_id="HEV7194342.1"
                     /translation="MNAHGASVVILGGGPGGYEAALVAVHLGASVTVVDRDGLGGAAV
                     LTDCVPSKALISEGDETSEAPGSVVELAAVNSRVLALAAAQSRDIGSRLAGDGVTVLA
                     GTGRLVSAGQVQATLADGSVQTLTADVVLLATGATPRVMSTAQPDGERILTWQQIYSL
                     TELPEHLVVVGSGVTGAELAQAYLSLGARVTLVSSRDRVLPGEDADAATVIEDVFRKR
                     GMEVLGRSRMAAVTRTATGDGVVVRLEDGREVEGSHALLAVGSVPQTAGIGLAEAGVA
                     LTDSGHVAVDRVSRTSVRGVYAAGDCTGVLPLASVAAMQGRIAMAHALGDAVAPLNLR
                     AVSANIFTDPEIATVGFSQKDIDEGRVDASSVMLPLSTNPRAKMQGITDGFVKLFARR
                     GTGTVVGGVVVAPRASELIYPVTLAVQHGLTVDQLAGTFTVYPSLSGSVA"
BASE COUNT          343 a          791 c          902 g          444 t
ORIGIN      
        1 gccttcttca tgtcgtcgaa ccggaccggg cgtgcgcccc ccttgagcca gaggttctga
       61 ccggcgtcgg agtagaggaa ctcctgccac agccgagccg ccgcggggtg cggagcgtcc
      121 ttgctcacgg cctggacgta gtagccgccc aggaccgcgt tcgggggcac gaacaccttc
      181 cagttcttga ccttcgcgct ctgcgccgcg ttgaggtagt cccagtcgaa gaccaccggg
      241 gtctgaccgg acgcgatggt ggccggcgtc gggtcgacgg gcaggaagtt gccggccgcc
      301 ttgagcttct tgaagaagtc gacgcccttg gcgacgtccg agaccgttcc gccgttggct
      361 agggacacca tctggacacc ggcgaaggca gcgccagcct tggtcgggtc cccgttgaga
      421 gcaaccttgc ccttgtatgc cggcttgagc aggtcggcga ccgacgtggg cgccgggacc
      481 ttcgaggagt catagccgat ggacatgtag ccgccatagt cgttgaccca ggtcccgctg
      541 gcgtccttga ggttcgccgg gatcgagtcg aacgtcgtca ccttgtaggg cgcgaacgtc
      601 gaggtgttgg cattcgcgac ggctgcgccg aggtcgaaga cgtcgggggc cgaggactgt
      661 cccttgagtc gctgggcggc cgtgatctcg tctgcgctgc tggcgtcggg ctgggcgctg
      721 ttgaccttga tgccgtactt gtcgccgaag gctttgatga tggcgccata gttggcccag
      781 tccggaggaa gggcgatgac gttgagggtc ccctccttct tggccgcggc gacgagctgg
      841 tccatgccgc cgaggtcctt ggcggaggtg gctgaggagg cgccctgact gctgccggag
      901 ccgctcgagt tgctggccgg gggtgcacag gctgcgactg ccaggctggc tgctactgcc
      961 acggtgacgg accacggtgc gtggtgggta cgagctctca tctgtccatc ctgtgttcag
     1021 gcccgacgcg tcgggcggcg agtatgccgt tgcggacagt atggctcgta ggcgacagat
     1081 cggctggacc tcggagaaca gccgatgaac acggctgggc caaaggcccc aggtccctga
     1141 tggttggata ggcccgtgaa tgcgcacgga gcctcggtcg tcatcctcgg aggcggcccc
     1201 ggtggctacg aggccgcgct cgtcgctgtc catctggggg cctcggtcac cgtggtggat
     1261 cgcgacggcc tgggtggcgc tgctgtgttg acggactgcg tgccctccaa ggcgctcatc
     1321 tccgagggcg acgaaacgtc cgaggccccg gggtccgtgg tcgagctggc tgcggtgaac
     1381 agccgggtgc tggcgctggc cgctgcccag tcgcgcgaca tcggctcgcg gctcgctggg
     1441 gacggcgtca cggtcctggc cgggaccggt cgcctggttt cggccggaca ggtgcaggcg
     1501 accctggccg atggttccgt tcagaccctc acggctgacg tcgtcctcct tgccacggga
     1561 gcgaccccgc gggtgatgtc tacggcccag ccggacggtg agcgaattct gacgtggcag
     1621 cagatctact cgttgaccga gctaccggaa cacctcgtcg tcgtgggctc cggtgtcacg
     1681 ggggccgaac tggcacaggc ctacctgagc ttgggcgcac gcgtcaccct ggtctcatcg
     1741 cgcgaccggg tgctgccagg cgaggacgca gatgccgcga ccgtcatcga ggacgtgttc
     1801 cgcaagcgag gcatggaggt gctgggccgg tcgcgcatgg cggcggtgac ccgtactgcc
     1861 actggtgacg gcgtcgttgt gcggcttgag gacggtcgcg aggtggaggg cagccacgcc
     1921 ctgttggccg tgggctccgt gccgcagacc gcgggcatcg gtctggctga agcgggggtc
     1981 gcgctcaccg actcggggca cgtcgccgtg gatcgggtct cgcgcacctc ggtgcgtggg
     2041 gtgtatgccg ccggcgactg caccggtgtc ctcccgctgg cttcggtggc tgcgatgcag
     2101 ggccgcatcg cgatggccca cgcgctgggc gacgctgtcg cgccgctcaa cctgcgcgcc
     2161 gtatcggcca acatcttcac cgatcccgag atcgcgaccg tcgggttctc gcagaaggac
     2221 atcgacgaag ggcgggtcga cgcctcgtcg gtcatgctgc cgctgtccac aaacccccgg
     2281 gccaagatgc agggcatcac cgacgggttc gtcaagctgt tcgcccggcg aggtaccgga
     2341 acagtagtcg gcggggtggt ggtcgcgccg cgggcctccg agctcatcta tccagtcacc
     2401 ctggccgtcc agcacggtct gacggtggac cagctggcgg ggaccttcac cgtgtacccc
     2461 tccctttcag gttccgtagc
//
LOCUS       DASYFY010000014         7046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1209373, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000014 DASYFY010000000
VERSION     DASYFY010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7046
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209373"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VGN19_00245"
     CDS             <1..319
                     /locus_tag="VGN19_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194343.1"
                     /translation="VGFDLARTFNPPTRLGSATGIVNVGGFLASLSTVTLIGFILDRL
                     APHGPSTYTVETFKAAMSVQYVVWTIGVVQILRYRRKARRGLRESDPDAYAALRAGRS
                     ILP"
     gene            566..1930
                     /locus_tag="VGN19_00250"
     CDS             566..1930
                     /locus_tag="VGN19_00250"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEV7194344.1"
                     /translation="MPRTQAVRRAHRGVATLAIVGIFASVPALAASADPGPVFPSQQQ
                     VDGAKAAVVGAAGQIAALDAQYAAASARLVQVQDKAAAAGEAYNGAKFRLDQATAATA
                     AAQQRAAAAQTVADAAQLVVRRYAATAYQQGGSFGEFEAFLSASGPQDMMDRATALQA
                     VGDARARTLEKAAATSIVADLLKRQAAQAQAQQQKAAEDARRAHDAAQAEADRAQAAT
                     TQIQTQQHAMVIQLAKLRKTSVTLEKQRQDGLAAAAAARAAALEAARQARLAAARAQA
                     ARDAAARAAAQQAAARAAAQAASQQAAAAAAQAASDALARQTRPSPPPVYSPPPPPPS
                     QNGGVSAVLNYAYAQLGKPYVWGASGPDAFDCSGLTQMAWAQAGVNLYHYTGAQWDQT
                     SRVALSDLQPGDLVFFGTDGPSSEHVGIFIGNGQMIDAPHSGATVRIESMYWDNLLPY
                     GGRP"
     gene            complement(2036..2593)
                     /locus_tag="VGN19_00255"
     CDS             complement(2036..2593)
                     /locus_tag="VGN19_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEV7194345.1"
                     /translation="MEFDVTIEIPKGHRNKYEVDHETGRIRLDRLLFTSTRYPADYGY
                     VEDSLGEDGDPLDALVLLEEPTFPGCLVRVRPIGLFHMRDEAGGDDKILCVPASDPRQ
                     AHLTELDQVSEFDRLEIQHFFETYKDLEPGKSVEGAHWAGREEAEQAVREAIERAKRA
                     GMTTARWRMPAVHAEPMDDSGTSSS"
     gene            2685..4121
                     /locus_tag="VGN19_00260"
     CDS             2685..4121
                     /locus_tag="VGN19_00260"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEV7194346.1"
                     /translation="MRRFLAALLVLGILAAAYATLDLFDVVPGVLTRSAPPVRPSPSA
                     VRRPVVPAVPIPTIDAGAQPLQGVSASAPIPVAAALKSTLGAALVDPALGPHPGFVVR
                     DAFTGQDLLVQDADRPRVAASTGKLLAALAVVSSLDPHATMPTTVVQGASPAEIVLVA
                     GGDTMLAAGAGDPTVVEGHAGLADLASQVATALRASGATAVKLRLDTTYAAGPRWAPG
                     WPNADVTSGYTGGVSMLGLAGQRATPGKPAPRDPEAAVAGAFVADLKAVGVTATVEPE
                     ASWSTPTVSTAPVLGTVRSAPIGEVLALALDDSDNALTEGLARQAAVKAGYPATFPGA
                     VAFVAKQVAAQGVDLTGVTLKDTSGLTAGQAIPPRVLADVLQLGTDGSDAALQDAVAR
                     LPVAGLSGTLHDRFLAKSTHAVAGIARAKTGTLTGASAMAGTVVDADGRLLSYVVVAD
                     GIPAGAGTLNARAALDRFVAALATCGCR"
     gene            4136..5209
                     /locus_tag="VGN19_00265"
     CDS             4136..5209
                     /locus_tag="VGN19_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEV7194347.1"
                     /translation="MTVSDVPPTKAPSARYVDWEFAKSAGARLAPPGPKVTPLEAAQV
                     VAEVRAAALRAQQPVAETARLHAPGDAPGPLVVDRPTWIALNADSMSALMDPVFGKLV
                     GVKAPSEAMKAVGGKVTGAEAGALLAFMSGKVLGQYDLAPGGTPRLMLVAPNLVQVER
                     ELGVDPGDFRLWVCMHEETHRVQFTAVPWLRDHMVHRIRTLAGDLVPDPESLQETLSR
                     LGHQLPEALKSGGAGLADLIASPEQRAELAKVTAVMALLEGHADVVMDEVGPKVIPSV
                     AQIRGRFNERRKGVGTFDRLLRRLLGLEAKMRQYRDGAVFVREVTEAVGVDGFNAVWS
                     SPDTLPLPAEIEKPSAWVARVHG"
     gene            5236..6216
                     /gene="tilS"
                     /locus_tag="VGN19_00270"
     CDS             5236..6216
                     /gene="tilS"
                     /locus_tag="VGN19_00270"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013769726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEV7194348.1"
                     /translation="MSGPDPATAAIRLAVRAVLAECLTGELVLVACSGGADSLALAAA
                     TAFEARHLGLRAGAVVVDHGLQDGSAMVAQAAGDTCRGVGLDPVVVVRTDVPRVSGGP
                     EAAAREARYAALSAAADDHRARLVLLGHTRDDQAEQVLLGLARGAGARSLAGMPRARD
                     RFRRPLLGIARQQTRASCTHLELRWWEDPMNADPAYARVRARRALLDLERDLGPGVSA
                     ALARSADQLREDADHLDSLSRQAVAALGPGPWEVGQLAALPRAVRTRVWRLLTVAAGA
                     PAGQVSTRHTEACDALLTGWHGQGPVSLPGPLLARRAGGRVSIGAPDPVE"
     gene            6284..6835
                     /gene="hpt"
                     /locus_tag="VGN19_00275"
     CDS             6284..6835
                     /gene="hpt"
                     /locus_tag="VGN19_00275"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEV7194349.1"
                     /translation="MDAAHMGADLEKVLITEEEIHARLEELAAEVWAEYEGKDLLLVG
                     VLKGAVMVMADLSRALPGTAPVDWMAVSSYGSGTKSSGVVRILKDLDTDITGKHVLIV
                     EDIVDSGLTLSWIRSNLESRSPASVEICTLLRKPDAAKVQIDVRWVGFDIPNEFVVGY
                     GLDYAEKYRNLRVVGTLAPHVYA"
BASE COUNT         1000 a         2556 c         2442 g         1048 t
ORIGIN      
        1 ggtgggcttc gacctcgctc gcaccttcaa ccccccgacc cgcctgggca gtgccaccgg
       61 catcgtcaac gtcggcggtt ttctggcgtc gctgtccacc gtgaccttga tcggattcat
      121 cctcgaccgg ctggctccgc acggcccgag cacctacacg gtcgagacgt tcaaggcggc
      181 gatgtcggtg cagtacgtgg tctggacgat cggggtcgtg cagatcctca ggtaccgccg
      241 caaggcccgc cgtggtctgc gcgagagcga cccagatgcg tatgccgcgc tgcgcgccgg
      301 gcgctcgatc ctcccctgag cgcccgaaag tggctcctga cctgcaaaaa cagcagatgt
      361 gttatggatt tgttatgaat cgtggacatc tgatcgaaac ggcgaggcca cctgctgaaa
      421 aacacccgtg taactaggct aatcacaacc atgtgatatc tcccatggcc tgacagtagt
      481 gggatttttg ggacgagagt gtttggagtg aaaatccggg cttacgctcg tgcggctgag
      541 tcccaccgac cgagaggcat cccccgtgcc ccgcacacaa gccgtccgcc gcgctcatcg
      601 cggcgtggcc acgctcgcga tcgtcggcat cttcgcgtcc gtcccggctt tggcggcctc
      661 cgctgacccg ggaccggtgt tcccctcgca acagcaggtg gacggggcca aggccgcggt
      721 ggtgggggcc gccggacaga tcgccgccct cgatgcgcag tacgccgcag ccagtgcccg
      781 actcgtgcag gtccaggaca aggctgcggc cgcaggtgag gcttacaacg gggccaagtt
      841 ccggctggac caggccactg ccgcgaccgc cgcggcacag cagcgcgccg ccgcggccca
      901 gaccgtcgcg gacgccgctc agctggtcgt ccgtcgctac gcggccaccg cgtaccagca
      961 gggcggcagc ttcggtgagt tcgaagcctt cctgtccgcc agcggacccc aggacatgat
     1021 ggaccgcgcc actgcgctgc aggccgtggg cgacgcgcgg gcgcgcacgc tggagaaggc
     1081 cgccgccacc tcgatcgttg ccgacctgtt gaagcgtcag gcagcccagg cccaagccca
     1141 gcagcagaag gccgcggagg acgcgcgccg ggctcacgac gccgcccagg ccgaggccga
     1201 ccgggcccag gccgccacga cccagatcca gacccagcag cacgcgatgg tcatccagct
     1261 cgcgaagctg cgcaagacct cggtgacgct ggagaagcag cggcaggacg gccttgccgc
     1321 cgcggcagcg gcccgcgccg ccgcgctcga agctgcccgc caggctcgac tcgccgcggc
     1381 ccgggcgcag gccgctcgag acgcggccgc tcgcgccgcc gcgcaacaag ccgccgctcg
     1441 ggccgcggcc caggcggcct cgcagcaggc cgctgcggcg gccgcccagg ctgcctcgga
     1501 cgctctcgcc cggcagaccc ggcccagccc gccgccggtg tacagcccgc ccccgccgcc
     1561 cccgtctcag aacggcggag tgtccgcggt gctcaactac gcctacgccc agctcggcaa
     1621 gccctacgtg tggggtgcct cggggccgga cgccttcgac tgctcgggcc tgacccagat
     1681 ggcgtgggcc caggccggtg tgaacctcta ccactacacc ggcgcgcagt gggaccagac
     1741 ctctcgagtg gccctcagcg atcttcagcc cggcgacctg gtcttcttcg gcacggatgg
     1801 cccgagcagt gagcacgtgg gcatcttcat cggcaacggc cagatgatcg acgccccgca
     1861 cagtggtgca accgtgcgaa tcgagagcat gtactgggac aacctgctgc cctacggtgg
     1921 gcgtccctga ggtcagccac gacccacggt ccgtcaacag cgcaggcccc ctcgtgacat
     1981 cgcgtccgag ggggcctgag tcggtggagt gggtccgcgc ccaaggcgcg cagcctcagc
     2041 tggaggacgt gccggagtcg tccatcggct cggcgtgcac agccggcata cgccagcggg
     2101 cagtggtcat gcccgcgcgc ttggcgcgct cgatggcctc tcgcaccgcc tgctcggcct
     2161 cctcgcggcc ggcccagtgg gcgccttcga cggacttgcc gggctcgagg tccttgtagg
     2221 tctcgaagaa gtgctggatc tccaggcggt cgaactcact cacctggtcc agctcggtca
     2281 ggtgcgcctg gcgggggtcg ctggccggaa cgcacaggat cttgtcgtcg ccaccggcct
     2341 cgtccctcat gtggaacagg ccgatcgggc gcacccgcac caggcagccg gggaacgtcg
     2401 gctcctcgag cagaaccagc gcgtccaacg ggtcgccgtc ctcgccgagg ctgtcctcga
     2461 cgtacccgta gtcggccgga tagcgggtag aggtgaacag caggcggtcg aggcggatgc
     2521 gaccagtctc gtggtcgacc tcgtacttgt tgcgatgccc cttggggatc tcgatggtga
     2581 cgtcgaactc cacgacgttg ccccttccgt tctgcacagt ggtgatgacc taggctcgcc
     2641 gccaagtgtt ccgcatgccg caagtcctgt gccgaggggg tcgaatgcgt cgcttcctgg
     2701 ccgcgctgct ggttctcggg atccttgccg ccgcgtacgc gacgctcgac ctcttcgacg
     2761 tcgtccccgg agtactgacg cgcagcgcgc ccccggtgag accgtcgccg tcggctgttc
     2821 gccgtcccgt tgttcctgcc gtccccatcc cgaccatcga cgccggcgcg cagccgctgc
     2881 agggcgtctc ggcatccgcg ccgatccccg tcgccgcagc gctgaagtcg accctcggcg
     2941 cggcgctggt cgacccggcg ttgggccccc atccggggtt cgtcgtccgc gacgccttca
     3001 ccggacagga cctcctggtc caggacgccg atcggccccg ggtcgcggcc tcgaccggaa
     3061 agctgctcgc agccctggcg gtcgtgtcct ccctcgaccc acacgcgacg atgccgacga
     3121 ccgtcgtcca gggtgcctcc cccgcggaga tcgtgctggt cgccgggggc gacacgatgc
     3181 tggccgccgg cgcaggtgac cccacggtcg tcgagggtca tgcggggctc gccgacctgg
     3241 ccagccaggt ggccacggcg ctgcgggcca gtggggccac cgcggtcaag ctccgcctcg
     3301 acaccacgta tgccgcgggc ccgcggtggg cgccgggctg gccgaacgcc gacgtcacgt
     3361 cggggtatac gggcggtgtc tccatgctgg ggctcgccgg ccagcgagcc acccctggca
     3421 agccggcccc tcgcgatccc gaggctgccg ttgcgggtgc cttcgtcgcc gacctgaaag
     3481 ccgtcggggt cacggcgacc gtggagcctg aggcgagctg gtcgaccccg accgtgtcga
     3541 ccgcaccggt cctggggacc gttcggtccg cgccgatcgg ggaggtgctc gccctagccc
     3601 tcgacgacag cgacaacgcc ctgacggagg gtctggccag gcaggccgcc gtcaaggccg
     3661 gttacccggc gaccttccca ggagcggtgg ccttcgtcgc gaagcaggtg gcggcacagg
     3721 gggtcgacct caccggcgtc acgctcaagg acaccagtgg gctcaccgcg gggcaggcca
     3781 tcccaccccg cgtcctggcc gacgtcctgc agctcggcac cgacggctcg gacgctgccc
     3841 ttcaggacgc cgtcgcgcga ctcccggtcg ccgggctgag cgggacgctc catgaccgtt
     3901 tcctggccaa gtccactcac gccgtggcgg gcatcgcccg agccaagacc ggaacgctga
     3961 ccggggccag cgcgatggct ggcacggtgg tcgatgccga cggccggctg ttgtcctacg
     4021 ttgtcgtcgc ggacggaatt cccgccgggg ccggaacgct gaacgcccgg gcggcgttgg
     4081 accgcttcgt ggcggcactc gcgacctgcg ggtgccgttg acctaccgtg aggtgatgac
     4141 cgtgtccgac gtaccgccga ccaaggcgcc cagcgcccgc tacgtcgact gggagttcgc
     4201 caagagcgct ggggcccgcc tggccccacc aggtcccaag gtcacgcccc tggaggccgc
     4261 ccaggtggtc gccgaggtcc gagccgctgc cctgcgggcc cagcagcccg tggccgagac
     4321 cgcccggctg cacgccccag gggatgcgcc cggaccgctc gtcgtcgacc ggcccacctg
     4381 gatcgcgctg aacgccgact cgatgtccgc gctgatggac ccggtgttcg gcaagctggt
     4441 cggggtcaag gcgccgtccg aggcgatgaa ggccgtcggt ggcaaggtca ccggcgcgga
     4501 ggcaggggcc ctgctggcgt tcatgtcggg caaagtgctg ggccagtacg acctcgcacc
     4561 gggtgggaca cctcgcctga tgctggtggc gcccaacctt gtacaggtcg aacgcgagct
     4621 cggggtcgac ccgggggact tccgcttgtg ggtgtgcatg cacgaggaga cccaccgcgt
     4681 gcagttcacg gccgtgccct ggctccgcga ccacatggtc catcggatcc gcaccctcgc
     4741 cggcgatctc gtgcccgacc ccgagtccct acaagagacc ctgagccgtc tgggccacca
     4801 gctcccggag gctctcaaga gcggcggcgc cggtctggcc gacctcatcg ccagccccga
     4861 gcagcgcgcc gagctggcca aggtcactgc ggtgatggcg cttctcgagg ggcatgctga
     4921 cgtcgtcatg gacgaggtcg gcccgaaggt catcccgtcg gtcgcccaga tccggggccg
     4981 cttcaacgag cggcgcaagg gcgtcggtac cttcgaccgg ctgctgcgtc gcctgctcgg
     5041 gctcgaggcg aagatgcgcc agtaccgcga cggtgccgtg ttcgtccgcg aggtcaccga
     5101 ggcggtcggc gtcgacgggt tcaacgcggt gtggtcttcc cccgacacgt tgccgctgcc
     5161 ggcggagatc gagaagccgt cggcctgggt cgcccgcgtc cacggatgac ctcgtgagcc
     5221 cctcgtgagg cctgcgtgag cgggcccgac ccggccacag ccgccatccg ccttgccgtc
     5281 cgcgcggtct tggcggagtg cctgaccggt gagctcgtcc tggtggcctg cagcggaggg
     5341 gccgacagcc tggccctggc tgccgcgacg gcgttcgagg cgcgtcacct aggcctgcgc
     5401 gccggggctg tcgtcgtcga ccacgggctg caggacgggt cagcaatggt ggcgcaggcc
     5461 gccggggata cctgccgtgg cgtgggcctg gaccccgttg tcgtggtgcg caccgacgtg
     5521 ccgcgggtgt caggtgggcc cgaggcggcg gcgcgtgagg ccaggtatgc cgcgctgtcg
     5581 gcagccgcag acgaccaccg agcgcggctg gtgctgcttg ggcacacccg cgacgaccag
     5641 gccgagcagg tgttgctggg tctggccagg ggcgccggcg cccggtccct cgccggtatg
     5701 ccgcgtgccc gcgaccgttt ccggcgcccc ttgctcggga tcgcccgcca gcagacccgc
     5761 gcctcctgca cgcacctgga actgcggtgg tgggaggacc ccatgaacgc ggatccggcg
     5821 tatgccaggg tgcgcgcgcg ccgggccctg ctggacctcg aacgcgatct gggtccggga
     5881 gtgagcgcgg ccctggcccg ctcggctgac cagctccgcg aggatgccga ccacctcgac
     5941 tccctctcgc ggcaggccgt tgccgctctc ggacccgggc cctgggaggt cggacagctc
     6001 gccgcgctgc ctcgcgcggt ccgaacccgg gtctggcgcc tgttgaccgt ggcagccggc
     6061 gccccagccg ggcaggtgag cacgcggcat accgaggcct gtgacgcgct gctcaccggc
     6121 tggcacggtc aggggccggt gagcctgccc ggccccctgc tcgcccgccg cgctggtggc
     6181 cgggtatcca tcggagcgcc cgacccggtt gaatagcccc gcacctgtac gcatctgtac
     6241 gcacgccccg cacccctcga accgacgtct caggagtact gccgtggacg ctgcccatat
     6301 gggagccgat ctggagaagg tcctcatcac cgaggaggag atccacgccc ggctcgagga
     6361 gctggctgcc gaggtgtggg cggagtacga aggcaaggac cttctgctgg tgggtgtcct
     6421 caagggcgcc gtgatggtca tggccgacct gtcccgggcg cttcccggca cagccccggt
     6481 ggactggatg gcggtctcgt cctatggctc gggcaccaag tcctcgggcg tggtgcgcat
     6541 cctcaaggac ctcgacaccg acatcaccgg caagcacgtc ctgatcgtcg aggacatcgt
     6601 ggactcgggg ctgaccctgt cctggatccg ctcgaacctc gagtcgcgca gccccgcctc
     6661 ggtcgagatc tgcaccttgt tgcgcaaacc ggacgctgcg aaggtccaga tcgacgtccg
     6721 atgggtgggg ttcgacatcc cgaacgagtt cgtcgtgggc tatgggctgg actacgcaga
     6781 gaagtaccgc aacctgcggg tcgtcggcac actggcccca cacgtctacg cctgagccga
     6841 caactccctg ccagacggaa caccacgtcc gcccaggtcg ttgtccagca cgaacggcgt
     6901 cgccaccgcc gtagtaccgt cgtggcatcg ccgcgcccag gccgggcagc ggcgcagaag
     6961 ctgatcgagc aggaggcacg gggcgcccag ccccgctaca cacatggatt tcaagcgcat
     7021 ccttcgggcc cccctgttct gggtcg
//
LOCUS       DASYFY010000015         3933 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_473572, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000015 DASYFY010000000
VERSION     DASYFY010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3933
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473572"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VGN19_00280"
     CDS             <1..212
                     /locus_tag="VGN19_00280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194350.1"
                     /translation="QGMGRHENSFGVGPGARLRPGMKKARHDGDGPAARGFVQSVSGR
                     GYPNLVVPIIPTITLSHKGIGVIGR"
     gene            245..658
                     /locus_tag="VGN19_00285"
     CDS             245..658
                     /locus_tag="VGN19_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194351.1"
                     /translation="MSAEPVLPRVSGRHRNHALAAARQARAVQLAADGLSYQAIAEEL
                     GYSNKGTVHRLVGNALAKTRTEAVETMQRLEGERLDALQCGLWDKAMAGDVAAGLTVL
                     RIVATRCRLFGLYAVGAEKDVRGPVAVVVPPEARD"
     gene            868..1071
                     /locus_tag="VGN19_00290"
                     /pseudo
     CDS             868..1071
                     /locus_tag="VGN19_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013160159.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1081..2547)
                     /locus_tag="VGN19_00295"
     CDS             complement(1081..2547)
                     /locus_tag="VGN19_00295"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEV7194352.1"
                     /translation="MSALRRMVRQVALHEPTGTTLARGSALSTAGLLAQGVLRFATAF
                     LVGHIASRAELGLVASAVATATILALLWPTTAGSAASKFLARARGAAQHDEVLSTAAH
                     LRTRTAQTAVVLSFASLPVWVFVDHGSWAGALSVGALTLAYSGYNFTRGVQFGAGQVA
                     RATAWDLTSVVLGLGSLVALLVAHVRGPALVLPLVLAYGIYTAAGWPWSVKGRPSRER
                     RRELDLFVALGAAGSIASTGFLQLSQITARLVAGNDGAGQYAAALNLATPASMLAASL
                     SLVLFPSMAEAWGRGDHTAFHAQTDRAMRAIGVVMVAIFGSIILASRLMIQVIWGAKF
                     VGAENLLPVLILAVLATNLGVASVNAITTRSQRGMWITTGASLLGLVVGVLVWLALTG
                     DLGIQGVALGYLCGTIVIAAIPVVIVWRTSGHHWAGLFVRIGLGLLVIGALVLLQRRA
                     GLSPWLDPALVLVFLVGWLALNRSDVLALPIPRPGRRS"
     gene            complement(2544..3539)
                     /locus_tag="VGN19_00300"
     CDS             complement(2544..3539)
                     /locus_tag="VGN19_00300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194353.1"
                     /translation="MSDTALPPSALHVNDAAFTAARMLGEARSRGLQWDLLPIIPPAQ
                     DWSGPVGTSRKAVLGARWLAGLARAARRHDIVHVHSATTLRHTRPVVRRYVLHCHGSD
                     VRSAQHQPTHRASIRAGLTEAEAVFYSTPDLAEQILPHRTDAHYLPVPVAVDEVPVWS
                     PSGGRPSVVFASRWSPDKDSTRQLAVARALVRALDERADVVGLDWGPQSADAAAVGVR
                     LVPRCDHAAYLRLLAGAHVVVGQSAGILAASELEALATGAPLVIPVPLPLYDRTDVPV
                     TGADGPDGAVAEVRTLLDDPGDPTIRREWVREHHGVVRAVDTLTAVYADVMARRR"
     gene            complement(3536..>3933)
                     /locus_tag="VGN19_00305"
     CDS             complement(3536..>3933)
                     /locus_tag="VGN19_00305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194354.1"
                     /translation="DSGAITFHDPVAPADLPRTLNRFDVGAFCMPPININAEYALPNK
                     FFDFVQARLAHAVGPAPEMARLVREYGLGVVSQDFSAESFTAALRTLDADAIQAGKEA
                     SHRHARDLSSTSDVATIDAIVTRLLPGAA"
BASE COUNT          644 a         1267 c         1489 g          533 t
ORIGIN      
        1 ttcagggcat gggtcgtcac gagaactcct tcggggtggg gcccggtgcg cggctgcgtc
       61 cgggcatgaa gaaggcccgt cacgacggtg acgggcctgc agcgaggggg tttgtccagt
      121 ccgtgagtgg acgtggttat cccaacctcg tggtaccaat tataccaacg attaccttgt
      181 cccataaggg aattggcgtg attggtcgtt gatgtagcgt caacgtttcg cgataatggt
      241 tggcatgagt gccgaacctg tcctgccgcg agtcagcgga cgacaccgaa accacgctct
      301 tgccgcggcg cggcaggcgc gggccgtgca gctcgcggcc gatggactga gctaccaggc
      361 gatcgccgaa gagctgggct acagcaacaa ggggacagtg caccggctcg tcgggaacgc
      421 cctggccaag acgcgaaccg aggctgtgga aaccatgcag cggctggagg gtgagcgact
      481 tgatgccctc cagtgcgggc tctgggacaa ggcgatggcc ggggacgtcg cggcgggctt
      541 gaccgttctt cgtattgtcg ccaccaggtg tcggctcttc gggctgtacg ccgtcggcgc
      601 cgagaaggat gtgagaggac cagtcgcggt agttgtgccg cctgaggcgc gagactgact
      661 atcgagagtt gcctgccgag cgttgccttt gaccgaagcc atctcgaagg gataggacgc
      721 aagccggcac cgatgccagt gggcctcggc aggccttcac gtggtaggtc aaggcgtgca
      781 gccggcccgt gagggacgcc ctggtcaaga cgcgaatcga agccgtggag acgttgcagc
      841 agctggaggg tgaccggctt gatggccggc cgggccctga agtcgcgcgc cgaggacagc
      901 ccggcgtact tcgaccggcc cggcaccatc aacggaccga ccgaggccat caacggccga
      961 ctcgagcacc tctgcggctc ggccttgggc ttccgcaacc tcaccgacta catcgccaga
     1021 tccttgctcg aggcaggagg tctcagaccg ctgctacacc gtcgtctgtg aagagccggc
     1081 tcaggaccgt cgcccgggtc gggggatcgg cagcgcgagg acgtcggagc ggttgagcgc
     1141 cagccagccg acgaggaaga cgaggaccag ggccgggtcg agccatgggg acaggccagc
     1201 cctgcgctgt agcagcacta gggcgccgat gaccagcagc cccaagccga tccgcacgaa
     1261 cagcccagcc cagtggtggc cggaggtgcg ccacacgatg acgacgggga tggccgcgat
     1321 gacgatggtg ccgcacaggt agcccaaggc cacgccctgg atgccgaggt cgccggtgag
     1381 agccagccag acgagcacac cgacgaccag ccccagcagg ctggctcctg tggtgatcca
     1441 catgccgcgc tgggagcggg tcgtgatggc gttgacgctc gccaccccca ggttggtcgc
     1501 gaggaccgcg aggatgagca ccggcaggag gttctccgcc ccgacgaact ttgctcccca
     1561 gatcacctgg atcatcagtc ggctggcgag gatgatcgag ccgaagatcg cgaccattac
     1621 gaccccgatg gcacgcatcg cccggtcggt ctgggcatgg aaggcggtgt ggtcgccgcg
     1681 tccccaggcc tcggccatcg acgggaacag caccaggctc agcgacgccg ccagcatcga
     1741 cgccggggtc gcgaggttga gcgccgctgc gtactggcct gcgccgtcgt tgccggccac
     1801 gagcctcgcg gtgatctgcg agagctggag gaacccggtg ctcgcgatgg accccgctgc
     1861 gccgagcgcc acgaagaggt cgagctcgcg ccgtcgctcg cgggagggac gacccttgac
     1921 ggaccagggc cagccagcgg ccgtgtagat gccgtaggcg aggacgagcg gcaggaccag
     1981 cgctgggcca cggacgtggg cgaccagcag ggcgaccagt gagccgaggc cgagcaccac
     2041 gctggtgagg tcccaggcgg tggcccgggc cacctgtccg gcaccgaact gcacacctcg
     2101 ggtgaagttg tagccggagt aggccagggt cagggcaccc acactcaggg ccccggccca
     2161 ggagccgtgg tcgacgaaga cccatacggg caggctggcg aaggacagca cgacggcggt
     2221 ctgggcggtg cgggtgcgca ggtgggctgc ggtgctcagg acctcgtcgt gctgggcggc
     2281 gccccgagcc cgcgcgagga acttcgaggc ggcgctgccg gccgtagtcg gccagaggag
     2341 cgcgaggatg gtggccgtgg cgacggccga cgccaccagt ccgagctcgg cccggctggc
     2401 gatgtgcccg accaggaacg cggtagcgaa ccgcaggacg ccttgagcca ggagcccagc
     2461 ggtgctgagg gcgctgcccc gggcgagagt ggtgccggtc ggttcgtgga gggcgacctg
     2521 ccgcaccatt cgccgcagcg cgctcaccgg cggcgcgcca tcacgtcggc gtagaccgca
     2581 gtcagggtgt cgacagcacg gacgacccca tggtgctccc gaacccactc gcggcggatg
     2641 gtcgggtcac cggggtcatc gagcagggtt cgaacctcgg cgacggcgcc atcggggccg
     2701 tccgcaccgg tcacgggaac atctgtcctg tcgtacagcg ggagcggcac cgggatcacc
     2761 agcggtgcgc ccgtggccag ggcctcgagc tcgctcgccg cgaggatccc cgcgctctga
     2821 cccaccacga cgtgggcccc ggctagcagc cgcaggtagg ccgcgtggtc gcagcgggga
     2881 acgagccgca cccccacggc agcggcatcc gcagactgcg gaccccagtc caggcccacg
     2941 acgtcggcac gttcgtccag cgcccgaacg agcgcccggg ctaccgccag ctggcgggtg
     3001 ctgtccttgt ccgggctcca ccgcgaggcg aagaccacgg atggtcgacc gccggacggc
     3061 gaccagaccg ggacctcgtc gacggcgacg gggacgggga ggtagtgcgc gtcggtccgg
     3121 tggggcagga tctgctcggc gaggtcgggg gtcgagtaga acaccgcctc cgcctcggtc
     3181 aggcccgccc ggatcgaggc gcggtgggta ggttggtgct gcgcgctccg gacgtcggat
     3241 ccgtggcagt gcagcacgta gcggcgcacg accgggcggg tgtgccgcag cgtcgtggcg
     3301 gagtgcacgt ggacgatgtc gtggcgccgc gccgcgcggg ccaggccggc gagccatcgg
     3361 gcgccgagga cggccttccg cgaggtgccg accggcccgc tccagtcctg ggcgggtggg
     3421 atgatgggca gcaggtccca ctgcagaccc cgcgagcgtg cctcgccgag cattcgggcg
     3481 gcggtgaacg cggcgtcgtt gacgtgcagc gcggacggcg gcagagccgt gtcgctcacg
     3541 ccgcgcccgg tagcagccgc gtgacgatgg cgtcgatggt ggctacgtcg gaggtgctgc
     3601 tgaggtcgcg ggcgtgtcgg tgcgaggcct ccttgccagc ctggatggcg tcagcgtcga
     3661 gggtgcgcag ggccgcggtg aacgactcgg cgctgaagtc ctgtgacacg acgccgagac
     3721 cgtactcgcg caccaaccga gccatctcgg gggccgggcc gacggcgtgg gcgaggcggg
     3781 cctggacgaa gtcgaagaac ttgttgggca aggcgtactc cgcgttgatg ttgatcggcg
     3841 gcatgcagaa cgccccgacg tcgaaccggt tgagggtccg cgggaggtcg gccggggcaa
     3901 cggggtcgtg gaaggtgatg gcccccgagt cgc
//
LOCUS       DASYFY010000016         3424 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_789013, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000016 DASYFY010000000
VERSION     DASYFY010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3424
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_789013"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2672
                     /gene="rpoC"
                     /locus_tag="VGN19_00310"
     CDS             <1..2672
                     /gene="rpoC"
                     /locus_tag="VGN19_00310"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEV7194355.1"
                     /translation="SDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKA
                     MALELFKPFVMKRLVDLNHAQNIKSAKRMVERSRSVVWDVLEEVITEHPVLLNRAPTL
                     HRLGIQAFEPQLIEGKAVQIHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSS
                     NNILSPADGRPVTSPTQDMVLGINFLTSERFDNPGDGRAFSSMAEAIMAFDAHEINLQ
                     SHITMRYVDMLPPLGWEAPEGFVPGDPLVIETTLGRALFNEALPMDYPLVNREVDKRV
                     LGGIVNDLAERYPKVQVAATLDALKEAGFRWATRSGVTISIEDVVTPPKKAELLAEAE
                     ARAEKVQTQFERGLITDLERRQELIEIWTRATDEVADAMREHFPRTNPVFMMVNSGAR
                     GNWMQVRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFIATHGARKGLADTALR
                     TADSGYLTRRLVDVSQDVIIREVDCGTDRGLAMQIGEAASDGSVRRIENVETAVVSRV
                     LSEDVVVESATLATAGTELGIQTVDSLVRAGVSSIKVRSVLTCESKVGTCATCYGRSL
                     ATGLLVDVGEAIGIVAAQSIGEPGTQLTMRTFHTGGVAGEDITHGLPRVVELFEARTP
                     KGVAPISESAGRVTIDDTDKVRKIIVTPDDGTEEMAYSVSKRSRLLVTDGGRVAVGDK
                     LIQGAVDPKQVLRILGQRAVQLHLVAEVQEVYRSQGVSLHDKHIETIVRQMLKRVTII
                     EGGDTEYLPGELVERGLFESENRRVVAEGKIPASARPELMGITKASLATESWLSAASF
                     QETTRVLTDAAIHAKSDPLLGLKENVILSKLIPAGTGMPQYRNVKVEPTEEAKAAMYA
                     SLSAYDDLDYGSFSSGGGQAVALEEYDFGGYTG"
     gene            2733..3215
                     /locus_tag="VGN19_00315"
     CDS             2733..3215
                     /locus_tag="VGN19_00315"
                     /inference="COORDINATES: protein motif:HMM:NF025198.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HEV7194356.1"
                     /translation="MSDPTQPAPPDPDQPGSTPPGSYPPSAYPPAVPGQAGYGTPAPY
                     GQNQYGQSQYPQNQYSQSPYAPAAAPVQSNDAVVALVLSIASWLFCPVVLAVVALVFA
                     SKAKRAIAASNGWVTGDQMATAAKVISWINIGLWLAIAVVFVVVFIVLAAASTSSSYG
                     "
BASE COUNT          544 a         1182 c         1157 g          541 t
ORIGIN      
        1 tctcggacat gctcaagggc aagcagggcc ggttccgcca gaacctgctc ggcaagcggg
       61 tcgactactc cggccgctcg gtcatcgtcg tcggcccgca gctcaagctg caccagtgcg
      121 ggttgccgaa ggcgatggcg ctcgagctgt tcaagccgtt cgtcatgaag cggctcgtcg
      181 atctcaacca cgcccagaac atcaagtccg ccaagcgcat ggtcgagcgt tcgcgctcgg
      241 tcgtgtggga cgtgctggaa gaggtcatca ccgagcaccc ggtgctgctc aaccgggcac
      301 cgacgctgca ccggctcggc atccaggcct tcgagccaca gctgatcgag ggcaaggccg
      361 tccagatcca cccgctggtg tgcaccgcgt tcaacgcgga cttcgacggc gaccagatgg
      421 cggtgcacct gccgctgtcc gccgaggcgc aggccgaggc ccgcatcctg atgctgtcga
      481 gcaacaacat cctgtcgccg gcggacggcc gtccggtcac ctcgccgacc caggacatgg
      541 tgctcgggat caacttcttg acctccgagc ggttcgacaa ccccggtgac gggcgcgcgt
      601 tctcctcgat ggccgaggcg atcatggcgt tcgacgcgca cgagatcaac ctgcagtccc
      661 acatcaccat gcgctacgtc gacatgctcc cgccgctggg ctgggaggcc cctgagggct
      721 tcgtccccgg cgacccgctg gtgatcgaga ccaccttggg ccgcgccttg ttcaacgagg
      781 cgctgccgat ggactacccg ctggtcaacc gcgaggtcga caagcgcgtc ctcggcggga
      841 tcgtcaacga cctcgccgag cgctacccga aggtgcaggt ggcggccacc ctcgatgctc
      901 tcaaggaggc aggtttccgc tgggccaccc ggtccggtgt gaccatctcc atcgaggacg
      961 tcgtcacccc gccgaagaag gccgagctgc tcgccgaggc ggaggcgcgg gccgagaagg
     1021 tgcagaccca gttcgagcgg ggcctgatca ccgacctcga gcgtcgccag gagctcatcg
     1081 agatctggac ccgtgccacc gacgaggttg ccgacgcgat gcgcgagcac ttcccgcgca
     1141 ccaacccggt gttcatgatg gtcaactccg gtgcccgtgg taactggatg caggtccgtc
     1201 agatcgccgg catgcgtggg ctggtcgcca accccaaggg cgagatcatc ccgcggccga
     1261 tcaagtcgaa cttccgcgag ggcctgtcgg tcctggagta cttcatcgcc acccacggtg
     1321 cccgcaaggg tctcgcggac acggcgcttc gtaccgcaga ctccggttac ctgacccgcc
     1381 gactggtcga cgtcagccag gacgtgatca tccgagaggt cgactgcggc accgaccgtg
     1441 gcctggccat gcagatcggc gaggcggcct cggacggctc ggtgcggcgc atagagaacg
     1501 tcgagaccgc ggtcgtgtcc cgggtgctgt ccgaggacgt ggtcgtggag tccgcgacgc
     1561 tcgccacggc cgggaccgag ctgggcatcc agacggtcga ctccctcgtg agggccggtg
     1621 tcagctcgat caaggtgcgc tcggtcctga cttgcgagag caaggtcggc acgtgtgcca
     1681 cctgctacgg ccgctcgttg gccaccggcc tgctggtcga cgtcggtgag gcgatcggca
     1741 tcgtcgcggc gcagtcgatc ggcgagcccg ggacccagct gaccatgcgc acgttccaca
     1801 ccggcggtgt cgccggcgag gacatcacgc acggcctgcc ccgagtggtc gagctgttcg
     1861 aggcgcgaac ccccaaggga gtcgccccga tcagcgagtc cgccggacgg gtcacgatcg
     1921 acgacacgga caaggtccgc aagatcatcg tgacacccga cgacggcacc gaggagatgg
     1981 cctactcggt ctccaagcgc agtcggctgc tggtcaccga cggggggcgc gtggccgtcg
     2041 gcgacaagct gatccagggt gccgtggacc ccaagcaggt gctgcggatc ctcggacagc
     2101 gggcggtcca gctgcacctg gtcgcggagg tccaggaggt ctaccgcagt cagggtgtgt
     2161 ccttgcacga caagcacatc gagaccatcg tgcgtcagat gctcaagcgc gtcacgatca
     2221 tcgagggcgg cgacaccgag tacctgcccg gagagctggt cgagcgcgga ctgttcgagt
     2281 ccgagaaccg ccgggtcgtc gcggagggca agatccccgc gtcggcgcga ccggagctca
     2341 tgggcatcac gaaggcctcg ctggcgacgg agtcgtggct gtccgcagcc tcgttccagg
     2401 agaccacccg cgtgctcacc gatgcggcga tccacgccaa gtcggacccg ctgctgggtc
     2461 tgaaggagaa cgtcatcctg agcaagctga tcccggccgg gaccggcatg ccgcagtacc
     2521 gcaacgtcaa ggtcgagccg accgaggagg cgaaggcggc gatgtacgca tcgctgtccg
     2581 cgtacgacga cctcgactac ggctcgttca gcagcggcgg cggccaggcc gtggccctgg
     2641 aggagtacga cttcggcggc tataccgggt gaaaggcgat ctgaagggcg tgcttgctgt
     2701 tggcgggcac gcccttcggc catgatgtgg cgatgagcga cccgacccag cccgcgccgc
     2761 cggaccccga ccagcccggc agcacgccgc ccggctcgta ccctcccagc gcctacccgc
     2821 cggcggtgcc aggtcaggcg ggttatggga cgccggcgcc gtacggccag aaccagtacg
     2881 gccagtcgca gtacccccag aaccagtaca gccagtcgcc gtacgccccg gctgccgctc
     2941 ccgtccagtc caacgacgcg gtcgtggccc tggtgctctc gatcgcgtcg tggctgttct
     3001 gccccgtcgt gctggccgtc gtggcgctgg tcttcgcgtc caaggccaag cgcgccatcg
     3061 cggcctcgaa cggctgggtc accggtgacc agatggcgac cgcggccaag gtgatctcct
     3121 ggatcaacat cgggctgtgg ctggcgatcg cggtcgtgtt cgtcgtggtc ttcatcgtgc
     3181 tcgccgcggc gagcacgtcg agctcgtacg gatgacccgc aggcgcttgt tctaggcccg
     3241 cccggcgctg ccctcctgct cgttttgacc tgaccggcct ggtctcggta gtctttccca
     3301 ctgtgcctgg gtagccccgg gctgccgcgt gagcgggtgc tgctttccag cgcctcctca
     3361 ggtgtgcctc tcctccagtt tcggagtgtc gggcccgggc ctccgggcgg gccgcgacac
     3421 gccc
//
LOCUS       DASYFY010000017         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1524924, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000017 DASYFY010000000
VERSION     DASYFY010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1524924"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1025)
                     /locus_tag="VGN19_00320"
     CDS             complement(<1..1025)
                     /locus_tag="VGN19_00320"
                     /inference="COORDINATES: protein motif:HMM:NF022114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gmad2 immunoglobulin-like domain-containing
                     protein"
                     /protein_id="HEV7194357.1"
                     /translation="MNDRPEFLHPDYEPGEFDGVERQLRQALTMQAQRIHPHDRLANV
                     LRVAHEEGPTSEGTRQRRWLVPVAAAATVALIAGGAWAATHGDDNQLVPTPPASSGPP
                     TTGGATTPAPSATRTSPTQPPVAGASSLPVYFVGPVAPGKRTYKLFREFLRDGVSSAA
                     SPAERAKASLVLAINAQAYSGTDGYLQPWAGQTIGEVTVTPQRISIALANAGMKGLDP
                     ETQRLAVQELVWTAQAAVGKGTIPVRFSIADGSTALFGRLPISQTYNRPGTNNLSTDL
                     APLWVTSPGRGAVLATSKPVVVQGEAIVFEASIGWQLRSGQTVVRSGTTLASIGAPAQ
                     GSYSVNLG"
     gene            complement(1022..1639)
                     /locus_tag="VGN19_00325"
     CDS             complement(1022..1639)
                     /locus_tag="VGN19_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigE family RNA polymerase sigma factor"
                     /protein_id="HEV7194358.1"
                     /translation="MADRNRPGGAGMGADQGADELGDARGADRAVADTAVAELYAAHW
                     SGLVRLAWLLLHDDQAAEEVVQDAFIAVHRHWESLRNPDSAAAYLRRAVVNGARSDLR
                     HRGVQERYLARQRGEAAGHGGARGGARAEVSAEERALDVEATQSMIVALGRLPQRQRE
                     VLTMRYYLDLSEGEIADALGISAGSVKAHAHRGLASLRDRVDARS"
     gene            1709..2080
                     /locus_tag="VGN19_00330"
     CDS             1709..2080
                     /locus_tag="VGN19_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010551692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEV7194359.1"
                     /translation="MPSAVSVPTDPDCLFCRIVSGDLPATVVREDEHTVAFRDLEPQA
                     PTHVLVIPRRHVPNLAALAEQAPLEVAAVVQAVAAVAREEGVDQGGYRTVFNTGADAH
                     QTVFHAHVHVLGGRTMTWPPG"
     gene            2105..>2620
                     /locus_tag="VGN19_00335"
     CDS             2105..>2620
                     /locus_tag="VGN19_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEV7194360.1"
                     /translation="MPDADHQPSLDGAPDGARPAPTHTVVIPPQVQMVTLLGPRDELL
                     RTMERAFPQLEIHVRGNEFHLSGPSAEVALAERTLDELLLVIEGGQPLNRDAVERSIS
                     MLRAQTAERPADVLTMNIVSSRGRTIRPKTLNQKHYVDAIDKHTVVFGIGPAGTGKTY
                     LAMAKAVAALQA"
BASE COUNT          378 a          962 c          896 g          384 t
ORIGIN      
        1 cccaggttca ccgagtagct gccctgcgcg ggcgccccaa tactggccag ggtggtgccc
       61 gatctcacca ccgtctgacc gctcctcagc tgccacccga tgctggcctc gaacacgatc
      121 gcctcaccct ggacgaccac cggcttgctc gtcgccagca ccgcgccccg ccctggtgag
      181 gtgacccaga gtggggccag gtctgtgctg aggttgttgg tgccgggccg gttgtacgtc
      241 tgcgagatag ggaggcgacc gaacagtgcg gtcgacccat ccgcgatgct gaaccgcacg
      301 gggatggtgc ccttgccgac ggccgcctgg gccgtccaca cgagctcctg aacggcgagc
      361 cgctgggtct ccgggtcgag gcccttcatc ccagcattgg ccaaggcgat gctgatccgc
      421 tgcggcgtca ccgtgacctc accgatggtc tggccagccc acggctggag gtacccgtcg
      481 gtgccgctgt acgcctgggc gttgatcgcg agcaccaggg aggccttggc gcgctcggcc
      541 ggactggccg cggagctcac gccgtcgcgg aggaactcgc ggaaaagctt gtaggtccgc
      601 ttgccggggg caacgggccc cacgaagtac accggcaggc tcgacgcccc ggcgacgggc
      661 ggctgggtgg gtgacgtgcg cgtggctgag ggcgccggcg tggtggcgcc cccggtcgtc
      721 ggcggaccgc tgctggcggg cggcgtcggg accagctggt tgtcgtctcc gtgagtggct
      781 gcccaggcac cgccggcgat gagcgcgacc gtcgcggcgg ccgccacggg gacgagccac
      841 cggcgctgtc gcgtgccttc ggaggtgggt ccctcctcgt gcgccacgcg caggacgttc
      901 gcgagacggt cgtgcgggtg gatgcgctgg gcctgcatgg tcagggcctg ccgcagctgt
      961 cgctccacgc cgtcgaactc gcccggctcg tagtcggggt gcaggaactc gggccggtcg
     1021 ttcatgatcg ggcgtcgact cggtcgcgca ggctggccag cccgcgatgg gcatgcgcct
     1081 tgaccgagcc tgccgagatc ccgagggcat cggcgatctc tccttcgctg aggtcaaggt
     1141 agtagcgcat ggtcagtacc tctctctggc gctgcggcag ccgtccgagc gccacgatca
     1201 tcgactgggt cgcctcgacg tccagggccc tctcctcggc gctgacctcg gcgcgcgcgc
     1261 caccgcgtgc gccaccgtga ccggcggcct ccccgcgctg gcgggccaga tagcgctcct
     1321 gcaccccccg gtgccgaagg tcggaccgtg cgccgttcac gaccgcacgg cgcaggtatg
     1381 ccgcggcgct gtccgggttg cgcagcgact cccagtgccg gtggacggcg atgaaggcgt
     1441 cctggaccac ctcctcggcg gcctggtcgt cgtgcaggag caaccacgca agccgtacca
     1501 gaccgctcca gtgggcggca tacagctcgg cgaccgcggt gtcggccaca gcacgatcgg
     1561 cacccctggc atcaccaagc tcatcggcac cctggtcggc acccatgccc gcgccgcccg
     1621 gacggttccg atcagccaca cccaacggtc tcacgcacca acgacgcgca gcggtccact
     1681 gtggttgacg cgccgatacg ctcagttcat gccatcagcg gtctccgtcc ccaccgaccc
     1741 cgactgcctg ttctgccgca tcgtttcggg cgaccttccc gccacggtgg tgcgcgagga
     1801 cgagcacacc gtcgccttcc gcgatctgga gccgcaggcg cccacgcacg tgctcgtcat
     1861 cccccgacga cacgtcccga acctggcggc actggccgag caggcccccc tcgaggtggc
     1921 cgccgtggtc caggcggtgg cggccgtggc ccgggaggag ggcgtcgacc aagggggcta
     1981 ccgcacggtc ttcaacactg gggccgatgc tcaccagact gtcttccacg cccacgtcca
     2041 cgtgctcggc ggccgaacca tgacgtggcc gcccggctga gcagcaccgt agactgggct
     2101 gaccatgcct gacgccgatc atcagcccag cctggatggc gcgcccgacg gcgccagacc
     2161 agcgcccacc cacaccgtcg tgatcccccc gcaggtgcag atggtcaccc tcctgggacc
     2221 ccgggacgag ctgctgcgga ccatggagcg ggccttcccc cagctggaga tccacgtccg
     2281 gggcaacgag ttccacctgt ccggtccgag cgccgaggtg gccctcgccg agcgcaccct
     2341 cgacgagctg ctgctggtga tcgagggcgg tcaaccgctc aaccgcgacg cggtcgagcg
     2401 ctcgatcagc atgttgcggg cgcagaccgc cgagcggccc gccgacgtcc tgaccatgaa
     2461 catcgtgtcc tcgcgggggc gcacgatcag gcccaagacg ctcaaccaga agcactacgt
     2521 cgacgccatc gacaaacaca ccgtggtctt cgggatcggt ccggccggca ccgggaagac
     2581 atacctggcg atggccaagg cggtcgcggc gctgcaggcc
//
LOCUS       DASYFY010000018         8965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1209809, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000018 DASYFY010000000
VERSION     DASYFY010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8965
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209809"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(379..1434)
                     /locus_tag="VGN19_00340"
     CDS             complement(379..1434)
                     /locus_tag="VGN19_00340"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEV7194361.1"
                     /translation="MKRFVLPVIRVLIVGLTVWIIVGLIRSIDLAQVWDSISLLTWFE
                     ILAVLALLAFVRTLNAVPLTRFIPNFPLPRAVLNDLCANLISTIAPPPSDMVLRFSMF
                     KAWGIDATEGFAGVTLNTLMFYVVRFSAPILGLIVLLVTGELRGGMVWTSGVCALVAV
                     LILTILVSAVRAEHICATIGRTGGRVGRRFRPNAVDPEVWATKMVDFRGLVGDQLRGR
                     WPSASLALLVMVLADAAILVYSCRSVDVPTSAVGPLVIVGGFLVAYPLTALPFAGIGV
                     FDAFLYEFIVARTGTSYQSAIVAGVVVWRTTTLLVPYLTGGVALGTWRHSHPKEDPLT
                     TIEVESEPGPAPAADPA"
     gene            complement(1473..3098)
                     /locus_tag="VGN19_00345"
     CDS             complement(1473..3098)
                     /locus_tag="VGN19_00345"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEV7194362.1"
                     /translation="MSGPNSVSGNAKSARPNILLITTDEERFSIPRPTGYELPGRERL
                     LARGTAFERYYVASAMCSSSRSVMYTGQHVPITQIFDNDNMPYIRPLNPELGTLGTMM
                     RAAGYYCTYQGKWHLSNAYQTRENPRSTVDALEPYGFSEFNDWGDLDGGAWAGLKIDP
                     VIAGQAVKWLRNRAPSVVKEQPWFMAVNFVNPHDIMSFDYGGRRVITPPPNLAEAVVV
                     KPAADIPLYARDWEFNLPASLGDDLSGAAPAVREYAGLAGAMFGPVVDDEAWHRGLSF
                     YLNCIRDVDRSVDLVLDALEASGQADSTIVVFTSDHGEMAGSHGLRQKGNLVYDENFH
                     VPLIICHPDVRGGVTSQALGSAVDLAPTLLDLVGVDTSVTATEFPALHGHSLGPVLHG
                     QAQVREGVLTAVESVLTLDSEFWTAFARPSAPERIKTGELRPDWSKRGFLRGYTDERY
                     SFGRYFSPVAPNRPESLEALVQDNDVVLYDRVDDPTEQRNLATDPAHATVVEEYRGRL
                     EALIDAEIGPDTHAWVPERPLLLGLPTWRGDAA"
     gene            3241..3918
                     /locus_tag="VGN19_00350"
     CDS             3241..3918
                     /locus_tag="VGN19_00350"
                     /inference="COORDINATES: protein motif:HMM:NF044762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7194363.1"
                     /translation="MTSDLSKPTRVERRKARTRQALIEAGQRILAERGTSDVSIQDIT
                     DEADVGFGSFYNHFSTKSELFEEAVGDTLEAHGRMLDQLTMGIDDPAEVFSTSVRLTA
                     MLASTQPEIARVFVASGMSFLVSDRGLAPQALRDIERGIGSGRFTVHNPYVALAAAAG
                     CLLSFLQISLDKPQILDGDAVDELAERLLRMFGMAPRSARAVAHRPLPTVGLPIVPSA
                     VTQHSRR"
     gene            complement(4001..5551)
                     /locus_tag="VGN19_00355"
     CDS             complement(4001..5551)
                     /locus_tag="VGN19_00355"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEV7194364.1"
                     /translation="MTFDHRILRITTALAVSLAVAAPALLVLAVLLDSLPVPVLAIVV
                     MAVIVVLVPALLVARLRAYGQDTWMSRHERTFDGVVLLTFWVAVALCCQLLGGFPAAV
                     YAFYFLLVVLAAVQLAPVAAYGFGALCAVTTAVTAGTSGTLPQNSWSAVAVACVALVV
                     TTVFAVAIVRALRILRDESENARLALGNEVERLSAELTRVAGGDLAPREDTGADVNLV
                     VGPVWSSLDGTLDSVRGVVEAMQSASRMLAQSAAELTATAGQAAAGSTQQAAALTQTT
                     SSMHELASTAAQIAQMAEVVTASADAVTRTGSSAADVVRSTVGQLEQIVERVERISQE
                     AEALGSSTARIDAILEVIHDISDQTNLLALNAAIEAAHAGDQGRGFAVVATEVKALAE
                     RAMQSTGEIQGIVAGIRAGVSSTVAATGEGADAARQGAVLAAEVARALGSMSGVANEA
                     ALAADQIRIATAQQQSASDQIVAAMSEVAAVSAQQANGSRETVRAVGELDRLAGELQR
                     TAAAFTTV"
     gene            5657..6379
                     /gene="trmB"
                     /locus_tag="VGN19_00360"
     CDS             5657..6379
                     /gene="trmB"
                     /locus_tag="VGN19_00360"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEV7194365.1"
                     /translation="MTEPTRTTPSPTSPHSPPSRPRGVRTYHPRRGRLTDDKRNRVAD
                     LLTRFGVPATGELDLAALFPGLPVVLEIGFGMGEATAHMAQADPGTGILAADIHTPGV
                     LRLLTLVEREGISNVRVAHGDALELLAEQVPKASLAGVRVFFPDPWPKARHHKRRLVQ
                     SPAVSLVVSRIEPGGFLHLATDVADYAALMLDVVNSEPLLHNDYQGFAPRPADRPLTR
                     YEARGCDNGRPVADLVLRRLPT"
     gene            complement(6392..7228)
                     /locus_tag="VGN19_00365"
     CDS             complement(6392..7228)
                     /locus_tag="VGN19_00365"
                     /inference="COORDINATES: protein motif:HMM:NF018447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEV7194366.1"
                     /translation="MSASSRSSRHRLPPQRSGGHRVALIGGLAIALAGGGWVAAAHAA
                     DAGATNAVAFVEGSTFDGAVADPQFPVYRTGYSPGSLSISAHVALLADGTRPPTAAQL
                     AQTVRLRAAATARANQIAAAKAKAAAAAKAKAKAKAAAKARAVARARAAAAAARAAQL
                     KAAAKKSPAKKPVAVYRGDITRSPAAMHSSRARAAIPMSVWRASATARHVVRAESGGN
                     CRDVSASGTYRGCWQMTQGLWQGHGGRAFAARPELASCAQQDIVAYRIWVEQGWSPWS
                     TA"
     regulatory      complement(7227..7405)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00379"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-AMP (ydaO/yuaA leader) riboswitch senses
                     the signaling molecule cyclic di-AMP; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="cyclic di-AMP"
                     /db_xref="RFAM:RF00379"
     gene            7679..>8965
                     /locus_tag="VGN19_00370"
     CDS             7679..>8965
                     /locus_tag="VGN19_00370"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase"
                     /protein_id="HEV7194367.1"
                     /translation="MKSTMQHVPLAISRLLNQGSRFHATSTVVTWTGDGTRTLTYAQV
                     GARSAQLAHALRGLGVDADQRVATFMFNNNEHLEAYLAVPSMGAVLHTLNIRLFPEQV
                     SYIATHAEDHVVIVDGALVPVLSKILPDMPTVRHVIVTGGADGTVLKRPGVEVHAYEQ
                     LLAAQPTEFKWPEIDEDDAAALCYTSGTTGNPKGVAYSHRSIWLHSMQVCTAEAFGFG
                     PADKVLAVVPQFHAMSWGLPYAAFMSGASLVMPDRFLQAEPLVRMIEQERPTLAGAVP
                     TIWADLLRYLDDHGGDISSLREVVVGGSAVPPTLMRAFLDRYGLRIVHAWGMTETSPL
                     GSVARPPGGLDEQSEWEYRISQGRLPASVEGRLVGPGGEVLAHDGVSVGELEVRGNWV
                     TGSYLHDPAPEKFDDGWLRTGDVGSLTPDGFLHLTDR"
BASE COUNT         1457 a         3079 c         3038 g         1391 t
ORIGIN      
        1 tcagtgctca aggcgtcggc tgttccgttg tcgagcccca gcctcgacgg ggtcgagtcg
       61 gtcacggtgt ccgcaacccg gtggccgaga cgctgagcgg gtggcgccgg ccccctgcct
      121 ccggagcgag ctcgccgcga agcccgaacc agccgatgaa caagcttccg atgcgtgaga
      181 ccccgctccc gggccgccac gagggaggag ccgaccgtga ccaggccagg ggtaaccagc
      241 cagctcaccg gggccacccg tggccggtcc tgagctcaag gtgccgtgtc aacgccgctc
      301 catcttccga cttgctgttg aactcacagt gactagcgaa agcctcggtg acgctgccaa
      361 cggagcgcat tgcggggctc aggcaggatc ggcagcaggc gccggccctg gctcgctctc
      421 gacttcgatt gtcgtgagcg gatcctcctt ggggtgggag tggcgccagg taccgagggc
      481 cacgccgccc gtcaggtacg gcaccagcag tgtcgtggtc cgccagacca cgacaccggc
      541 cactatcgcg ctctggtagc tcgtgccggt gcgagccacg atgaactcgt agaggaacgc
      601 gtcgaacaca ccgattccgg cgaacggcag ggccgtcagc gggtaggcga cgaggaagcc
      661 gccgacgatc acaagagggc cgacggccga cgtcggcacg tcgaccgagc gacacgagta
      721 gaccaggatg gctgcgtcgg cgaggaccat caccagcagg gcgagcgagg cagagggcca
      781 acggccccgg agctggtcgc cgaccagccc gcggaagtcg accatctttg tcgcccacac
      841 ctccgggtcg accgcgttcg gtcgaaaccg acggccgacg cgtcccccgg tccggccgat
      901 ggtcgcgcag atgtgttcgg ctcggacagc ggacaccaag atcgtgagga tcagcacggc
      961 caccagagcg cagaccccgc tggtccacac catgcccccg cgtagctccc ccgtgacgag
     1021 caggacgatc agacccagga tcggcgccga gaaccggaca acatagaaca tcaacgtgtt
     1081 gagggtgact cccgcgaaac cctcggtggc gtcgatgccc caagccttga acatggagaa
     1141 gcgcagaacc atgtcgcttg gcggtggcgc gatggtggag atgaggttcg cgcacaggtc
     1201 gttgaggacc gcgcggggga gcgggaagtt agggatgaag cgcgtcaggg ggacggcgtt
     1261 cagcgtccgc acgaaggcca gcaaggccaa gaccgccagg atctcgaacc aggtgagcaa
     1321 cgagatcgag tcccacacct gggcgaggtc gatgctgcgg atgagcccca cgatgatcca
     1381 gaccgtgagc ccgacgatca ggacgcggat gaccgggagc acgaagcgtt tcatcatgag
     1441 gcggctcggt cgagatgtgg ggtcggcgag gctcaggccg cgtcgccccg ccacgtcggc
     1501 agcccgagca ggaggggacg ctcggggacc caggcgtgcg tgtcgggtcc gatctctgcg
     1561 tcgatgagcg cctcgaggcg ccctcggtac tcctcgacga ccgtcgcgtg cgccgggtcc
     1621 gtcgccaggt tgcgctgctc ggtagggtcg tcgacgcggt cgtagaggac gacgtcgttg
     1681 tcctgcacta aggcctcgag gctctcaggt cggttgggcg cgactggtga gaagtagcgt
     1741 ccgaaggaat agcgctcgtc ggtgtagccg cgaaggaatc ctcgcttgga ccagtccggg
     1801 cgcagctcgc cggtcttgat ccgctcgggc gcgctcggcc gggcgaaggc ggtccagaac
     1861 tcgctgtcca gggtgagtac cgactcgact gcggtgagga caccctcacg gacctgcgcc
     1921 tgcccgtgga ggacgggacc gagtgagtgt ccgtgcagcg cagggaactc tgtcgcggtg
     1981 accgaggtgt cgacgccgac aaggtcgagc aacgttggcg ctaggtcaac ggccgagccg
     2041 agggcctggc tcgtcacccc tccccggacg tcggggtggc agatgatgag cggcacgtgg
     2101 aagttctcgt cgtagacgag gtttcccttc tgtcgcaggc cgtgcgagcc tgccatctcg
     2161 ccgtggtcgg aggtgaacac gacgatggtg ctgtccgcct gcccggatgc ctcgagcgcg
     2221 tccaggacca agtcgacgct gcggtcgacg tccctgatgc agttcaggta gaagctcagc
     2281 ccgcggtgcc aggcttcgtc gtcgaccacg ggaccgaaca tggctccagc gagaccggcg
     2341 tactcccgca cggcgggcgc ggcacccgag aggtcgtcgc cgaggctggc agggagattg
     2401 aactcccagt cgcgcgcgta gaggggaatg tccgccgcag gcttcacgac gacggcctcg
     2461 gccaggtttg gtggcggggt aatgacgcgg cgcccaccgt agtcgaagct catgatgtcg
     2521 tgcgggttca cgaagttcac ggccatgaac cagggctgct ccttgaccac ggagggggcc
     2581 cggttgcgta gccacttcac ggcttggccg gcgatgacgg ggtcgatctt gagcccggcc
     2641 cacgctccgc cgtcgaggtc gccccagtcg ttgaactccg agaagccata tggttcaagt
     2701 gcgtcgacgg tggatcgagg gttctcacgg gtctggtagg cgttcgagag gtgccacttt
     2761 ccctggtacg tgcagtagta gccagcggcg cgcatcatcg tgcctaacgt gccgagctca
     2821 gggttcagcg gccggatgta cggcatgttg tcgttgtcga agatctgtgt gatcgggacg
     2881 tgctgcccgg tgtacatgac agaccgggac gaactgcaca tcgccgacgc gacgtagtag
     2941 cgctcgaagg ccgtcccacg ggccagcagc cgctcgcgcc ctggcagctc gtagccggtt
     3001 gggcggggga tgctaaagcg ctcctcatcc gtggtgatga ggaggatgtt ggggcgcgcg
     3061 cttttggcgt tgccactgac gctgttcgga ccggacatcg ctgctccctc acgaaggacc
     3121 aagtgatgaa attatcagta gcgacggcct cgtcgtcaag cattcgtccg cactttctga
     3181 tggaagactc agaggtagtg accaggatca gatgtgctcg cacatgggta tgctggcgag
     3241 gtgaccagcg acttgagcaa gccaacgagg gtcgagcgcc gcaaggcccg cactcggcag
     3301 gccctcatcg aggctgggca gcgcatcctc gcagagcgtg gcacgtcgga cgtcagcatc
     3361 caggacatca cggacgaggc cgatgtcggt ttcgggtcgt tctacaacca tttctccacg
     3421 aagtccgagc tcttcgagga ggccgtcggc gacaccctcg aggcccatgg gcgcatgctc
     3481 gaccagctca ccatgggcat tgacgatcct gccgaggtct tctcgaccag cgtgcggctc
     3541 actgcgatgc tcgccagcac ccagccagag atcgcgcggg tcttcgtcgc gtcagggatg
     3601 tcgtttctgg tgtccgaccg agggctggca ccgcaggccc tgcgtgacat cgagcgtggg
     3661 atcgggagcg gccggttcac cgtgcacaac ccgtacgtcg cgctcgcggc ggccgcgggg
     3721 tgcctgctgt ccttcctcca gatcagccta gacaagccgc agatcctcga cggcgacgcc
     3781 gtcgacgaac ttgctgaacg cctgctcagg atgttcggta tggcaccccg ttcagccagg
     3841 gccgtcgccc accgccctct tcccacggtc ggcctcccta tcgtgccatc agccgtcacc
     3901 cagcactcac gtcggtaggc aagtcacgcg cacgtgcctc aaccactgcg ggacaggttc
     3961 cgttcaaacc tgtgagcgag ttcaagaacc cggtcgaggg ctacacggtg gtgaaggcgg
     4021 ctgcggtgcg ctgcagctcg ccggccagcc ggtcgagctc gccgacggcc cgtacggtct
     4081 cccgggagcc gttcgcctgc tgggcggaga ccgcggcgac ctccgacatc gccgccacga
     4141 tctggtccga cgcggactgc tgctgggccg tggcgatgcg gatctggtcg gccgccaggg
     4201 cggcctcgtt cgcgaccccg ctcatcgacc cgagggcccg cgccacctct gcggcgagca
     4261 ccgcgccctg ccgggcggcg tcggcaccct ccccggtcgc cgcgaccgtc gagctgaccc
     4321 cggcccggat tcccgcaacg atgccctgga tctcccccgt ggactgcatg gcccgctccg
     4381 ccagcgcctt gacctccgtg gccaccaccg cgaacccgcg accctggtcg ccggcgtgcg
     4441 cggcctcgat cgccgcgttc agtgccaaca ggttcgtctg gtcactgatg tcatggatga
     4501 cctccaggat cgcgtcgatg cgcgcggtcg aagacccgag ggcctctgcc tcctgcgaga
     4561 tccgttccac ccgttcgact atctgctcga gctgtcccac cgtgctacgg acgacgtccg
     4621 ccgccgacga cccggtccgt gtcactgcgt ccgccgacgc ggtgaccacc tcggccatct
     4681 gcgcgatctg tgccgcggtg ctagccagct cgtgcatgga cgacgtggtc tgcgtcaggg
     4741 cggcggcctg ctgcgtcgaa ccggccgccg cctgacccgc cgttgccgtc agctcggcag
     4801 cactctgcgc cagcatccgg ctcgccgact gcatcgcttc gaccaccccg cgcacggagt
     4861 ccaaggtgcc gtccaacgac gaccagaccg ggcccacgac caggttcaca tccgcgccgg
     4921 tgtcctcacg cggggcaagg tcgccgccgg ccaccctggt cagctcggct gacagtcgct
     4981 ccacctcgtt gccgagtgcc aggcgggcgt tctcggactc gtcgcgcagg atgcgcaacg
     5041 cgcgcacgat ggctaccgcg aacaccgtgg tcacgaccag cgcgacgcac gcgaccgcaa
     5101 ctgcactcca ggagttctgc ggcagcgtcc cggaagtccc agctgtgaca gctgtggtca
     5161 cggcgcacag ggcaccgaat ccgtatgcgg caaccggcgc gagctgcacc gccgcgagga
     5221 ccaccagcag gaagtagaac gcgtacacgg ccgcggggaa tccgcccagc agctggcagc
     5281 acagggccac cgcgacccag aacgtcagca gcacgacgcc gtcgaaggtg cgttcatgcc
     5341 gagacatcca ggtgtcctgg ccgtaggcac gcaaccgcgc tacgagcagt gcgggcacca
     5401 gcacgacgat gacggccatg accacgatcg ccaggacggg caccgggagg ctgtcgagca
     5461 gcaccgcgag tacgagcaac gcaggtgcgg ccacagcgag ggagactgca agggccgtcg
     5521 tgattcgcag gatccgatgg tcgaacgtca cgaaggcgtc ccgttctcgt cgagcccgcc
     5581 cgcggcgcgg caggcagttc gcctccttca tcgaccgatc gggtgcgcac ttgagcccgc
     5641 taccgtgtga ctcgccatga ccgagccgac ccgcaccaca ccgagtccga catcgccaca
     5701 ctcacctccc agccggcccc gaggggtgcg tacgtaccac ccgaggcgcg gccgactcac
     5761 ggacgacaaa cgcaaccggg tggccgacct gctcacgagg ttcggggttc ccgccaccgg
     5821 tgagctcgat ctcgcagcgc tgttcccggg gctgcccgtg gtgctcgaga tcggcttcgg
     5881 gatgggcgag gcgacagccc acatggctca ggccgacccg ggtaccggga tcctcgccgc
     5941 ggacatccat actccgggag tcctgcggct gctgactctg gtggagcggg agggcatcag
     6001 caacgtccgg gtcgctcacg gggacgcctt ggagctgctg gccgaacagg tcccgaaggc
     6061 atcgctcgca ggggtgcgcg tcttcttccc cgacccgtgg cccaaggccc gccaccacaa
     6121 gcgccggctg gtccagagcc cggcggtgtc tttggtggtc agccggatcg agcccggtgg
     6181 cttcctgcac ctggcgaccg acgtcgccga ctacgccgcg ctcatgcttg acgtggtgaa
     6241 ctcagaacca ttgctgcaca acgactacca gggcttcgcc ccacgccctg ccgaccggcc
     6301 actgacccgg tacgaagccc gcggctgcga caacggccgt ccggtcgccg atctcgttct
     6361 ccgccggctg ccgacctaga acgggtcagc gtcaggcggt gctccagggc gaccagccct
     6421 gctcgaccca gatccggtag gcgacgatgt cctgctgggc gcagctggcg agctcggggc
     6481 gggccgcgaa cgcccggcca ccgtgcccct gccacagtcc ctgcgtcatc tgccaacagc
     6541 cgcggtatgt cccgctggcg gacacgtcac gacagttccc accgctctcg gcacgcacca
     6601 cgtggcgggc tgtggccgag gcgcgccaga cgctcatcgg gatagcggcc cgcgccctgc
     6661 tcgagtgcat cgctgccggg ctgcgcgtga tgtcaccccg gtacaccgcg accggcttct
     6721 tggccggcga cttcttcgcc gccgccttga gctgagctgc tcgcgcggcc gcagctgccg
     6781 cgcgggcccg ggccacggcc ctagccttgg ctgcggcctt ggccttggcc ttggccttgg
     6841 ccgcagcggc tgccttcgcc ttcgccgcgg cgatctggtt cgcccgagcg gtcgcggcgg
     6901 cccgcagcct caccgtctgc gcgagctgtg ctgcggtcgg cgggcgggtg ccgtccgcga
     6961 gcagggcgac gtgggcgctg atgctcaggc tgcctgggct gtagccggtg cggtacaccg
     7021 ggaactgtgg gtccgctact gcgccgtcga aggttgaccc ctccacgaag gccacggcat
     7081 tggtggcacc cgcgtcggcg gcgtgcgccg cagcgaccca gccaccaccg gctagcgcga
     7141 tggcgaggcc accgatgagc gcgacacgat gcccacccga tcgctggggc gggagtctgt
     7201 ggcgtgacga acgtgacgaa gcggacatgg atcctccgac tcgcctacga ggtgagctgt
     7261 cgggttgggc cagaggatca ggcctgccgc agagtccgcg gcttcacccc gagaccgtca
     7321 ctggcggtga cggtcggatg tgggtccccc gctcccgtcc ggagcgtgtc ccacggccgg
     7381 ggacgggact cggcgagccg gccgtgacga ccctgcttcc ccacagggcc gagcgtgacg
     7441 ctagcccatc agggcctcgc cgtcgacggg cggtacagcc ctgcgagctc gttcagaggg
     7501 cctcagacca cgacacaccg tcaccaccag cgtcgatcac actatgtaac tgatcgaata
     7561 cgcggtagca atcgaccgtc agcctggctc cacgccgact cccacccacg tcacggcgtc
     7621 gcgtcgtagt gtccggctca ggggatcgag ggcggccgag accatcagga gatcgatcat
     7681 gaagagcacg atgcagcacg tcccgctggc gatctcgcgt ctgctgaacc aggggtcgag
     7741 gttccacgcg acctccaccg tggtcacctg gaccggtgac gggacccgga ctctcacgta
     7801 tgcacaggtc ggagccaggt ccgctcagct cgcccatgcc ctgcgtggtc tcggcgtcga
     7861 cgcggaccag cgggtcgcca ctttcatgtt caacaacaac gaacatctcg aggcgtacct
     7921 cgcggtcccc agcatgggcg cggtgctgca cacgctcaac atccgcctgt tcccggagca
     7981 ggtctcgtac atcgccacgc acgccgagga tcacgtcgtc atcgtcgacg gtgccctggt
     8041 accagtgctt tccaagatcc tgcccgacat gccgaccgtt cgccacgtca tcgtcaccgg
     8101 cggcgcggac ggcactgtgc tgaagcgacc cggcgtcgag gtccatgcgt acgaacaact
     8161 tctggccgcc cagccgacgg agttcaagtg gcccgagatc gacgaggatg acgcggctgc
     8221 gctgtgttac acgagtggca ccaccggcaa tcccaaggga gtcgcctaca gccaccgttc
     8281 catctggctg cactcgatgc aggtctgcac cgccgaggcc ttcggattcg gaccggccga
     8341 caaggtgctc gcggtcgtgc cccagttcca cgcgatgtcc tggggactgc cgtacgccgc
     8401 gttcatgagc ggggcctcgc tggtcatgcc ggaccggttc ctgcaggccg agcccttggt
     8461 ccggatgatc gagcaggagc gtccgacgct agccggcgcc gtcccgacga tctgggcgga
     8521 cctgttgcgc tacttggacg atcacggtgg tgacatatcc agcctgcgcg aggtggtggt
     8581 cggcggctcg gcagtgccgc cgaccttgat gcgggcgttc ctggaccgct acggcctgcg
     8641 catcgtccac gcctggggga tgacggagac ctcaccgctc ggctcggtcg cgcgaccgcc
     8701 cggcggcctg gacgagcaga gcgagtggga gtaccggatc agccagggtc ggctgcccgc
     8761 atccgtggag ggccggcttg tcggccccgg aggtgaggtg ctcgctcacg acggggtctc
     8821 cgtgggtgag ctggaggtac gcggcaactg ggtgaccggc agctatctgc acgacccggc
     8881 cccggagaag ttcgacgacg gctggctgcg taccggcgac gtgggttcgc tgaccccgga
     8941 cggcttcctg cacctgaccg accgg
//
LOCUS       DASYFY010000019         4436 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_841818, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000019 DASYFY010000000
VERSION     DASYFY010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4436
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_841818"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VGN19_00375"
     CDS             complement(<1..288)
                     /locus_tag="VGN19_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEV7194368.1"
                     /translation="MAAEVPDARSESDLPIKPVYDATALDGFDAEAKLGVPGQYPYTR
                     GVYPTMYTGKPWTMRQYAGFGTAKESNERYHELVANGTGGLSVAFDLPTQMG"
     gene            complement(419..916)
                     /locus_tag="VGN19_00380"
     CDS             complement(419..916)
                     /locus_tag="VGN19_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7194369.1"
                     /translation="MARAARGDAGVERERFVERFGSALTAAGMQRLPSRVFACLLAQD
                     TGRMTAAEIGDALSVSPASVSGAVRSLQQMRMIHREREPGTRRDVYVVADDAWHDVMM
                     NTSAVYGPLTQTLREGVAMVGGPGSGAGDRLALSVAFLEFVTEEMAGLAERWDKRRAE
                     LDLLP"
     gene            971..1912
                     /locus_tag="VGN19_00385"
     CDS             971..1912
                     /locus_tag="VGN19_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194370.1"
                     /translation="MAPVIEANGLRKNFGSTTALDGLDLTVYEGEVHGFLGPNGAGKS
                     TTIRVLLGLLRSDGGTVTLMGRDPWRDATELHRQLAYVPGDVVLWPNLTGGEVIDLLG
                     RLRGGVDRGKRDKLLEAFELDPTKKGRSYSKGNRQKVALVAALASEVPLLLLDEPTSG
                     LDPLMEKVFEEQVSQARSEGRTVLLSSHILSEVEATADRVSIVRAGRVVDTGTLTDLR
                     HLTRTNVVATLATPLAVTEAARWPGVDTARLDRDRLVMSVETSAVGDVVRRLGTHGIQ
                     ALTCQPPTLEELFLSQYRDDLSTETPASPTPREGVSA"
     gene            1909..3495
                     /locus_tag="VGN19_00390"
     CDS             1909..3495
                     /locus_tag="VGN19_00390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide antibiotic transporter"
                     /protein_id="HEV7194371.1"
                     /translation="MSTFAGTGPLLRLAWRRDRWIILTCVLVLAATAYGSMAATLGLY
                     PNPADAAAGAKVIADNPSLTALYGPLPSLTAQGIGVLKTVMMGSLFTAFLAFAIVRRH
                     TRTEEEDGRFELVAGGVVGRRAPLAAAVLLAVAAVLATGGLSALSLLPTGADVTGSLA
                     LGTVEVVAGLVMTGITAVAVQLTSTTRGAGGIAVAALGLSFVLRALGDTASGRGQDVR
                     DASFLGWAEQVSPFGANRLWWLLPALAVTVALLAVADQLLQRRDLGSGLWASRPGPAQ
                     ATARLSTSLGLAWRLQRGSLLGWTLGYAVLGLVVGSIATSVNQIAASPGMADMLRKMS
                     GGQGSLVDVFFGAELRFLAIGAAAYGIATALRLRSEESSGRAEVVLATQVSRLRWLAS
                     HASIAALGALWLLAVSGTAAGLSASASTTGVGELLPAALATAPAVLVCVSLTMVLFGF
                     LPRWSSLAWGVLALFVLLGEFGALLKLPAWALGASPFDHLGSLPGGEANGLGLFALVG
                     VAVALGVVAAAAFRRRDLAT"
     gene            complement(3653..>4436)
                     /locus_tag="VGN19_00395"
     CDS             complement(3653..>4436)
                     /locus_tag="VGN19_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEV7194372.1"
                     /translation="LLEARDPDAVLGSFAADHVIGDEGAFRECVASALCAAQEGFVVT
                     IGIEPTHAATGFGYIELGEPLGSGQACAVTQFVEKPDRARAEAYLATGRYRWNAGMFV
                     VRASVLLDLLAQWHPDLAAGLRALAASPGRLDELWPGLEKIAIDHAVAEPAAAEGRVA
                     VVPGGFGWDDVGDFRSLGGLLADAEGMPQVRVLGDASLLQMVDSSGVVVPGSGRVVAV
                     VGLDDVVVVDTPDALLVTTRERAQDVKAVVDALRAAGRTDLL"
BASE COUNT          621 a         1654 c         1482 g          679 t
ORIGIN      
        1 gcccatctgg gtcggcaggt cgaacgcgac cgacagtccg ccggtgccgt tggcgacgag
       61 ctcgtggtac cgctcgttgg actccttggc ggtgccgaac ccggcatact gccgcatcgt
      121 ccacggcttg cccgtgtaca tcgtggggta caccccacgg gtgtacgggt actgccccgg
      181 gacgcccagc ttggcctcgg catcgaaccc gtcgagagcc gtggcgtcgt agaccggctt
      241 gatcggcagg tcggactcgg agcgtgcgtc agggacttcg gcggccatgt gccggagcct
      301 aatgcgcggg tatgccgtgg ggtcgccacc cgtggtcaac ctcaccccac cctgcctcct
      361 ccgacttatt gccctcgatc caccgttttg accgcgaatt ccccgggaaa cggtcgactc
      421 agggcaataa gtcgagctcg gcgcgccgct tgtcccagcg ctcggctagc ccggccatct
      481 cctcggtgac gaactcgagg aaggcgacac tcagggcaag ccggtcgccg gctccgcttc
      541 ccggaccgcc gaccatcgcc actccctcgc gcagggtctg ggtcaacggc ccgtagaccg
      601 cggacgtgtt catcatgacg tcgtgccacg cgtcgtcggc gaccacgtag acgtcgcggc
      661 gagtccccgg ctcacgctcc cgatggatca tccgcatctg ctgcagggag cgcaccgcac
      721 ccgagaccga cgccgggctg accgagaggg catcgccgat ctcggccgcc gtcatccggc
      781 cggtgtcctg cgccagcagg cacgcgaaga cgcgcgaagg caggcgctgc atccccgcgg
      841 ccgtcagcgc cgaaccgaac cgctcgacga agcgttcgcg ctccacgccc gcgtcgcctc
      901 gcgctgccct tgccatgccc aacactttag accattcaga aacttctgaa cactgtgtat
      961 catcaatccc atggcacctg tcatcgaggc caacggcctc cgcaagaact tcggcagcac
     1021 gaccgctctg gacggactcg acctcacggt ctacgagggc gaggtccacg gcttcctggg
     1081 accgaacggc gccgggaagt ccacgaccat ccgcgtcctg ctcggcctac tgcgatccga
     1141 cggcggcaca gtcaccctga tggggcgcga tccctggcgc gacgcgaccg agctgcatcg
     1201 ccagctggcc tacgttcccg gcgatgtagt cctatggccc aacctcaccg gcggcgaggt
     1261 catcgacctg ctcggacggc tgcggggcgg ggtcgaccgg ggcaagcgcg acaagctgct
     1321 cgaggccttc gagctcgacc cgaccaagaa ggggcgctcg tactccaagg gcaaccggca
     1381 gaaggtcgcc ctcgtcgccg ccctcgcctc agaggtcccg ctcctcctgc tcgacgagcc
     1441 gacctcgggc ctggaccccc tcatggagaa ggtgttcgag gagcaggtct cccaagcccg
     1501 ctccgagggc cgcaccgtgc tgctctccag ccacatcctg tccgaggtgg aggccaccgc
     1561 cgaccgggtc agcatcgtca gagccggccg ggtggtcgac accggcacgc tcaccgacct
     1621 gcgccacctc acccggacca atgtcgtcgc gaccctggcc accccactgg ccgtcaccga
     1681 ggccgcgcgc tggccgggcg tcgacacggc gcgcctggac cgtgaccggc tggtgatgtc
     1741 ggtcgagacc agcgccgtgg gcgacgtggt ccgacgactc gggacccacg gcatccaggc
     1801 cctcacctgc cagcccccca ctctcgagga actgttcctg tcgcagtacc gcgacgacct
     1861 ctcgaccgag acgccggcct cccccacccc tcgggagggg gtgtccgcgt gagcaccttc
     1921 gccggcaccg gcccgctgct gcggctcgcc tggcgacggg accgctggat catcctgacc
     1981 tgtgtgctcg tgctggccgc cacggcctac gggtcgatgg ccgccaccct cgggctctac
     2041 cccaacccgg ccgacgccgc cgcgggggcc aaggtcatcg ccgacaaccc ctccctcacc
     2101 gcgctctacg gcccgctgcc ctcactcacc gctcagggca tcggcgtact caagacggtc
     2161 atgatgggca gcctgttcac cgccttcctg gctttcgcga tcgtgcgtcg gcacacccgc
     2221 acggaggagg aagacgggcg gttcgagctc gtcgcgggcg gggtggtcgg tcggcgcgct
     2281 cccctggctg ccgcggtgct gctcgccgtc gctgccgtcc tggccaccgg tggcctgtcg
     2341 gcgctgagcc tgctgccaac cggagccgac gtcaccggct cgctggcgct gggcaccgtc
     2401 gaggtggtgg ccggactggt catgaccggc atcaccgctg tggccgtcca gctcacctcg
     2461 acgacgcggg gtgccggcgg gatagctgtg gcagcgctag ggctgtcctt cgtccttcgt
     2521 gccctgggcg acacggcttc cggacgcggc caggacgtcc gcgacgcctc cttcctcggt
     2581 tgggccgagc aggtcagtcc cttcggggcg aaccgcctgt ggtggctgct cccggcgctg
     2641 gctgtgacgg ttgcactgct cgctgttgcc gatcagctgc tgcagcgacg cgacctcggc
     2701 tccggactgt gggcgtcgcg gcccgggccc gcccaggcga cggcccgctt gagcacctct
     2761 cttggccttg catggcgctt gcagcgcggg tcgctgctgg gctggaccct cgggtatgcc
     2821 gtgctcggac tggtggtcgg cagcatcgcc acctccgtga accagatcgc cgcaagtcct
     2881 ggcatggcag acatgttgcg gaagatgagc ggcggccagg gctcgctcgt cgacgtcttc
     2941 ttcggggccg agctgcgctt cctcgcgatc ggggctgcgg catacggcat cgccaccgcg
     3001 ttgcggctgc ggtccgagga gagctcgggg cgagcggagg tcgtgctcgc cacccaggtg
     3061 agcaggctgc ggtggctggc cagccacgca agcatcgccg cactgggagc gctctggctg
     3121 cttgcggtgt cggggaccgc agcggggctg tccgccagcg cgtcgaccac cggggtcggc
     3181 gagctcctgc cagccgcact cgccaccgcg ccggccgtcc tggtctgcgt gtcgctaacg
     3241 atggtgctgt tcgggttcct cccccgatgg tcgagcctgg cgtggggggt gctggccctg
     3301 ttcgtcctgc tcggcgagtt cggtgccctg ctcaagcttc ccgcgtgggc gctgggggcc
     3361 tcgccgttcg accacctcgg cagcctgccg ggcggtgagg ccaacggcct gggactgttc
     3421 gccctggtcg gggtggccgt cgccctcggg gtcgtcgccg cggccgcctt ccgccggcgc
     3481 gacctggcca cctgaggttg cccggcaggt cgttgtccga cccagcacag gttgctgccg
     3541 cagggcgatg ctgcaccatg tgcccactgc agcaccgtct gctagcagag gttgctgcag
     3601 acggtcaggg ctgcagacgg tcagggctgc agacggtcag ggcgtcaggg cgtcacagca
     3661 ggtcggtgcg gcccgcggcc cgcagggcgt ccaccacggc tttgacatcc tgggcgcgct
     3721 cgcgagtcgt gaccagcagg gcatcgggag tgtccacgac gaccacatcg tcgagcccca
     3781 ccaccgcgac cacccggcca ctgcccggca ccacgacgcc agaggagtcg accatctgca
     3841 gcagcgaggc atcgccgagg acccgcacct gcggcatacc ctccgcgtcg gcgagcaggc
     3901 caccgaggga acggaagtcg cccacgtcgt cccagccgaa tcctcctggc accacggcca
     3961 cccgcccttc ggcggccgcg ggctcggcca cggcgtggtc gatcgcaatc ttctccagcc
     4021 ctggccagag ctcgtcgagg cggcccggcg acgccgccag cgcgcgaagc ccggcggcga
     4081 ggtccggatg ccactgcgcc agcagatcca gcagtaccga cgctcgcacc acgaacatgc
     4141 ccgcattcca gcggtaccga ccggtcgcca ggtacgcctc ggcgcgggct cgatccggtt
     4201 tctcgacgaa ctgggtcacc gcgcaggcct ggccggagcc gagcggctca cccagctcga
     4261 tgtagccgaa ccccgtcgcg gcgtgcgtcg gctcgatccc gatggtgacg acgaagccct
     4321 cctgcgccgc acacagcgcc gacgccacac actctcgaaa ggcgccctcg tcgccgatca
     4381 catggtccgc cgcgaacgag ccgagcaccg cgtcggggtc gcgtgcctcg agcagg
//
LOCUS       DASYFY010000020         3572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_684428, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000020 DASYFY010000000
VERSION     DASYFY010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684428"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1324
                     /locus_tag="VGN19_00400"
     CDS             <1..1324
                     /locus_tag="VGN19_00400"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEV7194373.1"
                     /translation="GTRLPSERELSAALMLSRTTVTRAYAELRDRGYLTSRQGSGHVV
                     TLPGSAAGRRQGSSLDPAIDRRSSEIIDLTCASMSAPAGIVTAYERAMDQLPRYLAGT
                     GYHPLGLLGLRESLAQRFTERGLPTSPEQVMVTSGALAGLAVTARALLSPGDRVMVES
                     PTYPNAVDTLRRAGARAVGLPLERGGWDIESAQATLRQTAPRAAYLIPDFQNPTGALM
                     SDAQRAALGDALDATRTLGIVDETIVDLAHTADFVMPRPLAAHHTASVTVGGASKSFW
                     GGLRIGWIRAPRDLMPALVSARLTLDLGAPVLEQLALVELLAHRDEVLAARRAAVVAT
                     RDTLVNALAGRLPQWRFQVPQGGLCLWVELPEALSTPLCVAADQRGVVLAPGSQFAVD
                     GGMERFLRLPFTGHAPEVVVDAVDRLAQAWAVAQDARAVRPSRSPLVA"
     gene            1361..2308
                     /locus_tag="VGN19_00405"
     CDS             1361..2308
                     /locus_tag="VGN19_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HEV7194374.1"
                     /translation="MTTASPSDVDPLADLLDTLDLEELGTARITVEGVGDSTDFGESG
                     ATVFLGRSQRMPHGRVFGGQVLAQCIIAAGRTMADIDDGDGPRHIHSLHGYFMRPGDD
                     TQPIRFAVERMRDGRSFSTRRVHAIQDGLPILSMITSFQEAADGLDHQDPMPDVPGPD
                     SFASLHDQLEGIDHPGARHLANRPIEHRHISGNLFLGPGAQHDAHQGVWMKAVGALPD
                     DPLIHAAVLAYASDYTLLEPVLRKHGLAWTDPRLRPASLDHAMWFHRPVKADEWVLYD
                     EESPSASGGRGLGIGRMFSADGVLVATVAQEGMVRLKKS"
     gene            complement(2312..>3572)
                     /locus_tag="VGN19_00410"
     CDS             complement(2312..>3572)
                     /locus_tag="VGN19_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3459 domain-containing protein"
                     /protein_id="HEV7194375.1"
                     /translation="LDVVHNHLGPVGNYLARFGPYFSDGHETPWGEALNLDGDASFHV
                     RRWVVDNALRWFAGFHLDALRLDAVHELHDDSERHVLAQLSDEVAALSTRLGRPLTLV
                     AESDLNDPVTVTPTRAGGLGMEAQWDDDVHHALHVALTGETQGYYSDFAGHSRALPDG
                     GPLTVLAKTLTRGFLHDGTWSSFRDQRWGAPVDRQKLDGRRLVAYLQTHDQVGNRALG
                     ERIGALVGPGQQAIGAALYLTSAFTPMVFMGEEWAASTPFQFFTDFDDPQMSAAVSEG
                     RRREFATHGMAWDDVPDPQDETTYRRSQLRWDELEDPEHGRMLRWYHDLIALRRNECV
                     LLDGRLDRVEVEVDEAAQWLVLRRGALLVVANFAPTARWSVPLPPEAEELVLAWDPEQ
                     TRLQRGGIHLPPQSVAVVRAGRSLPTS"
BASE COUNT          518 a         1327 c         1205 g          522 t
ORIGIN      
        1 cgggacccgg ctgcccagcg agcgcgagct cagcgcagcg ctcatgctca gccggacgac
       61 cgtgacccgc gcgtatgccg agctgcgcga ccgcggttat ctcacctcgc gccaaggttc
      121 gggccatgtg gtcacactcc ccgggagtgc ggctggtcgg cgacagggca gctccctcga
      181 tcccgcgatc gatcggcgct cgagcgagat catcgacctc acctgcgcgt ccatgagcgc
      241 acccgctggc atcgtgacgg cgtacgaacg cgctatggac cagctccccc gctacctcgc
      301 tggaactggc taccacccgc tgggcctgct cggcctccgc gagtccctcg cgcagcgctt
      361 caccgaacgg ggactgccga cctcacccga gcaggtcatg gtgaccagcg gcgccctggc
      421 cggcctggcc gtgacggcgc gggccctgct ctcccccggc gaccgcgtca tggtcgagag
      481 ccccacctac cccaacgcgg tcgacaccct gcgccgggcc ggagcgcgtg cggtgggact
      541 gcccctcgag cgaggcggct gggacatcga gtccgcgcag gcgacgctac gccagaccgc
      601 cccccgcgcg gcgtacctga tcccggactt ccagaacccc acgggggccc tcatgtcgga
      661 tgcccagcgc gccgccctcg gcgatgccct cgacgccacc cgaacactcg gaatcgtgga
      721 cgagaccatc gtcgacctcg cccacaccgc ggacttcgtg atgccacgcc cgctggccgc
      781 ccaccacacg gcgagcgtga cggtgggcgg tgcgagcaag tcgttctggg gtggtctgcg
      841 catcggctgg atccgggcgc cccgcgacct catgcccgcc ctggtgagcg cccggctgac
      901 gcttgacctc ggggcccctg tcctcgagca gctcgccctg gtcgagctcc tcgcgcatcg
      961 ggacgaggtc ctggccgcac gacgggccgc cgtcgtggcg acccgggaca ccctcgtcaa
     1021 cgcgctcgca gggcgcctgc cgcagtggcg gttccaggtg ccacagggtg gcctgtgcct
     1081 ctgggtggag ctgcctgagg cactctccac acccctctgc gtcgcggccg accagcgcgg
     1141 ggtagtcctg gcacctggtt cgcagttcgc cgtcgacggc ggcatggaac ggttcttgcg
     1201 actgccgttc accggccacg caccggaggt cgtcgtcgat gctgtcgacc ggctggcaca
     1261 ggcctgggcc gtcgcgcagg acgccagggc cgtccgcccg agccgttcgc cgctcgtggc
     1321 ctgaacgggc gccgccttcc ccgcccgcta tggtcgccac gtgaccaccg cgagcccgtc
     1381 cgacgtggac cctctggccg acctgctcga caccctcgac ctcgaggagc tgggcaccgc
     1441 ccggatcacc gttgaggggg tcggcgactc caccgacttc ggcgagtccg gggccacggt
     1501 ctttctgggg cgcagccagc ggatgcccca tggccgggtc ttcggcggcc aggtcctcgc
     1561 gcagtgcatc atcgccgcgg gccgaaccat ggcggacatc gacgacggtg acggcccacg
     1621 ccacatccac tcgctgcatg gctacttcat gcgtcccggc gacgacaccc agccgatccg
     1681 tttcgcggtg gagcggatgc gtgacggtcg ctcgttctcc acccggcgcg tgcacgcgat
     1741 ccaggacggc ttaccgatcc tgtcgatgat cacctcgttc caggaggccg cggacggact
     1801 ggaccaccag gacccgatgc ccgacgtccc gggcccggac tcgttcgcct ccttgcacga
     1861 ccagctcgag ggcatcgacc atcccggtgc ccgtcacctg gcgaaccgac cgatcgagca
     1921 tcggcacatc tcgggcaacc tcttcctggg gccgggcgcg cagcacgatg cccaccaggg
     1981 cgtgtggatg aaggccgtcg gagcgcttcc ggacgacccg ctgatccacg ccgcagtgct
     2041 cgcgtacgcc tccgactaca ccctgctcga gccggtgctg cgcaaacatg gcctggcgtg
     2101 gaccgaccct cggctgcgac cggcaagcct cgaccacgcc atgtggttcc accggcccgt
     2161 caaggctgac gagtgggtcc tctacgacga ggagtcgccc tccgcctctg gcggccgggg
     2221 cctcggtatc ggccgcatgt tctcggccga cggggttctc gtggccaccg tggcccagga
     2281 agggatggtc cggctcaaga agtcctgagt cctacgacgt cggcagcgac cgcccggcac
     2341 gcacgacggc cacactctgc ggcggcagat gtatgccgcc gcgctgcagg cgggtctgct
     2401 ctgggtccca ggccagcacc agttcctcgg cctcgggcgg caagggcacc gaccagcgcg
     2461 ccgtgggcgc gaagttggcc acgaccagca gcgcgccccg tcgcagaacc agccactggg
     2521 ccgcctcgtc gacctcgacc tcgactcggt cgagccggcc gtcgagcagg acgcactcgt
     2581 tgcggcgcaa ggcgatcagg tcgtggtacc agcgcagcat ccggccgtgc tcggggtcct
     2641 cgagctcgtc ccaccggagc tgggaacgac ggtaggtggt ctcatcctgg gggtcgggca
     2701 cgtcgtccca ggccatgcca tgcgtcgcaa actctcggcg ccggccctcc gagacggccg
     2761 cactcatctg cgggtcgtcg aagtcggtga agaactggaa cggcgtgctc gccgcccact
     2821 cctcccccat gaacaccatc ggggtgaacg ccgaggtgag gtacagggcc gcaccgatgg
     2881 cctgctggcc aggacccacg agggcgccga tgcgttcacc cagcgcgcgg ttgccgacct
     2941 ggtcgtgggt ctggaggtac gccaccagcc gccggccgtc cagcttctgg cgatcgactg
     3001 gagcccccca cctctggtcg cggaagctcg accacgtccc gtcgtggaga aaccctcggg
     3061 tgagcgtctt ggcgagcacg gtcagcggtc cgccgtcggg cagcgcgcgg gagtggccgg
     3121 cgaaatcgct gtagtagccc tgtgtttcgc cggtgagggc gacgtgcaga gcgtggtgaa
     3181 cgtcgtcgtc ccactgcgcc tccatcccga ggccacccgc gcgcgtgggg gtgaccgtga
     3241 cggggtcgtt gaggtcgctc tccgcgacga gcgtcagcgg gcgacccagc cgggtcgaca
     3301 gggccgccac ctcgtccgac agctgggcca gcacgtgccg ttccgagtcg tcgtggagct
     3361 catggaccgc gtcgagccgc aaggcgtcga gatggaagcc ggcgaaccag cgcaacgcgt
     3421 tgtccacgac ccagcgccgc acatggaagc tggcgtcgcc gtcgaggttg agcgcctccc
     3481 cccagggagt ctcatgccca tcggagaagt acggcccgaa gcgcgccagg tagttgccga
     3541 caggccccag atggttatgg acgacatcga gg
//
LOCUS       DASYFY010000021         4671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_579130, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000021 DASYFY010000000
VERSION     DASYFY010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4671
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579130"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /locus_tag="VGN19_00415"
     CDS             complement(<1..304)
                     /locus_tag="VGN19_00415"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEV7194376.1"
                     /translation="MTTSSQTQPRRRPVLRQTDHNQSATRLLASSAKHSYDPVVDIAW
                     DEPLAPDLYGMSPEWSSLYGTRLWEGLSFEEQIRLTQHEFSSISGVGIWFEMILMQM"
     gene            363..1040
                     /locus_tag="VGN19_00420"
     CDS             363..1040
                     /locus_tag="VGN19_00420"
                     /inference="COORDINATES: protein motif:HMM:NF039596.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7194377.1"
                     /translation="MTSSTVKGAAAASDGRSRRWQEHKLARRHEFVDAAVTAIRVDGE
                     RTGLDAICAVAGVSKPVIYRHFRDKADLFRAVLHQIASEIFLPRIAAELDPEQGDEEI
                     LRAAIGAYVGLVSEEPQLYRFVFAHNALGERGDFVASMEDAVAQALVGLISRRLAEAG
                     RPSFAAEPWAYGIVGMVQLATHRWVDRQTASQDELVELLVSLAWQGLMQVAPEEPSET
                     SRHTRLL"
     gene            1037..1558
                     /locus_tag="VGN19_00425"
     CDS             1037..1558
                     /locus_tag="VGN19_00425"
                     /inference="COORDINATES: protein motif:HMM:NF042643.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6584 family protein"
                     /protein_id="HEV7194378.1"
                     /translation="MSEQTPKPAESGAVHRARTDLAAGREWKARDRLVGHLAGEYDAE
                     ALELLGEVLYAMRDLPSAGGAWFGTGRRGHDVDESIEAWRERHHDHFPEMWRSLPRSV
                     RDHDGNKRVDALRRKVVQQRAEDQGASGAPSSSAPGGGGIDTAVVIAVALAVVFVVCA
                     IIGFVTAVGWMVH"
     gene            1637..1828
                     /locus_tag="VGN19_00430"
     CDS             1637..1828
                     /locus_tag="VGN19_00430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194379.1"
                     /translation="MDNITDVLLLRAVQGWCDECEAEQVLMPVLDEAPGGFCCAACDT
                     AVFAGLDDLAAVAALRMSA"
     gene            complement(1835..3211)
                     /locus_tag="VGN19_00435"
     CDS             complement(1835..3211)
                     /locus_tag="VGN19_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018762748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein"
                     /protein_id="HEV7194380.1"
                     /translation="MTAGDPAYGGLMTQARAATDAQIRNAAWQVLRDNDLGHLTTAAP
                     HLYPHLWSWDAAFVAIGLARVDVPRAIRELETLLGAQWTTGMIPHIVFSDDETGYFPG
                     PDRWGTDTAAARPVSVRTSGICQPPVHAIALRHIVDRARENGGADQAAAEDFLAGSFD
                     GWLAWHRWLASARDPQRVGLVEIHHGWESGFDNSPRWDGPYARVRPGPVEPFVRRDTL
                     HVSDPGQRPDDLEYTKYLWLVQQLASVDYDDQLVVDAVDFRVRDVFFSAILAAASDVL
                     ADLGDEVARPDAAAELREIARRFRAGVASTIDPSTGLARDFDVLAGEWISTQTVSGFA
                     PLVAGGEADLLRDQRVLLAGSDWMGEPRLRFPLPPSTSPVSPDFRPRKYWRGPVWPFL
                     NLLLGWACARDGAADLHEALRTASLDQLSDLTFGEYYEPFTGEPLGSLAQSWTAAAAL
                     EWLGSSGA"
     gene            complement(3336..4280)
                     /locus_tag="VGN19_00440"
     CDS             complement(3336..4280)
                     /locus_tag="VGN19_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020074720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEV7194381.1"
                     /translation="MSTNPAAESAALDAYSAIVTSVAARLTPKVAALRIRSRRGESAG
                     SAVVLTGESHLVTNAHVVGDASGGSAEFADGTVARFEVVGRDPLSDLAIVRADREVPA
                     PPEYGDASSLLVGSLVVAVGNPLGLSGTVTAGVVSALGRSMPVRTRTTARLIEDVIQT
                     DAALNPGNSGGALADSRGRVIGINTAVAGVGLGLAVPINATTHRIIHALMHDGRVRRA
                     YLGLVSTPARLTPAQAERYGQRGALRVVEVVEHSPAAQSGLLAGDLVLAIDSAPLGDA
                     QSLQKRLFAEAIGQRMEVTVIRNGALVDAVVLPSELPD"
     gene            complement(4426..4596)
                     /locus_tag="VGN19_00445"
     CDS             complement(4426..4596)
                     /locus_tag="VGN19_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194382.1"
                     /translation="MDTYQSHLQEDGTTFPPVTPDAPIPPGVDLPEVPETVIAPPETD
                     DEHDPSEVDAPD"
BASE COUNT          729 a         1589 c         1645 g          708 t
ORIGIN      
        1 ccatctgcat gaggatcatc tcgaaccaga tcccgactcc ggagatcgac gagaactcgt
       61 gctgagtcag ccgaatctgc tcctcgaagg agagtccctc ccacagtcgc gtcccgtaca
      121 gcgaggacca ctccgggctc atgccgtaca ggtcaggagc caggggttcg tcccaggcaa
      181 tgtcgaccac ggggtcgtac gagtgcttgg ccgacgacgc cagcagccgg gttgcgctct
      241 ggttgtggtc ggtctgtcgc agcacggggc gacgtcgagg ctgagtctgt gacgacgtgg
      301 tcatgggtct ggccctccgc gatagttaac tgtaaatcgc atttacagtt aacatggttg
      361 ccatgacgag ctcgactgtc aagggggcgg ccgccgcgtc ggatgggcgg tcgcggcgct
      421 ggcaggaaca caagcttgcc cgtcgtcacg agttcgtcga cgcggcagtg acggccatcc
      481 gggtcgacgg agagcggacc gggctggacg ccatctgcgc cgtcgccggg gtcagcaagc
      541 cggtgatcta ccggcatttc cgtgacaagg cggacctgtt cagggcggtc ctccaccaga
      601 tcgccagcga gatcttcctg ccgcgcatcg ctgccgagct cgaccccgaa cagggcgacg
      661 aggagatcct gcgggcagcc atcggcgcct acgtggggtt ggtgagcgag gagccgcagc
      721 tctaccggtt cgtcttcgcc cacaacgcct tgggggagcg gggcgacttc gtggccagca
      781 tggaggatgc cgtcgcacag gcgctggttg ggctcatcag tcgccggctg gctgaggcag
      841 gacgcccctc gttcgccgca gaaccctggg cgtacgggat tgtcggcatg gtccagctgg
      901 cgacgcatcg gtgggtcgac cgccagacgg ccagccagga cgagctcgtc gagctgctcg
      961 tctccctcgc ctggcagggg ctgatgcagg tggcgccgga ggagccttcg gagacttcac
     1021 ggcatactcg cctcttgtga gcgagcagac ccccaagccg gccgagagtg gcgccgtgca
     1081 ccgagcccga acagacctcg cggcgggccg cgagtggaag gcgcgtgacc gactcgtcgg
     1141 gcatctcgcg ggcgagtacg acgccgaggc tctggagctc ctgggggagg tgctctatgc
     1201 gatgcgcgac ctgccgtccg cgggcggcgc ctggttcggt accggccgtc ggggtcacga
     1261 cgtggacgaa tccatcgagg cgtggcgcga gcgtcaccac gaccacttcc cggagatgtg
     1321 gcgcagcctg ccgcgcagcg tccgcgacca cgacggcaac aaacgggtgg atgcgctgcg
     1381 tcgcaaggta gtgcagcagc gggccgagga ccagggggcg tcgggcgcac ccagctcctc
     1441 agcccccggc ggtggcggca tcgacacggc cgtggtcatc gccgtcgcgc ttgcggtggt
     1501 gttcgtggtg tgcgccatca tcgggttcgt gacagctgtc ggctggatgg tccactgacc
     1561 cgctgcgtcc actgacccgc tgcgtccact ggcgcggcat cctcggcctg tcggtgcccc
     1621 atgtcactct cgacccatgg acaacatcac ggacgtactg ctgctccgcg cggttcaggg
     1681 gtggtgcgac gagtgtgagg ccgagcaggt cctcatgccc gtgctcgacg aggcgccggg
     1741 cggcttctgc tgcgccgcct gcgacacggc ggtgttcgcg gggctggacg acctcgccgc
     1801 cgtcgctgcg ctgcgcatgt ccgcctgacc tgagtcaggc cccgctggag ccgagccatt
     1861 cgagcgcggc ggctgccgtc caggactgcg ccaggctgcc cagcggctcg ccggtgaacg
     1921 gctcgtagta ctcaccgaaa gtcagatccg acagctggtc cagcgatgca gtccgcagtg
     1981 cctcgtggag gtccgccgcc ccgtcccgag cacaggccca ccccaggagc aggttgagaa
     2041 acggccagac cggcccgcgc caatatttcc ggggccggaa gtccggactg accggagagg
     2101 tcgagggcgg cagcggaaac ctcagtctgg gctcgcccat ccagtccgac cccgcgagca
     2161 ggacccgctg atctcggagc agatcggcct cgccgcccgc gaccagggga gcgaagcccg
     2221 agaccgtctg cgtcgagatc cactccccgg ccagcacgtc gaagtcgcgg gccaggccgg
     2281 tcgatgggtc gatggtggag gccaccccag ccctgaaccg gcgggcgatc tccctcagct
     2341 cggcagcggc gtccggacgg gcgacctcgt cacccaggtc tgcgagaacg tcgctggccg
     2401 ccgcgaggat cgcggagaag aagacgtctc gaacgcggaa gtccacggcg tcgacgacca
     2461 gctggtcgtc atagtcgacc gaggccagct gctgcacgag ccacaggtac ttcgtgtact
     2521 cgaggtcatc cggccgttgg cccgggtcgg atacgtgcag ggtgtcgcgc ctgacgaacg
     2581 gctcgaccgg cccgggtcgc actcgtgcgt aggggccgtc ccaccgcggc gagttgtcga
     2641 acccggactc ccagccgtgg tgaatctcga ccaggcctac gcgctgcggg tctcgagcac
     2701 tggccagcca gcgatgccag gcgagccagc cgtcgaagct cccggcgagg aagtcctcgg
     2761 ccgcagcctg gtcggcgccg ccgttctccc gggcccgatc gacgatgtgg cgcagggcga
     2821 tggcgtgcac gggcggctga cagatgccac tggtgcgcac cgagaccgga cgagcggcgg
     2881 cggtgtcggt gccccaccgg tccggcccgg ggaagtagcc agtctcgtcg tcgctgaaga
     2941 cgatgtgcgg gatcatcccg gtcgtccact gcgcccccag cagggtttcc agctcgcgga
     3001 tcgcgcgggg cacgtcaacc cgggcgagcc cgatggcgac gaaggccgcg tcccagctcc
     3061 acaggtgcgg atagaggtgg ggagccgcgg tcgtcaggtg gcccaggtcg ttgtcccgca
     3121 acacctgcca ggccgcattc ctgatctgtg cgtcagtcgc agcgcgcgcc tgggtcatga
     3181 ggccaccgta tgccgggtcg ccggctgtca tcgatactgg ccctcctgcc cgccggcccc
     3241 gcggcggcca gcgccgttcc cgttcttgcc aagacgagca tcgacggtat gccggcgacg
     3301 gcgacgacgc tcggaccgct cacccagagg cccattcagt ccgggagttc gctcggcaga
     3361 accaccgcgt ccaccagggc gccgttgcgg atgacggtga cttccatccg ctgcccgatc
     3421 gcctcggcaa acaggcgctt ctgcagcgac tgagcgtcgc cgagcggagc gctgtcgatg
     3481 gcgagaacca ggtcgccggc gagcaggccg ctctgggcgg cagggctgtg ctcgacgacc
     3541 tcgacgactc gcaacgcccc gcgctgcccg taccgctcag cctgggccgg cgtcagccgt
     3601 gccggtgtgc tcaccaggcc gagatacgcg cgccgcaccc gcccgtcatg catcagcgcg
     3661 tggatgatcc ggtgggtcgt ggcgttgatt ggtaccgcca ggccgaggcc cactccggcc
     3721 acagccgtgt tgatcccgat gacgcggccg cggctgtcgg ccagcgcacc gcccgaattg
     3781 ccagggttga gcgcagcgtc ggtctggatg acgtcctcga tcagacgcgc agtcgtgcgg
     3841 gtccggaccg gcatactccg acccagggcg ctcaccacgc ccgccgtcac ggtgccggac
     3901 agtcccaggg ggttgccgac cgccaccacc agcgagccga cgaggagtga actggcgtcg
     3961 ccgtactcag gcggggctgg cacctcacgg tcggcacgga cgatggcgag gtccgacagc
     4021 gggtcacggc ccacgacctc gaagcgggcg accgtgccgt cggcgaactc cgcgctgcct
     4081 ccgctggcat cgccgacgac gtgcgcattg gtgaccaggt gggactctcc ggtcagaacc
     4141 acggccgacc ccgcggactc accgcggcgg gagcggatcc gtagtgcggc caccttcggc
     4201 gtcagccgcg ccgcgaccga ggtgacaatc gccgagtagg catccaaggc ggccgactct
     4261 gcggccgggt tcgtgctcat ggctgtgtca acgagcggca gtcgcgatga gattccgggt
     4321 tcaccaaggg tgaaacgacg cctgccattg ggttgctcga ccggctgacg ggaagccggg
     4381 aggcaacctg acacccatgc gaagcgggcc gcctgggaga ccaggtcagt cgggagcgtc
     4441 gacctccgag ggatcgtgct cgtcgtcggt ctccggtgga gcgatcacgg tttccggcac
     4501 ctctgggagg tccacgcctg gtgggatcgg cgcatcaggc gtgaccgggg ggaacgtggt
     4561 gccgtcctct tgcaggtgcg actggtaggt gtccatgtcg gctcctttgc ctcgactcct
     4621 aagtcccatg cccagcgagg cccgaagcaa acaatcaagc ccgtacgacc c
//
LOCUS       DASYFY010000022         2130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1630306, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000022 DASYFY010000000
VERSION     DASYFY010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1630306"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..324
                     /locus_tag="VGN19_00450"
     CDS             145..324
                     /locus_tag="VGN19_00450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194383.1"
                     /translation="MSSSAIHRTTHHPRVQRSPKGGWVWVCSCGSASCRTAREGLPWR
                     TALIGALLHSGTIAP"
     gene            complement(399..1355)
                     /locus_tag="VGN19_00455"
     CDS             complement(399..1355)
                     /locus_tag="VGN19_00455"
                     /inference="COORDINATES: protein motif:HMM:NF041045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEV7194384.1"
                     /translation="MTAAQRLGSSRASGGYLHDVMFWSGTDDFVHRTVAFVRAGLEAG
                     EPVMVALPAQRVAALRRSLGPDAAAVRFAEMESLGANPACIINAWVDFVEETGRRPSR
                     GVGEPLWPGRRSAEISECQLHEALLNTAIGAHTPLWLRCPYDADLLPDDVLDEARRTH
                     PWVADGGGRSAASDRYAGDDVGELGFATTLPEPTSRPVVRTVGPDSLRTLRDLVVYAA
                     QVSGASTERCKDLGLAVHELCVNTILHGGGSGVLRLWREPGDLVCEVRDSGQVTDPLT
                     GRMRPRDDEVDGRGLWMVNQLCDLVQLRSGASGTTVRVHTWL"
     gene            1543..>2130
                     /locus_tag="VGN19_00460"
     CDS             1543..>2130
                     /locus_tag="VGN19_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEV7194385.1"
                     /translation="MKVGIPSEIKNHEYRVAITPSGVHELVVQGHEVFIEREAGVGSS
                     ILDEDYTAAGARILDSADEVWATGDLILKVKEPVSSEYHRMREGQTLFTYLHLAADRA
                     LTEELVNRKVTAVAYETVELPDRSLPLLAPMSEVAGRLAPQVGAATLMRAQGGRGVLM
                     GGVSGVYAAKVVVIGAGVSGMNAAAIALGMQAEVLL"
BASE COUNT          322 a          750 c          741 g          317 t
ORIGIN      
        1 cgccccgcac gccaggtggc cccgtacgta gagcgcctgg ccgatcccct ggggactgag
       61 cacctgagga ggccctcccc cgttcggccc cgttcgggcg agtcttgcca cgtgggacgg
      121 gcgcgcggtt ctaccgtcgt agacgtgagc agttccgcga tccaccgcac gacacaccac
      181 ccccgggtgc agcgaagccc caagggcggc tgggtgtggg tgtgctcgtg tgggagtgcc
      241 tcctgtcgca ctgcgcgcga ggggctgccg tggcgcaccg ccctcatcgg ggcgctgctg
      301 cactccggca ccatcgcccc ctgatcctgt cccctggtcc cgcgttccgg acgcatccgt
      361 gcgccgagcc gccccgcccg tcgggcgccg cgatcacctt agagccaggt gtggacccgc
      421 accgtggtgc ccgaggcacc ggagcgcagc tggacgaggt cgcacagctg gttcaccatc
      481 cacaggccac ggccgtcgac ctcgtcgtcg cgcggtcgca tccgcccggt gagcgggtcg
      541 gtaacctgcc ccgagtccct gacctcgcac acgaggtcgc cgggctcccg ccacaagcgg
      601 agcacgccac tgcctccgcc gtgcaggatg gtgttgacgc agagctcgtg cacggccaac
      661 cccaggtcct tgcagcgttc cgtcgaggct ccactcacct gcgcggcata gaccacgagg
      721 tcccggagcg tgcgcaaaga gtcaggaccg accgtccgca ccacgggacg ggaggtcggc
      781 tcaggcaggg tcgtggcgaa gccgagctcg cccacgtcat cgccggcata ccggtcactg
      841 gcggcgctcc ggcccccacc gtcggcaacc caggggtggg tgcgacgggc ctcgtcgagg
      901 acgtcgtccg ggagcaggtc cgcgtcgtag ggacagcgca gccacagggg ggtatgggca
      961 ccgatggccg tgttcagcag ggcctcgtgc agctggcact cggagatctc ggcactgcgg
     1021 cgaccgggcc acaggggttc gcccacaccg cgcgacggac ggcgccctgt ctcctcgacg
     1081 aagtcgaccc aggcattgat gatgcaggcg gggttcgcac cgagtgactc catctcagca
     1141 aacctcaccg cggcggcgtc cggccccagg gagcgacgga gcgcggcgac gcgttgggcg
     1201 ggcagcgcga ccatgaccgg ctcgcccgcc tcgaggccag cacgcacgaa agccactgtt
     1261 ctgtggacga agtcgtcggt gccggaccag aacatgacgt cgtggaggta gcctcccgag
     1321 gcgcgcgacg acccgagtcg ctgtgctgcc gtcatgctca tacggactcc gaggcttgct
     1381 gaccggcccc tctgtctacc ggtccccggt caccatacgc ccgctgacct cccggtttag
     1441 gggttttggt cagccacttg gacgaatttc cgatgcggag gttggcagcg cgccgcaact
     1501 ccgtcattgt tcgaggacca cggcaaccac ggaggtccca cgatgaaggt cggcatcccc
     1561 agcgagatca agaaccacga gtatcgcgtg gcgatcacgc cttccggcgt acatgagctg
     1621 gtcgtccagg gccacgaggt gttcatcgag cgggaggcgg gtgtcgggtc ctccatcctc
     1681 gacgaggact acaccgcagc gggggcgagg atcctcgact cggcggacga ggtctgggcc
     1741 accggtgacc tgatcctcaa ggtcaaggag ccggtgtcct ccgagtacca ccggatgcgc
     1801 gagggccaga ccctcttcac gtacctgcac ctggcggcgg accgcgccct gaccgaggag
     1861 ctggtgaacc gcaaggtgac cgccgtggcg tacgagaccg tcgagctccc cgaccgctcg
     1921 ctgcctctgc tcgcgcccat gtccgaggtc gcaggccggc tggcgcccca ggtgggcgcg
     1981 gccacgctga tgcgcgccca aggtgggcgt ggcgtgctca tgggtggcgt gagtggcgtc
     2041 tatgcggcga aggtcgtcgt gatcggggcc ggggtctcgg ggatgaatgc cgccgccatc
     2101 gccctgggca tgcaggcgga ggtcctgctc
//
LOCUS       DASYFY010000023         3398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_947263, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000023 DASYFY010000000
VERSION     DASYFY010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3398
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947263"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3226
                     /locus_tag="VGN19_00465"
     CDS             <1..3226
                     /locus_tag="VGN19_00465"
                     /EC_number="1.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HEV7194386.1"
                     /translation="TGLNMYQEPGAPMNERRFKLYRRSPLSLTQVLPMFTHMGVEVVD
                     ERPYEIERSDGIRLWVYDFGLRVHGEKVWSGDGSRDRLRELFQDAVGAVWDGRAESDG
                     FNSLVLGAGLTWRQVVILRTVAKYLRQTGSTFSQEYVESALASNRQLAGTLVALFETR
                     FDPSRYAGEPGSAREAAQALMCEEIAKGLDEVRSLDHDRIIRAFLGVITATLRTNFYQ
                     VDGSGTPKSYVSIKLNPNKVPDLPAPRPQFEIFVYSPRVEGVHLRFGPVARGGLRWSD
                     RREDFRTEVLGLVKAQMVKNAVIVPTGSKGGFYAKQLPDPAVDRDAWLAEGIGSYKVF
                     ISGLLDVTDNREGSTIVPPQAVVRHDVDDSYLVVAADKGTATFSDIANGVAQSYGFWL
                     DDAFASGGSAGYDHKAMGITARGAWESVKRHFREMGVDTQTEDFTAVGIGDMSGDVFG
                     NGMLLSEHIRLVAAFDHRHIMVDPDPVAQTSFAERKRLFELPRSSWADYDASLLSAGG
                     GVFDRSLKSIAITDQMRSALGLADTTTSMTPAELMKAILQAPVDLLWNGGIGTYVKAV
                     AETSSDIGDRANDSIRVNGVQLRCKVVGEGGNLGLSQLGRIEASLHGVRVNTDAIDNS
                     AGVDTSDHEVNIKILLTSLVRSGDMTLKQRNSLLASMTDDVARQVLRDNYEQNVLLGN
                     ARAQEHPMLPVHQRLIHWLEERGDLDRALEFLPSDAEIERRAENGLGLKSPEFSVLVA
                     YAKLALKEDLLPSELPDDPWFQQTLADYFPPALRERFAQELAAHPLRREIITNSVVNS
                     MVNRGGITFAFRAMEETGATPQQIARAFVVAREIFDLPSFVREVEALDTIVPTEVQSQ
                     LYLEFRRLIDRSIRWFLTSRPSRLDVASEVARFGEVVRDFAPQIPSLLKGGELKRLQR
                     NAAGYEKRGVPDALAMRSACLLDQFSLLDIVDIATDTGEPPAEVAPLYFLLSERFGID
                     GMLTRVTNLPRDDRWDALARGALRDDLYAVLESLVRSVMDASTPGGQPSHRYEEWASA
                     NAESLTRARTALSGIERLDKPNIAALSVALRTLRSVIRAGAATS"
BASE COUNT          536 a         1150 c         1152 g          560 t
ORIGIN      
        1 caccgggctg aacatgtacc aggagcccgg ggcgccgatg aacgagcggc gtttcaagct
       61 ctaccgccgc agcccgctgt ccctgaccca ggtgctgccc atgttcaccc acatgggcgt
      121 cgaggtggtc gatgagcgtc cgtacgagat cgagcgcagt gacgggatcc ggctctgggt
      181 ctacgacttc ggccttcggg tccatggcga gaaggtgtgg agcggcgatg gcagtcgcga
      241 ccggctgcgc gagctcttcc aggatgccgt cggggcggtg tgggacggcc gagccgagag
      301 cgacgggttc aactctctgg tcctcggcgc cgggctcacc tggcgccagg tcgtcatcct
      361 gcggaccgtg gcgaagtacc tgcgccagac cgggtccacg ttcagccagg agtacgtcga
      421 gtcggcgctc gcgtcgaacc gacagctcgc cggcacgttg gtggccttgt tcgagactcg
      481 tttcgacccc agccggtatg ccggtgagcc gggttccgca cgcgaggcgg ctcaggcgct
      541 gatgtgcgag gagatcgcca aggggctcga cgaggtccgc agcctggacc acgaccggat
      601 catccgcgcg ttcctgggcg tcatcacggc gacactgcgg acgaacttct accaggtcga
      661 tggttcggga acgcccaagt cgtacgtctc gatcaagctg aaccccaaca aggtccccga
      721 cctgcccgca ccccgcccgc agttcgagat cttcgtgtac tcaccccggg tcgagggggt
      781 ccacctgcgg ttcgggccgg tcgcgcgagg ggggcttcgc tggtcggacc gccgggagga
      841 cttccggacc gaggtgctgg ggctggtcaa ggcacagatg gtcaagaacg ccgtcatcgt
      901 gccgaccggt tccaagggtg gcttctacgc caagcagcta ccggaccccg ctgtcgaccg
      961 tgacgcctgg ctggctgaag gcatcggctc gtacaaggtc ttcatctcgg gcctgctgga
     1021 cgtcaccgac aaccgtgagg gctcgaccat cgtgccgccg caggccgtgg tccgtcatga
     1081 cgtcgacgac tcgtacctgg tcgtcgcggc cgacaagggc acggcgacgt tctccgacat
     1141 cgcgaacggc gtggcccagt cgtatggctt ctggctggac gacgccttcg cctcgggcgg
     1201 ctcggcaggc tacgaccaca aggcgatggg gatcaccgcc cgcggggcgt gggagtcggt
     1261 caagcggcac ttccgtgaga tgggcgtgga cacccagacc gaggacttca cggcggtggg
     1321 gatcggggac atgtccggtg acgtgttcgg caacggcatg ctgctctcgg agcacatccg
     1381 gctggtcgcc gctttcgacc accgccacat catggtcgac cccgacccgg tcgcgcagac
     1441 gagcttcgcc gagcgcaaac gcctcttcga gctgcctcgc tcctcgtggg ccgactacga
     1501 cgcctcactg ctcagcgccg ggggaggcgt cttcgaccgc tcgctgaagt ccatcgcgat
     1561 caccgaccag atgcgcagtg cgctcggact tgccgacacc accacctcga tgacccccgc
     1621 ggagctgatg aaggcgatcc tccaggcccc ggtcgacctg ctctggaacg gtggcatcgg
     1681 cacctatgtc aaggccgtgg ccgagaccag ctccgacatc ggtgaccgag ccaacgactc
     1741 gatccgggtc aacggcgtgc agctgcgatg caaggtggtc ggggagggag gcaacctcgg
     1801 gctgtcgcag ctgggccgca tcgaggcgtc gctgcacggg gtgcgcgtca acaccgacgc
     1861 catcgacaac tcggcggggg tcgacacctc tgaccatgag gtcaacatca agatcctgtt
     1921 gacgtcgctg gtccgctctg gggacatgac cctgaagcag cgcaactcgc tgctcgcttc
     1981 catgaccgac gacgtggccc ggcaggtgct gcgcgacaac tacgagcaga acgtcctgct
     2041 cggcaatgcg cgggcgcagg agcacccgat gctgcccgtg caccagcgcc tgatccattg
     2101 gctcgaggag cggggcgacc tcgaccgggc cctggagttc ctcccctccg acgccgagat
     2161 cgaacggcgt gcggagaacg gcctgggtct gaagtccccg gagttctcgg tcctggtggc
     2221 gtacgccaag ctcgcgctga aggaagacct gctgccctcc gagctgcccg acgacccctg
     2281 gttccagcag acgctggcgg actacttccc cccggcattg cgggagcggt tcgctcaaga
     2341 gctggccgct cacccgctgc gccgcgagat catcacgaac tcggtggtga actcgatggt
     2401 caaccgcggc gggatcacgt tcgccttccg ggcgatggag gagacgggcg ccacgcccca
     2461 gcagatcgcg cgggccttcg tggtcgcgcg cgagatcttc gacctgccca gcttcgtgcg
     2521 tgaagtcgag gctctggaca cgatcgtccc gaccgaggtc cagagccagc tctacctcga
     2581 gttccgacgg ctcatcgacc ggtccatccg ctggttcctc acctcccggc cgtcccggct
     2641 cgacgttgcc agcgaggtgg cccggttcgg cgaggtggtg cgagacttcg ccccgcagat
     2701 cccgtccctg ctcaagggcg gcgagctgaa gcgcttgcag cgcaacgccg ctggctacga
     2761 gaagcgcggt gtcccggacg cgctggcgat gcggtccgcg tgcctgctcg accagttctc
     2821 gctcctcgac atcgtggaca tcgcgacgga cacgggcgag ccgccggccg aggtcgcccc
     2881 gctgtacttc ctgctgtccg agcgcttcgg catcgacggg atgctcaccc gggtgaccaa
     2941 cctgccgcgg gacgaccgtt gggacgcctt ggcccgaggc gcgctgcgcg atgacctgta
     3001 tgccgtgctc gaaagtctgg tgcgctccgt catggatgcc tcgacgccgg ggggtcagcc
     3061 gtcgcatcgc tatgaggagt gggcctcggc caacgccgag tccttgactc gggcgcggac
     3121 cgccttgtca ggcatcgaac gcctcgacaa gccgaacatc gccgccctgt ccgttgctct
     3181 gcgcacgctt cgttcagtca tccgtgctgg ggccgccacc tcgtgagcag gttgtgagca
     3241 ccgtcgaccg gtcggcgaga gtggttgcgc tgcaacgctt cccggccaag tccatgggtg
     3301 gcgagtcgct cgaccacctc gagatcggtc cgaccggcgt cgtgggcgat cgggaatggg
     3361 ccgtctacgg cgccgatggc aagctcggga gcggcaag
//
LOCUS       DASYFY010000024         2313 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_474048, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000024 DASYFY010000000
VERSION     DASYFY010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474048"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1468
                     /locus_tag="VGN19_00470"
     CDS             <1..1468
                     /locus_tag="VGN19_00470"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HEV7194387.1"
                     /translation="VGTVIFDPDGEYYWPDDKGRPGLCDVPALQDRLVVFTDKEGPSE
                     FYRSFVVDKVRLDIRELEAAKVISLVIPAERQDHQNIAKLKQLRPPEWSKLVDEVWLG
                     KGGTDLKHFCQALQLDPRQQENEALAARSNMVRVVAALHDPSSQLLRALIRALSDGKL
                     CVVDISQMRGAQGLALAGVILQRIFEHNQGEFTKRQSRSVPVIAVVEEAQSLLGSSAS
                     QGEGPFISWVKEGRKYDLGAVLVTQQPGSIPAEILSQGDNWFIFHLLAEGDLRALQRA
                     NAHFSDDLLSSLLNEPLPGHGVFWSSVSETPYPIPTRALLFEKAFEPADPLYDRPGVD
                     CYASGLKSQLASALDEAVAASGGTRVTLNKTVDATQTFKYAAIRKLAQDARFQDAVRS
                     DRGIKWGFVQHLLADNLPGTFGQGHEERFDWVYRHGLVRHALAEILGENGWRTGTRDG
                     SQWVFVTDRAKPRSTVPEPPADRSPDDDLGPPPGEPPF"
     gene            1521..>2313
                     /locus_tag="VGN19_00475"
     CDS             1521..>2313
                     /locus_tag="VGN19_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEV7194388.1"
                     /translation="MKALVYYGPGQKAWEDVPDAAISEPTDVVVKVDTTTICGTDLHI
                     LHGDVPAVTDGRILGHEAVGTVTEVGDAVKGFSVGDRVLVPAITKCGRCEYCQRNMPS
                     HCQTVGGIGWIFGHLIDGTQAESVRVPYADTSLYAVPGNVTNEQAIFLADSLPTGYEV
                     GVLAGQVRPGDTVAVVGAGAVGLSAILTTGLWGASRVIAIDTNKFRLDKARDFGATDT
                     VEAGDNTTADVLALTGGVGVDVSIEAVGFPETLLTAASLVRPGGTI"
BASE COUNT          403 a          804 c          746 g          360 t
ORIGIN      
        1 cgtcggcacg gtcatcttcg atcccgatgg ggagtactac tggccagacg acaagggcag
       61 gccgggattg tgtgacgttc ccgcgctcca ggaccggctg gtcgttttca ccgacaagga
      121 aggaccaagc gagttctacc ggtcttttgt cgtcgacaag gtgcggctcg acatcaggga
      181 gcttgaggcc gcgaaggtaa tttccctggt gataccggcc gaacgccagg atcaccagaa
      241 catcgccaag ctcaagcagc tccggcctcc agagtggagc aagctggtcg acgaggtctg
      301 gctggggaag ggcggcaccg atctcaagca cttctgccag gccctgcagc tcgaccccag
      361 gcagcaggag aacgaggcgc tggccgcccg gtccaacatg gtccgagtgg tcgccgcgct
      421 acatgacccg tccagccagc tgctgcgcgc gctcatcagg gcgctgtcgg acggcaagct
      481 gtgcgtggtg gacatctcgc agatgcgcgg cgcgcagggg ctcgcgctgg ccggcgtgat
      541 cttgcagcgg atcttcgagc acaaccaggg tgagttcacc aagaggcaat cacggagcgt
      601 cccggtgata gccgtcgtcg aggaggccca atcgctcctg ggctcgtcgg ccagccaggg
      661 agaggggccc tttatttcct gggtgaagga agggcgcaag tatgacctcg gcgcggtcct
      721 ggtgacccag cagccaggga gcatcccggc cgagatcttg tcccagggcg acaactggtt
      781 catcttccac ctgctcgccg agggcgacct gcgcgccctg caaagggcga acgcccactt
      841 ctcggacgat ctgttgtcgt ccttgctcaa cgagcccctt cccgggcacg gggtcttctg
      901 gtcgagcgtc agcgagacgc cctatcccat tccgacccgg gcgctgctct tcgagaaggc
      961 cttcgagccg gctgacccgc tctacgaccg cccgggcgtc gactgctacg catccggtct
     1021 gaagagtcag ctcgccagcg cactcgacga ggcggtcgcc gcatccggcg gaacgcgcgt
     1081 cacgctcaac aagaccgttg acgcgacgca gaccttcaag tacgccgcca tccgcaagct
     1141 ggctcaggac gccagattcc aggatgccgt gcgcagtgat cgcggcatca aatggggatt
     1201 cgtgcagcac ctgctggccg ataatctgcc tgggaccttc ggccagggac acgaagagcg
     1261 tttcgactgg gtctaccgcc acgggctcgt caggcacgcc ctggccgaga tcctcggtga
     1321 aaacggctgg cgcaccggaa cgcgggacgg atcccaatgg gtcttcgtga ccgaccgcgc
     1381 caagccacgt tcgaccgtcc cggagcctcc cgccgaccgt tcacccgacg acgacctcgg
     1441 cccgccgccc ggggagccac cgttctgata gtccaatttt gaaacagccg aacgcgcccg
     1501 gggtgactag cgtcagctta atgaaagccc tcgtatacta cggaccaggc cagaaggcgt
     1561 gggaagacgt cccggacgcc gccatctccg aacccaccga tgtcgtggtc aaggtcgaca
     1621 ccaccacgat ctgcggcacc gacctgcaca tcctgcacgg cgacgtgccc gccgtcaccg
     1681 acggccgcat cctcggccac gaggcggtcg gcaccgtcac cgaggtcggc gacgcggtca
     1741 aggggttcag cgtcggcgac cgcgtgctcg tcccggccat taccaagtgc gggcgctgtg
     1801 agtactgcca gcggaacatg ccctcgcact gccagacggt cggcggcatc ggctggatct
     1861 tcggtcacct gatcgacggc acccaggccg agtccgtccg cgtcccgtac gccgacacct
     1921 cgctgtacgc ggtgcccggc aacgtcacca acgagcaggc catcttcctg gccgactcgc
     1981 tgccgaccgg ctacgaggtg ggcgtactcg ccggccaggt ccgccccggc gacaccgtcg
     2041 cggtggtcgg cgccggcgcg gtgggcctgt ccgccatcct gaccaccggc ctatggggcg
     2101 cctcccgggt catcgcgatc gacacgaaca agttccggct ggacaaggcg cgggacttcg
     2161 gcgctaccga caccgtggag gccggagaca acaccaccgc cgacgtcctg gccctgaccg
     2221 gcggcgtcgg cgtcgacgtc tcgatcgagg cggtcggctt ccccgagacc ctactgacgg
     2281 ccgcgtccct ggtccgcccg ggcggcacca tcg
//
LOCUS       DASYFY010000025         1671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_106203, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000025 DASYFY010000000
VERSION     DASYFY010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106203"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VGN19_00480"
     CDS             complement(<1..180)
                     /locus_tag="VGN19_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7194389.1"
                     /translation="MPVRVFLLDDHEIVRRGLRELLEATADFEVIGESGSAQEAARRI
                     PALRPDVAVFDVRLPD"
     gene            complement(245..>1671)
                     /locus_tag="VGN19_00485"
     CDS             complement(245..>1671)
                     /locus_tag="VGN19_00485"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GAF domain-containing sensor histidine kinase"
                     /protein_id="HEV7194390.1"
                     /translation="ILGLLIRDPRHQRLADISAHPDSFGFPPNHPPMRSFLGTPIRIR
                     DEVFGNLYLAERQGGEEFSEADEAVVVALAAAAGVAIDNARLFERSQRQTELAQMISE
                     LTQSLLESEAEESALAPMAERLCGLTGAAVCFVVLRDEQGSPWVRAIGHGDGVAAGAA
                     EPHGRWPDLQAAHWAQVLEVGQELLLLPSSTGGTTAEVMSDLALAGGLPEPGPLAVVP
                     ILAGAGDLGHLLMMWESGSGDVASQSMSGLSAFSQQAGLGLIAARAQHDKAMVAMLED
                     RNRIARDMHDHVIQRLFATGLSLQAAERLAVHPVVQTRISEAVDSLDEAIKVIRSTIF
                     ELHTTATEGTAAQLLEELVRSFSPSLGYEATLEVDADLAGLDDSLLADLTAVVREGLS
                     NIARHARSSAAQVLVRRDAARLVVVVADNGRGLDAGGRRSGLANLQQRAAARSGTFEV
                     EPGDPSGTRLTWTVPCRDLRTWLP"
BASE COUNT          260 a          622 c          561 g          228 t
ORIGIN      
        1 atcggggagc ctgacgtcga agacggcgac atcgggccgc agcgccggga tccggcgcgc
       61 ggcctcctgg gccgagcccg actccccgat cacctcgaag tccgcagtgg cctcgagcag
      121 ctcgcgcagg cctcgacgaa cgatctcgtg gtcatcgagc aggaacaccc gaaccggcac
      181 tacccctcac ccgcctctga cttgcccatg tggacgaccg cgaaccaacc ctacgcagcc
      241 acgttcacgg cagccaagta cgaaggtccc ggcagggcac cgtccacgtc agccgggtcc
      301 ccgacgggtc gccgggctcg acctcgaacg tgcccgagcg tgccgcggcc cgctgctgga
      361 ggttcgccag gccgctgcgc cggcccccgg catccaggcc gcgcccgttg tccgcgacga
      421 ccacgacgag gcgtgccgcg tcgcgccgca ccagcacctg cgccgcgctc gagcgcgcat
      481 gacgggcaat gttcgacaga ccctcgcgga cgacggcggt caggtcggcg agcagcgagt
      541 cgtccagacc ggccaggtct gcgtccacct ccagggtggc ctcgtagccc aggctcggcg
      601 agaacgacct gaccagctcc tcgagcagct gcgccgcagt cccttcggtc gccgtcgtgt
      661 gcagctcgaa gatcgtggac cggatgacct tgatcgcctc gtcgaggctg tccaccgcct
      721 ccgagatgcg cgtctggacg acgggatgaa ccgccagtcg ctctgctgcc tgcagggaca
      781 gtcccgtggc gaagaggcgc tggatgacgt ggtcgtgcat gtcccgcgcg atccggttac
      841 ggtcctcgag catggcgacc atggccttgt cgtgctgagc cctggcagcg atcaggccga
      901 ggccggcctg ctgggagaag gccgacaggc cgctcatcga ctgcgaggcc acgtcaccgc
      961 tgccgctctc ccacatcatg agcaggtggc ccaggtcccc ggcgcccgcc aggatgggta
     1021 ccacggcaag tggcccgggc tccggcagcc caccggccaa cgccaggtcc gacatcacct
     1081 cggccgtcgt accgccggtg gagctgggca gcaggagcag ctcctgcccc acctcgagga
     1141 cctgcgccca gtgcgccgcc tgaaggtccg gccagcgacc gtgcggctca gcggcgccgg
     1201 cggccacgcc gtcaccatgc cctatcgcgc gaacccaggg gctgccctgc tcgtcgcgga
     1261 gcaccacgaa gcacacggcc gccccggtca gcccgcacag tcgctcggcc atcggcgcga
     1321 gcgctgactc ctcggcctcg ctctcgagga ggctctgagt gagctcactg atcatctgcg
     1381 cgagctccgt ctgccgctgc gagcgctcga acaggcgcgc gttgtcgatg gccactccag
     1441 cggctgccgc gagggcgacg accacggcct cgtcggcctc cgagaactcc tcccccccct
     1501 gccgttccgc cagatagagg ttgccgaaga cctcgtcccg gatccgaatg ggcgtgccca
     1561 ggaagctgcg catgggtgga tggttcgggg ggaagccgaa cgagtcgggg tgggcactga
     1621 tgtccgcgag acgctgatgg cgcgggtcgc ggatcagcag accgaggatc c
//
LOCUS       DASYFY010000026         3249 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_53611, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000026 DASYFY010000000
VERSION     DASYFY010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53611"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VGN19_00490"
     CDS             <1..581
                     /locus_tag="VGN19_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7194391.1"
                     /translation="PWSIVLVVAMFAMGVLTTTRRVEAPGSWPAAAIAMAAGIIPVLA
                     VVLLTGTIPLTGIAIIPVAGIIVGNTMTAHTLVGRRAFAALRDEHAQYEACLSLGLLP
                     GQAIEEIIHRRAPEALLPGLDQVKTTGVVTLPGAFIGVMLGGGSPVQAATAQVLVLFG
                     IMAAQTVTVAVAERLIAARRLAPHDLALALVD"
     gene            complement(594..1805)
                     /gene="trmD"
                     /locus_tag="VGN19_00495"
     CDS             complement(594..1805)
                     /gene="trmD"
                     /locus_tag="VGN19_00495"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEV7194392.1"
                     /translation="MRLDVVTIFPEYLAPLELSLIGKARRDGLLDVRVHNLREFTHDR
                     HRSVDDTPFGGGAGMVMKPEPWAEALAHVAGSDPAGGRPHVVVPGPGGMPFTQAMARS
                     LASEPWLVFACGRYEGLDERVYEHASEDLGLEVSVVSLGDYVLNGGEVAVLAMVEAIA
                     RLVPGVIGNAESLVEESHEDGLLEYPVYTKPAVWQSTTGRTREVPAVLLSGDHQAIAR
                     WRHQQRLARTAARRPDLLHPSQAIEASQEMAGLEVALATAADAPELLTLSRACWVTEA
                     RANDTLSIPPLVEGLEEVTAGIASWTTWTIRSAGRLVGSVRARLSPDDPTLWQIGRLM
                     VAPDLQGRGLGRALLTYAEAAAPPGTAAYWLNTGERSDRNQRIYRKAGYRIRPGQGSF
                     PGTVDLVKPRR"
     gene            complement(1818..2360)
                     /gene="rimM"
                     /locus_tag="VGN19_00500"
     CDS             complement(1818..2360)
                     /gene="rimM"
                     /locus_tag="VGN19_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010145120.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEV7194393.1"
                     /translation="MAVDNELLVARIGKPHGLHGEVTVQLHTDDPERRFVVGAMLTTQ
                     AAAGSGVPRVLTVQSTRVHQGVWLLGFEGIPDRTGAESLRDTRLFADVTSDEPSEDQD
                     AWYEDDLVGLAVTTRDGTVVGEVVGLQSRPAQDLLVVRLTGGGEALVPFVEQIVPEVD
                     LEGRRVVIDPPAGLLELNAD"
     gene            complement(2464..2706)
                     /locus_tag="VGN19_00505"
     CDS             complement(2464..2706)
                     /locus_tag="VGN19_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018384758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEV7194394.1"
                     /translation="MLEEALEHLVKGIVDHKDEVVVRRKELRRGEVLEVRVHPEDLGR
                     VIGRSGRTASALRTVMGALAGGQSVRVDIVDTDKVR"
     gene            complement(2709..3248)
                     /gene="rpsP"
                     /locus_tag="VGN19_00510"
     CDS             complement(2709..3248)
                     /gene="rpsP"
                     /locus_tag="VGN19_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEV7194395.1"
                     /translation="MKRMGKIRAPFYRVVIMDSRAKRDGRAIEEIGKYHPTEEPSVID
                     INSDRAQYWLGQGAQPTEAVEALLKVTGDWQKFKGEPGAEGTLKVKAAKPSKKELYDA
                     AIAAAGKADAGTDGATTPKKRAAKKADEAPVAEAAAKKADETPVAEAPVETPVAEAPA
                     EAPAAEAPATEEATDADKA"
BASE COUNT          473 a         1165 c         1094 g          517 t
ORIGIN      
        1 tgccgtggtc gatcgtgctg gtcgtggcga tgttcgcgat gggagtcctg accaccactc
       61 gtcgggtcga ggcacccggg tcgtggccgg ccgcggcgat cgcgatggcc gcggggatca
      121 tcccggtgct cgccgtggtg ctgctgaccg gaaccatccc cctgacgggc atcgccatca
      181 tcccggtggc cggaatcatc gtcggcaaca ccatgaccgc acacacgctg gtgggtcgtc
      241 gagcgttcgc ggcgctaagg gacgagcacg cgcagtacga ggcttgcctg tccctcggcc
      301 tgctgcccgg tcaggccatc gaggagatca tccatcgacg ggccccggag gcgctgctcc
      361 caggcctgga ccaggtcaaa accaccggtg tcgtgacgct gccaggtgcg ttcatcggcg
      421 tcatgctcgg cggagggagc cccgtccagg ctgccaccgc ccaggtactc gtgctcttcg
      481 gcatcatggc cgcccagacc gtgacggtag ccgtggccga acggctcatc gccgcgcgac
      541 gcctggcacc gcacgacctc gcactggcct tggtggactg agcacagccg gcactagcgc
      601 cgtggtttga ccaggtccac ggtccccggg aagctcccct gcccgggacg gatccggtac
      661 cccgccttgc ggtagatgcg ttggttgcga tcgctgcgtt ccccggtgtt gagccagtat
      721 gccgctgtgc ctggcggcgc cgccgcctcg gcataggtga gcagggcccg gccgagacca
      781 cgcccttgga ggtccggggc caccatcagg cgcccgatct gccagagcgt cgggtcatca
      841 ggcgacagtc tggcgcgcac cgaccccacg agccgacccg ctgacctgat cgtccaggta
      901 gtccagctgg caatccctgc cgtcacctcc tcgaggcctt cgaccagcgg cgggatcgac
      961 agggtgtcgt tggcgcgcgc ctccgtcacc cagcacgccc ggctcaaggt caacagctca
     1021 ggcgcatcgg ccgcggtcgc cagcgcgacc tcgagcccgg ccatctcctg ggaggcctcg
     1081 atggcctggg aggggtgcaa caggtccggt ctgcgagccg cggtccgcgc caggcgctgc
     1141 tgatggcgcc accgggcgat ggcctggtgg tccccggaca acagcacggc gggcacctcc
     1201 cgcgtcctgc cggtcgtgct ctgccagaca gcgggcttgg tgtagacggg gtactccagc
     1261 aggccgtcct cgtgcgactc ctcgaccagg gactcggcgt tgccgatgac tccaggcacc
     1321 agacgcgcga tggcttccac catggccagg actgcgacct caccgccgtt cagcacgtag
     1381 tccccgagcg agaccaccga aacctcgaga ccgaggtcct ccgacgcgtg ttcgtacacg
     1441 cgctcgtcca ggccctcgta gcgcccacag gcgaacacca gccagggctc gctcgcgagg
     1501 ctgcgcgcca tcgcctgggt gaacggcata ccccccgggc ccggaaccac cacgtgcgga
     1561 cggccgcccg ccgggtcgga accagccaca tgagccagcg cctcggccca gggttcgggc
     1621 ttcatcacca tgcccgcacc cccaccgaag ggggtgtcgt caaccgaacg atgccggtcg
     1681 tgggtgaact ctcgaaggtt gtgcacccgg acgtcgagga ggccgtcgcg ccgagccttg
     1741 ccgatcagcg acagctcaag cggcgcgagg tactcgggga agatggtcac gacgtcgagt
     1801 cgcatcggcg cgtcccgtca gtccgcgttg agctcgagca acccggcagg agggtcgatc
     1861 acgacccggc gcccctcgag gtccacctcg ggcacgatct gctcgacgaa gggcacgagt
     1921 gcttccccgc caccggtgag acgcactacg agcaggtcct gcgcgggccg gctctgcaga
     1981 ccgacgacct ccccgacgac tgtcccgtcg cgcgtcgtca cggcaaggcc gaccaggtcg
     2041 tcctcgtacc acgcgtcctg atcctcggag ggctcgtcgg aggtgacgtc ggcaaacagc
     2101 cgggtgtctc gcagcgactc ggcgccggtg cggtcgggga tcccctcgaa ccccagcagc
     2161 cagacgccct ggtgcacacg ggtgctctgc acggtgagca cccgcggaac tcccgacccc
     2221 gcggcggcct gagtggtgag catcgcgccc accacgaagc ggcgctccgg gtcgtcggtg
     2281 tgcagctgga cggtcacctc accatgcagg ccgtgtggct tgccgatccg tgccacgagg
     2341 agctcgttgt cgacggccat gggctgatcc tctcagtggt cggacatgac tgacagcact
     2401 cagggccgcc agacgcgatg agggccgccg ggacttcccg gcggccctca tcgatgtgtg
     2461 ggttcagcgc accttgtccg tgtcgacgat gtcgacccgg acgctctggc caccggccag
     2521 ggcgcccatc acggtgcgta gcgcgctcgc ggtacggccg gagcggccga tgacgcgccc
     2581 gaggtcctcg gggtggaccc gaacctccag cacctcaccg cggcgcagct ccttgcgtcg
     2641 cacgacaacc tcgtccttgt ggtcgacgat gcccttgacg aggtgctcga gcgcctcttc
     2701 cagcacggtc aggccttgtc cgcgtcggtt gcctcttcgg tggccggagc ctcagcagcc
     2761 ggcgcttcgg caggagcctc agcgacagga gtctcgacgg gagcctcagc gacaggagtc
     2821 tcgtcagcct tcttggcggc agcctcagcg acaggagcct cgtcagcctt cttggcggcg
     2881 cgcttcttcg gggtggtggc cccgtccgtg cccgcgtcgg ccttgccggc tgcggcaatg
     2941 gcggcgtcgt aaagctcctt cttggaaggc ttcgcggcct tcaccttcag ggtcccctcg
     3001 gcgccgggct cacccttgaa cttctgccag tcgccggtca ccttgagcag ggcctcgacg
     3061 gcctcggtcg gctgcgcgcc ctggccgagc cagtactgcg cgcggtcgga gttgatgtcg
     3121 atgaccgagg gctcctcggt ggggtggtac ttgccgatct cctcgatggc ccggccatcg
     3181 cgcttggcgc gcgagtccat gatgacgacg cggtagaacg gtgcacggat cttgcccatg
     3241 cgcttcaga
//
LOCUS       DASYFY010000027         2909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1525298, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000027 DASYFY010000000
VERSION     DASYFY010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1525298"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VGN19_00515"
     CDS             <1..219
                     /locus_tag="VGN19_00515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose-binding protein"
                     /protein_id="HEV7194396.1"
                     /translation="EAEAAAKAALALANKQTPASTVSTQGVPSTILTPIAVTKSTIKD
                     TIVKDGVYKVTDICSGSFAAACTKAGLS"
     gene            339..1142
                     /locus_tag="VGN19_00520"
     CDS             339..1142
                     /locus_tag="VGN19_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010205353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194397.1"
                     /translation="MTATLSPSTTAALALTGVSKRFGAVQALKDIEFDVHAGEVVALV
                     GDNGAGKSTLVKTIAGVYTPDAGTITFDGTPANVNSPAEAQHLGIATVFQDLALCDNL
                     DVVANLFLGRELYRGRALDEVSMEHESWRLLRQLSAKIPSVRIPVASLSGGQRQTVAI
                     ARSLLGHPKVVMLDEPTAALGVAQTAEVLNLVERLRENGLGVILISHNMSDVMAVADR
                     VSVMRLGRNNGVFNVSQTTSQEIIAAITGATNNAVSQRASRRGVQEEQS"
     gene            1139..2419
                     /locus_tag="VGN19_00525"
     CDS             1139..2419
                     /locus_tag="VGN19_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEV7194398.1"
                     /translation="MTGSTPTPETASQTDVTAALPSDLQDERLIASQGVGGFLRVFVS
                     RLRSGDLGSLPVVVGLVVIWGVFQSQNNAFLSSRNLVNLTQQSAATGTIALGIVLVLL
                     LGEIDLSVGSISGLSAAILAVGFVNHGWSLPLAILASLVAGALVGSIYGVLYTRFGVP
                     SFVITLAGLLGFLGLQLKVLGEEGSINIPFDSGLVKFAQASFLSTAESYLLVALVVLV
                     YAATRLRANQRRSAAGLSTTPVVTLAIRSVAVAVVLLIPVYVLNLDRGVSQMFLLFVL
                     LVVIFDFVIRRTRWGRSVLAIGGNVEAARRAGINVRRIYVSVFVCTSTLAALGGLLAA
                     GRLAAANQSSGGGDVNLNAIAAAVIGGTSLFGGRGTAYSALLGILVIQSISNGLSLVN
                     LGSPERYMITGGVLLLAVIVDSLSRRSRAAHGRA"
     gene            complement(2459..>2909)
                     /locus_tag="VGN19_00530"
     CDS             complement(2459..>2909)
                     /locus_tag="VGN19_00530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEV7194399.1"
                     /translation="QAVPDIVVAHEPAAAIDVAKAGIRINGHMHRAELDGSRVGVGTF
                     TGGGPFSHFIAGPHDELTGQPSAFDVATFGQDCRLTSLTRYQFRNVIEGRPAYDDVTL
                     VNGSRIESEAPPSTSAATTPAGAATTPPRSCSTTMDTTTEHVPADSP"
BASE COUNT          427 a         1024 c          962 g          496 t
ORIGIN      
        1 gaggccgagg ctgctgccaa ggccgcgctc gcgctggcca acaagcagac gccggcttcg
       61 accgtcagca cccagggcgt gccctcgacg atcctgaccc cgatcgccgt caccaagtcc
      121 acgatcaagg acaccatcgt caaggacggc gtgtacaagg tgaccgatat ctgctctggc
      181 tctttcgccg ccgcgtgcac caaggcaggc ttgagctgac gcactgtccg cgggcgggag
      241 gacacccgtt ctcccgcccg cggaaccacc cggcatacgc tccacaaccg ctccataacg
      301 gcaccacatg ggccggcccg aggaagtgaa ggacgacgat gaccgccacc ctctccccgt
      361 cgacgaccgc cgcgctggca ctcacaggtg tctcgaaacg cttcggcgcg gtgcaggccc
      421 tcaaggacat cgagttcgac gtccatgcgg gggaggtggt ggcgctggtc ggggacaacg
      481 gcgccggcaa gtcgacgttg gtcaagacca tcgcgggggt gtacaccccc gacgccggca
      541 cgatcacctt cgacggcacc ccggccaacg tcaacagtcc ggccgaggcc cagcacctcg
      601 gcatcgcgac ggtgttccag gacctcgccc tgtgcgacaa cctcgacgtc gtcgccaacc
      661 tgttcctcgg ccgcgagctc tatcggggcc gagcactcga cgaggtgagt atggagcatg
      721 agtcgtggcg gctgctgcgc cagctcagcg ccaagatccc ctcggtgcgg atcccggtcg
      781 ccagcctctc aggggggcag cggcagaccg tcgcgatcgc gcgctcgctc ctcgggcatc
      841 ccaaggtcgt catgctggac gagccgactg ccgccctggg cgtggcccag accgcggagg
      901 tgctcaacct cgtcgagcgc ctgcgtgaga acggcctcgg cgtcatcctc atcagccaca
      961 acatgtcaga tgtcatggca gtggccgacc gggtcagcgt catgcggctc ggtcgcaaca
     1021 acggcgtctt caacgtcagc cagaccacca gccaggagat catcgcggcc atcacgggcg
     1081 cgacgaacaa tgccgtctcg caacgggctt cccgtcgcgg cgtccaggag gagcagtcat
     1141 gaccgggtcc accccgaccc cggagacggc gtcgcagacc gacgtcaccg cggccctgcc
     1201 atccgacctg caggacgagc ggctgatcgc ctctcaggga gtcggcggct tccttcgggt
     1261 cttcgtctcg cggctgcgca gcggagacct cgggtcgctg ccggtcgtcg tcgggctggt
     1321 cgtcatctgg ggggtgttcc agtcccagaa caacgccttc ctgtccagcc gcaacctcgt
     1381 caacctcacc cagcagagcg ccgcgaccgg gaccatcgcc ctcggcatcg tgctggtcct
     1441 gctgctcggc gagatcgacc tgtccgtggg ctcgatcagc ggactttccg cggcgatcct
     1501 cgccgtgggc ttcgtcaacc atggctggtc gctgcccttg gcgatcctgg cctcgttggt
     1561 ggctggcgcc ctggtcggct cgatctacgg cgtgctctac acccgcttcg gcgtcccgag
     1621 cttcgtcatc accctggcgg gactgctcgg cttcctcggc ctgcagctca aggtgctcgg
     1681 cgaagaaggg tccatcaaca tccccttcga ctccggcctg gtgaagttcg ctcaggccag
     1741 cttcctgagc acggcggagt cctacctcct ggtggccctc gtcgttctcg tgtatgcggc
     1801 gacgcggctg cgcgccaacc agcggcgcag cgccgcggga ctgtcgacca ccccggtggt
     1861 caccctggct attcggtcag tcgccgtggc ggtcgtcctg ctcatcccgg tgtacgtgct
     1921 caacctcgac cggggtgtct cgcagatgtt cctactcttc gtgctgctgg tcgtgatctt
     1981 cgacttcgtc attcgtcgga cccgttgggg gcgttcggtt ctcgcgatcg gcgggaacgt
     2041 cgaggccgcg cggcgagcgg gtatcaacgt ccggcgcatc tacgtcagcg tcttcgtgtg
     2101 cacctccacc cttgctgctc tcggcggcct gctcgcggcg ggtcggctcg ctgcggcaaa
     2161 ccagagcagc ggtggtggcg acgtcaacct caacgccatc gcggctgccg tcatcggcgg
     2221 tacgagcctg ttcggagggc gtggcacggc ctactccgcg ctcctgggca tcctggtgat
     2281 ccagtccatc tccaacgggc tcagcctggt caacctgggc tcgccggagc gctacatgat
     2341 cactggtggt gtgctcctgc tggcggtcat cgtcgactcg ctcagccgtc gcagccgggc
     2401 ggctcacgga cgagcctgag gacgagcccg aggcggccgc cgccgtccgt cgctgcgctc
     2461 acggcgagtc ggcgggcaca tgctccgtag tggtatccat cgtggtggaa cagctgcgtg
     2521 gcggggtcgt cgccgcaccg gcaggagtgg tggcggcgct ggtcgagggc ggcgcctccg
     2581 actcgatccg tgacccgttg accagggtca cgtcgtcgta ggcgggtcgg ccctcgatga
     2641 cgttgcggaa ctggtagcga gtcagcgacg tcagccggca gtcctgcccg aaggtcgcca
     2701 cgtcgaacgc cgacggctgc ccggtcagct catcgtgagg gccggcaatg aagtggctga
     2761 aggggccgcc cccggtgaac gtcccgacgc cgacccggga gccgtcgagc tcggcgcggt
     2821 gcatgtgtcc gttgatccgg atgccggctt tggctacgtc gatcgccgca gccggctcgt
     2881 gggccaccac gatgtcgggg acggcctgg
//
LOCUS       DASYFY010000028         1582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_999794, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000028 DASYFY010000000
VERSION     DASYFY010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_999794"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..879)
                     /locus_tag="VGN19_00535"
     CDS             complement(<1..879)
                     /locus_tag="VGN19_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system AbiEi family
                     antitoxin domain-containing protein"
                     /protein_id="HEV7194400.1"
                     /translation="MPLYELSETFTRRQAIESGVSDARLRRLRTVGTLRAVRRGVFDR
                     TDVASSSKGQRHLAQARAAMDRFTTGYAVSHLSAAAAHGLPLPLGDLGPVHLTAIHAT
                     QRSRKSPGVVVHHADSSPTPVSETSGLVVTSVARTLADCLRTRGPRVSVPLADAALHR
                     GLLTIDELDDELARQRRWRGRPRALESLLLVDWRRESWLESYGCVRLSEWGLALPEPQ
                     VTVFDPWGEFVARVDGAYQEDCTVVEFDGRSKYGLDGGSDAYGSSFFREKQRHNALVN
                     VGLVVVRLELADLLQHV"
     gene            1091..1465
                     /locus_tag="VGN19_00540"
     CDS             1091..1465
                     /locus_tag="VGN19_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012801736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEV7194401.1"
                     /translation="MRFLIKIAVNAVALWAAAWLIPGISFGGGKFGSTFATVLLVALV
                     FGVVNTFVRPVVKLLSFPFIILTLGLFTFIVNAFMLQLTEWLSGPLGLSFTIRHFFWD
                     AVLGALVITLVSMVLHWVVPDE"
BASE COUNT          243 a          546 c          538 g          255 t
ORIGIN      
        1 cacgtgctgc agcaagtcgg cgagctcgag gcgcacgacc acgagcccta cattgacgag
       61 cgcgttgtgg cgctgtttct cccggaagaa gctcgacccg taggcatccg atcccccgtc
      121 gagcccgtat ttgcttcgcc cgtcgaactc cacgaccgtg cagtcctcct ggtacgcccc
      181 gtcgactcgg gccacgaact caccccaagg gtcgaagacg gtgacctgcg gctccggcag
      241 tgcaaggccc cactcgctga gccgaacgca gccgtacgac tcgagccagg actcgcgccg
      301 ccagtcgacc aggaggagcg actccagggc ccgaggccgt ccgcgccaac gccgctgccg
      361 ggccagctcg tcgtccagct cgtcgatcgt gagcagaccc cggtggagcg cggcatcggc
      421 caagggcaca gacactcgcg gcccgcgggt gcgcaggcag tcggcgagag ttcgcgcgac
      481 ggaggtgacg accaggcccg acgtctcgct caccggcgtc ggagaagagt ctgcgtggtg
      541 gaccacgacg ccgggtgact tccgtgagcg ctgggtggca tgaatggccg tgaggtgcac
      601 gggtccgaga tccccgagcg gcagggggag tccgtgggcc gccgccgcgc tgagatggct
      661 cacggcatac cccgtggtga agcgatccat cgccgcgcgt gcctgggcga ggtggcgttg
      721 ccccttgctc gacgaggcaa cgtccgtgcg gtcgaacacg ccacgtcgga cggcccgcag
      781 ggtgcccacg gtgcgaagcc ggcgcaaccg ggcgtcgctg acccccgact cgatggcctg
      841 acgtcgggtg aaggtctcgg acagctcgta aagtggcatg gtcgcaggtt cgccgcgacg
      901 gtcgacccca acgaagccac ccgaaaccgt cctgtggacg ccacagcgga ggacgcggcg
      961 ttggggatgt cgcccgcccg ccacccccgt ctcccgaccg gactacggaa gttgtgcgtg
     1021 gcgcctccta gtcggcagca acacgcacaa cttccgtagt ttggtcgagg aggggtggca
     1081 ccatcggggc atgcgcttcc tcatcaagat cgcggtcaac gcggtcgccc tgtgggccgc
     1141 ggcgtggctg attccgggga tctcgttcgg cgggggcaag ttcggctcga ccttcgcgac
     1201 cgtcctgctc gtcgcgctgg tcttcggcgt cgtcaacacg ttcgtcaggc ccgtcgtgaa
     1261 gctgctcagc ttcccgttca tcatcctgac cctcgggctg ttcacgttca tcgtcaacgc
     1321 cttcatgctc cagctgaccg agtggctctc cgggccgctg ggtctgtcgt tcaccatccg
     1381 gcacttcttc tgggatgccg ttctgggcgc cctggtcatc acgctggtct cgatggtcct
     1441 gcactgggtc gtcccggacg agtgaggcca gccatagggt ggacgccatg agcgacagcg
     1501 aggtcaggct ccggacggcc ctggaccagg tgccggcgta cgttcccgga aagcccgccg
     1561 cggcgcccga gggcatcacg gc
//
LOCUS       DASYFY010000029         6282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1420294, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000029 DASYFY010000000
VERSION     DASYFY010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6282
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1420294"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..959)
                     /locus_tag="VGN19_00545"
     CDS             complement(15..959)
                     /locus_tag="VGN19_00545"
                     /inference="COORDINATES: protein motif:HMM:NF022824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper transporter"
                     /protein_id="HEV7194402.1"
                     /translation="MIDFRYHLVSIVSIFLALAVGIVLGAGPLKEDIGNTLTSEVKNL
                     RDDKTALRAELDSATKGNQARDEFTAASNRTLLSGRLTGTTVTVVVLPGAEGTLVKST
                     TDTLTAAGARIGSTVTVLDSWIDPGKAAFRVSLGQQLANQVQLPVGQSSGEEVNQVLA
                     RTVVAKAGTATTSGATAALESLRTGDLVRYTPDHITPGTVAVVVAGPVTGSDSATRDA
                     RAQAMSAIAGALDSAGAGAVLVAPSLPVTVKDQGSVVATARANGDLAKVLTTVDDGEI
                     PMGQASVVLGLIEQESGKSGHYGLAGDADATFPQLTTK"
     gene            complement(956..2140)
                     /gene="steA"
                     /locus_tag="VGN19_00550"
     CDS             complement(956..2140)
                     /gene="steA"
                     /locus_tag="VGN19_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cytokinetic ring protein SteA"
                     /protein_id="HEV7194403.1"
                     /translation="MPMKLPRQRSREPHSPGVRGVARVDARTKNLTKRLKPGEIAIID
                     HQDIDKVSAEALLACRPAAVVNAAASISGRYPNLGPEILVDAGIPLLDHVGRDIMHTV
                     HEGELVRVDGDQVWVGETVVATGQAFDHDLVESSMNEARAALAVQLEAFAANTMEYLR
                     RERDLLLDGVGVPDIRTVLEGRHALIVVRGYHYKEDLRMLRSYIREYRPVLIGVDGGA
                     DALIEAGLKPHLIVGDMDSVTDSTLRCGAEIVVHAYRDGTAPGLERVRRVGVEPVVFP
                     ATGTSEDVAMLLADDKGASLIVAVGTHATLVEFLDKGRSGMASTFLTRLRVGGKLVDA
                     KGVSRLYRSRISNLTLTLMLLVGLSALFAALWSTTGGHAFLQVLGARWDDFWSFVVGI
                     VT"
     gene            complement(2227..3957)
                     /gene="recN"
                     /locus_tag="VGN19_00555"
     CDS             complement(2227..3957)
                     /gene="recN"
                     /locus_tag="VGN19_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEV7194404.1"
                     /translation="MLQELRIQRLGVIDEAVLDLHPGLNVVTGETGAGKTMVVTGLGL
                     LLGARADTGLVRAGEANAVIEGVIDIPADHAAAVRAAEAGADVSDGLVLVRSLSAEGR
                     SRAHVGGRSAPVGVLAEIGEHLVAVHGQADQWRLRQSDQHRAMLDQFGGQPLRDALSA
                     YQAVFADHESATRELAELRGQARDRAQELELLQHGLNQLEELDPQPGEDVQLRIEDER
                     LGHAEGLRGAAAQAHDLLSGAADYAGEATPSAMDTVAAARQALSGEVDHDPALRELDR
                     RLADVGYLVADLATDLSGYLAEVEVDPSRLAWVQQRRADLTSLTRRYGETVDEVLAWG
                     QVAAARVDALATVDGRIDELEPRVAELAAALVERAAELTDARTVAAAELGAAVSRELG
                     HLAMGQASVVVQVTPRGGGPGRHGADDVEILLAANPGSPARTVTKAASGGELSRVMLA
                     LEVVTGAAGAVDIPTFVFDEVDAGVGGTAALDVGARLAALAQHAQVVVVTHLPQVAAY
                     ADRHLVVRKASDGHITSSGVHALEGEDRLRELARMMAGVDSESALDHARELVSEAASR
                     RAAATSAVPH"
     gene            complement(4038..4979)
                     /locus_tag="VGN19_00560"
     CDS             complement(4038..4979)
                     /locus_tag="VGN19_00560"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015779215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEV7194405.1"
                     /translation="MSTPSEPSPHRKILLVAHPRRQEAAEVAVGVVERLRAAGIEVLV
                     QRQEAAAVNLSQQQGVTLIDHDNPAQGCELVCVLGGDGTILRGAEVSRGSGAPLLGVN
                     LGHVGFLAEAEREDLGATVEHIVARSYTVEERMTLEVTAQVDGSEVYSSWALNEVTVE
                     KANRERMLEVVAEIDGRPLTTWGCDGVVVATPTGSTAYAFSAGGPVVWPGVEALLLVP
                     ISAHALFARPLVLGPDSHLALEVVPDTLGTGALWCDGRRAVDLPPGARIEVVRSDIPV
                     RLARLSTSPFTDRLVAKFDLSIHGWRGKARLEEAARG"
     gene            complement(4997..5803)
                     /locus_tag="VGN19_00565"
     CDS             complement(4997..5803)
                     /locus_tag="VGN19_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEV7194406.1"
                     /translation="MSETTRLDLELVRRGLARSRGHARSLVDAGEVSVSGSIATKAST
                     PVADGEVIEVHEQGPRWVSRAAYKLVGAFEMFGPQGLVAAGRRCLDVGASTGGFTQVL
                     LHRGAAHVVALDVGHGQLVAELVGDPRVEDRSRTTVRGVLPETLGGRFDLVVADLSFI
                     SLTLVLETLRGLVRDHGDVVVLVKPQFEVGRTRLGRGGIVRTQGDRAWAITEVARAAL
                     DAGLHPRALAASPIDGTEGNAEYLLWLTPRAEDSMGWEAVVRTADQVSAP"
     gene            5842..>6282
                     /locus_tag="VGN19_00570"
     CDS             5842..>6282
                     /locus_tag="VGN19_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194407.1"
                     /translation="MDAAGSLELCVEIVGGCVLQVLERRVDHDVPGGVVAESGRGLRL
                     AVSFRVLLGGRLRRVLGMLVGHYVAFWVVDFRAAGACFAVVFLAVVFFAVAALLVAIF
                     AGEVFLVAIFAGEVFLAGTTLLADAVLVAVFVAVRFVAVRFVAVR"
BASE COUNT          873 a         2260 c         2203 g          946 t
ORIGIN      
        1 agggcgcgca tggcctactt cgtcgtcagc tgggggaacg tcgcatccgc gtcgcccgcc
       61 agaccgtagt gcccggactt gcccgactcc tgctcgatca gccccagcac gacgctggcc
      121 tggcccatcg gtatctcacc gtcatcgacc gtggtcagca ccttggcgag gtctccgttg
      181 gcgcgggcgg tcgccaccac cgagccctgg tccttgacgg tcaccggcag gctgggcgcc
      241 accagcacgg caccagcacc agcactgtcg agggctccgg cgatcgcgct catagcctga
      301 gcccgggcgt cccgagtggc cgagtcactg cccgtcacgg gtcctgcgac caccacggcg
      361 accgtgccag gggtgatgtg gtcgggggtg taccggacca ggtcgccggt gcgcagcgac
      421 tccagggcgg cggtggcgcc ggaggttgtc gcggtgcccg ccttggcgac gaccgtcctg
      481 gccagcacct ggttcacctc ctcgccgctg gactgaccga cgggaagctg gacctggttg
      541 gccagctgct gacccaggga gacgcggaag gcggccttgc cggggtcgat ccaggagtcg
      601 agcaccgtga ccgtggagcc gatcctggcg cccgccgcgg tcagggtgtc ggtggtggac
      661 ttcaccaagg tcccctcggc tccgggaagc acgacgacgg tgaccgtggt ccccgtcagc
      721 cgcccggaaa gcagggtgcg gttgctggcg gcggtgaact cgtcacgcgc ctggttgccc
      781 ttggtggcgc tgtcgagctc ggcccgcagg gcggtcttgt cgtcacggag gttcttgacc
      841 tccgaggtga gggtgttgcc gatgtcctcc ttcagcgggc cggcgcccag gacgatcccc
      901 acggcgaggg ccaggaagat cgagacgatg gagaccaggt ggtaccggaa gtcgatcacg
      961 tgacgattcc tacgacgaag gaccagaagt cgtcccagcg ggcgcccaga acctggagga
     1021 aagcatgccc cccggtggtc gaccacaggg cggcgaacag tgcgctcagc cccacgagga
     1081 gcatcagcgt cagggtcagg ttggagatgc gcgagcggta gagccggctg acccccttgg
     1141 cgtcgacgag cttgccgccg acacgcaggc gggtcaggaa ggtgctcgcc atcccgctgc
     1201 ggcccttgtc aaggaactcg acgagggtcg cgtgcgtgcc cacggcgacg atgagcgagg
     1261 cgcccttgtc gtcggccagc agcatcgcca cgtcttcgct ggtgccggtg gccgggaaga
     1321 ccacgggttc caccccgacc cgccgcaccc gttccagtcc gggggcggtg ccgtcccggt
     1381 aggcatggac gacgatctcg gcaccacagc gcagggtcga gtcggtcacc gagtccatgt
     1441 caccgacgat gaggtgcggc ttgagtcccg cctcgatgag cgcatcggcg ccgccgtcca
     1501 ccccgatcag cacggggcgg tactcccgga tgtagctgcg cagcatccgc aggtcttcct
     1561 tgtagtggta gccgcgcacg acgatcagcg cgtgccgtcc ctcgaggaca gtacggatgt
     1621 cgggcacccc gaccccgtcc aggagcaggt cgcgctcgcg gcgcaggtac tccatggtgt
     1681 tggccgcgaa ggcctcgagc tggaccgcca gtgcggcccg cgcctcgttc atcgacgact
     1741 cgaccaggtc gtggtcgaag gcctggccag tggcgaccac ggtctcgccg acccagacct
     1801 ggtcgccgtc gacgcggacc agctcgccct cgtgcacggt gtgcatgatg tcccgcccca
     1861 cgtggtcgag cagggggatg cctgcgtcca cgaggatctc gggccccagg ttggggtagc
     1921 gaccggagat cgacgcagcc gcgttgacga ccgccgctgg ccgacaggcc agcagcgcct
     1981 cggcactgac cttgtcgatg tcctgatggt cgatgatcgc gatctcaccg ggcttgagtc
     2041 gcttggtgag gttcttggtg cgggcgtcca cgcgcgcgac cccacgcacc ccggggctgt
     2101 ggggttcgcg ggagcgttgg cggggcagct tcattggcat cctgcccatc ctcccatggg
     2161 gcgtcatccg ggccgccgcc cccacgcgga ggtctgcgcg ggcaggtcag ggtaggtcag
     2221 ggtaggtcag tggggaaccg cggaggtggc agccgcgcga cgcgacgcgg cctcggacac
     2281 gagctcccgg gcatggtcca gtgcggactc gctgtcgacc ccggccatca tccgggcgag
     2341 ctcgcgcagc cgatcctcac cctcgagggc gtgcaccccg ctggaggtga tgtgcccgtc
     2401 gctcgccttg cgcacgacca ggtgccggtc cgcgtaggcc gcgacctgcg gcaggtgggt
     2461 gacgacgacg acctgggcgt gctgggccag tgcagcgagt cgggctccga cgtccagggc
     2521 tgcggtcccg ccgacgcccg catccacctc gtcgaagacg aaggtcggga tgtcaaccgc
     2581 tcccgccgcc cccgtgacga cctccagggc cagcatgacc cgggacagct caccgccgga
     2641 cgccgccttg gtgacggtgc gagcagggct ccccgggttg gccgcgagca ggatctccac
     2701 gtcgtcggca ccgtgacggc ccgggccgcc acctcgcggc gtgacctgga cgacgacgct
     2761 ggcctgaccc atcgccagat ggccgagctc tcgcgacacc gcggcgccca gctccgcggc
     2821 ggccacggtg cgggcgtcgg tcagctccgc tgcgcgctcc accagcgcgg cagcgagctc
     2881 agccacccgc ggctcgagct cgtcgatccg accgtccacg gtggccaggg cgtcaactcg
     2941 tgcggcggcc acctgccccc aggccaggac ctcgtcgacc gtctcgccgt agcgccgggt
     3001 caggctggtc aggtcggcgc gccgttgctg cacccacgcc aaccggctcg ggtccacctc
     3061 gacctcggcg agatatcccg aaaggtcggt ggccagatct gccacgaggt agcccacgtc
     3121 cgccagccga cggtcgagct cgcgaagcgc agggtcgtgg tcgacctcac cggacagtgc
     3181 ctgacgggcg gccgcgacgg tgtccatagc gctgggagtc gcctcgccgg catagtccgc
     3241 cgcacccgaa agcaagtcgt gagcttgcgc cgcggcgccc cgcaggccct cggcgtgccc
     3301 gaggcgttcg tcctcgatgc gcagctggac atcctcacct ggctgcgggt cgagctcctc
     3361 gagctggttc agtccgtgct ggagcagctc cagctcctga gcgcggtcgc gagcctgccc
     3421 ccgcagctcg gccagctcgc gcgtcgccga ctcgtggtcc gcgaacaccg cctggtacgc
     3481 gctcagggcg tcgcgcaacg gctggccacc gaactggtcg agcattgcgc ggtgctggtc
     3541 actctgccgc aggcgccact ggtcagcctg accgtgcacg gccacgaggt gctcgccgat
     3601 ctcggcgagt acccccacgg gcgcgctgcg tcccccgacg tgggcccgcg agcggccctc
     3661 ggccgagagc gagcggacca gcaccaagcc gtcactgacg tcagccccag cctcggcggc
     3721 gcggacggcc gcggcatggt cggccgggat gtcgatgaca ccctcgatca cggcgttggc
     3781 ctcaccggct cggaccaggc cggtgtcggc gcgggcgccg agcagcagtc cgagccccgt
     3841 cacgaccatg gtctttccgg cgccggtctc cccggtcacg acattgagtc cgggatggag
     3901 gtcaaggacg gcctcgtcga tgacccccag acgctggatc cggagttcct ggagcacggc
     3961 cccaccctct cacgggccgc cgacgcgacc ggggaggagc gcccctgctg gtctgggtgc
     4021 cgcgacgggc ggaaccctca gccgcgcgcg gcttcctcca gtcgggcctt gcctcgccac
     4081 ccgtggatcg agaggtcgaa cttggccacc agccggtcgg tgaagggcga cgtgctcagg
     4141 cgcgccaggc gcaccgggat gtcggagcgc accacttcga tccgggctcc cggcggtagg
     4201 tcgaccgccc gccggccgtc gcaccacaac gcgccggtgc ccagggtgtc gggcacgacc
     4261 tcgagggcga ggtgggagtc cgggcccagg acgagcggcc gcgcgaacag ggcatgcgcg
     4321 ctgatcggca cgagcaacag ggcctcgacg cccggccaga ccaccggtcc gcccgccgag
     4381 aaggcatacg cggtcgaccc cgtcggcgtc gccaccacga ccccgtcgca gccccaggtc
     4441 gtcagcggac ggccgtcgat ctcggcgacc acctcgagca tccgctcacg gttggccttc
     4501 tccacggtga cctcgttgag tgcccagctg gagtagacct cggacccgtc gacctgcgcg
     4561 gtgacctcca gggtcatccg ttcctcgacg gtgtagctgc gggcgacgat gtgctccacc
     4621 gtcgccccca ggtcctcacg ctctgcctcc gccaggaacc cgacgtgtcc gaggttcacc
     4681 ccgagcaggg gggcgccgct gccacgggaa acctctgccc cgcgcaggat cgtcccatca
     4741 ccaccgagca cgcacaccag ctcgcatccc tgcgccgggt tgtcgtggtc gatgagcgtg
     4801 acgccctgct gctgcgagag gttgacggct gccgcctctt ggcgctggac gagcacctcg
     4861 atgccggcgg cccgcagccg ctcgacgaca ccgaccgcga cctcggcagc ctcctggcgt
     4921 cgtgggtggg cgacgagcag gatcttgcga tgtgggctcg gctcgctggg ggtgctcacg
     4981 tggcttccct tcgggttcac ggcgcgctga cctggtcggc agtcctcacc acagcctccc
     5041 atcccatcga gtcctcggcc cgaggggtca gccacagcag gtactcggcg tttccctcgg
     5101 tgccgtcgat ggggctcgcg gccaaggcgc gtgggtgcag gccggcgtcc agcgccgccc
     5161 gcgctacctc ggtgatggcc caggcgcggt caccctgcgt gcgcacgatg ccgccccttc
     5221 ccaggcgggt tcgccccacc tcgaactggg gcttgacgag cacgacgacg tcgccgtggt
     5281 cgcgcaccag gccacgaagg gtctcgagca ccaacgtcag cgagatgaag ctcaggtcgg
     5341 ccacgaccag gtcgaaccgg ccgccgaggg tctcgggtag cacgccgcgg acggtggtcc
     5401 gggagcggtc ctccacgcgc gggtcgccga cgagctccgc gaccagctgc ccgtggccga
     5461 cgtcgagcgc gacgacgtgg gcggcgccac gatggagcag cacctgggtg aacccgccgg
     5521 tcgaggcccc cacatccaga cagcgtcgcc ccgctgcgac caggccctgc gggccaaaca
     5581 tctcaaaggc ccccaccagc ttgtatgccg cccggctcac ccatcgcggc ccctgctcgt
     5641 gtacctcgat gacctcgcca tcggctactg gcgtcgaggc cttcgtggcg atcgagccgg
     5701 aaacgctgac ctcgcccgcg tccaccaggg agcgagcgtg cccgcgagag cgcgccaagc
     5761 cgcggcgcac cagctcgagg tcgagccgag tggtctcgct cacgcgccgc cgaggtccga
     5821 gagccgtgcc tgaagggtct ggtggacgcg gctggcagcc tcgagctgtg cgtcgagatc
     5881 gtcggcgggt gcgttctgca ggtcctggag cgccgagtcg accacgatgt ccccggtggc
     5941 gtggtcgccg agtccggccg aggactgcgg ctcgcggtca gcttcagggt gctgctggga
     6001 ggccggctgc gaagggtgct gggaatgctg gtcggtcact acgttgcctt ctgggtcgtg
     6061 gacttccggg ccgctggggc ctgcttcgcg gtggtcttct tagcggtcgt cttcttcgcg
     6121 gtggccgcgc tcttggtggc aatcttcgcg ggcgaagtct tcttggtggc aatcttcgcg
     6181 ggcgaagtct tcttggctgg cacgaccctc ttggctgacg ccgtcttggt agccgtcttc
     6241 gtcgccgttc gcttcgtcgc cgttcgcttc gtcgccgttc gc
//
LOCUS       DASYFY010000030         8246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_474361, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000030 DASYFY010000000
VERSION     DASYFY010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8246
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474361"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VGN19_00575"
     CDS             complement(<1..645)
                     /locus_tag="VGN19_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEV7194408.1"
                     /translation="MTRQRPDPDHPDHGTGRHGEHHDLTQQHRDHDHDEHSHSLRERL
                     AHLVRPHSHDAADSVDDALKGSAEGIRAVKVSLVGLGATSLLQLAIVVTSGSVALLAD
                     TIHNASDALSALPLWMAFALGRRVPTRRYTYGYGRAEDLAGLFVVLMIALSALIAGYE
                     AINRLLHPAPVHHLAWVAVAGVVGFLGNEVVAVYRIRVGRRIGSAALVADGLHAR"
     gene            complement(642..1028)
                     /locus_tag="VGN19_00580"
     CDS             complement(642..1028)
                     /locus_tag="VGN19_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7194409.1"
                     /translation="MNAGNQEDRELPVEQAELAVEVFRMLSDTTRVRLLWALLEAELP
                     VNELAEVVGKPGPSVSQHLAKLRMARLVRTRREGTQVFYRVENDHVARLVRDAVFNAE
                     HAGPELPQHHAADATRLRSTGTGGPE"
     gene            complement(1454..2029)
                     /locus_tag="VGN19_00585"
     CDS             complement(1454..2029)
                     /locus_tag="VGN19_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194410.1"
                     /translation="MSLSKPVAALSCTAALSAVLLGGCSPSSQAGAGMMGGDHGYHYS
                     RLACSPPVTLPGATVQVVLADMGMTRMMGGDAPLGGRMMLHAAPTVVAAGTVSLVARN
                     LGWRTHELIVLPLTAASSAGERLAGPDGKVPEAGSLGEASSSCAAGQGDGITSGAVGW
                     VTLNLAPGRYELVCNLKNHYVNGMHDELDVR"
     gene            2251..3432
                     /locus_tag="VGN19_00590"
     CDS             2251..3432
                     /locus_tag="VGN19_00590"
                     /inference="COORDINATES: protein motif:HMM:NF015715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEV7194411.1"
                     /translation="MTIIHALRRALTMAAAMGWEILWPLVLGFFLSGVVQAVVRREQV
                     TRYLASDSPRSLAWATGLGAASSSCSYAAVALARSLFRKGASLSAAMAFEIASTNLVI
                     ELGIILALLMGWQFTLAEFIGGPIMIVVVALAFRLWMRGRIVDAARDQANRGLAGSME
                     GHAAMDMAVQGEATLWQRLFSRHGFTAVANYYVMDWASVLRDIVIGLLIAGAFAAWVP
                     TSWLQSFFLTSDPTAAKIWGPVIGPLLAVLSFVCSIGNVPLAAVLWNGGISFGGVVSF
                     IFADLIIVPIILIYRKYYGTAAALRITGIFYLAMVAAGYIVESLFGALHLVPTTRNAT
                     VIEAGFSWNYTTWLNLAFLALTGVLLTRFVRTGGVPMLKMMGGAPPPAQAAPGHGEHH
                     H"
     gene            3728..4342
                     /locus_tag="VGN19_00595"
     CDS             3728..4342
                     /locus_tag="VGN19_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017834582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEV7194412.1"
                     /translation="MFGNRFARHVARRYRKRGLGGTEQHIVDFLVGRGIEGASVLEIG
                     GGVGELHLELLRRGAARATNLELVDAYDATANELASEAGVGDRIERRVLDIAATPGQV
                     GPADVVVLHRVVCCYPDFERLLGAAADHAQRLLVFSHPPRNAASRLVLAAQNAAFRVS
                     GRSFRTFAHPPARMLDVLGAHGLSPVYDHQGLVWRVAGLERPPA"
     gene            complement(4566..6617)
                     /locus_tag="VGN19_00600"
     CDS             complement(4566..6617)
                     /locus_tag="VGN19_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019046199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEV7194413.1"
                     /translation="MTSTISPSLREADPTGSGPRGTRSQGWGLLALAEVRWAVAATVL
                     FAVGGSFQLLGAPPVVWWALYLACYATGGWEPALAGLQALREKTLDVDLLMIVAAVVA
                     ASIGQVFDGALLIVIFATSGALEAVVTRRTADSVRALLDFAPEQATLLHEDGTEDVVA
                     TAELVVGDTILIRPGERVGADGEVLYGASEVDQATITGEPLPVLKEVGDEVFAGTLNG
                     TGALRVRVHRGAADSVVARIVAMVEDASATKAKTQLFIEKVEQRYSVGVVVATLGLFF
                     IPLAAGAELRPTLLRAMTFMIVASPCAVVLATMPPLLAAIANAGRHGLLVKSAVVMEK
                     FREITLVAFDKTGTLTEGTPRVADVAALRDQSLGTDDVLRFAAAAERSSEHPLARAVV
                     TAAHDRGLSLPHADDFTSTPGRGVSATVQGQQVRVGSPALLGELATTAARDHAHQAVA
                     ALEGSGATAVVVLLDETPVGVLSLVDGVRADARATVAALTTLTGATPILLTGDNVGAA
                     TRLAQEVGITDVRASLLPADKVTHVQALQAAGHKVLLVGDGVNDAPAMATAHLGVAMG
                     RHGSDLALETSDAVIVRDELDILTKVIDLSGRAHRVVKANLVIAATVISLLVIWDLVW
                     ILPLPLGVAGHEGSTVIVGLNGLRLLRLTAWRRAGGRAPLKQSGVARSTTSDAAPSRR
                     S"
     gene            6704..7057
                     /locus_tag="VGN19_00605"
     CDS             6704..7057
                     /locus_tag="VGN19_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005054880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7194414.1"
                     /translation="MGHGVNARTRRARLDMAAAKSVAETLQALATPSRLLILGRLREG
                     PATVGQLSADVEMEQSAVSHQLRLLRHLGLVEGQRLGRSVTYSLYDDHVAQLLDEAVY
                     HAEHLRLGAPDRSAG"
     gene            complement(7340..>8246)
                     /locus_tag="VGN19_00610"
     CDS             complement(7340..>8246)
                     /locus_tag="VGN19_00610"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEV7194415.1"
                     /translation="RLGFLRGGHVGPRQGLLIAGDAPLASGAQWVRAGGVRLVQGVLG
                     EGSAPEEAVMVTKRAAYGAGSLSSERRWHSRPATRSVVLVALLTVLGLAGCAGSARTV
                     GSSNAAPTTGLSSPLANIGPLPSTLGGGRFDPAVLAGKPVVLWFWAPWCSVCRSEGPT
                     IAKVASQFTGRVRFIGVAGEDTVAAMRAFVQQTGTGALTHLADVNGVVWRDYGVSVQP
                     AFALISADGTANLRIGSLDEQTLRARVAELAAGTRTSSVTMTPGLYCSRAPDGWTVCG
                     ASGPPHTSTNAHPLTGSLPGVYPGR"
BASE COUNT         1237 a         2887 c         2847 g         1275 t
ORIGIN      
        1 gcgggcgtga agcccgtcgg cgaccagcgc cgctgacccg atgcgccggc ccacccggat
       61 ccggtacacg gcgaccacct cgttgccgag gaagcccacc acaccggcga cggcgaccca
      121 ggcgaggtgg tgcaccgggg cggggtgcag cagccggttg atggcctcat agccggcgat
      181 gagcgcggac agggcaatca tgaggacgac gaacaggccg gcgaggtcct cggcccggcc
      241 gtagccgtag gtgtagcgcc gggtggggac gcggcggccc agggcgaacg ccatccacag
      301 tggcagcgcc gacagggcgt cggacgcgtt gtggatggtg tcggctagga gggccaccga
      361 ccccgaagtg accacgatgg cgagctggag cagggaggtt gcgccgagcc cgactaggct
      421 gaccttgacc gcgcggatgc cctcggcgct gcccttgagt gcgtcgtcca ccgagtcggc
      481 agcgtcatgc gaatgcgggc gtaccaggtg ggctaggcgc tcacgcagtg agtggctgtg
      541 ctcatcgtgg tcgtggtcgc gatgctgctg tgtgaggtcg tggtgctcgc catggcggcc
      601 ggtgccgtgg tcgggatggt cgggatcggg tcgctggcga gtcattctgg tcctccggtc
      661 ccggttgagc gcagcctggt ggcgtctgcg gcgtggtgct ggggcagttc ggggccggca
      721 tgctcggcgt tgaacacggc gtcgcgcacc agccgcgcca cgtggtcgtt ctccacccgg
      781 tagaacacct gggtgccttc gcgacgtgtg cgcaccagcc gcgccattcg cagtttggcc
      841 aggtgctggg acaccgacgg cccaggcttg ccgaccacct ccgcaagctc gttgaccggc
      901 agctcggcct ccaacagtgc ccacagcagc cggacccggg tggtgtcgga aagcattcgg
      961 aacacctcga ccgccagctc cgcctgctcg actggcagct ctcgatcttc ctggttgcct
     1021 gcattcatac gcagacacta cgggaacgat ggaacattgc cgctgatcgt cgtcatgcgg
     1081 cggcctatgc cgcagggccc gcgggggcgc cgctgaaggc ccgggctcgt tttcatcagc
     1141 cctccacgcc gtctcccgtg tcgacatgtc atggtttgct ccggtcagct tggtcggcac
     1201 gagcatgggc cccacggcgt ggccgtcgcc cgtctctgtg cccccgaact gggcgcgacc
     1261 gcagggcagg ggccgccctg ccctggcctg agcgacggtg atgtgatgtg agcggggcgg
     1321 agggtcgtcg actgcccgtg tgcgtccaag ccgtggttgt ccacaggacc cctatggaca
     1381 accatggatg gtgcgtcggc gccagcgggc ggagcacctg actggcaggg cgccgacagc
     1441 ggcggccgtg ccttcagcga acatccagct cgtcgtgcat tccattgacg taatggttct
     1501 tcaggttgca caccagttcg tatcggccag gtgcgaggtt gagggtgacc cagccaaccg
     1561 cacccgaggt gatgccgtcg ccctgcccgg ccgcgcagga actggatgcc tccccgaggc
     1621 tgcccgcctc ggggaccttc ccgtccgggc cagcgagccg ctctcccgca ctcgatgcgg
     1681 ccgtcagagg caggacgatg agttcgtgcg ttcgccagcc caggttgcgc gccacgaggc
     1741 tcacagtgcc agcggctacc acggtcggcg ccgcgtgcag catcatccgc ccgcccaagg
     1801 gggcgtctcc tcccatcatc cgggtcatgc ccatgtcggc gagcacgacc tggaccgtgg
     1861 cgccgggcaa cgtcaccggc ggcgagcacg ccagccgcga gtagtggtaa ccatggtcgc
     1921 cgcccatcat cccggcgccc gcctgacttg acggggaaca cccgccgagc agcaccgccg
     1981 acaaggccgc cgtacagctc aaggcggcta ccggcttgga gagactcact gacacgaacc
     2041 aagtggaaca ggcgccgagg cccacccact gtgacctacg tccctgctcg ccagcgtccc
     2101 gacggcatca gactcccgcg tgccctgttc ccgcgcgcgg cactaccctc gaagtgctcg
     2161 cggccatcct cacggggtgt gccggtccac caacctcgag aagggcattc cttcacaacc
     2221 acgcccgggt agcccagagg ggagagctcc atgacgatca ttcatgcgct gcgtcgtgcc
     2281 ctgaccatgg cagcggcgat gggctgggag atcctctggc cgctcgtgct gggtttcttc
     2341 ctgtccggtg tcgttcaagc ggtagtgcgc cgcgagcagg tgacccggta cctggccagc
     2401 gactcaccac gctccctggc ctgggccacc ggtcttgggg ccgcctcgtc ctcctgctcg
     2461 tatgccgcgg tcgcgctggc ccggtccctt ttccgtaagg gtgcctccct gagtgcggcg
     2521 atggcgttcg agatcgcctc gacgaacctg gtcatcgagc tcggcatcat cctggcgctg
     2581 ctgatgggct ggcagttcac cctggccgag ttcatcggtg gccccatcat gatcgttgtg
     2641 gtcgccctcg cgttccggct gtggatgcgt gggcgcatcg tcgacgcagc ccgcgatcag
     2701 gccaaccggg ggctcgccgg gtcaatggaa ggacacgcag cgatggacat ggccgtccaa
     2761 ggtgaagcca ccctgtggca gcggctgttc tcacgccacg ggttcaccgc cgtcgcgaac
     2821 tactacgtca tggactgggc gtccgtgctg cgcgacatcg tcatcggcct gctcatcgct
     2881 ggcgctttcg ccgcatgggt cccgaccagc tggctgcaaa gcttcttcct cacctccgac
     2941 ccgaccgccg cgaaaatctg ggggccggtc atcggcccgc tcctcgccgt gctcagcttt
     3001 gtctgctcca tcggcaacgt ccccttggcc gcggtactgt ggaacggcgg cattagcttc
     3061 ggcggggtgg tcagcttcat cttcgccgac ctgatcatcg tccccatcat cctgatctac
     3121 cggaagtact acggcaccgc ggccgcgctg cgcatcaccg ggatcttcta cctggccatg
     3181 gtcgcggccg ggtacatcgt cgagagcctg ttcggggccc tgcacctcgt cccgaccacg
     3241 cgcaacgcaa cggtcatcga ggccggcttc agctggaact acacgacctg gctcaacctg
     3301 gccttcctgg ccctcacggg tgtcctgctg acccggttcg tccgcaccgg cggcgtcccc
     3361 atgctgaaga tgatgggcgg ggcgccgccc ccggcgcagg ccgcacccgg ccacggcgaa
     3421 caccaccact gagtcttacc tcccgaaccg gtcacggtga ccccggcaca cagcagcgaa
     3481 gggcctgaga agggtcggcg atgccctggt cggggcattg ccaactgctc gcgtcgttcc
     3541 ttcgtcccaa cgcgtcttcg gcatgtagag gactacacga cgcgactggc catgggcgag
     3601 cgggaggcgc cttgcaacgg gcggcgtatc cacggctgcc cggcgcccgt ccaccgcggc
     3661 ggaacagcca ggccgggtgc atactccagg agtggcaggg tgctgcgacc cacgcgggtg
     3721 cgatggcgtg ttcggcaacc ggtttgcccg gcacgtcgca aggcgctacc gcaaacgcgg
     3781 acttggcggc accgagcagc acatcgtgga cttcctcgtc ggtcgtggca tcgagggggc
     3841 cagcgtcctg gagattggtg gcggagtcgg cgagctgcac cttgagctcc tgcgccgcgg
     3901 ggctgcccgc gccacgaacc ttgagctcgt cgacgcctac gacgcgaccg ccaacgagct
     3961 cgcatccgag gccggcgtgg gcgaccgcat cgaacgacgc gtgctggaca tcgccgccac
     4021 cccggggcag gtcgggccag ccgacgttgt ggtgctgcac cgcgtggtgt gctgctaccc
     4081 cgatttcgag cggttgctcg gcgccgctgc cgaccacgcg cagcgcctgc tcgtgttcag
     4141 ccacccgccg cgcaacgccg ccagccggct cgtgctggcc gcgcagaacg ccgcgtttcg
     4201 ggtcagcggc cgatcgttca gaaccttcgc gcatcctccc gcgcggatgc ttgacgtact
     4261 gggcgcgcac ggcctgagcc cggtgtacga ccaccagggc ctggtgtggc gcgtcgccgg
     4321 tctggagcga ccaccagcct gattcggcct ggccccagta ctcccaccat ggcctgggat
     4381 ggcacagggg tcgggggaga acgtaaagca acgtgattgg acctacccgt tgggtggacc
     4441 gcgccgcccc ctcttgcgtg cggtgggggt gcgttggttt gggcgcttgt cgcggccggc
     4501 gatgagtggg cagttggcgc accttggggt ggatcggcag caggtgacgc gcttgtgatg
     4561 gcccatcagc tgcggcgcga cggggcggcg tcgctcgtcg tgctcctcgc gacaccggac
     4621 tgcttgagcg gtgcgcggcc accggcccga cgccaggctg tcaggcgtag caggcgcagg
     4681 ccgttgagtc cgacgatgac ggtggatcct tcgtggccgg cgaccccgag gggcagcggc
     4741 aggatccaga ccaggtccca gatcaccagc aggctgatca cggtggcggc gatgacaagg
     4801 ttggccttga cgacgcggtg ggcccgcccg gacaggtcga tgaccttggt caggatgtcc
     4861 agctcgtcgc ggacgatgac ggcgtcggag gtttccaggg ctaggtccga cccgtgccgg
     4921 cccatcgcga cgccgaggtg agcggtcgcc atggcggggg cgtcattgac gccgtccccg
     4981 accaggagca ctttgtgccc ggccgcctgc agtgcctgga cgtgggtgac cttgtcggca
     5041 ggcagaaggc tggcacggac atcggtgatg cccacttcct gtgccaggcg ggttgccgcg
     5101 ccgacgttgt cccccgtgag caggatgggc gtcgctccag tgagcgttgt cagggccgcc
     5161 acagtggctc gagcgtcagc gcggactccg tcgaccaggc tcaggacccc tacgggtgtt
     5221 tcgtcgagga gaacgacgac ggcggtggcg ccggaaccct ccagggccgc tacggcctgg
     5281 tgggcgtggt cgcgggcagc cgtagtggcc agctcgccca gtagggccgg tgagccgaca
     5341 cgcacctgct ggccctggac ggtggcgctg accccgcggc cgggcgtcga ggtgaagtcg
     5401 tcggcgtggg gcaggctcag gccgcggtcg tgggctgcgg taacgacagc gcgggccagt
     5461 gggtgctcgc tggaccgttc tgcggcggca gcgaaccgga gcacatcgtc ggtgcccagg
     5521 ctctggtctc gcagggcggc cacgtccgca acgcgcgggg tgccttcggt gagggtgccg
     5581 gtcttgtcga acgcgacgag ggtgatctcg cggaacttct ccatcacgac cgcggacttg
     5641 accagcagcc cgtgccggcc ggcgttggcg atggcggcca gcagtggcgg catggtcgcg
     5701 agcacgaccg cgcacgggga ggcaacgatc atgaacgtca tcgcccgcag cagcgtcggg
     5761 cgcagctcgg cacccgctgc cagggggatg aagaacagtc ccagggtggc gacgacgacg
     5821 cccactgagt accgctgctc aaccttctcg atgaacagct gggtcttcgc cttggtcgct
     5881 gacgcgtcct cgaccatggc cacgatccgt gccacgaccg agtcggcggc gccccgatgg
     5941 acccgcacgc gcagcgctcc ggtcccgttc agggtgccgg cgaacacctc atcgccgacc
     6001 tccttcagca caggcagcgg ctcgcccgtg atggtggcct ggtcgacttc gctcgccccg
     6061 tacaggacct cgccgtccgc gcccacgcgc tcgcccgggc ggatcagaat cgtgtcgcct
     6121 accaccagct cagcggtagc caccacgtcc tcggtgccat cctcgtgcag gagggttgcc
     6181 tgttcggggg cgaagtccag caaggcccgg accgagtcgg cggtgcgccg ggtgacgacc
     6241 gcctccaatg cgcccgacgt ggcgaagatg acgatcagca gggcaccgtc gaacacctgc
     6301 ccgatcgagg cggcgaccac ggcggcgacg atcatcaaca ggtccacgtc cagggtcttc
     6361 tcacgcagcg cctgtagccc ggccagcgca ggctcccacc cgccagtggc gtaacaggcc
     6421 agatacagcg cccaccacac caccggtggg gcacccaaca gctggaagga gcccccgacg
     6481 gcgaacaaca ccgtcgcggc cacagcccag cgcacctccg ccagggccaa cagaccccac
     6541 ccttgcgatc tggttccgcg cggacccgac ccagtcgggt cggcctcacg aaggcttggg
     6601 gaaatggtcg aggtcacgcc ggactcctga aggatggtga gcagagcacg tcaactatac
     6661 gcacgtgaag acgtgttcat ttattccgtt gtatgctgct cgcatgggtc acggggtgaa
     6721 cgcgcgcacg cgcagggcgc ggctggacat ggcggcggcc aagtccgtcg cggaaacgtt
     6781 gcaggccctc gccactccca gccggctgct cattctcggc cgtctgcgcg aaggccccgc
     6841 cacggtcgga cagctctccg ccgacgtcga gatggaacag tcggccgtct cccaccagct
     6901 gcgactgcta cgccacctcg gcctggtcga ggggcaacgg ctgggccgca gcgtcaccta
     6961 ctccttgtac gacgaccacg tcgcccagct actcgacgaa gccgtctacc acgccgaaca
     7021 cctccgactc ggcgcgcccg accgcagcgc cggctgagtc gcgacgccca accacgccag
     7081 agcaagccgt gacggcgcgc ctctcggttc ccctgcgtag cgctccccag gtggcgttgg
     7141 ttgcctgcct ggtcgcccgg ggcgtatgca acgcgaacgc gaagcgtctc cccttggctc
     7201 gtcgtagcgg cgacccacgc cgctgccgcg aggccgcgct gtcccaggac ggtggtcagg
     7261 tagtcgggca gcagcgcgaa cccgcatggg ttgaacgcgg cgagcatccc ggccgaggag
     7321 gcgaacgcga tggccgcgct catcgaccgg ggtagacgcc tgggagggac ccggtcaacg
     7381 ggtgggcgtt tgtggaggtg tgcggtgggc cggaggcgcc gcagacggtc cacccgtccg
     7441 gtgcgcggct gcagtagagc cccggggtca tcgtcacgct cgaggtccgg gtgcccgctg
     7501 cgagctcggc gacccgcgcg cgcagggtct gctcgtccag gctgccgatc cgcaggttcg
     7561 cggtgccgtc ggcgctgatg agcgcgaacg ccggctggac cgagacgccg tagtcccgcc
     7621 agaccacccc gttcacgtcc gccagatggg tcagggcgcc cgtcccggtc tgctgcacga
     7681 aggccctcat ggcggccacg gtgtcctcac ctgcgacacc gatgaaccgc accctgcccg
     7741 tgaactggga cgcgaccttg gcgatcgtag gcccctcgct tcggcaaacc gagcaccatg
     7801 gcgcccagaa ccacaggacc accggcttac cggccaggac tgccgggtcg aaccgacccc
     7861 cgcccagagt ggatggcagc gggccgatgt tcgccagcgg tgaggacagg ccggtggtcg
     7921 gtgcggcgtt gctggacccc accgtccgcg ccgagccggc gcagcccgcc aggcccagca
     7981 ccgtcagcaa ggcgacaagg acgaccgagc gagtcgcggg gcgcgaatgc caccggcgct
     8041 cggagctcag gctcccggcg ccgtatgccg cgcgcttcgt gaccatgacc gcctcctcgg
     8101 gcgcagagcc ctcacccagg acaccctgga cgaggcgcac ccctcccgct cgtacccatt
     8161 gtgcgccgct cgccaggggc gcgtcgcctg cgatgaggag gccctgtcgc ggcccgacgt
     8221 gcccgccgcg gaggaagccg agtcgc
//
LOCUS       DASYFY010000031         5721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1157852, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000031 DASYFY010000000
VERSION     DASYFY010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5721
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1157852"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VGN19_00615"
     CDS             complement(<1..326)
                     /locus_tag="VGN19_00615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194416.1"
                     /translation="MSHRAPPRAPAQEKYVFQLDRAIGVVTIPVLTVPIAIAMAGTAQ
                     AATLPKPPTKALPSALDAASPYEPQSICDPVAKPGVLAFATLMTTYYKVGNTGGITRN
                     CDSGLT"
     gene            502..1305
                     /locus_tag="VGN19_00620"
     CDS             502..1305
                     /locus_tag="VGN19_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HEV7194417.1"
                     /translation="MDKVVSSAAEAIDGIVDGSSLAVGGFGLCGIPSVLIRAIHDAGM
                     RDLEAISNNCGVDDWGLGILLRDKRIRRMVSSYVGENKEFERQYLNGELEVELTPQGT
                     LAERLRAGGAGIPAFYTITGAGTQVADGGLPWLYAADGTVAKSSPRKETKVFDVDGTD
                     REFVLERAIVADFGLVRALKGDRHGNLVFDKSARNFNPLCAMSGRVTVAEVEELVEPG
                     ELDPDQVHLPGIYVHRVLPLTPEQAAQKRIERRTVRPRPTTTATTSLEN"
     gene            1307..1945
                     /locus_tag="VGN19_00625"
     CDS             1307..1945
                     /locus_tag="VGN19_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit B"
                     /protein_id="HEV7194418.1"
                     /translation="MALTREQMAARAALELSDGAYVNLGIGLPTLVPNYVPDDVEIVL
                     QSENGILGVGAYPFDGEEDPDLINAGKETVTLRKGSSFFDSATSFGMIRGGKVDAAIL
                     GAMQVSASGDIANWMIPGKMVKGMGGAMDLVHGAKKVIVLMEHNAKDGSYKIVDECSL
                     PFTGRGVVQRIITDLCVFDVTSSGLVLRELADGVTEDEVRERTEPDFRTDLA"
     gene            complement(1997..4042)
                     /locus_tag="VGN19_00630"
     CDS             complement(1997..4042)
                     /locus_tag="VGN19_00630"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HEV7194419.1"
                     /translation="MKGSIRHRGLRGLLASAVALTAVMSCSSAARADEVYPMTSDGIL
                     HLHGHGWGHGHGMSQYGAQGAALAGLHWQDILAFYYQHATLTNIANPLLRVSVPQVVH
                     NGVIQVKATPTLRLSWGQGTWAPVGSQYPTATAWRIRATGTNTSVVEYQKTDTPAGTW
                     STYGPTPGGYAVFDDPTSGCGIADPAGATTCVTAQLWTGTRIRYRGQLRGVMSGSTLV
                     PVLALPMEDYLKSVVPSESPSYWALDALGAQAVAARSYADYAISHPRSPLYDICDSTS
                     CQVFKGTTVNDSPSEYKNSTDAVAATAGTVLTYGGSVIFAEFSSSNGGWSAYGGQPYL
                     LARADPYDGTPTNSNHSWDADIAVSQIQSQWPQIGAYRDLRITQRDGNGDWGGRVVSA
                     VVEGSGGSVTVSGTQFEWAFGLNSEWFVPYNPPSAPSFPRDFTNDGYADVLAVDAASG
                     RLRIYPGNGAGGWKTPIVLGAGWGSLPKVFTAGAWDGDSVSDVMTQTGDGSLWLYSGT
                     ASGGLTGPRKIGSQWQVHDTVFATGDFNGDGWSDLLARRASDGALFLYAGDGQGGFRY
                     AQQIGSGWGAFTALFSPGDFDGDGHPDVIGRAADGTLWLYPGNGSGGWKARRLIGTGW
                     NGFTTIMSPGDFDGDGHPDVFGAKPDGTLWLYPGDGAGGWHAPRVVGSGWNGMSILR"
     gene            complement(4213..>5721)
                     /locus_tag="VGN19_00635"
     CDS             complement(4213..>5721)
                     /locus_tag="VGN19_00635"
                     /inference="COORDINATES: protein motif:HMM:NF042625.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6541 family protein"
                     /protein_id="HEV7194420.1"
                     /translation="FYPPVFHAIAGLVVMVSGCSPIAAANVVAVALAAVMWPLSMMLL
                     VRTVVGPSRFALAFSMGAVSVISVFPALLVSYGVLWPNALSYSILPGALALAVLLLRQ
                     TRFRWAGSVQAGLALAVVAPALYYSHPGAAFALLAVGLPLLVAAELGLLVVSWGERRR
                     RLMAIALCVLTAGALSIFWNGLYHLKALNQVRAFDWHPRQTASQAVGEALLLTSSLSS
                     GVAVIGVLVVVGAVWAFRYRSARWLPFSHTIIVALCVISTSTESAIRPTLTGFWYNDG
                     FRLAGLLPLTGVPLAALGALWTRTWLVGHVRVLATRQPLSLSPALARGMLRWSQTVAA
                     GVLAVAVVVLLPTTNPLTPVVSTVRSFYANFPDPLVTPDEAALYRRIAQWSPPGTDIL
                     GSPWTGSAFAGVLSGRQVVFPHMVTTNDAPRILLKKSFDQFTTDPAVCRAVKALHVGI
                     VVDDSRKFAPAGSAGAIAEYTGLSHLATTKGLTLLGHSQTASVYRVGSCSTG"
BASE COUNT          975 a         1962 c         1969 g          815 t
ORIGIN      
        1 tcggtgagcc cgctgtcgca gttgcgcgtg atgccgccgg tgttgccgac cttgtagtac
       61 gtcgtcatga gcgtggcgaa ggcgagcacg cccggcttgg cgacggggtc acagatgctc
      121 tgcggctcgt acggcgaggc cgcgtcgaga gcgctcggca gggccttggt cggcggcttg
      181 ggcagggtgg ccgcctgggc ggtgcccgcc atggcgatgg cgatcggcac cgtcaggacg
      241 gggatcgtga cgaccccgat ggctcggtcg agctggaaca cgtacttctc ctgggctggc
      301 gcgcggggtg gtgcgcggtg cgacatggac accagccaca gaggtcactc ctgcagcagg
      361 cctgtcagtt gtcccatttg ttcactgctg tcacaagtgc ttggcgtgaa ctacaaccgc
      421 ggaattctga atggactcaa ccaatcggac gaggacccgc ccctgggcgg ccccacgtgg
      481 ccgacggata gagtccacgc catggacaag gtcgtctcct cagcagccga ggccatcgac
      541 gggatcgtcg atggttcctc cctcgccgtg ggcggtttcg ggttgtgcgg catcccgagc
      601 gtgctcatcc gcgccatcca cgacgcgggc atgagagatc tcgaggcgat ctcgaacaac
      661 tgcggcgtgg acgactgggg cctgggcatc ctgctgcggg acaagcgcat ccgtcgcatg
      721 gtctcctcct acgtcgggga gaacaaggag ttcgagcggc agtacctcaa cggcgagctc
      781 gaggtcgagc tcacccccca gggcacgctc gccgagcggc ttcgcgccgg tggcgccggc
      841 ataccggcct tctacacgat caccggggcc ggcacccagg tcgccgacgg cggactgccc
      901 tggttgtatg ccgcggacgg taccgtcgcg aagtcctcac cgcgcaagga gaccaaggtc
      961 ttcgacgtgg acgggacgga ccgggagttc gtcctcgagc gggccatcgt cgccgacttc
     1021 gggctggtcc gggccttgaa gggcgaccgg cacggcaacc tcgtgttcga caagagcgcc
     1081 cgcaacttca acccgctgtg cgccatgtcc ggccgggtca ccgtcgctga ggtcgaggag
     1141 ctcgtcgagc ccggcgagct cgaccccgac caggtccacc tgcccggtat ctacgtgcac
     1201 cgcgtgctcc ccctcacgcc cgagcaggcc gcgcagaagc ggatcgagcg ccggaccgtg
     1261 cgcccccgtc cgaccaccac cgccaccacc agtctggaga actgacatgg cgctgacccg
     1321 tgagcagatg gccgcccgcg ccgccctgga gctgtccgac ggcgcctacg tcaacctggg
     1381 catcggcctg ccgaccctcg tccccaacta cgtccccgac gatgtcgaga tcgtgctgca
     1441 gtccgagaac gggatcctcg gcgtgggggc ctaccccttc gacggggagg aagaccccga
     1501 tctgatcaat gccggcaagg agaccgtgac gctgcgcaag ggctcctcct tcttcgactc
     1561 ggccacgagc ttcgggatga tccgcggcgg caaggtcgac gccgccatcc tcggggccat
     1621 gcaggtgtcc gcgtccggtg acatcgccaa ctggatgatc cccggcaaga tggtcaaggg
     1681 catgggcggc gcgatggacc tggtccacgg cgccaagaag gtcatcgtcc tgatggagca
     1741 caacgccaag gacggctcgt acaagatcgt cgacgagtgc tcgctgccgt tcaccggccg
     1801 gggcgtggtg cagcggatca tcaccgacct gtgcgtcttc gacgtcacgt cctcagggct
     1861 ggtcctgcgc gagctcgccg acggggtcac cgaggacgag gtgcgggagc ggaccgagcc
     1921 ggacttccgg actgacctcg cctgagcggc ccctgccgca ctcggcgagg agggccggct
     1981 gcgtcacggc ggatcgtcag cgcaggatcg acatgccgtt ccacccggag ccgacgacgc
     2041 gcggggcatg ccagccgccc gccccgtcac cggggtacag ccacaaggtg ccgtcgggct
     2101 tcgctccgaa gacgtccgga tggccgtcgc cgtcgaagtc gcccggggac atgatggtgg
     2161 tgaaaccgtt ccaccccgtc ccgatcagac gacgagcctt ccagccgccg gagccgttcc
     2221 ccggatagag ccacaacgtc ccgtcagcgg cgcgcccgat gacgtcggga tggccgtccc
     2281 cgtcgaagtc gccgggtgag aacaacgccg tgaacgcacc ccagcccgat ccgatctgct
     2341 gggcgtaccg gaagccgccc tggccgtctc cggcatacag gaacagggct ccgtccgacg
     2401 cgcgtcgcgc cagcaggtcc gaccagccgt cgccgttgaa gtcaccggtg gcgaacaccg
     2461 tgtcgtggac ctgccattgg ctaccgatct tgcgggggcc ggtcagaccg cccgaagcgg
     2521 tgcccgagta cagccataac gagccgtcgc ccgtctgcgt catcacatcc gagaccgagt
     2581 caccgtccca ggcgccagcg gtgaacacct tcggcaacga accccagccg gcccccagga
     2641 cgatgggggt cttccacccg ccggctccgt tgcccgggta gatccgcaac cggccgctgg
     2701 ccgcatcgac ggccagcaca tcggcatacc cgtcgttggt gaagtcgcgg gggaacgatg
     2761 gggcggacgg cgggttgtac gggacgaacc actccgagtt gagaccgaag gcccactcga
     2821 actgcgtgcc ggagaccgtc accgagccac cggagccttc gaccacagcg ctcacgactc
     2881 gaccgcccca gtcaccgttg ccgtcccgct gggtgatccg caggtcccgg taggcgccga
     2941 tctggggcca ctggctctgg atctgggaga ccgcgatgtc ggcgtcccag gagtggttgg
     3001 agttggtcgg ggtgccgtcg tacggatccg ctcgcgccag caggtacggc tgaccgccgt
     3061 aggcgctcca ccccccgttg gaggaggaga actcggcgaa gatcacggat ccgccgtagg
     3121 tgaggaccgt acccgccgtc gcggccaccg cgtcggtgga gttcttgtac tcgctgggac
     3181 tgtcgttcac cgtggtccct ttgaacacct ggcagctcgt ggagtcgcag atgtcataca
     3241 aggggctccg cgggtgcgag atggcgtagt cggcgtagct gcgtgcagcc acggcctgcg
     3301 cgccaagggc gtccagcgcc cagtacgagg ggctctcgct ggggaccacg ctcttgaggt
     3361 agtcctccat cggcagggcc agcactggga cgagggtcga gccggacatc acccccctga
     3421 gctgtccgcg atatctgatc cgggtgccgg tccacagctg ggcagtgacg caggtggtcg
     3481 caccggcagg atcggcgatc ccgcaaccgg aggtcgggtc gtcgaacacg gcatagccac
     3541 ccggagtcgg accgtacgtc gaccaggtcc cggccggggt gtcggtcttc tggtactcga
     3601 ccacgctggt gttggtgcca gtagcccgga ttcgccaggc agtcgcggtg gggtactggc
     3661 tgccgaccgg ggcccaggtc ccctggcccc acgacagccg cagcgtcggt gtggccttga
     3721 cctggatcac cccgttgtgg accacctgcg ggacgctgac ccgcaggagc gggttggcaa
     3781 tgttggtcag ggtggcgtgc tggtagtaga aggccaggat gtcctgccaa tgcaggccag
     3841 ccagagcagc tccctgagcc ccgtactggg acatcccgtg gccgtggccc caaccgtggc
     3901 cgtgcagatg caggatcccg tccgaggtca tgggatagac ctcgtccgcc cgggccgccg
     3961 aggagcacga catcacggca gtcagcgcga ccgcgctcgc caggagtccg cggagaccgc
     4021 ggtgccggat agaacccttc acctctgtat cccctctcgc gtaccccgat gaccaacgcc
     4081 cttggggcgc gatctcctac tgtgcccgaa gtcgtttccc gccgtggcaa aatcgggaat
     4141 tatccaccac aagttgattc ctgaccctcc cgacacaccg agccaccccc cgagacaccc
     4201 gcgagacacc gctcagccgg tcgagcagct tccgacccga tagaccgacg cggtctggga
     4261 gtgacccagc agggtcaggc ccttggtggt ggcgagatgg ctcagacccg tgtactcggc
     4321 gatcgccccg gccgacccgg cgggggcgaa cttgcgtgag tcgtccacca cgatcccgac
     4381 atgcagcgcc ttcaccgcgc ggcataccgc ggggtcggtg gtgaactggt cgaaggactt
     4441 cttcagcaga attcgtggcg cgtcgttcgt ggtcaccatg tgggggaaga ccacctggcg
     4501 tccgctcagc actccggcga acgcactgcc ggtccacggg ctgcccagga tgtccgtccc
     4561 ggggggactc cactgggcga tgcgccggta gagcgcggct tcgtcagggg tgacgagcgg
     4621 gtccgggaag ttggcgtaga aggaccgcac cgtggacacc acgggggtca acgggttggt
     4681 cgtgggcagg agcaccacga ctgcgacggc gaggacgccg gcggcgacgg tctgggacca
     4741 gcgcagcatc ccgcgcgcca gcgccggaga cagcgagagg ggctgccggg tcgccaagac
     4801 ccggacgtgc ccgaccagcc acgtgcgggt ccacagcgca ccgagcgcgg ccagcggaac
     4861 ccccgtgagc ggcagcagcc cggccagccg gaacccgtcg ttgtaccaga acccggtgag
     4921 cgtcggccgg atcgcgctct cggtggaggt gctgatcacg cacagggcga cgatgatggt
     4981 gtgggagaag ggcaaccacc gcgcggagcg gtaacggaac gcccacaccg cgccgacgac
     5041 caccaggaca ccgatcacgg cgaccccgct cgacaggctg gaggtcagca ggagcgcttc
     5101 gcccacggcc tgggacgcgg tctgacgtgg gtgccagtcg aaagcccgga cctggttcag
     5161 cgccttgagg tggtacaggc cgttccagaa gatcgacagc gcaccggctg tcagcacgca
     5221 gagcgcgatc gccatgagac gccggcgccg ctccccccag ctgacgacca gcaggcccag
     5281 ctcggccgcg acgagcaggg gcaggccgac cgccagcagg gcgaacgccg caccggggtg
     5341 ggagtagtac agcgcgggcg cgaccaccgc cagggccagt ccggcctgca cactgcctgc
     5401 ccagcggaac cgcgtctgtc gcaggagcag gacggcgagg gcaagggcgc cgggcagaat
     5461 cgagtagctc aaggcattcg gccacagcac gccgtacgac accaggagcg ctggaaagac
     5521 cgagatgacc gagaccgcgc ccatgctgaa cgcgagcgcg aagcgggacg ggcccaccac
     5581 cgtgcgcacc agcagcatca tcgacagcgg ccacatcacc gccgcgaggg ccacggccac
     5641 gacgttggcc gcggcgatcg ggctgcagcc cgacaccatg accaccaacc cggcaatggc
     5701 gtggaacacc ggggggtaga a
//
LOCUS       DASYFY010000032         2466 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1105385, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000032 DASYFY010000000
VERSION     DASYFY010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105385"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..164)
                     /locus_tag="VGN19_00640"
                     /pseudo
     CDS             complement(84..164)
                     /locus_tag="VGN19_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011345585.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(611..2005)
                     /locus_tag="VGN19_00645"
     CDS             complement(611..2005)
                     /locus_tag="VGN19_00645"
                     /inference="COORDINATES: protein motif:HMM:TIGR02946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase family
                     O-acyltransferase"
                     /protein_id="HEV7194421.1"
                     /translation="MRRLSGLDASFLALDGPSSSGHICLVATLDRPVSPAVLRATLVA
                     RLPSLPVLRQRLVPIPFGLDRPYWALDPDFDLDHHLSETIVEPGAEALGRAVATIAES
                     RLPRDRPLWEIHLLSGAVNALVTKIHHALVDGVAGRELLSTLLDDTPVRPAAVDDTPP
                     QPIPGQLEMLARGLFGLADVPATVLRLEGLVAARLPELALWPAEHASAQTIEWLTSGT
                     EPDPPRVPRGTVAPATPFNRAITPRRSWAGTTLSVDASKATRKNFGATVNDIVLAATA
                     GALRRWLLERDALPAEPLRALVPVSVRAGGETQDGNHIALMTCALPTDLAEPEKRLRA
                     VRQATLAAKARHALSARTLQDLSRIAVPALATRASGLIARTRLASRVRLPINLVISNV
                     PGPEQPYRVGGALVEGLYPVPALSDGLGVTITVQGYRRLLHVGITACPDLVPDVESLA
                     HHIETAHEEMVTLG"
     gene            complement(2002..>2466)
                     /locus_tag="VGN19_00650"
     CDS             complement(2002..>2466)
                     /locus_tag="VGN19_00650"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HEV7194422.1"
                     /translation="VNETCHFMVRVDRDVRFLASAEAGQALRISSRAGQVMPAHHASG
                     GKALLAELPPTDLDALYPSAGVPENGLGTADVDRLRRELQTVRRRGYAVNVGETERGI
                     AAVAVTIRDGDHQAIGAISVSVPTVRYSSRRIPELLDGLRTTADAIRADLQP"
BASE COUNT          343 a          816 c          901 g          406 t
ORIGIN      
        1 cgggtccgga gttgtcggtg accacccgtc ttcgtgcgct tcccgtaacg ggagttgctc
       61 cggttctggc cctccggtgc acccttgtcg tggccgaggt gctcgctcat ctccccatcg
      121 agcgcggcct cgaccactat cttggtcatg tgcttcagca gcccacccgg gcccgtcaac
      181 gacgtgccgc tggcgcaggc ctggcgcgct agctcccgga ctgtgtcctg ctccgccggc
      241 gtcagcggcg gcagctgctc cggtggttcg ccggatcgtg gtgggctcac atccaccagt
      301 gtcaccgtgt tctcggtcat ctcgaccctc ccgccctacc gggcgatcag gccactcacc
      361 gttgtcgcga ttgtccctcc cgatgcgcgt ggacagactc gagccgtcgg cctggccgca
      421 agggaacgcc tgggctggca agggctccag gctgagtcac tgtgcgtcga gaacggtcac
      481 gtccgtgatt gtcatcgtca gcggaccccc tcaaccgcac ggtgttcgca gcggtcgttg
      541 aatgcgccaa cgcctcaggg tcaggactcg gttcaaggcg agcggtcacg ctgtgggtgg
      601 cgcgacgaat tcagccgagc gtcaccattt cctcgtgagc tgtctcaatg tggtgtgcga
      661 gcgactcgac gtcgggcacg aggtcggggc aggcggtgat tccgacgtgg aggagtcgtc
      721 ggtatccctg cacggtgatg gtgactccca ggccgtcgct gagcgcgggc acggggtaga
      781 ggccttcgac gagcgcgccc ccgacacggt acggctgctc aggcccggga acgttagata
      841 tgacgaggtt gatgggcagc cgaacccggc tggccagccg ggttcgcgcg atgagaccgg
      901 atgccctggt cgccagggcc ggaaccgcga tacgcgagag gtcctgtagc gttcgggcgc
      961 tgagcgcgtg ccgagccttg gcggccaagg tggcttggcg cacggcccgc agtcgtttct
     1021 caggctcggc gaggtcggtg ggcagtgcgc aggtcatcag cgcaatgtgg ttcccatcct
     1081 gagtctcgcc cccggcgcgc accgacacgg ggaccagtgc ccgcaacggc tcggccggca
     1141 gcgcgtcacg ctcgaggagc catcttcgca acgcaccggc ggtggccgcg aggacgatgt
     1201 cgttgaccgt cgcgccgaag ttcttacggg tggctttgga cgcgtcgacg gacagggtcg
     1261 tcccggccca ggagcggcgg ggggtgatgg cgcggttgaa gggcgtcgcc ggcgcgacgg
     1321 tgccccttgg aactcggggc gggtccggtt cggttccgct ggtcagccac tcgatggtct
     1381 gcgccgaggc gtgttcggcc ggccagagcg ccagctccgg cagtcgtgcg gcaacgagcc
     1441 cctcgaggcg caggaccgtg gccgggacgt cggccagccc gaacaggccg cgcgccagca
     1501 tctccagctg gcccgggatc ggttgcggtg gcgtgtcgtc gaccgctgcc ggccggactg
     1561 gcgtgtcgtc gagaagcgtt gacagcagct ctcgaccggc gacgccgtcg acgagggcgt
     1621 ggtggatctt ggtgaccaac gcgttgaccg ccccgctgag caggtggatc tcccagaggg
     1681 gtcgatcgcg cgggagccgg ctttctgcga ttgtcgcgac ggcccgccca agtgcttccg
     1741 caccgggttc cacgatggtc tctgagaggt ggtggtcgag gtcgaagtca gggtccagcg
     1801 cccagtaggg ccggtccagc ccgaacggga tcggcacgag ccgctggcgc agtaccggca
     1861 ggctggggag cctcgcgacc agggttgccc gtaggacggc gggcgacact ggtcggtcga
     1921 gggtggcgac caggcagatg tggccactgc tggatgggcc gtcgagcgct aggaacgagg
     1981 cgtcgaggcc gctcagccgc ctcacggctg caggtcggcg cggatggcgt cggcggtcgt
     2041 gcgcagcccg tcgaggagct ccggtatgcg acgggacgag taccgcacgg tgggcactga
     2101 gacggagatc gctccgatgg cctggtggtc gccgtcacgg atggtcaccg cgaccgcggc
     2161 gatcccccgc tcggtctccc cgacgttcac cgcatatccg cgccgccgca cggtctgcag
     2221 ctcgcgccgc agtcggtcca cgtctgcggt gccgagtccg ttctccggca cccccgccga
     2281 agggtagagc gcgtcgaggt cggtcggcgg cagctcggcc agcaacgcct tgccgccgga
     2341 agcgtggtgc gcaggcatga cctggcccgc tcgcgagctg atccgcaatg cctgaccggc
     2401 ctcggcgctg gccaggaacc ggacgtcgcg gtccacccgc accatgaagt ggcaggtctc
     2461 attgac
//
LOCUS       DASYFY010000033         6512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1788639, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000033 DASYFY010000000
VERSION     DASYFY010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6512
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1788639"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VGN19_00655"
     CDS             <1..526
                     /locus_tag="VGN19_00655"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HEV7194423.1"
                     /translation="NICRSPMGEFILRERFEAARIGGRVVVESAGTHSWEVGSPADPR
                     TLAVLARHGHPDFGRVDHVARTFQREWVDEVDLILAADSGHRRHLLKLARTDEQRAKV
                     QMFRSFDPEAARTGQLDMADPWYGDDEAFERTYAEVTAAADGVVEHVWRELARAAQTF
                     YPATRREGKPLFKS"
     gene            complement(751..1785)
                     /locus_tag="VGN19_00660"
     CDS             complement(751..1785)
                     /locus_tag="VGN19_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012298028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEV7194424.1"
                     /translation="MRYTTLGSSGTVVSTLCLGTMTFGAEADERASGAVLDAYVEAGG
                     TFVDTADVYSAGASEEIIGRWLAAHPTEARQLVVATKGRFPMGAGPNDLGLSRRHLRM
                     ALEDSLRRLGVDHIDLYQLHAWDALTPIEETLRFLDDAVSAGHISYYGFSNYLGWQVT
                     KAALTAQAKGWTAPVTLQPQYNLLVRDIEHEVVPACLDAGLGLLPWSPLAGGWLTGKY
                     QRDVAPEGESRLGDDPERGMEAWGPRNQEQHTWAVVDAVGAVADELGATSAQVALAWV
                     AAQPAVTSVILGARTVEQLSDNLGAADLELPQSALARLDEVSMPRMADYPYGRAGVQQ
                     RHRAIASGND"
     gene            1919..3328
                     /gene="purB"
                     /locus_tag="VGN19_00665"
     CDS             1919..3328
                     /gene="purB"
                     /locus_tag="VGN19_00665"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEV7194425.1"
                     /translation="MASLADATPPIALGALDGRYRPTVAPLVDHLSEPALNRERIHVE
                     VEWLIYLTTHQVVPGVRTLTETEQGELRAVVRDFGADEIAELAEIERETQHDVKAVEY
                     FLKRRLSLIAPAEQDRGLAELIHFCCTSEDVNNLSYALMVQGAVTQVWLPRATGLVEA
                     VATMASDLRDVPLLAHTHGQPATPTTMGKELAVLAHRMDRQLRRIASAEYLGKLNGAT
                     GTFGAHLAAVPDADWPTLSREFVESLGLQWNPLTTQIESHDWQAELYADLARFNRVLH
                     NLCTDVWTYISLGYFAQVRGQGTVGSSTMPHKVNPIRFENAEANLEVSNALFDVLGST
                     LVTSRLQRDLTDSSMQRNIGVAFGHSVLAIDNASRGLAGLDAVPAAMAADLDANWEVL
                     GEPIQSAMRALGAQGVAGMENPYERLKELTRGRRITGDDLRAFVAGLGLPDDVAKRLA
                     AMTPASYVGVAPQLVDYLD"
     gene            complement(3703..4338)
                     /locus_tag="VGN19_00670"
     CDS             complement(3703..4338)
                     /locus_tag="VGN19_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019310086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194426.1"
                     /translation="MRVDHVSYAAEQDGLRATAERLSQRIGVEPVDGGIHPRFGTRNV
                     ILPLAHDRYVEIVEVLDHPASDKAPFGQAVRARSEAGGGWLGWVIAVDDIATVELRIG
                     RHAVDGNRYRPDGVELKWRQVGVNGLISDPQLPFFVQWADQTVHPSVGAHTEVTIDGL
                     QIAGDPERVREWLDLPPHEVSTVIDFTFVSPHGTPGLMAVTFDTPGGKVTI"
     gene            complement(4387..5208)
                     /locus_tag="VGN19_00675"
     CDS             complement(4387..5208)
                     /locus_tag="VGN19_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEV7194427.1"
                     /translation="MPDLLISSPANPRLKSLTALRRRRTREELGRTLVEGFEEVSLAL
                     EAGVLPQALFYCPELMLDPATQSEVVDRVRGQGVETVQVTRAAFEKAAYREGPDGFLA
                     VVPSVTRSCAELQVGPSALTVLCEGVEKPGNLGAMLRTADAAGAEAVIAADPVTDWGN
                     PNLVRASKGTVFSVPVASDPTPDVLRWLDARGIALVATTPDTELDYTDVDYTGPVAIA
                     VGAEKYGLTDRVLEHAAYRVRIPMVGRANSLNVATSAAIVIYEAVRQRRRSASPH"
     gene            complement(5228..6022)
                     /locus_tag="VGN19_00680"
     CDS             complement(5228..6022)
                     /locus_tag="VGN19_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEV7194428.1"
                     /translation="MTVPHLVALDLDGTTINHAGELSPAVREAVQEVVAAGHHVIIST
                     GRSIVATTTVLDELGISSGYAVCSNGAVTLLLDPLEHQGFRILEAVTFDPAPALELLR
                     SEWPDAVVAVEELGVGFKLSAPFPNGELQGELRVVPWEELVAEPVTRVTFRAPNGTAE
                     DFLALTERIVLHGVSYAVGFSAWLDLNPEGVSKGSALELLRRRLQIDPQYTVAVGDQR
                     NDIEMLHWAARGVAMGNAPDSVKAIADEVTLDVDDDGLVPVLRTLL"
     gene            complement(6033..>6512)
                     /locus_tag="VGN19_00685"
     CDS             complement(6033..>6512)
                     /locus_tag="VGN19_00685"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HEV7194429.1"
                     /translation="VAEMMNALFDPTMTMRDLEWVRSQWEGPLVVKGIQTVADAQAVF
                     DAGADAIVLSNHGGRQLDRAPVPVRLVPQVREALGPDREILVDTGVMSGADIVAAIAL
                     GANGVLVGRAYLYGLMAGGEQGVQRAVDILTAEIRRTMALLGAPRIADLGPAHVRLP"
BASE COUNT          988 a         2280 c         2264 g          980 t
ORIGIN      
        1 aaacatctgc cgctccccga tgggcgagtt catcctgcgc gagcgctttg aagccgcgcg
       61 gatcggcggc cgggtcgtcg tcgagtccgc cggcacgcac tcctgggagg tcggcagccc
      121 agccgacccg cgaaccctcg ccgtcctggc tcgccacggt cacccggact tcggccgggt
      181 ggaccacgtc gctcgcacgt tccaacgcga gtgggtcgac gaggtggacc tgatcctggc
      241 tgccgacagt ggccaccgac ggcacctgct gaagctcgcc cggacggacg agcagcgcgc
      301 gaaggtgcag atgttccgct cgttcgaccc ggaggcggct cgcactggac agctggacat
      361 ggcggacccc tggtacggcg acgacgaggc gttcgagcgc acctatgcgg aggtgacggc
      421 cgcggcggac ggggtggtcg agcacgtatg gcgcgagctg gcgcgagcgg cgcagacctt
      481 ctacccggcc acacgtcggg aaggcaagcc cctattcaag tcctgaatag ctgtttgggc
      541 ccggccggtt caccgtgagc aaatggctcc aggcaagtgg cctcccgtgc caccagccca
      601 ggcgggtagc cggcagtcgt cggtgcggtt cgtgcctcgt ggcgcaccga cgcggcatac
      661 ccaccgctgc ggccaccacc gggtccccct tcggtggtgg ccgctcacct gctcctagcc
      721 ctggtctgtt cctggcctcg tcgccggacg tcagtcgttt ccggacgcga tcgcccggtg
      781 gcgctgctgg accccggcgc ggccgtaggg gtagtcggcc atcctgggca tgctcacctc
      841 gtcgaggcgc gcgagcgcgg actggggcag ctccaggtcc gccgccccca ggttgtcgct
      901 gagctgctcg accgtgcgcg cgccgaggat cacagaggtc accgcgggct gtgcggccac
      961 ccaggccagc gcgacctgtg ccgaggtggc tccgagctcg tcggctacag caccgaccgc
     1021 gtcgaccacg gcccaggtgt gctgctcctg gttgcgcgga ccccacgcct ccatgccgcg
     1081 ctcgggatca tcgcccaagc gcgactcgcc ctcgggtgcg acatcgcgct ggtacttccc
     1141 ggtcagccag ccaccggcca gcggcgacca gggcaacagc cccagccccg catcgagaca
     1201 ggccggaacc acctcgtgct cgatgtcgcg caccaggagg ttgtactgcg gctgcagggt
     1261 gactggagcg gtccacccct tcgcctgggc cgtcaacgcc gccttggtga cctgccagcc
     1321 cagatagttc gagaacccgt agtacgagat gtgaccggcg gataccgcgt catcgaggaa
     1381 gcgcaaggtc tcctcgatcg gtgtcagggc gtcccaggcg tgcagctggt agaggtcgat
     1441 gtggtcgacc cccaggcgcc gcagcgagtc ctcaagagcc atgcgcaggt gccgacggga
     1501 cagcccgagg tcgttcgggc cggctcccat gggaaaccgt cccttggtcg cgaccacgag
     1561 ctggcgagcc tcggtcggat gagcggccaa ccagcggccg atgatctcct cagaggcgcc
     1621 ggcgctgtac acatcggccg tgtcgacgaa ggtgcccccc gcttcgacat aggcgtcgag
     1681 gacggctccc gaggcccgct cgtcggcttc ggcgccgaac gtcatggtgc cgaggcagag
     1741 cgtggagacg acggtgccgc tggatcccag cgtggtgtag cgcatgggct ccaccgtatg
     1801 ccgccggcgg tcacccggca tccctgcgac caggcccacc tgcgccggaa cctgggccca
     1861 gctgtgcccg gaataccggt gtccggcgcg accgtcccgc tctgggagac tgtgcgccat
     1921 ggcttcgctt gcagacgcga ccccgcccat cgctcttggc gcgctcgacg ggcggtatcg
     1981 acccacggtc gcaccgctgg tcgaccacct gtccgagccg gcactcaatc gcgagcgcat
     2041 ccacgtcgag gtggagtggc tcatctacct cacgacccac caggtcgtgc ctggcgtccg
     2101 gacgctgacc gagaccgagc aaggcgagct ccgggcagtc gtgcgggact tcggcgcgga
     2161 cgagatcgcc gagctcgcgg agatcgagcg cgagacccag catgacgtca aggccgtgga
     2221 gtacttcctc aagcgccgcc tctcgctgat cgcgccggcc gaacaggacc gcgggctcgc
     2281 cgagctgatc cacttctgct gcaccagcga agacgtcaac aacctgtcgt acgccctgat
     2341 ggtccagggc gccgtgacgc aggtgtggct cccgcgggcc accggcctcg tggaggcggt
     2401 cgcgacgatg gcctccgacc tgcgcgacgt cccgctgctc gcgcacaccc acgggcagcc
     2461 ggcgacgccc accaccatgg gcaaggagct cgcggtgctc gctcatcgga tggaccgcca
     2521 gctgcgacgg atcgccagcg ccgagtacct cggcaagctc aacggtgcga cgggtacgtt
     2581 cggcgcgcac ctggccgccg tgcccgacgc ggactggccc acgctcagcc gtgagttcgt
     2641 ggagtcgctg ggactgcagt ggaacccgct gaccacccag atcgagtcac acgactggca
     2701 ggccgagctg tatgccgacc tggcgcgctt caaccgggtg ctgcacaacc tctgcacaga
     2761 cgtgtggacg tacatctcgc tcggctactt cgcgcaggtg cgcggccagg gcaccgtggg
     2821 ctcctcgacc atgccccaca aggtcaaccc gatccggttc gagaacgccg aggccaacct
     2881 cgaggtcagc aacgcgttgt tcgacgtgct cggctcgacc ctggtcacca gccgcctcca
     2941 gcgcgacctg accgactcct cgatgcagcg caacatcggc gtggctttcg ggcactcggt
     3001 gctggcgatc gacaacgcca gtcgcggtct tgccggcctg gacgcggtcc cggcagccat
     3061 ggccgcggat ctcgacgcca actgggaggt gctgggcgag ccgatccagt cggcgatgcg
     3121 ggccctcggt gcgcagggcg tcgcggggat ggagaacccc tacgagcgac tcaaggagct
     3181 gacccggggc cggcgcatca ccggcgacga cctgcgggcg ttcgttgcgg gcctgggact
     3241 gcccgacgac gtggcgaagc ggctggcagc gatgacacct gcctcctacg tcggggtggc
     3301 accgcagctc gtggactacc tggactgatc agccgtggtc gcgctcgggt gggtcgtgtt
     3361 gactctggtc ttcgtcgacg aggtgctggc cgcagcggcg gctgccgtgt ggggagcaca
     3421 cgtccaaggg gttgctctcg gcatcgtcat ggtcgtggtc gtggtggccg tgtggtggac
     3481 cttcgcctcg ccgaaggcgc cgctcagtgg gcggatcgtc cgaccggtga ccaagatcct
     3541 ggtcttcgga ctggcgtcgc tgggtttgtg gtccagcggt caccccggct gggcgatggg
     3601 cttcctggcc ttctcggttg ccgtcaacgg cctggcccag ctgcggggcg tgcaggcgct
     3661 gggtgaccga cgcgccgcag gactgacctg cgggcctgcg ggtcagatgg tgaccttgcc
     3721 gccgggggtg tcgaaggtga ccgccatcag gccgggggtg ccgtgcggag agacgaacgt
     3781 gaagtcgatg accgtggaga cctcgtgcgg gggcaggtcg agccattccc ggacgcgctc
     3841 ggggtcaccg gcgatctgca gaccgtcgat cgtcacctcg gtgtgggcgc cgaccgaggg
     3901 atgcaccgtc tgatccgccc actgcacgaa gaacgggagc tgcgggtcgg agatcaggcc
     3961 gttgacgccg acctggcgcc acttcagctc gaccccgtcg gggcgatagc ggttgccgtc
     4021 gaccgcgtgg cgcccgattc gaagctccac cgtggcgatg tcgtcgacag cgatgaccca
     4081 ccccagccag cccccgccgg cctcggagcg tgcccgaacg gcctgcccga agggcgcctt
     4141 gtccgatgcg gggtggtcga ggacctcgac gatttcgaca taccggtcat gagccagggg
     4201 gaggatcacg ttgcgcgtac cgaaccgggg gtggatcccg ccgtcgacgg gttcgacacc
     4261 gatgcgctgc gacaggcgtt ccgccgtggc ccgcagaccg tcctgctccg ctgcgtacga
     4321 cacgtgatca actcgcatac ccgacatcgt ggcacacccc caggagtgct cttgacaggg
     4381 gtgcgttcag tggggcgagg ctgacctgcg gcgttgtctg acggcctcat agatcacgat
     4441 cgccgcggac gtcgcgacgt tcagggagtt cgcgcgaccg accatcggaa tccgcacccg
     4501 gtatgccgcg tgctccagga cccggtcggt gaggccgtac ttctcggccc cgactgcgat
     4561 cgcgaccggc ccggtgtagt cgacgtcggt gtagtccagc tccgtgtcag gcgtcgtggc
     4621 caccagcgcg atgccgcgcg cgtcgagcca ccgcagcacg tccggcgtgg ggtcgctggc
     4681 gacggggacg ctgaacacgg tgcccttgct ggcgcgcacg agattggggt tgccccagtc
     4741 ggtgaccggg tcggcggcga tgacggcctc ggcgccggcg gcgtcggcgg tacgcagcat
     4801 tgcgccgagg ttgccgggct tctcgacccc ttcgcagagc acggtcagcg ccgacggacc
     4861 cacctgcagt tcggcgcagc tgcgcgtcac ggacggcacc accgccagga agccgtccgg
     4921 cccctcgcgg taggccgcct tctcgaaggc agcgcgcgtc acctggaccg tctcgacccc
     4981 ctggccacga acgcgatcca ccacctccga ctgcgtcgcc ggatcgagca tcagctccgg
     5041 gcagtagaac agcgcctgcg gaaggacgcc ggcttcgagg gccagcgaaa cctcctcgaa
     5101 gccctcgacg agggtgcggc cgagctcttc ccgggtgcga cggcggcgca gcgcggtcag
     5161 cgacttcagc ctcgggttgg cgggcgagga gatcagcagg tcaggcatgg cggcgcccag
     5221 tctggcatca caacagcgtg cgcagcaccg ggacgagacc gtcatcgtcg acgtcgaggg
     5281 tgacctcgtc ggcgatggcc ttcaccgagt ccggcgcatt gcccatggcc acccctcgcg
     5341 cggcccagtg caacatctcg atgtcgttgc gctggtcgcc cacggccacg gtgtactgcg
     5401 ggtcgatctg gaggcgtcgt cgtaacagct ccagggcgga acccttcgag accccctccg
     5461 gattgaggtc cagccaggcg ctgaagccga cggcgtagct cacgccatgc agtacgatcc
     5521 gctcggtcag tgccaggaag tcctcggccg tgccgttggg cgcccggaag gtgacgcggg
     5581 tgaccggctc ggcgacgagc tcttcccagg ggaccacccg cagctccccc tgcagctcgc
     5641 cgttcgggaa cggggcgctg agcttgaacc cgacaccgag ctcctcgacc gcaaccactg
     5701 cgtcgggcca ctcggaccgg agcagctcga gcgccggtgc ggggtcgaag gtgaccgcct
     5761 ccaggatgcg gaacccctgg tgttccaacg gatccagcag gagggtgacg gcgccgttgg
     5821 agcacacggc atacccgctg gagatgccca gctcgtccag gacggtggtc gtggccacga
     5881 tggagcgccc ggtggagatg atgacgtggt ggccggcggc caccacctcc tggaccgcct
     5941 cccgcacggc tggtgacagc tcaccggcgt ggttgatcgt ggtgccgtcg aggtcgaggg
     6001 ccaccaggtg agggacggtc atgcgcccga gcctacggaa gccggacgtg tgccggaccg
     6061 aggtccgcga tccgaggcgc gccgagcagg gccatcgtcc ggcggatctc ggcggtgaga
     6121 atgtcgacgg cccgctgcac cccctgctcg ccgcctgcca tcagcccgta gagataggcg
     6181 cgccccacga ggacaccatt ggcgcctaga gcgatggccg ccacgatgtc cgcgccggac
     6241 atcacgccgg tgtcgacaag aatctcgcgg tcgggtccga gagcctcgcg cacctgcggc
     6301 acgagccgca ccggcactgg cgcgcggtcc agctgacggc cgccgtggtt ggacagcacg
     6361 atcgcgtcgg cacccgcgtc gaacaccgcc tgggcatccg cgaccgtctg gatgcccttg
     6421 accaccagcg gaccctccca ctgcgaacgc acccactcca ggtcacgcat cgtcatcgtg
     6481 gggtcgaaca gcgcgttcat catctcggcc ac
//
LOCUS       DASYFY010000034         1961 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1735844, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000034 DASYFY010000000
VERSION     DASYFY010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1735844"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1026
                     /locus_tag="VGN19_00690"
     CDS             <1..1026
                     /locus_tag="VGN19_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194430.1"
                     /translation="VAVGALLVVGVRRGWSMPLLAQAWLARTLAGGVVLVAGVLSSRP
                     LWQAVHQSAADPGSRVVATLQAAQGLRVDGGRTYAEQSVTWMSWWVGPVALVVAVLAT
                     ASLAHRAASAWVEGRELPPWMGAAVVGVGSTLLTLYRPGITPDHPWADRRLVIALPTV
                     VLLGVASAAVLSRWSTRRLPYAVMVTGSVLVSASLVIPAALATWPHATERVEGHELAA
                     VDQVCRQFRPGDVALMVDSRAVNEWPEVLRGYCGVPALATTFALRSNPVTFGVAVNRI
                     DRDLQARGETLVLVAADSTDSLSRLGLRSAVVGVDTHVLEDARLLERRPDHLVDLPLT
                     VWLGRTG"
     gene            1037..>1961
                     /locus_tag="VGN19_00695"
     CDS             1037..>1961
                     /locus_tag="VGN19_00695"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7194431.1"
                     /translation="MSLEFKAPTESDLDAIAEVRIRSFGPMSPAEAQRSRAANLELLA
                     QDRLFAVFDGRTLAGCGKARGFEQAWHGRLVPMAGMAGVTVLPEFRGRGVGTLLMRGL
                     AERCVTRGEPISALFPATVPVYRRLGWELVGGYHRYALPAAQLRTLGGSSGPPTQATS
                     ADVDRLMTICRDALSRGRSSGPLLWSRQGWERRLADPDEFVYLLDDGVLVYGWDGGEG
                     YDLRVDLLLAESEDTLRSLWSLVGSGSSIATTVFAYLSPDDPVFWVLPEEAGHEVKTH
                     GWMLRVLDVPGALASRGYARGAETELVLRVDD"
BASE COUNT          226 a          672 c          748 g          315 t
ORIGIN      
        1 gtcgcggtgg gtgccctgct ggtcgtcggc gtccgacgcg gttggagcat gcccctgctg
       61 gcgcaggcgt ggctggcgcg aaccctcgcc ggcggggtcg tcctggtcgc gggcgtgctc
      121 tcgagccggc cgctgtggca agcggtgcac cagtccgcgg ccgatcctgg ctcccgggtg
      181 gtggcgactc tgcaggccgc ccagggactg cgcgtcgacg gcggccgcac gtatgccgaa
      241 cagtcggtga cgtggatgtc atggtgggtg ggacctgtgg cgctcgtggt ggccgtgctc
      301 gcgaccgcga gcctggctca ccgggccgcg agcgcctggg tcgagggtcg cgagctgccg
      361 ccctggatgg gagccgcagt ggtcggggtg gggtcgaccc tgctgacgct ctaccgcccc
      421 gggatcaccc cagaccaccc ctgggccgac cgccgcctgg tcatcgccct gccgacggtg
      481 gtgttgctcg gggtcgcgag cgcggccgtg ctctcgcgat ggtccacccg ccgcctcccg
      541 tatgccgtga tggtcaccgg cagcgtgctg gtgtcggcct cgctcgtcat cccggccgcg
      601 ctggccacct ggccgcatgc cacggagcgg gtcgagggtc atgagctggc ggcggtcgac
      661 caggtgtgcc gacagttccg ccccggcgac gtcgccctga tggtcgactc gcgggcggtc
      721 aacgagtggc cggaggtgtt gcgtgggtac tgcggggtgc cggccctggc cacgacgttc
      781 gccttgcgca gcaacccggt caccttcggg gtggcggtca accggatcga ccgtgacctg
      841 caggctcgcg gcgagaccct ggtgctggtg gccgccgact cgacggactc gctgagccgc
      901 ctcgggctgc gcagcgcggt cgtgggcgtc gacacccacg tcctggagga cgccaggctg
      961 ctcgagcgac ggcccgacca cctcgtcgac ctgccgctga ccgtctggct gggccggacg
     1021 ggataggagc ctggtcatga gtctggagtt caaagccccg accgagtccg acctggacgc
     1081 gatcgccgag gtccggattc gctcgttcgg accgatgagc ccagctgagg ctcagcgctc
     1141 gcgtgcggcc aacctcgagc tgctggccca ggaccggttg ttcgcggtgt tcgacggccg
     1201 gaccctggcc gggtgcggca aggcacgggg tttcgagcag gcctggcacg gtcggctggt
     1261 gccgatggcc gggatggcag gcgtcacggt gctgcccgag tttcgcggcc ggggcgtcgg
     1321 gaccctgctg atgagagggc tcgccgaacg ctgcgtgact cgcggcgagc cgatctcggc
     1381 actgttcccg gcgaccgtgc ccgtctaccg ccggctgggc tgggagctgg tcggcggcta
     1441 ccaccgctac gcgttgcccg ctgcccagct acgcacgctc gggggcagct caggtccccc
     1501 cacccaggcg accagcgctg acgtcgaccg cctgatgacg atctgtcggg acgcgctgag
     1561 ccgcgggcgc agcagcggtc cgctgctctg gtcgcggcag ggctgggagc gcaggctcgc
     1621 cgaccccgac gagttcgtgt acctcctcga cgacggcgtg ctggtctacg gctgggacgg
     1681 cggtgagggc tacgacctgc gggtcgacct gctgctggcc gagagcgagg acaccctgcg
     1741 cagcctctgg tcgctcgtcg ggtccggatc atcgatcgcc acgacggtgt ttgcgtacct
     1801 ctcgcccgac gacccggtgt tctgggtgct gcccgaggag gccggccatg aggtgaagac
     1861 ccacggctgg atgctgcgag tcctcgacgt cccaggggcg ctggcgtccc ggggctatgc
     1921 gcgcggggcc gagaccgagc tggtccttcg ggtcgacgat c
//
LOCUS       DASYFY010000035         4801 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_107350, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000035 DASYFY010000000
VERSION     DASYFY010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4801
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107350"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            503..904
                     /locus_tag="VGN19_00700"
     CDS             503..904
                     /locus_tag="VGN19_00700"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEV7194432.1"
                     /translation="MPTETTLDDLADEKFVSLTTFRKNGVGVPTPVWIGRDGDALVVT
                     TPAGSGKVKRLRKNPTVELRPCSRRGTVEDDAPTVRAVAEVVQGDAAMRRLDEVLKPK
                     YSFEYRVVMSIERLLRRGSPQRVMLRISRVD"
     gene            complement(1275..2192)
                     /locus_tag="VGN19_00705"
     CDS             complement(1275..2192)
                     /locus_tag="VGN19_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7194433.1"
                     /translation="MTAPEPRPRDTVRAEIREFLSTRRARITPEQAGLPTYGDDRRRV
                     PGLRREEAALLVGVSPQYYIRLERGDATGVSDSVIDGIAHALRLDDAERAHLLDLFRT
                     AGTPARAMKRRPPAPTRVRPTIQRLVDSMPTVPAVVLNGRLDVLAVNPLCRALFSPWY
                     DADQPVNNARLVFLDPHATTLFRQWETVANDTVALLRAEAGRSPYDRQLSDLVGELST
                     RSEDFRIRWAAHDVRIHNTGIKKLHHAVVGDLDLPFESLPLEAGTSTNLVSYLPEPGT
                     PSYDALALLASWAATETASALKGPSDPRR"
     gene            2348..3250
                     /locus_tag="VGN19_00710"
     CDS             2348..3250
                     /locus_tag="VGN19_00710"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018774378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7194434.1"
                     /translation="MTDQTQTTKTNPGGDQATQPSQKQVWLVTGASRGLGIDIAKAAL
                     AAGHAVVATARNIESITRALGQHDQLLAVALDVTYPNAAQAAVAATIELFGHLDVLVN
                     NAGSFQAGFFEEMTPEAFRTQIETTLFGPVNVTRAALPQLRAQRSGLVMTISSTAGIG
                     SAGDFLTAYAASKFGVEGFMEALASEIAPFGIRTMLVEPGFVRTELLTPQSTQYAQPS
                     IADYADRTAATIQAWQGMDGKQGGDPAKLADALVQLATLDQPPARFAAGADAIELFET
                     KARTLLTQADAYRELSSSLAHDDA"
     gene            complement(3540..4286)
                     /locus_tag="VGN19_00715"
     CDS             complement(3540..4286)
                     /locus_tag="VGN19_00715"
                     /inference="COORDINATES: protein motif:HMM:NF025687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4386 domain-containing protein"
                     /protein_id="HEV7194435.1"
                     /translation="MATMTAPTTTHRPPVDWTRGNARAAGIFYLITFAASIPAAFYFL
                     APILNNPNYIVSSGADTRVLIGCLLDVVTALAGIGSAVAVFPVVRRQNESMALGFVTS
                     RMFEAAVIMVGVVSLLAVVTLRQGGATPADHGSLVNTGHALVAVRNYTFQFGPNLSAT
                     INGLLFGTLLYKSRLVPRVIPIMGLIAAPLLLVATVATVSGLTEQGSAWFAPGGALIF
                     VWELSVGIYMTVKGFKPSPITAAATEDRIA"
     gene            complement(4288..4569)
                     /locus_tag="VGN19_00720"
     CDS             complement(4288..4569)
                     /locus_tag="VGN19_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194436.1"
                     /translation="MSDSSASHPRDVGWYEIRLKGHLAPRWAASFDGLTLTPRDDGTT
                     VLHGPIVDQAALHGVLSKLRDLGLPLVSITQVHPDLAPPITPHTTPQGD"
BASE COUNT          760 a         1561 c         1708 g          772 t
ORIGIN      
        1 cctggcttcg acttggtccc tgaactcgtc cacacctaca ccttctcaag aacgcgcccc
       61 ccagttccat cgcgcctgca ccgtgaactc cgggcggcag gaggttcgcc caagggtagg
      121 ccgaagcggg tcacgcaaag ggcaccggtt cgcgcccgcc tgctcgcact cgccacccac
      181 gaccctcgcg cgctgggacg tcgacagcaa cgcgctcatc tgccgctgtc ggcgcgcgga
      241 actgccaatg acacgtcgcc caacgccaac ctgtgaccgg cgccaagtcg gcggacattc
      301 acgcgttgaa aagtcgtccg caaggtccgc ttcggagcag atttcacggt cgcttgcgtc
      361 gtcaacggtc cggagtcagg gatgccgggc ggggcactct cctcccgcgg gccgacgcca
      421 cgcctgtgca ggtagtcatt cggaccagca cgaccttcga cgcaccgcgg gcgggcccga
      481 gctcatccgg tagcgtcgcc tcgtgcccac cgagaccacg ctcgatgacc tcgccgacga
      541 gaagttcgtc tcgctcacga cctttcgcaa gaacggcgtc ggcgtcccga cccctgtctg
      601 gatcgggcgt gacggcgatg ccctcgtcgt gacgacaccg gcaggcagcg gcaaggtcaa
      661 gaggctgcgt aagaacccca cggtcgagct gcggccgtgc agccgtcgcg gcaccgtcga
      721 ggacgacgcc cccacggtca gggccgtagc cgaggtcgtc cagggcgacg ctgccatgcg
      781 ccggctcgac gaggtgctga agccgaagta ctccttcgaa taccgcgtcg tcatgagcat
      841 cgagcggctg ctgcgacgag ggagccctca gcgggtcatg ctgcgcatca gccgggtgga
      901 ctgaccggct ccgaggtcgt atcggacgaa cggccgccac gacgccgccc cccgcgccga
      961 ggccgaacgg agcgtatgca cgatgcgttg cgaagccttg gttccggaag ccgcgccgtc
     1021 cacctcctcc tcgctgggcg ggtgcagcac ggccaactgt gacggttctg ctgtgacgta
     1081 cgcccgccca ccgctcacgg gaaccatcgc cgtagcccat gcagcccagg gaatccggct
     1141 gaccttgagg ccggcggttc gtcgccctgt gtatttccat cctctccggc tcctctgccg
     1201 gcatcggctc tacctctggt aaacccgagc cacacgcttc gatctagcgg ctcttggtgt
     1261 agggcagtga tgactcagcg acgcggatcg cttggcccct tgagggcgga ggccgtctcg
     1321 gtggcggccc agctggcgag cagggcgagc gcgtcgtagc tgggcgtgcc gggctctggc
     1381 aggtagctga ccaggttggt gctggtgccg gcctctagtg gcaatgactc gaacggcagg
     1441 tcgaggtccc cgacgacggc gtggtggagc tttttgatgc cggtgttgtg gatgcggacg
     1501 tcgtgggctg cccagcggat ccggaagtcc tcactgcggg tggatagctc accgaccagg
     1561 tcggagagct gccggtcata ggggctgcgt cctgcctcgg cgcggagtag ggcgacggtg
     1621 tcgttggcga cggtttccca ctggcggaag agggtcgttg cgtgcgggtc gaggaacacg
     1681 aggcgggcgt tgttcacggg ctggtccgcg tcgtaccagg gcgagaacag cgcacggcat
     1741 agagggttga cggcgaggac gtcgaggcgc ccgttgagga ccactgcggg cacggtgggc
     1801 atcgagtcga caaggcgttg gatggtgggc cggacacggg tcggtgccgg cggtcggcgt
     1861 ttcatcgcgc gtgctggtgt gcccgcggta cggaacaggt cgagcaggtg tgctcgttcg
     1921 gcgtcgtcga ggcgcagcgc gtgggcgatg ccgtcgatga cgctgtcgga gacgcccgtg
     1981 gcgtcgccgc gttcgaggcg gatgtagtac tgcggggaga cgccgaccag cagtgcggcc
     2041 tcctcccgcc ggagccccgg cacccgtcgg cggtcatcac cgtaggtcgg caggcccgcc
     2101 tgctcagggg tgatcctggc ccgtcgggtg ctgaggaact cccggatctc agccctgacg
     2161 gtgtcccggg ggcggggctc cggtgcggtc atgtcgtcca ctgtacgaac gctgacgtcc
     2221 cggtgggggt ccctgtcagt ggctcccacg agagggactg ccgcaacttc ccgtgccctg
     2281 gttctctggt tgacggcgcc ccgtccgggg ccgccgaccg acgacccctg tcacggaagc
     2341 agcagcaatg accgaccaga cccagaccac caagaccaac cccggcggcg accaggccac
     2401 ccagccaagc cagaagcagg tctggttggt gaccggagcg agccgcggcc tgggcatcga
     2461 catcgccaag gccgccctgg ccgcggggca cgcggtggtc gccaccgccc gcaacatcga
     2521 gagcatcacc cgagccctcg gtcagcatga ccagctgttg gccgtcgccc tcgacgtcac
     2581 ataccccaat gctgcacagg cagcggtcgc ggcgaccatc gagctgttcg gtcacctcga
     2641 tgtcctggtg aacaacgccg gcagcttcca ggccgggttc ttcgaggaga tgaccccaga
     2701 ggcgttccgg acccagatcg agaccaccct cttcggcccc gtcaacgtga cgagggcggc
     2761 cctcccccag ctgcgggccc agcgctcagg gctggtgatg acgatctcct ccaccgccgg
     2821 catcgggtcc gccggcgact tcctgaccgc ctacgccgcg tccaagttcg gggtcgaggg
     2881 gttcatggag gcactggcct cagagatcgc ccccttcggg atccgcacca tgctggtcga
     2941 acccggcttc gtccgcaccg aactcctgac cccgcagtcc acccagtacg cgcagccgtc
     3001 cattgcggac tacgccgacc gcaccgcagc aaccatccag gcgtggcagg gcatggacgg
     3061 caagcagggc ggtgacccgg ccaagctcgc cgatgctctc gtccagctcg ccacactcga
     3121 ccagccgccg gcacggttcg ccgccggcgc cgacgccatc gagctcttcg agaccaaggc
     3181 gcgaaccctg ctgacccagg ccgacgctta ccgagaactg tcttccagcc tcgcccacga
     3241 cgacgcctaa ccaagacacc gcgcgcataa cttgccgcga ttccgctcga tcaaaacagt
     3301 tccagctgcc gggtcgtttc gccgcgaacg ggtcgcggag ctcccgtcct ggtttaccgg
     3361 acatgccgga ttgaggactg agcgagtgtc gcgcgccgtt gcgctcccgg gaatcctgcg
     3421 cgggtcatga gggtcggcgc gggtggcata ttgcgtgcgg gcatttgtga tcggcgtttg
     3481 cctgtgcggc caacccacac ggtgggccgc gtccgccgct gcccggacgg gccagagtct
     3541 caggcgattc gatcttccgt ggccgcggcg gtgatgggtg agggcttaaa gcccttgacg
     3601 gtcatgtaga tgccaacgga tagctcccag acgaagatga gtgcgccacc gggggcgaac
     3661 caggcggagc cctgttcggt gagtccggac accgtggcga cggtagcgac aagcagcagg
     3721 ggcgcggcaa tcaggcccat gatgggtatg acgcggggca ccaggcggga cttgtagagc
     3781 agggtgccga acagcagtcc gttgatggtc gcgctcaggt tggggccgaa ctggaaggtg
     3841 tagttccgca ccgcgaccag ggcgtggcct gtgttcacga gggagccgtg gtcggcaggg
     3901 gtggccccgc cctgacgcag ggtcacgacg gcgagcaggc tgacgacgcc gaccatgatg
     3961 acggccgctt cgaacatgcg ggaggtgacg aacccgagcg ccatcgactc gttctgccgg
     4021 cggacgaccg ggaatacggc gacggcgctg ccgatgccgg ccaaggcggt gaccacgtcg
     4081 agtaggcatc cgatgagcac ccgggtgtcc gctccggagc tcacgatgta gttggggttg
     4141 ttcaggattg gggcgaggaa gtagaacgct gctgggatgg aagcggcgaa cgtgatgagg
     4201 tagaagatgc ctgcggcgcg ggcgttgccg cgtgtccagt ccacgggcgg acggtgagtc
     4261 gtggtcgggg cggtcatggt tgccatgtca gtctccttgg ggtgtggtgt gcggggtgat
     4321 gggtggtgcg aggtctgggt ggacctgggt gatggagacc agtggcaggc cgaggtcgcg
     4381 cagcttgctg agcacgccgt gcaaggcggc ctggtcaacg atgggaccgt gaaggacggt
     4441 ggtgccgtca tccctggggg tgagcgtcag gccgtcgaag ctggcggccc agcgaggggc
     4501 gagatgccct ttgaggcgga tctcgtacca gccgacgtcc cgcgggtggc tggctgagct
     4561 gtccgacatg acgtggcctc tcgagtcgtg tccccgccgg tcgttcggcc aagtggtcgc
     4621 ggttcggggt cgctcgaaac gtaggagccg atgtggtgag ccggcatcac caggcgtggt
     4681 gagggtcgtg gtgatttctc tgcgggcagc gggtatgccg cggccacgtc agcgaggggt
     4741 cagcggtcga ggtggcgttc gaagaggtcg agctcggcgg cccgacgcac tgccgcgcgg
     4801 c
//
LOCUS       DASYFY010000036         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1211349, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000036 DASYFY010000000
VERSION     DASYFY010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1211349"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1777)
                     /locus_tag="VGN19_00725"
     CDS             complement(<1..>1777)
                     /locus_tag="VGN19_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007272139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoketolase family protein"
                     /protein_id="HEV7194437.1"
                     /translation="YWNAANYLTVAQIYLQANPLLREPLAAEHIKPRLLGHWGTSPAL
                     NLIYAQLNRLIRQHDCDVLYVTGPGHGGPAIVANVYLEGTYSEVYPSVSRDETGLLRL
                     VRQFSTPGGIPSHVSVPTPGSIHEGGELGYALVHAFGAAFDNPDLLVACVVGDGEAET
                     GPLEGSWKSISFLNPVRDGAVLPVLQLNGYKISGPTVLGRASDDDVRGLLGAHGYDAR
                     LVSGDDPREVHQQFAATLDDCYSRIREIQEQARGRGLRGRPRWPAIVLRTPKGWTGPK
                     VVDGVPVEGTFRAHQVPLANVRNDRDHLRQLEEWMHSYRPDELFDGGGRLIPSLAALP
                     PVGDKRMGSSPHANGGRLVEGLRLREFADYGIEVDPGVTVAESTRRLGEVIRDIYRDN
                     PTSFRLFCPDETNSNRLGAVFEVQDRCLLEPTMPTDDHVSADGRVMEVLSEHLCEGWL
                     EGYLLTGRHGLFATYEAFAMVSASMTIQHTKWLEAARGLDWRAPVASLNILLTSTCWR
                     NDHNGFSHQGPGLIDTLISMSGDVVRVYLPPDANCLLSVADHCLRSRDYVNLIVIDKQ
                     PELQYLSVAAATAHCARGASVWDWAS"
BASE COUNT          285 a          577 c          638 g          277 t
ORIGIN      
        1 cgaggcccaa tcccacaccg aggcgccgcg ggcgcaatgg gcagtcgctg ccgcaactga
       61 caggtactgc agctccggct gcttgtcgat gacgatgaga ttcacgtagt cgcggctgcg
      121 caggcagtgg tcggcgaccg agagcaggca gttggcgtcg gggggcaggt agacccgcac
      181 cacgtcgccg ctcatcgaga tgagggtgtc gatcagcccc gggccctggt ggctgaagcc
      241 gttgtgatca ttgcgccagc aggtcgaggt caacaggatg ttcagcgacg ccaccggggc
      301 acgccagtcc aggccgcgag cagcctcgag ccacttggtg tgctggatgg tcatcgaggc
      361 ggacaccatg gcgaaggcct cgtacgtggc gaagagaccg tggcgaccgg tgagcaggta
      421 tccctcgagc cagccctcgc agaggtgctc ggacagcacc tccatgaccc gcccgtcggc
      481 gctgacgtgg tcgtcggtgg gcatcgtcgg ttcgaggagg caacgatcct gcacctcgaa
      541 cacggcaccc agccggttgc tgtttgtctc gtcgggacag aacagccgga agctcgtcgg
      601 gttgtcgcga tagatgtcgc ggatcacctc cccgaggcgt cgcgtcgatt ccgcgaccgt
      661 cacacccggg tccacctcga tcccgtagtc agcgaattcg cgcagccgca aaccctccac
      721 caaccgaccg ccgttggcgt gcggcgacga gcccatgcgc ttgtcgccga ctggcggcag
      781 ggcggccagg ctcgggatca ggcggccgcc accgtcgaag agctcgtccg gacggtagct
      841 gtgcatccac tcctcgagct ggcggaggtg gtcgcggtcg ttgcggacat tggccagtgg
      901 cacttggtgg gcccggaagg ttccctccac cgggacgccg tcgaccacct tggggccggt
      961 ccagcccttg ggcgtgcgca gcacgatcgc cggccaccgc ggccggccgc gcagaccccg
     1021 gccgcgtgcc tgctcctgga tctcgcggat gcgtgagtaa cagtcgtcga gcgtcgcggc
     1081 gaactgctgg tggacctcgc ggggatcgtc gccgctcacc agccgggcgt cgtagccgtg
     1141 cgccccgagg agcccgcgca cgtcgtcgtc actggcgcgt cccagcacgg tgggcccgct
     1201 gatcttgtag ccgttgagct ggaggacagg gagaacagcg ccgtcgcgca ccgggttgag
     1261 gaagctgatg ctcttccacg acccctccag agggccggtc tcggcctccc cgtcgccgac
     1321 cacacaggcc accagcaggt cggggttgtc gaaggcagcg ccgaaggcat ggacgagcgc
     1381 gtagcccagc tcgcctccct cgtggatgga cccgggggtt ggcacgctca cgtggctcgg
     1441 gatgcccccc ggggtcgaga actggcgcac gaggcggagc agtccggtct cgtcgcggga
     1501 caccgaggga tagacctcag aatacgttcc ctcgaggtag acgttggcca cgatggccgg
     1561 tccgccgtga cccggtccgg tgacgtagag gacgtcgcaa tcgtgctggc gaatcaggcg
     1621 attgagctgg gcatagatga ggttcaacgc cggcgacgtg ccccagtggc cgagcaggcg
     1681 gggcttgatg tgctcggccg ccaagggctc gcggagcagg ggattggcct ggaggtagat
     1741 ctgggcgacg gtcaggtagt tggcggcgtt ccagtag
//
LOCUS       DASYFY010000037         2882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_633075, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000037 DASYFY010000000
VERSION     DASYFY010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2882
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633075"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..749
                     /locus_tag="VGN19_00730"
     CDS             <1..749
                     /locus_tag="VGN19_00730"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEV7194438.1"
                     /translation="PRCRQPVCRGARRAADLAMSRARPAWLERARHAIEGADDGFFEQ
                     FAPPPGGGRDSSVLLLFAPTPGGGEDIVLTERAHTMRAQPGDISFPGGKREPSDASAA
                     AAALRETEEEVGIEPSSIDVVAELPEIYLRPRQFVVTPVLAWWPEPGPVDRIDPAEVH
                     RAVRAPLADLLDPASRFTVTHPSGYRGPGFDFDGLFVWGFTAGLLSAVLDFGGLTVPW
                     DRSVERPLPDRYRPGGPRDALTQTATEGRA"
     gene            749..1960
                     /locus_tag="VGN19_00735"
     CDS             749..1960
                     /locus_tag="VGN19_00735"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarP family serine protease"
                     /protein_id="HEV7194439.1"
                     /translation="MFLGLSVLDYLLIVLFISYAVTGYRQGLVVSVLSLAGFLIGGAL
                     AMWLVPLALEAWSGSATAPMLRSIVLIASVFILASLGQGVAVALGSRLRSQLRIKPAQ
                     AFDAALGAVAVVLSAAVLVWFIAGALRGGAPPPIAKAIGESRVLTAIDRVVPAQTSRL
                     FAGFREVLDREGFPRVFDGLQSERIEPVAPPDPAVAETAGVRRAAASVIKITGVASAC
                     NRGQEGSGWVVSPGRVVTNAHVVAGMPSATLRIHGTGRSYTGRVVIFDPRRDLAVLAV
                     PGLPADPLRQGPDLQRGQSGVVAGFPLDGPYRLDAARVRDVVQARGSDIYGQQSTSRE
                     VYSLYAQVRPGNSGGPLLSTDGRVVGVIFAKSLDDSQTGYALTMDEARPVLDAAPGAS
                     TPVDTGPCVAG"
     gene            complement(1969..>2882)
                     /locus_tag="VGN19_00740"
     CDS             complement(1969..>2882)
                     /locus_tag="VGN19_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7194440.1"
                     /translation="TLDASMALLDGPWEHRFVAANGARFHVAEQGEGPVVLLLHGFPQ
                     FWWAWRHQMDALAQAGYRACAMDLRGYGASDKPPRGYDTLTSATDVASVLRSLGASRA
                     VVVGHGWGGWIAWSMPTLQPTVTRAVASMSMPHPLVFRHASFTSPGQLRANAYLGGLQ
                     RPFVPERQMTVHGGYVQRLLREWASPEGIWPSPEEARTYAEAMALPFVAHSAAEYYRW
                     VVRSQVRPDGWRFAARMRTPIRLPVLELHGAHDRAVLPSSTTGSADYCTGRFERHVIP
                     QAGHFLPEEAPEAVNARLLDWLARLDR"
BASE COUNT          374 a         1035 c         1035 g          438 t
ORIGIN      
        1 gcccccggtg ccgacaaccc gtatgccgcg gagcccgccg tgcggcagac ctcgccatga
       61 gccgggctcg ccccgcgtgg ctggagcgtg cgcgccacgc catcgaaggt gccgacgacg
      121 ggttcttcga gcagttcgcg ccaccacccg gcggcgggcg tgactcgagc gtgctgttgc
      181 tgttcgcccc caccccgggg ggaggcgagg acatcgtcct gaccgagcgc gcccacacga
      241 tgcgggcgca gccgggcgac atctcctttc ccgggggcaa gcgcgaaccc tcggacgcct
      301 cagctgcggc ggccgccctg cgcgagaccg aggaagaggt cggcatcgag ccgtcctcga
      361 tcgacgtcgt ggccgagctg ccggagatct accttcggcc ccggcagttc gtggtgaccc
      421 ccgtgctcgc ctggtggccc gagcccggtc cggtggatcg catcgacccg gccgaggttc
      481 accgcgctgt ccgcgcgccg ctcgccgacc tcctcgaccc ggcgtcgcgg ttcacggtga
      541 cccaccccag cggctatcga ggaccggggt tcgatttcga cgggctcttc gtgtgggggt
      601 tcaccgcggg gctgctgtcg gcagtactcg atttcggcgg attgaccgtt ccgtgggacc
      661 gtagcgtcga gcgcccgctt cccgatcgct atcggccagg tggcccgcgc gacgccctca
      721 cccagaccgc gacagaaggc cgggcctgat gttcctcgga ctctccgtcc tggactacct
      781 gctcatcgtg ctgttcatca gctatgccgt gaccgggtac cgccaggggc tggtcgtgag
      841 cgtgctgtcg ctggccggct tcctcatcgg tggtgcgctc gcgatgtggc tggtgccgct
      901 ggccctggag gcgtggtcgg gcagcgcgac cgcgccgatg ctgcgttcga tcgtgctgat
      961 agcgagcgtc ttcatcctgg cctcgctcgg tcaaggggtg gccgtggcgc tgggcagcag
     1021 gctgcgttcg cagctgcgga tcaagccggc gcaggcgttc gacgctgccc tcggggcggt
     1081 ggcggtcgtc ctgtccgcgg ccgtcctcgt gtggttcatc gccggtgcgc tgcgcggggg
     1141 agccccgccg ccgatcgcca aggccatcgg cgagtcacgc gtgctgacgg ccatcgaccg
     1201 tgtcgtgccc gcgcagacgt ccaggctctt tgccggcttc cgggaggtgc tcgaccgcga
     1261 ggggttcccc cgcgtgttcg acggtctgca gagcgagcgg atcgagccgg tcgcgccacc
     1321 ggacccggct gtggcggaga ctgcgggcgt gcgccgggcg gccgcctcgg tcatcaagat
     1381 caccggcgtg gccagtgcct gcaaccgagg gcaggagggc agcggctggg tcgtctcgcc
     1441 cgggcgcgtg gtgaccaacg cccacgtggt ggctggtatg ccgagcgcga ccctgcggat
     1501 ccatggcacc ggtcggtcct acaccggtcg ggtcgtcatc ttcgacccgc gccgggacct
     1561 cgccgtcctg gcggtgccgg ggctgcccgc cgacccgctg cggcagggcc cggacctgca
     1621 gcgtggccag agcggcgtcg tcgcgggctt cccgctggac ggtccctacc gcctcgacgc
     1681 cgcccgggtc cgcgacgtgg tccaggcgcg gggctcggac atctacggcc agcagagcac
     1741 cagccgcgag gtctactccc tctatgcgca ggtgcggcca ggcaactccg gaggccccct
     1801 gctgtcgacg gacggccggg tcgtcggcgt catcttcgcc aagtcactcg acgacagcca
     1861 gaccggctac gcgctgacca tggacgaggc gcgtccggtc ctggacgcgg cgccgggcgc
     1921 gtcgaccccg gtcgacaccg gtccctgcgt cgccggctga ggctgccttc agcggtcgag
     1981 ccgggccagc cagtcgagca gccgggcgtt gaccgcttcg ggtgcctcct ctggcaggaa
     2041 gtgacccgcc tgtgggatga catgtcgctc gaaccggccg gtgcagtagt ccgccgaccc
     2101 cgtggtgctg ctcggcagta ccgctcggtc atgcgccccg tgcagctcca ggaccggcaa
     2161 cctgatcggg gtccgcatcc gcgccgcgaa ccgccacccg tccggcctga cctggctgcg
     2221 gaccacccac cggtagtact cggccgcgga gtgcgccacg aagggcagcg ccatcgcctc
     2281 ggcatacgtc ctggcttcct cgggcgacgg ccagatcccc tcgggcgagg cccactcgcg
     2341 caacaggcgc tggacgtacc cgccgtgcac cgtcatctgc cgctctggca cgaaaggacg
     2401 ttgaagacca ccgaggtagg cgttggcgcg cagctgtccg ggactcgtga acgaggcgtg
     2461 gcggaagacg agcgggtggg gcatcgacat cgaggcgacg gctcgcgtca cggtgggctg
     2521 gagcgtcggc atgctccagg cgatccaccc gccccagccg tgcccgacca cgacggctct
     2581 cgaggcaccg agtgatcgca gcaccgaggc gacgtcggtg gctgaggtga gcgtgtcgta
     2641 cccacggggc ggtttgtccg aggcgccgta accgcgcagg tccatcgcgc acgcccggta
     2701 gccggcctgc gccagagcgt ccatctggtg gcgccaggcc caccagaact gcgggaatcc
     2761 gtgcagcagc agcacgaccg gtccctcgcc ctgctcagcg acatggaacc gcgcaccgtt
     2821 ggcggccacg aagcggtgtt cccaaggccc gtcgaggagg gccatggagg catcgagggt
     2881 ca
//
LOCUS       DASYFY010000038         2817 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1474064, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000038 DASYFY010000000
VERSION     DASYFY010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1474064"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VGN19_00745"
     CDS             <1..260
                     /locus_tag="VGN19_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194441.1"
                     /translation="ASVVFALITYESLGATDPKVRTVIGVVATTVMLSVILHGLSADP
                     WAVHYGSWARRTPPFVETQHAVEPLAVHRSGGAHGAAPPRR"
     gene            454..954
                     /locus_tag="VGN19_00750"
     CDS             454..954
                     /locus_tag="VGN19_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194442.1"
                     /translation="MAGWQGLFWVDAVIGIICILITARQVSESHDPTRSRSIDYAGSI
                     LIALTLAPLVLALSKGSAWGWVSAATIGCLALGIVSGIGFVMVERRVPVPMLDLALLR
                     NRVLVGSTMAILIGAGTINALMYLLSLYFQSPDTLGFTTLQAGLATLPATVGPVLRPR
                     PGSWPC"
     gene            948..1100
                     /locus_tag="VGN19_00755"
     CDS             948..1100
                     /locus_tag="VGN19_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194443.1"
                     /translation="MLSFAGVVMAVVMGRYQAARGTIHDSAAAAAAATSLTLPTSATG
                     HAAVNS"
     gene            complement(1128..>2817)
                     /locus_tag="VGN19_00760"
     CDS             complement(1128..>2817)
                     /locus_tag="VGN19_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta-hydrolase family protein"
                     /protein_id="HEV7194444.1"
                     /translation="GAADAADAAPMVPASTRPGRFRRLQHLTLPGCWGAVVFAALSLT
                     PSLLPRGGFIQGLVCGITAAIGYGVGVLVAWLWRAYADRDARVPTRSSWHAFLIIAGA
                     VLVAFFALGQYWQHEIRALMGVTEYNVALVVASPFVAVFFFALFLALSRGIRRVYHWV
                     ADLLARHIGRRAAAATGWVLVSVTVGFLVSGVLLDGLVSAMDEAFSVRNGITEEGVTQ
                     PSTGLRSGGPGSLVPWDSLGREGRTFTGSGPTASDIAAIVHHPAEEPIRIYAGLDSAD
                     DAEQRAALAVDDLQRAGGFQRANLLVLTTTGSGWVDPALVAPFEYLGGGDAATVAIQY
                     SYLPSWLSFLVDQTKAREAGRALFDAVYDRWSRLPANQRPKLFVGGESLGTFGGETAF
                     GGEYDLRNRTAGTVFAGPPNFNTLFREFSDHRDPGSPEIQPVFKNGRTVRFATDAGSS
                     VPPVGQPWEGTRVLYLMHPSDPIVWWTPRLLFTEPDWIGDTAGQDVLPQMFWMPVVTF
                     WQVSADLPFSTGVPPGHGHKYTTEYVDGWYAVMRPASFTPADLDALRTAISALE"
BASE COUNT          426 a          975 c          997 g          419 t
ORIGIN      
        1 tggcgtccgt cgtgttcgcg ctcatcacct acgagtccct cggcgcgacg gacccgaagg
       61 tccgaacggt catcggcgtc gtcgccacga ccgtcatgct cagcgtcatc ctgcacggcc
      121 tcagcgccga cccctgggct gtccactacg ggagctgggc tcggcgaacg ccccccttcg
      181 tcgagacgca gcacgccgtc gagccgcttg cggtccatcg ctccggcggg gctcatggtg
      241 ctgcgccacc gcgtcggtga tgccgtcggc gacgggagtg ctttgccggt cgcttcatcc
      301 agggtgcggc gggcgccacg atcccggcct gcgggctcag cctcttgtcc gtggccaaca
      361 gcggggaggc cagctgcgcg ccgtgtcgtt ctggggggcg gcagcagccg tcggcgccgc
      421 ggccggcccc ctgatgggcg gtgccctggt cacgtggcgg gatggcaggg gctcttctgg
      481 gtcgacgcgg tgatcgggat catctgcatc ctcatcacgg cgcgccaggt gtccgagtcc
      541 cacgacccga cccgctcgcg gtccatcgac tatgccggct cgatcctgat cgccctgacc
      601 ttggcgccgc tcgtgctggc cctcagcaag ggcagcgcct ggggctgggt ctcggccgcg
      661 acgatcgggt gcctggcgct tggcatcgtc tccggcatcg gcttcgtcat ggtggagcga
      721 cgagtgcccg tgcccatgct ggacctggcc ctactgcgca accgcgtcct cgtgggctcg
      781 accatggcca tcctcatcgg ggcaggcacc atcaacgcgt tgatgtacct gctcagcctc
      841 tatttccaga gcccggacac gttgggcttc acgaccctgc aagccggtct ggcgacgctg
      901 ccggccaccg tcggtccggt cttgcggccg cgtcctgggt catggccgtg ctgagctttg
      961 ccggagtggt gatggcggtc gtcatgggtc gttaccaagc ggcgcgtggg accattcacg
     1021 actcggccgc ggcagcggct gccgcgacct cgttgaccct gccgaccagc gccaccggcc
     1081 acgctgcggt gaactcgtag ccccgaccag ccctctcccc ccggcgacta ctccaaggcc
     1141 gagatcgccg ttctcaacgc gtcaaggtca gccggcgtga agctggcggg tcgcatcacg
     1201 gcataccacc cgtcgacgta ctccgtcgtg tacttgtggc cgtgacccgg cgggaccccg
     1261 gtggagaagg gcaggtcggc gctgacctgc cagaaggtca ccacaggcat ccagaacatc
     1321 tgcgggagga cgtcctggcc ggcggtgtcg ccgatccagt cgggctcggt gaagagcagg
     1381 cgcggggtcc accagacgat cgggtcggag gggtgcatga ggtagaggac ccgggtcccc
     1441 tcccagggct gtcccaccgg cggcacggag ctcccggcat ccgtggcgaa ccgcacggtg
     1501 cggccgttct tgaagaccgg ctggatctcc gggctacccg gatcgcgatg gtcactgaac
     1561 tcccggaaca gcgtgttgaa gttgggtggt cctgcgaaga cggtcccggc ggtgcggttg
     1621 cgcaggtcgt actccccgcc gaaggcggtc tctcccccga aggtccccag gctctccccg
     1681 cccacgaaga gcttcgggcg ctggttcgcg ggcagcctgg accatcggtc gtagaccgcg
     1741 tcgaagaggg cgcggcccgc ctcccgggcc ttcgtctggt cgaccaggaa cgacagccac
     1801 gacggcaggt aggagtactg gatggcgacg gtcgccgcgt cgccaccacc caggtactcg
     1861 aagggtgcga ccagcgcagg gtcgacccag ccgctacccg tcgtggtcag gacgagcagg
     1921 ttcgcccgct ggaaaccccc tgcccgctgg aggtcgtcga cagccagggc ggcccgctgc
     1981 tcggcgtcgt ccgccgagtc caggccggcg tagatccgga tcggctcctc ggcagggtgg
     2041 tggacgatcg cggcgatgtc gctcgcggtg ggacccgaac cggtgaacgt acgaccttct
     2101 cgtccgaggg agtcccaggg gaccaaggag cccggaccac ccgaccgaag cccagtcgag
     2161 ggctgggtca cgccctcttc ggtgatcccg ttccggacgg agaaggcctc gtccatggcg
     2221 ctcaccaggc cgtcgagcag gacgccgctg acgaggaagc cgacggtgac ggacacgagc
     2281 acccagccgg tcgctgcggc cgcccgccga ccgatgtggc gggcaaggag gtccgcgacc
     2341 cagtggtaga cgcgtcggat gccccggctg agggcgagga acagcgcgaa gaagaacacc
     2401 gcgacgaagg gggatgcaac gaccagggcc acgttgtact ccgtgacccc catcagtgcg
     2461 cggatctcgt gctgccagta ctgcccgagg gcgaagaacg cgaccagaac ggcaccggcg
     2521 atgatcagga aggcgtgcca ggacgaacgt gtggggaccc gggcgtcccg gtccgcgtag
     2581 gcccgccaca gccatgcgac gagcaccccc acgccatagc cgatggctgc cgtgatcccg
     2641 cagaccaggc cctggatgaa gccgccgcgc gggagcagtg atggggtcaa cgacagggcg
     2701 gcaaagacga cggcgcccca gcatcctggc agggtgaggt gctgcagacg tcggaagcgg
     2761 ccaggtcggg tcgaggccgg gaccatcggc gcggcgtcgg ccgcgtcggc agcgccg
//
LOCUS       DASYFY010000039         3738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_528048, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000039 DASYFY010000000
VERSION     DASYFY010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528048"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1030)
                     /locus_tag="VGN19_00765"
     CDS             complement(<1..1030)
                     /locus_tag="VGN19_00765"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7194445.1"
                     /translation="MHIVYSFPHVLGRPGIATTARHQVEGLARQGIEVTLFCAGVQGT
                     LDPRVRVVQTLSSGPVRIPHRAVGVQRAYRWHDRVVAARLGHVPGVDLVHVWPAGCVR
                     TLRAAAELGIPTAREVPNTHTGYAFEAVAREYAALGMRPVAGHSHTASQSALEREELE
                     YRLATVLLVPSDFSRRTFVDRGFGQERLVLHQYGFDPVAFPAPTPLPSSDTRSGSGGL
                     QALFVGRAEPRKGLHYALRAWVDSGASRTGRFVICGSFVEGYAEVLAPWLADPSVEVR
                     GFVPDPAAVMRAHDILVLPSVEEGSALVSYEAQASGCVPVVSDAVGARCTHDVDGLVH
                     AARDVMGLT"
     gene            complement(1125..1775)
                     /locus_tag="VGN19_00770"
     CDS             complement(1125..1775)
                     /locus_tag="VGN19_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194446.1"
                     /translation="MTTLGNGQVLQNANVSDLVVSGNGVTVRNVQVNGSILVTGDGAM
                     IDHVTAKGVSISSATGTTVQYANIGFGQGDGIHVTSDRGRLVRNVTLRYNYVHDPRVS
                     SNAHYDGTQVRGIDGLNLSCSVYDPGPYQSMFNAAVYLEDANGGDNNIMVSHNWLYGF
                     GFSVMMDAANVTLSANRVGGDIHWGLCRLGTRSGDPNLQSAGNVEDANGAAVTLCR"
     gene            complement(2623..>3738)
                     /locus_tag="VGN19_00775"
     CDS             complement(2623..>3738)
                     /locus_tag="VGN19_00775"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEV7194447.1"
                     /translation="HFQLARRYVLLVVPLMFVLTMLSRHRLRARLVRRRARGIDVLRT
                     VVIGDTQSVEMTIREIHRATWHEMHVVAACVSDLKTTDQSRSTVEGVPVFGYPEEALT
                     TVDLLDADVVAVASDRDLSGPSLRRLAWSLEEREVDLVVSPGLLGVAGPRLSIRPAAG
                     MPLLLIERPVRSGARRLVKILVDRCLTAALLVVGVPAMLLIAAAIRLDSTGPVLFRQR
                     RVGARGEEFEMIKFRTMCVDAEAQLDSLERDAGNTVLFKMRSDPRITRVGRVLRRFSL
                     DELPQLFNVLRGEMSLVGPRPPLLREVEDYEPDAARRLRVRPGLTGLWQVSGRSDLTW
                     DESLRLDLWYVDNWCLTLDLQILFRTAKAVVKGCGAY"
BASE COUNT          631 a         1272 c         1291 g          544 t
ORIGIN      
        1 cggtgaggcc catcacgtca cgagccgcgt ggaccaaccc atcgacgtcg tgcgtacagc
       61 gggcgccgac cgcgtccgag accacgggga cgcagcccga cgcctgggcc tcgtagctca
      121 ccaacgcgct cccctcctcg accgatggga ggacgaggat gtcatgggcc cgcatgactg
      181 ctgccggatc cggcacgaac ccacggacct cgacactggg gtccgcgagc cacggagcaa
      241 gcacctcggc atacccctcg acgaagctcc cgcagatgac gaacctgccg gtgcgcgacg
      301 ctccggagtc gacccacgcc cgcagggcgt agtggagccc tttgcggggc tcggcgcggc
      361 cgacgaagag cgcctgcagg ccaccggagc cagacctcgt gtccgagctg ggcaacggcg
      421 tcggggcggg gaatgcgacc gggtcgaagc cgtactggtg caggacgagc cgctcctgtc
      481 cgaacccacg gtcgacgaac gtccgtcgtg agaagtccga cggcaccagg agaacggtcg
      541 cgagccggta ctcgagctcc tcgcgctcga gagcactttg cgaggcggtg tgcgagtgtc
      601 ccgccaccgg ccgcatcccc agcgccgcgt actcgcgcgc taccgcctcg aacgcatacc
      661 cggtgtgggt gttgggcacc tcccgggcgg tcgggatccc gagttcggcg gccgctcgca
      721 gcgtgcgcac acatcccgcc ggccacacgt gcacgaggtc cacaccgggg acatgaccaa
      781 ggcgtgccgc cacaactctg tcgtgccagc ggtacgcccg ctggacgccg accgcgcggt
      841 gcgggatgcg caccggcccg gacgacagcg tctggaccac cctgaccctg gggtccagag
      901 tgccctgcac accggcacag aacagcgtga cctcgattcc ctgacgcgcc aggccctcga
      961 cctggtggcg cgccgtggtc gcgatcccgg gccgtccgag gacatgcggg aagctgtaga
     1021 cgatgtgcac gagccttccc ctctccgact ccattagacc aacgccggct tcccggctca
     1081 tgcggcattt gatggagacg acgcagcggg gaggtggggc cgccctacct gcagagcgtc
     1141 acggcagcgc cgttcgcgtc ctcgacattg cccgcgcttt gcaggttggg gtcaccactg
     1201 cgcgtcccca gccggcacag gccccagtgg atgtcaccgc cgacccggtt ggcactcaag
     1261 gtcacgttgg cggcgtccat catcacgctg aacccgaagc cgtagagcca gttgtggctc
     1321 accatgatgt tgttgtcgcc accgttggcg tcttcgaggt acaccgccgc gttgaacatg
     1381 gactggtagg gacccgggtc gtagaccgaa cagctcaggt tcaggccgtc gatgccgcga
     1441 acctgggtgc cgtcgtagtg cgcgttggac gaaacccgcg ggtcgtgcac gtagttgtag
     1501 cgcagggtca cgttgcgcac caggcgtccg cggtcggacg tgacgtggat gccgtcgcct
     1561 tggccgaagc cgatgttggc gtactgcacc gtcgtgccgg tcgcactcga gatcgagacg
     1621 cccttggccg tcacgtggtc gatcatcgct ccatcaccgg tcaccagaat cgatccgttg
     1681 acctggacgt tgcgcacggt gacgccgttg cctgacacga ccagatcgga gacgttcgcg
     1741 ttctggagca cctgcccgtt gcccagggtg gtcaccgagc tgttcgtccg tccaccgctg
     1801 gcccccgtgg tcgttgcgga aggcttcacg ccacagggac cacttgccgt tgccggcgct
     1861 gccgccggcg acaccgaggg gcccagtggg gcaggagtcg aggtcgcagc ggccctcgtc
     1921 gcggatgacg atgccgggct gctcggctgg gaggggcggg aggcgttccg cgccgctgag
     1981 gtcgtggcgg ctcgcgccaa gggctcggcc gcccgggaag ctgggggccg agtggtcgaa
     2041 ccggtggcgg tgggcgagga cgccgagctc ggcgaagcag actggctggt cgcgggcgca
     2101 ccagcggagg tccgagggtc gggtccggat ggacccaggg caccagaggc gaaggcggcc
     2161 ccgaccgaag tcgtggccag gacgagcagg atcgggacca ccaagcgctt gttcacgccg
     2221 cgctggccac cgccggtgag ggactgtggg aatcgcatga aactccaatt gccgtcacgc
     2281 catcgggacg ccgacgcagg ggtatgccgg tgtgcctggt ggctatggtc gggaaggacc
     2341 tggggacgac ggcgtggtcg gcgcgccacc ggacaaaagg caacgggccc tttcaccgtg
     2401 gtgagggccc gtggttacgt ttcgtgcagc agaaatgccg ccaccgtcgg ccgaagccaa
     2461 cctgtgaacc acacaccctg ctgcgtgcca accggtggtc gcggatcaaa ccgacgcccc
     2521 agtggacggc ccaagactac ggctccgccg cgacaggtca agttggcaga ccccttgccc
     2581 ctccccgacc aggacgggca tcgcgcgacg gatcgggtgc ggctagtagg ccccacaccc
     2641 tttgaccacg gctttcgccg tgcggaagag gatctggagg tccagcgtca ggcaccagtt
     2701 gtcgacgtac cacaggtcga gacgaaggga ctcgtcccag gtcaggtcgc tgcgaccgct
     2761 gacctgccac agaccggtca gacccgggcg aacgcggagt cgccgggctg cgtcgggctc
     2821 gtagtcctcc acctctcgaa gcaacggcgg ccggggtcct acgagggaca tctccccccg
     2881 aaggacgttg aacagctggg gcagctcgtc gagcgagaag cggcgcagca cccggccgac
     2941 gcgggtgatc ctggggtcgg agcgcatctt gaacaagacc gtgttgccgg catcgcgctc
     3001 gaggctgtcg agctgtgctt cggcatccac gcacatggtc cggaacttga tcatctcgaa
     3061 ctcttcgccg cgagccccga cccgccgctg acggaacagg acaggtcctg tcgagtcgag
     3121 tctgatcgcc gccgcgatga ggagcatcgc gggtacgccc acgacgagca gggcggccgt
     3181 caggcagcgg tccacgagaa tcttgaccag gcgccgcgcc cccgaccgga cgggacgttc
     3241 gatcagcagt agcggcatcc cggcggccgg gcggatggac agccgcggac cggccacacc
     3301 aagcagccca ggtgagacga ccaggtccac ttcgcgctcc tccagcgacc aggccagccg
     3361 gcgcagtgat gggcccgaca ggtcccggtc gctggcgacg gcgaccacgt cggcgtccag
     3421 caggtcgacc gtggtcagcg cctcctcggg gtaaccgaac accgggacac cttcgacggt
     3481 ggagcggctt tggtcggtgg tcttcaggtc cgagacacac gccgccacta cgtgcatctc
     3541 gtgccacgtc gcccgatgga tctctctgat cgtcatctcg actgactggg tgtcaccgat
     3601 gacgacggtt cggagtacgt cgatgccccg cgcgcggcga cggacgagcc tggcccgcaa
     3661 cctgtggcgt gacagcatcg tgagcacgaa catgagcggc accacgagca agacgtatcg
     3721 acgggccagc tggaagtg
//
LOCUS       DASYFY010000040         2595 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1106262, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000040 DASYFY010000000
VERSION     DASYFY010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106262"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..605
                     /locus_tag="VGN19_00780"
     CDS             <1..605
                     /locus_tag="VGN19_00780"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7194448.1"
                     /translation="RLAGLLKDVRAAHAVTDVTRRGDGVQIRDVTGQVTPVDRVVIAT
                     HADQALSLLTDPSDEEVTTLKQFGYSSNVTVLHTDRSVLPDAAQARASWNYRMTSCHR
                     PDQPAVVSYWMNRLQGHRSPQDFLVTLNDRERLDPGSVAAVMHYEHPIYTPEAVRAQS
                     QLGGLATNRTVYAGAYHGWGFHEDGCRSGVEAARHFGVAW"
     gene            602..1396
                     /locus_tag="VGN19_00785"
     CDS             602..1396
                     /locus_tag="VGN19_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 domain-containing protein"
                     /protein_id="HEV7194449.1"
                     /translation="MSAAPLPTVPETTGQAPELTQLPALPALVAGQVTHRRPGPVGHA
                     FRHRVYLWLIDLDSVPRQPWHLRAFARFSSADHLGDPGLPIKGNIENYLALNGIQLGD
                     RGRVLMLANARVLGHVFDPLSVFWCYDRDGVLACVVAEVHNTYGGRHAYLLHPDEAGV
                     AVTGKDFHVSPFFDVSGTYELRFTLRPDLVATTVTLRREGAVAFSATFLGRPEPATAP
                     ALARRLIRQPLMTQRVSALIRVHGIWLWLRGLPVRAHPHHIRQEGV"
     gene            1399..>2595
                     /locus_tag="VGN19_00790"
     CDS             1399..>2595
                     /locus_tag="VGN19_00790"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015937306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEV7194450.1"
                     /translation="MTVSTAIRWPTAVTPPRASLRATIARVVFEHALRRVPVRVSYPD
                     GRVLGAGSPASPELKVVRPAAFFTRLGRDAKIGFGEAYMAGDWRAGSGTDLADLLTPF
                     ASRLTTLIPPALQRLRVLVDRRVPHDHENTPDGSRTNIAAHYDLSNDLFAAFLDPTMT
                     YSCAWFGDSEPIAGATRLEEAQLRKIDGILDLAGVQAGTRMLEIGSGWGSLAIRAAQR
                     GARVTTITLSHEQMRLARERVEAAGLSGLAEVRVQDYREVEGQYDAIVSVEMIEAVGE
                     AYWPTYLAALDRLLAPGGRAAIQAITMDHERFLATRRSFSWIQKYIFPGGIIPSLQAV
                     DDALAAHTTLRVTRQRELRPHYARTLRLWRERFLGQWPHLHAQGFDETFRRMWEFYLA
                     YSEAGFR"
BASE COUNT          376 a          995 c          828 g          396 t
ORIGIN      
        1 agcggctcgc tgggctgctc aaggacgtgc gcgcggccca tgccgtcacc gacgtcaccc
       61 ggcgcgggga cggcgtccag atccgggacg tcaccgggca ggtcaccccc gtggaccgcg
      121 tcgtcatcgc gacgcacgcc gaccaggccc tcagcctgct caccgacccc agcgacgagg
      181 aggtcaccac tctcaagcaa ttcggctatt cgagcaacgt caccgtgctg cacaccgacc
      241 gctcggtcct gccggacgcc gcgcaggccc gggccagctg gaactaccgg atgacgtcct
      301 gccaccggcc tgatcagccc gcggtggtga gctactggat gaaccggctc caggggcacc
      361 gatcaccgca ggatttcctc gtcacgctca atgaccgcga gcgtctcgac ccgggctccg
      421 ttgcggcggt catgcactat gagcacccga tctacacgcc cgaggcggtc cgggcgcagt
      481 cgcagctcgg tggcctcgcc accaatcgca cggtgtatgc cggggcctac cacggctggg
      541 gcttccacga ggacggctgc cgctccggtg tcgaggccgc ccggcacttc ggagtggcct
      601 ggtgagcgcc gcccccctgc ccacggtgcc agagacgacc gggcaggcac ccgagctgac
      661 ccagctgccc gcgctgcccg cgctcgtcgc tggccaggtc acgcaccggc gccccgggcc
      721 ggtcggccat gcgttccggc accgggtcta cctgtggctt atcgacctgg actcggtccc
      781 ccggcagccc tggcacctga gggcgttcgc gcgcttcagc agcgctgacc acttgggcga
      841 ccctggtctg ccgatcaagg gcaacatcga gaactacctg gcgctcaacg gcattcagct
      901 cggtgaccgg ggacgagtgc tcatgctggc caacgcccgg gtcctgggcc atgtgttcga
      961 cccactctcg gtcttctggt gctatgaccg cgacggcgtc ctcgcgtgtg tcgtcgcgga
     1021 ggtccacaac acctacggcg ggcggcacgc ctacctcctg catcccgacg aggcgggggt
     1081 cgccgtgacc ggcaaggact tccacgtctc cccgttcttc gacgtcagcg gcacctacga
     1141 actgcggttc accctgaggc cggaccttgt cgccacgacc gtgacgctgc gacgcgaggg
     1201 cgccgtcgcg ttctcagcga ccttcctggg gcgcccggaa cccgcgacgg ccccggctct
     1261 ggcccgtcgg ctcatccgcc agcccctgat gacccagcgg gtctcggctc tgatccgggt
     1321 gcacggcatc tggctgtggc ttcgtggcct gcccgtccgc gctcacccac accacatccg
     1381 gcaggaaggg gtctgaccat gaccgtctcc accgccatca ggtggcccac cgccgtcacc
     1441 ccaccacggg cgtcgctcag agccaccatc gcgcgggtgg tcttcgagca tgccctgcgg
     1501 cgggtccctg tccgtgtgag ctaccccgac ggccgggtgc tcggagcagg gtcgccggca
     1561 tcacccgaat tgaaggttgt tcgccccgcc gcgttcttca cccggctggg ccgcgacgcg
     1621 aagatcgggt tcggtgaggc ctacatggcc ggggactggc gggccgggtc cggcaccgac
     1681 ctggccgacc tgctgacacc cttcgcctcg cggctgacca ccctgattcc cccggccctg
     1741 cagcggctgc gtgtccttgt cgacaggcgc gtccctcacg accacgagaa cactcccgac
     1801 ggctcgcgaa ccaacatcgc cgcccactac gacctcagca acgacctctt cgccgccttc
     1861 ctggacccga cgatgaccta ctcctgcgcc tggttcggcg acagcgaacc gatcgcgggg
     1921 gccacccggc tggaggaggc acagctgcgc aagatcgacg gcatcctcga cctcgcgggc
     1981 gtccaggctg gcacccgcat gctggagatc ggatcggggt gggggtcgct tgccatccgc
     2041 gccgcgcagc gcggtgcccg cgtcaccacg atcaccctgt cccacgagca gatgcggctg
     2101 gcccgtgagc gggtggaagc cgccgggctc tccgggctcg ccgaggtgcg ggtgcaggac
     2161 taccgcgagg tcgaaggcca gtacgacgcc atcgtcagcg tcgagatgat cgaggccgtc
     2221 ggggaggcct actggcccac ctatcttgcg gcccttgacc ggctcctcgc tcccggcggc
     2281 agggccgcca tccaggccat caccatggac cacgagcgtt tcctcgccac ccggcgcagc
     2341 ttcagctgga tccagaagta catcttcccc ggcggcatca tcccgtcctt gcaggcggtc
     2401 gacgacgccc tcgcggccca caccacgctg cgcgtgacgc gacagcgcga gctccggccg
     2461 cactacgccc ggaccctgcg cctatggcgg gaacgcttcc tcggccagtg gccccacctc
     2521 cacgcccagg gcttcgacga gaccttccgc cgcatgtggg agttctacct cgcctacagc
     2581 gaggccggct tccgc
//
LOCUS       DASYFY010000041         2771 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1001350, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000041 DASYFY010000000
VERSION     DASYFY010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001350"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..564)
                     /locus_tag="VGN19_00795"
     CDS             complement(49..564)
                     /locus_tag="VGN19_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194451.1"
                     /translation="MAFSLRRPARLPAPVLHALELGSGERILAWGREQLGATVVATNH
                     RLYAVDAGGQRQLSRPWHEVDAGTWSSELGQLTVTWVDGTRPTQWTLGDATLVPETVR
                     ERVQASVVIGQRVELGPRRNARVAIRQNLATGDLVEQVVLGRGVRPDDDVVAGLTAEA
                     LAELREQVGLD"
     gene            complement(564..2504)
                     /gene="dnaG"
                     /locus_tag="VGN19_00800"
     CDS             complement(564..2504)
                     /gene="dnaG"
                     /locus_tag="VGN19_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEV7194452.1"
                     /translation="MAGRIKADDIALVKERSSIEDVVREHVTLRPAGPGSMKGLCPFH
                     DEKSPSFTVRATVGAYHCFGCGEGGDVISFVQKVEHLSFTEAVERLAQKLAMELHYEE
                     GGAPRSRDGESLGRRSRLLEAHRVAQEFYHHALLNSPEARAGRDFLRERGFDSEAARR
                     FGVGFAPRGGEELSRHLRAKGFTEEELTLGGLSGRGSRGLYDRFRGRLVWPIHDITGD
                     TVGFGARRLFDDDRIAAKYLNTSETPIYKKSSVLYGLDAAKKSIAGERRAVVVEGYTD
                     VMACHLAGIEGAVATCGTAFGIDHIKVLRRIMRDEADLAPARVVFTFDGDAAGQKAAM
                     RAFGEDQRWASQSFVAVAEGGMDPCELRIAKGDDAVRHLVEDAVPLFEFAVRTTLRRF
                     DLATAEGRVQGMRAVAPIVNSIRDSSMRPEYVRTVAGWIGVEVEQVQAEVARASRMAI
                     RDAKAEQGTPARPDADTVPEPSPEEARAALPSPNLRDPVVFAERQLLQTLLQYPDSFS
                     IEDIDTVAPDAFTAPAHRVVFDGVRSVGGPQRGLSTRAWADRVAEAAPLAVRGLVAEL
                     AVADLPTRMDKGTGLPERRYIDSLLARVQEVSLNSRIAEAMSTMRRMATDPHTDPLTA
                     RTLAGELQDLQRQLAQLRDRAS"
     gene            complement(2589..>2771)
                     /locus_tag="VGN19_00805"
     CDS             complement(2589..>2771)
                     /locus_tag="VGN19_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775264.1"
                     /note="dGTPase family type 2 subfamily; presumably
                     hydrolyzes dGTP to deoxyguanosine and triphosphate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEV7194453.1"
                     /translation="RAVVRDLVTAYHEDPIHRLDPDLLGDWKAADSDGAALRVVVDQV
                     ASLTDIRALLLHERWS"
BASE COUNT          430 a         1006 c          940 g          395 t
ORIGIN      
        1 aaaggattgc ggcagttctg aaaacgggaa ggcgggcgcg tcacagcgtc agtcgagacc
       61 cacctgctcg cgcaattccg ccaaagcctc cgccgtcaag ccagccacca catcgtcgtc
      121 cggccgcaca ccacgcccca acaccacctg ctcgaccagg tcgccggtgg ccaggttctg
      181 ccggatcgcc actcgggcgt tgcgtcgggg acccagctcc acgcgctggc cgatcaccac
      241 gctggcctgc actcgctcgc gcaccgtctc cggcaccagc gtcgcgtcgc ccagcgtcca
      301 ctgagtaggc cgggtgccgt ccacccaggt cacggtgagc tggcccagct ccgaggacca
      361 ggttccggcg tccacttcgt gccacggccg ggacagctgt cgctggccac ccgcgtcgac
      421 ggcatacagg cgatggttcg tggccaccac cgtggcaccg agctgctcgc gcccccacgc
      481 gaggatgcgt tcgccggacc ccagctcgag ggcgtgcagc accggcgctg ggagccgagc
      541 cgggcggcgc aacgagaagg ccatcagctc gcccggtcac gcagctgggc cagctgacgc
      601 tggagatcct ggagctctcc ggccagcgtg cgggcagtca aggggtcggt atgcggatcg
      661 gtcgccatcc gacgcatcgt cgacatggcc tcggcaatgc gactgttcag cgacacctct
      721 tgcacccggg cgagcaggct gtcgatgtac cgacgctccg gcaggcccgt tcccttgtcc
      781 atgcgggtgg gcaggtcagc cacggccagc tcggcgacca ggccacggac cgcgagtggc
      841 gcggcctcgg cgaccctgtc cgcccacgcc cgcgtagaga ggcccctctg cgggccgccg
      901 acactgcgca caccgtcgaa cacgacgcga tgggcgggcg ccgtgaaggc atcgggcgcg
      961 accgtgtcga tgtcctcgat ggagaagctg tcggggtact gcagcagggt ctgcaacagc
     1021 tggcgctccg caaacaccac cgggtcgcgc aggttgggcg agggaagggc tgcacgggcc
     1081 tcttcgggtg agggctcggg cacagtgtca gcatcggggc gcgccggagt gccctgctcg
     1141 gccttggcgt cgcggatggc catccgggac gcgcgggcca cctcggcctg gacctgctcg
     1201 acctcgacgc cgatccagcc cgccacggtg cggacgtact ccggtcgcat cgagctgtcc
     1261 cggatcgagt tgacgatggg cgccacggcc cgcatgccct ggacgcggcc ctcggccgtc
     1321 gccaggtcga accgccgcaa cgtcgtgcgg accgcgaact cgaacagcgg caccgcgtcc
     1381 tcgacgaggt gacgcacggc atcgtcaccc ttggcgatcc gcagctcgca cgggtccatg
     1441 ccgccctccg ccacggcgac gaacgactgg gaggcccagc gctggtcctc gccgaacgcg
     1501 cgcatcgccg ccttctgccc ggcggcgtca ccgtcgaagg tgaagaccac cctcgccggc
     1561 gccaggtcag cctcgtcacg catgatccgg cgcagcacct tgatgtggtc gatgccgaaa
     1621 gccgtgccgc aggtggccac cgcaccctcg ataccggcca gatgacaggc catcacatcg
     1681 gtgtagccct cgacgacgac cgcgcgccgt tccccggcga tggacttctt ggcggcgtcc
     1741 aggccgtaga gcacgctgga cttcttgtag atcggggtct cggaggtgtt caggtacttc
     1801 gcggcgatcc ggtcgtcgtc gaacagccgg cgggcgccga atcccacggt gtcaccggtg
     1861 atgtcgtgga tgggccagac cagcctgccc cggaagcggt catacaggcc acggcttccg
     1921 cggccggaca gaccgccgag ggtgagctcc tcctcggtga accctttggc gcgcaggtgc
     1981 cgcgagagct cctcgccgcc gcgcggggcg aacccgacgc caaagcgccg ggcagcctcg
     2041 ctgtcgaagc cacgctcccg caggaagtcc cgacccgccc gcgcctcagg agagttgagc
     2101 agggcgtgat ggtagaactc ctgtgccacc cgatgggcct ccaagagccg cgagcgacgg
     2161 ccgaggctct cgccatcgcg agaccggggg gcgccgccct cctcgtagtg cagttccatg
     2221 gccagcttct gcgcgagccg ttcgacggcc tcggtgaagc tcaggtgctc gaccttctgc
     2281 acgaacgaga tgacatcccc gccctcgccg cacccgaagc agtgataggc accgaccgtg
     2341 gcgcggaccg tgaaggacgg cgacttctcg tcgtggaagg ggcacagtcc cttcatcgag
     2401 ccggggccgg cgggtcgcag ggtgacgtgc tcgcgcacga cgtcctcgat cgacgaccgc
     2461 tctttgacga gcgcgatgtc gtcggccttg atccgacccg ccactggtcc tcctgttcgc
     2521 cgccgagtct aggtgctggc agcggccggg cgcgggcgga gtccccagac cgccgtcgtc
     2581 gacaacgctc agctccagcg ctcgtgaagt agcaaggcac gaatgtccgt gagcgaggcg
     2641 acctggtcga ccacgactcg cagcgccgcg ccgtcggagt cggcggcctt ccagtcgccg
     2701 agcaggtccg ggtccagccg gtgaatcggg tcctcgtgat aggccgtgac caggtcccgg
     2761 accacggccc g
//
LOCUS       DASYFY010000042         1675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1001401, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000042 DASYFY010000000
VERSION     DASYFY010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001401"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VGN19_00810"
     CDS             <1..534
                     /locus_tag="VGN19_00810"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEV7194454.1"
                     /translation="PALVKGLWWAHTGWLFDVEQTPRKKYAPDLIADRDIERVDNAFP
                     WLVATSMLLPPLVGGLWSMSWQGAVTAFFWGSLVRVSLLHHVTWSINSICHTIGERPF
                     KSRDKSGNVWWLAVLSMGESWHNLHHADPTCARHGVEKGQVDSSARIIWLFERLGWAT
                     DVRWPKAKRIDARRVAA"
     gene            628..1227
                     /locus_tag="VGN19_00815"
     CDS             628..1227
                     /locus_tag="VGN19_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7194455.1"
                     /translation="MTGKQRREQLIEVGRKLFADKGFEGTTVEEIAAKASVSKPMVYE
                     HFGGKEGLYAVVVDREIASLLGGITGALSADLGARETLERAAGALLDYIESSTDGFRI
                     LVRDSPPGQSTGSFASLISDVASQVEHILAAEFKRRRLDPKTAPLYAQMLVGMVALTG
                     QWWLDSRKMKKADVAAHLVNLAWNGLAGLEKKPGLISGS"
     gene            complement(1214..>1675)
                     /locus_tag="VGN19_00820"
     CDS             complement(1214..>1675)
                     /locus_tag="VGN19_00820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194456.1"
                     /translation="AMQVPGNLDAPSHVLMRDTAREHRAADHLGPALQRLVVESPSTY
                     VESLGSLGLVVDGWETTYQHILDPLGQQDNPVLEWVRGTGLRPVLDALTDEDQRREFL
                     ADYDARLRAAYPRSSVGVIFPFRRIFCVAHRVDLAVDPAGNGSQLSGPTSR"
BASE COUNT          274 a          562 c          573 g          266 t
ORIGIN      
        1 cccgcactgg tcaagggact ctggtgggcc cacaccggct ggctcttcga cgtcgagcag
       61 acacctcgca agaagtacgc gccggacctg atcgccgacc gtgacatcga gcgggtcgac
      121 aacgccttcc cctggctggt cgccacctcg atgctgctgc cccctctcgt gggcggcctg
      181 tggtcgatga gctggcaggg cgcggtcacc gctttcttct ggggctcgct ggtgcgggtc
      241 tccctgctcc accacgtcac ctggtcgatc aactcgatct gccacacgat cggtgagcgt
      301 ccgttcaagt cccgcgacaa gtctggcaac gtgtggtggc tggcggtcct gtcgatgggt
      361 gagtcctggc acaacctcca ccacgccgac ccgacctgcg cccggcacgg cgtcgaaaag
      421 ggccaggtcg actccagcgc tcgcatcatc tggctgttcg aaaggctcgg ctgggccacg
      481 gacgtgcgct ggcccaaggc caagcggatc gacgccaggc gggtcgcggc ctgaggcgtc
      541 gtcgcaggcc cgcagacccc ctggggcatg atggaccgtg tgaccgatgc ccgcgagaag
      601 gagacagcga ccaccgcccg ttcacggatg accggcaagc aacgccgtga gcagctgatc
      661 gaggtgggcc gcaaactctt tgcggacaag ggttttgagg gcaccacggt cgaggagatc
      721 gccgccaagg cgagcgtctc gaaacccatg gtctacgagc acttcggtgg caaggagggc
      781 ttgtatgccg tcgtggtcga ccgcgagatc gcgtccctgc tcggcggcat caccggtgcg
      841 ttgagcgccg acctgggcgc ccgcgagacc ctggaacggg ccgccggcgc cctgctggac
      901 tacatcgaga gctccaccga cggcttccgg atcctggttc gcgacagccc gcccggccag
      961 tccacgggct cgttcgcgag cctcatctcc gatgtagcca gccaggtcga gcacatcctc
     1021 gccgcggagt tcaagcgccg tcggctcgac cccaagacgg cgccgctcta tgcgcagatg
     1081 ctggtgggca tggtggcgct caccggccag tggtggctgg actcccgcaa gatgaagaag
     1141 gcggacgtcg ccgctcacct cgtcaacctc gcctggaacg gcctggccgg gctggagaag
     1201 aagccgggac tgatcagcgg ctcgtaggac cgctgagctg agacccgttg cctgcagggt
     1261 caaccgcgag gtccacgcgg tgggccacgc agaagatgcg ccggaagggg aagatgacgc
     1321 cgacggagct tcgtgggtat gccgcgcgga gccgcgcgtc gtagtccgcg aggaactcgc
     1381 ggcgctggtc ctcgtcggtg agcgcgtcca ggaccggccg cagtcccgtg ccgcgtaccc
     1441 actcgagcac cggattgtct tgctgcccaa ggggatccag gatgtgttgg taggttgtct
     1501 cccatccgtc gacgacgagg cccagtgagc cgagcgactc gacataggtc gatgggctct
     1561 cgacgaccag acgctgcagc gccggaccca ggtggtcggc cgcccgatgc tctctcgccg
     1621 tatcgcgcat gaggacgtgc gacggagcgt cgaggttgcc cggcacctgc atggc
//
LOCUS       DASYFY010000043         1587 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_265622, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000043 DASYFY010000000
VERSION     DASYFY010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265622"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /locus_tag="VGN19_00825"
     CDS             <1..1275
                     /locus_tag="VGN19_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018762078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEV7194457.1"
                     /translation="RRQFLGAAAVVGGTAALTGDPFSTTPPAAMAATSTALPAPATSG
                     IDHIVVVMMENRSFDHFMGWLPGANGAQAGLSYVDRYGNSHGTHHLTQFASCGHQDPD
                     HSYEGGRVQLNGGKADGWLRAGEDDLLPIGYYTKPDLAFLGQAAPSWTMCDQYFSAVM
                     AETYPNRFYMHAARTDRLHNSTVTSTLPTIWDRLAAANLTGRYYYSDIPFVALWGTKY
                     QSIARPFGTFLSDAAAGTLPQVSFIDPRFEDEASGSSSDDHPHADIRAGEQFLNEVYT
                     AVTKSPNWSRTLLVVNFDEWGGFFDHVVPGTAPDVSPATALRGFRVPALVVSPRARRG
                     FVAHNVYDHTSVLKAIEWRWGLPALTPRDSGARNIAEVLDFSRPANLSAPSFTLPPFV
                     ATTCTPAAVSGPEQAEWSGLRDKATADGWSLP"
     gene            1272..>1587
                     /locus_tag="VGN19_00830"
     CDS             1272..>1587
                     /locus_tag="VGN19_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018762079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194458.1"
                     /translation="MRTLKNPVVRIFGVLVALCLVVLGVTSRVDPSGAATGGLSAYVP
                     PAKHVFVINIENKGYDSTWGPTSAAPYLAQTLRSQGVLLNTYYGTAHNSQPNYVAQIS
                     GQG"
BASE COUNT          258 a          595 c          497 g          237 t
ORIGIN      
        1 cggcgacagt tcctgggcgc tgcggcagtg gtcgggggca cggccgcgct cacgggagac
       61 cccttctcga cgaccccacc ggctgcgatg gcggccacct cgacggccct tccggcgccg
      121 gccacctcgg gcatcgacca catcgtggtg gtcatgatgg agaaccggtc cttcgaccac
      181 ttcatgggct ggctgccggg cgcgaacgga gcccaggccg ggctgagcta cgtcgaccgg
      241 tacggcaact cgcacggcac ccaccacctc acccagttcg ccagctgcgg ccaccaggac
      301 cccgaccact cctacgaggg cggccgggtc cagctcaacg gcgggaaggc cgacggctgg
      361 ctgcgcgccg gcgaggacga cctgctgccg atcgggtact acaccaagcc cgacctggcc
      421 ttcctcggac aggcggcacc gagctggacg atgtgcgacc agtacttctc cgcagtcatg
      481 gcggagacgt accccaaccg cttctacatg cacgcggcgc ggaccgaccg actgcacaac
      541 tccaccgtca cctcgacgct cccgaccatc tgggaccgcc ttgccgccgc gaacctgacc
      601 gggcggtact actactccga catcccgttc gtggcactgt gggggaccaa gtaccagtcc
      661 atcgcccggc ccttcggcac gttcctctcg gacgcagcgg cggggacgct gcctcaggtc
      721 agcttcatcg acccgcgctt cgaagacgag gcgtccgggt cgtcctcgga cgaccacccg
      781 cacgccgaca tcagggcggg ggagcagttc ctcaacgagg tctacaccgc ggtcacgaag
      841 agtccgaact ggtcgcggac gctgctggtc gtgaacttcg acgagtgggg cggcttcttc
      901 gaccatgtgg tcccgggcac cgcgccggac gtcagccctg ccacggcgct gcggggcttc
      961 cgcgttccgg ctctggtcgt ctcgccacgg gcccgccgcg ggttcgtggc gcacaacgtc
     1021 tacgaccaca cctcggtgct caaggccatc gagtggcgct ggggactgcc cgccctcacc
     1081 ccgcgtgact cgggagcccg caacatcgcc gaggttctcg acttctccag acccgccaac
     1141 ctcagcgcgc catccttcac cctgccgccc ttcgtggcga ccacctgcac ccccgccgcc
     1201 gtctcgggcc cagagcaagc agagtggtcc ggcctgagag acaaagcgac cgccgacgga
     1261 tggagcctgc cgtgagaacg ctgaagaacc ccgtggtccg aatcttcggt gtcctggtcg
     1321 ccctgtgcct ggtggtcctg ggcgtgacgt cccgagtcga cccgagcggg gctgcgaccg
     1381 gcgggctgag cgcctatgtt ccgccggcca agcacgtctt cgtgatcaac atcgagaaca
     1441 agggctacga cagcacgtgg gggccgactt cggccgcgcc ctacctggcc cagaccctgc
     1501 gatcgcaggg cgtactcctc aacacgtact acggcaccgc gcacaactcg cagcccaact
     1561 acgtggccca gatttccggt caaggtc
//
LOCUS       DASYFY010000044         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1684432, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000044 DASYFY010000000
VERSION     DASYFY010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1684432"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..700
                     /locus_tag="VGN19_00835"
     CDS             <1..700
                     /locus_tag="VGN19_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HEV7194459.1"
                     /translation="ISLLTGMAAAQLMITARVGILRTMPEPDANALGRFRHASRALGV
                     PWSHELPYGEFLRGLDRTNPEHLALIHEATALFRGASYTPINGSVPDHLEHAAVAAPY
                     AHVTAPLRRLVDRFGLVVCESVAAGAEIPAWATAALDTLPGIMAASDRTAGGVERACA
                     DTVEAAALEHRVGDVFDAMVVDKHDESSALIQIPDPAVLARASGHSELGTWVKTRLLE
                     ATVATSTVRFAIVG"
     gene            758..1143
                     /gene="rnpB"
                     /locus_tag="VGN19_00840"
     ncRNA           758..1143
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VGN19_00840"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1147..>1626)
                     /locus_tag="VGN19_00845"
     CDS             complement(1147..>1626)
                     /locus_tag="VGN19_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEV7194460.1"
                     /translation="DRQLINVNGRTPFFAPPKSQASVRIVPLPDSVCDALRTHLGRHP
                     TDALVFRNVRGGPLRRSAFWTEWRRVTTAAGLPAIRFHELRHYYASLLIRHGESVKTV
                     QARLGHASASETLDTYSHLWPDSDERTRDAVDLVLQHAADYLRTSAETETQTRRSEG"
BASE COUNT          264 a          543 c          577 g          242 t
ORIGIN      
        1 gatctccctc ctgacgggga tggcggccgc acagctcatg atcaccgcgc gcgtcggcat
       61 cctgcgcacc atgccggagc ccgacgcgaa cgcgctcggc cgcttccgcc acgccagccg
      121 ggcgctggga gtgccctgga gccacgagct gccctatggc gagttcctgc gcggcctgga
      181 ccgcaccaac cccgaacacc tcgcgctgat ccacgaggcc accgccctgt tccgaggcgc
      241 gtcgtacaca ccgatcaacg gttcggtgcc cgaccacctg gagcatgccg cggtcgccgc
      301 gccgtacgcc cacgtcaccg ctccgctgcg caggctcgtc gaccggttcg gcctcgtcgt
      361 ctgcgagtcg gtcgcggccg gcgccgagat ccccgcctgg gccaccgcgg cgctggacac
      421 cctgccgggg atcatggccg cctccgacag gaccgccggc ggggtggagc gcgcgtgcgc
      481 cgacaccgtt gaggcggcag cgctcgagca tcgggtgggc gacgtgttcg atgccatggt
      541 ggtcgacaag cacgacgaga gcagcgccct catccagatc ccggaccccg ctgtacttgc
      601 gagggcgtcg gggcacagcg agctcgggac gtgggtcaag acccgtctcc tcgaggcgac
      661 cgtcgcgacg agcaccgtgc gcttcgcgat cgtcggctag cccacgtatg ccgcgtggcc
      721 ggcggcgcgg catacctgcc ctatccttgg tcacggatga gtcggccagg cggtcgcgtc
      781 ggtgagcaat caccgccgag gaacgtccgg gctccacagg gcaaggtggt ggctaacggc
      841 cacccggggt gacccgcggg acagtgccac agagaacaga ccgcctcgtc gccgggtaaa
      901 ccggagacga gggaagggtg aaacggtggt gtaagagacc accagcggtc tgggtgacca
      961 ggccggctcg gtaaacccca cctggagcaa gctcagacag tgtgcgttcg agggcggccc
     1021 gcccgagtac acgggtagag cgctggaggc agtcggcaac ggctgtcgta gatggatgac
     1081 cgtcacctgg cggctggcaa cggccgacag ggacagaacc cggcgtatcg gccgactcat
     1141 ccacttttag ccttctgacc tgcgggtttg cgtctctgtc tcggcggaag tccgcaaata
     1201 gtccgcagca tgctggagta cgaggtccac agcgtccctc gtacgctcgt cggagtcggg
     1261 ccagaggtgg ctgtaggtgt cgagcgtctc gctggcgctg gcgtggccaa gtcgcgcctg
     1321 caccgtcttc acagactccc cgtggcggat gagcagggag gcgtagtagt ggcgcagctc
     1381 atggaagcgg atggccggga gtccagccgc tgtggttacc cgccgccatt ccgtccagaa
     1441 ggccgagcgg cggaggggac ctccgcgcac gttccggaac acgagcgcgt cggtggggtg
     1501 gcgcccaaga tgtgtgcgga gggcgtcgca aaccgagtcg gggagcggaa cgatcctgac
     1561 gctcgcctga gacttgggtg gtgcgaagaa cggcgtcctc ccgttgacgt tgatgagctg
     1621 ccgatc
//
LOCUS       DASYFY010000045         2733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1264252, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000045 DASYFY010000000
VERSION     DASYFY010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1264252"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..1218
                     /gene="dapC"
                     /locus_tag="VGN19_00850"
     CDS             58..1218
                     /gene="dapC"
                     /locus_tag="VGN19_00850"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HEV7194461.1"
                     /translation="MSARALPDFPWDSLAPFKERASAVSGGLVDLSVGTPVDPTPLVV
                     QEALRAAADAPGYPQTYGTPALREAVAAWFARRRGVPDLDPDGVLPTIGSKELVAWLP
                     SLLGLGSGDIVGFPGIAYPTYDVGARLAGAIPLAVDGLAALGPLTSATTPKLLWLNSP
                     GNPTGRVLGVEHLAKVVAWARAHDVVVASDECYAELDWRPSATEPATSAPTTPTTPTT
                     PTTPSILDPRVCGGRHEGLLAVYSLSKQSNLAGYRAAFVAGDVALVRRLLEVRKHAGM
                     IMPWPVQRALTVALGDDTHVAEQKARYAARRAVLRPAVESFGLRVDHSEAGLYLWATR
                     GEDAWTTIDALAARGILAAPGTFYGHAGREHVRIALTATDERIALAAARLGR"
     gene            1334..2629
                     /locus_tag="VGN19_00855"
     CDS             1334..2629
                     /locus_tag="VGN19_00855"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEV7194462.1"
                     /translation="MTDATAGATLKVGDKTLELPLVKATEGNNGYDVSKLMKATGNVT
                     LDTGFVNTASCSSAITYIDGDAGILRYRGYPIEQLAEKSSYLEVSYLLIYGELPTQSQ
                     LDDFDQKVRRHTLLHEDLRAFFNGFPRDAHPMPVLSSAVSALSTFYQDSLDPFDKEQV
                     EISTVRLLAKLPTIAAYAYKKSVGQPFLYPDNSLSLPENFLRMTFGFPAEPYDLDEDM
                     VKALDLLLILHADHEQNCSTSTVRLVGSSNANLFASVSAGINALFGPLHGGANQAVLE
                     MLQKIHDGGDSVDTFVKKVKDKEKGAKLMGFGHRVYKNYDPRAAIIKKTADKILTKGG
                     VQDPLLDIALQLEQRALEDDYFIERKLYPNVDFYTGLIYKSMGFPTRMFTVLFALGRL
                     PGWIAQWREMIEDPQTKIGRPRQIYTGATERDYVAMTGR"
BASE COUNT          442 a          981 c          885 g          425 t
ORIGIN      
        1 gaccacccga tcatcgccga cctcccaccc cagccccacg acgactgagt ggcgggcgtg
       61 agcgctcgcg ctcttcctga ctttccctgg gactcgctcg ctccgttcaa ggagcgagcg
      121 agtgctgtgt ccggagggct ggtcgacctg tccgtgggta ccccggtcga ccccaccccg
      181 ctggtggtcc aggaggccct gagggccgcg gccgacgccc cgggctaccc gcagacctac
      241 ggaacgccag ccctgcgcga agcagtggcc gcctggttcg cccggcgccg cggcgtaccc
      301 gacctcgacc ccgacggcgt actgcccacg atcggcagca aggagctggt cgcctggctg
      361 cccagcctgt tgggtctggg cagcggtgac atcgtgggtt tccccggcat tgcctacccc
      421 acctacgacg tgggtgcgcg gctggccggg gccatcccgc tggctgtcga cgggcttgcc
      481 gccctcggcc ccctcacttc ggccacgacg ccgaagctgt tgtggctcaa cagccccggg
      541 aaccccacgg gtcgcgtcct cggggtcgag cacctcgcca aggtggtggc ttgggcccgt
      601 gcacacgacg tcgtcgtggc cagcgacgag tgttatgccg agctggactg gcgcccctcg
      661 gcgacggagc cggccacctc agcgcccacc acgcccacga cgcccacgac gcccacgacg
      721 ccgagcatcc tcgatccccg cgtctgcggt gggaggcacg aggggctgtt ggccgtgtac
      781 tcgctgagca agcagtccaa cctggccggc taccgtgccg ccttcgtcgc aggcgatgtg
      841 gccctcgtgc gacgcctgct cgaggtgcgc aagcacgccg gcatgatcat gccctggccg
      901 gttcaacggg ccttgaccgt ggcgctgggc gacgacaccc acgtggctga gcagaaggcg
      961 cggtatgccg cgcgtcgggc cgtgctgcgc ccggccgtcg agtcgttcgg tctgcgcgtg
     1021 gaccactcgg aggccggcct gtacctgtgg gcgacccggg gagaggacgc ctggacgacc
     1081 atcgacgcac tggccgcccg cggcatactc gctgctcctg gcaccttcta tgggcatgcg
     1141 ggccgggagc atgtgcggat cgctctcacg gccacggacg agcgcatcgc cctggctgcc
     1201 gcacgtctgg gtcggtagtc gggccgattc cctgcgtcac acatccgtgg ggtagcgtcg
     1261 cagtgcgagt gcgctgggag cgcgcggcgc gagaccaggt gggtgcccgc aagacgtgaa
     1321 ggacggattt cgcatgactg acgcaaccgc tggcgccacc ctgaaggtcg gcgacaagac
     1381 cctcgagcta ccgctggtca aggcgaccga gggcaacaac gggtacgacg tctccaagct
     1441 gatgaaggcg accggcaacg tcaccctcga caccgggttc gtgaacacgg cctcgtgcag
     1501 cagtgccatc acgtacatcg acggggacgc gggcatcctg cgttaccgcg gctaccccat
     1561 cgagcagcta gccgagaagt ccagctacct cgaggtctcc tacctgctga tctacggcga
     1621 gctgcccacc cagtcccagc tcgacgactt cgaccagaag gtacgccgtc acacgctcct
     1681 gcacgaggac ctgcgggcgt tcttcaatgg tttccctcgc gacgcgcacc cgatgccggt
     1741 gctgtcctcg gcggtgtccg cgctctcgac cttctaccag gacagcctcg accccttcga
     1801 caaggagcag gtcgagatct cgaccgtgcg cctgctggcc aagctgccga ccatcgcggc
     1861 ctacgcctac aagaagtccg tgggccagcc gttcctgtac cccgacaact cgctgtccct
     1921 gccggagaac ttcctgcgga tgaccttcgg cttccccgcc gagccctatg acctcgacga
     1981 ggacatggtc aaggcgctcg acctgctgct catcctgcat gccgaccacg agcagaactg
     2041 ctcgacgtcc acggtgcgcc tggtgggttc gtccaacgcc aacctgttcg cctcggtctc
     2101 cgccggcatc aacgcgctgt tcggcccgct ccacggtggc gccaaccagg ccgtcctcga
     2161 gatgctccag aagatccacg acggcggcga cagcgtcgac accttcgtga agaaggtgaa
     2221 ggacaaggag aagggcgcca agctgatggg cttcggccac cgggtctaca agaactacga
     2281 cccgcgggcc gcgatcatca agaagacggc agacaagatc ctgaccaagg gcggcgtcca
     2341 ggacccgttg ctcgacatcg ccctgcagct ggagcagcgc gcgctcgagg acgactattt
     2401 catcgagcgc aagctctacc ccaacgtcga cttctacacg gggctgatct acaagtcgat
     2461 gggcttcccg acgcggatgt tcacggtcct gttcgcgctg ggccggctgc cgggctggat
     2521 cgcccagtgg cgcgagatga tcgaggaccc gcagaccaag atcggacgcc cgcgccagat
     2581 ctacaccggt gccactgagc gcgactacgt cgcgatgacg ggtcgctgag cccggctcct
     2641 gcccgcgtca ccggcgtcag ccggcgtcag ccggccaccg tgagctgtcg cagcgtcagc
     2701 cggcgaaggt cacggtgacc gtcgtggcgg cac
//
LOCUS       DASYFY010000046         5107 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_55393, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000046 DASYFY010000000
VERSION     DASYFY010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5107
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55393"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /locus_tag="VGN19_00860"
     CDS             complement(<1..304)
                     /locus_tag="VGN19_00860"
                     /inference="COORDINATES: protein motif:HMM:NF014870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEV7194463.1"
                     /translation="MRTHWVVDSPVGHLTLVAEDGALSRLTMDSQKYVSDAADLGDRD
                     DAAFRVVVGQLEEYFAGERTTFEFPLAPAGDAFKQRVWALLCQIPYGQTRSYRDLAV"
     gene            complement(334..756)
                     /locus_tag="VGN19_00865"
     CDS             complement(334..756)
                     /locus_tag="VGN19_00865"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEV7194464.1"
                     /translation="MDCLFCRIVDGQVAAQVVLDEPLTLGFLDTRPVFKGHVLLVPKL
                     HVDTLPDLPGELLPVLMGAAQRMAQAVVAGLGAQGSFVAVNNVVSQSVPHLHVHVVPR
                     TKGDGLRGFFWPRTKYASEDEAQEYAAKLAAALAAPPS"
     gene            complement(777..1568)
                     /locus_tag="VGN19_00870"
     CDS             complement(777..1568)
                     /locus_tag="VGN19_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003802098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HEV7194465.1"
                     /translation="MFPVSNFLAVSGVSFLVVVGLMIVTAIEGNRQGRVSVVDTTWGL
                     GFVAVAVVAAIVGEGPLWRRLLLLVLVAIWGLRLAWHMHRRNSGKGEDPRYAEMLSGH
                     PGHPLLVAIRKVYAVQGLAVWFVSLPIQASASAGDGLTAVAAVGTGLWALGVVFEAVG
                     DRQLAAFKADPNTRGTVMDRGLWAWTRHPNYFGDSCVWWGIYLVSASAWPGALTVLSP
                     IAMTYFLVFATGARLLERHMAERPGYAEYQQRTSYFLPRRPRSLR"
     gene            complement(1571..2884)
                     /locus_tag="VGN19_00875"
     CDS             complement(1571..2884)
                     /locus_tag="VGN19_00875"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEV7194466.1"
                     /translation="MSTLEGVRRSRVESSTGVAGQLAEALAPFLDGDLPVRLTAWDGS
                     TAGPQAAPTVVLRSPRALRRLLRHPGELGVAQAYVTGELDVEGPLEGALRHVWTVARQ
                     RQLGGIRPTPRAIARVLRIAAGKGALRLPLAPPASQAVVKGRLHSLTRDRQAIHHHYD
                     LSNEFYQLILDPAMAYSCAYWRSNDPGYTVEDAQRDKFELVGRKLGLQPGSRLLDVGC
                     GWGSMSLYAAEHFGAQVTGITIAAEQKRFIDARIRERGLQDRVEIRLQDYRAVPDDRF
                     DAVVSLEMGEHVGQHNYPTYAQVLHDKVRPGGRVLVQQMSRRGRYPGGGPFIEAFIAP
                     DMHMRPVGETVSFLEDSGLEVRDVHALREHYVRTVEAWHDTFEAHWDEAVTLVGEEVA
                     RVWRLYLVGAAMAFRDGRMGVDQILAVRPDQGVAPLEPVRPAVWS"
     gene            complement(2881..4215)
                     /locus_tag="VGN19_00880"
     CDS             complement(2881..4215)
                     /locus_tag="VGN19_00880"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018761537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEV7194467.1"
                     /translation="MTTATAGLTTHPAIDPIRWPDLTAGRARARRAIEAGVARQIFTS
                     AASRLPVRVELAGRAVIGGGDASSPLMVIHRPHEFFAAVGAKGLIGFGESYMVGDWEA
                     EDLGGLLEVFAAQMASLVPAPLQKLRAFYVARAPRTERNTTSNTRDNIARHYDLSNDL
                     FATFLDETLSYSAALFEGDRETATPVASETVERSTPREGVQWADFATAQTRKIERMLD
                     EAGVRDGSRVLEIGTGWGELAIRAAARGARVVSVTLSSEQQQLARDRIAAAGFSDAVD
                     VELLDYRAVTGQFDAVVSVEMIEAVGHEYWKEYFQTIDRVLAPGGKVAIQAITMPHDR
                     MLATRYTYTWINKYIFPGGFLPSTEAITNVTREHTGLRVVNRLSFGRHYAETLRLWDE
                     RFLSGLQGVRRLGFDDVFARMWHFYLEYSRAGFRSGYLDVQQITLERAAARS"
     gene            complement(4212..4943)
                     /locus_tag="VGN19_00885"
     CDS             complement(4212..4943)
                     /locus_tag="VGN19_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018769434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 domain-containing protein"
                     /protein_id="HEV7194468.1"
                     /translation="MRTSSATRIYATTVRHSRTEPLVHQFRHRSYSWLVDLDQLPRLG
                     VLAPLARFVAADHLGDPSRTLRQNLDTFVATQGVDLQGGQVLMLAMPRVLGTVFNPMS
                     VFWCHDSNGQLVCTVVEVHNTYGDRHAYLVRTDDSAHAQVAKALYVSPFHDVSGTYRL
                     TLPLPGDRLRVQVVLDRPGHDPFVAGLTGRALPARASTVLKLALTQPLEPLAVSLRIR
                     WHGIRLWLRRLPVNQRPAHHQEAVQ"
     gene            complement(4940..>5107)
                     /locus_tag="VGN19_00890"
     CDS             complement(4940..>5107)
                     /locus_tag="VGN19_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011692205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amine oxidase"
                     /protein_id="HEV7194469.1"
                     /translation="RRLPELGTARLAFAGAYHGWGFHEDGAKSGVTAAANLGVIWQVG
                     QPAPVLEVAAS"
BASE COUNT          861 a         1766 c         1759 g          721 t
ORIGIN      
        1 cgacggcaag atcgcgatag ctgcgcgtct ggccataggg gatctggcac agcaacgccc
       61 acacgcgctg tttgaaggcg tcgcccgcgg gcgccagcgg aaactcgaag gtggtgcgct
      121 cccccgcgaa gtactcctcg agctggccga cgaccaccct gaatgcggca tcgtcccgat
      181 caccgagatc ggcagcgtcg ctgacgtact tctggctgtc catggtgagc cggctcaggg
      241 caccgtcttc ggccaccagc gtcagatgac cgaccggtga gtccaccacc cagtgcgtcc
      301 gcatgcagga atcctcccaa ccgccggtga cagtcagctc ggcggtgcgg ccaacgccgc
      361 cgccagcttg gcggcatact cctgcgcttc gtcctcggac gcgtactttg tccgcggcca
      421 gaagaagccg cgcagcccgt cacccttggt ccgtggcacg acatggacat gcaggtgcgg
      481 caccgactgg gacaccacgt tgttgaccgc gacgaacgac ccctgcgcac ccagaccggc
      541 cacgaccgcc tgggccatcc gctgcgcggc ccccatcagc accggcagca gctcccccgg
      601 caggtcggga agggtgtcga cgtggagctt ggggacaagc agcacgtgac ccttgaacac
      661 cgggcgggtg tccaggaagc cgagcgtcaa cggctcgtcc aagaccacct gagccgcgac
      721 ctgcccgtcg acgatgcggc agaagaggca gtccacgcag gcgactctag ccgcggttat
      781 cgaagtgacc tcggtcgtcg cggcaggaag tagctggttc gctgctggta ctcggcgtag
      841 cccggacgct cggccatgtg ccgctccagc agccgggcac cggtggcgaa gacaaggaag
      901 tacgtcatgg cgattggcga cagcacggtc agcgcccccg gccacgcgct cgccgaaacc
      961 aggtagatcc cccaccagac gcacgagtcg ccgaagtagt tcggatggcg ggtccaggcc
     1021 cacaggccgc ggtccatgac ggtcccccgg gtgttcgggt cggccttgaa cgcggcgagc
     1081 tgccggtcgc cgacggcctc gaacaccacc ccgagggccc acagaccggt cccgaccgct
     1141 gccaccgcgg tgagcccgtc gcccgcggac gcgctggcct ggatcggcag cgacacgaac
     1201 cagaccgcca ggccctgtac cgcgtacacc ttgcggatgg ccacgagcag cgggtggccg
     1261 gggtgacccg acagcatctc ggcatatcgc gggtcctcgc ccttgccgga gttgcgccga
     1321 tgcatgtgcc aggccaggcg caggccccag atcgccacga ggacgagcag cagcagccgc
     1381 cgccagagtg gaccctcgcc gacgatcgcc gccaccacgg ccacggccac gaagcccagt
     1441 ccccacgtgg tgtcgacgac gctgacgcgc ccttgacggt ttccctcgat cgcggtgacg
     1501 atcatgagtc ccacgacgac gaggaacgaa acgccactga cagcaaggaa gttcgacacc
     1561 ggaaacatca tcaggaccag accgccggac ggaccggctc gagaggggcc acgccctggt
     1621 cgggacggac cgcgaggatc tggtcgaccc ccatccgacc gtcccgaaag gccatggcag
     1681 cgccgaccag atagagccgc cagacgcggg cgacctcttc accgaccagg gtcaccgcct
     1741 cgtcccagtg cgcctcgaag gtgtcgtgcc aggcctcgac ggtgcggacg tagtgctcgc
     1801 gcaaggcatg cacgtcgcga acctccaacc ccgaatcctc aaggaaggac actgtttccc
     1861 cgaccggacg catgtgcatg tccggcgcga tgaaggcctc gatgaacggg cctcctccgg
     1921 gataccgtcc gcgacgcgac atctgctgga ccaggacccg cccaccggga cggaccttgt
     1981 cgtgcagcac ctgcgcgtag gtggggtagt tgtgctgccc cacgtgctcg cccatctcca
     2041 ggctcaccac agcgtcgaac cggtcatcgg gtacggctcg gtagtcctgc agccggatct
     2101 cgacccgatc ctgcagaccg cgctcacgga tgcgggcgtc gatgaagcgc ttctgctctg
     2161 cggcgatggt gatgccggtg acctgcgcgc cgaagtgctc cgcggcatac aggctcatgg
     2221 aaccccaacc acagccgacg tcgagcaacc gcgaccccgg ctgcagaccg agcttgcgcc
     2281 ccaccagctc gaacttgtcg cgctgggcat cctccaccgt gtagccagga tcgttggacc
     2341 gccagtaggc gcacgagtag gccatcgccg ggtcgaggat gagctggtag aactcgttcg
     2401 acaggtcgta gtgatggtgg atggcctgcc ggtcccgcgt caggctgtgc aggcgcccct
     2461 tgacgaccgc ttggctcgcc gggggcgcga gcggcaacct caacgcgccc ttcccggcgg
     2521 cgatccgcag caccctcgcg atcgcacgcg gagtggggcg tatgccgccc agctggcgtt
     2581 gccgggccac ggtccacacg tgcctgaggg caccctccag cggcccctcc acgtccagct
     2641 cgccggtgac ataggcctgg gccacgccga gctcgccggg gtggcgcagc agccgtcgca
     2701 acgcccgagg cgacctcagg accactgtcg gggcagcttg aggccccgcg gtgctgccgt
     2761 cccacgcggt caggcgcacc ggcaggtcgc cgtcgaggaa cggcgcgagg gcctcggcga
     2821 gctgtccggc aacaccggtc gaggactcga cccgcgagcg ccgaaccccc tcgagagtgc
     2881 tcacgaccgg gccgccgccc gctcaagggt gatctgctgg acgtccaggt agccagagcg
     2941 gaacccggcc cgtgagtact cgaggtagaa gtgccacatc cgcgcaaaca cgtcgtcgaa
     3001 acccagccgt ctcacgccct gcaggccgga caggaagcgc tcgtcccaca gtcgcagggt
     3061 ctcggcgtag tggcggccga acgacagccg gttcaccacg cgcagaccgg tgtgctcccg
     3121 cgtgacgttc gtgatggcct cggtcgacgg caggaacccg cccgggaaga tgtacttgtt
     3181 gatccacgtg taggtgtacc gcgtcgcgag catgcggtcg tgcggcatgg tgatggcctg
     3241 gatggcgacc ttcccgccag gggcgagcac gcggtcgatc gtctggaagt actccttcca
     3301 gtactcgtgg cccacagcct cgatcatctc cacggagacc acggcatcga actggccagt
     3361 caccgcccgg tagtcgagga gctcgacgtc caccgcgtcg gagaagccag cggcggcgat
     3421 ccgatcgcgg gccagctgct gctgctcgct ggacagcgtg acgctgacga cgcgtgctcc
     3481 gcgggccgcg gcgcggatgg ccagctcgcc ccagccagtg ccgatctcga ggacccgaga
     3541 tccatcccgg acgccggcct cgtcgagcat ccgctcgatc ttgcgcgtct gggcggtggc
     3601 gaagtcggcc cactggaccc cttcgcgcgg cgtgctccgc tcgaccgtct ccgaggcgac
     3661 cggggtcgcc gtctctcgat cgccctcgaa cagcgccgcg gagtagctca acgtctcgtc
     3721 gagaaaggtg gcgaacaggt cgttggacag gtcgtagtga cgggcgatgt tgtccctggt
     3781 gttcgaggtg gtgttgcgct cggtccgcgg tgcgcgcgcg acgtagaagg cccggagctt
     3841 ctgcagcggc gcgggcacca gtgaagccat ctgggcggcg aagacctcga gcagaccgcc
     3901 taggtcctcg gcctcccagt cgccgaccat gtaggactcc ccgaacccga tgaggccttt
     3961 ggcccccacc gcggcgaaga actcgtgggg ccggtggatg accatcagcg gcgagctggc
     4021 gtcgccgccg ccgatgacgg cccggccggc gagctccact cgaaccggga gcctcgaggc
     4081 agcggacgtg aagatctgtc gggcaacccc ggcctcgatg gcgcggcggg cgcgggcgcg
     4141 gccggccgtc aggtcgggcc accggatggg gtcgatggcg gggtgggtcg tgagaccagc
     4201 tgtcgcggtg gtcactggac tgcctcctgg tggtgagcgg gtcgctggtt caccggcagg
     4261 cggcgcaacc agagtcggat gccgtgccag cggatccgca gggacacggc aaggggttcg
     4321 aggggttggg tcagggcgag cttgagcacc gtgctcgcac gggccggaag agcacgaccg
     4381 gtcaggcctg cgacgaacgg gtcatggccg ggccgatcga ggacgacctg cacccgcaac
     4441 cggtcaccgg ggagcggcag agtgagccgg taggtgcccg acacatcgtg gaacgggctg
     4501 acgtacaagg ctttggcgac ctgggcgtgg gcactgtcgt cggtccgcac gaggtaggcg
     4561 tgtcggtcgc cgtaggtgtt gtggacctcg acgacggtgc agacaagctg gccgttggag
     4621 tcgtggcacc agaacaccga catggggttg aacaccgtcc ccaacacccg aggcatggcc
     4681 agcatgagga cctgaccgcc ctgaaggtcc actccctggg tggccacgaa ggtgtcgagg
     4741 ttctggcgca gcgtccggga agggtcgccc aggtggtcgg cggccacgaa ccgtgccaac
     4801 ggggccagca cgccgagccg cgggagctgg tcgaggtcga ccagccagct gtagctgcgg
     4861 tgacggaact ggtgaaccag cggctcggtg cgcgagtggc gcacggtcgt cgcgtagatg
     4921 cgggttgcgg atgaggtcct catgaggctg cgacctccag caccggggct ggctggccga
     4981 cctgccaaat cactccgagg ttggctgcgg cggtgacgcc ggacttcgct ccgtcctcgt
     5041 ggaaacccca cccgtggtag gccccggcga acgccagccg cgcagtgccc agctccggca
     5101 gacgtcg
//
LOCUS       DASYFY010000047         1848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1264491, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000047 DASYFY010000000
VERSION     DASYFY010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1264491"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VGN19_00895"
     CDS             <1..307
                     /locus_tag="VGN19_00895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194470.1"
                     /translation="VVDRAQATVEAKTANGDLCLREVTRGEVLAQTALGKVDIGVLDG
                     VTAYLDLDTRFGSVHNELDSVERPEAGGDTVEVRARTAIGDVTVRRSLAHDAGPIAL"
     gene            304..1263
                     /locus_tag="VGN19_00900"
     CDS             304..1263
                     /locus_tag="VGN19_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009073599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194471.1"
                     /translation="MIATTVSSALATRGLRKSFGDKVVLDGIDLDIAEGSTFSLLGPN
                     GAGKTTAVRIFSTLIEADAGAVHVAGFDLTRQPDKVRGAIGVTGQFSAVDKLLTGEEN
                     LVLMADLHHLDRREGRRRARELLERFDLAEAAGQMVATYSGGMQRRLDLAMTLLGDPR
                     LIFLDEPTTGLDPPSRRTMWEIIRQLVDRGVTVFLTTQNLEEADKLADRIALLDHGRL
                     VAEGTPAELKRRIPGGHARLSFSDRSGVDAAVRVLGEASRNSDGLVLQVPNDGTPESL
                     MALLGRLHHRGVCVDQVTVDTPDLDDVFFALTGHAEKGQVDPR"
     gene            1260..>1848
                     /locus_tag="VGN19_00905"
     CDS             1260..>1848
                     /locus_tag="VGN19_00905"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7194472.1"
                     /translation="MSTLSYALRDSAAMLRRDVRHYLRYPIMTISGVLVPVFLLLLFV
                     GVFGNALRAGLGAAAPAGASYIDYLAPGIIVMTASLSAEATAVSICTDMNEGIIARFR
                     TMAIARTSVLTGQVLGTLIQALTSVVLVVAVALELGFRPTASPIEWVAAVGMFAMFAF
                     ALAWLAVAFGLVAKTPEGANSLSLILVVLPFVSSAF"
BASE COUNT          278 a          677 c          594 g          299 t
ORIGIN      
        1 cgtggtcgac cgggcgcagg caacggtcga ggccaaaacg gccaacgggg acctctgtct
       61 ccgggaggtg actcgcggcg aggtgctcgc ccagaccgcc ctgggcaagg tcgacatcgg
      121 agtcctcgac ggggtgaccg cctatttgga cctcgacacc cgcttcggaa gcgtgcacaa
      181 cgagctcgac tcggtcgagc gtcccgaagc gggcggggac acggtggagg tccgagcccg
      241 caccgcaatc ggcgatgtca ccgtccggcg atccctcgct cacgacgccg gaccaatcgc
      301 gctgtgatcg ccacaaccgt ctcatcggcg ctcgcgactc gaggcctgcg aaagtcgttc
      361 ggcgacaagg tcgtactcga cggcatcgat ctcgacatcg ccgagggatc gacattctcg
      421 ctgctcggcc cgaacggggc cggcaagaca accgcggtgc ggatcttctc gacgctcatc
      481 gaagccgacg caggcgccgt ccacgtcgcc ggcttcgatc tgacccgcca gcccgacaag
      541 gtgcggggcg ccatcggagt caccgggcag ttctcggcgg tggacaaact gctcaccggc
      601 gaggagaacc tcgtcctgat ggccgacctc catcacctgg accgacgcga aggtcgccgc
      661 cgcgcccgcg agctgctcga gcggttcgac ctggccgagg cggccggcca gatggtggcg
      721 acctactccg gtggcatgca acggcggctc gacctggcca tgaccctcct cggcgacccc
      781 cggctcatct tcctggacga gccgaccacc ggactggatc cgcccagccg ccgcaccatg
      841 tgggagatca tccgccagct ggtggacaga ggggtcaccg tcttcctcac cacccagaac
      901 ctggaggagg cagacaagct cgccgatcgg attgcgctcc tcgaccacgg tcgcctggtg
      961 gcggagggca cacccgccga gctcaagcgc cggatccccg gtggtcacgc gcggctctcc
     1021 ttcagcgacc gcagcggcgt ggatgccgcc gtccgggtcc tcggcgaggc gtcccgcaac
     1081 agcgatggcc tcgtgctgca ggtgcccaac gacggcaccc ccgagtcgct catggccctg
     1141 ctcggtcggc tccaccaccg cggcgtctgc gtcgaccagg tcacggtgga cacgccggac
     1201 ctcgacgacg tcttcttcgc tctcaccggt catgctgaga aaggccaggt cgacccacga
     1261 tgagcaccct ctcctatgcc ctgcgcgact cggccgccat gctgcgccgc gacgtccggc
     1321 actacctgcg ctacccgatc atgaccatca gtggcgtgct ggtgcccgtc ttcctcctgc
     1381 tcctgttcgt cggcgtgttc ggcaacgccc tgcgcgccgg cctgggtgcg gcggctcctg
     1441 ccggcgcgtc ctatatcgac tacctcgccc ccggcatcat cgtgatgacc gccagcctca
     1501 gcgccgaggc gacggcggtg agcatctgca ccgacatgaa cgaagggatc attgcccgct
     1561 tccgtaccat ggccatcgcc cggacctcgg tcctgaccgg ccaggtcctg ggcacgctga
     1621 tccaagccct gaccagcgtg gtgctggtcg tcgccgtcgc cctggagctc gggttccgcc
     1681 cgacggccag cccgatcgag tgggttgccg ctgtcgggat gtttgccatg ttcgcgttcg
     1741 cgctggcctg gctggccgtg gccttcggcc tggtggccaa gacccccgag ggtgccaaca
     1801 gcctctcgct gatcctggtg gtgctgccct ttgtcagcag tgccttcg
//
LOCUS       DASYFY010000048         5582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1580005, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000048 DASYFY010000000
VERSION     DASYFY010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5582
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580005"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VGN19_00910"
     CDS             complement(<1..351)
                     /locus_tag="VGN19_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194473.1"
                     /translation="MSTAVVLTQLGGCATWSQLRQGVSWSALELAVRRGEVVRLSRGR
                     YALADVPAHRHVAHRHTAVVRVRPQFQVAEPGLFATVDLADPVRKIALEAEGFEFHGT
                     RAGLERDCRRYTELT"
     gene            532..918
                     /locus_tag="VGN19_00915"
     CDS             532..918
                     /locus_tag="VGN19_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012245384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEV7194474.1"
                     /translation="MSLGDIAGLIAALAFAFLVFRLGSVIGKAGKILDETRMSLRSTT
                     ENVQPTLLKLTDTVSLTNEQLARVDGITTNVSAMTTNANALTSLFAATLGSPVVKVAA
                     FTYGVRSAFSASGARGNAGGRRRRRG"
     gene            925..1269
                     /locus_tag="VGN19_00920"
     CDS             925..1269
                     /locus_tag="VGN19_00920"
                     /inference="COORDINATES: protein motif:HMM:NF040339.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6167 family protein"
                     /protein_id="HEV7194475.1"
                     /translation="MSRLFWAALGAAAGVYAVRKVSKAAEAYTPAGVAHGLSDFGEGL
                     RELAAAVREGMDEREGELRLALGIDTETTADSADGRARGQEPAGRLDPAAARALLEDP
                     TGPRSSGSHRAR"
     gene            1381..4083
                     /gene="alaS"
                     /locus_tag="VGN19_00925"
     CDS             1381..4083
                     /gene="alaS"
                     /locus_tag="VGN19_00925"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEV7194476.1"
                     /translation="METAEIRRRFLSFYESKGHTVVPSAPLVYDDPNLLFVNAGMVPF
                     KPYFLGQQAPQWDRATSVQKCVRTGDIEEVGKTSRHGTFFQMNGNFSFGDYFKEGAIT
                     FAWELVTTPQGEGGFGLDADKIWPTVYEDDDEAFDLWKNTIGIPVERIVRRGKLDNYW
                     HMGVPGPGGPCSEIYLDRGPEYGREGGPAVDEDRYLEFWNLVFMQYDLSAVRAKDDFD
                     IAGDLPNKNIDTGMGLERMATLLQGVDNLYEIDEVYPVLERAAELAGKKYGVHSGHAA
                     SESHPDDVHLRVVADHVRSSLMLIGDGVTPGNEGRGYVLRRMLRRAVRSMRLLGYDEP
                     SLPLLLPVSMERMKNSYPELENGFDRISQIAYAEEESFRRTLVAGTTILDTAVARTKD
                     GGGTTLAGDEAFQLHDTYGFPIDLTLEMAAEQGLEVDRDGFTRLMQEQRERAKADAKA
                     KKGGHANTEVWRDLRALGATDWRAYSELSSEATVVGLVVDGERVEELEPGQRGQVVLD
                     RTPFYAESGGQVADAGIITADGSHLRVVDVQRPVKGLVAHTVEVLTGPIRAGQGVSAE
                     VDPDWRISACQAHSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWGQALSAETR
                     SEIEEVANLAVRSDLAVSAQYMTLPQAREFGALALFGETYDEQVRVIEIGGPWSRELC
                     GGTHVGHSSQIGALTLTGESSVGSGVRRVEAFVGMEALRFLAKERALVAELSDIVKVQ
                     PGELRDRVAALVSRVRDAERELERMRREQVQAATGKLVDYARDVGGVRLLTHDAGAGV
                     TADDLRTMALDLRGRLGESAPAVVAVTGVANDRPGVVVATNAGARERGIKAGALVRVA
                     AQALGGGGGGKDDLAQGGGTDATRTGDALGQIDHAVRAATQGVG"
     gene            4122..4622
                     /gene="ruvX"
                     /locus_tag="VGN19_00930"
     CDS             4122..4622
                     /gene="ruvX"
                     /locus_tag="VGN19_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEV7194477.1"
                     /translation="MRPGRRLGVDVGSVRVGVAVSDPSGLLATPVRTVPRVEPPADTD
                     LDELAALVLELEVVEVVVGLPRTLAGAEGPAAAAARTYAGRLAERVAPVPVRLVDERN
                     TTVDAHRSLRESGVEGRRHRAVVDQAAAVLILQAALDAERSTGRPAGERVTTGGRKPR
                     TKDRRR"
     gene            4619..>5582
                     /locus_tag="VGN19_00935"
     CDS             4619..>5582
                     /locus_tag="VGN19_00935"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF014656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEV7194478.1"
                     /translation="MTEPHLEHSIFGGEHEPHDPEGDGHQGRAARRGAPRRRRRGGRR
                     FGCLVVVAALVVAAAFAAFTVLRPVVDGFLASGDYPGPGSGSVQIVINDGDSGHTIGA
                     ALQKAGVIKTANAFLDAAAADPRSASIQPGSYTLKLRMAAKDALTILEDGRNRSVPRV
                     TIREGLWRAEVFAALSKGTGIPVAQYVAAAANPTALGLPPEARGNVEGYLFPSTYDFP
                     KKSTATQQLATMVAKTIAELQSAGVAEASYERILTIASIVEGEAGVADRGKVARVVQN
                     RLEHPTGPTLGMLQMDSTVNYALQRRGILTKAQYDSAKSSPFDTY"
BASE COUNT          853 a         1949 c         1989 g          791 t
ORIGIN      
        1 ggtcagctcg gtgtagcggc gacagtcgcg ctcgagcccc gcgcgggtcc cgtggaactc
       61 gaacccctcg gcctccagtg cgatcttccg caccgggtcc gcgaggtcaa cggtcgcgaa
      121 gagccccggc tcggccacct ggaactgcgg gcgaacccgc accaccgcgg tatgccggtg
      181 ggcgacatgg cgatgggcag gcacgtccgc gagggcatag cggccacggc tgaggcggac
      241 cacctcgccg cgacggaccg ccaactcgag cgcgctccag gacaccccct ggcgcagctg
      301 gctccaggtc gcacacccac cgagctgggt cagcacgacc gcggtagaca tctggccagc
      361 gtgcccaacc tgggggaagg cgccgcgcgg atttccacag gcgttacgac gtgcagtggg
      421 gcggtcgttg caggtcactg ggcgtggcgc caggggaaga tcgcgggtac tgcacgtccg
      481 aacaccgtgg cgtctgctcg tgggcgtcgg ggtagggtga ccgccatgca tgtgagtctc
      541 ggcgacatcg cgggcctgat cgcggctctg gcctttgcct tcctggtctt caggctgggc
      601 agcgtcatcg gcaaagcggg caagattctc gacgagacgc ggatgagcct gcgcagcacc
      661 acggagaacg tccagccgac tctcctgaag ctgaccgaca cggtgagtct gaccaacgag
      721 cagctcgccc gggtcgacgg catcacgacc aacgtgtcgg cgatgacgac caacgcgaac
      781 gcgctcacct cgctcttcgc agccacgctg ggcagcccgg tggtcaaggt cgcggccttc
      841 acttacggcg tccgctcggc gttctcggcc agcggggcgc ggggcaacgc aggcggccgt
      901 cgccgccgca ggggctgatc accgatgtca cgtctgttct gggctgcctt gggcgccgct
      961 gccggggtgt atgccgtccg caaggtcagc aaggccgctg aggcctatac gccggccggg
     1021 gtggctcacg ggctgtccga cttcggcgag gggctgcgtg agctggccgc cgcggtccgc
     1081 gagggcatgg acgagcgcga gggcgagctg cgcctcgcgc tggggatcga caccgaaacg
     1141 accgccgact ccgccgacgg ccgggcacgc ggccaggagc ccgcgggacg tctcgacccg
     1201 gcggcggcgc gcgccctgct cgaggacccg accggacccc gttcgagcgg cagccaccga
     1261 gctcggtagg ggcgaccggc ccgctgtgcc gccgccccgg catgcccctc ctgctttgcc
     1321 cgtacgattc gtcatgcccg ccggtacccc ccacggcatg cctaaggact gagtacatcc
     1381 atggaaaccg ccgagatcag gcgccgcttc ctctcgttct acgagagcaa gggccacacg
     1441 gtcgtcccgt ctgcaccgct ggtctatgac gacccgaacc tgttgttcgt caatgccggc
     1501 atggtgccct tcaagccgta cttcctcggg cagcaggccc cccagtggga ccgcgcgacc
     1561 tcggtgcaga agtgcgtgcg caccggtgac atcgaggagg tcggcaagac ctcccgccac
     1621 ggcacgttct tccagatgaa cggcaacttc tccttcgggg actacttcaa ggaaggtgcc
     1681 atcaccttcg cctgggagct cgtgacgacc ccccagggcg agggcggctt cggtcttgac
     1741 gccgacaaga tctggccgac cgtctacgag gacgacgacg aggccttcga cctgtggaag
     1801 aacaccatcg gcatcccggt cgagcggatc gtccgccgtg gcaagctcga caactactgg
     1861 cacatggggg tgccgggccc cggtggtccg tgcagcgaga tctacctgga ccgcgggccc
     1921 gagtacggcc gcgagggtgg tccggcggtg gacgaggacc gttatctgga gttctggaac
     1981 ctcgtgttca tgcagtacga cctgtctgcg gtccgcgcca aggacgactt cgacatcgcc
     2041 ggcgacctgc ccaacaagaa catcgacacc gggatgggtc tggagcggat ggccaccctg
     2101 ctgcaggggg tcgacaacct gtacgagatc gacgaggtct atccggttct ggagcgcgcc
     2161 gccgagctgg ccggcaagaa gtacggcgtc cattccggcc atgcggcgag cgagtcgcac
     2221 cccgacgatg tgcacctgcg cgtcgtggcc gaccacgtcc gctccagcct gatgctcatc
     2281 ggcgacggcg tcaccccggg caacgagggc cgtggctacg tgctgcgccg gatgctgcgc
     2341 cgcgcggtgc ggtcgatgcg gctgctcggc tacgacgagc cgagcctgcc gctgctgctg
     2401 ccggtgtcga tggagcgcat gaagaactcc taccccgagc tcgagaacgg cttcgaccgg
     2461 atctcccaga tcgcctatgc cgaggaggag tccttccggc gcacgctggt cgccgggacc
     2521 acgatcctgg acactgcggt ggcccgaacc aaggacggtg gcggcaccac cttggccggc
     2581 gacgaggctt tccagctgca tgacacgtat ggcttcccca tcgacctcac cttggagatg
     2641 gctgccgagc aagggctgga ggtggaccgc gatgggttca ccaggctgat gcaggaacag
     2701 cgcgagcggg ccaaggccga cgcgaaggcc aagaagggcg gccacgcgaa caccgaggtg
     2761 tggcgtgacc tgcgagcgct gggggccacc gactggcggg cgtactcgga gctgtccagc
     2821 gaggccacgg tcgtcggact ggtggtcgat ggtgagcggg tcgaggagct cgagccgggt
     2881 cagcgtggcc aggtcgtcct cgaccggacc ccgttctatg ccgagtccgg tggtcaggtc
     2941 gcggacgcgg gcatcatcac cgccgacggt agccacctga gggttgtcga cgtccagcgc
     3001 ccggtcaagg gtctggtcgc ccataccgtc gaggtgctca ccgggccgat ccgcgcaggc
     3061 cagggcgtgt ccgccgaggt cgacccggac tggcgcatct ccgcgtgcca ggcccattcg
     3121 ggcacgcatg tggtccacgc ggcgctgcgc caggtgctcg gcccgtcggc gctgcagtcc
     3181 ggttcgtaca acaaacccgg ctacctgcgg ctggacttcg cctggggcca ggcgctctcg
     3241 gccgagacgc gcagcgagat cgaggaggtc gccaacctcg cggtccgcag cgacctggct
     3301 gtctccgccc agtacatgac cttgccgcag gcccgcgagt tcggggcgct ggcgctgttc
     3361 ggcgagacct atgacgagca ggtccgcgtc atcgagatcg gcggcccctg gtcgcgtgag
     3421 ctctgcggcg gtacgcacgt gggccactcc tcccagatcg gcgccctgac cctcaccggc
     3481 gagtcgtcgg tgggttcggg ggtccgccgc gtcgaggcgt tcgtcggcat ggaggccctg
     3541 cgcttcctcg ccaaggagcg tgccctggtg gccgagctgt ccgacatcgt caaggtgcag
     3601 cccggagagc tccgggaccg cgtcgcggcc ctggtgtccc gggtgcgcga cgccgagcgc
     3661 gagctcgaga ggatgcgtcg cgagcaggtc caggccgcga ccggcaagct ggtcgactac
     3721 gcccgggacg tgggcggggt ccggctgctc acccacgacg ccggcgccgg cgtcactgcg
     3781 gacgacctgc gcacgatggc cctggacctg cgcggccggc tgggcgagtc agcgcctgcc
     3841 gtggtcgcag tgacaggcgt ggccaacgac cgcccgggcg tcgtggtcgc caccaacgcc
     3901 ggagcccgcg agcgcggcat caaggctggc gcgctggtcc gggtggccgc ccaggcgctc
     3961 ggtggtggcg gcggaggcaa ggacgacctg gcacagggtg gcggcacgga cgccacgcgg
     4021 accggcgacg ccctcggcca gatcgaccac gcggtccggg cggcgaccca gggcgttggg
     4081 tgagccaaag ccccactgac cccacggtgc cgaccccccg gatgcgtccc gggcgccggc
     4141 tgggcgtcga cgtcggcagt gtccgggtgg gggtcgccgt cagcgacccg tccgggctgc
     4201 tcgcgacgcc agtgcgcacg gtgcctcgcg tcgagcctcc tgctgacacc gacctcgacg
     4261 agctggccgc cctcgtgctg gagctcgagg tcgtcgaggt ggtggtcggg ctgccgcgca
     4321 ccctcgccgg tgctgaaggt cccgccgcgg ctgcggcccg cacgtatgct ggtcggctgg
     4381 cggagcgtgt cgccccggtg cccgtgcgtc tggtcgacga gcggaacact acggtcgacg
     4441 cacaccgctc actccgcgag agcggggtag agggccgtcg gcaccgagca gtggtcgacc
     4501 aagccgcggc agtgctcatc ctgcaggccg ccctcgacgc cgaacgaagc actggcagac
     4561 cggccggtga gcgtgtgacg acaggtgggc gaaagccccg gacaaaggac agacgccgat
     4621 gaccgagcct catctcgagc actcgatctt cgggggggag catgagccgc acgacccgga
     4681 gggcgacggg caccagggcc gcgccgcgcg ccgcggcgcc ccgcgtcggc gacgtcgcgg
     4741 aggacgccgg ttcggctgcc tggtcgtcgt ggctgccctg gtcgtcgccg ccgcgttcgc
     4801 cgccttcacg gttctgcgcc cggtcgtcga cgggttcctg gcgagcggcg actacccggg
     4861 cccgggcagc ggctcggtgc agatcgtcat caacgacggc gacagcggcc acaccatcgg
     4921 ggctgcgctg cagaaggccg gggtcatcaa gacggccaac gccttcctcg acgccgccgc
     4981 cgcggacccg cgctcggcct cgatccagcc tgggagctac accctgaagc tgcgcatggc
     5041 cgccaaggac gccctgacca tcttggagga cggccgaaac cggtccgtgc cgcgcgtcac
     5101 catccgcgag gggctctgga gggcagaggt gttcgcggct ctgtccaagg gcaccgggat
     5161 tccggtggcg cagtacgtcg ccgcagccgc gaaccccacc gccctgggcc tgccaccgga
     5221 ggccaggggc aacgtcgagg ggtacctgtt cccgtcgacc tacgacttcc cgaagaagtc
     5281 gaccgccacc cagcagctgg ccaccatggt cgccaagacc atcgccgagc ttcagtcggc
     5341 gggcgtcgcc gaggccagct acgagcgcat cctcaccatt gcctcgatcg tcgagggcga
     5401 ggcaggagtg gccgaccgcg gcaaggtggc ccgcgtggtc cagaaccggc tcgagcaccc
     5461 gaccggcccg accctcggca tgttgcagat ggactcgacg gtcaactacg cgctgcaacg
     5521 gcgcggaatc ctgaccaagg cccagtacga ctcggccaag tcgagcccct tcgacacgta
     5581 ct
//
LOCUS       DASYFY010000049         2044 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_896967, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000049 DASYFY010000000
VERSION     DASYFY010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896967"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VGN19_00940"
     CDS             complement(<1..1185)
                     /locus_tag="VGN19_00940"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEV7194479.1"
                     /translation="MDVSYKVRGQDRLALRDVSFSIGRGESYGLVGESGSGKSTAALA
                     LVRYLPRNGRVSAGTISINGQDPLGMGQGDLRELRARTVSMVYQEPGRALNPSLRVGR
                     QIAEVFEVAGQSSEEATASAQDMLRKVQISDPARVMRRYPHELSGGMAQRVVIAMALA
                     ISPSLLILDEPTTALDATVEAEVLDLVATLRQEFDTSVLFISHNLAVIAKMCDRVGVL
                     YAGELVEEGPARQVFDNPRHPYTVGLLRCIPRRGQRKDRDRLDTIPGFLPTPGHHLTG
                     CIFAPRCALAQDRCRTENPPFFDVSELRTSRCFFHEQAPELPRATPSSLAALATDGIG
                     GPLVTVEKLSKTFAGGVQALAGVDLEVHRGETLGLVGESGSGKTTLARVLLGLTVADQ
                     GSV"
     gene            complement(1383..>2044)
                     /locus_tag="VGN19_00945"
     CDS             complement(1383..>2044)
                     /locus_tag="VGN19_00945"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7194480.1"
                     /translation="HWFGTDNLGRDVLSRVIVGARDILIVTPLATILGTILGTALDLA
                     MGYLGGTFDVITGRIVEAVLALPAVIIAFLFIAALGPSTITLIVVIGLIFTPLIARTV
                     RAAVLTERNLDYLSSARLLGERPLRIMFREILPNIMPAILVEFTVRLGYAVFAVATLS
                     FLGFGVQPPTPDWGADIAADYSGLLAGYWWQVLFPALAIASLVIAVNLITDSIEQVLS
                     S"
BASE COUNT          311 a          743 c          700 g          290 t
ORIGIN      
        1 gaccgagccc tggtcggcca cggtcagccc cagcaggacc cgggccagcg tggtcttgcc
       61 gctgccggac tcgccgacga ggccgagcgt ctcgccgcgg tgcacctcca ggtcgacccc
      121 ggccagtgcc tggacgccgc ccgcgaaggt cttcgacagc ttctcgaccg tcaccagcgg
      181 accgccgatc ccgtcggtgg cgagcgccgc cagcgaggac ggggtggccc ggggcagctc
      241 cggtgcctgc tcgtggaaga agcagcgtga cgtccgcagc tcgctgacgt cgaagaacgg
      301 cggattctcg gtccggcagc ggtcctgggc gagcgcgcac cgcggggcga agatgcaccc
      361 ggtcaggtgg tgtccgggcg tgggcaggaa gccggggatg gtgtccagcc ggtcgcggtc
      421 cttgcgctgg ccgcgccgcg ggatgcagcg cagcagcccc accgtgtacg ggtgccgcgg
      481 gttgtcgaac acctgccggg ccgggccttc ctccaccagc tcgcccgcgt agagcacccc
      541 cacccggtcg cacatcttgg cgatcacggc caggttgtgg ctgatgaaca ggaccgaggt
      601 gtcgaactcc tgacgcagcg tcgcgaccag gtcgagcacc tcggcctcga cggtcgcatc
      661 gagcgccgtg gtcggctcgt ccaggatcag cagcgatggc gagatggcca gcgccatcgc
      721 gatcaccacc cgctgcgcca tcccgccgga cagctcgtgc ggataccgcc gcatgacccg
      781 ggccgggtcc gagatctgca ccttgcgcag catgtcctgg gccgaagcgg tcgcttcctc
      841 cgacgactgg cccgccacct cgaacacctc ggcgatctgc cggcccaccc ggagcgacgg
      901 gttcagcgcc cgcccgggct cctggtagac catggagacg gtcctggccc gcagctcgcg
      961 caggtccccc tggcccatgc ccagcgggtc ctgcccgttg atgctgatcg tcccggcgct
     1021 cacccggccg tttctcggca ggtaacgcac cagcgcgagc gccgccgtgg acttgcccga
     1081 cccggactcg ccgaccagcc cgtaggactc gccccggccg atggagaacg acacgtcgcg
     1141 cagcgcgagg cggtcctgcc cccgcacctt gtacgacacg tccatgtgcg agacgacgag
     1201 tgctctattt tccccgctcg cctccgggcg cccggagtca gtgttttccc cgctcgcctc
     1261 cgggcgcccg gagtcagcgt cttccctcgt cgctcctccg tcgctcctca gtccagacgc
     1321 cgacgcgccc ttcggctcgc gggggggctc gacctggtcg gctccacgcc cttctgtctc
     1381 gctcatgagc tcagcacctg ctcgatcgag tcggtgatca ggttgaccgc gatcaccagg
     1441 gaggcgatgg cgagcgccgg gaacagcacc tgccaccagt agcccgccag caggccgctg
     1501 tagtcggccg cgatgtccgc cccccagtca ggcgtgggcg gctggacgcc gaagccgagg
     1561 aaggacagcg tggccacggc gaacaccgca tagccgagcc ggacggtgaa ctccaccaag
     1621 atggcgggca tgatgttggg caggatctcg cggaacatga tccgcaaggg tctctcgccc
     1681 agcagccggg ccgacgacag gtagtccagg ttccgctcgg tcagcaccgc cgcccggacc
     1741 gtccgcgcga tcagcggcgt gaagatcagc ccgatgacga cgatcagggt gatcgtggac
     1801 ggcccgaggg ccgcgatgaa caggaacgcg atgatcaccg cgggcagcgc gagcaccgcc
     1861 tccacgatcc gcccggtgat cacgtcgaag gtgccgccga ggtagcccat ggccaggtcc
     1921 agggcggtgc ccaggatggt gccgaggatg gtcgcgagcg gggtgacgat caggatgtcc
     1981 ctggctccga ctatgacccg ggacagcaca tcccggccga ggttgtcggt gccgaaccag
     2041 tgcg
//
LOCUS       DASYFY010000050         1683 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1842748, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000050 DASYFY010000000
VERSION     DASYFY010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1842748"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..655)
                     /locus_tag="VGN19_00950"
     CDS             complement(<1..655)
                     /locus_tag="VGN19_00950"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142845.1"
                     /note="catalyzes the transamination of the branched-chain
                     amino acids to their respective alpha-keto acids; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid aminotransferase"
                     /protein_id="HEV7194481.1"
                     /translation="MSQTAAPLTFEVTRRTDPRPDAEREAVLVNPGFGTTFTDHMLSA
                     TWTKGQGWHSGRVAAYGPISLMPSAAVLHYAQEIFEGMKAYRHEDGSIWTFRPEANAQ
                     RMIRSARRMALPELPVEDFVGSLRAFVEVDQAWVPAYGTGETSLYLRPFMFASEAFLG
                     VRPAAEVTYSVIASPAGAYFSGGIRPVTIWLSQHYARAGEGGTGAAKTGGNYASSLAG
                     "
     gene            complement(760..>1683)
                     /locus_tag="VGN19_00955"
     CDS             complement(760..>1683)
                     /locus_tag="VGN19_00955"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEV7194482.1"
                     /translation="YDLGARRWHATGETLPDSVLDELRGHDAILLGAIGDPSVPSGVL
                     ERGVLLPLRFALEQYVNLRPAKLFPGVQSPLDVDRVAPGGIDFVVVREGTEGPYVGNG
                     GALRAGTPHEVATEVSLNTRFGVERVVRDAFARAQARPRKHLTLVHKHNVLTHAGHLW
                     RRTVDEVGQEFPEVETAYQHVDAATIFLVTDPGRFDVIVTDNLFGDIITDIAAAIAGG
                     IGLAASANINPERTYPSMFEPVHGSAPDIAGQALADPTAAILSVALLLEHLGLGAEAC
                     RVEAATAADLAERGTVARSTMAVGDAIAARL"
BASE COUNT          246 a          569 c          621 g          247 t
ORIGIN      
        1 ggccagccag gctcgaggcg tagttccccc cggtcttggc ggcgccggtg ccgccctccc
       61 ccgcccgggc atagtgctgg gacaaccaga tcgtcaccgg cctgattccc ccgctgaagt
      121 acgcacccgc cggggaggcg atgacggagt aggtcacctc ggcggccggt cggacgccca
      181 ggaaggcttc cgaggcgaac atgaaaggcc gcaggtagag gctggtctcg ccggtgccgt
      241 aggccggaac ccaggcctgg tcgacctcga cgaaagcccg cagcgatccg acgaagtcct
      301 ccacggggag ttcggggagc gccatccgtc gagcgctgcg gatcatccgc tgggcgttcg
      361 cctcgggacg gaaggtccag atcgacccgt cctcgtggcg ataggccttc atgccctcga
      421 agatctcctg ggcgtagtgg agcaccgccg cggacggcat cagcgagatc ggcccgtagg
      481 ccgcgacgcg gccggagtgc cagccctggc ccttggtcca ggtggcgctg agcatgtggt
      541 cggtgaaggt ggtgccgaag cccgggttga ccagcacggc ctcgcgctcc gcgtccggcc
      601 gagggtcggt acggcgcgtg acctcgaagg tcagcggggc tgcggtctgg ctcatggagt
      661 cctcctggct cgacgtgaat ctcctgccga ggttacctgc ccggcctgcg ccccggggca
      721 ggagagtgcg tgcccggtcg gtggagcagg tgcctgctgt tagagccgag cagcgatcgc
      781 gtcaccgacg gccatggtcg accgtgcgac cgtcccgcgc tcggccaggt ccgctgccgt
      841 ggcggcctcc acccggcacg cctcggcacc cagcccgagg tgttcgagca gcaacgccac
      901 agacaggatg gcggccgtgg ggtctgccaa cgcctgaccg gcgatgtcgg gggcggagcc
      961 gtgcaccggc tcgaacatgc tggggtaggt ccgctcgggg ttgatgttcg cgctggcggc
     1021 gaggccgatg ccgccggcga tcgccgccgc gatgtcggtg atgatgtcgc cgaagaggtt
     1081 gtcggtgacg atcacgtcga agcgccctgg atcggtgacc aggaagatcg tggccgcatc
     1141 gacgtgctgg tacgccgtct cgacctcggg gaactcttgg cccacctcgt cgacggtgcg
     1201 ccgccacagg tgaccggcgt gagtgagcac gttgtgcttg tggaccaggg tcaggtgctt
     1261 gcgcgggcgc gcctgggccc tggcgaacgc atcccgcacg acccgctcga cgccgaaccg
     1321 ggtgttcagg ctgacctcgg tggcgacctc gtggggggtg ccggcccgca gggcgccgcc
     1381 gttgccgaca tacggcccct cggtgccctc tcgcaccacg acgaagtcga tgccaccagg
     1441 ggcgacgcgg tcgacgtcga gcggactctg cacgcccgga aagagcttgg ccggccgcag
     1501 gttgacgtac tgctcgaggg cgaacctcag cggcagcagg acaccgcgct cgagcacccc
     1561 gctggggacc gacgggtcgc cgatagcgcc gagcaggatg gcgtcgtgcc cacgcagctc
     1621 gtccaggacg gagtccggca gcgtctcgcc ggtggcgtgc caccggcgag cgccaaggtc
     1681 gta
//
LOCUS       DASYFY010000051         1858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1422749, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000051 DASYFY010000000
VERSION     DASYFY010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422749"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VGN19_00960"
     CDS             <1..293
                     /locus_tag="VGN19_00960"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7194483.1"
                     /translation="YAGVDLGGEVADVMTVAVAPHAQRHGLGSRLLEELVARAEADHA
                     AYLMLEVRADNEPALRLYSTRGFEVVNVRRRYYQPGGVDALVMRLALGVVTP"
     gene            290..1339
                     /gene="tsaD"
                     /locus_tag="VGN19_00965"
     CDS             290..1339
                     /gene="tsaD"
                     /locus_tag="VGN19_00965"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEV7194484.1"
                     /translation="MTADEPLVLGLETSCDETGVGIVRGETLLVDSIASSVEEHARFG
                     GVVPEVASRAHLEAMVPTIERATRDAGVRLSDLDAIAVTAGPGLAGALMVGVAAAKAL
                     AVALGLPLYGVNHLAAHVAVDIVEHGPLPEPTLAMLVSGGHSSLLLVPDVTHEIISLG
                     STIDDAAGEAFDKVARVLGLPFPGGPHIDRVAREGNRVAIDFPRGLTQGRDLERHRFD
                     FSFSGLKTAVARWVQAREAAGEPVPIADVAASFQEAVTDVLTRKAILACREHGVQNLQ
                     IGGGVAANTRLRAMAQERCDDAGITLRVPRPGLCTDNGAMVASLGAQLMLKGRAPSDL
                     GLPADSSMPVTEVQA"
     gene            1343..>1858
                     /locus_tag="VGN19_00970"
     CDS             1343..>1858
                     /locus_tag="VGN19_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEV7194485.1"
                     /translation="MPVPVVLDVDTGVDDACAILLAALHPALDLRAVTCVGGNAAVDP
                     VVANTLTVLDAAERPDVVVARGAERPLLEEAVDARHVHGQDGMGDLDWPRSRRLPDPR
                     HAVEVLRDVLLAAAQEGDADRLVTLVPLAPLTNIALLLRTYPAAAKGIREIVFMGGAA
                     QAGNATASAEFN"
BASE COUNT          249 a          655 c          675 g          279 t
ORIGIN      
        1 ggtatgccgg tgtcgacctc gggggtgagg tggcagacgt catgaccgtg gccgtggctc
       61 cgcacgccca gcgccacggc ctgggcagcc gccttctcga ggagctggtc gcgcgggccg
      121 aagccgacca cgcggcatac ctgatgctcg aggtgcgcgc cgacaacgaa ccggccctgc
      181 gcctgtactc gacccgtggc ttcgaggtgg tgaacgtgcg tcgcaggtac taccagccgg
      241 gcggtgttga tgccctcgtc atgcggctcg cgctcggcgt ggtgacccca tgaccgccga
      301 cgagccgctc gtcctgggtc tggagacctc gtgcgacgag acgggggtcg gcatcgtccg
      361 tggggagacg ctcctggtcg actcgatcgc gagcagcgtc gaggagcacg ccaggttcgg
      421 gggagtggtc cccgaggtcg ccagccgggc ccacctcgag gctatggtgc ccaccatcga
      481 gcgcgccacc agggacgccg gggtgcggct gtccgacctg gacgcgatcg cggtgaccgc
      541 aggcccggga ctcgcgggcg cactcatggt gggggtcgcg gcggccaagg cgctcgcggt
      601 agcgctcggc ctgccgctgt acggtgtcaa ccatctggct gcgcatgtgg ctgtcgacat
      661 cgtcgagcac gggccgctcc ccgaacccac cctggcgatg ctggtctcgg gcggtcactc
      721 ctcgctgttg ctggtgcccg acgtcaccca cgagatcatc tccttgggat cgaccatcga
      781 cgatgccgcg ggcgaggcgt tcgacaaggt ggcccgcgtg ctggggctgc ccttccccgg
      841 cggcccgcac atcgaccgcg tcgcccggga gggcaaccgg gtcgccatcg acttcccccg
      901 cggcctgacc caggggcggg acctggagcg gcaccggttc gacttctcgt tctccgggtt
      961 gaagacggcc gtggcgcgct gggtgcaggc gcgtgaggcg gccggcgaac cggtcccgat
     1021 cgcggacgtg gccgcgtcct tccaggaggc cgtcaccgac gtgctgaccc gcaaggcgat
     1081 cctggcctgc cgtgagcacg gcgtgcagaa cctccagatc ggtggtgggg tcgcggccaa
     1141 cacgcgcttg cgcgccatgg ctcaggagcg ctgcgacgac gcgggcatca ccctgcgggt
     1201 gcctcggccc gggctgtgca ccgacaacgg cgcgatggtg gcctccctcg gggcgcagct
     1261 gatgctcaag ggcagggcac catccgacct gggtctgccg gccgactcct ccatgcccgt
     1321 caccgaggtc caggcttagc gcatgcccgt tcccgtggtc ctcgatgtcg acaccggcgt
     1381 cgacgacgcg tgcgccatcc ttctggcggc gctgcacccc gccctggacc tgcgcgccgt
     1441 gacctgcgtc ggcggaaacg cagcggtcga cccggtcgtc gcaaacacgc tgacggtcct
     1501 cgacgccgcc gagcgacccg atgtcgtggt ggccaggggc gcggaacgcc cgctgctcga
     1561 ggaggcggtc gacgcccggc acgtccacgg ccaggacggc atgggcgacc tcgactggcc
     1621 caggtcgagg cgtctgccgg accccaggca tgcggtcgag gtcctgcgtg acgtgctgct
     1681 tgcggcggcg caggagggtg acgcggaccg cttggtcacc ctcgtcccac tggccccgct
     1741 gaccaacatc gcgctgctgt tgcgcacgta tcccgcggcg gccaagggaa ttcgcgagat
     1801 cgtcttcatg ggtggcgcgg cccaagccgg gaacgcgaca gcctcggcgg agttcaac
//
LOCUS       DASYFY010000052         6087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_56155, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000052 DASYFY010000000
VERSION     DASYFY010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6087
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56155"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(291..1541)
                     /locus_tag="VGN19_00975"
     CDS             complement(291..1541)
                     /locus_tag="VGN19_00975"
                     /inference="COORDINATES: protein motif:HMM:NF039823.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5667 domain-containing protein"
                     /protein_id="HEV7194486.1"
                     /translation="MPVLSRKADAFQRALQGAPATDREVDSLLRTAGQVRSLGYAPAP
                     DPAFVEALHDRLMTEARSLPAVTPAAARARAAGRAAARTTPVVVVVGHGLPRALAGAA
                     ASALLVGAIVGVASRQTLPGDSLYPVKTWLDNVAVQLAGNDFDRGQTFLAQGQEHISD
                     ARDLSDAQRSASVGEVNTALRQAIDSVRSGQRTLDRSYASTGNPQALLAMRDFAARAI
                     PQVEVLRSQVSAGSLPLVGELEALLQDSQQATARQLAACGPQCSAAAAAAGGSLSPSA
                     LPTTATGAPSTSSTSAGRGSGPGGIAVPSAPLSNQSTGGIGGVPAPGVSGPGVSVPGV
                     SVPGVSVGTGGLGVGRSATGATLSTGGATINLPPVSVPVPVVTTTVTVPLPSVSLGTT
                     GVHVSLPGTTLGSATIPGATLHLP"
     gene            complement(1653..2447)
                     /locus_tag="VGN19_00980"
     CDS             complement(1653..2447)
                     /locus_tag="VGN19_00980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7194487.1"
                     /translation="MVLSPGPTSIPSLGYAGAGAIAGGSGRSGTSPQHGLAEATEGFL
                     ASLKVLLSLAGEAGTLPGDDRHDAREARAGFGPGAAPQDFERISALVELAQRGDSEAF
                     GMLYERYVDVVYRYVYVRVGAQQLAEDITSETFLRALRRMDSFSWQGRDIAAWFVTIA
                     RNLITDNAKSARFRMEVTTADMLDADQRIDAPDTEVLERLRNQRLLEAVKTLKPEQAE
                     CVVLRFLQGMSLAETAKVLGKSEGAVKQLQLRAVRALHRELGDADL"
     gene            2650..2910
                     /locus_tag="VGN19_00985"
     CDS             2650..2910
                     /locus_tag="VGN19_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEV7194488.1"
                     /translation="MPDPNPSRSPRVTLIGKPGCHLCDEARAVIERVTAELGVGWQEQ
                     SIHDDPALAEQYWEQIPVTLVDGRQHDYWRVDEARLRAALQG"
     gene            3060..3749
                     /locus_tag="VGN19_00990"
     CDS             3060..3749
                     /locus_tag="VGN19_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA];
                     GO_process: GO:0051775 - response to redox state [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEV7194489.1"
                     /translation="MSADPSTRRGIPDATVARLPEYLRALTGFAERGIASVSSEELAT
                     AAGVRSAKLRKDLSHLGSYGVRGVGYEVDHLAYQISRELGLTQDWPVAIVGMGNLGHA
                     LAAYSGFATRGFRVVALLDQDPKLHDQHIAGLPVRPMEALAELVTEQGLAIGVIATPA
                     ASAQAVCDQLVSSGVRSILNFAPCVLVVPADVDVRKVDLSTELQILAFHEQRKALAEG
                     ALASVAQAVAR"
     gene            3746..5056
                     /locus_tag="VGN19_00995"
     CDS             3746..5056
                     /locus_tag="VGN19_00995"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEV7194490.1"
                     /translation="MSLVILGLSHHTAPLPLLEAMSLDAAARSTLGASLTRRDNLSEA
                     IVVSTCNRTEVYAESHTFHGAVTDIAEALTEVTGVPGDELREHLYVHYEDRAIAHAFT
                     VACGLDSMAVGEAQILGQMRTALREGQRSGQVGPALNSLFQQALRVGKRAHTETGIDS
                     VSVSLVEAGLARAQRELGPLQGLDILVVGAGGMSSLAATTVARLGVRSITIINRTLAK
                     AARLAERVGGVARPLTELSAALAAADVVVSCTGSTGVVVDLARAADAQVARAGRPQVY
                     IDLALPHDVAAEVDSLNGVSVAGLGALGDELSGGATPPQVQEVADLVIAEVAAYLTAR
                     AAESVAPTVAALRSHAADVVAGELTRLDQRLPDLDDQARAEVQLAVHRIVEKLLHTPT
                     VRVKELAIGGQGDDYAQALRQLFDLRPGEAVVTSVPPPERGGLP"
     gene            5053..6084
                     /gene="hemC"
                     /locus_tag="VGN19_01000"
     CDS             5053..6084
                     /gene="hemC"
                     /locus_tag="VGN19_01000"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEV7194491.1"
                     /translation="MTATLRLGTRRSALATTQSTWVADQLRTLGHEVELVEIVTEGDT
                     SNAPLSTLGGTGVFAAALRQALLAGDVDLAVHSLKDLPTEPEPGLVIAAIPPREDPRD
                     VLVSTSGAGLGELPAGAIVGTGSPRRVAQLAALGLGLEFKDIRGNVDTRIALARDGAV
                     DAVVLARAGLARLGRLAEVAEVIDPLQMLPAPGQGALAVECRMDDPATITLLSVLDDP
                     DTRAAVTAERALLAALEAGCSAPVGALAEIVEGQDGVELSLRGFVGAVDGSFDLRRSV
                     VGPVGEAESIGRRLASILLEDGADRLVSLDHALDHGHWPPDPPQATGDHPIAAPDRSP
                     APNSTERAP"
BASE COUNT          872 a         2199 c         2126 g          890 t
ORIGIN      
        1 acccgatgct ggtcttcgac ctgaccgacc aggtccgcga gaccatccag cagacgttgt
       61 actcactgct gatgcagcgc aggtcggtct tcttctaaag gcccccttca aggcgcgcgc
      121 cgcccaacgc cgcccgcctc acgccgcccg cctaccgccg gacgccgccg cctagcgccg
      181 ccgaattggg gccagctggc cccaattccg gggccagatg gtcgacacgc accgaaatga
      241 ggcaaggtgg ccccattttg agtgtgggtc tggccgggcg ccgcgaggtc tcagggcagg
      301 tgcagggtgg cgcccgggat cgtggccgac cccagcgttg ttccgggcag gctgacgtgg
      361 acgccggtcg tgccgaggct gacgctgggc agcgggacgg tcaccgtggt cgtgacgacg
      421 ggcacgggaa cggacaccgg gggaaggttg atcgtggcgc cgccggtgga cagggtcgcc
      481 ccggtggcgg aacgaccgac gcccagaccg ccggtaccca cgctgacgcc cgggacgctg
      541 acgcccggga cactcacccc agggccgctc acgcccgggg cggggacgcc cccgatgcca
      601 cccgtggact ggttgctcag cggagcgctc ggaacggcga tcccgccagg accgctcccg
      661 cggcccgcgc tggttgacga cgtggacggc gcgccagtcg cggtcgtggg cagggcagac
      721 ggcgagaggg atcctcctgc ggcggcggcg gcggccgagc actgcggacc gcaggccgcc
      781 agctggcgtg cggtggcctg ctggctgtcc tgaagcagtg cttcgagctc acccaccaac
      841 ggcagggatc cggccgaaac ctgggagcgc agcacctcca cctgagggat ggcgcgggcg
      901 gcgaagtccc gcatggcgag caaggcctgg gggttgccgg tgctggcata cgagcggtcg
      961 agcgtccgct gcccgctgcg cacgctgtcg atcgcctggc gcaacgccgt gttgacctcc
     1021 ccgacgctgg cggaacgctg ggcatcggac aggtctcgcg catcggagat gtgctcctgc
     1081 ccctgcgcca ggaaggtctg accgcggtcg aagtcgttgc ctgccagctg aaccgcgacg
     1141 ttgtccagcc aggtcttaac cgggtacagg ctgtcgccgg gcagcgtctg gcgcgatgcg
     1201 actccgacga tcgcgccgac cagcagcgcg gaggcggcgg cgccggccag tgcgcgcggc
     1261 aggccgtgtc cgaccaccac cacgactggg gtcgtgcgcg cagcggcgcg gccggcagcc
     1321 ctggcgcgcg cggctgcggg ggtgaccgca ggcagggacc gggcttcggt catcaaacgg
     1381 tcgtgcaggg cctcgacgaa ggccgggtcc ggcgctggcg cgtagccgag cgaccgcacc
     1441 tgcccggcgg ttcggagcag tgagtcgacc tcgcggtcgg tggctggggc gccctggagg
     1501 gcgcgctgga aggcgtcggc cttgcggctc agtaccggca tgaccgcccc tccctgccca
     1561 gctgtgtcaa cgccgtggtc acggcttgtt gtgctgagaa cgaggcgggc ggacggaagt
     1621 tacgcgccga tgcgtagcga aatgtcccaa gctcacaggt ctgcatcgcc gagctcccga
     1681 tgcagggcgc gcacggcgcg tagctggagc tgtttgacgg cgccctcgga cttgccgaga
     1741 accttggccg tctcggcgag ggacatcccc tgcaggaagc gcaacacgac gcactctgcc
     1801 tgctcgggct tgagagtctt gaccgcctcg agcagccgct ggttgcgcag gcgttccagt
     1861 acctcggtgt ccggcgcgtc gatccgctgg tccgcgtcga gcatgtcggc cgtggtgacc
     1921 tccatgcgga accgtgccga cttggcgttg tcggtgatca ggttgcgcgc gatggtgacg
     1981 aaccaggccg cgatgtcgcg cccctgccag gagaagctgt ccatccgccg cagcgcgcga
     2041 aggaaggtct ccgaggtgat gtcctcggca agctgctggg cacccacccg gacatagacg
     2101 taccggtaga cgacgtccac ataccgttcg tagagcatcc cgaaggcctc cgagtcgccg
     2161 cgctgggcta gctcgaccag cgccgagatc cgctcgaagt cttgcggcgc ggcgcccggg
     2221 ccaaagcccg cccgcgcttc gcgagcgtcg tgacggtcat cgcccgggag ggtcccagcc
     2281 tctccggcaa ggctcagcag aaccttcagc gaggcgagga agccctcggt ggcttcggcc
     2341 aacccgtgct gcggcgacgt cccagacctc ccggacccac ccgctatcgc gccggccccg
     2401 gcgtaaccca ggctcgggat gctcgttgga cctggcgaca gcaccatggc aggacgtcgt
     2461 accgcgagcg ggctcgcggc gttgcgtgat gttcggaacc agatagctag acctcctggc
     2521 cccccagttt ccccgaattc gtccggcttg tcaggagacg tctgacacag gctgtctggc
     2581 gaagtgcgcc cgggcaaccc cgtttgggtg ccgttggtcg tcgggtcgta ggcggcatac
     2641 agtgcaaagg tgccggatcc gaatccctca cgttccccac gcgtcacgtt gatcggcaag
     2701 cctggatgcc atctgtgtga tgaagcgcga gcggtcatcg aacgagtcac cgccgagctg
     2761 ggggtggggt ggcaggagca gtccatccac gacgacccgg ccctggcgga gcagtactgg
     2821 gagcagattc ccgtgaccct ggtcgacggg cgccagcatg actactggcg ggtggacgaa
     2881 gcacgcctgc gggccgccct gcaggggtga ggcccccctc gacgtgacct gcctcaccca
     2941 cccgggcggc ggggtgcttg tgactttgtg catccgttca caaaagcgta atctgcaatg
     3001 gctcccgtcc gctccagcca ggtgcgggct gccctggaag agaaggagcc cccacgaccg
     3061 tgtctgccga cccgagcacc cgtcggggca ttcccgacgc tacggtcgcc cggctccctg
     3121 agtacctgcg ggcgctgacc ggtttcgcgg agcggggcat cgcctcggtc tcctccgaag
     3181 agctcgcgac tgccgcgggt gtgcgcagtg ccaagctgcg caaggacctg tcccacctcg
     3241 gctcgtacgg ggtgcgcggg gtcggctacg aggtcgacca cctggcgtac cagatctccc
     3301 gtgagctcgg cctgacccag gactggcccg tcgccatcgt cgggatgggc aacctcggcc
     3361 acgccttggc cgcctacagc gggttcgcga cgaggggctt tcgggtcgtg gcgctgctcg
     3421 accaggaccc caagctgcac gatcagcaca tcgccggcct ccccgtgcgg ccgatggagg
     3481 cactggccga gctggtcacc gaacagggtc tggcgatcgg cgtcatcgcc actcctgccg
     3541 cctcggccca ggctgtctgc gaccagctcg tgagctcggg cgtccgttcg atcctcaact
     3601 tcgcgccatg tgtgctggtg gtgccggccg acgtcgacgt gcgcaaggtc gacctgtcga
     3661 ccgagctgca gatcttggct ttccacgagc agcgcaaggc cctcgccgag ggcgccctcg
     3721 cctcggtcgc gcaggcggtc gcgcgatgag tctggtgatc ctcggactgt cccaccacac
     3781 cgcgccactg cccctcctcg aggccatgtc cctggacgcg gcagcccgca gcacgctcgg
     3841 cgccagcctc acgcggcggg acaacctgtc cgaggcgatc gtggtgtcca cctgcaaccg
     3901 caccgaggtg tatgccgagt cgcacacctt ccatggcgcc gtcaccgaca tcgccgaagc
     3961 gctgaccgag gtcaccggcg tgcctggcga cgagctgcgc gagcacctct acgtgcacta
     4021 cgaggaccgg gccatcgcgc acgcgttcac ggtggcctgc gggctggact cgatggccgt
     4081 cggcgaggcg cagatcctcg gacagatgcg cacggcgctg cgcgaaggcc agcgctccgg
     4141 ccaggtcggc cccgcgctca acagcttgtt ccaacaggcg ctgcgggtgg gcaagcgagc
     4201 ccacaccgag accggcatcg actcggtcag cgtctcgctc gtcgaggccg gtctggcccg
     4261 ggcgcagcgc gagctcggtc cgcttcaggg tctggacatc ctggtcgtcg gcgccggtgg
     4321 catgagctcg ctggcggcca ccaccgtcgc ccgtctcggc gtccgcagca tcacgatcat
     4381 caaccgcact ctggccaagg ccgcccggct cgcggagcgg gtcggtggcg tcgcgcgacc
     4441 gctcaccgag ctgagcgctg cgctggcggc tgccgacgtc gtggtgtcct gcaccggttc
     4501 gacgggtgtg gtcgtcgacc tcgctcgcgc cgcggacgct caggtcgccc gcgcgggccg
     4561 tccccaggtc tacatcgacc ttgccttgcc gcacgacgtg gccgcggagg tcgactcgct
     4621 caacggcgtc agcgtggcgg gcctgggcgc gctgggcgac gagctctccg gcggagcgac
     4681 gcccccgcag gtccaagagg tcgccgacct cgtcatcgcc gaggtcgcgg catacctcac
     4741 cgcgcgtgcc gcggaatcgg tggcacccac cgtcgcggcg ctgcggtccc acgcggccga
     4801 tgtcgtcgcg ggcgagctga cgcgcctcga ccagcggctt cccgacctcg acgaccaggc
     4861 ccgggccgag gtccagctgg ccgttcaccg catcgtcgag aagctcctgc acacccccac
     4921 cgtgcgggtc aaggagctgg ccatcggcgg gcagggcgac gactacgccc aggcgctccg
     4981 gcagctgttc gacctgcggc ccggcgaggc cgtggtcact tcggtcccac ctccggaacg
     5041 gggtggtctg ccgtgaccgc caccctgcgc ctcggcaccc gccgcagtgc cctggccacc
     5101 acccagtcca cctgggtggc cgaccagctg cgcaccctcg ggcacgaggt cgagctggtc
     5161 gagatcgtca ccgaaggcga cacatccaac gccccactga gcaccctcgg cggcaccggg
     5221 gtgtttgccg cagccctacg tcaggcgctg cttgccggcg acgtcgacct cgccgtccac
     5281 tccctcaagg atctgcccac cgagcccgag ccgggtctgg tgatcgccgc gatcccgccg
     5341 cgggaggacc cccgagacgt gctcgtcagc acctcgggcg caggcctcgg cgagctgccg
     5401 gccggcgcga tcgtcggcac cgggtcgccg cgccgcgtcg ctcagcttgc cgctctgggc
     5461 ctgggtctgg agttcaagga catccgcggc aacgtcgaca cccgtatcgc cctggcccgg
     5521 gatggcgcgg tcgacgcggt cgtgctcgcg cgggccggcc tggccaggct ggggcggctg
     5581 gccgaggtcg ccgaggtcat cgaccccttg cagatgctgc cggcaccggg ccaaggagcc
     5641 ctagcggtgg agtgccgtat ggacgacccc gccacgatca cgctcctgag cgtgctggac
     5701 gaccccgaca cccgcgccgc tgtcacggcg gaacgagccc tgctcgccgc gctcgaggcc
     5761 ggctgctcag ccccggtcgg cgccctggcc gagatcgtcg agggtcagga cggtgtcgag
     5821 ctgtcactgc gaggcttcgt cggtgccgtc gacgggtcgt tcgacctgcg acgctcagtg
     5881 gttggccccg tcggggaagc ggagtccatc ggccgccgcc tcgccagcat cctgctggaa
     5941 gacggcgccg accgcctcgt ctcgcttgac cacgcgctcg accacggcca ttggccccca
     6001 gacccacccc aggcgaccgg agaccatccg atcgccgccc ccgaccgcag cccagcaccc
     6061 aacagcacgg agcgtgcacc gtgagcc
//
LOCUS       DASYFY010000053         2125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_791807, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000053 DASYFY010000000
VERSION     DASYFY010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_791807"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2058)
                     /gene="acnA"
                     /locus_tag="VGN19_01005"
     CDS             complement(<1..2058)
                     /gene="acnA"
                     /locus_tag="VGN19_01005"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEV7194492.1"
                     /translation="MSPDPTTAEHPDTFGAKTQLAVGDRSYEIFNIKAPALADRHDVD
                     RLPYSIKVILENLLRHEDSPHVSADDVVAVASWGINPEGHGQGAGDAAHEIALTPERV
                     LMQDFTGVPGVVDLAAMRDALARLGGNASQVNPLVPVELVIDHSVIAERSGDPSAYDR
                     NVSIEYSRNMERYQLLRWAQGAFHGFRLVPPGTGICHQVNLEYLSRLVFATEEGRAFC
                     DTLVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPLSMLLPPVVGLRIAGEPEPGIT
                     ATDVVLTVTELLRDHGVVGAFVECYGPGVAALPLETRATIGNMSPEYGATCTMFPIDQ
                     VTVDYMRFTGRDAEHLALVEAYAKAQGLWHDPGAPEPVYSEYVNLDLGDVEPSLAGPS
                     RPQDRVSLGSAGDAYRVALDRSPRTAPTEPEAAPHHQMTDGDVVIAAITSCTNTSNPQ
                     VMVGAGLLAKKAVERGLRSKPWVKTSLAPGSRVVIDYLERAGLMEPLQALGFYLVGYG
                     CTTCIGNSGPLLQGVAEAVREGDLSVASVLSGNRNFEGRIHPDVRMNYLASPPLVVAY
                     ALAGTVDTDLTTDPVGQDAAGNPVFLSELWPSMDEVSETIKASLTSDMFRARYGAVFD
                     GDDYWHQVRTESGETYAWQDDSTYVKNPPFFETMTMTPAPVTDIADARVLVMVGDSVT
                     TDHI"
BASE COUNT          325 a          690 c          774 g          336 t
ORIGIN      
        1 gatgtgatcg gtcgtgacgc tgtcacccac catgacgagt acccgggcgt cggcgatgtc
       61 ggtcaccggc gcgggcgtca tggtcatggt ctcgaagaag ggagggttct tcacataggt
      121 ggagtcgtcc tgccacgcgt acgtctcgcc cgactctgtc cggacctggt gccagtagtc
      181 gtcgccgtcg aagacggcgc cgtagcgggc acggaacatg tctgacgtga gcgacgcctt
      241 gatcgtctcg ctcacctcgt ccatcgacgg ccacagctcc gagaggaaca ccgggttgcc
      301 ggcggcgtct tggccaacag gatcggtggt caggtcggtg tcgacggtcc cggccagcgc
      361 gtacgccacc acgaggggtg gcgacgcgag gtaattcatc cgcacgtcgg ggtggatgcg
      421 cccctcgaag ttccggttgc ccgagagcac cgaggccacg gacaggtcgc cctccctgac
      481 ggcctcggcc acgccctgga gcagcgggcc ggagttgccg atgcaggtcg tgcagccgta
      541 gccgacgagg tagaagccga gtgcctggag tggctccatg agtccggcgc gctcgaggta
      601 gtcgatgacc acgcgcgacc cgggtgcgag cgaggtcttg acccagggct tcgagcgcag
      661 cccccgctcg accgccttct tggccaggag ccctgcgccg accatgacct gggggttcga
      721 cgtgttggtg caactcgtga tcgccgcgat gacgacgtca ccgtcggtca tctggtggtg
      781 cggcgccgct tcgggctcgg ttggggcggt gcgcggggag cggtccagcg cgacgcggta
      841 ggcgtcgccg gccgagccca gcgaaacccg gtcctggggg cgggaggggc cggccagcga
      901 aggctccacg tcgccgaggt cgagattgac gtactcggag tacaccggct cgggtgcgcc
      961 agggtcgtgc cagaggccct gcgccttggc gtaggcctcc accagcgcga ggtgctcagc
     1021 gtcgcgcccg gtgaagcgca tgtagtcgac ggtcacctga tcgatgggga acatggtgca
     1081 ggtcgcgccg tactcggggc tcatgttgcc gatggtggcc cgggtctcga gcggcagggc
     1141 ggcgacgccc gggccgtagc actcgacgaa ggcgccgacg acgccgtgat cgcgcaacaa
     1201 ctcggtcacc gtcagcacga cgtccgtcgc agtgatgccg ggctcgggct cccctgcgat
     1261 ccggagcccg acgacaggcg gcaggagcat cgagagcggc tggcccagca tggccgcctc
     1321 ggcctcgatg ccacccaccc cccagcccag cacgcccagt ccgttgacca tcgtggtatg
     1381 ggagtcggtc ccgacgagtg tgtcacagaa cgcgcgtccc tcctcggtcg cgaagacgag
     1441 tcgagacagg tactcgaggt tcacctggtg gcagatgccc gtgccggggg gcacgagacg
     1501 gaagccgtgg aacgcaccct gggcccagcg cagcaattgg tagcgctcca tgttgcgcga
     1561 gtactcgatg gagacgttgc ggtcgtaggc ggacgggtcg cccgagcgct ccgcgatgac
     1621 cgaatggtcg atgacgagct cgacagggac gagcgggttg acctgagacg cgttaccccc
     1681 caggcgggcc agcgcgtcgc gcatcgcggc gaggtcgacc acgccgggca cccccgtgaa
     1741 gtcctgcatg agcacgcgct ccggcgtcaa ggcgatctcg tgggcggcgt cgcctgcgcc
     1801 ctggccatgg ccttcgggat tgatccccca gctggccacg gccacgacgt cgtcggccga
     1861 gacgtgggga ctgtcctcgt ggcgcagcag gttctcgagg atgaccttga tggagtacgg
     1921 caggcggtcg acgtcgtggc ggtcggccag cgccggggcc ttgatgttga agatctcgta
     1981 gctccggtcg ccgacggcca actgtgtctt ggcgccgaac gtgtccgggt gttctgcggt
     2041 cgtggggtcc gggctcatct gaccattctg cccgccgtgc gcgggcatgc ccaatgaggg
     2101 agcgactgcg ccccatcgca aaggc
//
LOCUS       DASYFY010000054         3032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_213749, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000054 DASYFY010000000
VERSION     DASYFY010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213749"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1140
                     /locus_tag="VGN19_01010"
     CDS             <1..1140
                     /locus_tag="VGN19_01010"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha amylase C-terminal domain-containing
                     protein"
                     /protein_id="HEV7194493.1"
                     /translation="VDAVINHMTGQGSTSYGGHEYTHFSYPGVYAPSDFHHTGIGPND
                     CPSTSGGIEDFNNRHQVFTCELVGLADLDTSSPTVQTRLSSYLNTLLGYGVSGFRVDA
                     AKHIGQTDLDAIYSRLHRTKDGLRPFWALEVFGGGPGVLSPQAFTTSGNVLGLDGVKQ
                     IRDAFKSYPAQHVGSIATLEAFGAGSGLTPGDKTLSFVANHDTERNGDSLNYKDGARY
                     LLANEWLLAEGYGHPQVFSGFTWNTTDDSPPADANGMITNTDCTTGAWTCTHRNPGIL
                     GMVGWHNSVGNAAQGNFWTDGDNVISFSKGNRGWAAFNNGAASQTITVQTGLSRGSYC
                     NVVDSKATRAGCTNGSAPVQVNQAGFATVTVGADSAMALDRQNRL"
     gene            complement(1244..2926)
                     /locus_tag="VGN19_01015"
     CDS             complement(1244..2926)
                     /locus_tag="VGN19_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194494.1"
                     /translation="MGHLEVNGVSFVLPDGRPLLAEVSLRVGEGARVALIGPNGTGKT
                     TLGRIVAGDLAPHGGAVTRSGGLGVMRQFVGQLRDGTTVRDLLVSVAPEPLRRAAAQI
                     DRTELLMMERDSERDQLAYAQALVTWGDVGGYDYETLWDVVTVAALGVPFERAQWRAV
                     TTLSGGEQKRLVLEALLRGPDEVLLLDEPDNYLDVPAKRWLEEQLVASPKTVLFVSHD
                     RELLNRVATRIATLEPGAGGSTLWVHPAGFPTYQQAREARNSSLEESRRRWDEEHAKL
                     KALVVMYRQKAAYNADMASRLQAAQTRLTRFEDAGPPQLVPARQNVRMRLQGGRTAKR
                     AVMAESLELTGLMRPFDLEVWYGERIAVLGSNGSGKSHFLRLVAGGGTDPEPEHQPVG
                     DHRPPPVAHSGRLRLGSRVRPGWFVQTHDHPGLVGRTLLEILHRGDDHRVGRPREEAA
                     KVLDRYGLARASEQTFESLSGGQQARFQILLLELSGATCLLLDEPTDNLDLHSAEALE
                     EGLASFEGTVLAVTHDRWFARGFDRFLVFGADGSVYESDEPVWDEQRVERAR"
BASE COUNT          507 a         1098 c          976 g          451 t
ORIGIN      
        1 gtcgacgcgg tcatcaacca catgacgggc cagggcagca cctcctatgg cggtcacgaa
       61 tacacgcact tcagctaccc cggggtctat gcaccgagcg acttccacca cacgggcatt
      121 gggccgaacg actgcccgtc cacctcggga ggcatcgagg acttcaacaa caggcaccag
      181 gtattcacct gtgagctggt gggcctggcc gatctggaca cctccagccc gaccgtccag
      241 acccggctga gcagctacct caacaccctc ctcggctacg gcgtctccgg gttcagggtg
      301 gacgcggcca agcacatcgg ccagacggac ctggacgcga tctactcgcg gctgcaccgg
      361 accaaggacg gcctgcgtcc cttctgggcg cttgaagtct tcggcggtgg cccgggcgtc
      421 ctgtcgccgc aagcgttcac cacgagtggc aacgttctcg gcctcgatgg cgtgaagcag
      481 atccgcgatg cgttcaagag ctacccggcc cagcacgtcg gcagcatcgc gacgctcgag
      541 gctttcggtg ccggctccgg cctgacgccc ggcgacaaga ccctctcctt cgtggccaac
      601 cacgatacgg agcgcaatgg cgactcgctc aactacaagg atggcgctcg ctacctcctg
      661 gccaacgaat ggctcctggc cgaaggctac ggccacccgc aggtcttctc gggattcacc
      721 tggaacacca cggacgactc tccgccagca gacgcgaacg gcatgatcac caacaccgac
      781 tgcaccacgg gggcgtggac ctgcacccac cgcaacccgg gaattctcgg gatggttggt
      841 tggcacaact ccgtgggaaa tgccgcccag gggaacttct ggacggacgg cgacaacgtc
      901 atctccttca gcaagggcaa ccgcggctgg gccgccttca acaacggcgc ggcctcgcag
      961 acgatcacgg tgcagaccgg gctgtcccga ggtagctact gcaacgtggt ggacagcaag
     1021 gccacccggg ccggctgcac caacggcagc gcgccggtgc aggtcaacca ggccggattc
     1081 gcgaccgtca ccgtgggcgc cgacagcgcg atggccttgg accggcagaa caggctctga
     1141 ccaccctctg accaccgacc ctccccgact tattgccctc aatccacgga accggaccgg
     1201 atcagcggcc agaaccgtcg attcagggca ataagtcggg agatcagcgg gcccgttcga
     1261 cccgttgctc gtcccacacg ggttcgtcgg actcgtacac cgacccgtcc gcaccaaaca
     1321 cgaggaaccg gtcgaagcct cgggcgaacc atcggtcgtg ggtgacggcc agcaccgtgc
     1381 cctcgaagga cgccaggccc tcctcaaggg cctcggccga gtgcaggtcg aggttgtccg
     1441 taggttcatc gaggagcagg caggtggcgc cggagagctc gagcaggagg atctggaagc
     1501 gcgcctgctg cccaccggac aaggactcga acgtctgctc gctggcacgc gccaagccgt
     1561 accggtcgag cacctttgcc gcctcttcgc ggggtcggcc gacccggtgg tcgtcgcccc
     1621 ggtgcaggat ctccagcagg gtccggccga cgagcccggg atggtcgtgg gtctgcacga
     1681 accagccggg ccgcaccctc gaccccagcc tcaaccgacc cgaatgggcg acgggtggcg
     1741 gtcggtggtc cccgaccggc tggtgctccg gctccgggtc ggtcccgccg ccggcgacga
     1801 gccgcaagaa gtgcgacttg ccggacccgt tgctccccag gaccgcgatc cgctcgccgt
     1861 accagacctc caggtcgaag ggccgcatga ggccggtgag ctcgagagac tcggccatca
     1921 cggcccgttt ggcggtacga cccccttgca gcctcatgcg gacgttctgc cgggccggaa
     1981 cgagctgcgg cggccccgcg tcctcgaacc gcgtcagcct cgtctgggcg gcctgcagtc
     2041 gcgacgccat gtcggcgttg taggcggcct tctgccggta catgacgacc agcgccttca
     2101 gcttggcgtg ctcctcgtcc caccggcgcc gcgactcctc cagcgaggag tttcgagcct
     2161 cgcgcgcctg ctggtaggtc gggaaaccgg cagggtgaac ccacagcgtc gagccgccgg
     2221 ctcccggttc gagggtggcg atgcgcgtcg ccacgcggtt cagcagctcg cggtcgtggc
     2281 tgacgaagag cactgtcttg ggcgaggcga cgagctgctc ctcgagccat cgcttcgcgg
     2341 ggacgtccag gtagttgtcg ggctcgtcga gcagaagtac ctcatccggg ccacgcagca
     2401 gcgcctcgag gacgagccgc ttctgctcgc cgccggacag cgttgtgacc gcgcgccact
     2461 gggcccgctc gaacgggact ccgagtgcgg cgacggtgac gacgtcccac agcgtctcgt
     2521 agtcgtagcc gcccacgtcg ccccacgtga ccagggcctg cgcataggcg agctggtcgc
     2581 gctcgctgtc gcgctccatc atcagcagct cggtgcggtc gatctgcgcc gcggctcgtc
     2641 gcaacggctc gggcgccacc gagaccagca ggtcgcggac cgtcgtgccg tcgcgcagct
     2701 ggccgacgaa ctggcgcatc acgcctagcc cacccgaacg ggtcacggct cccccgtgcg
     2761 gtgccaggtc gcccgcgacg atacgtccca gcgtcgtctt gcccgtgccg ttggggccga
     2821 tcagcgccac tcgagcgccc tcccccactc gcagcgacac ctccgcgagc agcggccgcc
     2881 catcgggcag gacgaagctg acgccgttca cctcgagatg tcccacaccc ggcagcctgc
     2941 tgcaccaagg ggctgctcgt caccttgttt gtcgcagcgt cggttcgtgg ccaggccttc
     3001 gacagtccct cggccgaacg gccgacccaa ag
//
LOCUS       DASYFY010000055         2214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1317819, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000055 DASYFY010000000
VERSION     DASYFY010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1317819"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..548)
                     /gene="rplL"
                     /locus_tag="VGN19_01020"
     CDS             complement(162..548)
                     /gene="rplL"
                     /locus_tag="VGN19_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEV7194495.1"
                     /translation="MAKLSTDELLDAFKEMTLIELSEFVKQFEETFEVTAAAPVAAAP
                     AAGAGGAAPAEEEEKDSFDVVLVAAGEKKIQVIKEVRALTSLGLKEAKDLVDGAPKPV
                     LEGVDKAAAEKAKDQLEGAGATVELK"
     gene            complement(615..1199)
                     /gene="rplJ"
                     /locus_tag="VGN19_01025"
     CDS             complement(615..1199)
                     /gene="rplJ"
                     /locus_tag="VGN19_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEV7194496.1"
                     /translation="MANAEKSAAIAEITDKFRESGAAVLTEYRGLTVAQLSQLRSSIR
                     EHATYAVVKNTLTERAAKEAGITAFDGHLQGPSAIAFITGDPVEAAKGLRDFAKAHPL
                     LVIKAGVLDGKTLSPEEITKLADLESREVLLAKLAGAMKGSLTKAAYLFVAPLSQTAR
                     VVEALRQKREEEGTATEAPAAEATTDVAEGGDES"
     gene            1510..>2214
                     /locus_tag="VGN19_01030"
     CDS             1510..>2214
                     /locus_tag="VGN19_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3152 domain-containing protein"
                     /protein_id="HEV7194497.1"
                     /translation="MTSKASDSSVRRPTPAKRQVVRRRWLAVLAVVLCLAADVWTVSR
                     AGAREPMSDRPPPQTSPGPSTTGSPVTPTDQSEQVPDTSTDSPVAAPSPGDGKDSAGA
                     VIAAGSGRFTVVSMPAAALRPTPAGGRTVRYTVEVEDGTHVSGEDFATTVGTVLTDPR
                     GWQTKDGVRFVNVPPTEAAKGAKVDLRITLASPDTTDRLCAPLETRGQVSCHNSGRVV
                     LNLRRWVLGAAAYGKDV"
BASE COUNT          310 a          772 c          775 g          357 t
ORIGIN      
        1 acggccgccg acgctccacg ccgcgagcgc cgctgcgccc ctgccctgcc agccacagtc
       61 gacccgcgac ccggcgacgc gtagacagca gaaggcgggc ccgaccactg gtcggacccg
      121 ccttcgcggt gatgctggag ccccggacta gccgggaatg ctcacttgag ctcgacggtc
      181 gcgccggcgc cctcgagctg gtccttggcc ttctcggccg cagccttgtc gacaccctcg
      241 agaacgggct tgggagcgcc gtcgacgagg tccttggcct ccttgaggcc gaggctcgtg
      301 agcgcgcgga cctccttgat gacctggatc ttcttctcac cggcggcgac gagaacgacg
      361 tcgaacgagt ccttctcctc ctcctcggcg ggggcagcgc cgccagcgcc ggccgcgggg
      421 gcggcggcga cgggggcagc agcggtgacc tcgaaggtct cctcgaactg cttcacgaac
      481 tcggagagct cgatgagggt catttccttg aaagcgtcaa ggagctcgtc ggtgctgagc
      541 ttcgccatgg tggcttcctt cctgttactt gccgtgagtg gctgattgat gaatcgagcg
      601 gacgccggtg ggcgtcagct ctcgtcgcca ccctcggcga cgtcggtggt tgcctcggcg
      661 gccggagcct ccgtggcggt gccctcctcc tcgcgcttct gacgcagagc ctcgaccaca
      721 cgggccgtct gcgacagagg agcaacgaag aggtaggcgg ccttggtgag ggagcccttc
      781 atggcgcccg caagcttggc cagcagaacc tcgcgggact cgaggtccgc gagcttcgtg
      841 atctcctcgg gggacaaggt cttgccgtcg aggacgccag ccttgatcac gaggaggggg
      901 tgtgccttgg cgaagtcacg cagacccttg gccgcttcga ccgggtcacc ggtgatgaag
      961 gcgatggccg acgggccctg gaggtggccg tcgaaggccg tgataccggc ctccttggcg
     1021 gcgcgctccg tgagcgtgtt cttgaccacg gcgtaggtgg cgtgttcccg gatcgagctg
     1081 cgcagctgcg agagctgggc cacggtcaga ccgcggtact cggtgagaac ggccgcaccg
     1141 gactcacgga acttgtccgt gatctcggca atggctgcgc tcttctcggc gtttgccatc
     1201 tgggcctcct tcccttgcgt ggtgccgccc gtcgaagggg cccggagggc ctgcacgaaa
     1261 agagccccgg cgcagggcgc tcggggctcg cagcgacata cacgaggtat gccgtgaggc
     1321 tgagtgtcct gcgctggctg cccgcaacgc gtgcggatcc ttcgggagat cgtggttgcc
     1381 cacgccctcc aaccggcggt cattggtcgt ggaccagagt acgggctcga tccgtcccga
     1441 ccaaatcggg ttcggtgctc cccggcgggt ctgtgccggt cccgtgtcgg cagcgggtag
     1501 gaatctaccg tgacatcgaa ggcgagtgac agttctgtgc gccgaccgac cccggccaag
     1561 cggcaggtgg tccgccgtcg gtggctggcc gtcctggccg tcgtgctctg tctcgcggcg
     1621 gacgtgtgga cggtctcgcg ggcgggcgcc cgcgagccga tgtccgaccg tccccctccg
     1681 cagacctccc ccggcccctc gaccactggg tcgcctgtga cgccgacgga ccagtccgaa
     1741 caggttcctg acacctcgac cgactcaccg gtcgccgccc cgagcccggg cgacggcaag
     1801 gacagcgcgg gcgccgtcat cgcggcgggg tccggccggt tcacggtcgt gtcgatgccg
     1861 gccgctgcgc ttcgccccac gccggcgggc ggacgcacgg tccgctacac cgtcgaggtc
     1921 gaggacggca cccacgtctc gggcgaggac ttcgccacca cggtcgggac ggtcctgacc
     1981 gacccccgcg gctggcagac caaggacggc gtccggttcg tcaacgtgcc gccgaccgag
     2041 gccgccaagg gtgcgaaggt cgacctgcgc atcaccctgg ccagccccga cacgaccgac
     2101 cggctctgcg cccccctgga gacgcgcggc caggtcagct gccacaactc cggacgggtc
     2161 gtgctcaatc ttcgtcgctg ggtgctcgga gcggcggcct acggcaagga cgtc
//
LOCUS       DASYFY010000056         6209 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_844782, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000056 DASYFY010000000
VERSION     DASYFY010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6209
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844782"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VGN19_01035"
     CDS             <1..557
                     /locus_tag="VGN19_01035"
                     /inference="COORDINATES: protein motif:HMM:NF020032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194498.1"
                     /translation="FPATYFASRAALLEQAPEELYPLVVKPNNGSSCERIVRVDSPEQ
                     LVDVDLDDSGYLLAQPYLPNPGYDIKLYNTGDEVFAAVRQSPLHQSTEVVEELIPVTA
                     ELRALTLAVGRAFGLDIYGIDVVETRDGWVVLDVNDFPSFGGVPDVARKLARTVLRLA
                     RQAAAAVDTSVAGSAFRSLMEASA"
     gene            554..1378
                     /locus_tag="VGN19_01040"
     CDS             554..1378
                     /locus_tag="VGN19_01040"
                     /inference="COORDINATES: protein motif:HMM:NF020032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194499.1"
                     /translation="MKICLLAEPDHNPVLTSVVDALAERHTVTVRGVQSFGVAADSEP
                     ADLADLYLLKSRSPAAQSFADRAQQLGAMVVNSPEATASALDRSVMARQLSLHDVPIP
                     RTWNCETLERMFDETTVGSMPWPLVVKSRTSRRGDLVRLVRGADELRSLLPEWSQEPV
                     SVQEYIDNDGFDIKVWVIGGQLSAAQRAGALEICDKSRDIAIDAADLPTTWSDAAFAA
                     GAALGLDLFGVDLVVRDGRPWVIDVNAFPGFQGARDPVHSMVSYLESLSTVRTVQS"
     gene            1375..2748
                     /locus_tag="VGN19_01045"
     CDS             1375..2748
                     /locus_tag="VGN19_01045"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEV7194500.1"
                     /translation="MSSSTTTSWPTPNGVAALLDDVLHADAAHPRPALSYLRRKPGRG
                     LVAVYGTGIEDMYTVTVDEATAAGQASSGAVAADPDSPQEEGVVRIGSRGMTIQRFPH
                     DDRLPALAAAIHPTKGEALWTALAAVAGAQSGQDGFDLESVVASPVRYKPGDRCVIRY
                     HLAGRGASGTLVSFSVIGKVYRTLDQARAASALSERLWSLQGPQPWTAQPLGVVDPLP
                     LVLTEDLGSALDTPAAVAGTQVVRMGRDQPSSDLAAAATALADLHLSAAAHTDTPERT
                     GAQEAVKAAARSASISAYVPELAGEATAAAQALRAAFEASAVDGLRPAHGSFKPSQLL
                     YRAGLVFLVDFDQFCLADPALDLGYFLAYLRPPGLWYHRSGTRTWFDAAAASFLAAYG
                     VAARARGMRDEELEGVLRRCHVYEAALLLKIAARRPNRLHSPRPGEVRSLLEEVIACL
                     VASEETA"
     gene            complement(2809..4725)
                     /locus_tag="VGN19_01050"
     CDS             complement(2809..4725)
                     /locus_tag="VGN19_01050"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEV7194501.1"
                     /translation="MMELSPGAEIAGYRIESVIGRGGMAVVYRAEDSRLGRKVALKLL
                     APALAQNQHFQQRFIRESRLAASLDHPNIVPIYEAGESEGHLFIAMRYVHGSDLKGVL
                     AQDERISTARLLRLFVQIGDALDAAHLLGLVHRDVKPGNILVSSVMEHSGHAHPDHVY
                     LTDFGLTKRTSSLSGSMTETGHFLGTVDYVSPEQIQGGPVSPATDTYALGCVLYESLT
                     GQLPFNRDDDAAVLWAHLVEMPPPVTAARPDLPPAIDDVVARAMSKAPEDRYDACSEM
                     MRDLEQALAADTDLSGLHSASTRSAARHRRATGADSAASAVEGPAPPGQIERVPPLPE
                     DPDATAAWVSHPSLPPGAIAPPTWPSGPEAGIDKTPDDEWSEAGAEDEQERVAYDSDE
                     YEQDAYEGDAYAGDESAAVWYPDDDGSEDATGAGAERIARRRPWWLLPAAALAVLTLV
                     GVVAFYLVQSGRPEPMTTYTATSQESAVPFSVSHPQTWATVSGGNDFVIAPRAHEIAT
                     VFTGQGGWGSGSRVVESSPDEAVGVYVTSGRTPLAAGGTFLQDWLVGILQNSDVTNLT
                     SPTQATISGLPAYELEGALANRQPRGSTLHAMFVVIQSSKGPVLMTFFAPQSRYDAER
                     PLFATMLTSMRVDR"
     gene            complement(4735..>6209)
                     /locus_tag="VGN19_01055"
     CDS             complement(4735..>6209)
                     /locus_tag="VGN19_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194502.1"
                     /translation="ADPFIRQHIGPSTDRIEQRLQACYPPHLSLQDAGGCVTRKQLDF
                     VVYPFVTSQATDGNLPAEALAGKSTSDVGLLRVQTNGVPTVRLAPALPTDYALDVLGF
                     VGTPGPVSSVPDPKNLNPHGEHDIAQHFAPIGGPILKSVALKPDEAAGSAMLKQQLGK
                     GIEGGPVVDGGKDAASGGQVIGLIPAPAPPGQPVPTLVGATTILSVLKNAGVTNQSSL
                     ASAQFEAAMHHFKNQEYAASIPYFVNSLKQFRGQALATADLAKARDEVTAGRGSPKVN
                     TATSTTGPPGSGGSGGSGGSSRTILLTIGLVAAALVALVVLGLALRARRREAGKDVTT
                     PSGGSTPTPVPVGGGPRHGSQPSPGGAPGAARVPMAHVPRDGAPAAPSTRSAAPRTAE
                     RPGLPHRGSSSPPPPPNQPSRRRPSPAQPSTNQPSTNQPSTIDRSTDNNPSPVPHLMA
                     EAQPAGTAPSSHWTAFCTSCGARLSERHRFCGLCGAPVGQ"
BASE COUNT          921 a         2107 c         2163 g         1018 t
ORIGIN      
        1 ccttccctgc cacctacttc gcctccaggg ccgcgttgct cgagcaggct cccgaggagc
       61 tctacccact ggtggtcaag ccgaacaacg gaagctcctg tgaacggatc gtgcgggtcg
      121 acagtccgga gcagctcgtc gacgtcgacc tcgacgacag cggatacctc ttggcccagc
      181 cgtacctgcc caacccgggc tacgacatca agctctacaa caccggggac gaggttttcg
      241 ccgctgtccg gcagtctccc ttgcaccagt caacggaggt cgtggaggag ctgatccccg
      301 tgacggccga actacgcgcc ctgacgctgg ccgtcggccg cgcgttcggt ctcgacatct
      361 acgggatcga cgtcgtcgag acccgtgacg gttgggtcgt cctggacgtc aacgacttcc
      421 cgagcttcgg tggggtgccg gacgtcgccc gcaagctcgc ccgcaccgtc ctgcggctgg
      481 cccgccaggc cgcagccgcg gtcgacactt ccgtcgccgg gtccgccttt cgtagcctga
      541 tggaggcctc agcatgaaga tctgcctgtt ggcggagccc gaccacaacc cggtcctcac
      601 ctccgtggtg gacgcactcg ccgagcggca caccgtcacg gtgagagggg tccagtcgtt
      661 cggcgtggct gcagactccg agccggcaga cctcgccgac ctgtacctgc tcaagtcccg
      721 ctcaccggcg gcgcagtcct tcgcagaccg ggcgcaacag ctcggggcga tggtggtcaa
      781 cagcccggag gcgacggcga gcgcgctgga ccgctcggtg atggcccgtc agctcagcct
      841 ccacgatgtt cccatcccac ggacctggaa ctgtgaaacg ctggagcgga tgttcgacga
      901 gacgacggtc ggcagtatgc cgtggccgct ggtcgtcaag agccgcacca gccgccgtgg
      961 tgacctcgtg cgcctggtcc gcggtgcgga cgagctgcgc tccctgctcc ccgagtggag
     1021 ccaggagccc gtatcggtgc aggagtacat cgacaacgac ggcttcgaca tcaaggtctg
     1081 ggtcatcggc ggccagctct ctgctgccca gcgcgccggc gctctggaga tctgcgacaa
     1141 gtcccgtgat atcgccatcg acgcggcgga ccttcccaca acgtggtcgg acgccgcctt
     1201 cgctgccggt gcggctctag gcctggacct cttcggtgtc gatctcgtgg ttcgggacgg
     1261 ccgcccgtgg gtcatcgacg tcaacgcctt ccccgggttc cagggggccc gcgatccggt
     1321 gcacagcatg gtcagctacc tcgaatccct ttcaacagta aggacggtcc agtcatgagc
     1381 agctccacca ccacgagctg gcccacgccc aacggcgtcg ccgccctgct ggacgacgtg
     1441 ctgcacgccg acgcagccca cccccgcccc gcgctcagct acctgcgtcg caaacccggc
     1501 cgtgggctcg tcgccgtgta cggcactggt atcgaggaca tgtacaccgt gacggtggac
     1561 gaggcgacgg ccgccgggca ggcgtcctcg ggcgctgtcg ccgccgatcc ggacagcccg
     1621 caggaggaag gcgtggtgag gatcggaagc cgggggatga cgatccagcg cttcccgcac
     1681 gacgaccggc tacccgctct ggcggccgcc atccacccga ccaagggaga ggcactgtgg
     1741 accgcactcg ctgccgtggc gggcgcccag tctggacaag atgggttcga ccttgaatcg
     1801 gtagtggcgt ccccggtgcg ctacaagccg ggggaccggt gtgtgatccg gtaccacctg
     1861 gccgggcgcg gggcctcggg aacgctcgtg tccttctcgg tcatcggcaa ggtgtaccga
     1921 accctggacc aggcccgcgc agcctccgcc ctgtccgagc ggctgtggag cctgcaggga
     1981 ccccagccgt ggacggcgca accgctgggc gtcgtcgacc cgctacccct tgtcctgacg
     2041 gaggacctag gcagcgcact cgacacgccg gcagcagtcg cgggcaccca ggtcgtccgg
     2101 atgggaaggg accagccctc ctcggacctc gcagccgccg caacagccct ggccgacctt
     2161 cacctgagtg ccgccgccca caccgacaca cccgagcgca cgggggccca ggaggccgtc
     2221 aaggcagcgg cacggtcggc cagcatctcg gcatacgttc ctgagctggc cggcgaggcg
     2281 acagcggccg cccaggcgct ccgtgcggcc ttcgaggcat cagctgtcga cggtcttcga
     2341 cccgctcacg gatccttcaa gcccagccag ttgctctacc gggcgggctt ggtgttcctg
     2401 gttgacttcg accagttctg cctggccgac ccggccctgg acctcggcta cttcctcgcc
     2461 taccttcggc caccaggcct ttggtaccac cggtcaggca cccgcacctg gttcgatgcc
     2521 gcggcggctt cgttcctcgc ggcttacggc gtggcggcgc gcgcccgggg gatgcgggac
     2581 gaggagctcg agggagttct gcgtcgctgc cacgtctacg aggcggcact gctcctcaag
     2641 atcgcggccc ggcgacccaa ccgcctgcac agtccccgcc caggcgaggt ccgctcactt
     2701 ctcgaggaag tcatcgcctg cctcgtcgcg agcgaagaga cggcgtagct ggggtcgtca
     2761 cgtccggaac gacctgcccc cctcccttcg cccctcaccg aggatggctc atcgatccac
     2821 ccgcatgctc gtcaacatcg tcgcgaacag tggccgttcc gcgtcgtagc ggctctgcgg
     2881 agcgaagaag gtcatgagga ccggcccctt cgaggactgg atgacgacga acatcgcgtg
     2941 cagggtgctg ccgcggggct ggcggttcgc cagggcgccc tccagctcgt aggcaggcag
     3001 gccactgatc gtcgcctggg tgggcgacgt caagttggtc acgtccgagt tctgcaggat
     3061 gcccacgagc cagtcctgga ggaaggtccc gccggcggcc aggggggtcc gtcccgacgt
     3121 cacgtacaca cctaccgctt cgtcgggaga ggactccacg acccggctac cgctgcccca
     3181 accgccctgc cccgtgaaca cggtggcgat ctcgtgcgcc ctcggcgcga tcacgaagtc
     3241 gttgccaccg gacaccgttg cccaggtctg aggatggctt acggagaagg ggaccgccga
     3301 ctcctggctc gtcgctgtat acgtcgtcat cggttcgggc cggccggact ggaccagata
     3361 gaacgccacg acaccgacca aggtgagcac cgccagcgcg gcggctggca ggagccacca
     3421 gggcctacgg cgagcgatcc gttcggcccc tgccccagtc gcgtcttcgg aaccatcgtc
     3481 gtccgggtac cagactgcgg cactctcgtc cccggcatac gcgtcgcctt cgtacgcgtc
     3541 ctgttcgtac tcgtccgagt cgtacgccac gcgctcctgc tcgtcttcgg cgccagcctc
     3601 cgaccattcg tcatcaggag tcttgtcgat gccggcctca gggcccgatg gccacgtcgg
     3661 cggggcgatg gccccgggcg gcagggaggg gtgggacacc caggcggccg tggcgtccgg
     3721 gtcctccgga agtggtggca ccctctcgat ctggccgggg ggcgccgggc cttcgaccgc
     3781 ggacgctgcc gagtccgctc ccgtggcgcg ccggtgtcgt gctgcggaac gggtggaggc
     3841 gctgtgcagg ccggacaggt cggtgtcggc ggcgagggcc tgttcgaggt cccgcatcat
     3901 ctcgctacag gcgtcgtagc ggtcctcggg cgccttgctc atggctctcg ccaccacgtc
     3961 gtcaatggcc ggcggaaggt ccggacgcgc ggcggtcacg ggcgggggca tctccacgag
     4021 gtgcgcccac aggactgcgg catcgtcatc ccggttgaag ggcagctggc ccgtcaggct
     4081 ctcgtacagc acgcagccga gggcgtaggt gtcagttgca gggctgaccg ggccgccttg
     4141 gatctgttcc ggtgacacgt agtcgaccgt gccgagaaag tgtcccgtct cggtcatcga
     4201 gccggacagc gacgacgtgc gcttggtcag cccgaagtcg gtcaggtaca cgtgatcggg
     4261 atgggcgtgg ccggagtgct ccatcaccga gctgaccagg atgttgccgg gcttgacgtc
     4321 gcgatggacg agaccgagga ggtgagccgc atccagtgca tcgccgatct gaacgaagag
     4381 tcgcagcagc cgtgccgtcg agatgcgctc atcctgcgcg agcacgcctt tgaggtcgct
     4441 gccgtggacg tacctcatcg cgatgaacag gtggccctca gactcaccgg cctcgtagat
     4501 cggcacgatg ttggggtggt ccagagacgc cgccagtcgc gactcccgga tgaagcgctg
     4561 ctggaagtgc tggttctggg ccagagccgg agcgagaagc ttgagggcca ccttccggcc
     4621 caggcggctg tcctccgctc ggtagaccac cgccatgccc ccgcggccga tcactgactc
     4681 gatccggtag cccgcgatct cagccccggg actgagttcc atcatgggtc cccctcattg
     4741 tccgacaggt gcaccacaca gaccgcagaa gcggtgtcgt tccgaaagcc ttgctccaca
     4801 ggacgtgcag aaggccgtcc agtgggacga aggtgcggtg cccgccggtt gggcctcggc
     4861 catgaggtgc gggacgggag aggggttgtt gtccgtggag cggtcaatgg tcgagggctg
     4921 gttcgtcgag ggctggttcg tcgagggctg ggcaggtgag ggtcgtcgtc gcgagggctg
     4981 gttaggagga ggcggtgggc tggaggagcc ccggtggggc aggccggggc gttctgcggt
     5041 gcgcggggcg gcagatctcg tggacggcgc tgctggggcg ccgtcccgcg gtacgtgcgc
     5101 catcggcact cgggcggcgc ccggcgcacc gccaggggac ggttgggatc catgtctcgg
     5161 accgccgccg acgggtaccg gtgtgggggt ggagccaccg gatggcgtcg tgacgtcctt
     5221 gcccgcttcg cggcgacgcg cacgtagcgc caggcccagt acgaccagag cgacgagcgc
     5281 tgccgcgacg agtccgatgg tgagcaggat cgtgcgcgat gagcccccgg agcctccgga
     5341 gcccccggag cccggggggc cggtggtcga cgttgccgtg ttcaccttcg ggctacctcg
     5401 ccccgctgtg acttcgtccc ttgccttggc caggtccgcg gtcgccagtg cttggccccg
     5461 gaactgcttg aggctgttca cgaagtaggg gatcgatgcg gcgtactcct ggttcttgaa
     5521 gtggtgcatg gcggcttcga actgtgcgga agccaagctg gactggttcg tcactccagc
     5581 gttcttgagc acgctgagga tcgtcgtggc accgaccagg gtcggtacgg gctggcccgg
     5641 gggtgccggt gctggtatca gaccaatgac ctgtcccccg gaggcggcgt ccttgccacc
     5701 atcgaccacc ggtccgccct cgatgccttt gccgagctgc tgcttgagca tcgcggaacc
     5761 cgcggcctca tccggtttga gcgctaccga cttgaggatg ggcccgccga tgggggcgaa
     5821 gtgctgggcg atgtcgtgct cgccgtgagg attgaggttc ttggggtccg gcacgctgga
     5881 gacggggccc ggagtgccga cgaaccccag cacgtcaagg gcgtagtcgg tcggcagggc
     5941 tggagcaagc cgcaccgtcg gtacgccgtt ggtctgcacg cgcaggaggc ccacgtcact
     6001 ggtggatttg ccggctagcg cctcggcggg gaggttgccg tccgtggcct gggaggtgac
     6061 gaaggggtac accacgaagt cgagctgctt cctggtcacg cagcccccgg cgtcctgaag
     6121 gctgaggtgg ggcgggtagc acgcctgcag ccgctgctcg atacggtcgg tgctgggtcc
     6181 gatgtgctgg cggatgaagg ggtccgccg
//
LOCUS       DASYFY010000057         3981 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_687293, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000057 DASYFY010000000
VERSION     DASYFY010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3981
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687293"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(492..1853)
                     /locus_tag="VGN19_01060"
     CDS             complement(492..1853)
                     /locus_tag="VGN19_01060"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: protein motif:HMM:NF009492.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEV7194503.1"
                     /translation="MIQRMVLFGASGDLTSRLLMPAVAELAERDALPHGLRIVGAANT
                     DWTTEQFREHIATGLRAHSSASVAAQSQVVDMLSFLPADVTEPADVRRVVGQDGPATL
                     VYLALPPVLLRSAVRALATAGLGASDAVAIEKPFGTDLASAKELNETIRVQLAAPTIF
                     RVDHFLSSELVRRVVSLRFLNRVFAPAWNSEHIDHVDISWLEDLTLEGRASYYDGAGA
                     MKDMLQNHLMEVMALVMMEQPARLDAASFRAVRVEALRAVSTPAPERLRSTTVRARYT
                     AGSIGARSVPSYVDEPGVDPRRSTETYAALILGAGSPRWSGVPFTIRSGKALERPSAE
                     IAVHFRALPRYLTDQWPGVEPNVLRIGLTEPYVRLSTTLNGPGQAVERRQLEAVSAPP
                     RMTAYAHLVAEMLNNDPMLFIRGDEAEEAWRIVEPVMRGWSAGAVPLQEYRAGAIAPG
                     PME"
BASE COUNT          635 a         1324 c         1408 g          614 t
ORIGIN      
        1 gagcagtgtg atggcgatgg caaagacgcc gtcgctgaac gcttccagtc gggtcttgct
       61 caaggaacga cgaggcttcc aagaacttcg gggtccggcc acgcgcctgc ctcctggtcg
      121 tccagccttg acggtcaagc agcccgaccc gattccggga cccagaacga ctcgacatgg
      181 ggtgtcgtga atccttgccg cgcttcgaca cggccctaga cgtgaacatg caccggaggt
      241 cggacttggt cacgtgacga cctctccacg acattgcttg ggagtcggtc gccgcccagt
      301 acgaaactca gtccacgtta cccgtcaggg atgctcgagt ggcgtttcgc tgagtcttgg
      361 agccgtacgc cgaggaccgg ttggcccgca gaccggcgca ggtgtgcgga gtcccggggt
      421 cgaatgagtg ctcaggcagg cggcgtacga ccgcgtacga gccgagggcg gagcgaagtt
      481 cgaggttggt gctattccat agggccgggc gcgatggcgc ccgctcggta ctcctgcaac
      541 gggacggcgc cagcggacca cccgcgcatc accggctcga cgatgcgcca agcctcctcg
      601 gcctcgtcgc cccggatgaa cagcatgggg tcgttgttca gcatctccgc caccaagtgc
      661 gcatacgccg tcatccgagg tggcgccgag accgcctcca gctgtcgccg ctcaactgcc
      721 tgcccgggcc cgttgagcgt cgtcgacaag cgaacgtagg gctcggtcag cccgatgcgg
      781 agcacgttcg gctcgacgcc gggccactgg tcggtcaggt accgcgggag ggcacggaag
      841 tgcacggcta tctccgcgga gggccgctcg agggccttgc ccgagcggat ggtgaacggg
      901 accccggacc agcgggggct gccggcgccc aggatcagcg cggcatacgt ctccgtgctg
      961 cgtcgggggt caaccccggg ctcgtcgacg tacgacggga ccgagcgcgc accgatgctg
     1021 ccggcggtgt agcgagcgcg caccgtggtg cttcgcagcc gctcaggtgc tggtgtcgag
     1081 acggctctga gcgcctcgac ccggacggcg cggaaggacg cggcgtccaa tcgagccggc
     1141 tgctccatca tcacgagtgc catgacctcc atcaggtggt tctgcagcat gtccttcatc
     1201 gccccggccc cgtcgtagta ggaggctcgg ccctccaggg tcaggtcctc caaccagctg
     1261 atgtcgacgt ggtcgatgtg ctcggagttc caggccgggg cgaacacacg gttgaggaag
     1321 cgcagggaga ccaccctccg gacgagctcg ctgctcagga agtgatcgac gcggaagatc
     1381 gtgggggccg cgagctggac ccggatggtc tcattgagct ccttcgccga ggccaggtcg
     1441 gtgccgaacg gtttctcgat cgcgacagcg tccgacgcgc cgagccccgc cgtggccagg
     1501 gcccgcacgg ccgaccgcag caggacgggt ggcagcgcca ggtacacgag ggtggcgggc
     1561 ccgtcctgac cgacgacgcg tcggacgtcc gcgggctcgg tgacgtcggc cggcaggaag
     1621 ctgagcatgt cgaccacctg gctctgggcc gccactgacg ccgacgagtg cgctcgcagg
     1681 cccgtggcga tgtgctcccg gaactgctcg gtcgtccagt cggtgttggc cgcgccgacg
     1741 atgcgcaggc cgtgcgggag ggcgtcgcgc tcggcgagct cggccactgc cggcatcagg
     1801 aggcggctgg tgaggtcgcc agaagctccg aagagcacca tgcgctggat catgacgagc
     1861 ctttctcgtg tgggtcggcg caccggggcg cgggggtccc gtgacagcgg gtcgagggct
     1921 gaagaccgcc gcggccagca gctggcccgg gcgcgcttcc cgggtggaag gtcgaaccag
     1981 gaggtcgtga tgtagcagtg ccccggtcgg ggccaccgaa cgcaccgacg tcgggttgct
     2041 cgttggaccc ctgacgaccc cgtcgaggat gtcgtccggc cggtagcggt gcacggcacc
     2101 agcacgccag caggcgaccc aaagtgtgtc ctcgtcatca atcgtcattc cgtcgggcca
     2161 gaacccctcg tcgaggaggt cgacgaagcg tcgacgaccg ctcaccgcat cggtcgtcgg
     2221 atccaggtcg acaacgtcca cgcggaacac cgcggtgtcc gcccggtagg tccgtgcgcg
     2281 gacctcgtcg agggcgggcc cgttggagat cgtcaggccg tcgatgaccc gggtggcgtg
     2341 cctcgaggcc acgcgataga gcgccgcgtt ggcggcccgc ttgtcaaagg ccatggtgcc
     2401 cagccagcac cggccgtggc tgtcggcctt gacgtcgttg gcccggttct ccggccggtc
     2461 ctgctcgact gcgcccggta gtgaggtccg gccggtgtcc gggtcgaaga gcgtgaggct
     2521 cctcaggagc cgtcacgagg ggacgcccga gcgtgtcgat gacgacgccg ccgggctgcc
     2581 acggcagcct ccagacccgg tcgtcgccag tctgggggcc gcagcaccgc acggcctgcc
     2641 cggtgatgtc cacccacccc agacggctgg tcgcggcgtc ccagattggc ccgtcaggat
     2701 cctctgcccc gggcccgcca gccacctcga cgggcacgtc acccatgaca ccccttgaag
     2761 tccgatcgtc gccggttgtc gcggcacaga ccagccgcct tctgagtgtg tggctctgac
     2821 cccgctcgag catcactcca ggcggatgac gtggctcggc ggggagcggc gtagaaacga
     2881 ccttgcgtag ccagtcaggg aggggcatca ccgctggggc cgacaccgca gcagccaggc
     2941 acgtccgacg aaggaggaga gccatgaagg tcatcgtcgt gggcggggtc gccgggggtg
     3001 cttcgtgccc gcacgtcttc gtaggctcga cgagcacgcg gagatcgtca tggccgaacg
     3061 gggtccatac gtctccttcg cgcactgcgg tctgccgtac cacgtggggg cgtgatcgag
     3121 cacgagtccg acctgctggt ggccaacgag taggtgttcc gagggcactt cgccgtcgac
     3181 tgccggcccg ggtgtgaggc ggtcggcatc gacgcgcacg ccaagaccgt ggaccttcgc
     3241 gacgtcgcct ccggatcggt gaccactgag tcctacgaca cgttggtcct ggcgccgggc
     3301 gcgccactaa gtgcacaaca cgatgagcgc acatcggcag atcagctgat ttcgaacctg
     3361 ggggagtggc gcgtggttgg aatggcgcgc agtcgagcct caagtcgagc ctcaagccga
     3421 gtgccggagt tgagggacta agtgagtgac aatggccgtg gccggagcca actcacacgg
     3481 actttgctgg accgagttga gcacggatcg gttcgaggtg cctgggtcat tcgcgttgac
     3541 accccgaagg atggggggcg ggtgcttctc gaagcggtcc gtcgtcgtcg ggggcgtgac
     3601 tcgactgcgc cgcccgtgac gcaggcctcg cgtcacatga ccactgcata gccctccctc
     3661 gtcgaagagc aacattgaca tggcgccgcc acccggacgc cgccggcgaa ctggtcgtca
     3721 gcccgacgcc ataggggagc gccgcggaca tcggggccat cgccgaggtc tgccacgaac
     3781 ggggcaagcc cctgatcgtg gacgaagcgt gggggcgcac ctgcccttcc acgaggaact
     3841 gcccacgtgg gccatgaacg ccggcccgga cgtgtgcgtt gtcagcctgc acaagatggg
     3901 cgccggactg gaacagggct ccgtgttcca cgtccaggcc gacccggtcg acccctccca
     3961 catctctacc tgcgcagacc t
//
LOCUS       DASYFY010000058         1527 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_844964, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000058 DASYFY010000000
VERSION     DASYFY010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844964"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..1439
                     /locus_tag="VGN19_01065"
     CDS             141..1439
                     /locus_tag="VGN19_01065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194504.1"
                     /translation="MAATAARATSTQIHALLLPLLLDTGDGEVEGAAEIVAGGDVVVG
                     GLDTGTIGTTVIGGRVVGGWVVGGSVVGGGGVVGGGTALVGSAVDGRGERLRSTVGRA
                     IGVCVGATPADDDGLTNGEREPLAPAAPDEPPPPQPAAVTVTAATTPAVAHRRQTLAR
                     RRSIMSPVVAVDQNRRDWQVVVASPPPGDQGTSPSRGNARPRCCHAGSCPVTTDPREA
                     YMAVETVQERAGRPYPTWLRRPALAIPVFLVGLALAIGLGTDSAGGTWRWTGFQDNNH
                     LWDWMHLLLLPIVLTVLPIWRARQRRRHRAEGSLLAAFALVFAVVVLCGYLVPWAWTG
                     FTGNTLWDWLNLLALPVSLALLPVWLGREHVRGWEKPAVIGLGVAFAAVIVFGYAMPW
                     DWTGFVGNTLWDWLQMLLVPFAIPAAVVVLTHRQSSSSAS"
BASE COUNT          221 a          513 c          548 g          245 t
ORIGIN      
        1 tatcgatgtc ccgggccgcc gccggcaaca aagaccgggc gagcagcgcc gagtcgagca
       61 agggagccac ggtgcggcgc cacgccagcc actgctccct gcgcctgcga cgtcgcagca
      121 ccagcacgat ggcgatcgcg atggctgcca cggccgccag ggcgacaagc acccagatcc
      181 acgcattgct gctgccgctg ctgctcgaca ccggagatgg cgaggtcgag ggagcagcgg
      241 agatcgtcgc tggaggggac gtcgtcgtgg gcgggctgga cacgggcacg atcggaacga
      301 ccgtgatcgg tggccgggtc gtcggtggtt gggtggtcgg tggctcggtc gtagggggcg
      361 gtggcgtcgt cggtggtggc accgcactcg tgggatcggc tgtcgacggc cgtggcgagc
      421 ggctgagatc caccgtcggt agggcgatcg gtgtctgtgt gggtgccaca cccgccgacg
      481 acgacggtct gaccaacggc gagcgcgaac cgctagcccc ggccgctccg gacgagccac
      541 cgccgccaca gcctgcggcc gtgacggtga cggccgcgac cacgcccgca gtggcgcacc
      601 gccgccagac cctggcccgt cgtcgcagca tcatgtcccc agtcgtcgct gtcgaccaga
      661 accgtcgcga ctggcaggtc gtcgtcgcat cacccccacc gggtgaccaa ggaacatcgc
      721 ctagccgcgg aaacgctcgc ccgcgttgct gccacgcggg atcatgccca gtaacgactg
      781 accctcggga ggcgtacatg gcggtcgaaa cggttcagga gcgcgcaggg cggccgtacc
      841 caacgtggct gcggcgcccg gccctcgcga tcccggtgtt cctggtgggg ctggcactgg
      901 ccatcgggct cggtacggac tccgccggcg ggacctggcg gtggaccggc ttccaggaca
      961 acaaccacct ctgggactgg atgcacctgc tcctgctccc catcgtgctg acggtgttgc
     1021 cgatttggcg cgcccggcaa cgtcgacggc atcgggccga gggaagcctg ctcgcggcgt
     1081 tcgcgctggt cttcgccgtg gtcgtgctct gcggttatct cgtcccttgg gcctggaccg
     1141 gattcaccgg taacacgctc tgggattggc tcaacctgct cgccctgccg gtcagcctcg
     1201 cgttgctacc ggtgtggctg ggccgcgagc acgtgcgcgg ctgggagaag ccggcggtaa
     1261 tcgggttggg cgtcgccttt gccgcggtca tcgtgttcgg ctacgccatg ccgtgggact
     1321 ggaccggttt cgtcggcaac acgctctggg attggctgca aatgctcctg gtgccgttcg
     1381 ccatcccggc tgcggtggtc gtcctgacgc accggcaaag cagcagctca gctagctagc
     1441 ccagtccgcg tacgaggtag gccagaaact cgcgcagctg atcaggatcg tcggcgtcca
     1501 cggcgtcgcc ggggatcgtc acgagtg
//
LOCUS       DASYFY010000059         1635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_109291, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000059 DASYFY010000000
VERSION     DASYFY010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109291"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            532..>1635
                     /locus_tag="VGN19_01070"
     CDS             532..>1635
                     /locus_tag="VGN19_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017203857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7194505.1"
                     /translation="MPVGGTTEPTEPSENLTAAEAEQARIEAEAQLAGAAPGSDYDAS
                     AITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEIVDNSVDEALAGYADTINVALLADG
                     GVRVEDNGRGIPTDIHPQEGKSAVELVLTQLHAGGKFGGSGYKVSGGLHGVGSSVVNA
                     LSSRLDAEVYQKGHVFRMSFDHGVAVEPLERGEASDRTGTTITYWPNAEIFETTNHDF
                     ETIRARFQQMAFLNKGLTINLVDEREPESAEAEAETIDEAERKPREVSYRYDGGLVDY
                     VNHLVGSKRSEPVHKEVISIEAEDVERQLSLEIALQWTTAYSESVHTYANTINTHEGG
                     THEEGFRAAMTKLINDFARKQNLLKDKDDNLTGD"
BASE COUNT          296 a          547 c          575 g          217 t
ORIGIN      
        1 gtcgagtagg tcgcggcagc ccccgtcgcg ccgtcgaccg agtcgggggt cggcggtttg
       61 atcgtcagcg tgggcgtcga cagcccgtcg agcgctgcgc atcccgtcag tgccgtcgtc
      121 gcggccagcg ccagggcggc gacgccccct cgtctcgttc tcggctctcc ccgcatggct
      181 gaggaccgta gggcgcaggt gggcccggag tccccgaaat cggcataaac catccgatcg
      241 gaggactcca cggccgggac tgcgggaagg ccggtatgcc gcgacggggg cccggggcgc
      301 gtaccgggac tcgggcgagc ccacgaattt gcgggaaatg tgggctgacg ggcctcctga
      361 ggcagtgtca gtcagccgcg acaggtagac tgtcacaaga aatcgcgacc agctggtctc
      421 cagtctggtc gcgtgccatg agcggcgtga agtggggtct gctcgaccaa gcgagccacc
      481 ccgccgcgcc cacggagaag gagcaccgtg tccgaggctg accagacgcc catgcctgtc
      541 ggcggtacca ccgagcctac cgagccctcc gagaacctga cggcagccga agccgagcag
      601 gcccggatcg aggcggaggc ccagctggcg ggggcggctc cggggtcgga ctacgacgcc
      661 agtgccatca ccgtgctcga gggtctggaa gcggtgcgca agcgccctgg catgtacatc
      721 ggctcgaccg gtgagcgcgg cctgcaccac ctggtgtggg agatcgtcga caactcggtc
      781 gacgaggcgc tggccggcta tgcggacacg atcaacgtgg ccctgctcgc cgacggcggg
      841 gtacgggtcg aggacaacgg tcgcggcata cccaccgaca tccacccgca ggagggcaag
      901 tcggccgtcg agctggtgct gacccagctg cacgcgggcg gcaagttcgg cggcagcggc
      961 tacaaggtgt ccggtggcct gcacggcgtg ggctcctcgg tggtcaacgc cctctcgagc
     1021 cggctcgacg ccgaggtgta ccagaagggc cacgtcttcc ggatgtcgtt cgaccacggc
     1081 gtggcagtgg agccgctgga gaggggcgag gcgtccgacc gcaccgggac gacgatcacc
     1141 tactggccca acgccgagat cttcgagacc acgaaccacg acttcgagac gatccgggcc
     1201 cgcttccagc agatggcgtt cctcaacaag gggctgacca tcaacctggt cgacgagcgc
     1261 gagcccgaga gcgcggaggc ggaggccgag acgatcgacg aggccgagcg caagcctcgc
     1321 gaggtgtcgt accgctatga cggtgggctc gtcgactacg tgaaccacct ggtcgggtcc
     1381 aagcgctcgg agccggtcca caaggaggtc atctcgatcg aggccgagga cgtcgagcgg
     1441 cagctctccc tcgagatcgc gctgcagtgg acgaccgcgt actccgagtc ggtgcacacc
     1501 tacgccaaca cgatcaacac ccacgagggc ggcacccacg aggagggctt ccgcgcggcg
     1561 atgaccaagc tcatcaacga cttcgcccgc aagcagaacc tcctcaagga caaggacgac
     1621 aacctcaccg gcgac
//
LOCUS       DASYFY010000060         1932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_372227, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000060 DASYFY010000000
VERSION     DASYFY010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372227"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..922)
                     /locus_tag="VGN19_01075"
     CDS             complement(116..922)
                     /locus_tag="VGN19_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEV7194506.1"
                     /translation="MSETTRLDVELVRRGLARSRGHARSLVDAGDVSVCGSLATKAST
                     PVADRDTIEVREAGPRWVSRAAYKLLGAFEVFGPQGLTVSGRRCLDVGASTGGFTQVL
                     LHHGAAQVVALDVGHGQLVPTLADDPRVEDRSRTTIRGVLPDTLGGPFDLVVADLSFI
                     SLTLVLETLRGLVRDDGDVVVLVKPQFEVGRTRLGKGGIVRAQGDRAWAITEVARVAL
                     DAGLHPRALAASPIDGSEGNAEYLLWLTPRAEESMGWEAVVRTADQVSAP"
     gene            complement(919..1173)
                     /locus_tag="VGN19_01080"
     CDS             complement(919..1173)
                     /locus_tag="VGN19_01080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194507.1"
                     /translation="MTEHSEQHSPQHSEQHSPPDAHPETDRTPPSSTDLGDHATGDLV
                     VDAALQDLQNAPADDLDAQLEAAGRVHQTLQARLSDLGGA"
     gene            complement(1170..>1932)
                     /locus_tag="VGN19_01085"
     CDS             complement(1170..>1932)
                     /locus_tag="VGN19_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194508.1"
                     /translation="RGGPMAFESVRSYVQLASGLGEMTKARAMDAAQGLLALPGADEV
                     SRRAVQVSTLADQLLEAARANRASLVSLVQAEVETALKRAEVARVADLDAARRALGLL
                     GKEVAELRTALATSGAAAVSSAARVPGRAIPRSAAVSTAVRGDGHPGLLDPSSSPSSA
                     AAPSAPAPAARRRPTARRTPAKRPVSRAATTATAQRASATPNKTAVKKTAAKAAPAKK
                     TAAKKTAVKKTAAKKAPVKKTTAAARKSTTTKATQ"
BASE COUNT          263 a          708 c          651 g          310 t
ORIGIN      
        1 tcgaccaccc cgaccgcgac ctcggcggcc tcctggcgtc gagggtgggc gacgagcagg
       61 atcttgcggt gtgggctcgg ctcgctggct gtgctcacgc ggcttccctt cgagttcacg
      121 gtgcgctgac ctggtcggca gtcctgacga cagcctccca tcccatggac tcttcggccc
      181 gaggggtcag ccacagcagg tactcggcgt ttccctcact gccgtcgatc gggctggcgg
      241 ccagcgcgcg cgggtgcaga ccggcgtcca gcgccacccg cgccacctcg gtgatggccc
      301 acgcgcggtc cccctgcgcg cggacgatgc cgccctttcc caggcgagtg cggcccacct
      361 cgaactgggg cttgacgagc acgacgacgt cgccgtcgtc gcgcaccaag ccacgaagcg
      421 tctcgagcac caacgtcagc gagatgaagc tcagatcggc aaccaccagg tcgaacgggc
      481 cgcccagggt gtcgggcaga accccacgga tagtggtccg ggaacggtcc tcgacccgcg
      541 ggtcgtccgc gagggttggc accagctgcc cgtggccgac gtcgagggcg acgacctgcg
      601 cagcaccgtg atgcagcagg acctgggtga acccgccggt cgaagccccc acgtccagac
      661 agcgtcgccc cgagacggtc aagccctgcg gtccgaacac ctcgaaggca cccaacagct
      721 tgtatgccgc acggctcacc caccggggtc ccgcctcgcg aacctcgatg gtgtcccgat
      781 cagctacggg ggtcgaggcc ttcgtcgcca gcgacccgca gacgctgacg tcgccggcat
      841 cgaccaggga gcgagcgtgc ccgcgagatc gcgccaagcc gcggcgcacc agctcgacgt
      901 cgagccgagt cgtctcgctc acgcgccgcc gaggtccgaa agtcgggcct ggagggtctg
      961 gtggacccgg ccggcggcct cgagctgtgc gtcgaggtcg tcggccgggg cgttctgcag
     1021 gtcctgcagg gccgcatcga cgacgaggtc gcccgtcgcg tggtcgccga ggtcagtcga
     1081 ggacggcggg gtgcggtccg tttccgggtg tgcatccggc ggagaatgct gctcggaatg
     1141 ctggggagaa tgctgctcgg aatgctcggt cactgagttg cctttgtggt cgtggacttt
     1201 cgcgccgccg ctgtcgtctt cttgactggt gccttcttcg ctgcggtctt cttcactgcc
     1261 gtcttcttcg ctgccgtctt cttcgccggc gccgccttgg ctgccgtctt cttcactgcc
     1321 gtcttgttcg gggtggcaga ggcgcgctga gccgtggctg ttgtcgccgc cctcgacacc
     1381 ggccgcttcg ctggcgtcct acgtgcggtc ggcctcctgc gtgcggccgg cgccggcgca
     1441 ctgggcgcag cggcgctcga cggggagctc gacgggtcca ggagtcccgg atgaccatca
     1501 cccctgaccg ccgtggacac cgctgccgag cgagggatcg cccggcctgg aacccgggca
     1561 gcgctggata ccgcggcagc cccgctggtc gccagggcgg tgcgcagctc ggcaacctcc
     1621 ttacccaaca accccagcgc cctacgagcg gcatccaggt ccgcgacccg cgccacctcc
     1681 gcccgcttga gggcggtttc gacctctgcc tgcaccagac tcaccaggct cgcccggttg
     1741 gcccgggccg cctcgagaag ctggtcggcc aaagtggata cctgaacggc gcgccggctc
     1801 acctcgtcgg ctccgggcag tgccagcaac ccctgcgcgg catccatggc gcgcgccttg
     1861 gtcatctcgc ccaggccact cgccagctgc acatagctcc gcacggattc aaaggccatc
     1921 ggtcctcctc gg
//
LOCUS       DASYFY010000061         2489 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1318371, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000061 DASYFY010000000
VERSION     DASYFY010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1318371"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VGN19_01090"
     CDS             <1..470
                     /locus_tag="VGN19_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194509.1"
                     /translation="GQQSSPRIGGPRTRSTSALPAYPEVDRVPLHSCTPVRAMIGVGD
                     TTTAALHAALSGLAERSRVTADNIANINTPSFLAGRTDFESALKDSLSSGSTPQVSGG
                     SVGRSMDPTNTNGNNVNLDSETVIATETGLRYQLALNALDGKYSLLRTSMSSS"
     gene            470..874
                     /locus_tag="VGN19_01095"
     CDS             470..874
                     /locus_tag="VGN19_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HEV7194510.1"
                     /translation="MSMFGSLGIAASGLLAHRQWLDAVSDNIANINTATSTNQSAFRA
                     RYVEAQAVDYGSGEGGVAVTSAQFGSSTGRVVYEPNNPLADKTGYVRYPDIDLGDQMA
                     QLIMAQRGYQANLQTIDRATKSYQAALQLGKG"
     gene            877..1212
                     /gene="fliE"
                     /locus_tag="VGN19_01100"
     CDS             877..1212
                     /gene="fliE"
                     /locus_tag="VGN19_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015772294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEV7194511.1"
                     /translation="MTSPIGSIVSYSGLPATGLGTDMSVGTTTDTTATQGAGGTSFAN
                     MLASSMDNLQGTQSKADNLAVQAATGDLKDVHDYMIASNEASLATQMTVTLKNKAVDA
                     FNQIMGMPV"
     gene            1212..>2489
                     /gene="fliF"
                     /locus_tag="VGN19_01105"
     CDS             1212..>2489
                     /gene="fliF"
                     /locus_tag="VGN19_01105"
                     /inference="COORDINATES: protein motif:HMM:TIGR00206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HEV7194512.1"
                     /translation="MQSILAGVMERARAILSTISLGQKVVIGLLLAGLLLGGFYFFSW
                     VTTPAQAPLFSNLASKDASAIVNELSAEGVPYTLTDGGQTIMVANDKVYALRLTMSGK
                     GLPAGQDTGYALLDQQGITTSQFQQNVTYQRAIEGELQKTLEALQGVRTAVVHLALPK
                     DQVFVTDQAKPTASVLLDLTTGTQLTGEQIQAVTNLVSSAVQGMDPGGVTVADSTGQV
                     LSSPGGGLSPAAGDARSAVEKSTETRLSANAQQMLDRIVGPNHAAVSVRAAVDLSQKQ
                     STADTYSYTPGTPPLSSSGTTEKYNGNGTPVGGVLGPSSAPIVPSSGSGSNYTKSDAT
                     DNNAVDKTTTTTVTPPGGIQRLTVSVVLDSAVAGKLNQSQIQSLVGNAVGIDPTRGDA
                     ITVATMPFDNSAAKQAAADLASARAADASAQMWS"
BASE COUNT          454 a          925 c          771 g          339 t
ORIGIN      
        1 acggacagca gtcttcgcca cggatcggcg gacctcgcac tcgttccacg agtgctctcc
       61 ccgcatatcc ggaggtcgat cgtgtccctc tgcactcctg cacgccggtg cgcgccatga
      121 tcggcgtcgg tgacaccacc acggcggcac tgcacgccgc actcagtggc ctggccgagc
      181 gttcgcgggt caccgcggac aacatcgcca acatcaacac gccgagcttc ctggccggcc
      241 gcaccgactt cgagtcggcc ctgaaggact ccctgagctc cggcagcacg ccgcaggtgt
      301 ccggcgggtc cgtcgggcgt tcgatggacc cgacgaacac caacggcaac aacgtgaacc
      361 tcgacagcga gaccgtcatc gccaccgaga ccggcctgcg ttaccagctc gcgctcaacg
      421 cgctcgacgg caagtacagc ctcctgcgca cgtcgatgtc gtcgtcctga tgagcatgtt
      481 cgggagtctc gggatcgccg cgtcaggtct gctggcgcac cgccagtggc tggacgccgt
      541 ctcggacaac atcgccaaca tcaacacggc cacctcgacg aatcagagcg ccttccgggc
      601 gcggtacgtc gaagcgcagg ccgtcgacta cggcagcggt gagggcggcg tcgccgtcac
      661 ctcggcccag ttcggcagca gtacgggccg ggtcgtctac gagcccaaca acccgctcgc
      721 cgacaagacc ggatacgtgc gctaccccga catcgacctc ggcgaccaga tggcccagct
      781 gatcatggcg cagcgcggct accaggcgaa cctgcagacc atcgaccggg ccaccaagag
      841 ctaccaagct gccctgcagc tcggaaaggg ctgaccatga cctcccccat cggcagcatc
      901 gtctcgtact cgggactgcc tgccaccggt ctcggcaccg acatgagcgt cggcaccacg
      961 accgacacga ccgcgaccca gggcgccggc ggcaccagct tcgccaacat gctggcgtcg
     1021 tccatggaca acctccaggg gacgcagtcg aaggccgaca acctggccgt gcaggccgcc
     1081 accggcgacc tgaaggacgt gcacgactac atgatcgcca gcaacgaggc atcgctggca
     1141 acccagatga ccgtgaccct caagaacaag gccgttgacg cgttcaacca gatcatgggg
     1201 atgccggtct gatgcagtcg atcctcgccg gggtgatgga gcgcgctcgc gccatcctct
     1261 ccacgatcag cctggggcag aaggttgtca tcggcctgct gctggccggg ctgcttctcg
     1321 gcggtttcta cttcttcagc tgggtcacca ccccggccca ggcaccgctg ttctcgaacc
     1381 tggcgtccaa ggacgcttcg gcgatcgtca acgagctctc cgccgagggc gtcccgtaca
     1441 cgctcaccga cggcggccag acgatcatgg tggccaacga caaggtgtac gccctgcgtc
     1501 tcaccatgag cggcaagggt ctcccggccg gtcaggacac cggatacgca ctgctcgatc
     1561 agcagggcat cacgaccagc cagttccagc agaatgtgac ctaccagcgg gccatcgagg
     1621 gcgagctgca gaagacgctg gaggcgctcc agggcgtccg cacggccgtg gtgcacctcg
     1681 cgctgcccaa ggaccaggtc ttcgtgaccg atcaggccaa gccgacggcc tcggtgctcc
     1741 tcgacctcac gacgggcacg cagctcaccg gcgagcagat ccaggcggtc accaacctgg
     1801 tctcctccgc cgtccagggc atggacccgg gcggcgtcac cgtggccgac tccaccggtc
     1861 aggtgctgtc ctcccccggc ggcggtctca gcccggccgc cggcgacgcc cgctcggccg
     1921 tcgagaagtc gaccgagacc cggctcagcg cgaacgcgca gcagatgctg gaccgcatcg
     1981 tcggccccaa ccacgccgcc gtgtccgtgc gggccgcggt cgacctctcg cagaagcagt
     2041 cgaccgcgga cacctacagc tacacgccgg gcactccccc cctgtcctcc agcggcacga
     2101 cggagaagta caacggcaac gggacgccgg tgggcggcgt gctcggcccg tccagcgcgc
     2161 ccatcgtccc ctccagcggc agcgggtcga actacaccaa gagcgatgcc accgacaaca
     2221 acgccgtgga caagacgacg acgaccaccg tcacaccccc cgggggcatc cagcggctga
     2281 ccgtgtcggt cgtgctggac agcgccgtcg ccggcaagct gaaccagagc cagatccaga
     2341 gcctggtggg caacgcggtc ggcatcgacc ccacccgcgg tgacgcgatc accgtggcga
     2401 ccatgccgtt cgacaactcc gctgccaagc aggcggccgc cgatctggcc agtgcccgtg
     2461 cggccgacgc gagcgcccag atgtggtcg
//
LOCUS       DASYFY010000062         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1633279, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000062 DASYFY010000000
VERSION     DASYFY010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1633279"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2162)
                     /locus_tag="VGN19_01110"
     CDS             complement(<1..2162)
                     /locus_tag="VGN19_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7194513.1"
                     /translation="MELKPTTKVGEALALAQREAQASGNPEITPAHLVLALAEQPDTT
                     TPALLVAGGTTAEAVARAARHTLGSLPRTSGTSVQTPGFGQQTLQVLQHAQTLMQAMG
                     DTFLSTDVLLLALIEKGALRDVGAIDAKAVEAQIPQLRGGHKVTTDNPEATSEALEKY
                     GTDLTQMARDGRLDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQR
                     MVDGDVPESLRGKRLISLDLGAMVAGAKYRGEFEERLKAVLAEIKDSNGQIVTFIDEL
                     HTVVGAGATGEGAMDAGNMLKPLLARGELRLVGATTLDEYRQHIEKDAALERRFQQVF
                     VGEPSVEDTIAILRGLKERYEAHHKVEIEDSALVAAATLSHRYISGRQLPDKAIDLVD
                     EAASRLRMEIDSSPVEIDELRRAVDRLRMEELHLARETDDASAERLERLRQDLADKSE
                     QLAALNARWESEKSGLNRVGELKARLDDLRTQADRLQREGDYEQASRLLYGEIPELDK
                     QLAAADADERAAGRNTELMVKERVGADDIAEVISAWTGIPAGRLLQGETEKLLSMESI
                     IGARLVGQERAVQAVSDAVRRSRAGLSDPHRPTGSFLFLGPTGVGKTELAKSLADFLF
                     DDERAMVRIDMSEYAERHSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEK
                     AHPETFDILLQVLDDGRLTDGQGRTVDFRNVILVMTSNL"
     gene            complement(2267..2539)
                     /locus_tag="VGN19_01115"
     CDS             complement(2267..2539)
                     /locus_tag="VGN19_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HEV7194514.1"
                     /translation="MSEHLLVFPSKDTAEHVAADLADEGFSEIRVIREALAGEDDSED
                     HEWGVYVREDMVADESGAVEGGLRERFEALVKEHGGWYDPEPRPRD"
BASE COUNT          359 a          906 c          907 g          448 t
ORIGIN      
        1 aggttgctgg tcatgacgag gatgacgttg cggaagtcca cggtccggcc ctgcccatcc
       61 gtcagccggc cgtcgtcgag cacctgcagc aggatgtcga aggtctctgg gtgggccttc
      121 tcgacttcgt cgaacagcac cacggagtac ggccgacgac gcacggcctc ggtgagctgg
      181 ccgccctcct cgtacccgac gtagccggga ggggcaccga tgagccgggc cacggaatgc
      241 cgctcggcgt actcactcat gtcgatgcgg accatggccc gctcgtcgtc gaagaggaag
      301 tcggccaggg acttcgccag ctcggtcttg cccacgccgg tggggccgag gaacaggaac
      361 gagccggtgg gccggtgcgg gtcggacagg cccgcccgcg atcgacggac cgcgtcgctg
      421 acggcctgga ccgcccgctc ctggccgacg agtcgggcgc cgatgatcga ctccatgctg
      481 agcagcttct cggtctcgcc ctgcaacagc cgaccggcgg gaatccccgt ccaggcgctg
      541 atgacctcgg cgatgtcgtc ggcgccgacg cgttccttga ccatgagctc ggtgttcctc
      601 ccggccgcgc gctcgtcggc atcggcggcg gcgagctgct tgtccagctc gggaatctcg
      661 ccgtagagca gccgtgaggc ctgctcgtag tcgccctcgc gctgcaaccg gtcggcctgg
      721 gtacgcaggt cgtcgagccg agccttgagc tcgcccacgc ggttaagacc cgacttctcg
      781 gactcccagc gcgcattcag ggccgccagc tgctcggact tgtccgcgag gtcctgacgc
      841 agccgctcca gccgctcggc cgaggcgtcg tcggtctccc gcgccaggtg gagctcctcc
      901 atcctgaggc ggtcgaccgc ccgccggagc tcgtcgatct cgaccgggct ggagtcgatc
      961 tccatccgga gcctcgaggc ggcctcatcg acaaggtcga tcgccttgtc cggcagctgg
     1021 cgcccactga tgtagcggtg ggacagggtc gcggccgcga ccagcgccga gtcctcgatc
     1081 tcgaccttgt ggtgggcctc gtagcgctct ttgagaccgc gcaggatggc gatggtgtcc
     1141 tccaccgagg gctcaccgac gaagacctgc tggaaccggc gctcgagggc ggcgtccttc
     1201 tcgatgtgct ggcgatactc gtcgagggtc gtggccccca ctagtcggag ctcgccacga
     1261 gcgagcagcg gcttgagcat gttgccggca tccatggcgc cctcaccggt ggcacctgcc
     1321 ccgacgacgg tgtggagctc gtcgatgaac gtgacgatct gtccgttgct gtccttgatc
     1381 tccgccagga cggccttgag ccgctcctcg aactcaccgc ggtacttggc accggccacc
     1441 atcgccccga ggtcgaggct gatcagacgc ttgccgcgca gcgactccgg cacgtcgccg
     1501 tcgaccatgc gctgggcgag gccctcgacc acggcggtct tgcccacgcc gggctcgccg
     1561 atcaggacgg ggttgttctt ggtgcgacgg gacaggacct gcacgacccg gcggatctcg
     1621 gcgtcgcgcc cgatgaccgg gtcgagccgg ccgtcgcggg ccatctgggt gaggtccgtg
     1681 ccgtacttct ccagcgcctc cgaggtggcc tccgggttgt cggtggtgac cttgtggccg
     1741 ccgcggagct gggggatctg cgcctcgaca gctttggcgt cgatcgctcc gacatcccgc
     1801 agggcgccct tctctatgag cgcgaggagc aggacgtcag tggacaggaa ggtgtcgccc
     1861 atggcctgca tcagggtctg cgcgtgttgc agcacctgga gggtctgctg accgaagccc
     1921 ggggtctgga cggaggtgcc cgacgtgcgg ggcaacgagc cgagggtatg ccgcgcggcc
     1981 cgcgcgacgg cctcggcggt ggtcccaccc gcgacaagca aggccggagt cgtggtgtcg
     2041 ggctgttcgg cgagcgccag cacgaggtgg gccggggtga tctcggggtt gccgctggcc
     2101 tgcgcctcac gctgcgcgag ggccagcgcc tcccccacct tggtggtggg tttgagctcc
     2161 atgcgggacg gtctcctgtg gtggtgttgg tggtgtgggt ctccttcagg ccaacccgca
     2221 ccaagttgag tgtattccgc tcaactttgt gtcaccaccc cccccgtcag tctcgagggc
     2281 gtggctccgg gtcgtaccag ccgccgtgct ccttgaccag ggcctcgaag cgctcccgca
     2341 ggccaccctc gacggcgccg ctctcgtccg cgaccatgtc ctcgcgcacg tacacgcccc
     2401 attcgtggtc ctcggagtca tcctcacccg ccagggcctc gcggatcacc cggatctcac
     2461 tgaagccctc gtccgcgaga tcggccgcaa cgtgctcggc ggtgtctttg gaggggaaga
     2521 ccagcaggtg ctcactcatg gacgcgagta tgccgcgtgc ccgagccgag cggcatgccc
     2581 ccggtaggtt gcgacgcggg tcgaggccac actgagagca
//
LOCUS       DASYFY010000063         5605 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_319260, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000063 DASYFY010000000
VERSION     DASYFY010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5605
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319260"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..673)
                     /locus_tag="VGN19_01120"
     CDS             complement(<1..673)
                     /locus_tag="VGN19_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEV7194515.1"
                     /translation="MVTAGPTLAEVSETTLLARIFPFFPGGATVPVGPGDDAAVLATG
                     SATVATTDSMVRDRDWLDTWSSAADVATKLLAQNLADVAAMGATPTAVLVSLVADPRT
                     PVAWAVDFARALGEGATAAGVVVAGGDLSSAPAGVLMVSLTALGDLAGQPPVLRSGAR
                     PGDLVAICGTLGRSAAGLALLEAGADAAERGPGLRGLCLEHHLRPTAPLAAGRQAVTR
                     GATSMI"
     gene            826..1059
                     /locus_tag="VGN19_01125"
     CDS             826..1059
                     /locus_tag="VGN19_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006602873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEV7194516.1"
                     /translation="MVQAYILIQTEVGKAASVAEAIAGIPGVVMAEDVTGPYDVIARV
                     EAQTVDELGKLVIAKIQDVPGITRTLTCTVVHV"
     gene            1091..1564
                     /locus_tag="VGN19_01130"
     CDS             1091..1564
                     /locus_tag="VGN19_01130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3515 family protein"
                     /protein_id="HEV7194517.1"
                     /translation="MNTGRLAGRSRRTTATGLLLVVAGGVLSGCSSAVQVSAVPAHAA
                     ACTRADAWWPQRVAKADRRSVTPVNPDAAAWGDPAVIATCGWQELGPTTDPCIQVDGV
                     DWVAHQLEDGVQFRTFGRSPVIEVLVPKAYAPEPLLLPAFGAAARALPSTGRHCT"
     gene            complement(1742..2890)
                     /locus_tag="VGN19_01135"
     CDS             complement(1742..2890)
                     /locus_tag="VGN19_01135"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015937431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase family protein"
                     /protein_id="HEV7194518.1"
                     /translation="MRSRAMSTDQPAPRKPRVAIVFGGRSSEHAVSCATAAGVMQAID
                     REAYDVVPIGISRDGHWVLTDGDPRQLELTASHTPEVMAAGTGVVVPLATTDRSLTVL
                     EPEEVPRSLGDVDVVFPLLHGPFGEDGTIQGMLELADIRYVGSGVFASAAGMDKHYMK
                     VVFASAGIPVGPYTVVTDAQWQRDKAAAMDAVAALTYPVFVKPARAGSSMGISKVSSP
                     EALEGAIELARLHDRKVIVEQGIVGREIECAVLQGLGTDGPRTSEVGEVIVKAGGAHE
                     FYDFEAKYLEDQGVELSCPAQVPDRVSTEVRRLAAAAFEALGCEGLARVDCFYTEAGD
                     VVVNEINTMPGFTPHSMYPQMWAATGVPYAALIDELIQLALTRPVGLR"
     gene            2949..4022
                     /locus_tag="VGN19_01140"
     CDS             2949..4022
                     /locus_tag="VGN19_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEV7194519.1"
                     /translation="MSHDYLSPASRVVALGRQERMPGAGVNAPLEFTSTYVADGPVNY
                     ARAGNPTWSAFEQALGSLEGGDALVFASGMAAVAAALSLAKHAAVVVAPRSAYNGTVA
                     TLLDAERDGRFEVRWVELSDTAATIAALDGADLVWLESPSNPLLELADLGALAAAARA
                     HGAISFCDNTFATPLGQQPLALGVDVVVHSVTKFLSGHSDLILGATVTAPTDAGRKLG
                     EQLAHHRLLGGAIAGPMETWLALRGLRTLHVRLERASANAAELAARLGSHPGVERVRY
                     PGFGAIVSIEVPGGADGAERVAAATRLWTHATSLGGVESQIERRRRHPAEPVAVPEQL
                     LRLSVGIEDVEDLWVDLDQALRV"
     gene            complement(4046..5044)
                     /locus_tag="VGN19_01145"
     CDS             complement(4046..5044)
                     /locus_tag="VGN19_01145"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEV7194520.1"
                     /translation="MTTAAVFGTGSWGTAYAAVLADGGTTVRMWGRRSEVVDQINAGT
                     NEDYLPGLKLPDAISATNDPAEAARGADIIVLALPSQTLRANLGDWGSVLPRHAAVVS
                     LMKGVELGTTKRMSEVIAEVAGVQQQRIVIVSGPNLAKEIAAKQPAASVVACIDEDVA
                     EMVAAASNPPYFRPYTNTDVVGTELCGAVKNVIALAVGMAEGLGMGDNSKASIITRGL
                     AETTRLGMALGADPMTFAGLAGVGDLIATCMSPLSRNRTFGLNLGKGMTVEEVVAVTR
                     QTAEGVKSCESILQLAEKHNVRVPIIEQVAAVVHDGRAPAEVVGALMLRRLKNETD"
     gene            complement(5041..>5605)
                     /locus_tag="VGN19_01150"
     CDS             complement(5041..>5605)
                     /locus_tag="VGN19_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEV7194521.1"
                     /translation="KEGVFRVPVLGALLRSAEQIPVYRNTGKAADAFRAAVVAVQGGK
                     CVAVYPEGTLTRDPDLWPMVGKTGAARIALTTRCPVIPVAQWGPQQLLAPYGRRLKLL
                     PRATMHVRAGRPVDLSDLYDVPMTGAVLRQATDRIIGALTAELAGIRGEEPPAERFDS
                     RKHGLPTTGNFRKAKNRLNRPEGEGQA"
BASE COUNT          828 a         2026 c         1906 g          845 t
ORIGIN      
        1 cgatcatcga ggtcgcgcca cgtgtcaccg cctgccgacc tgcagccagc ggggccgtcg
       61 gccgaaggtg atgctccagg cacaggccgc gtaagccggg accacgttca gctgcgtcgg
      121 ctcccgcctc gagcagcgca agtcccgccg ccgagcggcc cagtgtcccg cagatggcga
      181 cgaggtcacc cggacgggct ccgctgcgca ggaccggtgg ctgaccagcc aggtcgccca
      241 gcgcggtgag ggagaccatg agcacgccgg ccggtgccga ggataggtca ccgcccgcga
      301 cgacaacgcc ggccgcggtg gccccttcac ccaatgccct cgcaaagtcc accgcccagg
      361 cgaccggcgt ccgggggtct gccaccagcg agaccagcac tgccgtcggc gtggctccca
      421 tggccgcgac gtccgcgagg ttctgcgcca gcagcttggt cgcgacatcg gccgccgagg
      481 accaggtgtc gagccagtcc ctgtcgcgca ccatcgagtc ggtcgtcgcc acggtcgcac
      541 tgcccgtggc gagcacggcg gcatcgtccc ccggacccac gggcaccgtg gcgccacctg
      601 ggaagaaggg aaagatcctg gccagcagcg tcgtctccga cacctccgcc agggtgggcc
      661 cggctgtaac catgacttga cctcctagtg acccactagt gacccgtcgg ggagacgggc
      721 gggacaccgg cacggtagcg tctggcgtgg tcgcggtgcc caccgcgacc gggttctcgc
      781 ggaacgcacg ttccggccaa ccagaagaga atgaggtgcc tcgtggtggt gcaggcctac
      841 atcctgatcc agaccgaagt cggcaaggcg gcctccgtcg ccgaggccat agccgggatc
      901 cctggcgtgg tcatggccga ggacgtcact ggtccttacg acgtgatcgc ccgcgtggag
      961 gcccaaaccg tcgacgagct gggcaagctc gtgatcgcaa agatccagga cgtcccgggg
     1021 atcacgcgca ctctcacctg caccgtcgtc cacgtctgac cgttcgccgc gtgcgcgtcg
     1081 cgacaccccg gtgaacaccg gtcgcctcgc tgggcgctca cgccgcacca ctgccaccgg
     1141 cctccttctt gtggtggccg gtggcgtgct gtccgggtgc tcctcagcgg tgcaggtcag
     1201 cgccgtcccg gcccatgccg cggcgtgcac ccgcgccgac gcttggtggc cgcagagggt
     1261 cgccaaggcg gatcggcgct cggtcacccc ggtgaacccg gacgccgcag cctggggaga
     1321 cccggcagtg atcgcgacct gcgggtggca agagctgggg ccgaccaccg acccgtgcat
     1381 ccaggtcgac ggggtcgact gggtggcgca tcagctggag gacggagtgc agttccgcac
     1441 cttcggtcgc tcgccggtca tcgaggtact ggtccccaag gcgtatgcac ccgagcccct
     1501 gctccttccg gccttcggcg ccgccgccag ggcgctgccc tccaccggcc ggcactgcac
     1561 ctgaccgtcc gggtctgccc gctcgcttcc cccgctcccc tgcagcaacc tctgcttgcg
     1621 gaggttcgtg cggcggggac atggtgcaac ctgtgctgac tgcagcaacc tctgctagca
     1681 gaggttcgtg cctgcgccag gggcaaggca agcaggggta tgccgcggac ggaccgtgcg
     1741 gtcagcgcaa gccgacggga cgagtgaggg cgagctggat cagctcgtcg atgagcgcgg
     1801 catacggcac acccgtcgcg gcccacatct gcgggtacat cgagtggggc gtgaaccccg
     1861 gcatcgtgtt gatctcgttg accaccacgt cgcccgcttc ggtgtagaag cagtcgaccc
     1921 gcgccagccc ctcgcatccc aacgcctcga aggccgcggc cgcaagtcgc ctcacctcgg
     1981 tcgacacgcg gtcgggaacc tgcgccggac agctcagctc gacgccctgg tcctcgagat
     2041 acttggcctc gaagtcgtag aactcgtgcg cacccccggc cttgacgatg acctccccga
     2101 cctcggacgt ccgcggtccg tcggtgccaa gaccctgcaa caccgcgcac tcgatctctc
     2161 gacccacgat gccctgctcg acgatgacct tgcggtcgtg caggcgcgcg agctcgatgg
     2221 ccccctcgag tgcctctggc gaggagacct tggagatccc catgctcgac ccggcccggg
     2281 ctggtttgac gaagacggga taggtcaggg cagccacggc gtccatcgcc gccgccttgt
     2341 cccgttgcca ctgggcgtcg gtgaccaccg tgtaggggcc caccggaatg cccgcgctgg
     2401 cgaacacgac cttcatgtag tgcttgtcca tcccagccgc cgaggcgaag acgcccgacc
     2461 cgacataccg gatgtcggcc agctcgagca tgccctggat ggtgccgtcc tcaccgaacg
     2521 gcccatgcag caacgggaag acgacgtcaa cgtcgccgag gctgcgcgga acctcctcgg
     2581 gttcgagcac cgtcagcgag cggtccgtcg tcgccaacgg cacgacgacg ccggtgcctg
     2641 cggccatcac ctcaggggtg tggcttgcgg tgagctcgag ctggcgcggg tcaccatcgg
     2701 tgagcaccca gtggccgtca cgcgagatgc cgatgggcac cacgtcgtag gcctcacggt
     2761 cgatggcctg catgaccccg gcggccgtcg cgcatgacac cgcatgctcg gaggagcggc
     2821 cgccgaagac gatggctaca cgcggtttgc ggggtgcggg ctggtcggta ctcatcgccc
     2881 gagagcgtat cccgcccgcc ccgcggtcac cggccccgac ccgcgacccc gccacatagg
     2941 gtgacggcgt gagccacgac tacctctccc ccgccagccg tgtggtggcc ttgggccgcc
     3001 aagagcgtat gccgggagcc ggcgtcaacg cgcccctcga gttcacctcg acgtacgttg
     3061 ctgacggccc ggtgaactac gcccgcgcgg ggaacccgac gtggtcggcc ttcgagcagg
     3121 cgttgggctc gctcgagggc ggcgacgctc tggtcttcgc ctcgggcatg gctgccgtgg
     3181 ccgcagcgct gtcgctcgcg aagcatgcag cagtggtcgt ggcaccgcga tcggcttaca
     3241 acgggacggt ggccacgctg ctcgacgccg agcgcgacgg tcgattcgaa gtgcgctggg
     3301 tggagctcag cgacactgcc gccaccatcg ccgccctcga cggagccgac ctggtctggc
     3361 tggagtcgcc cagcaacccg ctgctggagc tcgccgacct cggggccctg gctgcggcgg
     3421 cccgcgcgca cggagcgatc tcgttctgcg acaacacctt cgcgacgccg ttgggccaac
     3481 agcccttggc gctcggcgtc gacgtcgtcg tccactcggt gaccaagttc ctcagcgggc
     3541 acagcgatct catcctcggg gcaaccgtca ccgcgcccac cgacgccggc cggaagctgg
     3601 gcgagcagct cgcgcatcac cggctgctgg gcggtgccat cgctggcccg atggagacct
     3661 ggctggcatt gcgtggcctg cgcaccctcc atgtccggct cgagcgagcc agcgccaatg
     3721 ccgctgagct ggccgcccgg ctgggctccc acccgggcgt cgagcgggtg cggtatccgg
     3781 ggtttggcgc gatcgtctcg atcgaggtac cgggcggagc cgacggcgcc gaacgcgtgg
     3841 ctgcggcgac ccgcctgtgg acccatgcga cgagcctcgg tggggtggag tcgcagatcg
     3901 agcgccgtcg ccggcacccg gcagagcctg tggcggtccc ggagcagctg ctgcggctct
     3961 cggtgggcat cgaggacgtc gaggacctct gggtcgacct cgaccaggcc ctgcgggtct
     4021 gaccgcctga cgtcggcggc tgctctcagt cggtctcgtt cttcaaccga cgcagcatga
     4081 gcgccccgac gacctcggca ggcgcccgac cgtcgtgcac aacggcggcg acctgctcga
     4141 tgatgggcac ccgaacgttg tgcttctctg ccagctgcag gatcgactcg caggacttga
     4201 ccccctcggc agtctgacgc gtcaccgcga caacctcctc gaccgtcatg cccttgccga
     4261 ggttcagccc gaaggtccgg ttacgcgaca gcggcgacat gcaggtggcg atcaggtcac
     4321 cgacgcccgc cagaccggcg aaggtcatcg ggtcggcgcc cagggccatc ccgagccggg
     4381 tggtctcggc cagaccgcga gtgatgatcg aagccttgga gttgtcaccc atgccgaggc
     4441 cttcggccat ccccaccgcg agcgcgatga cgttcttcac cgcgccacac agctccgtcc
     4501 cgaccacatc ggtgttcgtg tagggccgga agtagggcgg gttcgacgcc gcggcgacca
     4561 tctcggcgac gtcctcgtcg atgcacgcga cgacgctggc ggcgggctgc ttcgctgcga
     4621 tctccttggc caggttgggc cccgagacga tcacgatgcg ctgctgctgg accccggcca
     4681 cctcggcgat gacctcgctc atccgcttgg tggtaccgag ctcgaccccc ttcatcaggg
     4741 agacgaccgc agcgtgtcga ggcaggacag aaccccagtc gccgaggttc gcgcgaaggg
     4801 tctgggacgg cagcgcgagc acgatgatgt ccgcaccccg agccgcctcg gccgggtcgt
     4861 tcgtcgccga gatggcatca ggcagcttga gcccgggcag gtagtcctcg ttggtgccgg
     4921 cgttgatctg gtcgaccacc tcgctgcggc ggccccacat ccgcacagtc gtgccgccgt
     4981 cggccagcac cgcggcatac gcggtccccc agcttccggt gccgaacacg gctgcggtcg
     5041 tcatgcctgg ccctcgccct cgggccggtt gagtctgttc ttggccttcc ggaagttccc
     5101 tgtcgtgggc agaccatgct tgcgggagtc gaaccgctcc gcgggcggct cctcgccgcg
     5161 gatgccggcc agctctgcgg tgagggcccc aatgatgcgg tcggtggcct gccgcagcac
     5221 cgcaccggtc atgggaacgt catagaggtc gctgaggtcg actggacggc cggcgcggac
     5281 atgcatggtc gcgcgcggca ggagcttcag ccgcctcccg tacggcgcca gcagctgctg
     5341 aggtccccat tgcgccaccg ggatgaccgg gcagcgcgtc gtcagggcga tccgggccgc
     5401 tccggtcttg cccaccatgg gccacaggtc cgggtcgcga gtgagcgtgc cctcgggata
     5461 gacggcgacg cacttgccgc cctgcaccgc gaccaccgct gcccgaaagg catccgcggc
     5521 cttgccggtg ttgcggtaca ccgggatctg ctcggcactg cgcaggagcg ctcccaggac
     5581 ggggacgcgg aacacgccct ccttc
//
LOCUS       DASYFY010000064         2328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_4227, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000064 DASYFY010000000
VERSION     DASYFY010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4227"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1770)
                     /locus_tag="VGN19_01155"
     CDS             complement(<1..1770)
                     /locus_tag="VGN19_01155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194522.1"
                     /translation="MGENQLGLRSLALGLTCAVAMLAPAAAQARPATGLGPDGARLTA
                     LGRSFDAASQRLAGQLGKIHPTFRPRVGHAMGLLPRLGTQPIEFASGQNIPVVYHGGQ
                     VMRNVTVHTIFWAPPGYHFDGAPTPGTPGYEALIKQFLVDVAHDSSSPHNVFSTLTQY
                     NDGHGAASTQINYDPASDSVDVNAPYPPASQQCPSPAGVSTCVTDLQLEQEIDKVIGP
                     NGAGARGLSNIWFVFLPPDVDTCILVGECATTAFAGYHSEFDLGHGPTVYVPVPDPLV
                     EFTPPPGSDPQGNPEAELTLDTVAHEAEESITDPYGNAWMDPNGFEVADECENPEYGT
                     PLGYAPDGSPYNQLINGHSYLIQDMWSNAVLGCVQGSSSTQSPLPLHTVSLHQYSPAV
                     SGSLGVARGGVPVDVGLLRGFDLVAEARARTRANGSWGPVKLRSASGALHGVGDDREG
                     VAVAYGRGGSAGADLIATGDGGDPFTESGYTGWFDLDTGFALGSHGVIVGPCSQTGVL
                     SIRVGSSFTQSPSELCSTEADAAEIPTRFIGPGTAVTMSSEDNRAPSPIEAEGALVKM
                     SVSLGEPDSFPAQLNNQVAFLGTG"
     regulatory      1823..1946
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1942..>2328
                     /locus_tag="VGN19_01160"
     CDS             1942..>2328
                     /locus_tag="VGN19_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013118230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194523.1"
                     /translation="MIEAPAQEPRELDGTTGVQVELVSRTFASKRGPVQALSEMSLHA
                     APHEIVAVVGPSGCGKSTLLELICGLQQPDGGTVLSAPAALMPQRDLLLPWLDALENA
                     ALSLRLAGRRRRAAREGAHELFCELGL"
BASE COUNT          345 a          781 c          854 g          348 t
ORIGIN      
        1 cccggtgccg aggaatgcca cctgattgtt gagctgggcg ggaaaactgt cgggctcgcc
       61 gagcgacacg ctcatcttga ccagggcgcc ctcagcctcg atcggcgacg gggctcggtt
      121 gtcctccgag ctcatcgtca ccgccgtccc ggggccgatg aaccgggtgg gaatctcggc
      181 cgcgtcggcc tcggtgctgc acagctccga cggtgactgg gtgaagctcg acccgacccg
      241 gatcgacagc acccccgtct gcgagcacgg cccgacgatg acgccgtggc tgcccagggc
      301 aaacccggtg tcgaggtcaa accagccggt gtagcccgac tcggtgaacg gatcgccgcc
      361 gtcgcccgtg gcgatcaggt cggccccggc gctgccgccg cgtccatagg ccaccgccac
      421 gccctcgcga tcgtcgccga ccccgtgcag agcgccggag gccgagcgca gcttgaccgg
      481 cccccagctg ccgttggcgc gcgtccgcgc ccgggcctcg gccaccaggt cgaaccctcg
      541 cagcagtccg acgtccaccg ggacgccgcc tcgggccacg ccaagactgc cgctgaccgc
      601 cgggctgtac tggtggaggg acacggtgtg cagcggcagc gggctctggg tcgagctcga
      661 gccctgaacg cagcccagga cggcattgga ccacatgtcc tggatcaggt acgagtggcc
      721 gttgatcagc tggttgtagg gcgagccgtc gggcgcgtag cccagggggg tgccgtactc
      781 gggattctcg cactcgtcgg ccacctcgaa cccgttgggg tccatccaag cgttgccgta
      841 cgggtcggtg atcgactcct cggcctcatg cgccacggtg tcgagcgtca gctccgcctc
      901 cgggttgccc tggggatcgg agccgggcgg gggcgtgaat tcgaccagcg ggtcggggac
      961 gggaacgtag acggtcggcc cgtggccgag gtcgaactcc gagtggtagc cggcgaaggc
     1021 cgtggtggcg cactcgccga cgaggatgca ggtgtccacg tccgggggca ggaacacaaa
     1081 ccagatgttg gacaggccgc gcgccccggc gccgttggga ccgatcacct tgtcgatctc
     1141 ctgctcgagc tgcaggtcgg tgacgcaggt gctgaccccg gccggtgacg ggcactgctg
     1201 gctggccggt ggatatggag cgttgacgtc gaccgagtca gacgccgggt cgtagttgat
     1261 ctgcgtgctg gccgccccgt ggccgtcgtt gtactgggtc agggtcgaga acacgttgtg
     1321 cgggctggag gaatcgtgtg ccacgtcgac caggaactgc ttgatcagcg cctcgtagcc
     1381 cggcgtgccg ggcgtgggcg cgccgtcgaa gtggtagccg ggcggggccc agaagatcgt
     1441 gtgcacggtc acgttgcgca tcacctggcc gccgtggtaa acgaccggga tgttctggcc
     1501 ggaggcaaac tcgatcggct gggtgcccag ccgcggcagt aggcccatcg cgtgcccgac
     1561 ccggggacgg aaggtgggat ggatctttcc cagctgccct gccaggcgct gcgaggccgc
     1621 gtcaaacgaa cggcccagcg cggtcagccg cgcgccgtcg gggcccagac cggtggccgg
     1681 tcgggcctgg gcggcggcgg gcgccagcat ggcgacggca cacgtcagcc caagcgccag
     1741 cgacctcaag cccagctggt tctcccccat tgacccagac gttatcgcag ccgggcgcag
     1801 gcgatagcat ctcgcccagc atctgaaaac ccaggggggc tggcgggata gccggctgag
     1861 atagcgcccc tcaccagtcg tgacctggcg ctgacccttt gaacctgtgg ggtaatgccc
     1921 gcggagggag cgttacgagt gatgatcgag gctccagcgc aggagcctcg cgagcttgat
     1981 ggcacgactg gagtgcaggt cgagctcgtg agccggacct ttgccagcaa gcgcggtccg
     2041 gtgcaggcgc tgtcggagat gtcgctgcac gccgcgccgc acgagatcgt ggctgtggtc
     2101 gggcccagcg gctgcggcaa gagcaccctg ctcgagctga tctgcgggct gcagcagccc
     2161 gacggcggca cggtgctgag cgccccggcg gcgctgatgc cccagcgcga cctgctgctg
     2221 ccgtggctgg acgcgctcga gaacgcggcc ctcagcctgc ggctcgcagg gcggcgacgc
     2281 cgggccgccc gcgaaggtgc ccacgagctg ttctgcgagc tcggtctc
//
LOCUS       DASYFY010000065         4229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1423418, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000065 DASYFY010000000
VERSION     DASYFY010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1423418"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..921
                     /locus_tag="VGN19_01165"
     CDS             <1..921
                     /locus_tag="VGN19_01165"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEV7194524.1"
                     /translation="GGLAMNVEPGLLLASRYRLEEIIATGGMGQVWRATDETLRRSVA
                     VKVLRPGGGDEKEFVERFRAEALNSAALQHPNIVTVHDFGEGEDTAFLVMELIDGEPL
                     SAIIADRGPLPTDEVTEILFQAAIALQAAHDAGVVHRDVKPANIVVDAEGYARLADFG
                     ISRAMAGSGLTQTGEVLGTAHYLSPEQVQGQPAGPASDVYALAVVGYEMLTGNRPFAG
                     DSMVTTALAHVSQPAPELPDSVPEPLRTTVMAGLAKLPEHRPASALAFAEALHLPAGT
                     VPDELVAGAQSAVSPVVAGMPGGLADPGAA"
     gene            1024..1572
                     /locus_tag="VGN19_01170"
     CDS             1024..1572
                     /locus_tag="VGN19_01170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194525.1"
                     /translation="MRKVLGLAIAMVAAFWMVAPAVAATSATIQVSPTSQQAGGSVRV
                     TGTCEANTSGFALSHAFLHDSTHDFAGVGAAPFTTNATGSFAVTAQIPSSIPAGTYTV
                     SARCGGGNIGVTANLVVTPPTQATTSPSHATTPPTQVPAGSGGLAATRTAPSTSELGL
                     IAAGAMLLLLGGAGVARQRARR"
     gene            complement(1569..1925)
                     /locus_tag="VGN19_01175"
     CDS             complement(1569..1925)
                     /locus_tag="VGN19_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194526.1"
                     /translation="MCTGTTSARTPNAGIWTRTGGDGGDEVAVADGEEGPADEACDGD
                     GDGEVDGEATAELLGAAEANGVVLLEIEPKSAPTNRSRSTNVAATTSRLTPTVRRLTH
                     PSVARRANLPVIATRA"
     gene            1918..2301
                     /locus_tag="VGN19_01180"
     CDS             1918..2301
                     /locus_tag="VGN19_01180"
                     /inference="COORDINATES: protein motif:HMM:NF016119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class F sortase"
                     /protein_id="HEV7194527.1"
                     /translation="MHTTNGVLGVPEDPQRLGWWAEGAQVGAGTGTVTIDGHVDSAAA
                     GEGALFQVGSLRGGETILVTTASGQTVRYAVTARHSYLKFRGLPAELFGTAGQPRLVL
                     ITCGGPFDRKAGSYLDNIVVVAIPL"
     gene            2332..2778
                     /locus_tag="VGN19_01185"
     CDS             2332..2778
                     /locus_tag="VGN19_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015881614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II truncated hemoglobin"
                     /protein_id="HEV7194528.1"
                     /translation="MESVYEAAGGEDGLLRLSRAWHERVMADEVVAHAFSHGFHPQHS
                     ERLAAYWTEALGGPAAYSGRYGDETSVVRLHSGHGPHEDMDRRAIACFDQALTDVGLV
                     DGPLRGVLHDYFAWATTTTMARYPRSEDDVPDDLPLPHWSWEGLIS"
     gene            complement(2775..4109)
                     /locus_tag="VGN19_01190"
     CDS             complement(2775..4109)
                     /locus_tag="VGN19_01190"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HEV7194529.1"
                     /translation="MSPQGRVVDSYVPRHGDLSFDALHYDVALEYRVDGNHLAATTVI
                     SAVAVESLDRVELDLHGLAVTKVLVNGARPAKYTHRAGRLGIRLAAQVEAGQAISILV
                     AYQGNPTTIHGPQGEAGWEELHDGVIVAAQPHGAPSWLPCNDRPANKATYRFEVTAPS
                     EYHVTANGSLVGQQRRASRTTWVYDQTQPMATYLATLQIGRYQSRILSSSPAPITVVC
                     SAGVVGRADIALAHQAEMMRTFVRLFGPYPFDGYTVVITDDVLEIPLESQGLATFGSN
                     FATTAWDHQRLVAHELSHQWFGNSLTLRAWRDIWLHEGFACYAEWLWSEESGGLSADQ
                     WARAHWDRLARLPHTIILADPTPEQMFDDIVYKRGALTLHTLRLTLGDAVFFALLRGW
                     VQDNRYGSVTTGMFLAHAQAHAGRPLGTLLDPWLFGLALPALPPEPSRSRRS"
BASE COUNT          646 a         1452 c         1489 g          642 t
ORIGIN      
        1 ggtggcctcg ccatgaacgt cgagccgggg ctgttgctcg cgagtcggta tcgactcgag
       61 gagatcatcg cgacgggggg catgggtcag gtctggcgcg ccacggacga gacccttcgg
      121 cggtcagtgg ccgtcaaggt gttgcgcccg ggcgggggcg acgagaagga gttcgtcgag
      181 cgcttccgcg ccgaagccct caacagtgcc gccctgcagc accccaacat cgtcacggtc
      241 cacgacttcg gcgaaggcga ggacacggcc ttcctcgtca tggagctgat cgacggggaa
      301 ccgctctcgg cgatcatcgc cgaccggggt ccactgccca ccgacgaggt cacggagatc
      361 ctcttccagg cggccatcgc cctgcaggcg gcgcacgatg ccggagtggt acatcgtgac
      421 gtcaagcccg cgaacatcgt ggtagacgcg gaggggtatg cccgcctggc ggacttcggc
      481 atctcccggg cgatggccgg ctccggtctg acccagaccg gtgaggtgct cggcaccgct
      541 cactaccttt cccccgaaca ggtccagggc cagcccgccg gaccggcgag cgacgtgtac
      601 gccctggccg tggtcgggta cgagatgctc accggtaacc ggccctttgc cggcgactcg
      661 atggtcacca ccgcactggc gcacgtcagt cagcccgccc cagagcttcc ggactccgtg
      721 cccgaaccgc tgcgcacgac ggtcatggcc ggccttgcca agctgcccga acatcgcccc
      781 gccagcgcgc tggcgttcgc cgaggccctt cacctgcccg cgggcaccgt gcccgacgag
      841 ctcgtggccg gagcccagtc cgcggtcagc cccgtcgtgg ccggtatgcc gggtgggcta
      901 gcggatcctg gagcagcctg aggtttctct ccgggcacgc ctccctgccg cgggaggaca
      961 tcgagccaac caaggccgtc gctcgcgcgt cgaaggacta tcaccagtcc tgaggaggat
     1021 gcgatgcgca aggttctagg tttggcgatc gccatggtcg ccgcgttctg gatggtggct
     1081 ccagctgtgg ctgcgacgtc cgccacgatc caggtctcac ccaccagcca gcaggccggc
     1141 ggatcggtgc gggtgaccgg gacctgcgag gccaacacgt ccgggttcgc gttgtcgcac
     1201 gcgttcctgc acgactcgac gcatgacttc gccggcgttg gtgcggcgcc cttcaccacc
     1261 aacgccacgg gcagcttcgc agtcaccgcg cagatcccga gcagcattcc tgccggcacg
     1321 tacacggtct ccgcgcgctg cggcggtggc aacatcggcg taaccgccaa cctcgtggtc
     1381 accccgccga cccaggcgac gacatcgccc agccacgcca cgacgccgcc cacccaggtg
     1441 cccgcaggca gcgggggctt ggcggcaacg agaacagcgc cctcgacctc cgagctcggg
     1501 ctcatcgccg caggtgcaat gttgctgctg ctgggcggag cgggcgtcgc gcgtcagcgg
     1561 gccaggcgct aagccctcgt cgcgatgact ggcaggttcg cacggcgcgc aacgctgggg
     1621 tgggtcagcc tcctgaccgt cggcgtgagc ctgcttgtcg tcgcggcgac gttggtgctg
     1681 cgcgatcggt tcgtcggggc ggacttcggc tcgatctcaa gcaggacaac accattcgcc
     1741 tcagcggctc ccagcagctc ggccgtcgcc tcgccgtcga cctcgccgtc gccatcgccg
     1801 tcacaggcct cgtccgcagg gccttcctcc ccgtcggcga cggcgacctc atccccgccg
     1861 tcgccgcccg ttcgtgtcca gatccccgcg ttgggggtgc gggcgctggt cgtgcccgtg
     1921 cacacgacga acggggtcct gggcgtgccc gaggatcccc agcggctggg ctggtgggcc
     1981 gagggggcgc aggtcggggc tggcaccgga accgtcacca tcgacggtca tgtcgactca
     2041 gcagcggcgg gggagggggc cctgttccag gtcggcagcc tgcggggcgg cgagacgatc
     2101 ctggtcacca cggcctccgg tcaaaccgtc aggtatgccg tgaccgcacg tcacagctac
     2161 ctcaagttcc gcggtctacc agcggagctc ttcggcacgg ctgggcagcc gcggctggtc
     2221 ctgatcacgt gcggaggacc cttcgaccgc aaggccggca gctacctcga caacatcgtg
     2281 gttgtcgcca tccccctgta aggcagcggc caaccgctgc atgatgggct catggagagc
     2341 gtctacgagg cggcaggggg tgaggacggg ttactgcgtc tgtcgcgggc ctggcacgag
     2401 cgggtgatgg ccgacgaggt cgtcgcccac gcgttcagcc acggattcca cccgcagcac
     2461 agcgagcggc tggccgcgta ctggaccgag gcgctgggcg gtccggcggc atactcaggc
     2521 cgctatggcg acgagacctc ggtggtgcgc ctgcacagcg gccacgggcc acacgaggac
     2581 atggatcgcc gagccatcgc ctgtttcgac caggcgctga ccgatgtcgg actggtcgac
     2641 ggcccgctgc gcggcgtgct gcacgactac ttcgcgtggg ccaccacgac gacgatggcg
     2701 cggtaccccc ggtcggaaga cgacgttccc gacgacctcc cactgccgca ctggtcctgg
     2761 gaaggcctga tctcttagga ccgacgggag cgcgaaggtt ccgggggtag cgccgggagc
     2821 gccagcccga acagccaggg gtcgagcagc gtgcccagtg gccgcccggc atgagcctgc
     2881 gcgtgcgcca ggaacattcc cgtggtcacc gagccgtacc ggttgtcctg cacccagccg
     2941 cgcaggagcg cgaagaagac ggcgtcgccg agggtcagcc gcaacgtgtg caacgtcagc
     3001 gcgccccgct tgtagacgat gtcatcgaac atctgctcag gggtggggtc ggcgaggatg
     3061 atggtgtgcg gcaggcgggc gagccggtcc cagtgggccc gcgcccactg gtcggcgctc
     3121 agaccgccgg actcctcgga ccacagccac tcggcgtagc aggcgaagcc ttcgtggagc
     3181 cagatgtctc gccacgctcg caacgtcagg ctgttgccga accactggtg ggagagctca
     3241 tgggcgacca ggcgctggtg gtcccaggcg gtcgtcgcga agttggaccc gaacgtggcg
     3301 aggccctgag actccagtgg gatctccaga acgtcgtcgg tgatgacgac ggtgtaaccg
     3361 tcgaagggat aggggccgaa gagccgcacg aaggtccgca tcatctcggc ctgatgcgcg
     3421 agggcgatgt cggctcggcc gaccacgccg gcggagcaga cgaccgtgat gggggcgggc
     3481 gagctggaca ggatgcgcga ctggtaccgg ccgatctgga gggtggccag ataggtcgcc
     3541 atgggctgcg tctggtcgta gacccaggtg gtgcgactcg cccggcgttg ctggccgacc
     3601 aggctgccgt tggccgtcac gtggtactcg gacggggcag tgacctcgaa gcggtaagtg
     3661 gccttgttgg cgggccggtc gttgcacggc aaccaggacg gtgcgccatg cggttgcgcg
     3721 gcgacgatga cgccgtcgtg cagctcctcc cagccggctt cgccctgcgg accgtggatg
     3781 gtggtcgggt tgccctggta cgcgaccagg atcgagatgg cctgacccgc ctcgacctgt
     3841 gcagccagac gtatgccgag ccgcccagcc cgatgggtgt acttggcagg ccgggccccg
     3901 ttgaccagca ccttggtgac cgccaggccg tgcaggtcca gctccacccg atcgagactc
     3961 tcgacggcga cggccgagat gaccgtcgtc gcggcgaggt ggttcccgtc gacgcggtac
     4021 tccagcgcga cgtcgtagtg cagcgcgtcg aacgacaggt caccatggcg cggaacgtag
     4081 ctgtcgacaa cgcggccttg ggggctcacc cgccctcgtc ctcggcccaa gggccgatgg
     4141 ggttcccgat ccaccgggtg cggtccggga cggactcacc tctcatgacc agtgacacgg
     4201 gtccgaccgt agcgtgtctg cccagcaca
//
LOCUS       DASYFY010000066         1575 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_424880, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000066 DASYFY010000000
VERSION     DASYFY010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424880"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VGN19_01195"
     CDS             complement(<1..627)
                     /locus_tag="VGN19_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194530.1"
                     /translation="MRLLHRAIALLDRPDATPQERLLRGRATVTLAYPTFERHGLGRA
                     LAVLDAAEGLVEGPEGAPVRALASVQRAGFLGRSGDWAAAVEILMAAERDTASLTARE
                     RSSVLLNRGLARMYRHDLPGSQHDLDASLTLSSAHGFDDLAFKARHNLGCLEFLRGDL
                     PAALRLMAEADAAVVAVSRATAKLDYARVLLEAGLLDRAAVLLDEALAM"
     gene            complement(720..1223)
                     /locus_tag="VGN19_01200"
     CDS             complement(720..1223)
                     /locus_tag="VGN19_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194531.1"
                     /translation="MSPDQADPSRDTELLDGEDLTILGEVLEMFDRLDPVPASLGDRV
                     KFALTVQALEGEVAQLQRLSAEGAGVRSVDYARAQTVTFTSDSLTAMVTISALDAETV
                     RVDGWVTGGRVEVELRERSRSSFLETDADGRFVFERIARGLAQFVLRPLDSGIQARPV
                     ITPTIEL"
     gene            complement(1220..>1575)
                     /locus_tag="VGN19_01205"
     CDS             complement(1220..>1575)
                     /locus_tag="VGN19_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020016100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7194532.1"
                     /translation="MQWLLITTKRESWRVGRQAQRSPSAPDLGMDLQDRDPGPEGVAV
                     LSERQRVLWGHLQTLPHKCRELLRVVAFADRPDYAQVSTALGMPVGSIGPTRGRCLAK
                     LRSLLQGDPTWGGEQ"
BASE COUNT          227 a          565 c          564 g          219 t
ORIGIN      
        1 catcgcgagc gcctcgtcga gcagcacggc cgcccggtcg agcagccctg cctcgagcag
       61 aacccgcgcg tagtcgagct tcgccgtggc tctggacaca gcgaccacag ccgcgtccgc
      121 ctcggccatg agccgcagcg cggcgggcag gtcaccacgc aggaactcca ggcagcccag
      181 gttgtgccgc gccttgaagg ccagatcgtc gaagccgtgc gccgacgaga gcgtcaggga
      241 cgcgtccagg tcgtgctgtg acccgggcag gtcgtggcgg tacatccggg ccaggccccg
      301 gttgagcagg accgaggatc gttcgcgggc ggtgagcgac gcggtgtcgc gctcggccgc
      361 catgaggatc tccaccgcgg cggcccagtc tccgctgcga cccaggaagc ccgctcgctg
      421 caccgaagcc agggcacgga ccggagcccc ctcggggcct tcgacgagac cttcggccgc
      481 gtcgagaacc gccagcgcac ggcccagccc atgccgttcg aaggtcgggt aggccagggt
      541 cacggtcgcg cgcccgcgca gcagccgctc ctgcggtgtg gcgtcggggc ggtcgagcag
      601 cgcgatggca cggtgcagca gccgcatcgc gtcggcggga cgcccggccg agttggcgcg
      661 ggctccccgt tgcgcgaggg cggctgcggt ggccagtcgg cgatcctcga tcggctacct
      721 cacagctcga tggtgggggt gatcacgggg cgggcttgga tcccgctgtc gagcgggcgc
      781 aggacgaact gcgccaaccc ccgggcgatc cgctcgaaca cgaaccggcc atcggcgtcg
      841 gtctccagga acgaggagcg cgaccgttcc cggagctcga cctccacgcg accgccggtg
      901 acccatccgt cgacgcgcac ggtctctgcg tcgagcgcgc tgatggtcac catggcggtg
      961 aggctgtcgc tggtgaacgt tacggtctgg gctcgcgcgt agtcgacgga cctgacgccg
     1021 gcaccctcgg cggacagccg ctgcagctgt gcgacttcgc cctcgagtgc ctgcacggtg
     1081 agggcgaact tcacccggtc gcccaggctg gccgggaccg ggtcgaggcg gtcgaacatc
     1141 tcgaggacct cacccaggat ggtgaggtcc tcgccgtcga gcagctcggt gtccctcgac
     1201 gggtcagcct ggtcagggct cattgctcgc ctccccacgt cgggtcgcct tggagcaacg
     1261 acctcagctt cgccaggcac cgaccgcggg tcgggccgat gctgcccacc ggcataccca
     1321 gggcggtgga cacctgcgca tagtccgggc ggtccgcgaa ggcgaccacg cgcaacagct
     1381 cgcggcactt gtgcggcagg gtctgcagat gtccccacag cacccgttgg cgctcgctga
     1441 gcaccgcgac cccctcgggg ccagggtcgc gatcctgcag gtccatcccg aggtcgggtg
     1501 ccgacggcga ccgctgcgcc tggcgtccga cgcgccagct ctctcgcttg gtcgtgatga
     1561 gcagccactg catga
//
LOCUS       DASYFY010000067         2795 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_372463, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000067 DASYFY010000000
VERSION     DASYFY010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372463"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..411)
                     /locus_tag="VGN19_01210"
     CDS             complement(<1..411)
                     /locus_tag="VGN19_01210"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7194533.1"
                     /translation="MRVLVDSTSLPPDRGGVGRYVDELVARLPSAGAEVFVVCQAADV
                     GFYSRLVGQDHVFAAPRWVKRPALRFVWEQVGLPALVRRLEPDVMHSPHYTLPIWLNS
                     PGIARVVTLHDATFFTHPELHHGVKAKFFAAWTRL"
     gene            complement(420..1556)
                     /locus_tag="VGN19_01215"
     CDS             complement(420..1556)
                     /locus_tag="VGN19_01215"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEV7194534.1"
                     /translation="MPVVGGTHPLEVTFVLEQLRARVPGGTGRYAGELAAALLATQPQ
                     DARLRGVVASRGGVNVVLPHQASLAISSVGVPGRVLSRLWERGIGPAPAGAVVHAPTL
                     LVPPRRRRSQLVVTIHDTVPWTHPETLTARGVAFHRRMGARAARDAALVVTPTEAVAA
                     RVREVLNPRAEVVAVSPGVSPLADPDPLVRQRIAAQLPARPFVLFVGTAEPRKGLDVL
                     VRAMGHPAASGLALVVVGPPGWGDVDVRGMAEAAGVLERVTILGRVSDAELSAVYDQA
                     AVLAMPSRAEGFGLPVIEAMSKGVPVVTSDDPALVEVGAGAALVVPVGDADALAESLA
                     TVVDDHLTRTLLAENGLRRVSDFSWLVTASTLWRMYRSLTGGPH"
     gene            complement(1547..>2795)
                     /locus_tag="VGN19_01220"
     CDS             complement(1547..>2795)
                     /locus_tag="VGN19_01220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194535.1"
                     /translation="LTIAVERAPRPRKVWAAVAVALPTLLLGAFVAILRSRVSHPLEV
                     YSTSLDPTKFLPTLGKQLVATRPLSYTWFRHGAGIPSLSHALAPTPTALILVAALTAV
                     TAVAMLRVPKFPRTQVAAMAVLGASLMLAAGSVTAVSAYWQHSLVLGDAYIGVFMQTL
                     GLSLVGLAAVSLRPRPTAAWARHSTVAVAVVCGFAIGWTVVATSQQNARVVTASDPRL
                     GSWASQPQLGFPRALTGAAFERGLLVGDPSNGTVYGNPGGPWFNSTFLSYAAHRAVRV
                     PNQWPFWSLAPDATTRLPGCARVGPCEPASGPVYTVTVRAASYERGVVVLARAARIDQ
                     LDPQPTDASVTTEQARVFLSGYGGPSRPCARTQGAAGPLVVSPTKQRVVSTGAGWTII
                     DVTFAAPGIPASGIGQLSGSSCL"
BASE COUNT          512 a          964 c          958 g          361 t
ORIGIN      
        1 caacctggtc caggcggcga agaacttggc cttgacgccg tggtgcagct ccgggtgggt
       61 gaagaaggtc gcgtcgtgga gggtcacgac ccgcgcaatg ccggggctgt tcagccagat
      121 gggcaaggtg tagtgcggag aatgcatcac gtcaggctca agcctgcgga ccagggccgg
      181 caggccgacc tgctcccaga cgaaccgcag cgcgggtcgc ttcacccagc gcggagctgc
      241 gaagacgtgg tcctggccca ccagacggct gtagaaaccg acatcggcgg cctgacacac
      301 gacgaagact tcggcgccgg cagagggcag ccgtgcgacg agctcgtcaa cgtaacggcc
      361 gacgccaccg cgatccggcg gcagcgaggt gctgtcgacc agtacccgca ccaaatgagt
      421 caatgtggcc ctcccgtcag cgaacggtac atccgccaga gcgttgaggc cgtgaccaac
      481 caactgaaat ccgacacgcg tctcagccca ttttcagcaa gaagcgtgcg cgtcaggtgg
      541 tcgtcgacca ccgtcgccag cgactcggcc aaggcgtccg cgtctccgac cggcaccacc
      601 agggctgcgc ctgcccccac ctccaccagg gcggggtcgt cgctcgtgac cacgggcacg
      661 cccttggaca tggcctcgat gaccgggaga ccgaagccct cggcccgtga aggcatcgcg
      721 aggacggcag cctggtcata cacggcgctg agctcggcat cgctgacccg gcccaggatc
      781 gtgacgcgct ccaggacgcc tgccgcctca gccatgccgc gaacgtcgac gtcaccccag
      841 cccggcgggc cgaccaccac gagggccaga ccagacgcgg cagggtggcc catcgctcgc
      901 accaggacgt ccagaccctt gcgcggttcg gcagtcccga cgaagaggac gaagggccga
      961 gccggcaact gggcggcgat ccgttgacgc accaggggat ccgggtccgc gagcggactg
     1021 acgcccggcg acacggcgac aacctccgcg cgtgggttca gcacctcacg cacccgggcg
     1081 gcgacagcct cggttggcgt cacgaccagg gccgcgtcgc gggctgcgcg ggcccccatg
     1141 cgccgatgga aggccacccc gcgtgcagtc aaggtctcgg gatgggtcca cgggacggtg
     1201 tcgtggatcg tcacgaccag ctggctccgt cgccgacgtg gcggcaccag cagggtgggc
     1261 gcgtgaacca cagctccagc cggtgcggga ccgatgcccc gctcccagag ccgggacaac
     1321 acccggcccg gcaccccaac ggaactgatc gccaggcttg cctggtgcgg caggaccacg
     1381 ttcactccgc ccctcgacgc caccaccccg cgcagccgcg catcctgcgg ttgcgttgcg
     1441 agcagcgcag cggcgagttc tccggcatac cggccggtcc cgccggggac acgggcccgc
     1501 aactgttcga gcacgaacgt gacttcgagt ggatgggtgc ccccgactac aggcacgaag
     1561 acccgctcag ctgtccaatg cccgaggcag gtatgccggg ggctgcgaac gtgacgtcga
     1621 tgatcgtcca gccagccccc gtggagacaa cccgctgttt cgttggactc accacaagcg
     1681 ggccagcagc tccttgggtc cgggcgcacg ggcgcgacgg acccccgtag cccgagagaa
     1741 aaacgcgggc ttgctcggtg gtcacggatg cgtcggttgg ctgggggtcg agctggtcga
     1801 tccgggcagc tcgagcgagt accacgacgc cacgctcata ggaggctgcg cgaaccgtca
     1861 ccgtgtagac cggacccgat gcgggctcgc acgggccgac ccgagcgcag cctggcaggc
     1921 gcgtggtggc gtcgggtgca agactccaga acggccattg gttgggcacc cgcactgcgc
     1981 gatgagcggc atacgagaga aacgtgctgt tgaaccaggg ccccccgggg ttgccgtaga
     2041 cagtcccgtt cgacggatct ccgaccaaca gcccgcgctc gaatgccgcg ccggtcaacg
     2101 ctcgaggaaa gcccagctgt ggctgcgacg cccagctgcc aagccggggg tccgacgctg
     2161 tgacgacgcg tgcgttctgt tggctcgtgg caaccacggt ccagccgatc gcgaagccgc
     2221 agacgacagc gacggccacc gtggagtgcc gtgcccaagc cgcagtcggc cgaggtcgta
     2281 gtgacacggc agccagtcca accagactca gtcccaaagt ctgcatgaag acgccgatat
     2341 aggcgtcgcc cagcaccagg ctgtgctgcc agtaagccga tacagcggtc accgagccgg
     2401 cggccagcat cagcgaggcg cccagcacgg ccattgcagc gacctgggtt cggggaaact
     2461 ttgggacccg aagcatcgct acggccgtta ccgcagtgag cgccgcgaca aggatcagcg
     2521 cggttggcgt cggcgcgagg gcatggctca ggctgggaat ccccgcccca tgccgaaacc
     2581 acgtatagga cagcggccgc gtggccacca gctgctttcc cagggtggga aggaacttgg
     2641 tggggtccag gctcgtgctg taaacctcaa gtgggtggct cacgcgggag cgcaagatcg
     2701 caacgaacgc accgagcagg agagtcggga gcgccacggc gaccgcggcc caaaccttcc
     2761 gtggccgtgg cgcgcgctcg accgcgatgg tcagg
//
LOCUS       DASYFY010000068         2187 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_214728, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000068 DASYFY010000000
VERSION     DASYFY010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214728"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VGN19_01225"
     CDS             <1..233
                     /locus_tag="VGN19_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194536.1"
                     /translation="VRHCMARANPGDVVVLCVDNHAEVLSELELMTHSAQPGAHSAHG
                     IGDPDLDPVELQSEAQVSGDEAAATEPEPAHG"
     gene            complement(297..>2187)
                     /locus_tag="VGN19_01230"
     CDS             complement(297..>2187)
                     /locus_tag="VGN19_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEV7194537.1"
                     /translation="PDQVVAAFVWRRRGRGQGLGHGIGPVLSAWLEGGDVVEEHGRLI
                     SQGDPGERPSILKPTIPVASITGTNGKTTTTRLLGHIGMTAGLLTAWSSTDGIVVQGE
                     TIQDGDYPGPAGARGVLTAPGVQLGILETARGGMLLRGMGVWTNDVSVVTNVSADHLG
                     LHGIDTVDQLAEVKAIVTKATKPNGWVVLNGEDPRVWAMRSGIKARPWVFTLRSDAPA
                     IRESLDQGGRAITVLDGEITVLESGQDPDRLVSILDVPATLSGLSQHNIANCLAGAAA
                     ALGLGLPRAAVVEGLRTFAPDDRLNPGRMNTYTLKRGDGASVTVIVDLAHNEAGLEAL
                     MDVAHGLKAPGGQVHLGLGLAGDRTDELLESIGELAGLRADRIVAAHKEHYLRGRTMY
                     ELESHLRAGLARAGVADIESFDTELSGLQALIPGAADGDVVALMCHSERAQVAAWLAQ
                     QGAGPDSPDDIRRKVVAARGEHEFEDQITVLWAMPDEQARPTAVAKLRAQRPGDPRLA
                     FELAGSYDAAGQEHEAIPLYREALAAGLREPYRHRARIQLASSLRVVGQSDLAYSLLT
                     ELAVERPGNTAVEAFRALAGLDSGRANQAVADLVDALLHHSGDEDALAYGHVLHAYAA
                     ELRER"
BASE COUNT          310 a          798 c          751 g          328 t
ORIGIN      
        1 cggtgcgaca ctgcatggcc agggcgaacc ccggcgatgt ggtggtgctc tgcgtggaca
       61 accacgccga ggtcctcagt gagctcgagc tgatgacgca ctcggcccag cccggcgctc
      121 actccgccca cggcatcggc gaccccgacc tcgaccccgt ggagcttcag tcggaggccc
      181 aggtgtccgg tgacgaggcg gcagccacgg agcccgagcc cgcgcacggc tgacgccgcg
      241 accacgccgc gaccagccgg cggcaccgcc gttagccctg ccgatctccg gtggggctag
      301 cgctcgcgca gctccgcggc atacgcgtgc aggacgtgcc cgtaggcgag ggcgtcctcg
      361 tcgcctgagt ggtgcagcag ggcatcgacc aggtccgcaa ccgcttggtt cgctcgcccg
      421 ctgtccagcc cagccagcgc tcggaaggcc tcgaccgcgg tgttccccgg ccgctcgaca
      481 gcgagctcgg tcaacaacga gtaggccagg tcggactggc ccacgacccg cagactggac
      541 gcgagctgga tccgggcgcg gtgccggtac ggctcccgta atcccgccgc cagggcttcg
      601 cggtagagcg gaatcgcctc atgctcctga ccggcggcgt catagcttcc agccagctcg
      661 aaggccagtc gtgggtcgcc cgggcgctgg gcgcgcagct tggcgacggc agtcggtcgc
      721 gcctgctcgt cgggcatcgc ccacaggacg gtgatctggt cctcgaactc atgttcgccg
      781 cgcgctgcga ccaccttgcg ccggatgtcg tccggggagt cagggcccgc tccctgttgc
      841 gccagccatg ccgcgacctg ggcccgctcg gagtggcaca tcagcgccac cacgtctccg
      901 tcggcggcac cggggatcaa cgcctgcaga ccgctgagct cggtgtcgaa agactcgata
      961 tccgcgacgc cagcgcgggc caaaccggcc ctcaggtggc tttccagctc gtacatcgtg
     1021 cgtccgcgca ggtagtgctc cttgtgggcg gcgacgatcc ggtcagcacg cagtcccgcg
     1081 agctcaccga tggactcgag cagctcgtcg gtgcggtcgc cggcgagccc gagtccgagg
     1141 tggacctggc cgccgggggc cttcaggccg tgcgccacgt ccatcagtgc ttccaggccg
     1201 gcctcgttgt gggccaggtc gacgatgacg gtgacgctcg cgccgtcgcc acgcttcaac
     1261 gtgtaggtgt tcattcgacc cgggttcagc cggtcgtcgg gcgcgaacgt ccgcagtccc
     1321 tcgaccacgg cggcgcgcgg caggcccagg cccaaggccg cggcagcacc ggccagacag
     1381 ttcgcgatgt tgtgctgtga caggcccgac agcgtggcgg gcacgtccag gatgctgacc
     1441 agacggtcgg ggtcctggcc gctctccagc acggtgatct caccgtccag cacagtgatg
     1501 gcacgcccgc cctggtcgag cgactcgcgg atggccgggg catcggagcg caaggtgaac
     1561 acccagggcc gggccttgat gccggaccgc atcgcccaca cccgggggtc ctcgccgttg
     1621 agcaccaccc acccgttggg cttggtcgcc ttcgtgacga tggccttcac ctcggccagc
     1681 tggtcgacgg tgtcgatgcc gtgcaggccc aggtggtccg ctgacacatt ggtcacaacg
     1741 ctcacgtcgt tggtccagac ccccatccca cgcagcagca tgccgccccg cgcggtctcc
     1801 aggatcccca gctgcacgcc cggcgcggtg agcacgccac gcgccccggc aggcccgggg
     1861 tagtcgccgt cctggatcgt ctcgccctgg acgacgatgc cgtctgtcga ggaccaggcg
     1921 gtcagcagcc cagcggtcat cccgatgtgg ccgagcaggc gggtcgtggt cgtcttgccg
     1981 ttggtgccgg tgatcgaggc gaccgggatg gtgggcttga ggatcgaggg ccgttcacct
     2041 gggtcgccct gactgatcag ccgcccatgt tcctcgacga cgtcaccgcc ctcgagccac
     2101 gcgctgagca cgggcccgat cccgtgtcct agtccctgcc cgcggccgcg acggcgccag
     2161 acaaaggccg ccaccacctg gtcgggg
//
LOCUS       DASYFY010000069         1945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1003348, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000069 DASYFY010000000
VERSION     DASYFY010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003348"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            247..771
                     /locus_tag="VGN19_01235"
     CDS             247..771
                     /locus_tag="VGN19_01235"
                     /inference="COORDINATES: protein motif:HMM:NF024952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HEV7194538.1"
                     /translation="MALAVCLVFDPQADRAIRQLWDRLESEGVSTLATHTHRHHVPHL
                     SYAVLREFDVTAVRAAVEALPAHEPLRLHFDGVGLFRRGRSVLLPSAGGALQGRQSAV
                     VAACQATGADLHRHYRPGTWIPHTSLATRVRRDDLGTMAAAAFDILPLQAVASECVLI
                     DSSTGRRWPLAHLV"
     gene            complement(882..>1945)
                     /locus_tag="VGN19_01240"
     CDS             complement(882..>1945)
                     /locus_tag="VGN19_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MazG family protein"
                     /protein_id="HEV7194539.1"
                     /translation="PSSSARARPTGSRPSPQRLGADGRVPGRLTLLVGSPRIAPGLLT
                     RSAWQALEVADAVLARSGDEPLAEALQESGMPVSHLGALAAPELARRLVTQAQGSDVV
                     WVASADADPGLTDAVASEVSRRPEPPEVEVLVGSWDVPGSRLLDVVAVMDRLRSPGGC
                     PWDAEQTHESLSKYLIEEAHEAAEAIESGDRDHLREELGDVLLQVAFQARVAQDHPQA
                     PFDIDDVAGVLVEKLVRRHPHVFADGDATTPAEVERAWEAIKAQERAAKAEHSGGEAG
                     HEGLLHGIPRSLPTLLAAEKVLSRWERGGGDLGTVGAASSAAEPELGQAMLALVARAR
                     AEGQSADELLRAALHDFAG"
BASE COUNT          275 a          732 c          660 g          278 t
ORIGIN      
        1 cgaccgcgct gcagacgctg tccaacctga acgccgccag cggctaccag gccaacggtc
       61 aacctgtcgg cctacgcggg ccagaccgtg accctcacct ggacgggcac ggaggacgtg
      121 agcctgcaga cctccttcgt cgtcgacgac gcggcggtca acctctcctg aggcggtcca
      181 ccctcaccgc agtcgagatg aacccggcgg gctttcccgg agggttcatc tcgacacaat
      241 ggggtcatgg ccctggccgt gtgtctggtc ttcgacccgc aggccgaccg ggcgatccgg
      301 cagctgtggg accgcctgga gtccgagggc gtcagcacgc tcgcgaccca cacccatcgt
      361 caccacgtcc cgcacctgtc gtatgccgtg ctccgcgagt tcgacgtgac agcggtccgt
      421 gcggcggtcg aggcgctgcc cgcccatgag cccctacgcc tgcatttcga cggtgtgggc
      481 ctgttccggc gcgggcgctc cgtcctgctt ccgtcggccg gaggcgcctt gcagggccgg
      541 cagtcagccg tcgtggcggc gtgccaggcc accggcgccg acctccatcg ccactaccgg
      601 cccgggacct ggatcccgca caccagcctg gcgactcggg tgcgtcgaga cgacctgggg
      661 acgatggcag cggcggcctt cgacatcctg ccgttgcagg ccgtcgcctc ggagtgcgtg
      721 ctcatcgaca gctccaccgg ccgacgatgg ccgctggccc acctcgtcta aggcggtcgc
      781 cggccacgac ttctgccaca tcgccagtac ttgtggtcga agaaccggtt tggccaccag
      841 aactgccatc tcgccagaac tcgtggactg gccggcctgg gtcagccggc gaagtcgtgg
      901 agcgctgctc gcagaagctc gtcggccgac tgaccttcgg cacgagcccg cgccacgagg
      961 gcgagcatcg cctgcccgag ctccggctca gcagcactgg atgcggcacc gaccgtgccc
     1021 aggtcacctc caccgcgctc ccagcgggac agcaccttct cggcggcgag caacgtgggc
     1081 agcgaccgcg gtatgccgtg cagcaggccc tcgtgccccg cctcacctcc ggagtgctcg
     1141 gccttggcgg cgcgctcctg cgccttgatg gcctcccagg cccgctcgac ctccgcaggc
     1201 gtggtcgcgt cgccgtcggc gaacacgtga gggtggcggc ggaccagctt ctcgacgagg
     1261 acgcccgcga cgtcgtcgat gtcgaaaggg gcctgcgggt ggtcctgggc gacccgcgcc
     1321 tggaacgcca cctggagcag cacgtccccg agctcctcgc gcaggtggtc gcggtcccca
     1381 gactcgatgg cctcggccgc ctcgtgggcc tcctcgatga ggtacttgga cagcgactcg
     1441 tgggtctgct ccgcgtccca gggacagccg ccgggcgagc ggagccggtc catcaccgcg
     1501 accacatcga gcagtctcga ccccggcacg tcccacgacc cgaccaggac ctccacctca
     1561 ggcggctcag gccgacgcga cacttccgag gccacggcgt cggtgagtcc ggggtcggcg
     1621 tcggccgagg ccacccacac cacgtcgctg ccctgcgcct gagtgaccag gcgacgcgcg
     1681 agctcggggg cggcgagggc accgaggtga gagaccggca taccagactc ctgcagtgcc
     1741 tcggccaggg gctcgtcgcc ggacctggcc agcacggcgt cggcgacctc gagggcctgc
     1801 cacgccgaac gggtcagcag cccgggcgcg atgcgcgggc tgccgaccag cagcgtcagt
     1861 cggcccggca ccctgccgtc agcccccagc cgctgcgggc tgggccttga tccagttggg
     1921 cgtgctcttg ccgaagagct gggcg
//
LOCUS       DASYFY010000070         5013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_4705, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000070 DASYFY010000000
VERSION     DASYFY010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5013
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4705"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VGN19_01245"
     CDS             complement(<1..265)
                     /locus_tag="VGN19_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194540.1"
                     /translation="MPLSTDRTGAPGGPATSSPRWPGPYLDAGATNGRTTGWGASNGQ
                     PQMLVELDGPEALLGPEGLGGPEALGMLAVFVADVLDARWGSGD"
     gene            252..557
                     /locus_tag="VGN19_01250"
     CDS             252..557
                     /locus_tag="VGN19_01250"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEV7194541.1"
                     /translation="MDSGTVSHVGVVAGKRTLTVLHPNGLRSTYEPVAGSVTAGQVVR
                     RGETIGALMLDGTHCPPQPCLHLGAVNGGTYLDPLTLLAQTRVRLLPLTPSSASGAP"
     gene            complement(599..1528)
                     /locus_tag="VGN19_01255"
     CDS             complement(599..1528)
                     /locus_tag="VGN19_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019511990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009037 - tyrosine-based site-specific
                     recombinase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEV7194542.1"
                     /translation="MSESTVQAIDAFERHLRSERGRSEHTTRAYLGDVRSLCRFLEAQ
                     SETGQSSATELGDVRLADLRAWLASLAKAGAARSTIARRSASVRTFFGWAVRTGRISV
                     DPSLRLVAPRRTGHLPAVLRESDAKALLDVAAVASDDQDPIHLRDRAALELLYASGIR
                     VGELTGLDVDHVDLGSGLVRVMGKGNKERTVPFGVPARDAICAWLALGRPKLTNELSG
                     AALLLGRRGRRADARQIRSALHALLRHVPDAPDLSPHGLRHSAATHLLEGGADLRLVQ
                     ELLGHASLATTQIYTHVSVDRLKQSYRQAHPRA"
     gene            complement(1648..2775)
                     /gene="dprA"
                     /locus_tag="VGN19_01260"
     CDS             complement(1648..2775)
                     /gene="dprA"
                     /locus_tag="VGN19_01260"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HEV7194543.1"
                     /translation="MRRHLRALPEGDRAARIAWARLVEPRDRLALELVARHGAQRALQ
                     TLTPSSPLGQRVSARAETLDVVRDLEIARRLEARILVPGDDEWPEGFGGLEDGPLCLW
                     VRGPLNLASVCARSVSIVGARAATSYGVRQAGELSAGMAERGFAVVSGAAYGIDAAAH
                     RGALAAEGATVAFTAGGIDRPYPKGHEELYARLWREGLVVSEVPPGSAPTAVRFIARN
                     RMIATVSQGTVVVEAGLRSGSLNTARTAAEHNRVVCAVPGSVESAVSAGCHEMIRDGR
                     ATLVTDASDVAEMVGPMGEPTAERSGDVRPGDELEPAVRAVLAALPVRKPATPTELAA
                     RCGQRGADVLGALGVLELAGLARRGAGGGWSKTARPRNASP"
     gene            complement(2772..4306)
                     /locus_tag="VGN19_01265"
                     /pseudo
     CDS             complement(2772..4306)
                     /locus_tag="VGN19_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927450.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
     gene            complement(4303..4674)
                     /locus_tag="VGN19_01270"
     CDS             complement(4303..4674)
                     /locus_tag="VGN19_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEV7194544.1"
                     /translation="MADDTDRRRTLGDYGERLASRYLKDQGLSILDRNWRCAHGEIDL
                     VARDGECLVFCEVKTRRSVRFGDPVEAITAAKAARLRRLAAAWLRAHEVRPQRIRIDV
                     VGIVRPADGPAILRHLVGVGA"
     gene            complement(4792..>5013)
                     /locus_tag="VGN19_01275"
     CDS             complement(4792..>5013)
                     /locus_tag="VGN19_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2469 family protein"
                     /protein_id="HEV7194545.1"
                     /translation="ETERRFYLCNSVDVKVRSDGGEVYFDVTMQDAWVWDIYRPARFA
                     RQVRVVTFKDVNVEELAKSELELPKGPGF"
BASE COUNT          797 a         1834 c         1656 g          726 t
ORIGIN      
        1 ggtccccact cccccagcgc gcgtcgagca cgtcggccac gaacaccgcg agcatcccca
       61 gggcttcagg ccccccgagt ccctcgggcc ccaagagtgc ttcgggcccg tcgagctcca
      121 cgagcatctg gggctggccg ttggaggcac cccatcccgt ggtgcggccg ttcgtggccc
      181 ccgcatcgag gtacggaccc ggccaccgtg ggctggacgt ggccggtccc cctggggcac
      241 ctgtgcgatc ggtggacagc ggcaccgtga gccacgtcgg tgtcgtcgcg ggcaagagga
      301 cgctgaccgt cttgcatccg aacggcctcc gctcgaccta cgagcctgtt gccgggtccg
      361 tcacggccgg tcaggtcgtg cgtcgcggcg agacgatcgg ggcgttgatg ctcgatggaa
      421 cccactgccc gccacagcca tgtctgcatc ttggggcggt caacggcggg acgtatcttg
      481 acccgctgac cctgttggcc cagacgaggg tgcgccttct ccccctgacg ccgagttccg
      541 ccagcggtgc cccctgacga cctcctcgcc gcgcgggcct gttgagcgag gtgaccagtc
      601 aggctcgggg atgcgcctgc cgataggact gcttgagccg gtccaccgac acatgggtgt
      661 agatctgggt ggtcgcgagg cttgcatggc cgagcagctc ctggaccaga cgtaggtctg
      721 cgccgccctc gagtaggtgg gtggccgcac tgtggcgcaa gccgtgcgga gagaggtcag
      781 gcgcgtcggg gacgtgccgc aggagggcgt gcagtgctga ccggatctgg cgggcgtcgg
      841 cacgccgacc gcggcgcccc agaagcaacg ccgcgccact gagctcgttc gtcagcttcg
      901 ggcggcccag cgcgagccag gcgcagatcg cgtcccgggc aggaacgccg aacgggaccg
      961 tccgctcctt gttgcccttt cccatgaccc gaacgagtcc acttcccagg tcgacgtggt
     1021 ccacgtcgag tcccgtcagc tctccgaccc ggattccgct ggcgtatagc agctccagcg
     1081 cggcgcggtc gcgcaggtgg atcgggtctt ggtcgtcgct agccaccgcg gcgacgtcga
     1141 gcagcgcctt ggcgtcggac tcacgtagga ccgcaggcaa atgccctgtt cgccgtggtg
     1201 cgacgaggcg cagtgagggg tcaaccgaga tgcggcctgt gcgcaccgcc cagccaaaga
     1261 aggttcgcac cgaggcgctg cgtcgagcaa tcgtcgatcg ggcggcacct gccttggcca
     1321 gcgaggccag ccacgctctg agatcggcga gtctgacgtc gcccagctcg gtcgcgctgg
     1381 actggcctgt ctcgctctgc gcctccagaa agcggcagag gctgcgcaca tcaccgaggt
     1441 aggcacgagt cgtgtgctcc gaacgtcccc gctcgctgcg cagatgacgc tcgaaagcat
     1501 cgatcgcctg cacggtcgac tcgctcacct gcccaccgtc gcaaacgctt gcctcccgga
     1561 caagccgcca ccccgcagtc ccccatcctc gtagtccacg cagtccccgc actgcacgca
     1621 cgctgcgctt tgtcgagccc gtcactccta cggactggcg ttcctcggtc gcgcggtctt
     1681 ggaccatcct ccgccggcac cgcgccgagc caaacctgcc agctcgagaa ctcccagagc
     1741 ccccagcacg tcggcgccac gttggccgca gcgagccgca agctccgtcg gcgtcgcggg
     1801 cttgcggacg ggcagcgcgg cgaggacggc gcggactgct ggttccagct cgtcgcccgg
     1861 ccgaacatcg ccggacctct cagcggtcgg ctcgcccatg gggccgacca tctcggccac
     1921 gtcgctcgcg tcggtcacca gcgtggcccg accgtcccgg atcatctcgt ggcacccagc
     1981 ggaaaccgca gactccactg accccggcac ggcacagacc acccggttgt gctccgccgc
     2041 agtacgagcc gtgttgagtg atccggaccg gagccctgct tcgacaacca cggtcccctg
     2101 gctcacagtg gcgatcatcc ggtttcgagc gatgaaccgg acggctgtgg gagcggaccc
     2161 cggcgggacc tcgctcacga ccaacccctc tcgccacagc cgcgcgtaca gctcctcgtg
     2221 acctttgggg tagggccggt cgataccccc tgcggtgaag gccaccgtgg ccccctctgc
     2281 ggccagggcc cctcggtggg ctgccgcgtc gatgccgtac gcagcccctg agacgaccgc
     2341 gaagcctcgc tcggccatcc cggccgacag ttcacccgcc tggcgcacgc cgtacgaggt
     2401 cgccgcccgg gcaccgacga tcgacacgct ccgtgcgcag acgctggcca ggttcagggg
     2461 cccccgaacc cacaggcaca gtggcccgtc ctccagccca ccaaacccct caggccactc
     2521 gtcgtccccc ggcaccagaa tgcgcgcttc gaggcgacgg gcaatctcga gatcccgcac
     2581 cacgtcgagg gtttccgcac gcgcgctcac tcgctgaccc agcggactgg agggtgtcag
     2641 cgtctggagc gcccgctgcg caccatggcg cgctacgagc tcgagggcca gccggtcacg
     2701 aggttccacc agtcgggccc acgcgatccg ggccgcccga tcgccttcgg gcagtgcccg
     2761 caagtgtcgt ctcatgccgc cagcgccccg tggttacgca gggccagcgc tctgcctaga
     2821 tcctgacgag tgggtctgga acgtcccgcc aggtcggcca cggtccaggc aacccgcaac
     2881 acgcggtcgt agccgcgaag ggtcagctgg ccccggtcca aggcccggtc gatgtcagcg
     2941 gtgacggacc tggggagacg ccacggccct ctgcggagtc gccctcccgg tatctggctg
     3001 ttgagcgacc agggcgtccc gctccatcgc tcacgttgcg cggctctggc cgcgccgacg
     3061 cgctccgcca cggtggcgct ggtctccccc ggatctccgg acagggagga acgggtcacc
     3121 gccggaacct ccacctgcaa gtcgacacgg tccagcagcg gaccagacag cttgcccagg
     3181 taggcgcgct ttgccatcgg cttgcacagg cactcgctgc ccttgccaaa gcccagaccg
     3241 cacggacacg ggttcgcggc catgacgagc tggaaccgcg cggggaaccg caccgccccc
     3301 ctcgcgcgag agaccacgac aagcccggac tccaggggct gacgcaacgc ctggagggcg
     3361 cccgtcttga actccggagc ctcgtccagg aacagcacgc cgtggtgcgc ctgggaaatg
     3421 gcaccggggc gcaccatgcc gctgccaccg ccgatgatgg ccgcctgaga cgcgctgtga
     3481 tgcggagcga cgaagggggg cacgccaccg atctgaaggt cctcggcctt cacacctagt
     3541 aacgaacgga ccgcaagcac gtcgatggac tgctcacgcg tcaggggcgg taggacggac
     3601 accagccgct cagccaacat cgtcttgccc gaccctggtg gtcccagcat gaacagatgg
     3661 tgacctcccc cggcggccag ccgatggctg ctcgggcttc ctcctggccg atcacgtcga
     3721 caaggtctgg cgactggtcg cgaacctgtt tctgcggcac gggtagtgcg gagacgcccg
     3781 tggtgagcgg gcccgggatc gcgtaaccgg agaccaggtc ggagatgtgc tggacggcgt
     3841 ggacgcggat gtctggcacg agggctgcct ccgccgcgtt gtcgagcggc acgacgacat
     3901 cggagcagcc ggcccgggcg gccgccagca ccgctgggag caccccccga acggcccgca
     3961 cggtcccgtc cagccccagc tcaccgagat ggacgacgcc ggcaaccttg gaggcaggga
     4021 gcacccccag agccgcgagg accgccacgg tgatgggcag gtcgaatccg ctgccgttct
     4081 tcggaatcga cgccggggaa aggttggccg tgatccgctc ttgggccaag gagcgaccga
     4141 tgctggcagc cgcggccttg acccgcccag gggcctgggc acaggcggcg tccgggaggc
     4201 caccgagcat gaaggcggga aggccgttgg acagatgcgc ctcgacctcg accagcgccc
     4261 ccaccaagcc ctcgagggtc accgagcggg tgcgcccgaa ggtcatgccc cgaccccgac
     4321 gagatgccgc aggatggcag gcccgtcggc gggtcgcacg atgccgacca cgtcgatccg
     4381 gatccgttgc gggcgcacct catgcgcgcg cagccaggcg gcagccagac gtcgtagccg
     4441 cgctgccttg gccgccgtga tcgcctccac cgggtcgccg aagcgcacgc tgcggcgcgt
     4501 cttgacctca cagaagacca ggcattctcc gtcacgggcc accaggtcga tctcaccgtg
     4561 agcacagcgc cagttgcggt cgaggatgct gagtccctgg tccttgaggt accgggaggc
     4621 gagtcgctcg ccgtagtcgc cgagggtccg ccgccgatcc gtgtcgtctg ccatccccca
     4681 agcgaaccgg tgcgcacccc ccaggccgga atgaccccgc ttgctcctgt ggacggatcc
     4741 ttctcatcat taggcctgtg gaccaatgca ggtccagacc cagctgatcg cctagaagcc
     4801 gggacccttg ggcagctcga gctcggactt cgcgagctcc tcgacgttga cgtccttgaa
     4861 cgtcaccacc cgaacctgac gggcaaaccg cgcgggacgg tagatgtccc agacccaggc
     4921 gtcctgcatg gtcacgtcga agtagacctc gccaccgtca gaacgaacct tcacgtccac
     4981 ggagttgcac aggtagaaac gacgctcggt ctc
//
LOCUS       DASYFY010000071         1723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_109898, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000071 DASYFY010000000
VERSION     DASYFY010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109898"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..612)
                     /locus_tag="VGN19_01280"
     CDS             complement(<1..612)
                     /locus_tag="VGN19_01280"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEV7194546.1"
                     /translation="MTTPSTADDARLQPAVAAEFASLAGLLAVISEAQWDTPSMCQGW
                     RVREVVAHMTMPARYSQEEFTTELSRCEFDFTRLSNEVASRDASRPADELVASLRSDI
                     MQRWTPPGGGYHGALTHVVIHGLDVTVPLGAPRCSPDQTIRVVLDNLTAGGGHAHFGT
                     VINGRRLQASDLDWSHGSGQVLRGAAADLALALCGRAVPTGRLE"
     gene            complement(609..1064)
                     /locus_tag="VGN19_01285"
     CDS             complement(609..1064)
                     /locus_tag="VGN19_01285"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEV7194547.1"
                     /translation="MTDQAPDTGELSYTRVFDAPREFVFRCMLEPEHLTHFWGPAGVS
                     TPLETIKVDPRPGGVFETIMVNDSDGSRYPTRAVYVEITEPERIVWTEPGSGVTTTST
                     FRDLGGTRTELQIRQANAPEGYRSPEARAGFATSLDRFAAYLGKLGGSR"
     gene            complement(1061..1420)
                     /locus_tag="VGN19_01290"
     CDS             complement(1061..1420)
                     /locus_tag="VGN19_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7194548.1"
                     /translation="MTVAEDRLDATFTALADPTRRAIVARLASGDATVNQLAAPFDMT
                     LPGISKHLKVLERCGLISRTRRAQFRPCHLEGEVLDTALSWIEENRRAWNERFDKLDE
                     HLRDLQSTPSPPRKGTG"
BASE COUNT          240 a          547 c          631 g          305 t
ORIGIN      
        1 ctcgagccgt cccgtcggga cggcgcggcc gcacagcgcg agtgccaggt ctgcggctgc
       61 gccgcgcagg acctggcccg agccgtgcga ccagtcgagg tcgctggcct ggaggcggcg
      121 gccgttgatg acggtcccga agtgggcgtg gccgccaccg gccgtgaggt tatcaaggac
      181 gacccggatg gtctggtcgg gggagcagcg gggtgcgccc agcgggacgg tcacgtccag
      241 cccgtggatt actacgtggg tgagcgcgcc gtggtagccg ccgccgggcg gcgtccagcg
      301 ctgcatgatg tcggaacgga gactggcgac gagctcgtcc gccggccggc tcgcgtcccg
      361 gctggccact tcgttggaga gccgggtgaa gtcgaactcg cagcgcgaga gttcggtcgt
      421 gaattcctct tgcgagtagc gcgcgggcat cgtcatgtgc gcgacgactt cgcggacccg
      481 ccagccctgg cacatcgacg gggtgtccca ctgggcctcg gagatgacag cgagcaggcc
      541 agccagactg gcgaactcgg cagccacggc gggctggagg cgggcgtcgt ctgccgtgga
      601 tggtgtggtc atcgtgagcc tccgagcttg ccgaggtatg cggcaaagcg gtccagtgac
      661 gtcgcgaacc cggcccgcgc ctcggggctg cggtatccct cgggggcgtt cgcctgccgg
      721 atctggagtt cggtgcgcgt gccgccgagg tcgcggaagg tcgaggtcgt tgtcacgccg
      781 gagccgggct cggtccagac gatccgctcg ggctcggtga tctcgacgta cacggcccgt
      841 gtcgggtaac ggctgccgtc ggagtcgttg accatgatgg tctcgaacac cccgcccggg
      901 cgcgggtcga ctttgatggt ctccaggggc gtgctcaccc cggccgggcc ccagaaatgg
      961 gtcaggtgct ccggctcgag catgcagcgg aagacgaact cgcgcggcgc gtcgaacacg
     1021 cgggtgtagc tgagctcgcc ggtatcaggg gcctggtcag tcatcccgtt ccctttcgtg
     1081 gcggggaagg cgtgctctgg aggtcccgca ggtgctcgtc gagcttgtcg aaccgctcgt
     1141 tccaggcgcg ccggttctct tcgatccagc tcagggccgt gtcgagcacc tcaccttcca
     1201 ggtggcaggg ccggaactgg gcacgccggg tccgcgagat caggccgcag cgctcgagca
     1261 ccttcaggtg tttggagata cccgggagcg tcatgtcgaa cggcgcggcc agctggttca
     1321 ccgtggcgtc cccgctggcc agccgggcga cgatcgcccg gcgcgtcgga tccgccagcg
     1381 cggtgaaggt ggcatcgagc cggtcctcgg ccacggtcat gatcggcctc ccctcgtcac
     1441 tcttacttca ccacatggtt atttagctgt caagttaaat acgagttgtg accggaccag
     1501 cgtccagccc cgccacgacc gtcggtgaag cgagccgggg tactgccatc gcgacctgga
     1561 acctgcgaat tcgaagcagt ggtcttctgc atgccatgca gcatggtttc gtctgaccac
     1621 gtcgcgatgg gtctggttgc cgcagttcag ggcggctctg gtgtccggtg acgtctggct
     1681 cggtccggcg aaatctggcg gcgttggtcc ttggtttggt cct
//
LOCUS       DASYFY010000072         2284 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1633877, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000072 DASYFY010000000
VERSION     DASYFY010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1633877"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..678
                     /locus_tag="VGN19_01295"
     CDS             238..678
                     /locus_tag="VGN19_01295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018778925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7194549.1"
                     /translation="MTPEELANLAYLRRARDLMDREYARPLEVAELARAALMSTAHFS
                     RQFRAAYGETPYAYLLTRRIERAKALLRRGDLSVTEVCMAVGCSSLGSFSARFTELVG
                     QTPTAYRKRDHAALASVPGCVAKDLTRPSRKPSTNGEALPALTP"
     gene            689..1093
                     /locus_tag="VGN19_01300"
     CDS             689..1093
                     /locus_tag="VGN19_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018191432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194550.1"
                     /translation="MDLTLSTCFVLVHDPDQALTFYRDALGLELRNDVARERFRWITV
                     GAPSQPGVGIVLTNYLNGSPADSDALEALVAKGALNGVHFRTDDLDATYEKLQASDAE
                     IVQEPTQQPWGTRDCAVRDPSGNLVRIDQPPA"
     gene            1339..1626
                     /locus_tag="VGN19_01305"
     CDS             1339..1626
                     /locus_tag="VGN19_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194551.1"
                     /translation="MTCGGELTCGDELTCGGPVGGTESGGDSSWLVAGFGGVAGPDDV
                     RGPDDVRGAEWVGAGNRTRAGGFVSAGAEGVDACVGPVVASTVATTLDAAS"
     gene            2001..>2284
                     /locus_tag="VGN19_01310"
     CDS             2001..>2284
                     /locus_tag="VGN19_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194552.1"
                     /translation="MVNPSSRDGMGDAHARNREWLVARHYAHLLQQGMGVAGVEEDVG
                     IEPAISLAPGERASFRTIVVVEWYHGWGDLRVGPRSRARGWGDRQGASVLA"
BASE COUNT          344 a          768 c          820 g          352 t
ORIGIN      
        1 tggcgctctc gttggctcgt gccttggccg tcgcgcgcgt gctgcaggcg cccctggccg
       61 gggaggccgt gacgttggtg ccccaaggtt tcggcgagac cagcccggtg gctacgaact
      121 cgacggtcgt gggtcaggcg agcaaccggc gcgtcaccat cgtgttgccc aaagagtgac
      181 cgcgcactac ggccaacgct gctgcgggac gggccgacgc cctcctaggc tggcgttgtg
      241 acccccgagg agctggccaa cctggcctac ctccgtcgtg ctcgcgatct gatggaccgc
      301 gagtacgcgc gaccgctcga ggtggccgag ctcgctcgtg ccgcgttgat gtcgacggcc
      361 cacttctccc gccagttccg cgcggcatac ggggagacgc cctatgccta tctcctgacg
      421 cgacggatag agcgagccaa ggcgctcctg cgccgcggcg acctgtcggt gacggaggta
      481 tgcatggcgg tcgggtgttc gtcgctgggc tcgttcagcg cgaggttcac cgaactggtg
      541 gggcagacac cgacggcata ccggaagcgc gaccacgcgg ctctcgccag cgtgcctggc
      601 tgcgtcgcga aggacctcac ccgccccagc cgcaaaccca gcacgaacgg agaagcgctg
      661 ccggcgctga ctccttaggg tttgttgtat ggatctgact ctgtcgacgt gcttcgtcct
      721 ggtgcacgac cccgaccagg cgctgacctt ctaccgtgac gcactcggcc tcgagctgcg
      781 caacgacgtc gcccgcgaac gctttcgctg gatcaccgta ggcgccccgt cccagcccgg
      841 ggtggggatc gtcctcacca actacctgaa cggaagtccg gccgacagcg acgccctcga
      901 agcgctggtg gccaagggtg cgctgaacgg agttcacttc cgtaccgacg acctcgacgc
      961 cacctacgag aagctgcagg cctctgacgc cgagatcgtg caggagccga cccagcagcc
     1021 gtggggtacg cgggactgtg ccgtgcgtga tccctccggc aacctggtgc gcatcgacca
     1081 gccgccggcc tgacagccgc tcagcgtacg actgccgtcg ctcgaccctg accggcgctc
     1141 gaggcgacgg acaccgagca gccactgtgc agcggcgcca gtgatgccgt catggagaac
     1201 gacaatgacg cgcctgcggg cccgaggcgg gtttgagaga gcccaccgag gctcatcacg
     1261 accgtcactg gtgccgaccc cgccgccgct gaccccctca acacagcccc ggtacctgtc
     1321 gccgcacacg acaaggcggt gacctgcggg ggcgagctga cctgtggtga cgagctgacc
     1381 tgtggtggcc cggttggcgg taccgagagc ggtggcgaca gtagctggct ggtcgccggc
     1441 ttcggcggcg tcgccggtcc agacgacgtt cgcggtccag acgacgttcg cggtgcagag
     1501 tgggtgggcg ccggcaatcg cacccgcgcc ggggggttcg tgagcgcagg ggcggagggc
     1561 gtggatgcct gcgtgggtcc cgttgtcgcc tccaccgtcg ccaccaccct ggacgccgcc
     1621 tcctgagctc gggggcgggg gcgcaccccg gctgaccagg atgaggcgcc cgcgaccaga
     1681 aggacaacag tccacgcgac ggcaacgacg cgccggcgtg cccggcgccg gtgagccata
     1741 cggatcgcga cccggcggtc ccgacgcgag ggcgacgggg tgctgctggt cattggtccc
     1801 cctgctcgag tgcggtgttg cgaggcaagt gcagtccgtg cgctcgcgga tcttgcgttc
     1861 cgccggccga ccacccgcag gtaggacgtt cgagcgcttc ggttgtgaca gtgaggaccg
     1921 atcccgccgc gtcacaccgg tccttgtcga cagtcacatc ggtgtcgacg tcgtgtcaca
     1981 tcggggtggg ggagggggcc atggtgaacc cctcgtcgcg ggacggcatg ggagatgcgc
     2041 acgcccgcaa tcgtgagtgg ttggtggcac gccactacgc tcacctgctt cagcaaggca
     2101 tgggggttgc tggcgtcgag gaggacgtcg ggatcgaacc cgccatcagc ctggcgcccg
     2161 gggagcgagc atcgttccgg acgatcgtgg tggtcgagtg gtaccacggc tggggggatc
     2221 tcagagtcgg cccgcgaagt agggcgcgcg gctgggggga ccggcagggg gcgtcggtcc
     2281 tggc
//
LOCUS       DASYFY010000073         1619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1633981, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000073 DASYFY010000000
VERSION     DASYFY010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1633981"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VGN19_01315"
     CDS             complement(<1..665)
                     /locus_tag="VGN19_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7194553.1"
                     /translation="MSTQQSTSAKLQRLDGSPVRVLVVDDESNLTELLSMALRYEGWE
                     VRTASNGVSAVRAAREFQPDAVALDMMLPDFDGLEVLRRMRGDNPNVPVLFLTAKDAV
                     EDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTAVLTDDGSSMLVVGDLTMDEDSH
                     EVTRSGDQIQLTATEFELLRYLMRNPKRVLSKAQILDRVWNYDFGGQANVVELYISYL
                     RKKV"
     gene            838..1257
                     /locus_tag="VGN19_01320"
     CDS             838..1257
                     /locus_tag="VGN19_01320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194554.1"
                     /translation="MSNTPHTLDDPVPVTWAKTETTPYAAAPAAAYAAVHAAVPAAVP
                     AAVPAATTAPALNPPMWSGRKTAVAAALAIGISAAGAAAAAALVPVGSTQSDQGQFQR
                     GFGPGGPGARPGQVPGQQQLQRAPGQVAPANPNGSGT"
     gene            complement(1406..>1619)
                     /locus_tag="VGN19_01325"
     CDS             complement(1406..>1619)
                     /locus_tag="VGN19_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194555.1"
                     /translation="FGIEVFEPATSNTLMAALLVHDLRTGQPEPTAPWREEARDAVHG
                     GLWRTPYAPRSALGLAVLIGLGSART"
BASE COUNT          231 a          577 c          558 g          253 t
ORIGIN      
        1 accttcttgc gcaggtagga gatgtacagc tcgacgacgt tggcttggcc accgaagtcg
       61 tagttccaga cccggtccag gatctgcgcc ttggacagca cccgcttggg gttgcgcatg
      121 agatagcgca gcagctcgaa ctccgtggcg gtcagctgga tctggtcgcc ggaccgggtg
      181 acctcgtggc tgtcctcgtc catcgtgagg tcgccgacga ccagcatcga ggacccgtcg
      241 tcggtgagca cggcagtgcg tcgcatcagc gcgcgcagcc gggcgacgac ctcctcgagg
      301 ctgaacggct tggtgacgta gtcgtcacca ccggccgtca ggcccgcgac gcggtcctcc
      361 acggcgtcct tggcggtcag gaacagcacc ggcacgttgg ggttgtcgcc gcgcatccgg
      421 cgcagcacct cgagtccgtc gaagtcgggc agcatcatgt cgagagcgac ggcgtccggc
      481 tggaactccc gagcggcacg gaccgccgag acgccgttgc tggcggtgcg gacctcccac
      541 ccttcgtacc gcagggccat gctcaggagc tcggtgaggt tgctctcgtc gtcgacgacc
      601 aggacccgca cgggggagcc gtcgaggcgc tggagcttgg ctgaggtgga ctgctgcgtg
      661 ctcatgtccc ctaggaaaca ccgagaacct tgtgtgtgcg cctctgaccg gctgtgggat
      721 tcctgtgagc cctctgtggc cgatcctcag cggtccgata cgcctgccac agcacccgca
      781 cagggcgtgc gccgagggtc gacctcatca ccccgtccca tcgttcggag gcatccgatg
      841 agcaacaccc cccacaccct tgacgatccc gtccccgtga cctgggccaa gaccgagacc
      901 acgccgtatg ccgcagcgcc ggctgcagcg tatgccgctg tgcatgctgc ggtgccggct
      961 gcggtgccgg ctgcggtgcc ggctgcgacg accgcgccgg ccctcaaccc acccatgtgg
     1021 agtggccgca agactgccgt cgcggcagcc ttggcgatcg gcatctccgc tgccggcgca
     1081 gccgcagctg ccgccttggt gcccgtgggc tcgacgcagt ccgaccaggg ccagttccag
     1141 cgcgggttcg ggcccggggg tcctggtgcc cgccccggcc aggtccccgg acaacagcag
     1201 ctgcagcggg cacccggtca ggttgctccg gcgaacccga acgggagcgg gacatgacca
     1261 cccgggacct ggtccgcgcc ctgagcatcg tccgtcgcgg cggctccgcc tcgtcgcacc
     1321 aacaccggac aggcgcggct gcgcgcatgg acttcagcgt gcttccggtc tgcggctcag
     1381 tccgtccgct cgcgtctcag cgagctcagg tccgggccga gcccagcccg atcaggacag
     1441 cgagccccag cgcgctgcgc ggcgcgtagg gcgtgcgcca caggccgccg tggactgcgt
     1501 ctcgcgcctc ttcacgccag ggggccgtcg gctcgggttg cccggtgcgc aggtcgtgga
     1561 cgagcagcgc ggccatgagg gtgttgctgg tggccggctc gaacacctcg atgccgaac
//
LOCUS       DASYFY010000074         7117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_162857, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000074 DASYFY010000000
VERSION     DASYFY010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7117
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162857"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1852
                     /locus_tag="VGN19_01330"
     CDS             <1..1852
                     /locus_tag="VGN19_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR03960 family B12-binding radical SAM
                     protein"
                     /protein_id="HEV7194556.1"
                     /translation="DAYEVGVPNQGVMILYEVLNERPDALAERTYAVWPDLEALMRRS
                     GVPQFTVDAHRNVRDFDLLGLSFSTELGYTNMLTALDLAGIPLHAADRSDDDPLVVAG
                     GHAAFNPEPVADFIDAAIVGDGEEAVLAVTELVGAWKAAGRPGGRRELLLRLARTGGV
                     YVPSLYEVTYLPDGRIQRVAPRPDTPGVPWRVSKHTVMDLDAWPYPKQPLVPLAESVH
                     ERMSVEIFRGCTRGCRFCQAGMITRPVRERSITGIGEMVERGLAATGFEEVGLLSLSS
                     ADHSEIADLTKGLADRYEGTKTGLSLPSTRVDAFNIDLANELTRNGRRSGLTFAPEGG
                     SERIRKVINKMVTEDDLINTVAAAYGAGWRQVKLYFMCGLPTETDEDVLQIADLAKRV
                     IETGRQVSGRRDIRCTVSIGGFVPKPHTPFQWCAQLGAEETDARLAKLRDAIRSDRRY
                     GSSIGFRYHDGQPGLVEGLLSRGDRRIGRVIEQVWRDGGRFDGWSEHFSFQRWMAAAD
                     KAFAELPWPVDVAWYTTRERGETEVLPWDHIDSGLDKEWLWADWQDAQDETEVDDCRW
                     TPCFDCGVCPQMGTEIEVGPTGKTLLPLTILGAGRQDMLVPRAGAVPNHG"
     gene            complement(1804..2430)
                     /locus_tag="VGN19_01335"
     CDS             complement(1804..2430)
                     /locus_tag="VGN19_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194557.1"
                     /translation="MFIQIIQGKCRDAGEMRRLSDEWRDQMGTTAEGWLGGTYGITDE
                     DEFVGVVRFESREAAARNSAKPEQGEWWQRMAACFDGDVSFHDCDNATVFLDGGADDA
                     GFVQVIQGRVEDPERFRRFMEQPMDMLHEQRPEIIGGTIAMEPDGWFTETIAFRSESE
                     AREGEKKEMPEAVRGEFEAEMSAMQDVRYLDLHHPWFGTAPARGTSMS"
     gene            complement(2554..3921)
                     /locus_tag="VGN19_01340"
     CDS             complement(2554..3921)
                     /locus_tag="VGN19_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaminase"
                     /protein_id="HEV7194558.1"
                     /translation="MAELDRARLEALLDREQAAYTERHPHSRELFDAAGNLFGGVPMT
                     WMNMWSGGFPLYLDRARGNRVTDVDGHTYVDFALGDTGAMGGHSPAPTLAAVQRRAAD
                     LGGITTMLPTQDAQWVGAELERRFGMPLWSFTLSATDANRWAIRLARLATGKPKILVF
                     AYCYHGSVDEAFALPGPDGKAQSRPGNVAPPVDLDLTTRVATWNDLDSVRAALAHGDV
                     AAILTEPALTNIGIVLPEAGFLDGLRELATEHGSLLMIDETHTFSAGWGGATRAWGLD
                     PDIVVIGKSIGGGIPSGAYGLSREVATAVTRHTSAGDADIVDVGGVGGTLAGNALSTA
                     AMRATLEEVLTPEAFEHMTGLATAFVAGVQQTFDELDVPWSISQLGARAEYRFARPAP
                     RTGEESAAAADDSLDAYLHLAMCNRGILMTPFHNMALMCPQTSRADVDLHTEVFRQVV
                     GELFA"
     gene            4054..4806
                     /locus_tag="VGN19_01345"
     CDS             4054..4806
                     /locus_tag="VGN19_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03936 family radical SAM-associated protein"
                     /protein_id="HEV7194559.1"
                     /translation="MARQRVPEGPPPALAVQKLRVRYAKRGRLRFSSTRDFQRALERA
                     LRRAGVPMAFSGGFHPHPKVSYANAAPTGTASEAEYFEISVTERVDPESLRVALSDAL
                     PQGLDVLEVVEARPGALADLLQASEWLMEFAGVEAVVLQRAADELLAQERTEVTRVFK
                     TGPRTFDVRSAIVSLGVTTSPRPDCAILRLVVRHTTPAVRPDDVLTALRAVAELAPPT
                     PPLVTRLAQGPLHTATAGVADPLAADKNDDGA"
     gene            4978..>7117
                     /locus_tag="VGN19_01350"
     CDS             4978..>7117
                     /locus_tag="VGN19_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HEV7194560.1"
                     /translation="MASTEDLFQTPDAGDATETPAPARKRARRATKKASAPAPAASVE
                     QAAAEIEVPAEGGAAADGEVLADAPAAALASKTAAPAKKAAKKTAKKAAPRRSAKKAP
                     ETAPAVDLLDDALADLVTEPVTDADPAVMVDALAEEESETPIGEDEVAPAVPSFGLLF
                     QAPDVTKAPTRLSRRAAAKAGPPAAEAATPEPRESDTADRTDAAGEIAPDGTDEQDSE
                     GTDGGRRRRRRGGKGRGRGRTSGDDANEAGDSSDRSAGPDDGDHETAGDADLDQEPSD
                     QGDDGDGRDDADSESQSTRRRRRRRRGGAGGDEQDPPGTVTRVREARRDEPQSVKGST
                     RLEAKKQRRREGREAGRRRTVITEAEFLARRESVERIMVVRERDGKTQIGVLEDDVLV
                     EHYVSRESNVSMAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAAGLENN
                     QPKRIENALKSGDAVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLP
                     DTERGRLKGILKEVVPDSAGVIVRTAAEGASEDELRADVERLTRTWEKIKAKADSKSK
                     AKGGSPVLVHGEPDLTVRVIRDVFNEDFSKLVVAGDQAYAEVSEYLGDVAPDLAERLE
                     KWTSEQDLFTHHRVDEQIAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGN
                     LEETVTKNNIEAAEEIVRQLRLRDIGGIIVI"
BASE COUNT         1123 a         2465 c         2493 g         1036 t
ORIGIN      
        1 cgacgcgtac gaggtcggcg tccccaacca gggcgtcatg atcctgtacg aggtgctcaa
       61 cgagcgtccc gatgcgctcg ccgagcggac ctatgccgtg tggcccgacc tcgaggctct
      121 gatgcgccgc tccggcgtgc cccagttcac cgtggacgcc caccggaacg tgcgcgactt
      181 cgacctgctc gggctgtcct tctccaccga gctcgggtac accaacatgc tcaccgccct
      241 ggatctcgcg ggcatcccgc tgcacgcggc cgaccgcagc gacgatgacc cgctcgtggt
      301 cgcgggaggc catgcggcat tcaaccccga gccggtcgcg gacttcatcg acgcggccat
      361 cgtcggcgac ggcgaggagg cggtcctggc ggtcaccgag ctggttggcg cctggaaggc
      421 cgctgggcgt ccgggtggca ggcgggagct cctgctgcgc ctggctcgca cgggtggggt
      481 gtacgtcccc tcgctctacg aggtgaccta cttgcccgac ggtcggatcc agcgggtcgc
      541 ccctcgcccc gacacgcctg gggtgccgtg gcgcgtgtcc aagcacaccg tgatggatct
      601 cgatgcgtgg ccgtacccca agcagccgct ggtgccgctc gccgagtccg tgcatgagcg
      661 gatgtcggtc gagatcttcc gcggctgcac ccgaggctgc cggttctgcc aggccggcat
      721 gatcacccgg ccggtgcgcg agcggtccat caccggcatc ggtgagatgg tcgagcgcgg
      781 cctggccgcc accgggttcg aggaggtcgg cctgctgtcg ctgtcgtcgg cggaccactc
      841 cgagatcgcg gacctcacca aggggctcgc cgaccggtat gaaggcacca agaccgggtt
      901 gtcgctgccg tccacccgcg tcgacgcctt caacatcgac ctggccaacg aactgacccg
      961 caacggtcgc cggtcgggtc tcacgttcgc cccggagggc ggcagcgagc ggattcgcaa
     1021 ggtcatcaac aagatggtga ccgaggacga cctcatcaac acggtggccg cggcctacgg
     1081 agcgggctgg cgccaggtga agctctactt catgtgcggc ctgcccaccg agaccgacga
     1141 ggacgtgctc cagatcgctg acctggccaa gcgcgtcatc gagaccgggc gccaggtcag
     1201 cggccgacgc gacatccggt gcacggtgtc gatcggcggt ttcgtgccca agccgcacac
     1261 cccgttccag tggtgcgctc agctcggggc cgaggagacc gacgcccggc tggccaagct
     1321 ccgtgacgcg atccgctcgg accgtcggta cggctcctcc atcggcttcc ggtaccacga
     1381 cggccagccg gggctcgtcg agggcctgct gtctcgaggc gaccgtcgga tcgggcgggt
     1441 catcgagcag gtctggcggg acggaggccg gttcgacggc tggagcgagc acttctcctt
     1501 ccagcgctgg atggcagcag cagacaaggc tttcgcggag ctgccgtggc cggtcgacgt
     1561 cgcctggtac acgactcgcg agcgcggcga aaccgaggtt ctgccctggg accacatcga
     1621 ctcagggctc gacaaggaat ggctctgggc cgactggcag gacgcccagg acgagaccga
     1681 ggtcgacgac tgccggtgga caccgtgctt cgactgcggg gtgtgcccgc agatgggtac
     1741 cgagatcgag gtcggcccga ccggcaagac cctgctgccg ctgaccatcc tcggcgcggg
     1801 gcgtcaggac atgctggtcc cgcgggcagg agctgtcccg aaccacgggt gatgcaggtc
     1861 gagatagcgg acgtcctgca tcgcggacat ctcagcctcg aactcgcccc gtaccgcctc
     1921 cggcatctcc ttcttctcac cctcgcgtgc ctcggactcg gaccggaagg caatcgtctc
     1981 ggtgaaccag ccgtccggct ccatcgcgat ggtgccgccg atgatctccg ggcgctgctc
     2041 gtgcagcatg tccatgggtt gctccatgaa gcggcggaaa cgttcggggt cttcgacccg
     2101 gccctggatg acctggacga atccggcgtc gtccgcgccg ccgtcgagga acaccgtggc
     2161 gttgtcgcag tcgtggaagc tcacgtcgcc gtcgaagcac gctgccatcc gctgccacca
     2221 ctcgccctgt tcgggcttgg cggagttacg ggccgccgcc tcgcggctct cgaaccgcac
     2281 cacaccgacg aactcatcct cgtcggtgat cccgtaggtg ccgccgagcc atccctcggc
     2341 ggtggttccc atctggtcgc gccattcgtc gctgagccga cgcatctcgc ccgcgtcacg
     2401 acactttccc tggatgatct ggatgaacac tgtcgagcct ccgcatcttg gccaaggccg
     2461 cttctccctg aagtggtcaa cttttgaagg tacgcctcgg ggcgcgtggt gtcatcgccc
     2521 ccagaggagg tcgcttctgt tcaggtgaac tgttcaggcg aacagttcgc cgaccacctg
     2581 gcggaacacc tcggtgtgca ggtcgacatc ggcgcgggag gtctgtgggc acatcagcgc
     2641 catgttgtgg aacggggtca tgaggatccc gcggttgcac atcgccaggt gcaggtaggc
     2701 gtcgagggag tcgtcggccg ccgccgcgga ctcctctccc gtccgggggg caggcctggc
     2761 gaaccggtat tcggcccggg cccccagctg gctgatcgac cacggcacgt cgagctcgtc
     2821 gaaggtctgc tgcacccctg ccacgaacgc cgtggccagc ccggtcatgt gctcgaacgc
     2881 ctccggggtg agcacctcct ccagggtggc ccgcatggct gcggtggaca gggcgttccc
     2941 ggccaaggtt ccgcccaccc cgccgacatc cacgatgtcg gcgtcgccgg cgctcgtgtg
     3001 ccgggtgacc gcagtggcga cctcgcggct gaggccgtaa gcgccgctgg ggatgccgcc
     3061 gccgatcgac ttgccgatga cgacgatgtc gggatcgagc ccccaggctc gggtggcgcc
     3121 gccccagccg gccgagaagg tatgggtctc gtcgatcatc agcaggctgc cgtgttcggt
     3181 cgcgagctcg cgcagaccgt cgagaaatcc ggcctcgggc agcacgatcc cgatgttcgt
     3241 caaggcaggc tcggtgagga tcgccgcgac gtccccgtgc gcgagcgcgg cccgcaccga
     3301 gtcgaggtcg ttccaggtgg ccaccctggt ggtcagatcg aggtccacgg ggggagcgac
     3361 gttcccgggt cggctctgcg ccttgccgtc aggcccgggc agggcgaacg cctcgtcgac
     3421 cgagccgtgg tagcagtagg cgaacacgag gatcttgggc ttcccggtgg cgagccgggc
     3481 cagtcggatg gcccagcggt tcgcgtcggt cgcggacagc gtgaagctcc aaagcggcat
     3541 accgaaacgt cgttccagct ctgctcccac ccactgggcg tcctgggtgg gcagcatcgt
     3601 cgtgatcccg cccaggtcgg cggcacgccg ctgcaccgcg gcaagggtgg gtgcggggga
     3661 gtggccaccc atcgccccgg tgtcgccgag cgcgaagtcc acgtaggtgt gcccgtcgac
     3721 atcggtgacc cggttgccac gcgcccggtc cagatagagc gggaagccgc ccgaccacat
     3781 gttcatccag gtcatcggca cgccaccgaa aaggttgccg gcggcgtcga acagctcccg
     3841 gctgtgcggg tgacgttcgg tgtatgccgc ctgctcgcgg tccagcagcg cctcaagccg
     3901 ggcgcgatcg agttcagcca tggcgccacg ctaggggcgc agcctcgcct cgcgcgccca
     3961 agtgcggatt ccgtcgtcgg cgcgggcgac gcggcgcgcg gtcgcactcg ccccccaccg
     4021 gcggcagggc cgggtacacc taggctcgtg ggcatggcac ggcagcgcgt tcccgaaggc
     4081 ccccctcccg ccctcgccgt ccagaagctg cgggtgcggt acgccaagcg cggtcggctg
     4141 cggttctcct cgacgcgtga cttccagcgg gcgctcgagc gggccctgcg acgggcgggc
     4201 gtgccgatgg cgttctcggg agggttccac ccccacccca aggtgtcgta cgccaacgcc
     4261 gcgcccaccg gcaccgcgag tgaggccgag tacttcgaga tctccgtgac cgagcgggtc
     4321 gacccggaat cgctgcgggt cgcgctcagc gacgcgttgc cgcagggcct ggacgtcctc
     4381 gaggtcgtcg aggcgcggcc cggtgccttg gccgacctcc ttcaggccag tgagtggctg
     4441 atggagttcg cgggggtcga ggccgtggtg cttcagcgcg ccgccgatga gctgctggcg
     4501 caggaacgga ccgaggtgac gcgggtgttc aagacaggtc cacggacctt tgacgtgcga
     4561 tctgccatcg tgtcgctggg cgtcaccacg tcgccgagac cggactgtgc gatacttcgc
     4621 ttggtcgtac ggcacaccac accggctgta cgccccgacg acgtcctgac cgcgctgcgt
     4681 gcagttgcgg agctggcacc acccacacca cccctggtga cgcggttggc gcaaggcccg
     4741 ctacacaccg caaccgctgg ggtggctgat ccactggctg ccgacaagaa cgacgacggc
     4801 gcctgagttg gtgccgcgcg acctgcgcga gcctggacag gcgtagccaa ccgacttccg
     4861 tgtcgatggc agccgccacc gacacgacgc atgacgcgca ccacgcggct gatcggagtg
     4921 gcccaccagg gccctcgggt gtggccctcg cctcgtgggt gacggaagga cgccgagatg
     4981 gcatccacag aagacctgtt ccagacaccc gacgccgggg acgccaccga gaccccagcg
     5041 ccagcgcgca agcgggctcg ccgcgccacc aagaaggcgt ccgcgcctgc cccagccgcc
     5101 tccgttgagc aggccgcagc cgagatcgag gtcccggctg agggtggggc cgcagcggat
     5161 ggcgaggtgc tggctgacgc gcccgcagcc gcgttggcga gcaagaccgc tgcgccggcc
     5221 aagaaagcag caaagaagac cgcgaagaag gccgccccgc ggcgctcggc caagaaggcg
     5281 cccgagacgg ctccagccgt ggacctcctt gacgacgccc tggcggacct ggtgacagaa
     5341 cccgtgacgg acgccgaccc cgcagtgatg gtggacgcgc tcgcggagga agaatccgag
     5401 accccgatcg gcgaggacga ggtcgcaccc gctgtcccca gcttcggcct gctgttccag
     5461 gcccccgacg tgacgaaggc tccgacccgg ctctctcgtc gtgccgctgc caaagccggg
     5521 ccccctgcgg ccgaggcagc gacccccgag ccgcgcgagt ccgacaccgc tgaccggacc
     5581 gacgccgcgg gcgagatcgc gcctgacggc accgacgagc aggactctga gggcactgac
     5641 ggtggtcgcc gacgccggcg tcgcggtggc aagggtcgtg gccgaggccg gacttcaggg
     5701 gatgacgcca acgaggcggg cgactcgagc gaccgctcgg ccgggcctga tgacggcgac
     5761 cacgagactg ccggtgacgc tgacctcgac caggagccat ccgaccaggg cgacgatggt
     5821 gacgggcgtg acgacgcgga ctccgaaagc cagtcgacgc gtcgcaggcg ccggcgtcgt
     5881 cgcggtggcg caggcggcga tgagcaggac ccgcccggca ccgtgacgcg ggttcgtgag
     5941 gcccgccgcg acgagccgca gagcgtcaag ggctccacgc ggctggaggc caagaagcag
     6001 cgccgccgcg agggccgcga ggccgggcgt cgacgcaccg tgatcaccga ggcggagttc
     6061 ctggcacggc gcgagagcgt ggagcgcatc atggtggtgc gcgagcgcga cgggaagacc
     6121 cagatcggcg tgctcgagga cgacgtgctc gtggagcact acgtctcccg cgagagcaac
     6181 gtgtcgatgg caggcaacgt gtacctcggc cgcgtccaga acgtgctccc ctcgatggag
     6241 gcggccttcg tcgacatcgg caagggtcgc aacgccgtcc tgtacgccgg cgaggtcaac
     6301 tgggacgccg ccgggctgga gaacaaccag cccaagcgca tcgagaacgc gctgaagtcc
     6361 ggtgacgccg tgctggttca ggtcacgaag gacccgatcg gccacaaggg cgcccggctg
     6421 accagccaga tctccctgcc gggccggtac ctcgtctatg tgcccgaggg ctccatgacc
     6481 ggcatctctc gcaagctgcc ggacaccgag cgcggccgcc tcaagggcat cctcaaggag
     6541 gtcgtgcccg acagcgcggg cgtgatcgtg cgtacagccg cggagggggc cagcgaggac
     6601 gagctgcgcg ccgacgtcga gcggctcacc cgcacctggg agaagatcaa ggccaaggcc
     6661 gactcgaagt ccaaggccaa gggcggctcg cccgtcctcg tgcacggtga gcccgacctc
     6721 accgtgcggg tcatccgcga tgtgttcaac gaggacttca gcaagctcgt cgtggccggt
     6781 gaccaggcgt atgccgaggt cagcgagtac ctgggcgacg tcgcgcccga ccttgccgag
     6841 cggctggaga agtggacctc cgagcaggat ctcttcaccc accaccgggt tgacgagcag
     6901 atcgccaagg ccatggaccg caaggtctgg ctgccctctg gcggctcgct ggtgatcgac
     6961 cgcaccgagg ccatgaccgt ggtggacgtc aacactggca agttcgtcgg ttcgggcgga
     7021 aacctcgagg agacggtcac caagaacaac atcgaggcgg ccgaggagat cgtgcgacag
     7081 ctccggctgc gcgacatcgg cggcatcatc gtcatcg
//
LOCUS       DASYFY010000075         5280 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_110218, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000075 DASYFY010000000
VERSION     DASYFY010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5280
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110218"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VGN19_01355"
     CDS             complement(<1..337)
                     /locus_tag="VGN19_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEV7194561.1"
                     /translation="MEPVTSALPARRQQHDQLIVRGAREHNLKDVSVELPRDSLIVFT
                     GLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQK
                     STNRNPRSTV"
     gene            413..2239
                     /locus_tag="VGN19_01360"
     CDS             413..2239
                     /locus_tag="VGN19_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEV7194562.1"
                     /translation="MTTRATTPISEYAMLGDTETAALVSREGSIDWLCLPRFDSAACF
                     AALLGGPEHGRWLLGPAGPARSTRRYLGHSFVLETIHETEAGAVKVLDLMPLADGRSD
                     IVRSVEGLHGTVAMRHEWVVRFDYGKVRPWVTRGTGHRLDGDVIRAVAGPEMLVLRGT
                     RLPRAHDGRHRDEFDVRAGQTLTFSTTWFPSYEEVPPPLDIDSRISETIRLTDDWAAR
                     CDYEGPYREQVVRSLLTLRAMTHSRFGGIVAAPTTSLPEDFGGERNWDYRYCWLRDAS
                     LTLEALLASGYVSEARLWRNWLLRAVAGDPDDLQIMYAVNGSRRLPERTLDHLPGYAG
                     SAPVRIGNGAVDQRQSDVLGEVMIALDEARRRGLEVSVDAWAMQRALIGHLAEHWQEP
                     DNGLWEIRGPLRHFTHSRVMVWAAFDRAVRGVEDWGLPGPVERWRELRDAVRTEILTK
                     GYDPKRNTFTQHYDTTEVDASLLLIPLVGFLPPDDPRVVGTVAAIEQDLMHGGFLLRY
                     RTQSRVDGLSGDEHPFLACSWWLVSAYAVCGQVDKARALMDRLVAVFNDVGLVSEEYD
                     PVQGRMVGNFPQAFSHLAFIGAAHAIAQAERRGSAQAGRQLA"
     gene            2245..2952
                     /locus_tag="VGN19_01365"
     CDS             2245..2952
                     /locus_tag="VGN19_01365"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEV7194563.1"
                     /translation="MQPPLSLDTDRHLVAEHTTRLLETVSALDEVTAPTLCEGWTRAH
                     VVSHLARNAEAIGRLSEWALTGVAQEMYPGGTAGRDAAIEAGSTRALPLLLEDLRSTA
                     AELTPKLQALDGYLVSTEVELRGGLRVPARLLAFLRLREVVFHHVDLSAGFTFDDVGD
                     ELLTRFVDDAVNRLSRDRSAPAVELRADTGSQWTISGDDPSTVTGTLGGLMLWLARRD
                     PTRVHVDGPAPELPRGA"
     gene            complement(3032..3715)
                     /locus_tag="VGN19_01370"
     CDS             complement(3032..3715)
                     /locus_tag="VGN19_01370"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7194564.1"
                     /translation="MAATVRVLIVDDHEVFADALSVCLGDYPDLEVVGVATTAARGLA
                     LVTTVGYDVMVLDLALAGDDGLMLARDALQLDPTTGVVVATGMDADHRVVEAVQLGVR
                     GWVPKTVTAETLVDAIRGVGRGETRIPAQLLASALMSYTRGTSQSPSEASPGLADLTG
                     RELEVLSCLVEGMSRTEIGDMLHVSPNTVRTHVQSILHKLKVHSALAAVAIARGAGIT
                     RAGFSMEAS"
     gene            complement(3804..4454)
                     /locus_tag="VGN19_01375"
     CDS             complement(3804..4454)
                     /locus_tag="VGN19_01375"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7194565.1"
                     /translation="MRLVVCDDHRLLLEALGLALESCGHQVVALAVHPDDAVEAVGTY
                     HPDVCLLDVNFPDGTSVDAIQRIRATSPQTKIVMLSAEADHGIVARAIAEGASGYVGK
                     EKPIVEIVEMLERAVRGQLAVEPSLLQRALRPHKATDDPLWALQFLTDREWQVMRCIM
                     EGQTTEEMAESLGVQRSTARTHVQNLLTKLGVHSRLQAAALMSAHGSAESWPVHLR"
     gene            complement(4451..5083)
                     /locus_tag="VGN19_01380"
     CDS             complement(4451..5083)
                     /locus_tag="VGN19_01380"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7194566.1"
                     /translation="MAAVLEEYQRPVAGGEIDTIRALLHDLRQPLAAILLLSGADAGD
                     VARKMAGISGQARWLADLVETVLSEAAGDEVRCTDLVRLLDAAVSRAADTADCTIAVE
                     VVEAPEVWARPVALTRAVACVLDNAVRAAGPEGRVQVRVHRSDAGVHVTVSDNGPGLG
                     KVAGRTSLGLTTIRAMVAACHGSFDLHGHEGGGAVADICLAEARLRSVAS"
BASE COUNT          818 a         1867 c         1763 g          832 t
ORIGIN      
        1 cgacggtgga ccgcgggttg cggttggtcg acttctggtc gatcgagaca gccggcgaca
       61 gtccttcgat gaagtcgacg tccggcttgt ccatctggcc aaggaactga cgggcgtagg
      121 ccgacagcga ctcgacgtag cgccgctgcc cctcggcgaa gatggtgtcg aaggccagcg
      181 acgacttgcc tgaaccggac agtccggtga acacgatcag cgagtcacgc ggcagctcga
      241 ccgagacgtc cttcaagtta tgctcgcgcg cgcctcgcac gatgagctgg tcatgctgct
      301 ggcggcgtgc gggcagagct gaagtcacgg gctccatcgt aggtgggccc accgacaccg
      361 gcgtgtgcgc gtcctcagca gcgtcggtga gcccccggca tacgctcggg ccatgacgac
      421 gcgcgcgacg acgcccatct cggagtacgc catgctcggc gacaccgaga cggccgcctt
      481 ggtgagccgc gagggctcca tcgactggct ctgcctgccc cggttcgact ccgccgcctg
      541 cttcgcggcc ttgctcggcg gtcccgaaca cggtaggtgg ctgctgggtc ccgcggggcc
      601 ggcccgcagc accaggcggt acctcgggca ctccttcgtg ctcgagacga tccacgaaac
      661 ggaggccggc gcggtcaagg tcctggacct catgccgctc gcagacggac gctcggacat
      721 cgtgcgcagc gtcgagggac tgcacggcac cgtggccatg cgtcacgagt gggtggttcg
      781 gttcgactac ggcaaggttc gaccgtgggt gacccggggc accggccacc gcctcgacgg
      841 cgacgtgatc cgggcggtgg cggggccgga gatgctcgtc ctgcgcggca cccggctgcc
      901 gcgagcgcac gacgggcggc accgcgacga gttcgacgtc cgagccggcc agacgctcac
      961 gttctcgacg acctggttcc cgtcctacga ggaggtcccg ccgcccctcg acatcgactc
     1021 ccgcatcagc gagacgatcc ggctcacgga cgactgggcc gcccgatgcg actacgaggg
     1081 gccgtaccga gagcaggtgg tccgttccct gctcaccctg cgggcgatga cgcactcgcg
     1141 cttcggcggg atcgtggcgg cccccacgac cagccttccc gaggacttcg gcggcgagcg
     1201 gaactgggac taccggtact gctggctgcg cgacgcgtcc ctcaccctcg aggcgctcct
     1261 ggcgtccggc tatgtcagtg aggctcgcct gtggcgcaac tggctgctgc gcgccgtcgc
     1321 cggcgacccc gacgacctgc agatcatgta tgccgtcaac ggctcgcgac ggctgcccga
     1381 gcgcaccctc gaccacctcc ccgggtatgc cggatcggct cccgttcgca tcggcaacgg
     1441 cgccgtggac cagcgacagt ccgacgtgct cggcgaggtg atgatcgccc tggatgaggc
     1501 gcgccggcgg gggctcgagg tgtcggtgga tgcctgggcg atgcagcggg cgctgatagg
     1561 ccatctggcg gagcactggc aggagccgga caacggtctg tgggagatcc gcggtccgtt
     1621 gcgccacttc acccactcac gcgtgatggt gtgggccgct ttcgaccggg cggtccgtgg
     1681 agtcgaggac tggggtctgc ccgggccggt cgagcgctgg cgcgagctgc gggacgctgt
     1741 ccgcaccgag atcctcacca agggttacga cccgaagcga aacaccttca cccagcacta
     1801 cgacaccacc gaggtggacg cttcgctcct gttgatcccg ctggtcggct tcctgcctcc
     1861 cgacgacccc cgggtcgtcg ggaccgtggc cgccatcgag caggacctca tgcatggtgg
     1921 cttcctgctg cgctaccgca cgcagtcgcg ggtcgacggc ctcagcggcg acgagcatcc
     1981 cttcctcgcc tgttcatggt ggctggtgag tgcgtatgcc gtgtgcggcc aggtcgacaa
     2041 ggcccgcgcc ctcatggacc ggttggtggc cgtgttcaac gacgtgggcc tagtgtcaga
     2101 ggagtacgac ccggtgcagg ggcgcatggt cggcaacttc ccccaggcgt tctcgcatct
     2161 agccttcatc ggtgcggccc acgcgatcgc ccaggcagag aggcggggct ccgcgcaggc
     2221 cggtcggcag ctagcgtgac ccgtatgcag cctcctttgt cactggacac ggatcgccac
     2281 ctggtggcag agcacaccac ccgcctgctg gagacggtgt cggccctgga cgaggtcacc
     2341 gccccgacgc tgtgtgaggg ctggacccgc gcgcacgtgg tcagccatct cgcccgcaac
     2401 gccgaggcca tcggccgact ctccgaatgg gccctgacgg gggtcgctca ggagatgtat
     2461 ccggggggta ccgcagggcg cgatgccgcg atcgaggcag gctcgacacg ggccttgccc
     2521 ctgctcctgg aggacctccg gtccacggcg gccgagctga cccccaagct ccaggcactg
     2581 gacggttacc tggtctcgac cgaggtcgag ctccgagggg gacttcgggt tcccgcgcgg
     2641 ctgctggctt tcctgcgact tcgggaggtg gtgttccacc acgtcgacct gtcggcgggg
     2701 ttcaccttcg acgacgtcgg cgacgagctg ctcacccgct tcgtcgatga cgcggtgaac
     2761 cggctgagtc gggaccgttc cgctccagcg gtcgagctgc gggccgacac cggctcccag
     2821 tggaccattt cgggcgacga tccgtcgacg gtcacgggca ccctcggagg tctgatgctg
     2881 tggcttgcac gtcgcgatcc cacccgagtg cacgtcgacg gtccggctcc agagctcccc
     2941 cgcggcgcgt gaccgctcgc tgcgcgtgac cgctcgctgc gcgtgacagc accagggctc
     3001 ccacgcggga tctgatccag cgcttcgagc tctaggaggc ctccatgctg aatccggccc
     3061 gagtgattcc cgcgccgcgg gcaatggcca ccgcagccaa ggcgctgtgc accttcagct
     3121 tgtgcaagat gctttgaacg tgggttcgga cggtgttggg tgacacgtgc agcatgtcgc
     3181 cgatctcggt ccggctcatc ccctccacga ggcagctgag gacctccagc tcgcgccccg
     3241 tcaggtccgc gagaccgggc gaagcctccg acggcgactg cgaggttccc cgggtgtagg
     3301 acatcagcgc cgacgccaat agctgggccg gaatccgcgt ctcgccgcgt ccgactcccc
     3361 ggatggcatc gaccagcgtc tcagcagtga ccgtcttcgg aacccagcca cggacaccaa
     3421 gctggaccgc ctcgacgacg cggtgatcgg cgtccatccc ggtggccacg acgacgcccg
     3481 tggtcgggtc gagctgaagg gcgtcccggg ccagcatgag accatcatct ccggccaggg
     3541 ccaagtccag caccatgacg tcgtacccaa cggtcgtcac cagcgccaga ccgcgggccg
     3601 cagtggtggc gaccccgacg acctcgaggt ccgggtagtc ccccagacac acgctgagcg
     3661 cgtccgcgaa gacctcgtgg tcgtccacga tgagaacccg caccgtcgct gccatgggac
     3721 acagccttga cttcggagcc ttcctgtgga cccaactcag gtgggaggac gatctccgtc
     3781 atcggcgtga gagcccttcg gggctacctc aggtgcaccg gccaggactc ggcggaccca
     3841 tgcgccgaca tcagcgcggc ggcctggagt cgcgagtgca cccccagctt ggtgagcagg
     3901 ttctgcacgt gcgtccgtgc cgtgctgcgc tgcaccccca gtgactccgc catctcctcg
     3961 gtggtctggc cttccatgat gcaccgcatc acctgccact cgcggtccgt gaggaactgc
     4021 agcgcccaca gcgggtcgtc cgtcgcctta tgcggtcgca gtgcccgctg caggagcgac
     4081 ggctcgacgg ccagctgccc gcgcaccgca cgctcaagca tctcgacgat ctcgacgatc
     4141 ggcttctcct tgcccacata gccggaggct ccctcggcga tggctcgggc gacgattcca
     4201 tggtcggcct cggccgagag catgacgatc ttcgtctgcg gcgaggttgc ccggatccgc
     4261 tggatcgcgt ccaccgaggt gccatcggga aagttgacgt ccagcaggca gacgtcgggg
     4321 tggtaggtcc cgaccgcttc caccgcgtcg tccggatgca ccgccagcgc gacgacctgg
     4381 tgtccgcagg actccagggc tagccccagg gcctccagca ggagacggtg gtcgtcacag
     4441 acgacgagtc tcatgaggcc acggaccgaa gacgagcctc ggcgagacag atgtccgcga
     4501 cagcgccgcc accctcgtgg ccatgcaggt cgaacgaccc gtggcaggca gccaccatcg
     4561 ccctgatcgt ggtgaggccg agcgacgtgc gcccagccac cttgcccaga ccgggtccgt
     4621 tgtcggacac cgtgacgtgt acgccggcgt cactgcgatg gacgcgaacc tggacacgac
     4681 cctcaggccc cgctgcgcgg accgcgttgt ccagcacgca ggccaccgcg cgggtgaggg
     4741 ccaccggccg ggcccacacc tccggtgcct cgaccacctc gaccgcgatc gtacagtcgg
     4801 ccgtgtccgc ggcgcgtgac acggcggcgt ccaggagccg caccagatcg gtgcacctca
     4861 cctcgtcgcc tgccgcctcg ctcaggacgg tctcgaccag atcggccagc catcgcgcct
     4921 gcccggaaat tcccgccatc ttgcgagcga cgtcgccggc gtccgcccca gacaacaaga
     4981 ggatggccgc aagcggctgc ctcaggtcgt gaagaagcgc ccgtatcgtg tcgatctccc
     5041 caccagcgac tgggcgctgg tactcctcaa gaactgctgc catgtcaccc tcacaccccg
     5101 cggtcggcca gctacacccc ctgtgagcca gccggttccc gcgacccgtc aaacgtagga
     5161 ctccaaaaag agggccagca atagtcaaat gggactacgc gaatgcgctt atctggtgct
     5221 ttggttctca gagcgcccga gtacctgagg tggcgtgtga cgggttattg cgcgccaccc
//
LOCUS       DASYFY010000076         4191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_951048, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000076 DASYFY010000000
VERSION     DASYFY010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_951048"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VGN19_01385"
     CDS             complement(<1..788)
                     /locus_tag="VGN19_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7194567.1"
                     /translation="MDYDDIVIGAGHNGLTAAAYLARAGRRVLVLEASDHVGGAAVSA
                     QAFRGVDARLSRYSYLVSLLPRQVATDLDLDVRLIRRRFSSFTPVPGEPTSSLLVDHG
                     DPSATAAGFAALSGGAGEYAAWQEFYGRLHRLAQRVFPTVLEPLRTEADIAALVDDDE
                     LWSALVGRPLGEVLEKWFGDDTVRGIVATDALIGTFADLHGRDLRQNVCFLYHLIGGG
                     TGDWDVPVGGMGALTTALARAASAAGAEIRTNVRVTAVDPGGTVT"
     gene            complement(828..2225)
                     /locus_tag="VGN19_01390"
     CDS             complement(828..2225)
                     /locus_tag="VGN19_01390"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7194568.1"
                     /translation="MGGDAGQFDLATGREVLESASAVLSRLDEVVFEVPGAELGSLLG
                     LVDRVVAMGELARVTVTAEALERGEIGVRGAPLSPAQWVLAHAPSTRSGGAGAVVSLA
                     ADFAKLANAPVRAAVLSGRIGVRSAATVVSEADKLRPLLVEGAEAPVLEGLVAMAERH
                     GPRGCRLVRPRLLAQYGHDDVLQRDQDAAKRFISLSQPREAGSGIFEYALTLDPEGMC
                     ALEAAIGPMAAPKPSAGERDLRGSDRRRGDALVQLIRRAVASTEVGAGTSKAQLFVTM
                     DYARLGSMLAAATGGTATGGTATGGTAAGGTAGTGNAEGRRPLAAGEVVGGTQAGTLL
                     APETVRRLACDATLIPLVLGVDREILDWGRAKRLFTPAQTKRLWLRDGGCTYPGCDAP
                     PQWCDAHHLVHWADGGSTDLANAGLLCDRHHQLVHRRRLAGTLGPDPEDKIGWDLTLG
                     SYDDVRARGATEEPA"
     gene            2418..3299
                     /gene="panB"
                     /locus_tag="VGN19_01395"
     CDS             2418..3299
                     /gene="panB"
                     /locus_tag="VGN19_01395"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEV7194569.1"
                     /translation="MSEQPSTAPSSTSEVTAPYGTGAQAAPQRRVRIPHLQAMKERGQ
                     KWAMLTAYDMYSAEIFDEAGIPVLLVGDSAGNNVYGFETTVPVTVDHLVPLVRAVTSA
                     AKHAMVIADLPFGSYQASPQQALATATRFMKEGMAHAVKLEGGKLMVPEVELLVRAGI
                     PVMGHIGFTPQSEHVLGGYRVQGRGDSGDRLVEDAVALEKAGCFAVVMEMVPAPLAAR
                     VTEVLSIPTIGIGAGPECDAQVLVWQDMAGLRGGKAPRFVKKYADLRGALSAAATAYA
                     SDVASGAFPAPENSFLE"
     gene            3361..>4191
                     /gene="fgd"
                     /locus_tag="VGN19_01400"
     CDS             3361..>4191
                     /gene="fgd"
                     /locus_tag="VGN19_01400"
                     /EC_number="1.1.98.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013584967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0006007 - glucose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase
                     (coenzyme-F420)"
                     /protein_id="HEV7194570.1"
                     /translation="MTLRIGYKASAEQFGPRDLLDFGVLAEQVGLDSVFVSDHFQPWR
                     HHGGHAPFSLAWLAAVGERTEWVQIGTSVMTPTFRYNPAVVAQAFGTLGSLYPGRLVL
                     GIGTGEALNEVVVGSVADGEWPEFKERFGRLREAVSLMRALWTQDRVTFEGDYYRTVD
                     ATVYDRPDQPVPIYVAAGGPLVARYAGRSGDGFVCTSGKGAELYRDKLLPAVEEGLAK
                     SGRAGTDLDRMIEIKLSWDPDRTQAVANCRFWAPLSLTPEQKHGTSDPLELERLGDAL
                     S"
BASE COUNT          668 a         1558 c         1379 g          586 t
ORIGIN      
        1 gtcaccgtcc cgcccggatc gacagcggtg actcggacat tggtgcggat ctccgcgccc
       61 gccgccgagg cggcgcgcgc gagggctgta gtgagcgcgc ccattccgcc gacaggaacg
      121 tcccagtcac cggtgcctcc accgatcagg tggtacagga agcacacgtt ctggcgtagg
      181 tcgcggccgt gcaggtccgc gaaggtaccg atcagcgcgt cggtcgccac gatcccgcgc
      241 accgtgtcgt cgccgaacca cttctccaac acctcgccga gcgggcggcc cacgagggcc
      301 gaccagagtt cgtcgtcgtc gaccaacgcc gcgatgtccg cctcggtgcg gaggggctcg
      361 agaacggtcg gaaagacgcg ctgggcgagg cggtgcagcc gcccgtagaa ctcctgccac
      421 gcggcatact ctccggcccc tccggagagg gcggcgaagc cggcggcggt ggccgacggg
      481 tcgccgtgat cgacgagcag gctggaggtg ggttcgcccg gcaccggggt gaaggaggag
      541 aagcgacgcc ggatcagccg cacgtccagg tctagatccg tcgccacctg gcgcggcagc
      601 agggacacca ggtaggagta ccgcgacagc cgcgcgtcga cgccacggaa cgcctgggcc
      661 gacacggccg cgccacccac gtggtcggaa gcctccagga cgagcacacg gcgccccgct
      721 cgagcgaggt atgccgcggc ggtgagcccg ttgtgtccgg caccaatgac gatgtcgtcg
      781 tagtccacgc gggcactcta cggcccggcg ggtgccccgt gttgtcgtca tgcgggctcc
      841 tctgttgctc cgcgggcacg cacgtcgtcg taactgccca gggtcaggtc ccacccgatc
      901 ttgtcctccg gatccgggcc aagagtcccg gcgagtcgtc gtcggtgcac gagctggtgg
      961 tggcggtcgc acagcaggcc agcattggcc agatcagtcg agccgccgtc ggcccagtgc
     1021 accaggtggt gggcgtcgca ccattggggc ggcgcgtcac agccgggata ggtgcacccg
     1081 ccatcgcgaa gccacaaacg cttggtctgc gccggcgtga aaagcctctt ggccctgccc
     1141 cagtcgagaa tctcgcggtc cacgcccagg accagcggga tcaacgtggc gtcacacgcc
     1201 aagcgccgca ccgtctcggg cgccagcagc gtgccagcct gcgtgccccc gacgacctcc
     1261 cccgcggcca gcggccgccg gccctcagcg ttgccagtcc ctgcagtgcc gccagccgca
     1321 gtgccaccag tcgcagtgcc accagtcgca gtgccaccag tcgctgcggc gagcatgctg
     1381 cccaggcgcg catagtccat cgtgacgaag agctgtgcct tcgacgtccc tgcgcccacc
     1441 tccgtcgaag cgaccgcgcg ccggatcagc tgaaccaggg catcgccacg gcgacggtcg
     1501 ctccctcgca ggtcccgttc ccctgcggag ggcttgggcg ctgccatggg cccaatcgcc
     1561 gcctcaaggg cgcacatgcc ctcgggatcc agggtcaggg cgtactcgaa gatccccgac
     1621 ccggcctcgc gcggctgcga caggctgatg aaccgcttgg ccgcatcctg gtctcgctgg
     1681 agcacgtcgt cgtggccgta ctgcgccaac aaccgcggtc gcaccaggcg acagccccgc
     1741 ggcccatgcc gttcagccat ggcgaccaac ccctcgagga ccggcgcctc ggctccctcg
     1801 accagcaacg gccgcagctt gtcggcctcg gagaccaccg tcgccgccga tcggaccccg
     1861 atcctgccgg acaagacagc cgcccgcacc ggggcgttgg ccagcttggc gaagtccgcg
     1921 gccaacgaca ccaccgcccc ggcgcccccc gagcgtgtcg acggcgcgtg ggccaacacc
     1981 cactgcgccg ggctcaaggg ggcaccgcga acgccgatct cgccgcgctc gagcgcctcg
     2041 gccgtcacgg tcacccgggc cagctcgccc atcgccacca cccgatccac caggcccagc
     2101 aacgacccca gctcggcccc aggcacctcg aacacgacct cgtccagccg cgacagcacg
     2161 gcagaggccg actccagcac ctctcgcccg gtcgccagat cgaactggcc tgcatcccct
     2221 cccatgccca agaccgtacg gccagccacc gacaacgccc agatccatat gaaagtcgaa
     2281 ttccgttacc ccccagaaga attcaccgtc gccgtcaacc ccaactgtgc gactctgggg
     2341 acaagcagac atcctgcgaa accctgtgga acgtcgacac cccggcacgc cagaacgccg
     2401 cctcctagga tgccgacatg agcgagcagc cctccaccgc acccagctcc acctccgagg
     2461 tcacggcccc ctacggcacc ggcgcacagg cggcgcccca acgtcgggtc cgcatcccgc
     2521 acctccaggc catgaaggag cgcggtcaga agtgggccat gctcaccgcc tacgacatgt
     2581 actccgcaga gatcttcgac gaggccggga tcccggttct gctggtcggc gactcggccg
     2641 gcaacaacgt ctacgggttc gagaccacgg tgccggtcac ggtcgaccac ctcgtcccac
     2701 tggtgcgcgc cgtgacctcc gcggccaagc acgccatggt catcgccgac ctgccgttcg
     2761 gttcctacca ggccagcccg cagcaggctc tggccaccgc gacccggttc atgaaggagg
     2821 gcatggcgca cgcggtcaag ctcgagggcg gcaagctgat ggtgcccgag gtcgagttgc
     2881 tggtccgggc cggcattcct gtcatgggtc acatcggctt caccccgcag agcgagcacg
     2941 tcctgggcgg gtaccgggtc cagggacgcg gagacagcgg cgaccgcctc gtcgaggatg
     3001 ccgtcgccct ggagaaggcg gggtgtttcg cagtcgtcat ggagatggtc ccggctccct
     3061 tggccgctcg cgtcaccgaa gtgctgtcca tccccacgat cgggatcggg gcgggtccgg
     3121 agtgtgacgc gcaggtcctg gtctggcagg acatggccgg ccttcgaggt ggcaaggctc
     3181 cgcgcttcgt caagaagtac gccgacctgc gtggggccct ctcggccgca gccaccgcct
     3241 atgcctcgga cgtcgcgtcc ggcgccttcc cggccccgga gaactccttc ctcgagtagc
     3301 catacccatc cgtcccaggc gacggcgacg gcgacggcga cgcggcatac ggtggggctc
     3361 atgacgttgc gcatcggtta caaagcctcg gccgaacagt tcggcccccg cgacctgctc
     3421 gacttcgggg tgctcgccga gcaggtcgga ctcgacagcg tgttcgtctc cgaccacttc
     3481 cagccctggc ggcaccacgg cggacatgcc ccgttctcac tggcctggct ggccgcggtc
     3541 ggcgagcgca ccgaatgggt ccagatcggg acgtccgtga tgaccccgac cttccggtac
     3601 aacccagcgg tggtggcgca agccttcggc actttgggct cgctgtaccc gggtcgcctg
     3661 gtgctgggca tcgggaccgg cgaggccctc aacgaggtgg tcgtggggtc cgtcgctgac
     3721 ggcgagtggc ccgagttcaa ggaacgcttc gggcgcctgc gtgaggctgt cagcctgatg
     3781 cgcgcgctct ggacgcagga ccgggtgacc ttcgagggcg actactaccg caccgtcgac
     3841 gccaccgtgt acgacaggcc ggaccagccc gtgcccatct atgtcgccgc cggcggcccg
     3901 ctggtggcga ggtatgccgg ccggtccggc gacggcttcg tctgcacctc cggcaagggg
     3961 gccgagctgt accgggacaa gctgctcccc gccgtcgagg agggcctggc gaagtctggc
     4021 cgcgccggca ccgacctgga ccggatgatc gagatcaagc tgtcctggga ccccgaccgc
     4081 acccaggccg tggcgaactg caggttctgg gcaccgttgt cgctgacccc ggaacagaag
     4141 cacggcacct ccgaccccct ggagctggag cgcctcggcg acgccttgtc g
//
LOCUS       DASYFY010000077         1992 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1581911, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000077 DASYFY010000000
VERSION     DASYFY010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1581911"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..959)
                     /gene="xerD"
                     /locus_tag="VGN19_01405"
     CDS             complement(9..959)
                     /gene="xerD"
                     /locus_tag="VGN19_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEV7194571.1"
                     /translation="MRPTLPSVPASSAVERAVRGWLDHLEVERGVSDNTLKSYRRDLA
                     RYTAYLAGKGVEGPGEVTEAHVSDFLATLREGSPEHQPLAASSAARTLVAVRGFHRFL
                     ALEGEVETNPAGAVSPPKPAARLPKAISVDEVERLLAAASVGDTPASLRDRALLEVLY
                     GAGARISEAVGLDIDDIDRQEGVVRLFGKGSKERLVPLGSYAAEALGAYLVRGRPEMA
                     ARGKGSAAVFLNQRGSRLSRQSAWSVMRAAAERANLTGHLSPHTLRHSFATHLLDGGA
                     DVRVVQELLGHASVTTTQIYTLVTVQRLREVYAQSHPRAR"
     gene            958..1581
                     /locus_tag="VGN19_01410"
     CDS             958..1581
                     /locus_tag="VGN19_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013115737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194572.1"
                     /translation="MKLYADLPGRRTLQILTDVGMLAWVCAWAWVGRLVHDQTLGLAR
                     PGRQLQSAGSGFRDQMTSAGNAVRDVPLLGDRIAAPFRQASGAGTTITQAGTDLVEAV
                     TRLANLLGWVTAVVPILIVGLVWAALRGRFVRRASAAQRFIDSAADLDLFALRAMATQ
                     PMRRLAAVSDDPTGAWRRGDEATIRSLAMLELRDSGLHPPDVAAKSR"
     gene            complement(1640..>1992)
                     /locus_tag="VGN19_01415"
     CDS             complement(1640..>1992)
                     /locus_tag="VGN19_01415"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEV7194573.1"
                     /translation="YTATHDNDTVCGWWADLPEQRRERAREACAARGVQADIDGEPSW
                     ALIELAFGAPCGLAMTQAQDVLSLGSSARMNAPGTEGGWRWQLEAGALTPALAQRLRS
                     VTELTGRASRPFHG"
BASE COUNT          276 a          724 c          702 g          290 t
ORIGIN      
        1 ggggtcgctc agcgagcccg aggatgactc tgcgcgtaca cctcgcgaag ccgctgcacg
       61 gtgacgaggg tatagatctg cgtcgtggtc accgaggcat gccccagcag ctcctggacg
      121 acgcgcacat ccgccccgcc atccaaaagg tgggtggcga aggagtgccg cagggtgtgc
      181 ggtgagagat gtcccgtgag gtttgcgcgc tccgcggcgg cgcgcatcac cgaccaggcg
      241 ctctgtctgg acagccggct cccccgctgg ttcaggaaaa ccgctgcgct ccccttcccc
      301 ctggcggcca tctcgggtcg cccacgcacg agataggcac cgagcgcctc cgcggcatac
      361 gagcccagcg gcaccagtcg ctccttgctg cccttaccga acagccggac gacaccctcc
      421 tgccggtcga tgtcgtcgat gtccaggccg accgcctcgg agatgcgcgc ccccgcgccg
      481 tacagcacct ccagcaaggc ccggtcgcgt agcgaggcag gggtgtcccc cacactcgcc
      541 gcggcgagga gccgctcgac ctcatcgacg ctgatggcct tggggagcct ggctgccggc
      601 ttcggggggc tgaccgcacc ggcggggttg gtctcgacct ctccctccag cgccaggaag
      661 cggtggaagc cgcgcacggc gaccagggtg cgggccgccg aggaggcggc caggggctga
      721 tgctcagggc tgccctcacg caaggtcgcc aagaagtcgc tgacgtgcgc ctcggtcacc
      781 tcgcccggac cctcgactcc ctttccagcc aggtatgccg tgtaccgagc caggtcgcga
      841 cggtaggact tcagggtgtt gtcactgacc ccacgctcga cctcgagatg gtccagccat
      901 ccccggaccg cacgctctac cgcgctcgag gctggcacgg atgggagtgt aggccgcatg
      961 aagctctacg ccgatctgcc tggccgtcgg acgctgcaga tcctcacgga cgtcggcatg
     1021 ctggcgtggg tctgcgcgtg ggcctgggtc ggccggctcg tccacgacca gaccctcggc
     1081 ctagccagac cgggtcggca gctccagagt gccgggtcag ggttccggga ccagatgacc
     1141 tcggcgggca acgcggtgcg cgacgtgccg ctgctcggtg accggatcgc ggcgccgttc
     1201 cggcaggcca gcggcgcagg gaccaccatc acccaggccg ggaccgacct ggttgaggcc
     1261 gtgacccggc tggccaacct cctgggctgg gtgaccgctg tggtcccgat cctcatcgtc
     1321 ggactcgtct gggcggccct gcgcgggcgc ttcgtgcgta gggcgagcgc ggcgcagcgc
     1381 ttcatcgact ccgccgccga cctggacctc tttgcgctcc gcgccatggc gacccagccg
     1441 atgcgcaggc tcgctgcggt ctcggacgac cccacgggcg cctggcgtcg cggcgacgaa
     1501 gccaccattc gctcgctggc catgctggag cttcgcgact cggggctgca cccaccggac
     1561 gtcgccgcaa agtctcgctg accctccgcg cgccgtggac cgcggtcagc cgtgacccac
     1621 cgtgtgccgt agcccgcggt cagccgtgga atggccggct ggcgcggccg gtgagctcgg
     1681 tgaccgagcg cagccgctgg gccagcgcgg gggtcagggc tccggcctcc agctgccagc
     1741 gccagccgcc ctcggtgcct ggggcgttca tccgggccga ggagcccagc gacagcacat
     1801 cctgggcctg ggtcatggcg aggccacagg gagcgccgaa ggccagctcg atcaaggccc
     1861 aggacggctc gccatcgatg tccgcctgga ctccgcgggc ggcgcacgct tcccgagcgc
     1921 gctcgcggcg ctgctcgggg aggtcggccc accagccgca gaccgtgtcg ttgtcgtggg
     1981 tggcggtgta ga
//
LOCUS       DASYFY010000078         6884 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_267911, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000078 DASYFY010000000
VERSION     DASYFY010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6884
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267911"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VGN19_01420"
     CDS             <1..372
                     /locus_tag="VGN19_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018154967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194574.1"
                     /translation="EVLDAVPDGLDGLVEERGRSYSGGQRQRLALTRALLTDAPVVVL
                     VEPTSAVDAHTEARIAERLARHRRGRTTVVTTVSPLMLGRADEVILLEDGLAVARGTH
                     RALLENPAYRRIVIRGEEDDQ"
     gene            444..2186
                     /locus_tag="VGN19_01425"
     CDS             444..2186
                     /locus_tag="VGN19_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194575.1"
                     /translation="MTEHRRLFSQVLGLHALAAAAALAAPWLVGRLVDVVSGHAGGSR
                     VSAVDHLAVGLAIAVVAQTGLTWAARRLSFVLGETVFAQLREQFIGRAVNLPLSTVER
                     AGTGDLVARTTNDIEALSHVVRFGIPALFVAGVTVLMTVVAALFTSPLATLPILLGLP
                     FYWFSTRRYLRFATDGYLWERATYAELNGVVAETVDGARTVDALGLAEVRRGRYHDAL
                     RECYRAERYTLGLRLRWFPSVVLGYHVPTAGAVFWGGWLAINGHVTAGAATAVTLYIH
                     QLTGPLDEVLGWLDEIQVGATSLARVIGVGDVPPDRVATGARPDGSVLDVDRVRYSYR
                     PGRDVLRGVSLDLRPGERLAIVGPSGAGKSTLGRLMAGIDGPREGRIDVGGVPLVDLA
                     LADLRGEVALVTQEHHVFVGTLADNLLLARPTASRDELVAALEAVDAASWAALLPDGL
                     DTAVGSGGQVLTEAQSQQVALARLVLADPHTLVLDEATSLLDPGAARHLERSLAAVVA
                     GRTVVAIAHRLHTAHDADRVAVVEEGMISEIGTHAELVAAGGAYAALWASWRDEPVAS
                     LPSGQVPEIAPDLA"
     gene            2480..2683
                     /locus_tag="VGN19_01430"
     CDS             2480..2683
                     /locus_tag="VGN19_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010552105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEV7194576.1"
                     /translation="MAMTLRLSEEDERILAALAEAEGISRHEATLRAIREAAARHGHE
                     SQVRELSARARQRYAAVLDRLGE"
     gene            2680..3042
                     /locus_tag="VGN19_01435"
     CDS             2680..3042
                     /locus_tag="VGN19_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010552104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HEV7194577.1"
                     /translation="MTVLLTLEDLLTLVSDLAVGPVRDVGLLDSAAHRPGAVLYGTEA
                     YPSLDLKAAALLESLVGNHSLVDGNKRLGWLAVVVFYGLNGVELDAPEDPAYELVMSV
                     ARGTSRLEEVAQTLASWR"
     gene            complement(3101..4840)
                     /locus_tag="VGN19_01440"
     CDS             complement(3101..4840)
                     /locus_tag="VGN19_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEV7194578.1"
                     /translation="MSSTPAPAGRSGGSGTGADYDVVVIGSGFGGSVTALRLAEKGYR
                     VHVVESGRRFRDEDFAKTSWDVRNYSWAPKLKCFGVQRIHRLPDVVVLAGAGVGGGSL
                     NYANTLYVPPEPFFKDRQWADITDWQSELAPHYAMASTMLGVVTNPCQGIVEEVMRKA
                     ARDLGVEDTFRTTPTGVFYGMPGRRVPDPYFGGVGPERTGCTECGNCMVGCRVGAKNT
                     LVKNYLALAEGLGVTIEPLRTVVRLAPRRGGGYAVTHEATGSWFRHSRRTITADQVVV
                     AGGTWGTQKLLHAMRQTGVLPAISDRLGYLTRTNSEALNGVMMEKAKPGADLSRGVAI
                     TSSFHPDGDTHVENVRYGKGSNAMGVLATILVPGGRLPRPLQFLVEVVKHPTIFMRSL
                     SQYRWSERTIIGLVMQSRDNSLQVRGRSGRFGGAGLTSSQGHGEPNPTYIPAGQRAMQ
                     AVATRLSEATGLRAFSGSSVGEIVNIPMTAHFLGGVTIGSSPARGVIDPYQRVWGYPD
                     LHVVDGSAVSANLGVNPSLTITAQAERAMSLWPNKGEADPRPGQGEQYAVVEAVRPGH
                     PAVTSYTHDSAKV"
     gene            complement(4837..6429)
                     /locus_tag="VGN19_01445"
     CDS             complement(4837..6429)
                     /locus_tag="VGN19_01445"
                     /EC_number="1.2.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinic semialdehyde dehydrogenase"
                     /protein_id="HEV7194579.1"
                     /translation="MAPDLIADPETDPTATYAVDPALVRRLARRVVAGPRSAQFTSHT
                     PLTGAPLGTLPLSTTADVAVAVDAARAAQRSWARTPMEVRERIFLRYHDLVLERQVEL
                     LDIVQLESGKTRRQAFEEVADVAIVARHYARSAAAYLRPRRRAGLFPLLTQSVEHHHP
                     RGVVGIVSPWNYPLSLAITDAIPALMAGNAVVLRPDLQASLTALQAVQMLTEAGLPES
                     VLQVVLGDGPTIGQAVVDLTDYVCFTGSTATGRQVATSVASRLVGFSLELGGKNSMYI
                     ADDANLDKAVEGAVRACFSSAGQLCISIERLLVHQSVADEFTRRFVAAVKNLRLGADL
                     AYGVDMGSLVSATQLERVTAQVDDARSKGARVLTGGRARPDLGPYFYEPTVLEGVSAA
                     MDLRDDETFGPVVAIYRVQSDEEAVRFANDTDYGLNAAVYTRDVGRGRRIAAAIQAGT
                     VNINEGYAAAWGSVAAPMGGMKQSGVGRRHGSEGILKYTESQNITAQYLLPVAGPRGV
                     SEETYVRLLTGALKALKAAGRR"
     gene            complement(6539..>6884)
                     /locus_tag="VGN19_01450"
     CDS             complement(6539..>6884)
                     /locus_tag="VGN19_01450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194580.1"
                     /translation="GRGSSWNEIAWYGSVNKDLRELAGTTFASPYANHYCGNGDAVVC
                     QATLATSLADAVRRALTDEGVTSVQQLTYDKHQDDIRSTTAGLVGVRPIDWQNRPTFQ
                     QVVAFTGHRPRP"
BASE COUNT          984 a         2441 c         2385 g         1074 t
ORIGIN      
        1 gaggtgctcg acgccgtgcc cgacggcctg gacggcctgg tcgaggagcg cggtcggtcc
       61 tactccggcg ggcagcgcca acggctcgcc ctgacccgtg cgctgctcac cgacgcaccg
      121 gtcgtcgtgc tcgtcgagcc aaccagcgca gtcgacgccc acaccgaggc tcggatcgcc
      181 gaacgcctcg ccaggcaccg ccggggccgc accaccgtcg tgacaaccgt gagcccgctg
      241 atgctcgggc gggcggacga ggtcatcctc ctcgaggacg gcctcgccgt cgcccggggc
      301 acccaccgag cgctgctgga gaacccggca taccggcgca tcgtgatccg tggagaggag
      361 gacgaccagt gatcaccgac cctgcgcgcc gcaccctccc ggtcgcggac cgacgttcgg
      421 tatggcggca tacgcgcggc ctcatgaccg agcaccggcg cctgttctcc caggtgctgg
      481 ggctgcacgc cctcgcggcg gcggcggcgc tggctgcccc gtggctggtc gggcgtctcg
      541 ttgacgtggt gagcggccac gcagggggtt cccgggtcag cgccgtcgac cacctcgccg
      601 tcggactggc gatcgcggtg gtcgcccaga cggggctcac ctgggcggca cggagactgt
      661 cattcgtcct cggcgaaacc gtgttcgccc agctacgtga gcagttcatc ggtcgagcgg
      721 tcaacctccc gctgtccacc gtcgagcggg ccggcaccgg cgacctcgtc gcgcggacga
      781 ccaacgacat cgaggcgctc tcgcacgtcg tccgcttcgg catccccgcg ctgttcgtcg
      841 cgggggtgac cgtgctgatg accgtcgtcg cggccctgtt cacctcgccg ctcgcgaccc
      901 tgccgatcct gctcggcctg ccgttctact ggttctcgac ccgccgttac ctacgcttcg
      961 ccaccgacgg gtacctgtgg gagcgggcga cctatgccga gctcaacgga gtcgtcgcgg
     1021 agaccgtcga cggcgcccgc accgtcgatg ccctgggact cgccgaggtg cgcagaggcc
     1081 ggtaccacga cgccttgcgg gagtgctacc gagccgagcg atacaccttg gggctgcgcc
     1141 tgcgctggtt cccgtcggtg gtgctcggct accacgtgcc gaccgccggg gccgtgttct
     1201 ggggtgggtg gctggccatc aatggtcacg tcaccgccgg agccgcgacc gcggtgacgc
     1261 tctacatcca ccagctgacc ggcccgctcg acgaggtgct cggatggctc gacgagatcc
     1321 aggtcggtgc aacgtccctg gccagggtca tcggggtggg cgacgtgcct ccagaccgcg
     1381 tcgccaccgg cgcccggccc gatggctcgg tcctcgacgt cgacagggtg cggtactcct
     1441 atcgccctgg ccgggacgtt ctccgagggg tctcgctcga cctgcgcccg ggtgagcggc
     1501 tggccatcgt cggcccctca ggcgccggca agtcgacgct gggcaggctc atggctggca
     1561 tcgatggtcc ccgcgagggc cgcatcgacg tcggcggcgt cccgttggtc gacctcgcgc
     1621 tcgccgacct tcgcggcgag gtcgccctgg tcacccagga gcaccacgtg ttcgtcggca
     1681 ccctggccga caacctgctt ctggcccgcc caacggcctc gcgtgacgag cttgtggcgg
     1741 ccctcgaggc ggtggacgcc gcgtcatggg ccgcgctgct gcccgacggg ctcgacacgg
     1801 ccgtcggtag tggcggccag gtgctgaccg aggcgcagtc ccagcaggtc gcgctggcac
     1861 ggctggtgct ggcggacccg cacaccctgg tcctcgacga agccacctcg ttgctcgacc
     1921 cgggggcagc tcggcacctc gagcggtcgc tggcggctgt ggtcgccggc cgcacggtcg
     1981 tcgcgatcgc gcaccggctc cacaccgccc acgacgccga ccgggtggcg gtcgtcgagg
     2041 agggcatgat cagcgagatc ggcacccacg cggagctcgt ggcggccggc ggggcgtatg
     2101 ccgcgctgtg ggcctcctgg cgtgacgagc cggttgcgtc gctgccatcg ggccaagtcc
     2161 cggagattgc gccggacctc gcgtaactcc cggtcggtgg ggtcgttatc cgggtggtgc
     2221 ggctggagac ccacccccgg ctcgtctcca gccgcgccac ccgaaggcgg ctgttgctga
     2281 ggcgcagggg accccagcaa tagccgcctt cgcatgtccc cctctcgtct tccctcccct
     2341 cccgaccctc tctcccgacc tgcggccagc cggttgccac cgagagcccc ggaggcctgt
     2401 ttttgggcaa ctccccggcc gcagaggggg taggggttgt ggccgtgaca gtgtgatacc
     2461 acttcgatac catgggacca tggctatgac cctgcggctg tccgaagaag acgagcgcat
     2521 ccttgccgcg ctggccgagg ccgagggcat cagtcgccac gaggcgaccc tgcgagccat
     2581 tcgagaagcg gccgcgcggc acggtcacga gtcccaggtg agggagctgt cggcgcgagc
     2641 gcgacaacgc tacgcggcgg tgctcgaccg actcggcgag tgacggtcct gctgaccctg
     2701 gaggacctac tgactctggt gtcggacctc gcggtcggac cggtgcgcga cgtcggcctg
     2761 ttggactccg cggcccatcg tccaggagcg gtgttgtacg ggaccgaggc atatcccagc
     2821 ctggacctga aggcggcggc actgctggag tcgctggtcg gcaaccactc gctcgtcgac
     2881 ggtaacaagc gactcgggtg gttggccgtc gtggtgttct acggcctcaa cggggtcgag
     2941 ctggacgcgc ccgaggatcc tgcctatgag ctggtgatgt cagtggctcg gggcacctcg
     3001 aggctcgagg aggtcgcgca gaccctggca tcctggcgct aaggacgccc ccgtctcggg
     3061 ctggcccatc tgccaacagg aacgggaagg aaccccaggg tcagaccttg gcgctgtcgt
     3121 gggtgtagct ggtgaccgcc gggtggcccg gcctcacggc ctccaccacc gcatactgct
     3181 cgccctgccc tggccgcgga tcggcctcgc ccttgttggg ccacaacgac atcgcgcgct
     3241 cggcctgcgc ggtgatggtc agcgacgggt tcactccgag gttggccgag acggccgagc
     3301 catcgacaac atgcaggtcc ggataccccc acacccgctg gtacgggtcg atcacaccgc
     3361 gcgccggact ggagccgatc gtgacgccgc cgaggaagtg cgccgtcatg gggatgttga
     3421 cgatctcccc gacgctgctc cccgagaagg cgcgcagccc ggtggcctca ctcagtcggg
     3481 tggcgacggc ttgcatggcc cgctgccccg ccgggatata ggtcgggttc ggctcgccgt
     3541 gcccctggct ggacgtgagt ccggcgccac cgaagcgccc cgacctcccg cggacctgca
     3601 acgagttgtc gcggctctgc atgaccagtc cgatgatggt gcgttcgctc cagcggtact
     3661 gcgacagcga gcgcatgaag atcgtcgggt gcttgaccac ctcgacgagg aactgcagcg
     3721 gccgcggtag tcgccccccc ggcacaagga tcgtggccag tactcccatg gcgttggacc
     3781 ctttgccata gcgcacgttc tcaacgtggg tgtcgccgtc cgggtggaac gaggacgtga
     3841 tcgcgacgcc cctggacagg tcggcgcctg gcttggcctt ctccatcatc acgccgttca
     3901 gggcttcgga gttggtgcgc gtcaggtacc cgaggcggtc ggagatggct ggcagaacgc
     3961 ccgtctgacg catggcgtgc agcagcttct gggtgcccca ggtgcccccc gcgacgacca
     4021 cctggtccgc cgtgatggtt cgccgcgagt gccggaacca ggacccggtg gcctcgtggg
     4081 tcacggcata cccgcccccg cgtcgtgggg cgaggcgcac cacggtgcga agcggctcga
     4141 tggtgacccc caacccctcg gcgagggcga ggtagttctt taccagggtg ttcttcgctc
     4201 cgacccgaca gcccaccatg cagttgccac attccgtgca cccggtccgc tcagggccca
     4261 cgccaccgaa gtaggggtcg ggcacgcggc ggccaggcat cccgtagaac accccggtcg
     4321 gggtggtccg gaaggtgtcc tcgacgccga ggtctcgtgc cgccttgcgc atgacctcct
     4381 cgacgattcc ctggcagggg ttggtgacca ctccgagcat cgtcgaggcc atcgcgtagt
     4441 gcggagccag ctcggactgc cagtcggtga tgtcggccca ctgccggtcc ttgaagaacg
     4501 gctcgggcgg cacgtacaag gtgttggcgt agttcagcga accgccaccc acccccgcgc
     4561 cggccaggac cacgacatcg ggtagtcggt ggatccgttg caccccaaag catttcagct
     4621 tcggcgccca ggagtagttg cgcacgtccc aggacgtctt cgcgaagtcc tcgtcccgga
     4681 accggcgccc cgactcgacg acgtgtaccc ggtagccctt ctcggccagg cgcagcgcgg
     4741 tcaccgaccc gccgaacccc gagccgatca cgaccacgtc atagtcggcg ccagtgccgc
     4801 tgccgccgga gcgaccagcc ggcgcgggcg tggagctcac cggcgacccg cagccttcag
     4861 cgccttcagg gcacccgtca gcagccggac ataggtctcc tcggaaacgc cgcgcggccc
     4921 agcgaccggc aacaggtact gcgccgtgat gttctgcgac tcggtgtact tgaggatccc
     4981 ttctgagccg tgccggcggc cgacgccgga ctgcttcatg ccacccatcg gggcggcgac
     5041 actgccccag gccgcggcat acccctcgtt gatgttgacc gttcccgcct ggatggcggc
     5101 ggcgatgcgt cgcccacggc cgacgtcccg ggtatagacg gccgcgttca ggccgtagtc
     5161 ggtgtcgttg gcaaaccgca ccgcctcctc gtcgctctga acccggtaga tcgcgaccac
     5221 cggcccgaag gtctcgtcgt cgcgtaggtc catggcggca ctgaccccct cgagcacggt
     5281 cggctcgtag aagtacggcc cgaggtcggg gcgggcccga ccccccgtca gcactcgggc
     5341 acccttggag cgggcgtcgt cgacctgtgc ggtgacccgc tcgagctggg tcgccgaaac
     5401 gagtgacccc atgtccacgc cgtacgccag gtctgcgccg agccgtaggt tcttgaccgc
     5461 agccacgaac cgtcgggtga actcgtcagc caccgactgg tgcaccagca gccgctcgat
     5521 cgagatgcac agctgcccgg ccgaggagaa gcaggcgcga acggctccct ccaccgcctt
     5581 gtccaggttg gcatcgtcgg cgatgtacat cgagttcttg ccccccagct ccagggagaa
     5641 tcccaccaac cggctggcga ccgaggtagc gacctgccgt ccggtggcgg tcgacccggt
     5701 gaagcagacg tagtcggtga ggtcgaccac cgcctgtccg atggtggggc catcccccag
     5761 cacgacctgg agcacggact cgggcaggcc ggcctcggtg agcatctgca cggcctgaag
     5821 cgcggtcagc gacgcctgca gatcggggcg gaggacgacc gcgttgccgg ccatcagcgc
     5881 agggatggcg tcagtgatgg cgaggctgag cgggtagttc cagggactga cgatgccgac
     5941 caccccgcgc gggtggtggt gctcgacgct ctgggtgagc agcgggaaca gcccggcccg
     6001 acgccgggga cgcaggtatg ccgccgcgga gcgcgcgtag tgccgcgcca cgatcgcgac
     6061 gtccgccact tcctcgaaag cctgcctgcg cgtcttgccc gactcgagct ggacgatgtc
     6121 gagcagctcg acctgacgct cgaggacgag gtcgtggtac cgcaggaaga tccgctcgcg
     6181 cacttccatc ggggtccgcg cccaggaccg ctgggcggcc cgcgccgcgt ccaccgcgac
     6241 cgccacgtcg gcggtggtgg acagcggaag cgtgccaagt ggcgctccgg tgagcggggt
     6301 gtggctcgtg aactgagcac tgcgagggcc cgccaccacc cgcctcgcga gtcggcgcac
     6361 cagcgccggg tccacggcat acgtcgcggt ggggtcggtc tcggggtcgg cgatgaggtc
     6421 cggagccata ggggcagcgt aggtgggcaa cctcttcatt actagtagta agttacgtcg
     6481 aggcgtcccc cgagcggtga ggaagaccac acgggtcccc caatgcccgg ctggatcgtc
     6541 acggtcgggg ccgatgaccc gtgaaggcca cgacctgctg gaacgtcggc cggttctgcc
     6601 agtcgatggg ccgcaccccg accaaccctg ccgtcgtcga gcggatgtcg tcctggtgct
     6661 tgtcgtaggt cagctgctgc acgctggtca ccccctcgtc ggtcagcgcc cggcgcactg
     6721 cgtcggccag cgaggtggcg agggtggcct ggcagaccac cgcatcgccg ttgccgcagt
     6781 agtggttggc gtacggcgag gcgaacgtcg tcccggccag ctcgcggagg tccttgttga
     6841 cggacccgta ccacgcgatc tcgttccagc ttgagccccg gccc
//
LOCUS       DASYFY010000079         4986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_57698, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000079 DASYFY010000000
VERSION     DASYFY010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4986
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57698"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..753)
                     /locus_tag="VGN19_01455"
     CDS             complement(<1..753)
                     /locus_tag="VGN19_01455"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEV7194581.1"
                     /translation="MWLSTEEGSDVGPQVIFGLDRDGTCTLSIGSGLSALGFRSGQLV
                     GQNLFELYQGDPLGTEALTRALAGEVFRGERQYNGRRLALYFEPLLDDEGNVTGALGV
                     ATDVTEQRRAEQVARAARSHAQQLAELSAVLTLEVLDLPELLKIVVMAVTERTADVGV
                     LWTRAPGGDELAPTAQWDRLEFDSEVAELTAPAGPKPAAYRCPASVAEELAAPRSLDA
                     AATAASDPTAPEALLVALAGPRTVRSALRVPLR"
     gene            complement(868..952)
                     /locus_tag="VGN19_01460"
     tRNA            complement(868..952)
                     /locus_tag="VGN19_01460"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(916..918),aa:Ser,seq:tga)
     gene            complement(1350..2708)
                     /locus_tag="VGN19_01465"
     CDS             complement(1350..2708)
                     /locus_tag="VGN19_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEV7194582.1"
                     /translation="MPVAVLSAIEERLDHPTAKGLAHAVSATIRDGIVQPGDRLPAIR
                     TVATQLALSPTTVSAAWGLLARAGAVSTDGRRGTMVLGQRLPTVGRYQLALEHQNGFQ
                     LDLSTGVPDPELLPSLSAALASLTGTATTGSYLDDPVLPALSDLLLADWPYAVDELAV
                     VDGAMDALDLVIRSTVRFGDRVVVEDPCFPPLVDLLEAVGAQLVGVPLDEEGLALEPL
                     VRALAEPVAAVILQPRAQNPTGVTMTARRARAIARLLDRTSTLVVEDDSAAGLSPSPL
                     VSLGRWRPEHTAYVRSFSKSHGPDLRLAALSAPAEVMRSLTVRRQLGQGWSSRLLQRL
                     LVSLLTDEGTQASVTHACEVYAARRVALVDALQRKGIRVAGSEGINIWVPVHDETAAV
                     VRLASQGIGVAHGAPFRVGKAAPDGGHVRVTVGLAQDGFEELAEAIAAAARTSGRSAR
                     AR"
     gene            2768..4258
                     /locus_tag="VGN19_01470"
     CDS             2768..4258
                     /locus_tag="VGN19_01470"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015884658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEV7194583.1"
                     /translation="MTSRITHWIDGRPQDGTSGRSAPVYNPATGQVTAEVDLASTAEV
                     DTAVASATAAAAQWRHASLSKRAAVLFTFRELLHARAPELAAVITAEHGKVLSDAEGE
                     IARGLENVEFAAGVPNLLKGGFSEQAASGVDVFSIRQPLGVVAGITPFNFPAMVPLWM
                     CANAIACGNAFILKPSEKDPSAALFLARLWQEAGLPDGVFTVVHGDKVAVDAILEHPG
                     ISAVSFVGSTPIAKYIYERGTANGKRVQALGGAKNHALVLPDADIEMAADAVVSAAYG
                     AAGERCMALSVAVAVGEVAQPLVDAIAVRLPKLTVGDGAQPGTDMGPLITAAHRDKVA
                     EYIDAGESAGAAVVVDGRIGDLPSEGFFLGTTLLDHVTPQMTVYTDEIFGPVLSVVRV
                     DTYEEGLALINANQYANGTAIFTRDGGAARQFQYDVEVGMVGINVPIPVPVAYYSFGG
                     WKDSLFGDTHMYGPEGVSFYTRGKVVTQRWPDPATSSVDLGFPRTR"
     gene            4258..>4986
                     /locus_tag="VGN19_01475"
     CDS             4258..>4986
                     /locus_tag="VGN19_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEV7194584.1"
                     /translation="MAAEQAPALTPEAQVRADDRAHVFHSWSAQGLIDPLPIASAHGS
                     YFTDYEGRRYLDFSSQLVNVNIGYQHPRMVAAIQEQAARLTTISPAFANDARSEAARL
                     IAELAPGDLNRVFFTNGGAEATENALRMARLHTGRHKVMAAYRSYHGATAGAIAVTGD
                     PRRWASEPGMPGVVRYWGPYLYRSAFHAQTEQEESERALQHLRDLLMVEGPHTVAAII
                     LETVVGTNGILVPPPGYLEGVRAIC"
BASE COUNT          760 a         1746 c         1727 g          753 t
ORIGIN      
        1 acgcaagggg acgcgtaggg cgctgcgcac cgtgcgcggg ccggcgaggg cgacgagcag
       61 cgcctcgggc gcggtggggt cagatgctgc cgttgccgcg gcgtcaagcg accgtggcgc
      121 cgcgagctcc tcggcgaccg aggcagggca gcggtatgcc gccggcttcg gccccgccgg
      181 tgcggtcagc tcggcgacct cggagtcgaa ctcgagccgg tcccattgcg cggttggcgc
      241 gagctcgtcg ccgccgggcg ccctcgtcca cagcaccccc acatcggcgg tgcgctcggt
      301 gactgccatg accacgatct tgagcagctc gggcaggtcc aagacctcca gcgtgaggac
      361 cgccgacagc tccgccagct gctgcgcgtg cgacctggcg gcacgcgcta cctgttcggc
      421 acggcgctgc tcggtgacat cggtcgcgac tcccagggcg ccggtgacgt tgccctcgtc
      481 atcgaggagg ggctcgaagt acagggccag tcgccgcccg ttgtactggc gctcgccgcg
      541 gaagacctca ccggccaggg ctcgggtcag cgcctcggtg ccgagggggt cgccctggta
      601 cagctcgaag aggttctggc cgacgagctg gccggatcga aagccgagcg cggacagccc
      661 ggatccgatc gacagggtgc aggtgccgtc gcggtccagc ccgaagatga cctgcggccc
      721 gacgtcggag ccctcctcgg tcgaaagcca catgtccggt gtcatctcga tcccgctgcc
      781 atgttcgtca cgcgttcttc gtgctcgact agctggtgac cagctagtcg ccatagtagg
      841 catcgcgggg acagcggtca cccgatgcgg cgggggtggg attcgaaccc acggaggctt
      901 gcgcctcggt cgctttcaag gcgactccgt tcggccactg cggtaccccg ccaagctgtc
      961 gcctcaggcg gcagccgcag cccgcatcat gccgcagaca cggcggcggc gtccaagcgg
     1021 cggtccgatg actagcccct cggagccatc gcggtcagtg ggatctgacg taggcggtct
     1081 ccgcgatcgg gacgatctgc gcagccccta ctctcgctaa cttcgcgtat tgggagataa
     1141 acggccgtgg ggttgtgcac agacagggag ccaaggggtg ctacgccgag aatctggggg
     1201 agatcacgag caaatctgcg tgagttaacc gatccttgaa ggggagggcg cgcgacgacg
     1261 cgttgcgatc gggaatgaga acgtctgccc ttgggcagcg ggccgaaggc cgggcaaccc
     1321 tgcagcccgg ccttcgtgcc gcccgccact cagcgcgccc gggcgctgcg tccactggtg
     1381 cgggccgccg cggcgatcgc ctcggcaagc tcctcgaacc cgtcctgtgc cagccccacg
     1441 gtcaccctga catgcccgcc atcaggtgcc gccttgccca ctcggaaggg tgcaccgtgc
     1501 gccaccccga tgccttggct ggccagtcgg accaccgcag ccgtctcgtc gtggacgggc
     1561 acccagatgt tgatcccttc gctgccagcg acacgaatcc ccttgcgctg caacgcatcg
     1621 acgagggcga cgcgtcgcgc ggcatacacc tcgcatgcgt gcgtcacgct ggcctgcgtt
     1681 ccttcgtcgg tcagcaagct gaccaggagc cgctgcagga gcctgctgga ccacccttgg
     1741 cccagctgcc ggcggactgt cagggatcgc atcacctcgg ccggtgctga caacgcggcc
     1801 aggcgcaggt cgggtccgtg cgacttggag aacgaccgca cgtatgccgt gtgctcgggt
     1861 cgccacctgc ctaggctcac cagcggtgag ggcgagagcc cggcggcgga gtcgtcctcg
     1921 acgaccaggg tcgacgtcct gtcgaggagc cgtgcgatgg ccctggctcg gcgtgcggtc
     1981 atcgtgaccc cggtggggtt ctgcgctcga ggctggagga tgaccgccgc caccggctcg
     2041 gcgagggccc gcaccaacgg ctcgagagcc agcccttcct cgtccagcgg gactcccacc
     2101 agctgggcgc cgactgcctc caagagatcc accagcggcg ggaagcaggg gtcctcgacc
     2161 acgacccgat caccgaaacg cacggtgctg cggatgacga ggtccagggc atccatggca
     2221 ccgtcgacga cggcgagctc gtccacggca tacggccagt cggcgagcag caagtccgac
     2281 agggccggca ggaccgggtc gtcgaggtag gaccccgtgg tggccgttcc ggtcagcgat
     2341 gccagggccg cactcagact ggggagcagc tcggggtcgg gcacgcccgt ggacaggtcg
     2401 agctggaagc cgttctggtg ctcgagggcc agctggtagc gaccgaccgt cggcagacgc
     2461 tggccgagca ccatggtgcc gcggcgcccg tcggtgctca ccgcgccggc tcgcgcgagc
     2521 aggccccagg cagcgctcac cgtcgtcggc gacagggcga gctgggtggc caccgtgcgg
     2581 atggccggca ggcggtcgcc tggttgcacg atcccgtccc tgatggtggc ggacaccgca
     2641 tgggcgagcc ccttcgcggt gggatggtcg aggcgctcct cgatggcgct caacacagca
     2701 actggcattt ttgtaccata gcaataacga tattgtgtga ctagacctcg acccttacgg
     2761 tggggtcatg acctcccgca tcacgcactg gatcgacggc cgtccccagg acggcacttc
     2821 tggccgatcg gcccccgtct acaacccggc cacgggccag gtcacggccg aggtcgacct
     2881 cgcctccacc gccgaggtcg acaccgcggt ggccagcgcc acggcggctg ccgctcagtg
     2941 gcgacatgcc tccctgagca agcgcgcggc tgtcctgttc accttccgag agctgctgca
     3001 cgcccgcgcc ccagagctgg cggcggtcat caccgctgaa cacggcaagg tcctgtccga
     3061 cgcggagggt gagatcgccc gtgggctcga gaacgtcgag ttcgccgcgg gggtcccgaa
     3121 cctgctcaag ggtgggttca gcgagcaggc ggcgagcggg gtcgacgtct tcagcattcg
     3181 ccagcccctg ggggtggtgg ctggcatcac cccgttcaac ttcccggcga tggtgccgtt
     3241 gtggatgtgc gccaacgcca tcgcctgcgg caacgccttc atcctcaagc ccagcgagaa
     3301 ggacccctca gccgccctgt tcctggcgcg gctgtggcag gaggcagggc tgcccgacgg
     3361 ggtcttcacc gtcgtccatg gtgacaaggt cgctgtcgac gccatcctcg agcaccccgg
     3421 gatctccgcc gtgagcttcg tcggatccac cccgatcgcc aagtacatct acgagcgggg
     3481 caccgcgaac ggcaagcggg tgcaggcgct cggtggcgcc aagaaccacg ccctcgtgct
     3541 gcccgacgcc gacatcgaga tggctgctga cgcggtcgtg tcggcggctt atggagcggc
     3601 cggtgagcgc tgcatggcgc tgtccgtggc ggtggcggtg ggggaggtcg cacagcctct
     3661 ggtggatgcg atcgccgtgc gcctgcccaa gctgacggtg ggcgacggcg cccagcccgg
     3721 caccgacatg ggaccgttga tcaccgccgc gcaccgggac aaggtcgccg agtacatcga
     3781 cgctggcgag tccgcgggag ccgccgtggt cgtggacgga cggatcgggg acctgcccag
     3841 cgagggcttc ttcctcggga ccaccctgct cgaccacgtg accccgcaga tgaccgtgta
     3901 caccgacgag atcttcggac ccgtcctgtc cgtcgtgcgc gtcgacacct acgaggaggg
     3961 gctggccctg atcaacgcca accagtacgc caacggcacg gccatcttca cccgggacgg
     4021 cggggcggcc cgccagttcc agtacgacgt cgaggtgggc atggtcggca tcaacgtgcc
     4081 gatcccggtt cccgtggcct actactcgtt cggcggctgg aaggactcgt tgttcgggga
     4141 cacccacatg tacgggcccg agggcgtcag cttctacacg cgcggcaagg tcgtcacgca
     4201 acgctggccc gacccggcga cgtcgtcggt cgacctcggc ttcccgagga cccgctgatg
     4261 gccgccgagc aggcgcccgc gctgacgcct gaggcccagg tccgcgctga cgaccgggcg
     4321 cacgtcttcc actcctggtc ggcgcagggg ctcatcgacc cgctgcctat cgcgtccgcc
     4381 catggctcgt acttcaccga ctacgaaggg cgtcgttacc tcgacttctc cagccagctg
     4441 gtcaacgtca acatcggcta ccagcacccg cgcatggttg cggccatcca ggagcaggcg
     4501 gcccggctga ccaccatcag cccggccttc gccaacgacg cgcgctccga agcggcccgt
     4561 ctcatcgctg agctggcgcc aggcgatctc aaccgggtgt tcttcaccaa tggcggcgcc
     4621 gaggcgaccg agaacgccct gcggatggcc cggttgcaca ccggccgcca caaggtgatg
     4681 gctgcctatc gcagctatca cggtgccacc gccggggcga tcgcggtgac cggcgacccg
     4741 cgacgctggg cgtcggagcc cggtatgccg ggggtggtgc ggtactgggg cccctacctc
     4801 tatcggtcgg cgttccatgc gcagaccgag caggaggagt ccgagcgggc gctgcagcac
     4861 ctgcgcgacc tgctcatggt cgagggtccg cataccgtcg cggcgatcat cctcgagacg
     4921 gtcgtcggca ccaacggcat cctggtcccg ccgccgggct acctcgaggg cgtgcgcgcg
     4981 atctgc
//
LOCUS       DASYFY010000080         5140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_898846, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000080 DASYFY010000000
VERSION     DASYFY010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5140
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_898846"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..518)
                     /locus_tag="VGN19_01480"
     CDS             complement(<1..518)
                     /locus_tag="VGN19_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HEV7194585.1"
                     /translation="MADEAVTAEPASITPGGVFTRRGGSTPFEVHLDVFSGPFDLLLG
                     LISKHKLDITEIALAQVTDEFIVHIKAARDSQTEWDLSQASEFLLIAATLLDIKSSRL
                     LPQTGPQDEEDLALIEARDLLFARLLQYRAFKDIAFTFGERMATAGRMTPRQAGLEPQ
                     FAALLPELVMGIT"
     gene            complement(524..1408)
                     /locus_tag="VGN19_01485"
     CDS             complement(524..1408)
                     /locus_tag="VGN19_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7194586.1"
                     /translation="MSSVRLPGIDGVGAGQLGPTGRPMPDFPEPAALDSHGPARIIAM
                     CNQKGGVGKTTTTINLGAALAEVGRRVLLVDFDPQGALSVGLGVRANELDVTVYNLLV
                     ERGHDVREVIQATSTENLDVIPANIDLSAAEVQLVGEVAREQILARVLRPVMDDYDVI
                     LIDCQPSLGLLTVNALTAAHGVLIPLECEFFAMRGVALLVETIDKITDRLNPRLQVDG
                     ILATMYDSRTLHSKEVVRSVVDHFGDRVFHTVISRTVKFPDATLAAEPITTYAPTHAS
                     AAAYRQLARELIARGGAA"
     gene            complement(1558..2508)
                     /gene="xerD"
                     /locus_tag="VGN19_01490"
     CDS             complement(1558..2508)
                     /gene="xerD"
                     /locus_tag="VGN19_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEV7194587.1"
                     /translation="MRPTLPSVPASSAVERAVRGWLDHLEVERGVSDNTLKSYRRDLA
                     RYTAYLAGKGVAEPGEVTEAHVSDFLATLREGSPEHQPLAASSAARTLVAVRGFHRFL
                     AMEGEVETNPAGAVSPPKPAARLPKAISVDEVERLLAAATVGDTPASLRDRALLEVLY
                     GAGARISEAVGLDVDDIDTQEGVVRLFGKGSKERIVPLGSYAADALGAYLVRGRPTMA
                     AKGKGSAAVFLNQRGSRLSRQSAWSVMRAAAERANLTGHLSPHTLRHSFATHLLDGGA
                     DVRVVQELLGHASVTTTQIYTLVTVQRLREVYAQSHPRAR"
     gene            2507..3130
                     /locus_tag="VGN19_01495"
     CDS             2507..3130
                     /locus_tag="VGN19_01495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194588.1"
                     /translation="MKLYADLPGRRTLQILSDVGMLAWICGWAWVGRLVHDQTLGLAK
                     PGRQLQSAGSGFRDQMTSAGNAVRDVPLLGDRIAAPFRQASGAGTTISRAGTDLVEAV
                     TRLANLLGWVTALVPILIVGLVWVALRGRFARRASAAQRFIDSAADLDLFALRAMATQ
                     PMRRLAAVSDDPTGAWRRGDEVTIRSLAMLELRDSGLHLPEVAAASR"
     gene            complement(3155..4423)
                     /locus_tag="VGN19_01500"
     CDS             complement(3155..4423)
                     /locus_tag="VGN19_01500"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEV7194589.1"
                     /translation="MSDQATGSPVTERRASGVQLHITSLPGGRLGPAAREFVDWLVQA
                     GQSVWQVLPVTVPDQHRSPYKSPSAFAASAALLEHPDAPVSSQELDDFAQRQAFWVKS
                     WTDFGGDLADQVRFEREWSALRRYAAERGVRLMGDIPIYVAPQGADERAWPEFFRSDG
                     VSGVPPDAYAAQGQLWGNPLYRWDALEADGYRWWTERLRRTFDLFDLVRVDHFRGFSA
                     YWAVPASAATALEGRWEPGPGRAVFDAATAELGPLAVMAEDLGDIDEPVNELRRALGY
                     PGMAVLQFAFDPGYEVNTHDPEHYEVNQVVYTGTHDNDTVCGWWAALPEQRRERARAG
                     CAARGVQADVDSEPSWALIELAFAAPCGLAMTQAQDVLSLGSSARMNAPGTEGGWSWQ
                     LEPGALTSELAQRLRSVTELTGRASRPFHG"
     gene            complement(4420..>5140)
                     /locus_tag="VGN19_01505"
     CDS             complement(4420..>5140)
                     /locus_tag="VGN19_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEV7194590.1"
                     /translation="CTSEQADQCLALAAIRTEDLSFVDQVRALGVEHPTLDAGLEALA
                     AVIQSGLENAPGAMVADLKIARGLDYYTGTVYETQLVGYESWGSFCSGGRYDSLASDG
                     KTTYPGVGISIGVSRLLGLLLGQGLLKASRSTPACVLVAVNDEPSRAVSTRVATALRE
                     RGIPCEVAPKAAKFGRQIKYAERRGIPFVWFPAVGEHADQVKDIRSGDQVEAGATTWT
                     PPAQDLRPQVLSAQPSESGRP"
BASE COUNT          779 a         1781 c         1789 g          791 t
ORIGIN      
        1 gtgatcccca tgacgagctc gggtagcagc gcggcgaact gcggctcgag cccggcctgg
       61 cgaggggtca tcctgcctgc ggtggccatc cgctcgccga aggtgaacgc gatgtccttg
      121 aaggcgcggt actgcaggag ccgggcgaac aacaggtctc gagcctcgat cagcgcgagg
      181 tcctcctcgt cctgcgggcc ggtctgtggg agcagccggg acgacttgat gtcgagcagg
      241 gtcgccgcga tgagcaggaa ctccgacgcc tgagacaggt cccactcggt ctgggagtct
      301 cgggctgcct tgatgtgcac gatgaactcg tcggtgacct gcgccagcgc gatctcggtg
      361 atgtcgagct tgtgcttgct gatcagtccc agcagcaggt cgaacggccc ggagaagacg
      421 tcgagatgca cctcgaaggg cgtcgaaccc ccgcgccggg tgaagacgcc tcccggcgtg
      481 atcgaagctg gctcggccgt cacggcctcg tcggccaccg cggtcaggcc gcaccgccgc
      541 gggcgatgag ctcgcgagcg agctgccggt atgccgccgc cgaggcatgc gtcggggcgt
      601 aggtggtgat gggttcggca gcgagcgtcg cgtccgggaa cttcaccgtg cggctgatca
      661 ccgtgtggaa gacccggtcg ccgaaatggt cgacgacact gcgcacgacc tccttgctgt
      721 gcaaggtgcg cgagtcgtac atggtcgcga gaattccgtc gacctgaagt cgggggttca
      781 gccggtcggt gatcttgtcg atggtctcga cgagcagggc caccccacgc atcgcaaaga
      841 actcacactc gagcgggatg agcacgccgt gcgccgccgt cagggcgttc acggtgagca
      901 gccccagcga cggctggcag tcgatgagga tgacgtcgta gtcgtccatc accggacgca
      961 gcacgcgggc aaggatctgc tcgcgggcga cctcaccgac gagctggacc tccgccgcgg
     1021 acaggtcgat gttggcgggg atgacgtcga ggttctcggt gctcgtggcc tggatgacct
     1081 cgcgtacgtc gtggccgcgc tcgaccagca ggttgtagac ggtgacgtcg agctcgttcg
     1141 cccgcacgcc aagcccgacc gacagcgcac cctgggggtc gaagtcgacc agcagcacgc
     1201 gccgacccac ctcggcgagc gccgcaccca ggttgatggt cgtcgtggtc ttgccgacgc
     1261 cgcccttctg gttgcacatc gcgatgatgc gggccgggcc atggctgtcc agcgccgcag
     1321 gctcgggaaa gtccggcatg ggccgacctg taggccccag ctgcccggct ccgaccccat
     1381 cgatgcccgg cagccgcacc gacgacatcc gggcggacga ctcaggggcg gaggtctctt
     1441 gcgacggctg gaactgcgtc gtggtcacct cagggtccac aggcgtttca ctcccggtga
     1501 gattgcgatc gtcggtcagc ctcgcgctga tcggcacgac cttatcagcg gggtcgccta
     1561 gcgagcccga ggatggctct gcgcgtacac ctcgcggagc cgctgcacgg tgacgagggt
     1621 gtagatctgc gtggtggtca ccgaagcgtg ccccagcagc tcctggacga cgcgcacgtc
     1681 ggccccgcca tccagcagat gggtggcgaa ggaatgccga agcgtgtgcg gcgacaggtg
     1741 ccccgtgagg ttggctcgct ccgccgccgc gcgcatcacg ctccaagcgc tctgcctgga
     1801 caaccggctc ccccgctggt tgaggaaaac cgcggcgctc cccttccctt tggcggccat
     1861 cgtgggtcgc ccgcgcacga gataggcacc cagcgcgtcc gcggcatacg agcccagcgg
     1921 cactatgcgc tccttgctgc cctttccgaa cagccgcacg actccctcct gcgtgtcgat
     1981 gtcatcgaca tcgaggccga ccgcttcgga gatgcgggcc cccgcgccgt acagcacctc
     2041 gagcagggca cggtcgcgta gcgaggcagg ggtgtcgcca acagtcgcgg cggccaggag
     2101 ccgctcgacc tcatcgacgc tgatggcctt ggggagcctt gccgccggct tcggagggct
     2161 gaccgcgccc gcggggttgg tctcgacctc tccctccatc gccaggaaac ggtggaagcc
     2221 gcgcaccgcg acgagggtgc gggccgctga ggacgccgcc aggggttggt gctcagggct
     2281 gccctcgcgc aacgtcgcca agaagtcgct gacgtgcgcc tcggtcacct cgcccggctc
     2341 ggcgacgccc ttgccggcca ggtatgccgt gtaccgagcc aggtcgcgac ggtaggactt
     2401 cagcgtgttg tcactgacgc cacgctcgac ctcgagatgg tccagccatc cccggaccgc
     2461 acgctccacc gcgctcgagg ctggcacgga tgggagtgta ggccgcatga agctctacgc
     2521 agatctgcct ggccgtcgaa cgctgcagat cctctcggac gtcggcatgt tggcgtggat
     2581 ctgcgggtgg gcctgggtgg gcaggctcgt ccacgaccag acgctcggcc tcgccaaacc
     2641 tggtcggcag cttcagagtg ctgggtcagg gttccgggac cagatgacct ccgcgggcaa
     2701 cgcggtgcgc gacgtaccgc tgctcgggga ccggatcgcg gcgcccttcc gacaggccag
     2761 tggggccggc accacgatct cccgggccgg gaccgacctg gtggaggccg tgacccggtt
     2821 ggcgaacctc ctgggctggg ttaccgcttt ggtcccgatc ctcatcgtcg gactcgtctg
     2881 ggtggcactg cggggacgct tcgcgcgtcg ggcgagcgcc gctcaacggt tcatcgactc
     2941 cgcagccgac ctggacctct tcgcgcttcg ggctatggcc acccagccga tgcgcaggct
     3001 cgccgcggtt tcggacgatc ccaccggcgc ctggcgtcgc ggcgacgagg tcaccattcg
     3061 ctcgctggcc atgctggagc tgcgtgactc ggggctgcac ctgccggagg tcgccgcagc
     3121 gtctcgctga cccgcggtca gccgggaccc gcgatcagcc gtggaacggc cggctggcgc
     3181 gtccggtgag ctcggtgacc gaacgtagcc gttgggccag ctcggacgtc agggctcccg
     3241 gctccagctg ccagctccaa ccgccctcgg tgccgggggc gttcatccgc gccgaggagc
     3301 cgagcgacag cacgtcctgc gcctgggtca tggccaaccc gcagggggcg gcgaaggcca
     3361 gctcgatcaa ggcccaggac ggttcgctat cgacgtccgc ctggactcct cgggctgcgc
     3421 agcctgcccg agcacgctcg cggcgctgct cgggaagtgc ggcccaccag ccgcagacgg
     3481 tgtcgttgtc gtgcgtgccg gtgtagacga cctggttgac ctcgtaatgc tccgggtcgt
     3541 gggtgttcac ctcgtagccc gggtcgaagg cgaactgcag tacggccatc ccgggatagc
     3601 ccaacgcccg gcgcagctcg ttcacgggct cgtcgatgtc accgaggtcc tcggccatga
     3661 cagccaacgg gcccagctcg gcggtcgccg catcgaacac ggcccgtccc ggtcccggct
     3721 cccagcgacc ctcgagcgcg gtcgcggcgg aggcaggaac agcccagtac gccgagaatc
     3781 cgcggaaatg gtccacccgc accaggtcga aaaggtcaaa ggtccggcgc agcctctcgg
     3841 tccaccagcg gtagccatcg gcctccagcg cgtcccagcg gtacagcggg ttgccccaca
     3901 gctgaccctg ggcggcgtac gcgtccggag gtacgccgga gaccccgtcg ctgcggaaga
     3961 actcgggcca ggcgcgctcg tcggcgccct gcggggccac atagatgggg atgtcgccca
     4021 tcagcctgac cccgcgctcc gcggcatacc ggcgcagcgc ggaccactcg cgctcgaacc
     4081 ggacctggtc ggccaggtcc ccaccgaagt ccgtccagga cttgacccag aacgcctgcc
     4141 gttgggcgaa gtcgtcgagc tcctggctcg agacgggcgc gtcggggtgc tccagcaggg
     4201 ccgccgacgc ggcaaaggcg gatggcgact tgtaggggga acgatgctgg tcgggcacgg
     4261 tcaccggcag cacctgccag acggactggc ccgcctgtac cagccagtcg acgaactcac
     4321 gggccgcagg gccgagccgg ccgcccggca gcgacgtgat gtggagctgt accccgctgg
     4381 ccctgcgctc ggttaccggc gagccggttg cctggtcact catggtcgcc cactctcact
     4441 cggttgcgcc gacagcacct gcgggcgtag gtcttgcgcc ggcggggtcc acgtggtcgc
     4501 accggcctcc acctggtccc cggagcggat gtccttgacc tggtctgcgt gctcccctac
     4561 cgccggaaac cagacgaacg gtatgccgcg gcgctcggcg tacttgatct ggcgcccgaa
     4621 cttggccgcc ttgggcgcga cctcacacgg gatgccacgt tcgcgcagcg cggtggcgac
     4681 acgggtggac accgcgcggc tgggctcgtc gttcaccgcc accaggacac aggccggggt
     4741 cgagcggctg gccttcagca gaccctgacc cagcagcagg cccagcagtc gtgagacccc
     4801 gatggagatc ccgacgccgg ggtaggtcgt cttgccgtcg ctggcgaggg agtcgtagcg
     4861 accccccgag cagaaggatc cccacgactc gtagcccacg agctgggtct cgtagacggt
     4921 tccggtgtag tagtcgagac cgcgggcgat cttcaggtcg gcgaccatgg ctccgggcgc
     4981 gttttccaga cccgactgga tcaccgctgc caaggcctcc agcccggcat cgagcgtcgg
     5041 gtgctccacc cccagcgccc tgacctggtc gacgaaggag aggtcctcgg tgcgaatggc
     5101 cgccaaggcc agacactggt ctgcctgctc ggaggtacac
//
LOCUS       DASYFY010000081         2039 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_425705, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000081 DASYFY010000000
VERSION     DASYFY010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425705"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VGN19_01510"
     CDS             complement(<1..492)
                     /locus_tag="VGN19_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015937126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraslipin"
                     /protein_id="HEV7194591.1"
                     /translation="MSSVVATILLVVLVILVVVVISRSVRIVPQARAGIVERFGRYHR
                     TLHAGLNIVTPFVDRLLPLIDLREQVVSFPPQPVITGDNLVVGIDTVIYFQVTDARAA
                     TYEVANYITAVEQLTVTTLRNVVGGMELETALTSRDQINSELRKELDEATGKWGIRVG
                     RVEL"
     gene            complement(600..1385)
                     /locus_tag="VGN19_01515"
     CDS             complement(600..1385)
                     /locus_tag="VGN19_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194592.1"
                     /translation="MSDEVLRLRGVEVRRDAAVLLRNVDWTAHGDERWILIGPNGAGK
                     TTLLQVAATTLFATEGTVDVLGERLGEVDIFDLRPRIGLTSAAVAEQVPPGEKVINLV
                     LTASYAILGRWKEEYDSADVTRAVELLDAFGCAHLIRRKFSTLSEGERKRVQIARALM
                     PDPELLLLDEPGAGLDLGGREDLLRQLTKLARDPKAPMMVLVTHHVEEVPDGFTHAML
                     LRRGAVLAVGPIEEVFTARNLSRCFGVQLEIEQRQSRWTARAR"
     gene            complement(1478..>2039)
                     /locus_tag="VGN19_01520"
     CDS             complement(1478..>2039)
                     /locus_tag="VGN19_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012299438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7194593.1"
                     /translation="GIEVVGEAGDGATALALAAELSPDVVLLDLKLPGMDGIAVLGEL
                     RARDSAARVLVLTSATEPASASLAVRSGAAGVLYKDVDPDALVRAIRSVHDGHLLLAS
                     EAAGPLVRSAGTWGPGALGGGLDTLTRREREVLAELTKGRSNREIARALSVSEKTVKA
                     HVSSVLAKLGVQDRTQAALLAVRHQR"
BASE COUNT          302 a          734 c          681 g          322 t
ORIGIN      
        1 gagctccacc cggccgaccc gtatccccca ctttcccgtc gcctcgtcaa gctccttccg
       61 cagctcgctg ttgatctgat cccgtgaggt gagcgcggtc tccagctcca tgccgccgac
      121 cacgttccgc agcgtggtca cggtcagctg ctccacggcg gtgatgtagt tggccacctc
      181 gtaagtggcc gcccgggcgt cggttacctg gaagtagata accgtgtcga tgccgacgac
      241 gaggttgtcc ccggtgatca cgggctgcgg cgggaagctg accacctgct cgcgcaggtc
      301 gatgaggggg agcagccggt cgacgaacgg cgtcactatg ttcaggcccg cgtgcagggt
      361 ccggtgatac cggccgaacc gctcgacgat tcccgccctc gcctggggca cgatgcggac
      421 cgacctgctg atcaccacca ccacgaggat gacgaggacc acgagcagta tagtcgccac
      481 gacagagctc atgactgctt cactcctgcg cccggagcga ggttccctaa gcttccgggg
      541 tttccgggct tgtttgctac gttacagacc gcgagcgagt tgtgccagta cgcgacgatt
      601 cagcgcgccc gggcggtcca ccgcgactgg cgctgctcga tctccagctg gacgccgaaa
      661 caccgggaca ggttccgtgc ggtgaagacc tcctcgatcg gcccgaccgc gagcaccgcg
      721 ccccggcgca gcagcatcgc gtgggtgaag ccgtcgggca cctcttccac atggtgggtg
      781 accagcacca tcatcggcgc cttgggatcg cgggccagct tggtgagctg ccgcagcagg
      841 tcctcgcgcc cgcccaggtc gagccccgcg cccggctcgt cgaggagcag caactcgggg
      901 tcgggcatca gcgccctggc gatctgcacc cgcttgcgct cgccctcgga gagggtggag
      961 aacttgcgcc tgatcaggtg cgcgcagccg aacgcgtcga ggagctcgac cgcgcgggtg
     1021 acgtcggcgg agtcgtattc ctccttccac cggccgagga tggcgtagga ggcggtcagc
     1081 accaggttga tgaccttctc cccgggcggg acctgctccg cgaccgcggc gctggtcagc
     1141 ccgatcctcg gtcgcaggtc gaaaatgtcg acctcgccga gtcgctcgcc gagcacgtcg
     1201 actgtgccct cggtggcgaa cagcgtggtg gctgccacct ggagcaaggt ggtcttgccc
     1261 gctccgttcg ggccgatcag gatccaccgc tcatccccgt gcgccgtcca gtcgacgttg
     1321 cgcagcagga ccgccgcgtc ccgccggacc tcaacgccac gcagccgtag cacctcatcc
     1381 gacatcaggc cccctttctc cgcacgcgcc gccgagaccg aacctatgcc accgcacccc
     1441 tctcagccag ccggacaggc cggttcttcg atcaatgtca ccgctggtgc ctgacggcga
     1501 gcagcgcggc ctgggtgcgg tcctgcacgc ccagcttggc cagcaccgag ctcacgtgcg
     1561 ccttcaccgt cttctccgag acgctcaggg ctcgcgcgat ctcccggttg gaccggccct
     1621 tggtgagttc ggcgagtacc tcgcgctcgc ggcgggtgag cgtgtccagg ccgcccccga
     1681 gagctcctgg gccccaggtg cccgccgagc ggaccagggg gcccgccgcc tcggaggcga
     1741 gcagcaggtg gccgtcgtgc accgaacgta tcgcccgcac cagcgcgtcg ggatcgacgt
     1801 ctttgtagag gaccccggcc gcgcctgagc gaaccgccag gctcgccgac gcgggttcgg
     1861 tggcactggt gaggacgagt acccgggcgg cgctatcgcg ggctctcagc tcgcccagca
     1921 cggcgatgcc gtccatgccg ggcagcttga ggtcgaggag gacgacgtcc ggggagagtt
     1981 cggcggccag ggcgagcgcg gtggcgccgt cgccggcctc gccgaccacc tcgatcccg
//
LOCUS       DASYFY010000082         2532 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1267112, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000082 DASYFY010000000
VERSION     DASYFY010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1267112"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..971)
                     /locus_tag="VGN19_01525"
     CDS             complement(<1..971)
                     /locus_tag="VGN19_01525"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEV7194594.1"
                     /translation="MSAEITLHVAGSERSVSDQTTAAELFDGQRDVLVARVNGQLRDL
                     AHVLADGDVVEPVTAQEQDGLDVLRHSAAHVLAQAVQEVNPSAKLGIGPPVRDGFYYD
                     FDVEEPFTPEDLKALEKVMQRIVNEAQTFVRREISDGDAALELSAEPYKIELIGLKGG
                     SAAEAAEGAEVEVGGAQLTIYDNVRRDGTRAWGDLCRGPHVPTTKVLGNAFKLMRSSA
                     AYWRGSEKNPQLQRVYGTAWPTKDDLKAYLERLAEAEKRDHRKLGAELDLFSFPDEIG
                     SGLVVFHPKGGIIKREMEDYVRRRHIEEGFQYVGTPHISKDGLFKTSG"
     gene            complement(1122..2387)
                     /locus_tag="VGN19_01530"
     CDS             complement(1122..2387)
                     /locus_tag="VGN19_01530"
                     /inference="COORDINATES: protein motif:HMM:NF017856.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEV7194595.1"
                     /translation="MAKDEAGDAPATSATSTTSAQSAQSALARGLTNAKRALTTRGSE
                     RDAALLMLKAALATVIAWQFVVRVLHSPSPFYAPMAALLVVDRTMVRSLWASAQRVVA
                     VVVGMSTAWLVGSLVGVHWWSMLPVIYLALLIARWRRLGGHGIQVPSMVLLSLVTVGG
                     TNAQFTYRTILETVIGGVIGVLTNAVVLAPLHVHKPREQIQVLTRGLRDLLSDMSAGL
                     RDGWDADSARRWFEVSTELVALAPSIHEEIETGAESTRFNLRDNLQRLDVDWAGYAET
                     VEAVRRSQWQVSGIARTLVDAADDEHSQPTPSAPFLEEYAGVLDDVTEALGHFGRPDE
                     AEQGVVRDCLHHAAATLDRLGSRVRTTDLEDPNAWPAYGALLLDAQRLIRELEIHGGT
                     AVMPTDSGPIRRPTPEILRLWPGAEDEPA"
BASE COUNT          372 a          855 c          893 g          412 t
ORIGIN      
        1 cccgaggtct tgaacaggcc gtccttggag atgtgcgggg tcccgacgta ctggaagccc
       61 tcctcgatgt ggcgacggcg gacgtagtcc tccatctcgc gcttgatgat gccgcccttg
      121 gggtggaaca ccaccagccc ggagccgatc tcgtcaggga acgagaagag gtccagctcg
      181 gcgccgagct tgcggtggtc gcgcttctcg gcctcggcca gccgctcgag ataggccttg
      241 aggtcgtcct tggtcggcca cgcggtgccg tagacccgct gcagctgggg gttcttctca
      301 cttccccgcc agtaggcagc gctgctgcgc atgagcttga acgcgttgcc gagcaccttg
      361 gtggtgggca catggggacc gcggcacagg tcgccccacg cgcgcgtgcc gtcgcgacgg
      421 acgttgtcgt agatggtgag ctgggccccc ccgacctcta cttctgcgcc ttcggcagcc
      481 tcggcggcac tgcctccctt gaggccgatg agctcgatct tgtacggctc ggccgagagc
      541 tcgagcgcgg cgtcgccgtc gctgatctca cgccggacga aggtctgcgc ctcgttgacg
      601 atgcgctgca tgaccttctc gagggccttg aggtcctcag gggtgaacgg ctcctcgacg
      661 tcgaagtcgt agtagaagcc gtcgcggacc gggggcccga tgcccagctt ggcgctcggg
      721 ttgacctcct gcacggcctg cgcgagcacg tgggctgcgc tatgccgcaa cacgtccagg
      781 ccgtcctgct cctgggcggt gacgggctcg acgacgtcgc catcggccag cacgtgggcc
      841 aggtcgcgca gctggccgtt gacgcgtgcc accaggacgt cgcgctgacc gtcgaacagc
      901 tcagctgccg tggtctggtc cgacaccgat cgctcgcttc cggcgacgtg gagggtgatc
      961 tcggcagaca cggggtgcac tccttgggaa caacggcggt ggcgtatgcc gcgccagctg
     1021 gccggcgcgg cagaccgatg ctatcggccg ctcagggtgg ggtgcgcggc agttgtttgc
     1081 ccccgcttct ggcgctcgag ggtcgctcga gcggtggagg ctcaagcggg ctcgtcctcg
     1141 gccccgggcc agagccgaag gatctcgggg gtgggccgtc ggatcggccc gctgtcggtc
     1201 ggcatgactg cggtaccgcc gtggatctcc agctcgcgga tcagccgctg ggcatcgagg
     1261 agcagcgcac cgtaggcagg ccacgcgttc gggtcctcga ggtcggtcgt ccgcacccgg
     1321 ctgcccagcc ggtcgagggt cgctgcggcg tggtgcaggc agtcccgcac gacgccctgc
     1381 tcggcctcgt ctggccggcc gaagtggccg agcgcctcgg tgacgtcgtc gagaacgccg
     1441 gcgtactcct cgagaaaggg ggccgagggc gtgggctgcg agtgttcgtc gtcggcggcg
     1501 tcgaccaggg tgcgggcgat cccggagacc tgccactggc tgcgccggac ggcctcgacc
     1561 gtctcggcat acccggccca gtcgacgtcg aggcgctgaa ggttgtcgcg caggttgaac
     1621 cgggtgctct ccgcaccggt ctcgatctcc tcgtggatgc tcggggcgag ggccacgagc
     1681 tcggtactca cctcgaacca ccgccgggcg gagtcggcat cccatccgtc tcgcaaaccg
     1741 gcgctcatgt ccgacagcag gtcgcgcagg cccctcgtga ggacctgaat ctgctcccgc
     1801 ggcttgtgca cgtgtagcgg ggcgaggacc acggcgttgg tcagcacgcc aatgactccg
     1861 ccgatcacgg tttccaggat ggtgcgatag gtgaactgcg cgttcgtgcc accgacggtg
     1921 accaacgaca gcagcaccat cgacggaacc tggatgccgt ggcctccaag cctgcgccac
     1981 cgtgcgatga gcagcgcgag atagatgacc ggcaacatgc tccaccagtg cacgccgacc
     2041 agagatccaa ccagccaggc cgtgctcatg ccgaccacga cggccacgac ccgctgggcg
     2101 ctcgcccaca gcgaccgcac catggtgcgg tccaccacca gcagggccgc catcggagca
     2161 tagaacggcg acggactgtg cagcacccgc acgacgaact gccaggcgat gaccgtggcc
     2221 aaggccgcct tgagcatcag cagggcggcg tcgcgttcag agccgcgggt cgtcagcgct
     2281 cgcttggcgt tggtgagccc gcgggcgagc gctgactgag ctgactgcgc tgacgtcgtt
     2341 gaggtcgccg aggtggcggg ggcatcgcct gcctcgtctt tggccatctg gccacgttac
     2401 ggaacgcagc cccgcacctc aagtgacggg cactcaggtc gggctgctgc tacctgccct
     2461 ggaaggtcag cgcgaggtgg gtgcgagtgc ggtccttggc ggacctcaac ccaaccacca
     2521 ggggatccgc cg
//
LOCUS       DASYFY010000083         4815 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1634611, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000083 DASYFY010000000
VERSION     DASYFY010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4815
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1634611"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..288
                     /gene="purS"
                     /locus_tag="VGN19_01535"
     CDS             13..288
                     /gene="purS"
                     /locus_tag="VGN19_01535"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013347684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEV7194596.1"
                     /translation="MGHVVIDVMLKPEILDPQGQAVNGALPRLGFDRFTDVRQGKRFL
                     LTVEGEVTDEVLRDANEAAKTLLSNPVIEDVVSVRAEQDVNDVRAAE"
     gene            285..956
                     /gene="purQ"
                     /locus_tag="VGN19_01540"
     CDS             285..956
                     /gene="purQ"
                     /locus_tag="VGN19_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEV7194597.1"
                     /translation="MKIGVVTFPGSLDDRDAARAVRAVGAEAVSLWHGDAELHGVDAV
                     ILPGGFSYGDYLRCGAIARFAPVMDVLIPAARGGLPVLGICNGFQVLCESHLLPGALI
                     RNDHRKFNCVDQRLVVENASTAWTSDYEAGQEITVVLKNGEGGFVADDRTLDELEGEG
                     RVVFRYAGDNPNGSYRDIAGITNDRGTIVGLMPHPEHCVEAGYGPSVDGLPFFTSVLK
                     AVVKA"
     gene            953..3265
                     /gene="purL"
                     /locus_tag="VGN19_01545"
     CDS             953..3265
                     /gene="purL"
                     /locus_tag="VGN19_01545"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEV7194598.1"
                     /translation="MTVLDLSNPTAPSVDTVGLAAGSPEVDQPWAELGLKADEYERIR
                     EILDRRPTSAELAMYSVMWSEHCSYKSSKVHFSLWGENTTDEMREKLLVGIGENAGVV
                     DIGDGWAVTFKVESHNHPSYIEPYQGAATGVGGIVRDIMSMGARPIAIMDPLRFGNLN
                     HPDTQRVLPGVVAGVGGYGNCLGLPNIGGEVVFDDCYQGNPLVNALCIGAMRIEDIHL
                     AKASGVGNKVILFGAKTGGDGIGGVSILASETFAEGGSAKRPAVQVGDPFAEKVLIEC
                     CLDLYAAGVVDGIQDLGGAGLSCATSELASNGDGGMAVELDRVPLRDATLRPEEILMS
                     ESQERMMAVVEPGRLEEFLAITDKWDVEATVLGEVTDGEHLVITWHGEVIVDVPPRSV
                     AHEGPTYHRPLERPAYLDALQADAPDTLARPQDGAGLRADLLTLLASPNLCDKSWVTD
                     QYDRYVMGNTALAMPDDAGVVRVDEESGRGVAVSTDCNGRFAKLDPYAGAQLALAESY
                     RNVATAGATPLAVTDCLNFGSPEDPGVMWQFREAVRGIAEGCRTLGIPVTGGNVSFYN
                     QTGDVAIHPTPVIGVLGVMDDVARRTPSGWKTPGQVIYLLGTTRDELAGGEWANVVHG
                     HLGGLPPRVDLAAEQLLGEILVNASRDGLVDAAHDLSDGGLAIGLAEATLRHGVGARI
                     WLDAICERDGIDPFTALFSESTARVIVSVPRTEEVRFTDMCTARGQVHARIGVVDDET
                     DGLDLQGHFSVTVEDLREAHTRTLPAVFGR"
     gene            3451..3813
                     /locus_tag="VGN19_01550"
     CDS             3451..3813
                     /locus_tag="VGN19_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterol carrier family protein"
                     /protein_id="HEV7194599.1"
                     /translation="MPPRRRVPPAEGAAAVSQWRQSGSATERQVLALAVRYCLEELAT
                     LAPGRSVEVRVPPFGAVQCIEGTTHTRGTPPNVVETDAQTWLAVATGELAWEEAWQGG
                     ALRVSGHRADLAAYLPLV"
     gene            complement(3821..>4815)
                     /locus_tag="VGN19_01555"
     CDS             complement(3821..>4815)
                     /locus_tag="VGN19_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEV7194600.1"
                     /translation="ATAPALRWGVIAPGGIAHAFASALQARTTQRLQAVASRSLSRAE
                     AFAAEFGVATAYGSYAELVADPAVDVVYVASPHSEHREHALLAIEAGKPVLVEKAFTR
                     NAAEAAEVVLAARTAGVFAMEAMWTRFLPHLDVVRRCLEDELLGDVHTVLADHGQHLY
                     PDGPRRLRDPALAGGALLDLGIYPVSFAHLVLGGFASVSATGQLTELGVDAQDAIVVR
                     GQGGGMGVLSTTMAAKTPTTASISGTAARLELTGSFYGPRSVVTLVASDGTELGRFAS
                     QDPAHGLHFQAAEVARRIAAGERESPLMPLDETVAILAALDDVRGQVGVRYPGE"
BASE COUNT          744 a         1631 c         1704 g          736 t
ORIGIN      
        1 ggagacaccc gaatgggcca cgtcgtcatt gacgtcatgt tgaagccaga gatcctcgac
       61 cctcaggggc aggcggtgaa cggcgccctt ccccggttgg ggttcgaccg gttcacggat
      121 gtgaggcagg gcaagaggtt cctcctcacg gtcgagggcg aggtcactga cgaggtgctc
      181 cgggacgcca acgaggccgc gaagacgctg ttgagcaacc cggtgatcga ggatgttgtc
      241 tctgtccggg cggagcagga cgtcaatgac gtgagggcgg ccgagtgaag atcggggtcg
      301 tcaccttccc cggttccctg gacgaccgcg acgcggctcg agcggttcgg gctgtcgggg
      361 ctgaggccgt cagcctctgg cacggcgatg ccgagctgca cggggtcgac gccgtcatcc
      421 tgccgggcgg gttctcctat ggcgactacc tacggtgcgg tgccattgcc cgcttcgcac
      481 ccgtgatgga tgtgctgatc cccgcggctc gtggcggctt gccggtgttg ggcatctgca
      541 acggcttcca ggtgctctgc gagagccacc tgctcccagg agcgttgatc cgcaacgacc
      601 atcgcaagtt caactgcgtc gaccagcggc ttgtcgtcga gaacgcctcc accgcctgga
      661 cctcggacta cgaggccggt caggagatca ccgtcgtgct caagaacggc gagggtggct
      721 tcgtggccga cgaccgcacg ctcgacgagc tcgagggcga ggggagggtg gtgttcaggt
      781 atgccggtga caaccccaac ggctcgtacc gagacatcgc gggcatcacc aacgaccgcg
      841 gcaccatcgt cggcctcatg ccgcatccag agcactgcgt cgaggcgggg tacggcccct
      901 ccgtcgacgg cctcccgttc ttcacctccg tcctgaaggc agttgtcaaa gcatgaccgt
      961 gctggatttg tcgaacccga ccgccccgag cgtcgacacc gtcggactcg ccgccggatc
     1021 ccccgaggtc gaccagccct gggccgagct ggggctcaag gccgacgagt acgagcggat
     1081 ccgcgagatc ctggaccgcc gtccgacgag tgccgagctg gcgatgtact cggtcatgtg
     1141 gtccgagcac tgctcgtaca agtcgagcaa ggtgcacttc tcgctgtggg gtgagaacac
     1201 cacggacgag atgcgcgaga agctcctcgt cggcatcggt gagaacgctg gagtcgtcga
     1261 tatcggtgac ggctgggcgg tgaccttcaa ggtcgagtcg cacaaccacc cgtcgtacat
     1321 cgagccgtac cagggtgcgg cgaccggcgt cggcggcatc gtccgcgaca tcatgtcgat
     1381 gggcgcccgc cccatcgcga tcatggaccc cttgcggttc ggcaacctca accacccgga
     1441 cacccagcgg gtgctgcctg gcgtggtggc cggagtgggc ggctacggca actgcctggg
     1501 cctgcccaac atcggtgggg aggtcgtctt cgacgactgc taccagggga acccgctcgt
     1561 caacgccttg tgtatcggcg ccatgcgcat cgaagacatc cacctggcca aggcctccgg
     1621 ggttggcaac aaggtgatcc tgttcggtgc caagaccggt ggagacggca tcggcggggt
     1681 gtcgatcctc gcctccgaga cgttcgctga ggggggctcg gcaaagcggc ccgccgtgca
     1741 ggttggtgac ccgttcgccg agaaggtgct catcgagtgc tgtctggacc tgtatgccgc
     1801 tggcgtggtc gatggcatcc aggacctcgg tggtgctggg ctctcctgcg cgacaagcga
     1861 gctcgcctcc aacggcgacg gtggcatggc ggtcgagctg gaccgcgtgc cgctgcgtga
     1921 cgcgaccctg cggcctgagg agatcctcat gtcggagtcg caggaacgca tgatggcggt
     1981 cgtcgagcct ggacgcctcg aggagttcct ggcgatcacg gacaagtggg acgtcgaggc
     2041 caccgtgctc ggcgaagtga ccgacggtga gcacctggtc atcacctggc acggcgaggt
     2101 catcgtggac gtcccgccgc gctcggtggc ccacgagggc ccgacctatc accgcccgct
     2161 ggagcggccg gcatacctcg atgcgttgca agccgacgca cccgacacct tggcgcgccc
     2221 gcaggacggc gcgggcctgc gggccgacct gctgacgctg ctggcgtcac ccaacctgtg
     2281 cgacaagtcc tgggtcacgg accagtacga ccgttacgtc atgggcaaca ccgcgctggc
     2341 gatgcccgac gacgccgggg tggtccgggt ggacgaggag agcgggcgcg gggtggccgt
     2401 gagcacggac tgcaacgggc gcttcgcgaa gctcgacccg tatgccggcg cgcagctggc
     2461 gctcgcggag tcgtaccgca acgtggccac ggcaggcgcg acgccccttg ccgtgaccga
     2521 ctgtctcaac ttcggctcgc cggaggaccc cggtgtgatg tggcagttcc gcgaggcggt
     2581 gcgcggcatc gccgagggct gccggacctt ggggatcccg gtcaccggcg gcaacgtgtc
     2641 cttctacaac cagaccggcg acgtggcgat ccacccgacc ccggtgatcg gcgtgctggg
     2701 cgtcatggac gacgtcgcgc ggcggacccc ctcggggtgg aagacgcccg gccaggtcat
     2761 ctacctgctg gggaccactc gtgacgagct ggccgggggc gagtgggcca acgtcgtgca
     2821 cgggcacctc ggtggcctgc cgccgcgcgt cgacctcgca gccgagcagc tgctgggcga
     2881 gattctggtc aacgccagcc gcgacggcct ggtcgatgcc gctcacgacc tgtccgacgg
     2941 cgggttggcg atcgggctcg cggaggccac cctgcgacac ggcgtcggtg cccgcatctg
     3001 gctggacgcc atctgcgagc gcgacgggat cgacccgttc accgcccttt tcagcgagtc
     3061 cacggcccgg gtcatcgtga gcgtgccgcg caccgaagag gtgcggttca ccgacatgtg
     3121 caccgcacgc ggccaggtcc atgcgcggat cggcgtggtg gacgacgaga cggacggcct
     3181 ggacctccag ggtcacttct ccgtgacggt ggaggacctg cgggaggcgc acacgcgcac
     3241 ccttcccgcc gtcttcggtc gctagccgct ccgagcgtgt cgaacggccc ggtcgcgcta
     3301 ccccctgcgc ggccgggccg ttcgtcccct ggtttcccca agacagacag tagaaccgcc
     3361 cccagtggcc gtacatgggt agaactaccc attttcgaaa tggcccgcac gggccacggt
     3421 gtggatagtc cctcatggga cgatttgggt atgccgcccc gccgacgtgt tccgcccgcc
     3481 gagggtgctg ccgcggtgag ccagtggcgc cagtcgggtt ccgcgacgga gcgccaggtc
     3541 ctcgcactgg ccgtccgcta ctgcctggag gagctggcca ccctggcccc cgggcgcagc
     3601 gtcgaggtgc gagtgccacc gttcggggcg gtccagtgca tcgaaggcac gacccacacg
     3661 agggggacgc cgcccaacgt cgtcgagacc gacgcccaga cctggctagc cgtggccacc
     3721 ggtgagctgg cctgggagga ggcctggcag ggcggcgcgc tgcgggtgag tgggcaccga
     3781 gccgacctcg cggcctacct gccgctggtc tgaccaccgc tcactcgccg gggtaccgca
     3841 ccccgacctg tccgcgcacg tcgtcgagcg ccgccaggat ggccacggtc tcgtcgaggg
     3901 gcatgagcgg ggactcccgc tcgcccgccg cgatccggcg ggccacttcg gcggcctgaa
     3961 agtgcaggcc atgcgccggg tcctgactgg cgaaccgacc gagctccgtg ccgtcagagg
     4021 ccacgagcgt caccaccgac cgtgggccat agaaggatcc ggtcagctcc agtcgagcag
     4081 ccgtaccgct gatcgaggcg gtggtcgggg tcttggcggc catggtcgtg ctcagcactc
     4141 ccatgccgcc gccctggccg cgcaccacga tggcgtcctg cgcgtcgacg ccgagctcgg
     4201 tgagctggcc ggtggcgctg acgctggcga atccgcccag gaccaggtgg gcgaacgaca
     4261 cgggatagat gccgaggtcg agcagtgccc caccggccag ggctgggtcc ctcaggcgcc
     4321 gtggtccgtc cgggtagagg tgctggccat ggtcagccag caccgtgtgc acgtcgccca
     4381 gcagctcgtc ctccaggcac cgccggacca cgtcgaggtg aggcaggaag cgagtccaca
     4441 tcgcctccat ggcgaacacc cccgcggtgc gggcggcgag gacgacctcg gctgcttcag
     4501 ccgcgttgcg ggtgaacgcc ttctcgacca ggacgggctt gcccgcctcg atcgccagca
     4561 gggcgtgctc gcggtgctct gagtgcggtg aggcgacata gaccacatcc accgccgggt
     4621 cggcgaccaa ctcggcatag gacccgtatg ccgtggcgac cccgaactct gccgcgaagg
     4681 cctccgcccg actgagactg cgtgaagcca cggcctggag ccgctgggtg gtccgggcct
     4741 gcaacgccga ggcgaacgcg tgcgcgatcc ctccgggcgc gatcactccc caacgcaggg
     4801 cgggagcggt agcgg
//
LOCUS       DASYFY010000084         2366 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_320551, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000084 DASYFY010000000
VERSION     DASYFY010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320551"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..611)
                     /locus_tag="VGN19_01560"
     CDS             complement(<1..611)
                     /locus_tag="VGN19_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HEV7194601.1"
                     /translation="MPGFRVGHATLREPGWLTGVTVVLAPPEGAVGGVDVRGGAPGTR
                     ETDLLDPRNLIDRVNAVVLSGGSAFGLASVDGVVQALYAEGLGWPVGGPGEVVPIVPA
                     AVLFDAGRGGDFTHVPTAADGRAAAESAHGGAVEQGSVGAGTGARAGGLKGGLGSASV
                     VLEGGITVAALVAVNSFGDPCDVTTGELLARRAALDGEFGELG"
     gene            complement(692..1057)
                     /locus_tag="VGN19_01565"
     CDS             complement(692..1057)
                     /locus_tag="VGN19_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011693497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194602.1"
                     /translation="MTLQVGSIVLTVADVPTAMAFWAAALDLEAREEPEPDWVVLRPR
                     SGQGPNLSLSLGESRPTYFPHVHLDLYTSDQVAEVERLLGLGARRVKDWPYPLGEHDF
                     VVLEDPDGNRFCIVDTGGA"
     gene            complement(1054..1497)
                     /locus_tag="VGN19_01570"
     CDS             complement(1054..1497)
                     /locus_tag="VGN19_01570"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7194603.1"
                     /translation="MRIREAGPQEALVVAALTLQCARDRGGVSEPGFLDRHAKAWLEQ
                     RSSHPAWIAESGAQHAGLLQAAVLDDLPWPGHQGERGELVVQTLFVAREHRGHAIGER
                     LLGAAVAWSRDSGLSAVSLSGRSHTRPMLERVGFAVVDDWFRVGL"
     gene            complement(1604..1897)
                     /locus_tag="VGN19_01575"
     CDS             complement(1604..1897)
                     /locus_tag="VGN19_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012879691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3263 domain-containing protein"
                     /protein_id="HEV7194604.1"
                     /translation="MNVAHEQEHVDAPAGSLTERDREIIAFERQWWKYAGAKEQAIRE
                     LFDMSATRYYQVLNTLIDSPAALEADPMLVKRLRRLRASRQRARSARRLGIQL"
     gene            complement(2060..>2366)
                     /locus_tag="VGN19_01580"
     CDS             complement(2060..>2366)
                     /locus_tag="VGN19_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEV7194605.1"
                     /translation="HGTDAYSAAVERTLAVTRFTADEIGRRDYLELVREPDLSVVVFR
                     RLGWTAGQYQEWSDRLLSDQFAFVVPTSHAGETLTRFAIVNPRTSEDDIVAILDTMA"
BASE COUNT          381 a          857 c          779 g          349 t
ORIGIN      
        1 atccccagct cgccgaactc accatcgagg gctgcccgtc tggccagcag ctctcccgtg
       61 gtcacatcgc aggggtctcc gaacgagttc accgcgacga gggccgcgac ggtgatgccg
      121 ccctcgagga ccacgctcgc cgagccgagt cctcccttga gaccgcccgc ccgggcaccc
      181 gtgccggctc cgacggagcc ctgttccact gcgccaccat gcgcggactc ggccgcggcc
      241 cggccgtcgg cagccgtggg gacatgcgtg aagtcgcccc ctcgtcccgc gtcgaagagc
      301 acggccgccg gcacgatcgg gacgacctcg ccgggcccac cgaccggcca gccaagcccc
      361 tcggcataca gggcctgcac cacgccatcc actgaggcga gcccgaaggc gctcccgccg
      421 ctgagcacga cggcgttgac gcggtcgatg aggttgcgtg ggtcgaggag gtccgtctcg
      481 cgcgttccgg gcgccccacc tcggacatcg acgccgccta cggcgccctc cggcggcgcg
      541 aggacgaccg tcaccccggt gagccagccc ggttcacgaa gcgtggcgtg cccgacccgg
      601 aagcccggca catccgtcag tgagttcgtc ggtcccggat gtcccgcgcc tcccgggtct
      661 cccgggcctc gcgggcttcc cgaagccacg gttacgcgcc gcccgtgtcg acaatgcaga
      721 agcggttgcc gtcggggtct tcgaggacga cgaagtcgtg ctcgcccaac gggtacggcc
      781 agtccttgac ccggcgcgcc ccgagaccga ggagacgttc cacctcagcg acctggtcgc
      841 tggtgtacag gtcgagatgc acgtgcggga agtacgtggg ccgcgactcg cccagggaca
      901 gcgacaggtt cggcccctgt ccgctacggg gtcgcaggac gacccagtcc ggctccggtt
      961 cctcgcgggc ctcaagatcc agcgcggcag cccaaaaggc catggccgtc ggaacgtccg
     1021 cgacggtgag cacgatggac ccgacctgca gggtcatagc ccgacccgga accagtcgtc
     1081 gaccacggcg aaaccgacgc gctcgagcat cgggcgggtg tgagaacgcc ccgagaggga
     1141 gactgcggac agcccggagt cacgcgacca ggccaccgcg gccccaagca gccgttcccc
     1201 gatggcgtgt ccccggtgct cgcgagctac gaacagggtc tgcacgacga gctcgccccg
     1261 ctctccctga tgtcctggcc atggcaggtc gtccagcacg gccgcctgaa ggagtccggc
     1321 gtgctgggcg cctgactcgg cgatccaggc agggtgggat gatcgctgct cgagccacgc
     1381 cttcgcatgt cggtcgagga accccggttc gctcacaccg ccgcggtcac gagcgcactg
     1441 cagggtcagg gccgccacca cgagcgcctc ctgtgggcca gcctctctga tgcgcatctc
     1501 ggccacgccc gaagtcaagc acgtcagcgc cttgcgcgtc gtggcaagca caacgcccgt
     1561 ccagtcagta ctggacgggc gttggtgacc tgtggggctg cggctagagc tggatgccca
     1621 gccggcgagc gctgcgggcg cgctgacgcg acgcccgaag gcggcgcagt cgcttcacca
     1681 gcatggggtc ggcctcgagg gccgcggggg agtcgatgag cgtgttgagc acctggtagt
     1741 agcgagtggc gctcatgtcg aacagctcgc ggatcgcctg ttccttggcc cccgcgtact
     1801 tccaccattg ccgctcgaag gcgatgatct cgcggtcgcg ctcggtcagc gacccagcgg
     1861 gcgcgtcaac gtgctcctgc tcgtgtgcga cgttcactct cgactctcgt tcctcggtca
     1921 ggcctggtgg tagccctcac tatagggacc gaatcacacc attgtcattc ggccgaactc
     1981 ccgagatctg tggagtacca cccgatattc gccttggcga acccacccgt cacatcagcc
     2041 ccaaagggcc gcaacagcct caggccatag tgtcgagaat ggcgacgatg tcatcctctg
     2101 aggtcctcgg attcacgatg gcgaaccgcg tgagcgtctc ccccgcgtgg gaggtcggga
     2161 ccacgaaggc gaactggtcc gacagcagac ggtccgacca ttcctgatac tgcccagccg
     2221 tccagcccag cctcctgaag acgaccacgg acaggtctgg ctcgcggacc agctccaggt
     2281 agtcgcgccg gccaatctcg tcggccgtga accgcgtgac ggccagggtg cgctcaacgg
     2341 cagcgctgta ggcatcggtt ccatgc
//
LOCUS       DASYFY010000085         2003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_320672, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000085 DASYFY010000000
VERSION     DASYFY010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320672"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..>2003
                     /locus_tag="VGN19_01585"
     CDS             163..>2003
                     /locus_tag="VGN19_01585"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEV7194606.1"
                     /translation="MWIKGSWAHLEVLPFTAVPIAEIRAPEFIDTIEDLTLDQQGEYV
                     ENLAERLSPADDDAPAVCHLDSGVARTHLLLEGSLAPADLHTVVGTSGFDRDGHGTKM
                     AGVALLGDLDQHLVGSHTVALRHRLESVRILPTLAEKEHDPVTYGDITAQAVSLPEIT
                     STRPRVYCMPVSTNSDTPNNPGQPTLWSATVDALAVGASVVRTGDELQLLSAPDPEAA
                     RLLLVSAGNVDAFVTAHLDESDSSAVRDPGQAWNALTVGAHTELTTAPTDPAYTGWTT
                     LAPSGELSPHSRTSLLYGTRPWPIKPDIVMEGGNVLHDGSSLFEPSHAAVSLRTTGHT
                     NNQALTSANATSIATAQAARVGALAMATYPAYWPETIRALLVHGAAWTPTMRATLEQA
                     RQSGLEAQQRMLRRYGWGQPSEDRVLYSGDQAVTLVVQDEFVPFSGDEFKIPAFRLHD
                     LPWPTAVLEDLDAAAVTLRVTLSYFIEPTASRRGWRQRYRYASHALRFELQDPLESEN
                     DFVQRVNRDARTEESGGRPAAGQVKWLIGANQRNLGSLHQDEWATDGITLSRSGQLAI
                     YPVGGWWKNNRAPARIDQPVRYALVVSLKTDEQDVDLYTPIANLLKIP"
BASE COUNT          378 a          766 c          576 g          283 t
ORIGIN      
        1 gacctgtggc agtccgaggg ggcgccgccc caggcggcga gcacctggtg ggaaatctgg
       61 ctgcgcccca gcgaggacgg acctgctctg ctacgccaat tcgcagcggc acaaaacctc
      121 caagtctccc cccgacgggt ccgcctattc gatcgcacgg tcatgtggat caagggaagc
      181 tgggcgcacc tcgaagtact tccgttcacc gcggtgccga tcgctgagat ccgcgcaccg
      241 gagttcatcg acaccatcga agacctcacc ctcgaccagc aaggcgaata cgtcgagaac
      301 ctcgccgaac ggttgagtcc agcggacgac gacgcacccg ccgtgtgcca cctcgacagc
      361 ggcgtcgccc gaacccacct gctcctggaa ggttcactcg cacccgccga tctacacacc
      421 gtggtcggca ccagcgggtt tgaccgcgac ggacacggca ccaagatggc cggcgtcgct
      481 ctccttggag acctcgacca gcacctggtc ggaagccaca ccgtcgccct gcgacaccgg
      541 ctcgagtcgg tacgcatcct tcccacactc gccgagaagg aacacgaccc ggtcacctac
      601 ggcgacatca ccgcgcaggc cgtctcattg ccggagatca ccagcactcg accccgcgtc
      661 tactgtatgc ccgtgtccac aaacagcgac acacccaaca accccggcca gcccaccctg
      721 tggtcggcga cggtggacgc ccttgcggtc ggtgccagcg tcgtgcgcac cggggacgag
      781 ctgcagctcc tctcagcccc ggacccagaa gctgcccggc tgttgttggt gtccgcgggc
      841 aatgtcgacg cgttcgtgac cgcgcatctc gacgagtcgg acagttctgc tgtgcgagac
      901 ccgggccagg catggaacgc cctgaccgtc ggcgcgcata ccgagctgac gacagcgccg
      961 accgaccccg cctacaccgg ttggaccacg ctggcgcctt caggcgagtt gtcgcctcac
     1021 agccggacat ccctgctgta cggcacaaga ccgtggccaa tcaagcccga catcgtcatg
     1081 gagggcggca acgtcctgca cgacggaagc tcgctgttcg agcccagtca cgctgcggtc
     1141 tcgctcagaa ccacgggaca caccaacaac caggccctca cgtcggcaaa cgccaccagc
     1201 atcgcgaccg cgcaagccgc ccgcgtcggc gccctggcca tggccacgta ccccgcctac
     1261 tggcccgaga ccatccgcgc gctgctggtg cacggcgccg catggacacc cacaatgcgc
     1321 gccacgctcg agcaggctcg ccagagcggc ctggaagccc agcagcggat gctgcgccga
     1381 tacggctggg gccaaccctc cgaggatcgg gtgctttact ccggcgacca ggccgtcacc
     1441 ctcgtcgtcc aggacgagtt cgtgccgttc tccggcgacg agttcaagat ccccgccttc
     1501 cggctgcacg accttccctg gcccaccgca gtattggaag acctcgacgc cgctgcagtc
     1561 accctccgcg tcacgctctc gtacttcatc gaacccaccg cctcacggcg cggctggcgg
     1621 cagcgctacc gctacgcctc gcacgccctg cgatttgaac tgcaagaccc actcgagtcc
     1681 gagaacgact tcgtccaacg cgtcaaccgc gacgcacgaa ccgaggagtc cggcggccga
     1741 ccagccgccg gccaggtcaa gtggctcatc ggagccaacc agcgcaacct cggctcccta
     1801 caccaggacg agtgggcaac cgacggcatc acgctctcgc ggtcaggaca gctcgcgatc
     1861 taccccgtcg gcggatggtg gaagaacaac cgagcgccgg cgcgcatcga ccagcccgtc
     1921 cgctacgccc tcgtcgtctc gctcaagacc gatgaacagg acgtcgacct gtacacgccg
     1981 atcgccaacc tcctcaagat ccc
//
LOCUS       DASYFY010000086         7196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_373952, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000086 DASYFY010000000
VERSION     DASYFY010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7196
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373952"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..781)
                     /locus_tag="VGN19_01590"
     CDS             complement(<1..781)
                     /locus_tag="VGN19_01590"
                     /inference="COORDINATES: protein motif:HMM:NF019522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HEV7194607.1"
                     /translation="MGTSQGHAHTHLRSTNGASPDVPAVVKRGLVLVVVLLAAASLAG
                     MWALRPTGHGRPTVPNTSSSGVRYLPGVVGSLSPLDCSQVGAAPGKAVPGATVPGRAP
                     SSSVGGQCGRAIVRLDNGYTVTVDVPPEVVRAGVGTALVVMDIPGQSGSPYSYYDMDR
                     GKPLVLLALLFCVVVVAVARMRGLRALLGLAVAALVVGKFLIPALLEGHDPVALGLAT
                     SGAIMIVVLYLAHGANLRTTTALLGTMAGVAITAALGSAAVS"
     gene            complement(790..1464)
                     /locus_tag="VGN19_01595"
     CDS             complement(790..1464)
                     /locus_tag="VGN19_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 domain-containing protein"
                     /protein_id="HEV7194608.1"
                     /translation="MADDTGFTGFTPWGVTFYQQLHGSNTKEFWGQNKQDWERCVRDP
                     MRALVAELEAEFGAATVFRPNRDIRFSPDKSPYKTYQGAIAGPVAGVGYYVQLDADGL
                     MVGGGFHTHSPAQTERFRAAIDADGPGNELERITAGLLSDGFSLEGAALKIRPKGVEA
                     DHPRLDLMRRKELMALKPLGAPAWLASREALDHVREEWSTIHPLTSWIVEHVGPAEEN
                     PRSRRG"
     gene            complement(1558..2700)
                     /locus_tag="VGN19_01600"
     CDS             complement(1558..2700)
                     /locus_tag="VGN19_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEV7194609.1"
                     /translation="MDNPLLGPGLDRLRERRSIKWRLYEPDILPLWVAEMDVVPPEPV
                     RRAVIDAMETGDTGYPWAADYAQALATFGEERWAWRPDPRTMAIVPDVMLGIVEVLKL
                     LTGPGDAVVVNSPVYPPFFDFVRHLGRSVIEAPLSPLGRLDLVTLDDALGEAVRGGRR
                     AAYLICNPQNPTGAVHTAQELTDALTLAEQHGVRVVADEIHAPLVPEGARFTPVASLA
                     AGARAISLMSASKAFNLAGLKAAMAVPGPDAVTDLARIPEEVSHGASHLGVVAHSAAY
                     LEGGPWLDALLAGLDDNRRLLATLLNEHLPGVGYRLPEGTFLAWLDFSALELGEDPAA
                     VLRERARVALHPGPGFGRGGAGHARLNFGTSPDILREAVQRIAAAI"
     gene            2742..3356
                     /locus_tag="VGN19_01605"
     CDS             2742..3356
                     /locus_tag="VGN19_01605"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEV7194610.1"
                     /translation="MAAQGDQELTVGTSSASDRVLTLPNVLSSLRLVGVPVFLWAIVT
                     RHDALALATLMVSGVSDYLDGKIARRFGLVSRVGQLLDPLADRLYIATTLFGLAWRGV
                     IPWWLVAVLVGREALLAVVLWWIRRYGQIGLPVHFVGKAATFNLLYAFPLLLLGQGDS
                     SFAHWALPIGWAFAWWGVVLYWVAGVMYVVQARQVARAHTALVR"
     gene            3430..4287
                     /locus_tag="VGN19_01610"
     CDS             3430..4287
                     /locus_tag="VGN19_01610"
                     /inference="COORDINATES: protein motif:HMM:NF017734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF881 domain-containing protein"
                     /protein_id="HEV7194611.1"
                     /translation="MTLLTSMMERPLDPGYAAAAEARSSAGLPATTGVRTPVVLFAAL
                     VIGLLLTTGALSLRAPSTSALQAKAELIAQIQSRRRAVDAADTHDRALQSQVAQLQSQ
                     ALGVDQRGLQSRLDSLSLVSGAEAVTGPGVRVVVDDAPTAHPSSADANPRNNTQANDG
                     KVLSKDLQIVVNGLWEAGGEAIAVNGQRLTSRSAIRFAGEAILVNYRPLTRPYTVEVI
                     GDPASLQTNFAGNDGGQYARALKDNYGIRVSIDNVDTLTLPAATALTLRDAGIMTTTS
                     TPTTSETSP"
     gene            4284..4616
                     /locus_tag="VGN19_01615"
     CDS             4284..4616
                     /locus_tag="VGN19_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small basic family protein"
                     /protein_id="HEV7194612.1"
                     /translation="MIPLLGLVGGVLLGLLWGPHVPLGLQPYLPIAVIAALDAVFGAV
                     RAVLDGIFNDKVFVVSFLANVVVAAFIVFLGDQLGVGSQLSTGVVVVLGIRIFSNVAS
                     IRRHLFKA"
     gene            4613..5353
                     /locus_tag="VGN19_01620"
     CDS             4613..5353
                     /locus_tag="VGN19_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF881 domain-containing protein"
                     /protein_id="HEV7194613.1"
                     /translation="MTTPAPTSSWGTLLRMARPRATRANAFAALLAIGLGFAIATQVQ
                     QTSQSGLEQLREDELVRILGDVNQEQGRLNTDTRTLELTRDRLLSGVGSSSEALKSAQ
                     DRLNTLGILAGTAPATGPGVVITITDPAHKVTSALLLDALQELRDAGAEAVQIGSVRV
                     VADSWFADVNGGVQLAGESLSPPYVIRAIGDSATMASAMGIPGGVTDSVRGQGAQSTI
                     EQRTSLSITALHSLEQPRYARPVPTPSK"
     gene            5399..5788
                     /gene="gcvH"
                     /locus_tag="VGN19_01625"
     CDS             5399..5788
                     /gene="gcvH"
                     /locus_tag="VGN19_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEV7194614.1"
                     /translation="MSQPDYPQELRYTAEHEWVRTTDDGAVRIGITAFAQEALGDVVY
                     VSLPAVGDTIAAGDACGEVESTKSVSDLYAPLTGEVTAINDSLDATPELVNSDPYGEG
                     WMYELRPEDPAAVEALMDAAAYQAQLD"
     gene            5897..6352
                     /locus_tag="VGN19_01630"
     CDS             5897..6352
                     /locus_tag="VGN19_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEV7194615.1"
                     /translation="MNGSENDEQTSRPHEPTTMRLSGIGDLEQIDTTAEADVTLSKAD
                     QATVDALRPGTALLVVLRGPNTGARFLLDDDEVNAGRHPDSDIFLDDVTVSRKHANFR
                     REANTFVVRDVGSLNGTYVNRERIDEATLHTGDEVQIGKFRLVFYAGKA"
     gene            6365..7090
                     /locus_tag="VGN19_01635"
     CDS             6365..7090
                     /locus_tag="VGN19_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEV7194616.1"
                     /translation="MTPRKPRQGLTIGAVLASLQQEFPDVTISKIRFLEAEGLVTPAR
                     TGSGYRTYAERDIERLDYILRAQRDHYWPLKVIRDALDAMERGLTPDPGQTTFSAPRV
                     PEPGLDPDLPSVSELARTSSLRLTRREVAEATGLPESTVDALETFGLLRAGPSGHFGE
                     SALAVARAAAGLAGYGIEPRHLRPFRTAADREIGLVQQVVTPLRASGKRGGREAGVDP
                     TPDILRLCIALHTAVVRDGLARS"
     gene            7109..>7196
                     /locus_tag="VGN19_01640"
     CDS             7109..>7196
                     /locus_tag="VGN19_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018386697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEV7194617.1"
                     /translation="MKALDVLGVRVEMPTNHPIVLLRERGGDR"
BASE COUNT         1144 a         2520 c         2419 g         1113 t
ORIGIN      
        1 tcgagaccgc ggcggagccg agcgccgcgg tgatggccac cccagccatg gtgccgagca
       61 aggcggtggt ggtgcgcagg ttcgcaccat gcgccagata caggacgacg atcatgatgg
      121 cgccagaggt ggccagcccc agggccacgg gatcatggcc ctccagcagc gcggggatga
      181 ggaacttgcc cacgaccaac gccgccactg ccagccccaa cagggctcgc aggccacgca
      241 tcctggccac ggcgacgacc acgacgcaga acaggagggc cagcagcacc agcggcttcc
      301 cccggtccat gtcgtagtag gagtacggcg agcccgactg tcccggaatg tccatgacga
      361 ccagcgccgt gccgacgccg gccctgacca cctcgggcgg cacgtccacc gtcaccgtgt
      421 acccgttgtc gagccggacg atggcacgcc cgcactggcc acccacagag ctcgagggtg
      481 ctctacctgg aacagtcgcg cccggaacgg ccttacctgg cgccgcgccc acctgcgagc
      541 agtcgagggg gctcagactt ccaaccaccc ctggcaggta gcgcacgcct gacgaggacg
      601 tgttggggac cgtgggtcgg ccgtggccgg tcggccgcag cgcccacatg ccagccagtg
      661 aggccgcggc aagcagcacc acgaccagga cgaggccgcg cttgacgacc gcagggacgt
      721 cgggtgaggc gccattcgtc gatcggagat gggtgtgcgc gtgtccctgc gaggtgccca
      781 ctggaccact caccctcggc gcgagcgcgg gttctcttcg gctggaccga cgtgttcgac
      841 gatccagctg gtcagtggat ggatcgtcga ccactcttcg cgcacgtggt ccagcgcttc
      901 gcgagaggcg agccacgcag gcgcgcccaa cggcttgagc gccatcagct ccttgcggcg
      961 catcaggtcc agtcgcgggt ggtcggcctc gactcctttg ggacggatct tcagcgcggc
     1021 cccctccaag gagaaaccgt cgctgagcag acctgcggtg atgcgctcca gctcgttgcc
     1081 agggccgtca gcgtcgatgg ccgcccgaaa ccgttcggtc tgagcggggg agtgagtgtg
     1141 gaatccgccc cccaccatga ggccgtcagc atcgagctgc acgtagtagc cgactcctgc
     1201 gacaggcccc gcaatcgcgc cctggtaggt cttgtacggg gacttgtccg ggctgaaccg
     1261 gatatcgcgg ttcggcctga agactgtcgc cgcaccgaac tcggcctcga gctctgccac
     1321 cagagcccgc atcggatccc gcacgcagcg ttcccagtcc tgcttgttct gaccccagaa
     1381 ctccttcgtg ttcgacccat gcagctgctg gtagaaggtc acgccccagg gcgtaaaacc
     1441 agtgaaccca gtgtcgtcag ccatgcaccc actctggcac gcggcatacc ggaggtggca
     1501 caaacccctt gcgagaccgc ctggcgacgc cgcgacgatc gtgatgtcgg ataggcgtca
     1561 gatggcagcg gcgatccgct gcactgcttc gcgcaggatg tccggcgagg tcccgaagtt
     1621 cagccgcgca tggccggcgc ctccccgccc gaaaccaggc ccggggtgca gggccacgcg
     1681 ggcacgctcg cgcagtaccg cggccgggtc ctcgcccagc tccagcgcgc tgaagtccaa
     1741 ccaggccagg aaggtgcctt cggggaggcg gtagccgacg cctggaaggt gctcgttgag
     1801 cagggtggcg aggagccgcc ggttgtcatc cagcccggcg aggagagcgt ccagccaggg
     1861 gccaccctcg aggtaggcgg cactgtgggc caccacccca agatggctgg cgccgtgcga
     1921 cacctcctcg ggaatccggg caaggtcggt gacagcgtcc gggcccggca cggccatcgc
     1981 cgccttgagc cccgccaggt tgaacgcctt cgaggcggac atcagcgaga tggctcgagc
     2041 gcccgccgcc aatgacgcga cgggggtgaa ccgggcgccc tccgggacga gcggcgcgtg
     2101 gatctcgtcg gccaccaccc gaacgccgtg ctgttcggcc agcgtcagtg cgtcggtgag
     2161 ctcctgcgcg gtgtgcacgg caccggtcgg gttctgcggg ttgcagatca ggtatgccgc
     2221 ccgccgaccg ccgcggaccg cctcgccgag ggcgtcgtca agggtgacca ggtcaaggcg
     2281 tcccagcggt gacaggggcg cctcgatgac gctcctaccc agatgccgca cgaagtcgaa
     2341 gaacggcggg tacaccggcg agttcaccac taccgcgtct cccgggcccg tgagcagctt
     2401 gagcacctcg acgatgccga gcatcacgtc cgggacgatc gccatggttc gcgggtcggg
     2461 ccgccatgcc cagcgctcct cgccgaaggt ggccaacgcc tgcgcatagt ccgccgccca
     2521 cgggtaaccg gtgtcgcccg tctccatggc gtcgatgacc gcgcggcgca ccggttcggg
     2581 cggtacgaca tccatctcgg ccacccacag cgggaggatg tcgggttcgt agagccgcca
     2641 cttgatactg cgccgctcac ggaggcgatc cagccctggc ccgagcagtg ggttgtccat
     2701 gcctgcgaac tctacgagag cactgaggtt aggcttcccg cgtggcggca caaggcgatc
     2761 aggagctgac ggtggggacg tctagcgcct ccgaccgggt cctgaccttg ccgaacgtgc
     2821 tgtcctcgct acgcctggtc ggcgtgcccg tcttcctgtg ggccattgtc acccgccatg
     2881 acgcgctcgc gctggcgacc ctcatggtgt ccggcgtcag cgactacctc gacggcaaga
     2941 tcgcgcgccg cttcggcctg gtctcgcggg tgggccagct gctggacccg ctcgccgacc
     3001 gcctctatat cgccacgacg ctgttcgggc tggcctggcg gggggtcatc ccgtggtggc
     3061 tggtagcggt cctggtgggc cgtgaggcgt tgctggcggt ggtgctgtgg tggatccggc
     3121 gctacggcca gatcgggctg ccggtgcact tcgtcgggaa ggccgcgacg ttcaacctgc
     3181 tgtacgcctt ccccttgctg ctgctcggtc agggggacag ctccttcgcc cactgggcct
     3241 tgccgatcgg ctgggcgttc gcgtggtggg gtgtggtcct ctactgggtc gccggggtga
     3301 tgtacgtcgt gcaggctcgt caggtcgcgc gggcacatac cgcgctggtc aggtaggccg
     3361 gccgtggtcc cgacctcgca ccgcgacgcg acgccgccaa ccccttcggc tcgccgcccc
     3421 gacgagtcca tgacgctgct cacctccatg atggagcggc ccctggatcc ggggtatgcc
     3481 gcggcagccg aggcgcgcag cagcgcgggc ctgccggcca ccaccggcgt caggacgccg
     3541 gtggtgctct ttgcagcgct cgtcatcggg ctgctgctca cgacgggtgc cctgtcgctg
     3601 cgggcgccgt cgacctccgc gctccaggcc aaggccgagc tcatcgcgca gatccagtca
     3661 cgccgcaggg cggtggacgc ggcggatact cacgaccggg cccttcagag ccaggttgcc
     3721 cagctgcaga gccaggcact cggcgtcgac cagaggggcc tgcaaagtcg ccttgactcg
     3781 ctgtcactgg tctccggggc tgaggccgtt acaggtccgg gggtccgcgt cgtcgtggac
     3841 gacgccccca ccgcccaccc gagcagcgcc gacgccaacc cgagaaacaa cacgcaggcc
     3901 aacgacggga aggtgctctc caaggacctg cagatcgtgg tcaacggact ctgggaggcc
     3961 gggggcgagg cgatcgcagt caacggccag cgcctcacct cgaggtcggc catccggttc
     4021 gccggtgagg cgatcctggt gaactaccgc ccgctcaccc gtccctacac cgtggaggtc
     4081 atcggcgacc ccgcgtcgct gcagacgaac ttcgcaggca acgatggggg ccagtacgcg
     4141 cgtgccctca aggacaacta cggcatccgt gtttccatag acaacgtcga cacgctgacg
     4201 ctgccggcgg cgaccgccct gaccctgcgc gatgccggga tcatgacgac gaccagcacc
     4261 ccgaccactt cggagacctc accgtgattc ccctgctcgg cctcgtcgga ggagtgcttc
     4321 tcggactgct gtggggtcct cacgttcccc taggcctgca gccctatctc ccgattgcgg
     4381 tgatcgccgc gctcgacgca gtgttcggtg cggtgcgcgc ggtcctcgac ggcatcttca
     4441 acgacaaggt cttcgtcgta tccttccttg ccaacgtcgt ggtggccgcc ttcatcgtct
     4501 tcctcgggga ccagctcgga gtcggctctc agctgtcgac cggagtcgtg gtcgtcctcg
     4561 ggatccgcat cttctccaac gtggcctcga tccgtaggca cctgttcaag gcatgaccac
     4621 tccagctccg acctcgtcct gggggaccct tcttcggatg gcccgcccca gggcgacgcg
     4681 agccaacgcg ttcgcggctc tgctcgcgat cggactgggc ttcgccatcg ccacccaggt
     4741 ccagcagacg agccagagcg ggctcgagca gctccgagag gacgagctgg tgagaatcct
     4801 gggcgatgtc aaccaggagc agggccgact caacacggac acccgaaccc tggagctgac
     4861 ccgtgaccga cttctgtcag gagtcggctc gagctcggag gcgctgaagt ctgcgcagga
     4921 ccggctgaac acgctgggca ttctcgccgg tacggccccg gccacaggtc cgggcgtcgt
     4981 catcacgatc accgacccag cccacaaggt gacctcggcc ctcctgctcg atgcgttgca
     5041 ggagctgcgg gacgccggcg ccgaggcggt ccagatcggc agcgtccggg tggtcgccga
     5101 cagctggttc gcggacgtca acggcggggt gcagctcgcg ggggagtcgc tgtccccgcc
     5161 gtacgtcatt cgcgccatcg gtgacagtgc cacgatggcc tccgcaatgg gcatccccgg
     5221 gggtgtgacg gactcggttc gagggcaggg cgcgcagtcc accatcgagc agcggacctc
     5281 cttgagcatc accgcattgc acagtctcga acagcctcgt tacgctcggc ccgtcccgac
     5341 gccgtcgaag tgacgacgtc accgtgacga catcccgcac caccccgaga ggattcgcat
     5401 gagccagccg gactaccccc aggaactgcg ttacaccgcc gagcacgagt gggtgcgcac
     5461 caccgacgac ggggcggttc ggatcgggat caccgcgttc gcgcaggagg cactgggcga
     5521 cgtcgtctac gtcagccttc cggcggtggg agacaccatt gcagccggcg atgcctgcgg
     5581 tgaggtcgag tccaccaagt cggtcagcga cctgtacgcg ccgctgaccg gcgaggtcac
     5641 ggccatcaac gactcgctgg acgccacgcc cgagctggtc aactccgacc cctacggcga
     5701 gggctggatg tacgagcttc gtcccgagga cccggccgcc gtcgaagccc tcatggacgc
     5761 ggcggcatac caggcgcagc tcgactgagc cgcccgcagt tctggcaaac gactgccaac
     5821 ccccatggcc gtctcctagg tttgtgcttt gctagtgggg gagaccgggg cccgacacac
     5881 gaggagcgca gaacccatga acggcagcga gaacgacgag cagacgtcgc gcccccatga
     5941 gccgacgacg atgcggctgt cagggatcgg tgacctcgag cagatcgaca ccaccgccga
     6001 ggccgatgtc acgctgagca aggccgacca ggccacggtc gacgcgttgc gccccggcac
     6061 tgcgttgctg gtggtcctgc ggggcccgaa caccggcgca cgcttcctgt tggacgacga
     6121 tgaggtcaac gctgggcgcc accccgacag cgacatcttc ctcgatgacg tgacggtgtc
     6181 gcgcaagcac gccaacttcc gccgcgaggc caacaccttc gtggtgcggg acgttggctc
     6241 gctcaacggc acctacgtca accgcgagcg catcgacgaa gcgaccctgc acaccggcga
     6301 cgaggtacag attggcaagt ttcggctggt cttctacgcc ggcaaggcgt agccaaggtc
     6361 tttggtgacg cctcgcaagc cgcgtcaggg tctgacgatc ggggcagtcc tcgcgagcct
     6421 ccagcaggag tttccggacg tcacgatctc gaagatccgg tttctcgagg ccgagggtct
     6481 ggtcacgccg gcccgtacgg gctcgggtta ccggacgtat gccgagcggg acatcgagcg
     6541 cctggactac atcctgcgcg ctcagcgcga tcactactgg ccgttgaagg tcatccgtga
     6601 cgccctcgat gccatggagc gtggactgac ccccgatccg ggccagacca cgttttcggc
     6661 accccgggtc cccgaacccg gcctcgaccc agacctgcca tcggtctcag agctcgcgcg
     6721 caccagcagc ctgcggctga cccgccgaga ggtcgccgag gcgaccggcc tgcccgagtc
     6781 cacggtcgac gccttggaga ccttcggcct cctgcgcgcc ggcccttccg gtcacttcgg
     6841 cgagtccgcg ctggccgtcg cccgggcggc cgcaggactg gcgggctatg gcatcgagcc
     6901 ccggcatctg aggccgttcc gcaccgccgc cgaccgtgag atcgggctcg tccagcaggt
     6961 cgtgacgccg ttgcgcgcct ccggcaagcg cggtggtcgc gaggccgggg tggatccgac
     7021 cccggacatt ctgcgcttgt gcatcgccct gcacaccgcc gtggtgaggg acgggctcgc
     7081 gcgcagctga acggggtacg gtagagcagt gaaggctctg gatgttctgg gtgtgcgcgt
     7141 cgagatgccc accaaccacc cgatcgtgct gctgcgcgag cgtggtggtg accgct
//
LOCUS       DASYFY010000087         3475 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_6477, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000087 DASYFY010000000
VERSION     DASYFY010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3475
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6477"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            168..956
                     /locus_tag="VGN19_01645"
     CDS             168..956
                     /locus_tag="VGN19_01645"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194618.1"
                     /translation="MTTRTSYAQGTPCWVDLQTSDQDAARTFYAGVFGWEFVENPMPD
                     GAVYAMAQLGGRNAAAIAPQSPEQAAAGIPPLWNTYLAVDDVDAATTRAAEAGGMVAM
                     EPFDIMDAGRMSFVADPTGAFVGLWQANQHIGSEVVNEPGAVTWNELVTTDPDKALPF
                     YETVLGLKAVSVPMGPEYTYTMLQVGDQQVGGSTAPAMEGEPNHWNIWFSVASADETA
                     ARIAELGGSLLVEPRDMPVGRMAVGRDPQGAVFSLLQPSEQPSA"
     gene            1112..1837
                     /locus_tag="VGN19_01650"
     CDS             1112..1837
                     /locus_tag="VGN19_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009082701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194619.1"
                     /translation="MMKNAVEIDHLRVVRGGRTVIPDLSVAIPAGQVVGLLGPSGSGK
                     STLIRAIVGVQIVEAGDVRVLGEPAGAPGLRHRVGYVTQSPSVYDDLTVRANVRYFAS
                     ILGQPSSAADDAVEVVDLTSHADVLVGKLSGGQRSRVSLASALVGDPELLVLDEPTVG
                     LDPVLRRDLWNLFHRLADRGCSLLVSSHVMDEASRCDRLLLLREGQILADDTLGSLLS
                     QTGATDAETAFLALIDRAQESAR"
     gene            1834..2568
                     /locus_tag="VGN19_01655"
     CDS             1834..2568
                     /locus_tag="VGN19_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7194620.1"
                     /translation="MNLNRTLVTAGRVLTQLRSDRRTIGLMLVVPCVLMGLLAWIFKD
                     TPVFDAIGASLLGVFPFVVMFIVTSVATLRERTSGTLERLLTTPMGKGDFMLGYALAF
                     GTMAILQALVATTFAVYVCGLSVAGPLWQLVLVAVFDAVLGTALGLLASGFARTEFQA
                     VQFMPAFVLPQFLLCGLLVARGSLPDVLRWVSDVLPLSYAVDAMKAVTASASPGSDVA
                     GDAAVIGLWVAVSLALGSLTLRRRTA"
     gene            2667..>3475
                     /locus_tag="VGN19_01660"
     CDS             2667..>3475
                     /locus_tag="VGN19_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEV7194621.1"
                     /translation="MDASDLLRNSLLQLSKSGAVRQAVEKAPVSRSVVRRFVPGEGTQ
                     DAVAATAELRATNRLATIDYLGEDTADLTQAIRTRDHYLELLKALADADLSQHGMGEV
                     SLKLSALGQYLPGDGDKIALEHAREICQAAANAGTTVTLDMEDHTTTDATLESLRELR
                     KDFPTVGAVIQSYLRRSEADCSDLAYEGSRVRLCKGAYKEPESVAFQSSGDVDQSYVR
                     CLKILMGGQGYPMVASHDPRLVEIAGALAAHHGREAQSYEFQMLYGIRPEE"
BASE COUNT          511 a         1224 c         1184 g          556 t
ORIGIN      
        1 cacgacctcg gcgcccagat catcccgggc gcccgcgcga acgggtcctt cggccccgcc
       61 gtcgagatcg cggaccgggc cggggcgctc gaccggctcg tcgccctgtc cggacggacc
      121 gcctgaccac cagcaaggcc accagaacac tcacgaaagg caccaccatg accacgagaa
      181 cctcctacgc gcaggggacc ccatgctggg tcgacctgca gacctccgac caggacgccg
      241 cccgcacctt ctacgccggc gtgttcgggt gggagttcgt cgagaacccg atgcccgacg
      301 gcgccgtcta tgccatggcg cagctgggcg ggcggaacgc cgccgcgatc gccccgcaga
      361 gtcccgagca ggccgccgcc ggcattccgc cgctgtggaa cacctatctc gccgtcgacg
      421 acgtcgacgc cgccacgact cgggctgccg aggcgggtgg catggtcgcc atggagccgt
      481 tcgacatcat ggacgcgggc cgaatgtcct tcgtcgcgga cccgaccgga gccttcgtcg
      541 gcttgtggca ggccaaccag cacatcggtt cggaggtcgt caacgagccg ggagcggtca
      601 cctggaacga gctggtgacc acggaccccg acaaggccct gcccttctat gagacggttc
      661 tcggcctcaa ggccgtgtcc gtgcccatgg gtccggagta cacgtacacg atgttgcagg
      721 tcggcgacca gcaggtcggt ggctcgaccg ctccggcgat ggagggcgag ccgaaccact
      781 ggaacatctg gttctcggtg gcctcggccg acgagaccgc ggcccgcatc gccgagctcg
      841 gcggatcgtt gctggtcgag cccagggaca tgccggtcgg ccggatggcc gtgggtcgcg
      901 acccgcaggg cgcggtcttc agcctgctcc agccgagcga gcagccgtcc gcctgaccca
      961 cgctctcgac gcaggtatgc cgcgtcaccc tcgggtgacg cggcatacct gtctgtcctg
     1021 gctcttccgt tctggctctt ccgttctggc tcttccgttc tggcagtgag cgactcttgc
     1081 cgcacggaag ggccggcggt atattcatcg catgatgaaa aacgcggtgg agatcgacca
     1141 tctcagggtg gtcaggggtg gacgtaccgt catccccgac ctgagcgtcg cgatcccggc
     1201 cggccaggtg gtcgggctgc tcggccccag cgggagcggc aagtcgacgc tgatccgggc
     1261 gatcgtcggc gtgcagatcg tcgaggccgg cgatgtccgg gtcctgggcg agccggcggg
     1321 cgccccaggg ttgcgtcacc gggtcggcta tgtcacccaa agtcccagcg tctacgacga
     1381 cctcaccgtg cgcgccaacg tgcggtactt cgccagcatc ctcggtcagc cgtcgagcgc
     1441 ggcggatgac gccgtcgagg tggtcgatct cacgagccac gcggacgtgc tcgtggggaa
     1501 gctgtccggg ggccaacggt cgcgggtgtc gctggcgtcg gccttggtcg gcgaccccga
     1561 gctgctggtc ctcgacgagc ccaccgtcgg cctggatccg gtgttgcgtc gggacctgtg
     1621 gaacctcttc caccgccttg cggaccgagg ctgctcgctc ctcgtctcca gccacgtcat
     1681 ggacgaggcc agccgctgcg accgactgct gctgctgcgc gagggccaga tcctcgccga
     1741 cgacacgctc ggctcgctcc tgtcccagac cggcgcgact gatgccgaaa ccgcgttcct
     1801 cgccctcatc gaccgcgccc aggagtcagc ccgatgaacc tgaaccgtac gctcgtcacc
     1861 gccggccggg tgctgaccca gctgcgttcg gaccgccgca cgatcggtct gatgctggtc
     1921 gttccctgcg tcctgatggg actgctggcc tggatcttca aggacacccc cgtcttcgac
     1981 gctatcggcg catcgttgct cggggtcttt cccttcgtcg tgatgttcat cgtcaccagc
     2041 gtcgccaccc tgcgggagcg gacctccggg accttggagc gcctgctcac gactccgatg
     2101 ggcaagggcg acttcatgct ggggtacgcc ctggccttcg gaaccatggc gatcctgcag
     2161 gcgctggtcg cgacaacctt cgcggtgtac gtctgcgggc tctcggtggc cggaccgttg
     2221 tggcagctgg tgctggtggc cgtgttcgac gcggtgctgg gcacggcgtt ggggctgctg
     2281 gccagtgggt tcgcccggac cgagttccag gcggtgcagt tcatgcccgc cttcgtgctg
     2341 ccgcagttcc tgctctgcgg gctgctcgtg gcccggggga gcctgcccga cgtgctgcgc
     2401 tgggtctccg acgtgctgcc gctgtcgtat gccgtggacg cgatgaaggc ggtgaccgcc
     2461 agcgccagcc ccggctcgga cgtcgcaggc gacgccgcgg tgatcgggct ctgggtggcc
     2521 gtgtcgctcg ccctcggtag cctgacgttg cgacgccgca ccgcctgagg gcgcggccga
     2581 accgcctgac ggcgcgggct tcgatctggt ggcgttagcc ttggcgccgg tcacgagacg
     2641 cgtgacccat ggccggaagg acatcagtgg acgccagtga cctgctgcga aacagcctgc
     2701 tccagctctc caagagtggg gcagtgcgac aggccgtcga gaaggccccg gtcagccgca
     2761 gcgtcgtccg ccggttcgtg cccggggagg gcacccagga cgcggttgcc gcgacggccg
     2821 agctgcgcgc cacgaaccgc ctcgccacga tcgactacct cggcgaggac accgccgacc
     2881 tcacccaggc gatccggacc cgcgaccact acctcgagct cctcaaggcc ctggcggacg
     2941 ccgacctgag ccagcacggc atgggcgagg tcagcctcaa gctctcagcg ctcggccagt
     3001 acctgcctgg cgatggcgac aagatcgccc tcgagcacgc gcgcgagatc tgccaggcgg
     3061 ccgcgaacgc ggggaccacg gtcaccctcg acatggaaga ccacaccacg actgacgcca
     3121 ccttggagtc cctgcgcgag ctgcgcaagg acttcccgac cgtcggggct gtgatccagt
     3181 cctacctgcg gcgcagcgag gcggactgca gcgacctcgc gtacgaaggc agtcgcgtac
     3241 ggctgtgcaa gggcgcctac aaggagcccg agagcgtggc gttccagagc tccggcgacg
     3301 tcgaccagag ctacgtgcgc tgtctgaaga tcctcatggg cggccagggc tacccgatgg
     3361 tcgccagcca tgacccccgg ctggtcgaga tcgccggcgc cttggcggct caccatggtc
     3421 gcgaggccca gagctacgag ttccagatgc tgtacggcat ccggcctgaa gagca
//
LOCUS       DASYFY010000088         7878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_111516, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000088 DASYFY010000000
VERSION     DASYFY010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7878
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111516"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..810)
                     /locus_tag="VGN19_01665"
     CDS             complement(97..810)
                     /locus_tag="VGN19_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011693376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HEV7194622.1"
                     /translation="MAPTRSPRSRRSAGWVPYALLALVVVPAIAGSLRILELAGGPHL
                     LPANPRVSASPLPVMVHISCAISYAVLGAFQFSAGFRRRRPGWHRVAGRVLAVLGLAV
                     AVSALWMTQFYPREPGTGALAYLFRVAFGSGMAVSIVIGFAAIRHGDVNRHRAWMTRA
                     YALALGAGTQVLTLGIGKAVFGTSTLTKDLSLGAGWAINLTVAEYVIRRRGSRKAINR
                     RRPVTGRPRVRAGAGAGSG"
     gene            complement(825..1517)
                     /locus_tag="VGN19_01670"
     CDS             complement(825..1517)
                     /locus_tag="VGN19_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194623.1"
                     /translation="MTITTTKLTGAAGVAAAVGGLLYIGVQINHPHLDLALVTTTEWK
                     VRQTMKVLFASLSLAGITGMYLRQVTRAGVVGLIGYLVLAMGFLLMLCTEVIGVVVVP
                     TIAATSSGYVSDVLAVSVPGGHATGDIGLMGPFSRVVGVGYLGGGLLFGIALFRARIL
                     ARWAAALLAVGAVATLAIPLLPQVNFRLFAIPTGVALVGLGYSLWREQRTPAAQPVPS
                     RAGSQLDPVGVE"
     gene            complement(1663..4374)
                     /locus_tag="VGN19_01675"
     CDS             complement(1663..4374)
                     /locus_tag="VGN19_01675"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEV7194624.1"
                     /translation="MSDPLIATKLYLPKPRRGLVPRPRLIDRLSRGAQSRLTLVSAPA
                     GFGKTTLLSDWLQDELAVAGAVAWLSLEASDNQPASFWTYLVTALRGASPSVGAVSLE
                     LATSLPLPSELLLTTLLNELAEASGELWLVLDDYHLVDNPEIGRAMTVLLEHLPPQVH
                     VVVSTRADPDLPLSRWRVRGELVEVRAADLRFTSDEAAAYLFSATGLRLSAQDIDFLE
                     GRTEGWIAALQLAALSLQGRRDVSTFIAQFAGNDRYVVDYLVEEVLEHQPVAVRDFLL
                     ESAVLDRMTGPLCDAVTGHKGGSETLLALERANLFIVPLDDRREWFRYHHLFADVLRA
                     LLLAQQPEQLPLLHQRASGWYERHDMAQDAVEHAVAARDFDRAARLVELAVPAIRRDR
                     HDATLVGWFAALPDGVIRASPVLSVFFGHMLLASGDLDGVEPRLADAERALAAIPDGS
                     GHPWSQGGELDALPATIAVCRAALAQARGDVAGTAEHARRALVLAGPSDHVARSGAAG
                     FLGFAAWSSGDVCTALEMFAQVPPALHAAGNLVDELDSTVVLADLWLLAGRPSKARGL
                     YDDALKVAASLGEPVARSTSELHVGLSEIDRESGDLRAARRHLEGAAPFIERGVTTES
                     RYRWFLAMGRIAQAEGDADAAIALLDQAELLYRPAFFPEVRPIAAMRARIWIWQGQLS
                     QGADWARQRGVSAADELRFLREFDHLTLVRLLIAQYRARQDDESLDQASRLLGRLHGA
                     AEESGRGGSLLEIRMLQALAHQAKGLRDVAREVLGQALREAPEPDGYARLFLDEGVPM
                     IGLLQDAEQNGVAVDETRRMLSLHTTVGRDVPDSARRPAQPAESLSERELQVLRLLDS
                     DLSGPQIAKELFVSHNTVRTHTKHIFTKLDVTNRRAAVRRARERGLM"
     gene            complement(4427..5065)
                     /locus_tag="VGN19_01680"
     CDS             complement(4427..5065)
                     /locus_tag="VGN19_01680"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEV7194625.1"
                     /translation="MSPPDVKGRAYDATGRRASAEARRVRTIAAARDRFLTAGYAATT
                     VAAVAADSQVSVDTIYKSFGGKLGLLEAAWWRALEGRGSRPAEERADEEARRGDARSI
                     VHTWATLSAEVAGEASRLFALIRALAVVDPAVDDLYQRIEHSRSERMTHNAQLLAATG
                     ALRPELSLEQARDILLAVSGHLPEPLLDRAGWSSPAYIDLVDRILRAALLAH"
     gene            5120..5542
                     /locus_tag="VGN19_01685"
     CDS             5120..5542
                     /locus_tag="VGN19_01685"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEV7194626.1"
                     /translation="MPDPLALPTAVIDRLVERTNAHDLEGLVASFAPDYVLTNPVHPT
                     RDFVGSEQVRRNWAGLFAGVPDLAASVRSMVADGEQVWVEMAVDGIRQDGVPVHLAGV
                     QIFTVSEGLIRACRFYFEPVEPVGVDADGAIRQAVGQP"
     gene            5539..6345
                     /locus_tag="VGN19_01690"
     CDS             5539..6345
                     /locus_tag="VGN19_01690"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEV7194627.1"
                     /translation="MITVVGGTGRLGREVVASLLAKQKSVRVVSRHARSRSSDGDSRL
                     AGAEFVDADVTDPGQARSAIAGSTYVVAAMTGMDPRTGAGPQAVDRDGAISLIDAAAE
                     TGCHVVLVSVVGAAADSPIELFRAKWSAEAHLRASDLPWTIIRATAFAELWSDILNSS
                     AGRDGRARVFGPAHNPMNFVHVADVAAAVVRAIDERTLVGQCVEVGGPDTLSLTELAT
                     RLTGRAPRHLPIALVRAVALGARPFAPGVARIARQALAMEEVDLAFTAAT"
     gene            6437..6922
                     /locus_tag="VGN19_01695"
     CDS             6437..6922
                     /locus_tag="VGN19_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194628.1"
                     /translation="MRLNSRFSKISYAAAGLVAGGVLATTLGAQAATVSPSATTSTTS
                     SSTATADPHPGDNGADGVPEANEVHGGALSLSGTVTAVSSSSVTIKTSTATTVYAVTS
                     SSDIDKNGEATVSALVVGDKVTFSVNSANAKQIDKLHAGDETKNRPTGAAPSGPSSNA
                     G"
     gene            7126..>7878
                     /locus_tag="VGN19_01700"
     CDS             7126..>7878
                     /locus_tag="VGN19_01700"
                     /inference="COORDINATES: protein motif:HMM:NF014601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HEV7194629.1"
                     /translation="MRHAVLGAGGVGGLLAAALARSGEDVVLLLRDETLRRYPDHLQV
                     DSVVLGSFSAEVEATARLERPVDVLWVATKSTGLDESLAAAPAQAVGHALVVPLLNGL
                     DHVARLRRDYDLVSAAAIRVETERTAPGRIRQLSPFLGVEISPDPDRPSARAVVERAA
                     AALTAAGVPTTVRDDELGVLWDKFALLAPLALATTGLDATLGAVREDARFVGCQDEVF
                     ELAHREGASTDPEAVRRLVRAAPDDMRSSMQKD"
BASE COUNT         1256 a         2658 c         2821 g         1143 t
ORIGIN      
        1 acgtgcggtc accaagccag gccgcccagt ggccgtccag atgtccggcg acccgaagcc
       61 gatagccggt cggctccggt ggaccggggg gccgcgtcat cccgaccccg ctcctgcgcc
      121 tgccctgacg cggggtcggc ctgtgacagg gcggcgacgg ttgatggctt tgcgactccc
      181 gcgacgccgg atgacgtact cggccacggt caggttgatg gcccaacccg cgcccaggct
      241 cagatccttg gtgagcgtgc tggtgccgaa gactgccttc ccgatgccta gggtgagcac
      301 ctgggtgccg gcgccgaggg ccagggcgta ggcgcgcgtc atccaggccc ggtgacgatt
      361 cacgtcaccg tggcggatag ccgcgaagcc gatcacgatg ctgacggcca tgcccgagcc
      421 gaaggccacc cggaacaggt aggcgagcgc gccggtgccg ggctcgcggg ggtagaactg
      481 cgtcatccag agggccgaaa ccgccaccgc aaggccaagc accgcgagca cccgtccagc
      541 cacccggtgc cagcccggcc ggcgacgccg gaacccagcg gagaactgga aggcgcccag
      601 gacggcatac gagatggcgc agctgatgtg caccatcacc ggcaggggcg aggcgctgac
      661 ccgggggttg gccgggagca ggtgcggacc accagcaagc tcgaggatcc gcagcgagcc
      721 agcgatggcg gggaccacga cgagtgcgag cagcgcgtac ggcacccacc cggccgaccg
      781 acgcgaccgg ggcgaccggg tgggtgccac tggcgcgtgg agggtcactc gacaccgacc
      841 gggtcgagct gcgagccggc acggctgggc acgggctggg ccgcgggcgt gcgctgctcg
      901 cgccacaggg agtagccgag gccgaccagg gcgacgccgg tcgggatggc gaagagcctg
      961 aagttgacct gcggcagcag gggaatcgcg agggttgcga cggcgccgac ggcgagcagt
     1021 gccgcggccc accgggcgag gatgcgggct cggaagagtg cgatgccgaa caggaggccg
     1081 ccgccgaggt agccgacgcc gacaactcgg ctgaagggac ccatcaggcc gatgtcgccg
     1141 gtcgcgtggc cgccgggaac ggaaacggcg aggacgtcgc tgacatagcc ggatgaggtg
     1201 gcggcgatgg tggggacgac gaccacaccg atgacttcgg tgcagagcat gaggagaaag
     1261 cccatggcga gcacgaggta cccgatcagg ccgacgactc cggcccgcgt cacctggcgc
     1321 aggtacatac cggtgatgcc ggcgagcgac aacgaggcga acagcacctt catcgtctgg
     1381 cggaccttcc actcggtcgt ggtgacaagg gcgaggtcaa ggtgggggtg gttgatctga
     1441 acgccgatgt agagcaggcc cccgacggcg gcggcaacgc cggccgcccc ggtgagcttg
     1501 gtggtggtga tggtcatgtc cggctcctgg ttcgaggtcc ttggctggct gccgcgggct
     1561 gactcgaacg tagggaccgg tcgggtgacc gggcgtcacc cagcgatgtg actgactgga
     1621 tgacatcggc ggtcgggagg ggtggtgcag gccgggggag ggctacatca ggccgcgttc
     1681 gcgggcgcgt cggaccgccg cccggcggtt ggtgacatcg agcttggtga agatgtgttt
     1741 ggtgtgagtg cgcacggtgt tgtgggagac gaacagctcc ttggcgatct gtggcccact
     1801 caggtcactg tcgagcagtc gcagcacctg tagttcccgc tcgctgagcg actcagccgg
     1861 ctgtgctggg cgccgcgctg agtcgggcac atctcggccg acggttgtgt ggagactcag
     1921 catccggcgc gtttcgtcga cagcgacgcc gttctgctca gcgtcttgca gcagcccaat
     1981 catcgggaca ccctcatcca ggaagagtcg ggcgtagcca tcgggctcgg gtgcctcgcg
     2041 caaagcctgg cccagcacct cgcgggccac gtcccgaagt cccttcgcct gatgggcgag
     2101 cgcctggagc atgcgaatct cgagcaggct tcccccgcgt ccggactcct cggcggcgcc
     2161 gtgcagccgg cccaagagcc gcgacgcctg gtcgagcgac tcgtcgtcct ggcgtgcccg
     2221 gtactgggcg atgagcaggc gcaccagggt gaggtggtcg aactccctca gaaacctcag
     2281 ctcgtcggcg gcggacacgc cgcgttggcg tgcccagtcc gcaccctgcg acagctgtcc
     2341 ctgccagatc cagatgcgag ccctcatcgc cgcgatgggc cgcacctcgg ggaagaacgc
     2401 gggccggtag agcagttcgg cctggtccag cagggcgatg gcggcgtccg cgtcaccctc
     2461 agcctgggcg attcgtccca tcgccaggaa ccaccggtag cggctttcgg tcgtgacccc
     2521 ccgctcgatg aagggcgcgg caccctcgag gtggcgacgt gcggcacgaa ggtctcccga
     2581 ttcgcggtcg atctcgctga gccccacgtg cagctcggac gtcgaacggg ccacgggttc
     2641 gcccagggac gccgcgacct tcaaggcgtc gtcgtacagc ccccgagcct tgctgggtcg
     2701 acccgcgagc agccacaggt cggcgagcac caccgtgctg tcgagctcgt cgaccaggtt
     2761 gcctgccgcg tgcaaggcgg gcggcacctg cgcgaacatc tccaacgcgg tgcagacgtc
     2821 ccccgaggac caggcggcga agcccaggaa gccggccgcg ccgctgcgcg caacatgatc
     2881 gctgggtcca gccaggacaa gtgcccgccg tgcgtgttcg gcggtgcccg ccacatcgcc
     2941 gcgcgcttgg gcgagcgctg cgcggcatac cgcgatggtt gccggcaggg cgtccagctc
     3001 accaccctgc gaccaggggt ggcccgaccc gtcgggtatc gcagcgaggg cgcgttccgc
     3061 atcggcgagc cggggctcga ccccatccag gtcacctgag gccaagagca tgtgtccgaa
     3121 gaagacgctg agcactggac tggcacggat gacgccgtcg ggcagtgctg cgaaccagcc
     3181 aaccagggtg gcgtcgtgtc ggtcgcgtcg gatcgcgggc accgcgagct ccacgaggcg
     3241 cgcggcccgg tcgaagtccc tggcggccac ggcgtgctcg accgcatcct gtgccatgtc
     3301 gtggcgctcg taccatccgc tggcgcgctg gtgcagcagc ggaagctgct ccggctgctg
     3361 ggccagcaga agcgcccgca ggacatcggc gaagaggtgg tgataccgga accactcgcg
     3421 ccggtcatcg agcgggacga tgaacaggtt ggcccgctcg agcgccagaa gcgtctcgct
     3481 cccgcctttg tggccggtga ccgcgtcgca cagcggaccc gtcatgcggt cgagtacggc
     3541 cgactccagc aggaagtcgc gaaccgcaac aggttggtgc tcgaggacct cctcgaccag
     3601 gtagtcaacg acgtaccggt cgttgccggc gaactgggcg atgaaggtgc tcacgtcccg
     3661 ccggccttgg agggagagtg cggccagctg cagtgcggca atccagccct cggtgcggcc
     3721 ttccaggaag tcgatgtcct gagcgctgag gcgcagcccc gtcgcggaaa acaggtaggc
     3781 ggcagcctcg tccgaggtga agcgcaggtc cgcggcgcgg acctcgacca gctcgccgcg
     3841 cactcgccac ctggacaagg gcaggtccgg gtcggcccga gtactgacca ccacgtgtac
     3901 ctgtggcgga aggtgctcca gcaggacggt catcgcccgg ccgatctcag ggttgtcgac
     3961 caggtggtag tcgtccagca ccagccagag ctcacccgat gcctcggcga gctcgttgag
     4021 gagcgtggtg agcagcagct cgctcggcaa cggaagggac gtggcgagct ccagggagac
     4081 cgcgccgacg ctgggtgagg cgccgcgcag cgcagtcacc agatacgtcc agaacgacgc
     4141 gggttggttg tccgaggcct ccagggacag ccaggccacg gcgccggcca ccgcgagctc
     4201 gtcctgaagc cagtcggata ggagcgtggt cttgccgaac cccgccgggg cggacaccag
     4261 ggtcaaccgc gactgtgctc ctcggctcag acggtcgatg agtctggggc gcggcaccag
     4321 accgcgtcgc ggtttcggga ggtagagctt cgtggcaatc agtggatccg acacgcgatt
     4381 ccccatcaag cgtgcacaac cccggccgag atgtgcgacg cccaggctag tgcgccagga
     4441 gtgcggcccg caggatgcgg tcaacgaggt cgatgtatgc cgggctggac caccccgctc
     4501 ggtcgagcaa gggttcggga aggtggcctg agacggccag caggatgtcc ctagcctgct
     4561 cgagggacag ctcggggcgc agcgcgccgg tagcggcgag gagctgcgcg ttgtgggtca
     4621 tccgctcgct tctggagtgc tcgatgcgct ggtacaggtc gtccacggcg gggtcgacca
     4681 cggcgagcgc ccggatgagc gcgaacagcc ggctggcctc gcccgccact tcagcggaca
     4741 aggtggccca ggtgtgcacg atcgagcgcg catcgcctct ccgagcttcc tcgtcggccc
     4801 gttcctctgc gggccgactg ccacggcctt ccagggcgcg ccaccacgcc gcctcgagca
     4861 gacccagctt gccgccgaag ctcttgtaga tggtgtcgac cgacacctgg gagtctgccg
     4921 ccacggcagc cacggtcgtg gcggcatacc ccgcggtcag gaaccggtcc cgtgcggccg
     4981 cgatcgtccg cacccgtcgt gcttcggcgc tggctcggcg tccggtggcg tcgtacgcac
     5041 gacccttgac gtctggtggc gacaagcgga tcatcctcct tatccattcc agcatactgg
     5101 aactaaatag gagcccgcca tgcctgaccc tctggcgcta ccgacagcgg tgatcgaccg
     5161 actggtcgaa cggaccaacg cccacgacct ggaggggctg gtggcatcct tcgcgccgga
     5221 ctatgtcctg accaatcccg tgcacccgac ccgcgacttc gtcggctccg aacaggtccg
     5281 acggaactgg gcgggcctgt tcgccggggt tccggatctg gcggcctcgg tccgcagcat
     5341 ggtggccgac ggcgagcagg tgtgggtgga gatggctgtc gacggcatcc gtcaggacgg
     5401 ggtgccggtt cacctcgcgg gcgttcagat cttcacggtg agcgagggtc tgatccgcgc
     5461 ctgtcgtttc tacttcgagc ccgtcgaacc cgttggcgtc gacgctgacg gcgccatccg
     5521 ccaggcggtc ggccagccat gatcaccgtc gtcggcggta ccgggcggtt gggccgcgag
     5581 gtcgtggcct ccctactcgc gaaacagaag tcggtccgag tcgtgtcgcg ccacgccagg
     5641 tcacgcagtt ccgacggtga ctcgcgcctg gccggggcgg agttcgtcga cgccgatgtc
     5701 actgaccccg gtcaggcgcg ttcagccata gcaggcagta cgtatgtcgt ggccgccatg
     5761 accggcatgg acccacgaac cggcgccggc cctcaggccg ttgaccggga cggcgccatc
     5821 agcctgatcg acgccgccgc ggagaccggc tgccacgtcg tcctggtgtc cgtcgtcggt
     5881 gcggcggcag acagcccgat cgagctgttc cgagccaaat ggtccgccga ggcgcacctg
     5941 agagcgtcag atctgccctg gacgatcatc agggccacgg ccttcgccga actgtggtcc
     6001 gacatcctca acagctcggc ggggcgcgac ggccgggccc gtgtgttcgg cccggcccat
     6061 aacccgatga acttcgtcca cgtcgctgac gtcgcagccg ccgtcgtccg cgccatcgac
     6121 gagcgcacgc tggtcggtca gtgcgtcgag gtgggcggcc cggacaccct ttcgctcacc
     6181 gagctggcca cccgactcac cggacgggcg ccgaggcacc tgcccattgc gttggtccga
     6241 gccgtggccc tcggtgcgcg acccttcgct ccgggggtcg cccggatcgc gcgacaggct
     6301 ctcgccatgg aagaggtcga cctggcattc acagcggcga cgtaggtcgg cgacagcgcc
     6361 gacgaaggaa ccggcccgag agtcaagaca tccaggcatc agcgtttgga ttcccttgac
     6421 cctcaggaga tttgacatgc gactcaactc acgattctcg aagatcagct acgccgccgc
     6481 cggcctggtc gcaggcggag tgctggccac cacgctcggc gcccaagccg ccaccgtgtc
     6541 gccctccgcg acaacctcca ccacgagctc gagcacggcg accgctgacc cgcaccccgg
     6601 ggacaacggc gccgacggcg ttcccgaggc caacgaggtc cacggtgggg cgctcagtct
     6661 cagcggaacg gtgacggcgg tgagctcgtc gagcgtcacg atcaagacct ccaccgccac
     6721 gaccgtgtat gccgtgacca gctccagcga catcgacaag aacggcgagg ccactgtgtc
     6781 cgcactggtg gtcggcgaca aggtcacctt cagcgtcaac agcgccaatg cgaagcagat
     6841 cgacaagctg cacgccggtg acgagacgaa gaacaggccc accggagcgg cgccttcggg
     6901 accgtcgtcg aacgccggct gaccccgaaa gaacccgaag ggaggccctc gcccttgggc
     6961 gggggcctgc cttctcgccg cagacgtggg tggggcgtag tccatgagca tctggtgggc
     7021 ctgctgccgg gcttgtagcg tgccggcatg tctccgagtg ggtctgcgtc gggggtcccc
     7081 gccggtcgct tcgatgaggc caacgccagc gaaacaggga cctagatgcg tcacgcggtg
     7141 ctgggcgccg gaggtgtcgg gggcctgttg gcagccgcgt tggctcgctc cggcgaggac
     7201 gtcgtcctgc tcctgcgcga cgagacgtta cgccggtacc cggatcacct ccaggtcgac
     7261 agcgtcgtgc tcgggtcgtt cagcgccgag gtcgaagcaa cggcacggct tgagcgcccc
     7321 gtggacgtgc tgtgggtggc gaccaagtcc accgggctgg acgagagtct cgccgccgca
     7381 ccggcccagg cggtcggcca cgctctggtg gtcccgctgc tcaatggcct ggaccacgtg
     7441 gcgaggttgc ggcgcgacta cgacctggtg agtgcggcag ccattcgcgt ggagacggag
     7501 cggacggccc ccgggcgcat tcgccagctc tccccgttcc tcggggtgga gatctcgccc
     7561 gacccggacc ggccatcggc gcgggccgtc gtcgagcgcg cggccgcagc gctgacggct
     7621 gcgggggtgc ccaccacggt gcgcgatgac gagctggggg tgctctggga caagttcgcg
     7681 ctcttggctc ccctcgcctt ggccaccacc ggtctcgacg ccacgctcgg ggccgtccgc
     7741 gaggacgcgc ggttcgtggg ctgtcaggac gaggtcttcg agttggcgca ccgggagggg
     7801 gcttccaccg atccggaggc tgttcgacgt ctcgtgcgcg cggcaccgga cgacatgcgc
     7861 agctccatgc agaaggac
//
LOCUS       DASYFY010000089         4281 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1268191, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000089 DASYFY010000000
VERSION     DASYFY010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4281
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268191"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..384)
                     /locus_tag="VGN19_01705"
     CDS             complement(142..384)
                     /locus_tag="VGN19_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018768692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194630.1"
                     /translation="MNTTRRHTRWVPALGVALAFSTLVALPAAARPDPGPKPTTNQQA
                     TTSEGYCPLERIGRQLIRCDNLTGNGVSAPLWVPER"
     gene            550..3501
                     /locus_tag="VGN19_01710"
     CDS             550..3501
                     /locus_tag="VGN19_01710"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7194631.1"
                     /translation="MGAASAAQLVPLVGRGAEQGRVAALLEGVAQGTPGVLLVGGEAG
                     VGKTALVRDACARFSGQVLWGTCVHFAGTPVPFAAVVSALDGWLGAASGPERVEVLSG
                     LDALRALLPSSPSAGAVEPGLLLAQLDAALLRIAQRDPVVLVVDDLQWADPSTLDLLA
                     FLVTGLRSQRVGVIATVRDEDRPDGHLVNGWLADLRRIPPVSEVHLERLGEQDTADQV
                     EALLGPGGADAGLGARVYARSGGNPYLTELIAGEPVGAVSSSPVAEALRAALLLRWHG
                     LSETARGVTRVLAIGGRPVGVDVVEGVVGLLGERAAFGGDVREGLAEGVAAGVLAHPD
                     GGRVWFRHPLIAEILSGDATGPDPSSVHSAYAKVLARRGGSGPGDVASHHELAGEWSE
                     AYRWSLTAAQSTAAAQGAVEHLQHLQRACRLWSRVRGGTAPTGEYVDLLLRTSRAAQC
                     VAKPEQALSLIDEALLLTDRAVAPGLVCRLLTLRHRMQVEGEHLAWTEVTPALREAEQ
                     IAQSLPGTAERAIVDSQLAWTEIWAGHERGRDLADGALRTARATGSPDALIPALVVSS
                     LARPDACEALGWLEEAYALARASGDAAEMADAALGMHNLHQAHGQYAAALESGLRRGA
                     DLFVAGAPGVARFVLTSAAYFALCLGQWETAEASLRPALAAADGGHREAVARATMAVL
                     SARRGDLAAAQRQLGRAAQISTTRYMGSATYPYGAVELLLAQRKPELALDVVEAQIGA
                     VVLGDPRDCDELLLLGARAAAELAQDGRDRGQRDAAQMAQTRLRAVLAAGSGGGRSPF
                     TAWDDADLLTPAVRAMYEAELARLDDRPDQELCWASARGACQRAGLRWDEAVAACHEA
                     QAALRSGRPRAQAAELLRGAMSIAVELGAAPLRLSVETTAAAAHIALEPIAEASQSVP
                     EGRPWAGLTAREREVLRHVVVGRSNTEIAKALFISDKTVSVHISNILRKSGTTSRVEA
                     AAWATRLADAP"
     gene            3721..4047
                     /locus_tag="VGN19_01715"
     CDS             3721..4047
                     /locus_tag="VGN19_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194632.1"
                     /translation="MTLYLALALAIQLRAALSDQGPRGHGQQVFWVIVDVFLVYRITK
                     GSATAWFVELVLTGLPIALVLFAGFLSPLVIILLTTSVVQLALLLHPAIRRRVRMGRS
                     TAGATI"
     gene            complement(4040..>4281)
                     /locus_tag="VGN19_01720"
     CDS             complement(4040..>4281)
                     /locus_tag="VGN19_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194633.1"
                     /translation="GGSARALTTGAITVLAFPGQALRVSAAGCQLSAPVAAGTPCGRV
                     VVAWGDELSGVSSAVTGVRVDRGLAEPTLSWRLFR"
BASE COUNT          542 a         1401 c         1632 g          706 t
ORIGIN      
        1 ggaccagcgc acctggatgc tctctcgcgc cgaggaagat ccccgggctg cacggggctt
       61 cgtggtcgtg gaggcccccg ggccctcggg caacaagttt gctcgcctga gtccgcatgt
      121 ggcaccttcg ctggagtcgg gtcagcgttc ggggacccag agtggtgcgg agacgccgtt
      181 gccggtgagg ttgtcgcacc ggatgagttg ccgtccgatc cgctccaagg ggcagtagcc
      241 ctcgctggtg gtggcctgct ggttggtcgt tggtttgggg ccggggtccg ggcgggcagc
      301 ggccggcagt gcgacgagag tgctgaaggc gagcgcgacc cctagggcgg ggacccatcg
      361 ggtgtgacgt cgggttgtgt tcatggtggg ctccttgggt ggaggatctg accgtttcac
      421 cgtcccgccg cgtggcttgc gcccgcatcg gacgcttccc ctcagattcg gcagctagcc
      481 cctcagatgg accgggcgcg tgcctcacgg gtgggtgaca acggtgacgg gaggcgggac
      541 actgcgcgca tgggtgcagc ttcggcggct caactggtgc cgcttgtcgg ccgaggcgct
      601 gagcaggggc gcgtagcggc gttgcttgag ggggtcgcgc agggaacgcc gggggtgctg
      661 ctggtcgggg gtgaggccgg ggtgggcaag accgctttgg tgcgcgacgc gtgtgcgcgg
      721 ttctccgggc aggtgctgtg ggggacgtgt gtgcattttg cgggcacgcc tgtcccgttt
      781 gccgccgtcg tgtcggcgtt ggacgggtgg ctcggggcgg ccagcgggcc ggagcgggtt
      841 gaggtgttgt ctgggctcga cgccttgcgc gcccttctgc ccagcagccc ctccgcgggg
      901 gccgtcgaac ccgggctgct gctcgcccag cttgacgccg ctctcctgcg tatcgcgcaa
      961 cgtgacccgg tggtcctggt ggtggacgac ctgcagtggg cggacccatc gacgcttgac
     1021 ctgctcgcgt tcctcgtcac tgggttgcgg tcccagaggg tcggggtcat cgcgaccgtt
     1081 cgtgacgagg accgcccgga cggtcacctg gtgaacgggt ggctggccga ccttcgacgg
     1141 atcccgccag tcagcgaggt tcacctggag cgcctggggg agcaggacac cgccgaccag
     1201 gtcgaggccc tgctggggcc gggcggggcc gacgcggggc tgggcgcgcg ggtgtacgcc
     1261 cgttcgggtg gcaacccgta cctcaccgag ctcatcgcgg gtgagcctgt cggggcggtg
     1321 tcctcgagtc cggtggctga ggcccttcgt gcggcgctcc tgctgcgctg gcatgggctc
     1381 agtgaaacgg cgcgtggggt gacacgtgtc ctggcgatag gcggccggcc cgtgggggtc
     1441 gacgtggtcg agggcgtcgt cgggctcctc ggcgaacgcg cggcgttcgg cggtgacgtt
     1501 cgtgagggac tggctgaggg cgttgccgct ggtgtgctcg cccacccgga cggcggccgg
     1561 gtgtggttcc gtcacccgct cattgcggag attctgagcg gggacgcgac gggtccggat
     1621 ccgagctcgg tccattcggc gtacgccaag gtgctcgcac gtcggggcgg gtctgggcct
     1681 ggggacgtcg ctagtcacca cgagctggcc ggggagtgga gcgaggcgta ccggtggtcg
     1741 ctgaccgccg cacagtcgac cgccgcggcg cagggggctg tcgagcatct gcagcatctg
     1801 cagcgggcgt gccggctctg gtcgcgcgtc cgagggggga cggccccgac cggcgagtat
     1861 gtggacctgc tgctgcgcac cagccgcgcc gcccagtgcg ttgccaagcc cgaacaggcc
     1921 ctgtccctga tcgacgaggc gctgttgctt accgaccgtg cggtcgcccc gggcctggtc
     1981 tgcaggttgc tgacgttgcg gcaccgcatg caggtcgagg gcgagcactt ggcgtggacc
     2041 gaggtcactc ccgccctgcg cgaggcggag cagatcgcgc agtcgctgcc gggcaccgcg
     2101 gagcgggcca tcgtcgactc ccagctcgcc tggacggaaa tctgggcggg tcacgaacgc
     2161 ggtcgtgacc ttgcagacgg ggccctgcgg acggctcggg cgacgggctc gccggatgcg
     2221 ctcatccccg ccctggtcgt gagctcgctc gcccgcccgg acgcctgcga ggcgctgggc
     2281 tggctggagg aggcgtacgc gctggcccgc gccagtggcg atgcggccga gatggccgat
     2341 gcggccctgg gcatgcacaa cctgcaccag gcgcatgggc agtatgcggc ggcgttggag
     2401 tcgggcctgc gccggggcgc tgacctgttc gtggccgggg caccgggcgt cgcaaggttt
     2461 gtgctgacct cggccgcgta cttcgcgctg tgcctggggc agtgggagac ggctgaggcg
     2521 agcctgcgcc cggcgttggc tgctgctgac ggaggacacc gggaggccgt cgcccgcgcg
     2581 acgatggcag tcctgtccgc ccgccggggt gacctcgcgg cggcgcagcg ccagctgggc
     2641 agggcggcgc agatctccac gacgcggtac atgggctcgg cgacataccc gtacggggcg
     2701 gtggagcttc tgctggctca acgcaagccc gagctggccc tcgatgtggt ggaggcacag
     2761 atcggtgcgg tcgtcctggg cgacccgcgc gactgtgacg agctcctcct gctcggcgcc
     2821 cgtgccgcgg cagagctcgc gcaagacggg cgtgaccgcg ggcagcggga cgcggcccag
     2881 atggctcaga cgcgcctgcg tgctgtcctg gcggccgggt cgggcggcgg ccgtagcccg
     2941 ttcaccgcgt gggacgacgc ggatctgctc accccggccg tgcgggccat gtatgaggcg
     3001 gagctggcac gccttgacga ccgtcctgac caggagctgt gctgggccag cgcgcgcggc
     3061 gcctgccagc gagccgggct gcgttgggac gaggcggtgg ccgcctgcca tgaggctcag
     3121 gcggcgttgc ggtctggccg gccgcgggcg caggcggctg agctcctgcg tggggccatg
     3181 agcatcgccg tcgagctggg cgcagctccg ctgcgtctca gcgtggagac cacggccgca
     3241 gcagcccaca ttgccctcga acccatcgcg gaggcatcac agtcggtgcc tgaagggcgg
     3301 ccttgggctg ggctgactgc gcgcgagcgg gaagtgctgc gccatgtcgt cgtgggccgg
     3361 tcgaacacgg agatcgccaa ggcgctgttc atcagcgaca agacggtcag cgtgcacatc
     3421 tccaacatcc tgcgtaagtc cggcacgacc agtcgcgtcg aggcggcggc gtgggcgacc
     3481 cggctcgctg acgcgccctg accggccctc aacgtcaccg ggccggcccg cctgaccgga
     3541 ctgcccgtcg cccctctggc cccaaggttt gcggatcctc ttgatgagcc tccaggcacc
     3601 gtccgcgctt ggcgcgcctg tcacgacgtg tcatggttgt tctgtcgtgg gggcgatctg
     3661 gacgaaggcg gggaaatgcg gctgcaaatg cgttggtcaa agctgacggt ccggacgatc
     3721 gtgacgctgt acctcgccct ggcactggcg atccaactac gggctgctct gagcgatcaa
     3781 ggcccaaggg gtcacggcca gcaggtgttc tgggtgatcg tcgacgtgtt cctcgtctac
     3841 cggatcacca aaggctcagc cacggcatgg ttcgtcgagc ttgtgctcac cgggctcccg
     3901 atcgcccttg tgctcttcgc aggattcctg agccccttgg tgataatcct cctgaccacc
     3961 tcagtcgttc agctggcgct gctgctccat cctgcgattc ggcgtcgggt acgcatgggg
     4021 cgaagtacag cgggcgcgac tatctgaaca gtcgccagct caacgtcggc tcggcgagac
     4081 cccgatcgac cctgactcct gtgacggccg acgacactcc actcagctca tcgccccagg
     4141 caaccaccac tcgcccgcaa ggcgttcccg ccgcgaccgg agcactcagc tggcaaccag
     4201 ccgccgaaac ccgcagggcc tggcccggga aggccagcac cgtgatcgcc cctgtcgtga
     4261 gtgccctcgc tgagccaccc c
//
LOCUS       DASYFY010000090         1947 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1478236, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000090 DASYFY010000000
VERSION     DASYFY010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1478236"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1245
                     /locus_tag="VGN19_01725"
     CDS             <1..1245
                     /locus_tag="VGN19_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HEV7194634.1"
                     /translation="SRAHTAVKVDQKYHGPVVWVKDASRSVPVVAQLLSDEQRPALLE
                     AVTKDYDALRARHAAKSTERPLVSIEKARERHTPIDWSGYRPPVPHLVAQQEKELLRR
                     QSGAPNRSVTQFVRTFTDYSIEELRRYIDWGPFFLAWEMKGRFPDILHNPTTGETATK
                     LFEDANRMLDRIIEEKWLRANGVIGLFPANSVGDDIEVYTDESRQVVATTLHTLRQQG
                     QHREGVPNRAMSDFVAPRETGLSDHIGAFAVTAGLGSHDKIVEFKAAMDDYSAILLEA
                     LADRLAEAFAERLHERVRHDFWGYAPNEHLRNDDLIAEKYTGIRPAPGYPACPDHTEK
                     QLLWDLLQVEQNAGMELTESMAMWPGAAVSGWYFSHPQSQYFVVGRLGRDQIEEYAER
                     KGWTLREAERWLSPNLGYEPQE"
     gene            1311..>1947
                     /locus_tag="VGN19_01730"
     CDS             1311..>1947
                     /locus_tag="VGN19_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEV7194635.1"
                     /translation="MVPALSPSRASDFKQCPLLYRFRTIDKLSAPPSPAAARGTLVHA
                     VLERLFDLPAEQRTPEAAEALLAPQWAALVEQEPELAAMIADDELLTEETWFTQALAL
                     IQTWFGLEDPTRLEPAERELYVETEVDGLVLRGYVDRLDVASDGAMRVVDYKTGRSPS
                     ELFEGKALFQMKFYALVLWRLRGEIPTLLQLVYLGNGEVVRYSPDEHDLLSL"
BASE COUNT          325 a          653 c          663 g          306 t
ORIGIN      
        1 agccgggcgc acaccgcggt caaggtcgac cagaagtacc acggtccagt ggtgtgggtg
       61 aaggacgctt ctcgctcggt gcccgtcgtc gcacagctgc tgtccgacga acaacgaccc
      121 gccctgctcg aggcggtgac caaggactac gacgcgctga gggcccgtca cgctgccaag
      181 tcgaccgagc gtccgctggt ctcgatcgag aaggctcgcg aacggcatac cccgatcgac
      241 tggtccggct accggccgcc cgtgccgcac ctggtcgccc agcaggagaa ggagctgctg
      301 cgccgccagt ctggcgcgcc gaaccgctcg gtgacccagt tcgtccgcac cttcacggac
      361 tactcgatcg aagagcttcg ccgctacatc gactggggcc cgttcttcct cgcctgggag
      421 atgaagggtc gcttccccga catcctgcac aaccccacca cgggcgagac cgcgaccaag
      481 ctgttcgagg acgcgaaccg catgctggat cgcatcatcg aggagaagtg gctgcgcgcc
      541 aacggtgtga tcgggctgtt cccggcgaac tccgtcggtg acgacataga ggtctacacc
      601 gacgagtccc gtcaggtggt ggccaccacc ctgcacacgc tgcgccagca agggcaacac
      661 cgcgaggggg tgcccaaccg ggccatgtcc gacttcgtgg cgccgcgcga gaccgggcta
      721 tcggaccaca tcggtgcctt cgccgtcacc gcagggctcg gttcgcacga caagatcgtg
      781 gagttcaagg ccgcgatgga cgactacagc gcgatcctgc tggaggcact ggcggaccgg
      841 cttgccgagg cgttcgccga gcgcctgcac gagcgtgtgc ggcacgactt ctgggggtac
      901 gcgccgaacg agcacctgcg caacgacgac ctgatcgccg agaagtacac cggcatccgg
      961 cccgcgccgg gttatccggc ctgcccggac cacaccgaga agcagctgct gtgggacctc
     1021 ctgcaggtgg agcagaacgc gggcatggag ctgacggagt cgatggccat gtggcctggt
     1081 gccgcggtct cgggctggta cttctcgcat ccgcagtcgc agtacttcgt cgtcggccgc
     1141 ctcgggcgcg accagatcga ggagtatgcc gagcgcaagg gatggaccct gcgcgaggcc
     1201 gagcggtggt tgtccccgaa ccttgggtac gagccccagg agtgatcgac acggagtagg
     1261 gcggcctggg gcatgacagc cgtgtcggtg cggccgccta cggtgtggtc atggttccag
     1321 ccctctcccc gagccgcgcg tcggacttca agcagtgccc cttgctctat cgctttcgga
     1381 ctattgacaa gctgagcgca ccgccgagtc ccgcggcggc tcgtggcacc ctcgtgcacg
     1441 ccgtgctgga gcggctgttc gaccttccgg ccgagcagcg gactcccgag gctgccgagg
     1501 cactgctcgc gccgcagtgg gcggcgctgg tcgagcagga gcccgagctg gccgcgatga
     1561 tcgcggacga cgagctgctc accgaggaga cctggttcac ccaggcgctg gccctgatcc
     1621 agacgtggtt cggcctggag gaccccaccc ggctggagcc cgccgaacgt gagctgtatg
     1681 tcgagaccga ggtcgacggg ctggtcctgc gcgggtacgt cgaccgactc gacgtggcgt
     1741 ccgacggcgc gatgcgggtg gtcgactaca agacgggtcg gtcacccagc gagctcttcg
     1801 agggcaaggc cctgttccag atgaagttct acgcactggt gctgtggcgc ctacggggcg
     1861 agatcccgac gctgcttcag ctggtctatc tcggcaacgg cgaggtcgtc cgctatagcc
     1921 ctgacgaaca cgacctcctg agcctgg
//
LOCUS       DASYFY010000091         5644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_164434, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000091 DASYFY010000000
VERSION     DASYFY010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5644
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164434"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VGN19_01735"
     CDS             complement(<1..767)
                     /locus_tag="VGN19_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEV7194636.1"
                     /translation="MNALAARRRHPAAMALLILLGLLVTGVAYSVFAPRPAQASATGI
                     DQITAGRKLFLANCATCHGLQAQGTKVGPSLAGVGAAAVDFQVGTGRMPLAKPDVQAP
                     QENVRFNSDEIASLAAYVASLAPGPAIPDSQYTSGQGGDVALGGELFRVNCAMCHNFA
                     GSGGALTRGKYAPSLRDVSGQHIYEAMVSGPQSMPVFNDDNISPAGKNAIIAYLHAVD
                     KEENVGGMNLGNLGPVSEGLFAWVFGLGIMIAFAVWLG"
     gene            complement(841..1515)
                     /locus_tag="VGN19_01740"
     CDS             complement(841..1515)
                     /locus_tag="VGN19_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-copper oxidase subunit III"
                     /protein_id="HEV7194637.1"
                     /translation="MAHVATASAVTSESPRSAASIPGHGPVSRPNMVSVGTIVWLASE
                     LMFFAGLFAMYFTIRSVEPALWAKETHVLNVPYATVNTLILVISSVWCQLGVHAAEHG
                     KPHRGTGRLLSPKGWGMREWYVLTYVFGAIFVSGQVFEYSELTHENITLSANSYGSVF
                     YLTTGFHALHVTGGLIAFLLIIGRTFTTRHYSHAQAAGAVVTSYYWHFVDVVWIALFA
                     TIYLLK"
     gene            1658..2110
                     /locus_tag="VGN19_01745"
     CDS             1658..2110
                     /locus_tag="VGN19_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194638.1"
                     /translation="MTASHATAADVGPAGTPPARQISVLLYSDDRTIRDAVRVNVGRR
                     PARDVEVASWRECATAAAVIEAVEAGAFDLLILDGEATPVGGLGLCRQLKSEIFECPP
                     ILVLTGRPQDGWLATWSLADLAVPHPLDPIALAAAVAELGRRGRRGTA"
     gene            2114..3190
                     /gene="trpD"
                     /locus_tag="VGN19_01750"
     CDS             2114..3190
                     /gene="trpD"
                     /locus_tag="VGN19_01750"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEV7194639.1"
                     /translation="MTADPVSPTSPSSPTWPDLLSALLRREDLTTEQAAWAMQEVMSG
                     EATAVQLAGFLVALRAKGESVDELRGLADVMLAHANRIEVPEPSLDIVGTGGDRAHTV
                     NISTMAAVVIAACGIRVVKHGNRAASSSSGSADVLEALGVDLTLSPERVVKVAHEAGI
                     TFCFAQTFHPAMRHAAAARGGLGVGTAFNALGPLTNPAQPTYAAVGVADARLGPLMAG
                     VFAGRGKDAAVFRGDDGLDELTLSTTSTVWWVRGGTVTRRSLDPREVGLDYQPIESLR
                     GADAAHNAQVARDLFGGQRGPVRDAVVLNAGIALALSAPDRGDAQEDFVLGIREGMDR
                     AETALDSGAATRSLNAWATATQRS"
     gene            complement(3230..3514)
                     /locus_tag="VGN19_01755"
     CDS             complement(3230..3514)
                     /locus_tag="VGN19_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEV7194640.1"
                     /translation="MISAIVLINAEVDRIPEVAQAIAELDGVTEVYSVAGDADLIAMI
                     RVREHEQLNDVIADRLNKVKGVLGTNTHIAFRTYSSHDLEAAFSLGLDGD"
     gene            complement(3550..5268)
                     /locus_tag="VGN19_01760"
     CDS             complement(3550..5268)
                     /locus_tag="VGN19_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000027 - ribosomal large subunit assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEDD exonuclease domain-containing protein"
                     /protein_id="HEV7194641.1"
                     /translation="MQMVQGTFDDLGTALAAVTFVVVDLETTGGSPADSGITEIGAVK
                     VRGGEVLGEFQTLVNPHVPIPAFIQALTGITTAMVAQAPRIESALPAFLEFAQGSVLV
                     AHNAGFDIGFLKAACAAQGIEWPRFGVLDTVHLARALVPRDEARNHKLSTLAMLFSST
                     TTPDHRALHDARATVDVLHALIGRVGSLGVHTLEELSSYTGRVSPAQRRKRWLADGLP
                     GEPGVYLFKDDQGRILYVGTSINIKARVRQYFTASEQRTRMAEMVRLATSVTPVVCAT
                     TLEAEVRELRLIAAHKPPYNRRSKSPERATWVKLTVEAFPRLSIVREVRKDGASYIGP
                     FGSRASAEDAVAAVHEVIPLRQCVQRLSPTTRVGACMLADMGRCGAPCTGAQTVEEYA
                     EVAQDAVTALSGDSRRVVTALRTRMVTLSEQHRFEDAGALRDRLLALVRGMARVQRLA
                     PLAASPEIMAARPAVTGGWELICVRHGRLAATTVSPRGADPMPYVQALRDSAEVVLPA
                     PWPAPAATPEETEKVLRWLEQPGVRLVDLQGEWTCPVGGAGSARAQLEPQVTSRYEVA
                     GFVAAS"
     gene            5457..>5644
                     /locus_tag="VGN19_01765"
     CDS             5457..>5644
                     /locus_tag="VGN19_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194642.1"
                     /translation="MFIDCQSCPVRELHCDDCMVTALLAPAGSELPVDAAERAAVRRF
                     VDAGLVSAHEGATVTARR"
BASE COUNT          866 a         1870 c         2065 g          843 t
ORIGIN      
        1 ccgagccaga ccgcgaaggc gatcatgatg ccgagaccga agacccaggc gaacagaccc
       61 tcggagactg ggccgaggtt gccgaggttc atgccaccga cattctcctc cttgtcgacc
      121 gcgtgcaggt aggcgatgat cgcgttcttg ccggcggggg agatgttgtc gtcgttgaac
      181 accggcatgg actgcggacc gctgaccatg gcctcgtaga tgtgctggcc ggagacgtcg
      241 cgcaggctcg gcgcgtactt gccacgcgtg agcgcgccgc ctgagccggc gaagttgtga
      301 cacatggcgc agttcacccg gaacagctcc ccgccgaggg cgacgtcgcc accctgaccg
      361 ctggtgtact gggagtccgg aatggcggga ccaggcgcga gcgaggcgac gtaggccgcc
      421 agcgaggcga tctcgtcgct gttgaaccgc acgttctcct ggggtgcctg gacatcgggc
      481 ttggccagcg gcatacggcc ggtgccgacc tggaagtcca cggcagcggc acccaccccg
      541 gccaggctgg ggccgacctt cgtgccttgc gcctggagcc catggcaggt ggcgcagttg
      601 gcgaggaaga gcttgcggcc tgccgtgatc tggtctatgc cggtggccga ggcctgggcc
      661 gggcgcggcg cgaacaccga gtaggcgacg ccggtgacca gcaggcccag caggatgagc
      721 agggccatcg cggccgggtg tcggcgacgg gcggccaagg cgttcacggt gctgtcctgt
      781 cggtcggagc gggcagggct tgggcggggg cggttgatcg ggctgtggtc atccgatgac
      841 tcacttgagc aggtagatcg tcgcgaacag ggcgatccac acgacatcga cgaagtgcca
      901 gtagtacgag gtcaccaccg cgccggccgc ctgggcgtgg ctgtagtggc gggtcgtgaa
      961 ggtgcggccg atgatcagca ggaaggcgat cagaccgccg gtgacgtgca gcgcgtggaa
     1021 ccccgtggtc aggtagaaga ccgacccgta gctgttggcc gacagggtga tgttctcgtg
     1081 ggtcagctcg gagtactcga agacctggcc cgacacgaag attgctccga agacgtacgt
     1141 caggacgtac cactcgcgca tcccccagcc cttgggagag agcagtcgac ccgtgccgcg
     1201 gtggggcttg ccgtgctcgg cagcgtggac accgagctgg caccagaccg aagagatgac
     1261 gaggatcagc gtgttgaccg tggcgtacgg gacattgaga acgtgagtct ccttggccca
     1321 cagcgcgggc tccacggagc ggatggtgaa gtacatcgcg aacagcccgg cgaagaacat
     1381 gagctcactg gccagccaca cgatcgtgcc gacggagacc atgttgggcc gggagaccgg
     1441 accgtggccg ggaatgctcg ccgcggagcg gggggactct gaggtcactg cggatgctgt
     1501 cgccacgtgc gccattattg ccatattccc agcggggcac accgtcgacc ccccgttgtg
     1561 tgccccaccg tgcggaatca cacgtccgat ggcgcgcatg gtccgctctg cgaggcggcg
     1621 cccggcggtc cgcaggaccc ccggtagcat ctgctgcatg accgcttcgc atgcgaccgc
     1681 cgccgacgtc ggccctgcgg ggacgccccc cgctcgccag atctcggtgc tcctgtacag
     1741 cgacgaccgc accatccgcg acgcagtgcg cgtcaacgtg gggcgccgcc cggcgcggga
     1801 cgtcgaggtg gcctcgtggc gcgagtgcgc gacggcagcg gccgtgatag aggcggtcga
     1861 ggccggcgcc ttcgatctgc tgatcctgga cggcgaggcg actccggtgg gtggtcttgg
     1921 cctgtgccgt cagctcaaga gcgagatctt cgaatgcccg ccgatcctgg tcctcacggg
     1981 acggccgcag gacggctggc tcgcgacctg gtcgctggcc gacctggctg tgccacatcc
     2041 gctcgacccc atcgccttgg ccgccgcagt ggccgagctg ggtcggcgcg gccgtcgtgg
     2101 caccgcctag gccatgacgg ccgacccggt gagtccgacg agcccctcga gccccacttg
     2161 gcccgacctg ctgagcgcgc tgctgcgccg cgaggacctc accaccgagc aggcggcgtg
     2221 ggccatgcag gaggtcatgt ccggggaggc caccgcggtg cagctcgccg gcttcctggt
     2281 ggcgttgcgt gccaagggcg agagcgtgga cgagctgagg ggtctcgcgg acgtcatgct
     2341 cgcgcatgcc aaccgcatcg aggtcccgga gccgagcctg gacatcgtcg gcaccggtgg
     2401 cgaccgggca cacacggtca acatctccac gatggccgcg gtggtcatcg cggcctgcgg
     2461 catccgggtc gtcaaacacg gcaaccgggc agcctcgtca agctcggggt ccgccgatgt
     2521 cctcgaagcc ctcggggtcg acctgacgct cagcccggag cgcgtcgtca aagtcgccca
     2581 cgaagcgggc atcacgttct gcttcgcgca gaccttccac ccggcgatgc ggcacgcggc
     2641 tgcggcccgc ggagggctgg gggtgggcac cgcattcaac gccctcggcc cgctcaccaa
     2701 ccccgcacag ccgacgtatg ccgccgtcgg cgtcgccgac gcccggctgg gtccgctcat
     2761 ggccggcgtc ttcgccggcc gtggcaagga tgccgccgtg ttccgtggcg acgacggcct
     2821 cgacgagctg accctgagca ccacctccac cgtctggtgg gtgcgcgggg gcaccgtgac
     2881 gcggcggtcc ctcgatcctc gcgaggtcgg cctggactac cagcccatcg agtcgctgcg
     2941 gggcgccgac gctgcccaca acgcccaggt ggcccgtgac ctcttcggtg gccagcgagg
     3001 gccggtgcgc gatgcggtgg tactcaacgc cggcatcgcc ctggcgctgt cggctccgga
     3061 ccgcggtgac gcgcaagagg acttcgtgct cggcatacgc gaagggatgg accgcgccga
     3121 gaccgcgctg gactcggggg ctgcgacccg gtccctgaac gcctgggcga ccgcgacgca
     3181 gcgttcctag cacggtgggc cgcgccaacc tcggcggcct ggtgtcgcgt cagtcgccgt
     3241 cgagtccgag gctgaaggca gcttcgaggt cgtggctgga gtaggtgcgg aaggcgatgt
     3301 gggtgttggt cccgaggacg cccttgacct tgttgagccg gtcggcgatg acgtcgttga
     3361 gctgttcgtg ctccctgacc cggatcatgg ctatcagatc ggcatcgccc gcgacggagt
     3421 agacctcggt gactccgtcg agctcggcga tggcctgggc cacctcgggg atgcggtcga
     3481 cttcggcgtt gatgagaacg atggcggaga tcacaggatc aatctagctg gcgtggctgc
     3541 ccacgggtcc taggaggcgg cgacgaaacc ggcgacctcg tatcgggacg tgacctgcgg
     3601 ctcgagctga gccctggcgc tcccggctcc gcccaccgga caggtccact cgccttgaag
     3661 gtcgacgagg cgcacccccg gctgctcgag ccagcgaagg accttctcgg tctcctcagg
     3721 cgtcgcggcg ggtgccggcc acggggccgg caggacgacc tcggcactgt cacgcaacgc
     3781 ctgaacgtag ggcatgggat cggcgccccg aggtgacacc gtggtagccg cgaggcggcc
     3841 gtgccggacg cagatcagct cccagccacc ggtcaccgcc ggtctggcgg ccatgatctc
     3901 gggactggcg gccagtgggg ccagtcgctg cacccgggcc atcccgcgca ccagagccag
     3961 gagccggtcg cgcagggccc cggcgtcctc gaagcggtgt tgctccgaca aggtgaccat
     4021 gcgggtccgc aatgccgtga cgacgcgacg agagtccccg gacagggccg tcacggcgtc
     4081 ctgggcgacc tcggcgtact cctcgacggt ctgcgcaccc gtgcacgggg ctccgcagcg
     4141 ccccatgtcg gccaacatgc aggcgcccac cctggtcgtg ggggacagtc gttggacgca
     4201 ttggcgcagt gggatgacct catggaccgc cgcaacggcg tcctctgcgc tggcgcgact
     4261 gccgaacggg ccgatgtagc tcgcgccgtc cttgcgcacc tcacgcacga tggacagccg
     4321 ggggaaggcc tcaacggtga gcttgaccca ggtcgcgcgc tcgggcgact tggagcgccg
     4381 gttgtagggg ggtttgtgcg cggcgatcag gcgcagctcg cgaacctcgg cctccaaggt
     4441 ggtggcacag accaccgggg tgacgctggt ggccagacgc accatctcgg ccatccgggt
     4501 gcgctgctcg gaggcggtga agtactggcg gacccgtgcc ttgatgttga tcgaggtgcc
     4561 gacgtagagg atccggccct ggtcgtcctt gaagaggtag acgccgggct cgccgggcag
     4621 cccgtcggcc agccagcgct tgcggcgctg agccgggctc acgcggcccg tgtagctgga
     4681 cagctcctcg agggtgtgga cgcccaggct gcccacgcgc ccgatgagag cgtgcaacac
     4741 gtcgacggtc gctcgtgcgt cgtgcagcgc ccgatggtcg ggagtcgtgg tggagctgaa
     4801 cagcatggcg agggtggaga gcttgtggtt gcgggcctcg tcgcggggca ccagggcgcg
     4861 ggcgaggtga accgtgtcca gcacgccgaa cctcggccac tcgatgcctt gagcggcaca
     4921 ggccgctttg agaaagccga tgtcgaagcc tgcgttgtgg gccaccagga ccgagccctg
     4981 ggcgaactcc agaaaggcgg gtagcgccga ctcgatgcgc ggcgcctggg ccaccatggc
     5041 ggtcgtgatg ccggtcaggg cctggatgaa cgccgggatc ggcacgtggg ggttgaccaa
     5101 ggtctgaaac tcgccgagca cttcgccgcc gcgcaccttg acggcgccga tctcggtgat
     5161 gcccgagtcg gccgggctcc cgccggtggt ctccaggtcg accacgacga aggtgacggc
     5221 ggccagggcc gtccccaagt cgtcgaaggt gccttggacc atctgcatgt ccctgacggt
     5281 aggcggcagg ggtgacagcc cttcgcaggc gcaccgcgcg aaaccaccgt gcacctgtcg
     5341 gcaaccggct gtcggtgggc cctcgtaacg tcgtgggcag gtcgaaacac gacagaccag
     5401 ctgcaggccc gaaaggggcc cgcctggcac gacgtcaggg aagagaggtg accgcgatgt
     5461 tcatcgactg ccagagctgc cccgtgcggg agctgcactg cgacgactgc atggtgacgg
     5521 ccctgcttgc gcccgcgggg tccgagctgc cggtcgacgc cgcggagcga gcggcggttc
     5581 gccgcttcgt ggatgccggt ctcgtcagcg cccacgaggg tgcgacggtg acggcgcgac
     5641 gcga
//
LOCUS       DASYFY010000092         1983 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1268524, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000092 DASYFY010000000
VERSION     DASYFY010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268524"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1713)
                     /locus_tag="VGN19_01770"
     CDS             complement(<1..1713)
                     /locus_tag="VGN19_01770"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7194643.1"
                     /translation="MDTYAGGFPAAGWYQLTGKSRGAFRAVLGGHGLLELYAVDSTGV
                     RSSVGRWRAEGDERVVEAQFRLDTGSEWVWVELRADAEAVGRGEQHATPVEGCWLDSG
                     AYWIEGAPRTVSIGVALTTVDRPKSCLAVLQALADVPSDVLARVVVVDHGAAVLTDAE
                     GYESVSLRLGARLEVVRQPNLGGSGGFSRGMHEVLAARPGSAGPGVTHVLLLDDDIIL
                     DPEVVERGAAATALGYDGLLGAHMLYTSDPTVLHSTGEIIRRDAFIWRTPADGLERVD
                     VAACTPSQTAPLRRAHHVGYSGWWWCLVPASVLRSTGLAMPFFIKWDDVELGLRAQRL
                     GWPTHTLPGIGVWHVPWVDKDTAVDWQVFFLTRNRLVTAALHGPRVPLRLLAGIAARG
                     VEHDLTMAYSAAELTIEGLDAFLEGPQGLLSEQSEGLSLVIDRQRRFAAQNVRDHAGA
                     GEALGAETSGKVRLGHTAARRRGSGLGALAPILMRAFIWAPIRREAVTVPLSEARPNC
                     LGTVDVAHVVSPTGLASGTRRRDRSVARHQSVRILSTTARILVTWPRLQRQYRAQARR
                     LTSVA"
BASE COUNT          321 a          700 c          684 g          278 t
ORIGIN      
        1 cgcgaccgag gtcaaccgcc gagcctgggc gcggtactgg cgctgcagcc tcggccaggt
       61 gaccaggatc cgggctgtcg tcgagaggat gcgaaccgac tggtgtcggg ccacggaccg
      121 gtccctgcga cgggtgccgg acgcgaggcc cgtggggctg acgacatgcg cgacgtcgac
      181 cgtcccgagg cagttcggcc tggcctccga gaggggcacg gtgacagcct cccggcggat
      241 cggggcccag atgaatgccc tcatcaggat cggagcaagg gctccgagtc ccgacccgcg
      301 tcgacgcgct gcggtgtgac cgagccgcac cttgccgctc gtttccgccc cgagcgcctc
      361 gccggcgccg gcgtgatcgc gcacgttctg cgcggcgaac cgtcgctggc ggtcgatgac
      421 gagcgacagt ccttcggatt gctcggacag cagcccctgc gggccttcga ggaacgcatc
      481 gagcccctcg atggtcagct ctgctgccga gtaggccatc gtgaggtcgt gctccactcc
      541 gcgagcagcg atccccgcca ggagtcgtag gggtacacgc gggccgtgca acgctgcggt
      601 gaccagacgg ttgcgggtca ggaagaagac ctgccagtcg acggccgtgt ccttgtcgac
      661 ccagggaacg tgccagacgc cgatcccggg gagggtgtgg gtgggccagc cgagacgctg
      721 cgctcgaaga cccagttcga cgtcgtccca cttgatgaag aacggcatgg ccagcccggt
      781 gctgcgcagc acgctcgcgg gcaccagaca ccaccaccag ccggagtagc ccacgtgatg
      841 ggcccggcgc aacggggcgg tctgggacgg cgtgcaggcg gccacgtcga cgcgctcgag
      901 accatccgcg ggagtgcgcc agatgaaggc gtcccggcga atgatctccc ccgtcgagtg
      961 cagcacggtg gggtcgctcg tgtagagcat gtgggccccc agcaggccgt cgtagccgag
     1021 ggcggtcgcg gccgcaccgc gctcgacgac ctccggatcg aggatgatgt cgtcgtccag
     1081 aaggagcaca tgcgtcaccc cagggccggc tgatcctggg cgagccgcaa gtacctcatg
     1141 catgccacgc gagaaaccgc cggagccgcc gagattgggc tgccggacca cctcaagcct
     1201 ggcccccaac cgcaaactca ccgactcata cccctcggcg tcagtgagga ctgcggcgcc
     1261 gtggtcgacg accacgaccc gggccagcac gtcgctgggg acgtctgcca aggcttgcag
     1321 caccgcgaga caactcttgg gacggtccac ggtcgtgaga gccacgccga tgctgaccgt
     1381 ccggggcgca ccctcgatcc agtatgcgcc agagtccagc cagcacccct cgacgggcgt
     1441 ggcgtgctgt tcaccacggc cgaccgcctc cgcgtctgcg cgcagttcga cccagaccca
     1501 ttcgctcccg gtgtcgaggc gaaactgagc ttcaaccacg cgctcatcac cctcggcgcg
     1561 ccaccggccg acagagctcc ggacgcccgt gctgtccacg gcatacagct cgaggagacc
     1621 gtgtccaccc agcacggctc ggaaggcgcc gcgtgacttc ccggtcagct ggtaccaacc
     1681 agccgctggg aagcctccgg cgtaggtgtc catgtcgagt cgctcgcctg gtccgaggac
     1741 gtgtcgtacc cgctgaatcc cgtcggaagg accgcggagg tacacagccg cggcgccctc
     1801 gggaccactg ggcggtgcgc tcaagcaccg ctgagcccgg acccatccgg ggaggtcacc
     1861 atgggagccg ttgcggcctc cggtgttgct ggcgtctgtg ccggacgcca tgtcagctcg
     1921 cggccggccg ctgagtggcg ccgcagcgcg cctcttgcgc cagtcgccct tgcaagacgt
     1981 aga
//
LOCUS       DASYFY010000093         3270 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1215736, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000093 DASYFY010000000
VERSION     DASYFY010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1215736"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..390
                     /gene="clpS"
                     /locus_tag="VGN19_01775"
     CDS             100..390
                     /gene="clpS"
                     /locus_tag="VGN19_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HEV7194644.1"
                     /translation="MSIAPVEQQQAATDELTEVDLPWITLVWNDPVNLMSYVTYVFQT
                     YFGYSKSKAERLMLDVHTKGRAVVSTGTRERMETDTEALQGYGLWATFQKDS"
     gene            392..1039
                     /locus_tag="VGN19_01780"
     CDS             392..1039
                     /locus_tag="VGN19_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2017 domain-containing protein"
                     /protein_id="HEV7194645.1"
                     /translation="MARGFKRRDGRYVAKLDAVERGLVVGLMEQVLELVEPERAEKND
                     SGDAGDEFDQIVAGLGGIGMGVSLSAADQVPELSGEVPAPRDPALDRIFPTANREDEQ
                     LAAEFRRLTEDGLRARKSANLATAIAALAATAGGGSRDQRVRLEEPQAVALLVALTDV
                     RLVLGERLGLRQDDDLELIEEEVSGLQEDDPAVYALAVYDFLTWLQETLAHALAP"
     gene            1139..1963
                     /gene="murI"
                     /locus_tag="VGN19_01785"
     CDS             1139..1963
                     /gene="murI"
                     /locus_tag="VGN19_01785"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEV7194646.1"
                     /translation="MSDAPIGIFDSGYGGLTVARAVLDQLPHESIAYFGDTARAPYGP
                     RPIAQTREFALECLDRLVDHGVKALVIACNTASAAVLHDARERYAVPVVEVIRPAVRR
                     AARATRNHRVGVIATQGTHQSGAYVDAFAAAPHLDVTSVPCPRFVEFVESGQTSGSEV
                     IEVARGYLQPLVEHDVDTLVLGCTHYPLLAGAISYVMGDNVTLVSSADETAKDLYRVL
                     ADADALRPAELPAPSHGFTTTGDAEEFRALARRFLGPEVGDVYGNSTVRTVLVVGS"
     gene            1960..2727
                     /locus_tag="VGN19_01790"
     CDS             1960..2727
                     /locus_tag="VGN19_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7194647.1"
                     /translation="MRLTVVGCSGSFAGPTSPASCYLLRAEHDGRTWSILLDLGSGAL
                     GPLQRHVDPAVLDAILVSHLHPDHCVDICGLYVMRKYRPSGAVPGRLPVYAPAGAEQR
                     FALMYHGLEHEGMTAELEVQELADTQVNVVGPFTITAYRVNHPVEAYGFRVEADGAVL
                     AYTGDTDSCDALTPLLTVADLALVDSAFVDGRDEVAGIHLSGSRAAKAAAEAGGVRRL
                     MLTHLPPWNDPEVCRGQAAAVWSGPVDLAVADETYEV"
     gene            2731..>3270
                     /locus_tag="VGN19_01795"
     CDS             2731..>3270
                     /locus_tag="VGN19_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7194648.1"
                     /translation="MAKTPAILVAPQVWRIPLVGDFVNGFMLRDADGQVTLIDMGIKS
                     SGAKVMAALTSIGSGPSDVTRLVLTHAHPDHAGGAAHVARQTGKGFAIHEADAQAASS
                     GKSPPRDPATRLGRLTNRLGGGGFDPVPVEETFTDGQILPIAGGVEVIHTPGHSPGHA
                     SFLLRESGVLITGDAIFNVR"
BASE COUNT          483 a         1147 c         1142 g          498 t
ORIGIN      
        1 tgcggagggc ggcctccacc atggtcagct catagtggtc ggtgagcagg gcggtactgg
       61 ggggtcgagt ggccaccagc gcagcctaag gtgggagccg tgtccatcgc ccccgttgag
      121 cagcagcaag ccgccaccga tgagctcact gaggtcgacc tcccgtggat cacgctggtg
      181 tggaacgacc cggtcaacct gatgtcgtac gtcacctacg tgttccagac ctacttcggc
      241 tactccaagt ccaaggcgga acggctgatg ctggacgtgc acaccaaggg ccgcgccgtc
      301 gtgtcgaccg ggacccgcga acgcatggag accgacaccg aggcactcca gggctacggc
      361 ctgtgggcca ccttccagaa ggacagctga ggtggctcga gggttcaagc ggcgcgacgg
      421 ccggtatgtc gccaagctcg acgccgtcga gcgtgggctc gtcgtggggc tcatggagca
      481 ggtgctcgag ctcgtcgaac cggagcgagc ggagaagaat gacagcggcg acgcaggtga
      541 cgagttcgac cagatcgtgg ccgggctcgg cggcatcggc atgggggtgt ccctgtcggc
      601 cgccgaccag gtgcctgagc tgagcgggga ggtcccggcg ccccgggacc cggcactcga
      661 tcgcatcttt cccaccgcca accgtgagga cgagcagctg gcggccgagt tccgccgcct
      721 gaccgaagac gggctgcgcg cccgcaagtc cgccaacctg gccactgcca tcgcggccct
      781 ggccgccact gccgggggag gctcgcggga ccagcgggtc cggctcgagg aacctcaggc
      841 ggtcgccctg ctggtggcgc tgacggacgt gcgcctggtg ctcggcgagc ggctcggcct
      901 gcggcaggac gacgacctgg agctgatcga ggaggaggtg tccgggctgc aggaggacga
      961 ccccgcggtc tatgcgctgg ccgtgtacga cttcctgacc tggctgcagg agacgctggc
     1021 ccacgcgctc gcgccgtgac ctgtggggct gaccttcgag cctgcttcaa gcccaatgtg
     1081 accgaccaga cgtgcggccg acggggtgac cgggtcgcca cccgcctagc cttagcccgt
     1141 gagtgatgca cccatcggca tcttcgactc cggctacggg gggctgaccg tcgcccgtgc
     1201 ggtgctcgac cagctcccgc acgagtccat cgcctacttc ggggacaccg cgcgggcacc
     1261 gtacgggccg cgacccatcg cccagactcg cgagttcgcg ctcgaatgcc tcgaccgcct
     1321 cgtcgaccac ggcgtcaagg ccctcgtcat cgcctgcaac acggccagtg cggcggtgct
     1381 gcacgacgcc cgcgagcggt atgccgtgcc cgtggtcgag gtcatccggc cggcggttcg
     1441 ccgggccgcc cgggccactc gcaaccaccg cgtcggggtc atcgccacgc agggtacgca
     1501 ccagtcgggt gcctatgtcg acgcgttcgc cgcagcgccg cacctggacg tgaccagcgt
     1561 gccgtgcccg cgcttcgtgg agttcgtcga gagcggccag acctccgggt ccgaggtcat
     1621 cgaggtggct cgcggctacc tgcaaccgct ggtcgagcac gacgtggaca ccctggtcct
     1681 gggctgtacc cactacccgc tgctggccgg cgcgatctcc tacgtcatgg gcgacaacgt
     1741 gacgctcgtg tcgtccgccg acgagaccgc caaggatctc taccgcgtgc tggccgacgc
     1801 ggacgcgcta cgcccagccg agctgccagc cccgagccat ggcttcacca ccaccggcga
     1861 cgcggaggag ttccgcgcct tggcgcgacg gttcctcggt ccggaggtcg gcgacgtcta
     1921 cggcaactcg accgtgcgca cggtcctggt ggtcggctcg tgaggctcac ggtggtcggg
     1981 tgttccgggt ccttcgcggg accgacctcc ccggcgtcgt gctatctcct gcgagccgag
     2041 cacgatgggc ggacctggtc gatcctgctc gacctgggca gcggggcgct ggggccgttg
     2101 cagcgccacg tcgaccccgc ggtgctcgat gccatcctcg tcagccacct gcaccccgac
     2161 cactgtgtcg acatctgcgg gctgtacgtg atgcgcaagt accgtcccag cggcgccgta
     2221 ccggggcgct tgccggtcta tgcgcccgcc ggtgccgaac agcgcttcgc gttgatgtac
     2281 cacggtctcg agcacgaggg catgaccgcc gagctcgagg tgcaggagct ggctgacacc
     2341 caggtgaacg tcgtcgggcc cttcacgatc acggcatacc gggtgaacca ccctgtcgag
     2401 gcctatggct tccgcgtgga agcggacggg gcggtactgg cctacaccgg cgacactgac
     2461 agctgcgatg cgctgacccc gctgctcacc gttgcagacc tcgcgctggt cgacagtgcc
     2521 ttcgtcgacg gccgcgacga ggttgctggg atccacctgt cggggagccg cgccgcgaag
     2581 gcggcggctg aggcgggcgg cgtgcgtcgc ctgatgctca cccacctccc cccgtggaac
     2641 gaccccgagg tatgccgcgg ccaggctgcc gctgtctggt cgggtccggt ggacctggcc
     2701 gttgccgacg agacctatga ggtgtgactg atggccaaga ctccagcgat cctcgtggcc
     2761 ccgcaggtgt ggcgcattcc cctggtcgga gacttcgtca acggcttcat gctccgcgac
     2821 gcggacgggc aggtcaccct gatcgacatg gggatcaagt cctccggggc caaggtcatg
     2881 gccgccctga cctcgatcgg gtcgggaccc agcgacgtga cccggctggt cctgacccac
     2941 gctcaccccg accacgcagg cggggcggcg cacgtggcac gccagaccgg gaagggcttc
     3001 gcgatccacg aggcggacgc gcaggccgcc tccagcggga agtccccgcc gcgcgatccg
     3061 gccacccgcc tcggcaggct gacgaaccgg ctgggcggcg gcggcttcga ccccgtgccg
     3121 gtcgaggaga cgttcacgga cgggcagatc ctgcccatcg ccggtggcgt cgaggtgatc
     3181 cacacgccag ggcactcacc gggccatgcg tcgtttctcc tgcgcgagtc cggggttctc
     3241 atcaccgggg acgcgatctt caacgtgcgc
//
LOCUS       DASYFY010000094         2920 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_637472, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000094 DASYFY010000000
VERSION     DASYFY010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2920
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_637472"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VGN19_01800"
     CDS             complement(<1..234)
                     /locus_tag="VGN19_01800"
                     /inference="COORDINATES: protein motif:HMM:NF025052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7194649.1"
                     /translation="MDGVLPGQRGQPGRPGQPCAEGRQLSRSTAFPDPALVVLVGPSG
                     CGKSTWASTRYRGPEVVSSDALRAIVGSGEDDLD"
     gene            complement(159..548)
                     /locus_tag="VGN19_01805"
     CDS             complement(159..548)
                     /locus_tag="VGN19_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194650.1"
                     /translation="MSEGRLAQVAQRAVDLDRAAAFYAKLLGSGPVARFDPPGLVFFR
                     LSGGTRLLLDAGAPTALLYLLVDDVGRSVQQLRADGVRIESEPHVIFSHVDDSLGPAG
                     SDEWMAFFRDSEDNLVGLVSHAPRADS"
     gene            complement(545..1441)
                     /locus_tag="VGN19_01810"
     CDS             complement(545..1441)
                     /locus_tag="VGN19_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013118140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7194651.1"
                     /translation="MQQFTRGDLSFDVTDAGPADAEVIVLLHGWPQDRHTFDPVIPLL
                     TAAGYRALAFDQRGYSPGAQPTSTSSYAMAELVADVLGLLDAASVSQAHLVGHDWGGA
                     VAWAVAERAPDRLASLTVLSTPHPRAMLQALQHPDQLLKSWYMLAFQVPALPEAVLGA
                     TLATVLQRSGLPAFESHRYAARFRNGDTATGSLAWYRAMGAAEARRAARRVRGILPTG
                     SGSTPDADPHITVPTTLVWGRHDTALGRRGTLGTAQWVSGPYRLVELDAGHWLPETRP
                     REVVAAILDRVGGEAAGEPGTP"
     gene            1492..1941
                     /locus_tag="VGN19_01815"
     CDS             1492..1941
                     /locus_tag="VGN19_01815"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7194652.1"
                     /translation="MRTFRFEHQWAFDAPARCVFGALADVEAYASWWPQVRRVERIDE
                     ESGRTAIRSFLPYTLDLVLRRVVQDEATGTLRVEVHGDLEGWCQWVVRPDGAGSVAQF
                     EQEARVTPTLLARSAPLAAPLLKANHAWMMRRGHAGLVERLAMQSCH"
     gene            1983..>2920
                     /locus_tag="VGN19_01820"
     CDS             1983..>2920
                     /locus_tag="VGN19_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194653.1"
                     /translation="MTSRGRQYPLGGRAAWTVYAASVAIYVLAVFHRSSLGVAGLLAT
                     ERFHIAATQLSVFTMVQLLVYAAMQIPVGVLLDRFGPKRLLLSGVAIMTVAQLGFAFV
                     DSFPAGILARVLVGMGDSMVFVPLLRLVSLWFPPLRIPMVSQLTGLLGQVGALVAASP
                     LVYALHRWGWTPSYASAAGLGVVLGLLALVVVRDSPNPDHELDDIKVRAVARAVQAAW
                     RTPGTRLGLWSHFSAQFGATVFALLWGYPFLVAGQGLSPSTAGRLLMLMTVTTVVTSP
                     LIGGFVTKYPFSRSTLILGIVGAIMAVWAVVLLWPGR"
BASE COUNT          364 a         1037 c         1051 g          468 t
ORIGIN      
        1 gtccagatcg tcctcgccgc tgcccacgat ggctcgcagg gcatcggacg acacgacctc
       61 gggcccccgg tatcgcgtcg aggcccaggt ggacttgccg cagccgctcg ggccgacgag
      121 cacgaccagg gcagggtccg ggaacgccgt ggacctgctc agctgtcggc cctcggcgca
      181 tggctgacca ggccgaccag gttgtcctcg ctgtcccgga agaacgccat ccactcgtcc
      241 gaaccggctg gcccgaggga gtcgtccacg tggctgaaga tgacgtgcgg ctcgctctcg
      301 atccgcacac cgtccgcccg cagctgctgc accgaccggc ccacgtcgtc gaccagcagg
      361 tagagcaagg cggtcggagc gcctgcgtcc aggagcaggc gggtgccccc gctgaggcgg
      421 aagaacacca gccctggtgg gtcgaaacgc gccactggcc cggacccgag aagcttggcg
      481 tagaacgccg cggcccgatc gaggtccacg gcgcgctggg ccacctgggc cagccttccc
      541 tcgctcatgg cgtgcccggc tcgccggccg cctccccgcc gaccctgtcg aggattgccg
      601 cgacgacctc gcgtggccgg gtctccggca gccaatggcc cgcgtcgagc tccacgaggc
      661 ggtagggccc actgacccac tgcgcagtgc ccagcgtccc cctccggccg agggccgtgt
      721 cgtgcctgcc ccagaccagc gtggtcggca ccgtgatgtg cgggtccgcg tcgggggtcg
      781 atccggaacc ggtcgggagg atgccgcgca cccgccgggc cgcgcgccgg gcctcggcgg
      841 cgcccatcgc ccggtaccac gccaagctcc ccgtggcggt gtcgccgttg cggaaccgcg
      901 cggcataccg gtgcgactcg aaggccggca ggccactgcg ctgcaacacg gtggcgagtg
      961 tggcccccag aacggcctcg gggagcgcgg gaacctggaa ggccaacatg taccagctct
     1021 tgaggagctg gtcggggtgc tgcagggcct gcagcatggc gcgggggtgc ggcgtggaca
     1081 ggacggtcag tgaggcgagc cggtctgggg cccgctcggc cacggcccag gccacggctc
     1141 cgccccagtc gtggcccacg aggtgggcct ggctcacgct ggccgcgtcg agcagcccca
     1201 gcacgtccgc taccagctcc gccatggcgt agctggacgt ggaggtcggc tgggcgccgg
     1261 gcgagtagcc gcgctggtcg aaggccaggg cgcggtagcc ggccgccgtc agcagcggga
     1321 tgaccgggtc gaaggtgtgg cggtcctgag gccatccgtg cagcagcacg atgacctcgg
     1381 cgtcggccgg gccggcgtcg gtgacgtcga agctgaggtc gccgcgggtg aactgctgca
     1441 cggctcgaat ctactcggtg ggctcaccgg ggtgacccga cacaatgaac cgtgcgcacc
     1501 ttccgtttcg agcatcagtg ggccttcgac gccccagcgc gctgtgtctt cggtgcgctc
     1561 gccgacgtcg aggcgtacgc atcatggtgg ccgcaggtcc gtcgggtgga gcgcatcgac
     1621 gaggagtccg ggaggacggc tatccgtagc ttcctgccgt acacgctcga cctcgtcttg
     1681 cgtcgtgtgg ttcaggacga ggcgaccgga accctgcgcg tcgaggtcca cggtgatctc
     1741 gaggggtggt gccagtgggt cgtgcggcct gacggcgccg ggtcggtcgc gcagttcgag
     1801 caggaggcgc gggtgacccc gacgttgctg gcccggtccg ccccactggc cgcgcccctg
     1861 ctgaaggcca accacgcgtg gatgatgcgc cgcggccatg ccgggctcgt cgagcgcctc
     1921 gcgatgcagt cctgccacta gcccgaggtc gccgaccggc agcggtacgc gacaatgacg
     1981 ccgtgacgag tcgtggccgc cagtaccccc tcggcggacg cgccgcctgg accgtctatg
     2041 ccgcgtcggt cgccatctac gtgctcgcgg tcttccatcg cagctccctt ggtgtcgccg
     2101 ggctgctggc cacggagcgg ttccacatcg ccgccaccca gctgtccgtc ttcacgatgg
     2161 tccagctgct ggtctacgcg gccatgcaga tcccggtcgg cgtcctgctg gaccggttcg
     2221 gccccaagcg gctgctcctg tccggggtcg cgatcatgac cgtggcgcag ctggggttcg
     2281 ccttcgtcga ctcgttcccc gccggcatcc ttgcgcgggt cctggtgggc atgggggact
     2341 ccatggtctt cgtccccttg ctgcgcctgg tgtccctgtg gttcccgccg ctgcgcatcc
     2401 cgatggtgtc ccagctgacc ggcctgctcg gacaggtggg cgcgctggtg gcggcctctc
     2461 cgctggtgta cgccttgcac cggtggggct ggactccgtc ctacgccagc gccgccggac
     2521 tgggcgtcgt gttggggctg ctggcgctgg tcgtcgtccg cgactcgcct aacccggacc
     2581 atgagctcga cgacatcaag gtccgggccg tcgcgcgggc ggtccaggcc gcttggcgca
     2641 ccccaggtac tcggcttggt ctgtggtcgc acttctccgc ccagttcggc gcgacggtgt
     2701 tcgccctgct ctggggctat ccgttcctgg tggcgggtca aggtctgtcg cccagcaccg
     2761 ccgggcggct gctgatgctc atgaccgtga cgacggtggt caccagcccg ctgatcgggg
     2821 gcttcgtcac gaagtacccg ttctcgcggt ccaccctgat cctcggcatc gtgggcgcca
     2881 tcatggccgt ctgggccgtc gtgctgctgt ggccggggcg
//
LOCUS       DASYFY010000095         2760 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_637489, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000095 DASYFY010000000
VERSION     DASYFY010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_637489"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1453
                     /locus_tag="VGN19_01825"
     CDS             <1..1453
                     /locus_tag="VGN19_01825"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEV7194654.1"
                     /translation="LGSIALLQTGLFLRPGYNESPFLDEGLYLYMGHRMIDHLLHGTY
                     LMEDPGKYFSGAPGLYPVLAALGDSVGGVQGARAVSLIGVIGAMVGVFGFTRVLFGRT
                     AGLFAALTFATFGSVIYQSHLAVYDSWMMMFVAFAAWLTVYSVAHDGFAWSPVVGVLL
                     TLAFFTKYAGAVYVPIVALVAIAVGWRQFHWLIVRRALYMVATAVVTAFFILAVWGSS
                     LYEGIETTTTSRTILLPVPPAELFRESVGWLGPSLLLAALGAVLAGRQHWRLSVVLLL
                     GSVVGVTQQIHIGEGVSIYKHIAFGMVFASPLIGYLFARVVRHLRWLTIPAVAVVSGL
                     LLVVGMSNAQFWLTNWPQDQALVSSLRPAIALNPGKEILAEEGTPERYALRGVIAPAQ
                     YSDTYYLSYQGLTGVPAYKAAIDQVYFGVIYLDGVTPAGHWISQYLANNDTEYVQRES
                     VPRYAHGQLTGYWVVYVPKVSEHLPSGTTTGAR"
     gene            1492..1617
                     /locus_tag="VGN19_01830"
     CDS             1492..1617
                     /locus_tag="VGN19_01830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194655.1"
                     /translation="MRSDIHHRIFGPMLNNIRGTAEQRQAELCEGLGTTMTRPAN"
     gene            complement(1625..2509)
                     /locus_tag="VGN19_01835"
     CDS             complement(1625..2509)
                     /locus_tag="VGN19_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013837895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEV7194656.1"
                     /translation="MTEEASRSAGELARHLGVPITTLRTWDRRYGLGPDGHEPGRHRR
                     YGKQDQARVERMRQLVADGVAPSHAARRALGEAGAPEDVEATDRVPGGSRDEERSYAS
                     RSRALRRAALALDPGQLDHILGPSVVEGVVPAWTRVICPAMRHIGERNDATGHYVDTE
                     HMLSAAVTAALARVARPSTRPNILLACVPEEQHALPLEALAAALAEVGQSCLTLGARV
                     PVTALTDAISRTGPDAVVLWAHLPVGQDPLDAVLSARPRPAVIAACGPGWPTTDLVPS
                     ILRPTSLRQAVALLAPDG"
BASE COUNT          407 a          931 c          931 g          491 t
ORIGIN      
        1 cctcggctcg atcgcgctgt tgcagaccgg gctcttcctc cggcctggct acaacgagtc
       61 cccgttcctg gacgagggcc tgtacctcta catgggtcat cgcatgatcg accatctgct
      121 gcacgggacc tatctgatgg aggacccggg taagtacttc tccggggcgc ccgggctcta
      181 ccccgtcctg gcagcgctgg gcgacagtgt cggtggcgtt cagggcgccc gtgcggtcag
      241 cttgatcggc gtgatcggtg ccatggtggg ggtcttcggt ttcacccggg tgctgttcgg
      301 gcgcaccgca ggcctcttcg ccgccctcac gttcgcgacc ttcgggtcgg tcatctacca
      361 gtcgcatctt gccgtgtacg actcctggat gatgatgttc gtcgcgtttg ccgcctggtt
      421 gaccgtctac agcgtggcgc acgacggatt cgcctggtcc cccgtcgtcg gagtgctgct
      481 gaccctcgcg ttcttcacca agtacgcggg cgcggtctac gtcccgatag tcgccctcgt
      541 ggccatcgcc gtcggctggc ggcagttcca ctggctcatc gtgcgacgtg ccctttacat
      601 ggtggccacc gccgtggtga cggccttctt catcctcgcg gtctggggct cctcgttgta
      661 cgaggggatc gagaccacca ccaccagccg cacgatcctg ctgcccgtgc cacctgcgga
      721 gctgttccgg gagtccgtgg ggtggttggg gcccagcctg ctgcttgccg ccctcggtgc
      781 ggtgctcgcg ggccgtcagc actggcgcct gagtgttgtc ctgctgctcg gcagcgtcgt
      841 gggggtgacg cagcagatcc acatcggcga aggcgtcagc atatacaaac acatcgcctt
      901 cgggatggtg ttcgccagcc cgctgatcgg gtatctgttc gcccgggtcg tacgccactt
      961 gcgatggttg acgatccctg ccgtagccgt ggtgagcggc ctgctgctgg tcgtcggcat
     1021 gagcaacgcg cagttctggc tcacgaactg gccgcaggac caggcgctcg tgagcagcct
     1081 gcgaccggcg atcgccctca atccgggcaa ggagatcctt gcggaggaag ggacgccgga
     1141 gcggtacgca ctgcgtggcg tcattgctcc agcgcagtac agcgacacgt actacctgtc
     1201 gtaccaggga ctgacgggcg tcccggcgta caaggcagcc atcgaccagg tgtacttcgg
     1261 ggtcatctac ctcgatggag tcacgcccgc cggccactgg atctcccagt acctggcgaa
     1321 caacgacacc gagtacgtcc agcgcgagtc ggtgcctcgg tacgctcacg gccagctcac
     1381 ggggtactgg gttgtatacg tccccaaggt gtccgaacac ctgccgtccg gtaccaccac
     1441 gggagcccgg tagtcggctg cgcggtgagg ctcgggaagg atcttcgtcc catgcggagc
     1501 gacatccacc acaggatctt cggccccatg ctgaacaaca tccggggaac cgccgagcag
     1561 cgacaggccg agctgtgcga gggcctcgga acgaccatga cgcggccagc gaactgaggc
     1621 ccgttcagcc gtccggggcg agcagcgcga cggcttgtcg caggctggtc gggcgcagga
     1681 tgctaggaac gaggtctgtc gtgggccagc ccggcccgca ggctgcaatg acagcgggcc
     1741 gggggcgcgc ggacaacacc gcatcgagcg ggtcctgacc gacgggtagg tgcgcccaga
     1801 gcacgacggc gtccgggccg gttcgggaga tcgcgtcggt cagagccgtc accgggaccc
     1861 gggcaccgag cgtgagacac gactgaccaa cctcagcaag tgcggcggcc aacgcctcca
     1921 gcggaagcgc gtgctgctcc tccggtacgc acgccagcag gatgttgggc cgtgtcgaag
     1981 gtcgcgctac tcgggcaagc gccgcagtga cggcggccga gagcatgtgc tcggtgtcga
     2041 cgtagtgccc tgtggcgtca ttgcgttcgc cgatgtggcg catcgccggg cagatcaccc
     2101 gtgtccacgc tggtacaacg ccctcgacga ccgacgggcc gaggatgtgg tccagctgcc
     2161 cgggatcgag ggccagggcc gcacggcgaa gggcgcggga ccgcgaggcg tacgaccgct
     2221 cctcgtccct cgagccacct ggcacccggt cggtcgcctc cacatcctct ggagcaccgg
     2281 cttcaccgag agctcgtcgt gcggcgtggc tcggggccac gccgtcggcc accagctggc
     2341 gcatccgctc cacgcgtgcc tggtcctgct tgccgtatcg gcgatgccgc ccgggttcat
     2401 gcccgtccgg gcccagcccg tagcggcggt cccaggtccg caacgtcgtg atcgggacgc
     2461 cgaggtgcct ggccagctcc cccgcgctgc ggctcgcttc ctcggtcacc gtgacactcc
     2521 aacggcgtcg ggtcgaccag tcctgacggg ctgcgccgac gtgcacacgg agaagggcac
     2581 cacgacccgc tggccggcat ctgccacggt acgcacggtc ccctcgtcca cgttgtacac
     2641 acgagtgatc ctagcatact gtttcgtttg cgtcgttttg tgcgtcgctt tcagtggtag
     2701 acacacgtga ccagggagcc ggtgcgatgg tgacgacgag cggctcgttc acgtctcgtg
//
LOCUS       DASYFY010000096         1707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_742841, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000096 DASYFY010000000
VERSION     DASYFY010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_742841"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /locus_tag="VGN19_01840"
     CDS             complement(<1..554)
                     /locus_tag="VGN19_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEV7194657.1"
                     /translation="MAPALIDAYSGVVCDLDGVVYRGPEAVEHAVSALSGLTVPVVYA
                     TNNASRPPGEVAAHLSELGLEVTGRNVVTSSQAGAAELAAKLPRGALVLAVGGPGVRD
                     ALVHAGLRVVLPREINDSEETVVDGVLQGYGQSVTASDLAEAAYAVAAGALWVATNTD
                     RTLPTHRGTAPGNGTLVAAVQSATR"
     gene            complement(555..1313)
                     /locus_tag="VGN19_01845"
     CDS             complement(555..1313)
                     /locus_tag="VGN19_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194658.1"
                     /translation="MTGKELDRSVHQQLRTLSKENAEGVAQHLVMVAALLDVDDMEGA
                     EAHAETAVRRAGRVPATREALGLVAYRKGEWARALSEFRTARRLSGSSHLLALMVDCE
                     RGLGRPERALELAASPEARTLAVEDRVELAIVMSGIRRDLGQPDAARLALEIPQLKGT
                     ARKPWSARLAYAYADALLALGQDDEAREWFSRAAIVDEDLETDASERLAELDGIAFTD
                     LLGDDDAEGDASTAEVGDGRGNRAREDSAHEGPA"
BASE COUNT          264 a          639 c          564 g          240 t
ORIGIN      
        1 cgggtcgcgg actggacggc ggcgacgagc gtgccgttgc ccggggccgt gcctcgatgg
       61 gtgggcagcg tgcggtcggt gttggtggcc acccacaagg ccccagcagc cacggcatac
      121 gcggcctcgg cgaggtcgga cgcggtcacc gactggccgt agccctggag gacgccatcg
      181 accaccgtct cctcgctgtc gttgatctcg cgaggcagca ccacgcgaag tccggcatgg
      241 accaacgcgt cccggacgcc cggaccaccc acggcgagca ccaaagcacc cctggggagc
      301 ttggcggcga gttctgccgc gccggcctgt gaactggtga cgacattgcg gccggtcacc
      361 tccaggccga gctcgctgag atgcgccgcg acctcaccgg gaggacgcga ggcgttgttc
      421 gtggcataga ccacgggcac cgtgaggccc gacaaggcgc tgacggcgtg ctccacggcc
      481 tcgggcccgc ggtacaccac gccgtcgaga tcgcacacga ccccggagta agcgtcgatc
      541 agagcggggg ccacctacgc aggtccctcg tgggcagagt cctcccgagc tcggttgcca
      601 cggccgtcgc cgacctcagc cgtgctggca tcgccctcgg cgtcgtcgtc gccgagtaga
      661 tcggtgaacg cgatgccgtc cagctccgcg agccgctcag acgcgtcggt ctccaggtcc
      721 tcgtccacga tcgccgcgcg cgagaaccac tctcgggcct cgtcgtcctg tcccagcgca
      781 aggagcgcat ctgcgtaggc gtaggccaac ctcgccgacc atggcttacg agcagtcccc
      841 ttcagctgag gaatctccaa cgcgaggcgg gcggcgtcag gctgacccag atcgcgccgg
      901 atgccggaca tcacgatcgc cagctcaacg cggtcctcga cggccagcgt gcgcgcctcc
      961 ggcgaggcag cgagctcgag cgcccgctcc ggacgcccca agccgcgttc acagtccacc
     1021 atcagggcca acaggtgtga ggagccgctg agccgacgcg cggtgcggaa ctcgctcagg
     1081 gcacgcgccc attccccctt gcggtaggcc accaaaccca gcgcctcccg agtggctggc
     1141 acccggcccg cccggcgcac cgcggtctcc gcgtgcgcct cggccccctc catgtcgtcg
     1201 acgtcaagca gggccgcgac catgaccagg tgctgggcca caccttcagc gttctccttg
     1261 ctgagcgtgc ggagctgctg atgcaccgaa cggtccagct ccttacctgt cacgccttca
     1321 gcgatgcgag gctccggaag ccggggcttc ttgggcgcga gccgtggccc gcctcggttc
     1381 tcaccgttgt caacgtctcc ggcgaacctg tcacgccccg cccgagccgg gcccccacgg
     1441 gactcaccgg aacgtccctg acccgacgag ccggcacgcc gaggtccgtc ggcccgcgaa
     1501 ccgcctgcgt cccgacgggg cccacctgac ggcccaccag cccggcctgt accaggacct
     1561 gacggacggc ggttgtcgcc tccacggcta ggcgggttct gaggcacgac ttctccttgg
     1621 ggtgatcggg tcatacgaag tctacggaca ggcacaacag cggccccagc ggcatccagg
     1681 tgtgcggtcc agctggacgt cggacaa
//
LOCUS       DASYFY010000097         2451 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_585146, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000097 DASYFY010000000
VERSION     DASYFY010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585146"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /gene="sufC"
                     /locus_tag="VGN19_01850"
     CDS             <1..596
                     /gene="sufC"
                     /locus_tag="VGN19_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEV7194659.1"
                     /translation="HPKYTVTGGTVTLDGEDVLAMSIDERARAGLFLAMQYPVEVPGV
                     TVSNFLRTAKTAIDGEAPKLRTWVKDVKEAMGNLRMDPAFAERNVNEGFSGGEKKRHE
                     ILQMELLRPSVAILDETDSGLDVDALRIVSEGVNRAKESTDVGVLLITHYTRILRYIK
                     PDFVHVFVDGKIVEEGGPELADRLEAEGYDRYVGATA"
     gene            608..1885
                     /locus_tag="VGN19_01855"
     CDS             608..1885
                     /locus_tag="VGN19_01855"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SufS family cysteine desulfurase"
                     /protein_id="HEV7194660.1"
                     /translation="MSTFSDGELARIRAGFPILSRTVRDGKPLVYLDSGATSQRYAGA
                     LDAERAFSEEVNSAVHRGAHQLSEEATDAYEGARATVARFVGAADDEVIFTKNATESL
                     NLVAYAFSNSVAGQAKDPRLDLRPGDEILITEMEHHANLVPWQELARRTGATLRWVGV
                     TDEGRLDLSNLDELLTQRTKVFAFTHVSNVLGTINPVRELTKAARTVGALTVLDACQS
                     APHLRLDAADLGVDFLAFSGHKMFGPTGVGVLWGRSELLHAMPPFITGGSMIETVRME
                     ATTYAAPPQRFEAGSPNSAQAVGLGAAIAYLGELGMDRIAAHEHALTERLLAGLAQRP
                     WVRVIGPAEAVDRVGAVAFDVQGVHAHDVGQVLDDQGVAVRVGHHCAWPLHRRMGVTA
                     TTRATLAAYTTPAEVDAMLAALDLVPAVFGVAS"
     gene            1885..2382
                     /locus_tag="VGN19_01860"
     CDS             1885..2382
                     /locus_tag="VGN19_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEV7194661.1"
                     /translation="MDLYQELILEHSKRPHHAGLREPFGAQVHHVNPTCGDEVTLRVA
                     VEGTGESAVIRDVSYEALGCSISTASTSVLTDEVIGHTVTEALATHEAMRTMLTSKGQ
                     VSGDEDQIGDGVAFAGVSKYPARVKCALLGWMAFTDALYQAGISANADDTDNTQTSQL
                     KETGR"
BASE COUNT          412 a          855 c          821 g          363 t
ORIGIN      
        1 gtcaccccaa gtacaccgtc accggcggca ccgtcaccct cgatggcgag gacgtgctgg
       61 cgatgagcat cgacgagcgc gcccgggctg gcctcttcct ggcgatgcag taccccgtcg
      121 aggtgcctgg cgtcacggtg agcaacttcc tgaggaccgc caagactgcg atcgacggcg
      181 aggctcccaa gctgcgcacc tgggtcaagg acgtcaagga ggccatgggc aacctgcgga
      241 tggacccggc gttcgccgaa cgcaatgtca acgagggctt ctccggtggc gagaagaagc
      301 gccacgagat cctccagatg gagctgctcc gcccgtcggt ggcgatcctc gacgagaccg
      361 actcgggcct ggacgtggac gcgctgcgga tcgtgtccga gggcgtcaac cgggccaagg
      421 agtccaccga cgtgggggtc ctgctgatca cccactacac gcgcatcctg cggtacatca
      481 agccggactt cgtgcacgtc ttcgtcgacg gcaagatcgt cgaggagggc ggccctgagc
      541 tggccgaccg tctcgaggcc gagggctacg accgctacgt cggcgccacg gcctgagctg
      601 ccgccccatg agcaccttca gcgacggtga gctggcccgg atccgggccg gcttcccgat
      661 cctgtcgcgc accgtgcggg acgggaagcc gttggtctac ctcgactccg gcgcgacctc
      721 ccagcggtat gccggtgcgc tggacgccga gcgggcgttc agcgaggagg tcaactcggc
      781 ggtgcatcgc ggggctcatc agctcagtga ggaggccacc gacgcctacg agggcgcgcg
      841 cgccactgtc gcgcggttcg tgggggccgc agacgacgag gtgatcttca ccaagaacgc
      901 gacggagtcc ctcaacctcg tggcctatgc gttctccaac tccgttgcgg gacaggccaa
      961 ggatccccgg ctcgacctgc gccccggcga cgagatcctg attacggaga tggagcacca
     1021 cgcgaacctg gtgccgtggc aggagctggc tcgtcgtacc ggcgcgaccc tgcgttgggt
     1081 cggcgtcacc gacgagggtc ggctcgacct gtcgaacctc gacgagctgc tgacccaacg
     1141 caccaaggtc ttcgcgttca cccacgtgtc caacgtgctc ggcacgatca acccggtccg
     1201 tgagctgacc aaggccgccc ggacggtggg cgccctcacc gtgctcgacg cctgccagtc
     1261 ggcgccgcac ctgcggttgg acgctgcaga tctgggggtg gacttcctcg ccttctccgg
     1321 ccacaagatg ttcggcccga ccggcgtcgg agtgttgtgg ggccgcagcg agctgctgca
     1381 cgccatgccg cccttcatca ccggcggttc gatgatcgag accgtacgga tggaagcgac
     1441 gacgtatgcc gccccgccgc agcgcttcga ggcgggctca ccgaactccg cccaggccgt
     1501 ggggctcggc gcagccatcg cctacctcgg cgagctgggg atggaccgta tagcggccca
     1561 tgagcacgcg ctcaccgagc gactgctcgc cggcctggcc cagcgcccct gggtccgcgt
     1621 cataggtccc gccgaggccg tcgaccgggt cggcgcggtc gccttcgacg tccaaggcgt
     1681 ccacgcgcac gacgtcggcc aggtgctgga cgaccaaggg gtggccgttc gcgtcggaca
     1741 ccactgcgcc tggccgttgc accgccgtat gggcgtcacc gccaccacgc gagccacgct
     1801 cgcggcatac acgacccctg ccgaggtgga cgccatgctc gcggcgctcg acctcgttcc
     1861 ggccgtgttc ggggtggcca gctgatggac ctgtaccagg agctcatcct cgagcactcc
     1921 aagcgacccc accatgccgg gctgcgcgag cccttcggtg cacaggtgca tcacgtcaat
     1981 cccacctgtg gtgacgaggt gacgctaagg gtggccgtcg aaggcaccgg cgagagcgcc
     2041 gtgatccggg acgtgtcgta cgaggccctg ggctgctcga tctccaccgc atcgaccagc
     2101 gtcctgaccg acgaggtcat cggccacacc gtgaccgagg cactggccac ccacgaggcc
     2161 atgcggacca tgctcacctc caagggccag gtctccggcg acgaggacca gatcggcgac
     2221 ggggtggcgt tcgccggtgt ctcgaagtac cccgcccgcg tgaaatgtgc tctgctggga
     2281 tggatggcct ttaccgacgc gttgtaccag gcagggatca gcgccaacgc tgacgacacc
     2341 gacaacacac agaccagcca gctgaaggaa acaggacgat gagcgaagtg accacccgac
     2401 cgaacgtcgc tgacgtcgaa gaggccatgc gcgacgtcgt cgaccccgag c
//
LOCUS       DASYFY010000098         2662 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_585168, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000098 DASYFY010000000
VERSION     DASYFY010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585168"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..509
                     /locus_tag="VGN19_01865"
     CDS             <1..509
                     /locus_tag="VGN19_01865"
                     /inference="COORDINATES: protein motif:HMM:NF044751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194662.1"
                     /translation="TANAHSRGGYRIDDELLLTARYRSPAVIADRDNDDAVTTLDPEG
                     YHPSCQPGQRLPHVRLSGGSAGGTSSLDLLGSGFTLLTTTDDPAWRRQAAKAQQAGQP
                     VTDQAINTGTQRGTKPGSWARLVGSGGEPIAVLVRPDGHIAWCGTGPVVDLKPILRRI
                     FSAKFAPR"
     gene            complement(815..1564)
                     /locus_tag="VGN19_01870"
     CDS             complement(815..1564)
                     /locus_tag="VGN19_01870"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7194663.1"
                     /translation="MERHELLARLHQTLRPRNYLEIGVDRGDSLALSRVPSIGIDPAF
                     SVVHELNTDVQLVRATSDDYFSVNNPTKRLGDNPLDFVFIDGMHLAEFALRDFIYVEA
                     YSAPTSVIVFDDMLPRNSVEAARQRQSVAWTGDVFKVTTILKSLRPDLVVLEVDTSPT
                     GTVVVLRPDGASARLVENYPAIEAAILQEQDPQEPPESVIRRTEAVDPVELLACSWWA
                     TLTEEREGSLPAGSLTAALAAQDWAQLRSRG"
     gene            1894..2190
                     /locus_tag="VGN19_01875"
     CDS             1894..2190
                     /locus_tag="VGN19_01875"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEV7194664.1"
                     /translation="MAAGLDLVFAQPNGGAIERKSDWRAWKVLLQDAGVRDVRLHDGR
                     HTAATLLLSEGVHPRVVMEVLGHAQMRTTTDNYSHVMPALGRDAADRMGRALWD"
     gene            2237..2533
                     /locus_tag="VGN19_01880"
     CDS             2237..2533
                     /locus_tag="VGN19_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194665.1"
                     /translation="MTDMDLVLQALAERGVWHGSDDGDAELVRVEIRRAARKAGIKVR
                     TTVDGLGRPHACTPDGWPAHEPWRGAAIHADESGAMDAVVMHALDRLLRNDDAG"
BASE COUNT          472 a          949 c          846 g          395 t
ORIGIN      
        1 ccaccgccaa cgcccacagc cgcggcgggt accgcatcga cgacgaactg ctgctcaccg
       61 cccgctaccg ctcccccgca gttatcgctg accgcgacaa tgacgacgcc gtcacgacgc
      121 tcgatccgga gggctaccac ccaagctgtc agccgggcca gcgcctcccc catgtccggc
      181 tcagcggcgg gtcggcaggc ggcacctcca gcctcgacct ccttggctcc ggcttcacgc
      241 tgctcaccac gacggatgac ccggcgtggc gccgtcaggc tgccaaggcg caacaggcgg
      301 gacagcctgt gaccgaccag gcgatcaaca ccggcacgca gcgggggacc aagcccggat
      361 cctgggcacg tctcgtcggc agcggcggcg agccaatcgc cgtcctcgtc cgcccagacg
      421 gacacatcgc ctggtgcggc accggtccag tagtcgatct caagcccatc ctgcgccgca
      481 ttttctcggc caaatttgct cctcgttaac ggcctacccc cgcagcacag gatgaccgat
      541 gcgcaaaccc cgcctcaaca gagacggggt ttgaacatga actatccatc aggtcgatga
      601 gtagtcgttc cgaagccgct tgaccttcgg ccggccctgg gccgttcctc gcactcccac
      661 gctgatcgca aaaggccggc tcagccagcc ggtggcgtcc gccgcggtcc gtcggtcgtt
      721 ggtgtggttg acccctctga cgagtgcccg gtgtcgcaaa cggaaaccag cagccctagg
      781 caccctggaa ccagcgagcc gacaactgtg gacctcaacc gcggctacgg agctgcgccc
      841 agtcctgagc ggccagagcg gcagtcagag acccggcggg caggctgcct tcgcgctcct
      901 cggtcagggt cgcccaccag gaacaggcca acaactcgac cggatcgaca gcctcggtgc
      961 gacggatcac gctctcgggt ggttcctgcg ggtcctgctc ttgcaggatg gcggcttcga
     1021 tggccggata gttctccacc agtcgggcgg acgcgccgtc cggccggagg acgacgaccg
     1081 ttcccgtcgg gctggtgtcc acttccagga cgaccagatc gggtcgcagg gacttcagta
     1141 tcgtcgtgac cttgaagacg tcgcccgtcc atgcgaccga ctgccgctgc ctggccgctt
     1201 ccaccgagtt acgaggaagc atgtcgtcga agacgatcac gctcgtggga gcggagtagg
     1261 cctcgacgta gatgaaatca cgaagcgcga actcggccag gtgcattccg tcgatgaaaa
     1321 cgaaatcgag ggggttgtca cccagtcgct tcgtcgggtt gttgacgctg aaatagtcgt
     1381 cactggtagc ccggaccagt tggacgtcag tgttcagttc gtgcacgacg gagaatgccg
     1441 gatcgatgcc gatgctcggc accctggaga gggccaggct gtcgccccgg tcgacgccga
     1501 tctccaggta gttgcgaggt ctcagtgtct ggtgcagtcg agccagcaac tcgtgacgtt
     1561 ccacagaaat cccctccgcc tcatcgtccg cagccgacgc cgatgtcccg tcggacgaat
     1621 cttggttccc gatccagcgc cacttcgatg agtgaaaccc gggccacggt acacatcggc
     1681 acgcctcggg acagccctga agaccgcccc caggaacaac gtgtcgcggc gagtcccagg
     1741 cgccccacgg gaacccgctc gaacagcacc tgcacctgac ccagttccct ccgacacagc
     1801 ggtggacgcc gcccggaggg ccgtccgcca ggacacggac ccacgtgctc gcagcaacaa
     1861 tcacgggcac cccgagccca gctcgaggag cgcttggccg ccggcttgga cctggtcttc
     1921 gcccagccga acggcggggc gatcgagcgc aagtccgact ggcgcgcctg gaaggtcctg
     1981 ctccaggatg cgggggtgcg ggacgtgcgg ctgcacgacg gccggcacac agcagcgacc
     2041 ctcctgctgt ccgagggagt gcacccgcgg gtggtcatgg aagtcctcgg ccacgcacag
     2101 atgcggacga ccacggacaa ttacagccac gtcatgccgg ccctcggccg cgacgccgcc
     2161 gaccgcatgg gccgagcact gtgggactga cctgacactc gattcccgtc gaggttcccg
     2221 gggccaccat gaccgtgtga cggacatgga cctcgtcctc caggccctcg ccgaacgcgg
     2281 cgtgtggcac gggagcgacg acggggacgc cgagttggtc cgtgtcgaga tccgtcgcgc
     2341 agcccgcaag gcagggatca aggtccgcac caccgtcgac ggtctggggc gaccgcatgc
     2401 ctgcacgccc gacggctggc cggcgcacga gccctggcga ggagctgcga tccatgccga
     2461 cgagtcagga gccatggacg ccgtcgtcat gcatgcgctc gaccgcctct tgcgcaacga
     2521 cgacgccggc tgacgccagg ctcctgtgga gttccgagct cccttctgca cggccccgca
     2581 ctgacgcgca cgaccgcgga cacgccggga ctgcgctggc accggatgga tcccgtggct
     2641 accaaagcgg caccgccgac gg
//
LOCUS       DASYFY010000099         2147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_112107, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000099 DASYFY010000000
VERSION     DASYFY010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112107"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VGN19_01885"
     CDS             complement(<1..790)
                     /locus_tag="VGN19_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine aldolase family protein"
                     /protein_id="HEV7194666.1"
                     /translation="MSPTTTTPRVDLLSDTLTRPTDAMRQAMAHAPVGDDVFGEDPTV
                     RELERRVAGLLGHEDGLFTPSGSMANQLGIRLHVKPGEELIADSLAHVLRAEMGAAAV
                     LSGISARSWVADHGLLDAAQPLALMIPDGGTYQVNTRLVVVENTHNFGGGTVQPLDQI
                     QLLRERTLVAGVAMHLDGARLWNAHVATGISLQTYGELFDTVSVCLSKGLGAPVGSVL
                     VGSAERMQEARIWRKRFGGGMRQVGILAAAGLHAVDHHVARLADD"
     gene            complement(799..2115)
                     /locus_tag="VGN19_01890"
     CDS             complement(799..2115)
                     /locus_tag="VGN19_01890"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEV7194667.1"
                     /translation="MAAGADLPAAQQPRWPDPEQLKSAVAELATYPPLVFAGECDVLK
                     SRMAAAGRGEAFVLQGGDCAETFAAATADNIRDRVKTILQMAAVLTYGASVPVVKVGR
                     MAGQYAKPRSSDDETREGVTLPAYRGDMVNDFEFTPDARVPDPHRLVRAYHASSATLN
                     LVRAFTHGGFADLRHVHDWNRGFVANAANSRYERLAKDIDKAMKFMLACGADFEAMKT
                     TEFFSAHEALLLDYERPLTRVDSRTGELYDTSGHFIWVGERTRDIDGAHVDFVSKVLN
                     PIGVKLSGKVEVDDVLRLIDKVDPDREPGRLTFITRMGAKAVRDALPPLIDKVTGSGA
                     QVTWICDPMHGNTFESASGYKTRDFEDVVEEVRGFFEVHQGLGTVPGGIHVELTGNDV
                     TECIGGAEKILDADLTKRYETVCDPRLNHQQSLELAFLVAEMLAKD"
BASE COUNT          317 a          721 c          763 g          346 t
ORIGIN      
        1 ggtcgtcggc aagccgcgca acgtggtggt cgacggcatg cagcccggcc gcggccagga
       61 tgccgacctg acgcatgcca ccgccgaatc gcttgcgcca gatccgagcc tcctgcatcc
      121 gctctgcaga gccgaccagg accgatccca cgggagcccc gagccccttg gacaggcaga
      181 cgctcacggt gtcgaagagc tcgccgtagg tctgcagtga gatcccggtg gccacatggg
      241 cgttccagag ccgggcacca tcgaggtgca tggccacccc ggccacgagc gtgcgctcgc
      301 gcaggagctg gatctggtcg agcggctgca ccgtgccacc gccgaagttg tgggtgttct
      361 ccaccacgac cagccgggtg ttcacctggt acgtcccgcc gtcggggatc atcagcgcga
      421 gcggctgggc cgcgtcgagc agtccgtggt cggcgaccca cgaacgagcg gagatgcccg
      481 acagcacggc cgccgctccc atctcggcgc gcagcacgtg ggccagggag tcggcgatga
      541 gctcttcccc cggcttgacg tggaggcgga tcccgagctg gttggccatc gacccgctgg
      601 gcgtgaagag accgtcctcg tgtccgagga gccccgccac ccgccgctcg agctcgcgga
      661 cggtcgggtc ctcgccgaag acgtcgtccc cgaccggcgc gtgggccatc gcctggcgca
      721 tggcatcggt cggccgggtc agggtgtcgg agagcaggtc gacgcggggc gtcgtcgtgg
      781 tggggctcat cggcagcttc agtccttggc cagcatctcg gcgacgagga aggcaagctc
      841 caggctctgc tggtggttga gccgtgggtc gcacaccgtc tcgtagcgct tggtgaggtc
      901 ggcatcgagg atcttctcgg cgccgccgat gcactcggtc acgtcgttgc ccgtgagctc
      961 gacgtggatg ccgccgggca ccgtgcccag gccctggtgc acctcgaaga acccacgcac
     1021 ctcctccacg acgtcctcga agtcacgcgt cttgtagccg ctcgccgact cgaaggtgtt
     1081 gccgtgcatg ggatcgcaga tccacgtgac ctgtgcgcct gaaccggtga ccttgtcgat
     1141 gaggggtggc agggcgtcgc gcacggcctt cgcgcccatc cgcgtgatga acgtcagccg
     1201 ccccggctcg cgatcggggt cgaccttgtc gatgaggcgc agcacgtcgt cgacctcgac
     1261 cttgccagag agcttgaccc cgatcgggtt gagcaccttg gagacaaaat cgacatgggc
     1321 gccgtcgatg tcgcgagttc gctcacccac ccagatgaag tggccactgg tgtcgtagag
     1381 ctcccccgtg cggctgtcga ccctggtgag gggccgctcg tagtcgagca gcagggcctc
     1441 atgggcggag aagaactcgg tggtcttcat cgcctcgaag tcggcgccac aggcgagcat
     1501 gaacttcatc gccttgtcga tgtccttggc gagccgctcg tagcggctgt tggcggcatt
     1561 ggcgacgaaa ccgcggttcc agtcgtggac gtggcgcagg tcggcgaagc caccgtgcgt
     1621 gaaagcccgc acgaggttca gggtcgccga gctggcgtgg taggcgcgca ccagccgatg
     1681 cgggtcgggg acccgggcat ccggcgtgaa ctcgaagtcg ttgaccatgt cgccgcggta
     1741 tgccgggagc gtgactccct cacgcgtctc gtcgtcgctg ctgcgcggct tggcgtactg
     1801 gccggccatc cggcccacct tgacgaccgg gaccgaggcg ccatacgtca gcacggcggc
     1861 catctgcagg atcgtcttga cccggtcgcg gatgttgtcc gcggtggcgg ccgcgaaggt
     1921 ctcggcgcag tccccgccct gcaggacgaa ggcctcgccg cggccggcgg ccgccatccg
     1981 ggacttgagc acatcgcact cgccggcgaa caccaggggt gggtaggtcg caagctcggc
     2041 gaccgcgctc ttgagctgct cggggtccgg ccaccgaggc tgctgcgcag ccgggaggtc
     2101 ggcaccagcg gccaggctgg cgagggcatc gtgctggtgc gtggtgc
//
LOCUS       DASYFY010000100         5068 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1005656, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000100 DASYFY010000000
VERSION     DASYFY010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5068
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005656"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..837)
                     /locus_tag="VGN19_01895"
     CDS             complement(136..837)
                     /locus_tag="VGN19_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3105 domain-containing protein"
                     /protein_id="HEV7194668.1"
                     /translation="MSNKRASHDRKARLAEVQKQQKAKERKVVAGIVIGCVVLLAALG
                     GVVAYAIGDAQSKQLPHLGVSLAAASCDAPTTDTGGGTGQHVGPGTSQPTVTSVKYTT
                     VPPSHGPHFGTPDVSGRDFYTKVDRPVLETLVHNLEHGYTILWYDGTKVKDTTLLQQM
                     ADQANGLSESSGKFKVVEWDASRGTFPAGKVYALVHWAKDAGHRQMCGGLSGQAIIDF
                     VQKYPKDNTQEVGGV"
     gene            1083..1997
                     /locus_tag="VGN19_01900"
     CDS             1083..1997
                     /locus_tag="VGN19_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2 family
                     protein"
                     /protein_id="HEV7194669.1"
                     /translation="MSRVWRPGRLTSVGLILSIFRRGGADPTFQPDRGEGWWMGLSTP
                     DGAATLRLVQRSELGEVHATAWGDGGAWVLDQVPRLLGAEDDDSDFVAHHPQVARAHR
                     RYAGWHVPRSGLVMHALVPAVIEQKVTGQEAFGGYRALVHRFGSRAPGPGHDRRLWVA
                     PSAAGWAAIPSWEWLRASVDGARSGAAVRAAKVAGRLEECVTLSRDQATARLRAVPGI
                     GVWTAAEVAQRALGDPDSPSFGDYHVAKNLTWALTGEVLDDDALAELLEPYRGHRYRV
                     QRLLELDGAMRPRRGPRMAPRTHLPVRR"
     gene            complement(2040..3161)
                     /gene="cofE"
                     /locus_tag="VGN19_01905"
     CDS             complement(2040..3161)
                     /gene="cofE"
                     /locus_tag="VGN19_01905"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HEV7194670.1"
                     /translation="MGAEGSTGVEGLADAVTIIPLGGVPEVRHGDDLAALLLNAAQGT
                     GRSLRDGDVLVVSSKVVSKALGLWSADRDAAIDLATVRVVAERRSGPRITRIVESTSG
                     PVMAAAGVDASNTGGHPEVLMLPEKPDSEAERLRQSLLAATGLTELGVILSDTAGRPW
                     RSGQTDFALGAAGVQVLDDLRGATDADGQPLTVTARAIADELAGAADLVKGKADAIPA
                     AIVRCADRGVGWARGDQADGAATLVRTGREDWFGYGHAEAVRAALGTEPGSPQSAEIG
                     IASTGPESRTARLSRAIAVALVGAPEAGVDVGPDVLRVSAPTAYVLGLAVARLQVALW
                     GEGLRGEDQRVDSRAHVSGAPEALEVALEVTELRADHSG"
     gene            complement(3167..4141)
                     /gene="cofD"
                     /locus_tag="VGN19_01910"
     CDS             complement(3167..4141)
                     /gene="cofD"
                     /locus_tag="VGN19_01910"
                     /EC_number="2.7.8.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043743 - LPPG:FO 2-phospho-L-lactate
                     transferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate transferase"
                     /protein_id="HEV7194671.1"
                     /translation="MRITALAGGVGGARFLRGLRAHLDSTPELADTELTIVGNTGDDI
                     SLFGLRVCPDLDTLLYTLGGAIHEEQGWGRADESHRVQGELAAYGALPQWFALGDLDF
                     GTHIVRSQWLGQGQSLTEVTARLAQRWGLPQRRITLLPMSDSPVETHVVIEDDEGPRA
                     VHFQEWWVRMQAKVPAQRFQAVGMDRATAAPGVLDAIRQADVVLLPPSNPVVSIGIIL
                     GVPGVRDALRGTAAPVVGVSPLIGGMPVRGHADACLAAIGVDCTARAVAGLYEDFLDG
                     WLVSPEDAEGVRLRRAAVRGRPLLMTDQAAATEIAAGALNLALELKRA"
     gene            4342..4605
                     /locus_tag="VGN19_01915"
     CDS             4342..4605
                     /locus_tag="VGN19_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEV7194672.1"
                     /translation="MQELQLITLEGGHEEELSWQERSLCAQTDPEAFFPEKGGSTREA
                     KKVCVGCEVRSECLEYALANDERFGIWGGLSERERRKLKKRAV"
     gene            4636..>5068
                     /locus_tag="VGN19_01920"
     CDS             4636..>5068
                     /locus_tag="VGN19_01920"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEV7194673.1"
                     /translation="MTLAPNHGLTGAPANGSSSTAVSVTAILFLRGPAAALPETLDAL
                     AAQTRRPERLIVVDPGLDGNAVETVRAHEALSAAIDSIRFVTVPATATLGYAVRAGLA
                     DASSIAAQDGSSPVVEYLWVLATDCVAAPTALGRLVDAVRRS"
BASE COUNT          694 a         1779 c         1813 g          782 t
ORIGIN      
        1 cagtcctgcg ggctggagct ggtcggcgac ctgtccacct cggactcgct ctcccacgag
       61 gagcgacccg tgcactggaa gcgggtcggc ctggactaca ccttcatcct gctgaccttc
      121 cgccgccgct gacgctcaga cgccaccgac ctcctgggtg ttgtccttgg ggtacttctg
      181 cacgaagtcg atgatggcct gacccgacag gccgccacac atctgacggt gaccggcatc
      241 cttggcccag tgcacgaggg cgtacacctt gccggccggg aaggttccac ggctggcgtc
      301 ccactcgacg accttgaact tgccgctgga ctcgctcagc ccgttggcct ggtcggccat
      361 ctgctggagc agggtggtgt ccttcacctt cgtgccgtcg taccagagga tggtgtagcc
      421 gtgctcgagg ttgtggacca acgtctcgag tacgggccgg tcgaccttgg tgtagaagtc
      481 gcggccgctg acgtccggcg tgccgaagtg gggcccgtgg ctcggcggga cggtggtgta
      541 cttcaccgag gtgacggtcg gctgcgaggt gcccgggccg acgtgctggc ccgtgccacc
      601 gccggtgtcc gtggtgggcg cgtcgcacga tgccgcggcc agggagacgc cgaggtgggg
      661 cagctgcttg gactgagcgt cgccgatggc ataggcgacg acgccgccca gggctgccag
      721 cagcaccacg cacccgatga cgatgccggc gacgaccttg cgttccttgg ccttctgctg
      781 cttctggacc tcagccagac gggccttgcg gtcatggctt gctcgcttgt tgctcacggg
      841 ttcctcagtg gttttcgggg tactcggggt cttcaggggt cttcagggct cttcaggggt
      901 cttcgctggt ccagcggttc ttgcggtcgg gcagtgttct tggggctccg gcctggggga
      961 ggcgggccgc gaagagtcta cgggcagacc cagcgggggg tgtcaccaga aggcgtcaca
     1021 ctagggctgt gcacgtgtca tcggagacgc cgaagccggt cgcctcatca gcttcgccag
     1081 aggtgagccg agtgtggcgt ccgggacgcc tcacgtccgt ggggctgatc ctcagcatct
     1141 tccggcgcgg tggcgcggac ccgaccttcc agccggaccg gggtgagggc tggtggatgg
     1201 gcctgtcgac cccggacggg gccgccacgc tgcggctcgt ccagcgatcc gagctcggcg
     1261 aggtgcacgc caccgcctgg ggcgacggcg gcgcctgggt cctcgaccag gtgccgaggt
     1321 tgctgggggc cgaggacgac gacagtgact tcgtcgccca ccacccccag gtggccaggg
     1381 cccaccggag gtatgccggg tggcacgttc cccggtcggg tctggtcatg cacgcgttgg
     1441 ttcctgcggt catcgagcag aaggtcaccg gccaggaggc ctttggcggg tatcgcgcgt
     1501 tggtgcaccg gttcggctcc cgcgcgccgg gacccggcca cgaccgccgg ctctgggtgg
     1561 ctccctcggc cgctggctgg gctgcgatcc cgtcgtggga gtggctgcgc gcctcggtgg
     1621 acggggcacg gtcgggggcc gcggtgcgcg cggccaaggt tgccgggcgg ctcgaggagt
     1681 gcgtcacgtt gagccgcgac caggcgacgg cccggctgcg ggccgtgccg gggatcggcg
     1741 tgtggactgc cgcggaggtg gcccagcgcg ccctgggaga cccggactcg cccagcttcg
     1801 gcgactacca cgtcgcgaag aacctcacct gggcgttgac gggagaggtg ctggacgacg
     1861 atgcgctcgc ggagctgctc gagccctacc ggggacaccg gtaccgcgtg cagcgcctgc
     1921 tcgagctcga cggcgccatg cgcccgcgcc gtggcccgcg gatggcgcca cgcacccatc
     1981 tcccggttcg ccgctgagcc ctcagacccg cgaacgaccc gcgaacgacc cgagcacctc
     2041 tagcccgaat ggtccgcccg tagttcggtg acctcgaggg cgacctcgag ggcctccggc
     2101 gccccggaga cgtgcgccct gctgtcgacg cgttggtcct ccccccgcag gccttccccc
     2161 cacagcgcca cctgtaggcg ggccaccgcc agccccagca cgtatgccgt gggggcgctc
     2221 acccggagga cgtcggggcc gacgtccacg ccggcctcgg gggctcccac cagcgcgacc
     2281 gcgatcgcgc gggacaagcg cgccgtgcgg gactccggcc cggtggacgc gataccgatc
     2341 tcggcggact gcggcgagcc aggctccgtc ccgagggccg ctcgcacggc ctcggcgtgc
     2401 ccgtagccga accagtcctc gcgcccggtg cggaccaggg tcgccgcacc gtctgcttgg
     2461 tcgccgcggg cccacccgac gccccggtcg gcgcaacgca cgatggccgc ggggatcgcg
     2521 tcggccttgc ccttcacgag gtcggcggcg ccggcgagct cgtcggcgat ggcccgcgcg
     2581 gtgaccgtaa ggggctggcc atccgcgtct gtggcaccgc ggaggtcatc cagcacctgg
     2641 accccggcag ctcccagtgc gaagtcggtc tgcccggagc gccagggccg tccagcggtg
     2701 tcgctgagga tgacgccgag ctcggtcagc ccggtcgcgg cgagaagtga ctggcgcagc
     2761 cgctccgcct cggagtccgg cttctccggc agcatgagca cctcggggtg tccgccggtg
     2821 ttggacgcgt cgaccccggc cgccgccatg accgggccgc tggtggactc gacgatccgc
     2881 gtgatccgag gaccggagcg tcgctcggcg acaacgcgaa cggtggccag gtcgatggcg
     2941 gcgtcgcggt cggccgacca caggccgagg gccttggaga cgactttgct cgacaccacg
     3001 agcacgtcgc cgtcgcggag ggacctcccc gtgccctggg ctgcgttgag caacagggcg
     3061 gcgaggtcat cgccgtgccg gacctcggga acgcccccga gcgggatgat cgtcacggcg
     3121 tccgccaggc cctcgacgcc agtcgaaccc tcggcgccca cgacggtcag gctctcttca
     3181 gctcgagggc gaggttcagc gcgccggcgg cgatctcggt cgcggcggcc tggtcggtca
     3241 tcaacaacgg ccgtccacgg acggctgccc ggcgcagccg gaccccctcg gcatcctcgg
     3301 gcgacaccag ccagccgtcg aggaagtcct cgtacagccc cgccaccgcc cgtgccgtgc
     3361 agtccacgcc gatcgcggcc aggcacgcat cggcatggcc gcgaaccggc atacctccga
     3421 tgaggggtga gactccgacc actggtgccg cggtgccgcg cagggcgtcg cgcacgccgg
     3481 ggacgcccag gatgatgccg atcgacacca cggggttgct ggggggcagc agcacgacat
     3541 cagcctgccg gatcgcatcc aggacacccg gggccgcggt cgctcggtcc atgcccaccg
     3601 cctggaaccg ctgggccgga accttcgcct gcatccggac ccaccattcc tggaagtgga
     3661 ccgcgcgggg cccctcgtcg tcctcgatga cgacgtgggt ctcgacgggg gagtcgctca
     3721 tgggcagcag ggtgatccgc cgctgcggca gcccccagcg ctgggcgagg cgggcggtca
     3781 cctcagtgag cgactggccc tggcccagcc actgcgaacg cacgatatgg gtgccgaagt
     3841 cgaggtctcc cagggcgaac cactgcggca gcgcgccata tgccgcgagc tcgccttgaa
     3901 cgcggtggct ctcgtcggcc ctgccccagc cctgctcctc atggatggcg ccgccgaggg
     3961 tgtagagcag cgtgtcgagg tcgggacaga cgcgcagccc gaacaggctg atgtcgtcac
     4021 cggtgttgcc cacgatcgtg agctcggtat cggcaagctc gggggtggag tccaggtggg
     4081 cccggagacc gcggaggaag cgagctcctc cgacccctcc ggcgagggcc gtgatacgca
     4141 tggtcgcagt cttgcagtcc tcaggtcggc gccctcggcg aggtccccga tgccgctcca
     4201 ccggccgcag atcgctatca aggttcaacc aattgggcaa atatcagact tccgcttgac
     4261 taaccccgta tgacacgcgt gtaattccat tgttgtgacg tacccgtcac ggcagcggcg
     4321 taccgggtcg aggaggaagc cgtgcaagaa ctgcagctga tcaccctgga gggtgggcac
     4381 gaggaggagc tctcgtggca agagcgctcc ctgtgtgccc agaccgatcc agaggcattc
     4441 ttccctgaga agggcggctc gacgcgcgag gccaagaagg tgtgcgtcgg gtgcgaggtc
     4501 cggtccgagt gcctggagta cgccctcgcc aacgacgagc ggttcgggat ctggggcggc
     4561 ctgtccgagc gggagcgccg caagctcaag aagcgcgcgg tttagccgcc gcccggcggc
     4621 tcccgtgtcg agcgtatgac gcttgccccg aaccacggtc tgaccggcgc acccgcgaac
     4681 ggctcttcgt cgaccgcggt gagcgtcacc gcgatcctct tcctgcgcgg ccccgccgct
     4741 gccctgcctg agactctcga cgccctcgcc gcccagaccc gccgcccgga acggctcatc
     4801 gtggtcgacc ccggtctcga cggcaacgcc gtcgagaccg tgcgcgctca tgaggccttg
     4861 tctgccgcca tcgactcgat ccgattcgtg accgttccgg ccaccgcgac cctggggtat
     4921 gccgttcgcg ctggcctggc tgacgcgagt tccattgcgg cacaggacgg ttcgtctccc
     4981 gtggtggagt atctctgggt cctggctacg gactgcgtgg ctgcccccac agccctgggc
     5041 cgactggtgg atgccgtacg tcggtcgc
//
LOCUS       DASYFY010000101         2691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1321698, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000101 DASYFY010000000
VERSION     DASYFY010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321698"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..974
                     /locus_tag="VGN19_01925"
     CDS             81..974
                     /locus_tag="VGN19_01925"
                     /inference="COORDINATES: protein motif:HMM:NF038012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEV7194674.1"
                     /translation="MNHPMVIGVALAATVFFALSTALKHRSASTVSVADRQGTAWLGH
                     FLAATLSNRWWLAAIGADAVGLALQAFALQIGAVSVVQPVLVTALLFSLILNHAAART
                     RITVREVGWGAVLAIAVGTFLVVSGATTAGIHSSTADRGAAAAVAVLALVLGGGCVVV
                     ARRLPTGGRAALLGVVVGTIYACTAVLLKAVTGVASRGGIAAVLTSWQLPVLVVAGAA
                     GMVLAQLAFRSGPLNASLPAMATIDPLLSVVLGLIVYDEQLRTGLLPTLGEVASLAAL
                     AIAAVALSRISADQDEQPVRS"
     gene            1003..1653
                     /locus_tag="VGN19_01930"
     CDS             1003..1653
                     /locus_tag="VGN19_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7194675.1"
                     /translation="MRITHLGHACLLLEIADARILIDPGGWSPGAADQHDLDAVLVTH
                     QHPDHLDRDRLPDLLRSNPGVRLVTDPDTAALLGEVGVEAEAFGPGAQTRVNSVTVTG
                     VGELHALIHEELPRIHNTGMRLHADGEPVFFHPGDALDGEPGKVDVLAFPLNAPWQRS
                     REMTAFLRRLAAAHAVPIHDGLLSQAGRVLYLGQASTLGSPDTQIHDLAGAGATEF"
     gene            1754..2524
                     /locus_tag="VGN19_01935"
     CDS             1754..2524
                     /locus_tag="VGN19_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194676.1"
                     /translation="MPDPQPALSLRGLTKYFDTTLAVDQLHLDVPRGSFYGLVGPNGA
                     GKTTTLSMATGLLRPDSGSAQVLGVDVWADPVAAKARIGVLPDGLRVFDRLTGRQLVT
                     YAGLLRGMDRAMVHERVEELLVALGLVEAGDKLVIDYSAGMTKKVTLACALVHAPRLL
                     VLDEPFEAVDPVSARTIRGILEDFAGSGGTVVLSSHVMDLVERICTDVAIIVQGRVRV
                     AGPVELVRAGGSLEDRFLDLVGGRTDVQGLAWLRTSSD"
     gene            2500..>2691
                     /locus_tag="VGN19_01940"
     CDS             2500..>2691
                     /locus_tag="VGN19_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEV7194677.1"
                     /translation="MVAHLLRLKLTLLRNGLRRGVSAIIGMVVGLLYGGGFVVVALVV
                     LVMLRAHGDPSVTRTVVVLG"
BASE COUNT          348 a          918 c          956 g          469 t
ORIGIN      
        1 gctacggttg ctggcgtgaa cccggtacct tgcgtcaggg gtgctgccgt gggggtggcc
       61 acaagcgaag cggagggctc gtgaaccatc ccatggtcat cggcgtcgct ctcgcagcca
      121 cggtgttctt cgccctgtcc accgccctga agcaccgcag tgcctccacc gtctccgtcg
      181 ccgacaggca gggcaccgcc tggctcggcc acttcctggc cgcgacgctg tcgaaccgat
      241 ggtggctggc cgcgatcggc gccgatgcgg tgggtttggc gctgcaggcc ttcgccttgc
      301 agatcggggc cgtgtcagtg gtccaaccgg tcctggtcac cgctctgctg ttctccctga
      361 tcttgaacca tgccgcggcc cgcactcgga tcacggtgcg ggaggtgggt tggggtgcag
      421 tgcttgcgat cgcggtcggg accttcctcg tcgtgtcggg ggcaacgaca gcgggcatcc
      481 actcgagcac ggccgaccgg ggcgccgcgg ctgcggtggc cgtcctcgcg ttggtgctcg
      541 gcggggggtg tgtggtcgtc gcgcggcggc tgccgacggg cggtcgggcc gcgctgctgg
      601 gagtggtcgt cggcaccatc tatgcctgca ccgccgtcct gctgaaggcg gtcaccggag
      661 tggcctcgcg gggagggatc gcggcggtcc tgaccagctg gcagctaccc gtgctggtgg
      721 ttgccggagc ggcgggcatg gtgctggccc agctcgcctt ccgttctgga cccctcaacg
      781 ccagcctgcc ggccatggcc acgatcgacc cgctgctcag cgtcgtcctc ggcctgatcg
      841 tctacgacga gcagctacgg accggtctgt tgcccaccct gggcgaggtc gcctccctgg
      901 ccgcccttgc catcgcggct gtggcgctca gccggatctc cgccgaccag gacgagcagc
      961 cggtacggag ctagcgagcg cgaccgcggc tagcgtgggg tgatgcggat cacccacctt
     1021 ggccacgcct gcctgcttct ggagatcgcc gacgcccgca tcctgatcga ccccggcgga
     1081 tggtcgcccg gggcggccga ccagcacgac ctggatgcgg tcctggtgac ccaccagcac
     1141 cccgaccatc tcgaccgcga ccggctgccc gacctgctga ggtcgaaccc tggcgtcagg
     1201 ctggtcaccg accccgatac cgctgccctg ctgggcgagg tgggagtcga ggcggaggcg
     1261 ttcggccctg gcgcgcagac ccgggtgaac agcgtgaccg tcaccggggt cggggagctg
     1321 cacgccctca tccacgagga gctgccccgg atccacaaca cgggcatgcg cctgcacgcc
     1381 gacggcgaac ccgtcttctt ccatcccggg gacgcgctgg acggcgagcc cggaaaggtc
     1441 gacgtgctgg ccttccccct gaacgctccc tggcagcgaa gccgcgagat gacggcattc
     1501 ctgcgccggc tggcggcggc gcacgcggtg cctatccacg acggtctgct cagccaggcg
     1561 ggtcgagtcc tctatctggg acaggcgagc accctcgggt cgcctgacac gcagatccac
     1621 gacctggcgg gtgccggcgc taccgagttt tgaatgtgtt gacccaacgt tcgggtcaac
     1681 gcttgggaga accctgcgga caacctcgtg ggttcagtga tgtcccgggc cgcgcaccgg
     1741 tagcgtcgcg accatgccgg acccccagcc tgcgctgagc ctgcgcggtc tcaccaagta
     1801 cttcgatacc actctggccg tggaccagct gcacctcgac gtgccgcgtg gctccttcta
     1861 cggtctggtc ggtcccaacg gggcgggcaa gacgacgacc ctgtcgatgg ccacggggtt
     1921 gttgcgaccc gactccggca gcgctcaggt cctcggcgtg gatgtctggg cggatcccgt
     1981 agccgccaag gcccggatcg gggtgctccc cgacggtttg cgggttttcg accggctcac
     2041 cgggcgccag ctcgtgacgt atgccggttt gctgcgaggc atggaccggg ccatggtcca
     2101 cgagcgcgtc gaggagcttc tggtcgcctt ggggctggtc gaggccggcg acaagctggt
     2161 catcgactac tcggctggca tgaccaagaa ggtcacgctg gcctgcgccc tggtgcatgc
     2221 cccgcgactg ctcgtcctcg acgagccctt cgaggcggtg gacccggtat cggccaggac
     2281 catccgcggc atcctcgagg acttcgccgg cagtggtggg actgtcgtgc tgtcgagcca
     2341 cgtgatggac ctcgtggaac ggatctgcac ggacgtggcg atcatcgtcc aggggcgggt
     2401 ccgggtggct ggtcccgtcg agctcgtccg ggccggaggt tcactggagg accggttcct
     2461 cgacctcgtg ggtggccgca ccgatgtgca ggggctggcg tggttgcgca cctcctccga
     2521 ctgaagctca ccctgctgcg caacggcctt cgccgggggg tgtccgccat catcggcatg
     2581 gtcgtcggcc tgctctacgg cggggggttc gtcgtcgtgg ctctggtcgt cctggtgatg
     2641 ttgcgagcgc atggagaccc gtcggtgacc aggacggtcg tggtcctcgg a
//
LOCUS       DASYFY010000102        11988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_953296, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000102 DASYFY010000000
VERSION     DASYFY010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 11988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11988
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953296"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(735..807)
                     /locus_tag="VGN19_01945"
     tRNA            complement(735..807)
                     /locus_tag="VGN19_01945"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(772..774),aa:Lys,seq:ctt)
     gene            complement(878..1051)
                     /locus_tag="VGN19_01950"
     CDS             complement(878..1051)
                     /locus_tag="VGN19_01950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194678.1"
                     /translation="MTAMSVVAENAEPSRGEPTAVMALLERGIPLTLLMDLLDPFGPR
                     SEEILRTEGTDAA"
     gene            1382..2590
                     /locus_tag="VGN19_01955"
     CDS             1382..2590
                     /locus_tag="VGN19_01955"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEV7194679.1"
                     /translation="MNATLSAVEQVLDEHSANLVAFRRQLHAHPELSGEEYATTEAVL
                     TQLSALGLRPVRLRCGTGLVCDIGAGDPVVALRADIDALAMPDGKEVSYRSLVNGVAH
                     ACGHDVHTTVLLGVAMALLRVLTGSAVTGTVRLIFEPSEESVPGGAVDVVAEGWLDGV
                     AAIFGLHCDPKLDVGLVAVRPGAITSAADLVQIRLKGPGGHTARPHLTVDLLGAMGRI
                     LTEVPVRLEARRPGSLRLVFGSAHAGDAGNVIPAEGLVRGTLRTPDRDAWALAPGLVE
                     EAVADALEGTGATWEIEHHRGVPPVVNDPAATDVVAACARQALGKHAVAVAEHSWGGD
                     SFSWYTEKVPGSYFRLGVHATAPAGPRLDLHASTFDVDEAAIGHGVKVLAATAVAMLD
                     QLTTTTESAD"
     gene            complement(2587..4062)
                     /locus_tag="VGN19_01960"
     CDS             complement(2587..4062)
                     /locus_tag="VGN19_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HEV7194680.1"
                     /translation="MGDDVGERTFTREDRQRYRQKVQRCLDVFARMLAESRFDFDEPM
                     TGMEVELNLVDADGRPAMRNAEVLDRIDDPMFQPELGRFNLEINVPPRSLAGDGAARY
                     EAEVRDQLNAANDRALGAGAELVMIGTLPTLGPEHLTHQSISANPRYALLDEQMLLAR
                     GEDLHIDIRGPESLETWADSIAPEAACTSVQYHLQVSPDSFAQHWNAAQCLASVQVAL
                     AANSPYFLGRELWRETRIALFTQAADTRQAELKAQGVRPRVWFGERWITSVFDLFEEN
                     TRYFPALLPVIDPEDPVQVLESGGTPTLQELRLHNGTVWRWNRPVYDIVDGRPHLRVE
                     NRVLPAGPTVVDIMANAALYYGALRILADQDRPVWSQISFATAEENFIQCATRGIDAT
                     VFWPGSGEVPVTELVLRRLLPMAHAGLREWGVDDAIRERLLAVIEGRCTSGRNGATWQ
                     LAQVRWLESRGADRTEALRQMTHHYVELMHTNAPVHTWPVD"
     gene            complement(4213..4288)
                     /locus_tag="VGN19_01965"
     tRNA            complement(4213..4288)
                     /locus_tag="VGN19_01965"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4253..4255),aa:His,seq:gtg)
     gene            complement(4390..5067)
                     /gene="orn"
                     /locus_tag="VGN19_01970"
     CDS             complement(4390..5067)
                     /gene="orn"
                     /locus_tag="VGN19_01970"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HEV7194681.1"
                     /translation="MTDQGTGPTPGNTDPSTAASPKAADRIVWVDCEMTGLSLQHDAL
                     VEVACIVTDAELTELDEGVTIVIRPPDDALAQMPEIVQVMHTTSGLIEEIPHGTTLAA
                     AEAELLAYVRSHVTEPGKAQLAGSSVYVDRGFLARDMPDLDGWLHYRLIDVSSLKELA
                     RRWYPRIYFNSPPKNGGHRALADIRESIAELRYYREAMLVAPPGPDTPSTRAIAARHV
                     VTPARTA"
     gene            complement(5617..6465)
                     /locus_tag="VGN19_01975"
     CDS             complement(5617..6465)
                     /locus_tag="VGN19_01975"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEV7194682.1"
                     /translation="MVDRSVPALTRRTVMALVGSAVAGIAVAGCADNQSRAAVTTSPR
                     PLPPTPLGSGSPSPSTTSAPTKPVVPVVPGTLSTPISVRTKPVFKVHDILPNAPRNAI
                     ALTIDDGPVPYWTPKVLNVLERFNVKATFCTIGAQVHGRPWLPRAIASEGHGLANHSY
                     RHPLDLARLPPARIEQEVARASEAIHDATGVAPKLFRSPGGNWTTEVLTISARNGLLP
                     IDWDIDPVDWSRPGVPHITEKLLKAKPGDILLCHDGGGDRSETVAALTVVLPALKARG
                     LEFIRI"
     gene            complement(6521..8608)
                     /locus_tag="VGN19_01980"
     CDS             complement(6521..8608)
                     /locus_tag="VGN19_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194683.1"
                     /translation="MPGSTEVSDDRDVRPHLVAAPPTLAAGDTTFLERRPLGALWLAP
                     GLLGAAGAACWSTSPVIGVTLVVLGVVLVWRRRVPTHVAVIAVSVAYLALWCALGLVA
                     AISHLPMFTTSLGWWLGWAAVTGAAVVIGGRPLGWVAARRPVLGANTPGGPDVGLTRI
                     HGPARWAFAPAAAFALLASFQSLSAELAGRWLTLATDPMQLILLMQQMGREGALEYGR
                     NLGTSGDLAGEVYPKGLHWLITASLGPATDPSAASPETLALYLRTFAGFIWLSVALLL
                     CLAAGLFLAAARRWDLRTGTALASTGWLTALLVCVAQFGGVVVVQGAAASALAVGCVW
                     ALWWTALVQPRVRIVTAVVSSALFVTANMWQPMVPVMLVAGAVLLWPQRHGIRRWLRT
                     SLVRGWPAVAAVATVGTLAVAVTASPVTALLLAGGASVAAMPGGIQKPFLPSVGVEIA
                     LALAVLLRSRDGGHRQLLATIAGVAAATSIVWLIMAIAAGVQPFAYYPSKVLWFLTLS
                     GWPFVAGALGIATTHASSWLSGRRHPVRWITSKAPAAVACSGLALLSIVFWWGWRFPS
                     QLVAAATGNLTASVPMALSGLPVLPGGYYMPYLLGPATDRTRTQEYEAAKILAFRFGT
                     PYLPWGTQVPVCHILRSRSPVVLVTTQTRAIVSSALRDAHCTLTGWQMLQIPLRVSPA
                     VRFETSPHPRYRG"
     gene            complement(8713..>11988)
                     /locus_tag="VGN19_01985"
     CDS             complement(8713..>11988)
                     /locus_tag="VGN19_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEV7194684.1"
                     /translation="SELSRNRPSEADPADERVHSPREHFHTYLQSLDFERGRLPENFR
                     SKLMNVLRHYGVTDLDRSPELEEAVFRRFLAQQSQSVDVAVVTTLLKEWMSEDRPAPE
                     LEDSARRVLDHLVQATQLRFPVVGDLARGVRFRWFDQPVVEDARSDALAGMLDELESL
                     AHLPEGPDRSARIEALAAIPEQIVRFLSERMQAGIPATEPMLEILTRRHYREYQLHDL
                     TSLQEAGRPSVVADYTLDERPTHVVTTLGRFDELDDAGSGDGLVSALSAQVAARPPGH
                     EAVVDLYLGWPSAPESVKEMSDTLQEQVARLPFSQDVRRVAVAVCAVPGRSVTYFTFR
                     PVGGRIVEDELVRGVHPMVGRRLNLWRLRDFDITRLDAPEDVLLYHCVARNNASDQRL
                     VALAQIRQFTVVRDDLGRVVSLPYAERAVANCLEGIRHARAARGAAGARLDMNHVWLH
                     IWPVVDAQVDELAALQRIIAPLTVGAGIEEVLAQASIATPDGVFPICARFSYQLGAGV
                     VSSVEPPPTELLKPLDDYAQKQLRARRRGNVYPYELAEMVAGKDGSFVEYDLLAGDRL
                     ELVDRAYGGNKAGLVVGLVTTSTERNPQGMTRVALLGDPTMALGAVSEAECARVIAAL
                     DLAETLSVPLEWYALSAGARISMDSGTENMDWVAKALKRIVEFTQAGGEINVIVAGIN
                     VGAQPYWNAEATMLMHTKGILVMTPDSAMVLTGKQSLDFSGGVSAEDNFGIGGYDRVM
                     GPNGQAQYWAPTLAAAQELLMQHYDHSYVVPGEDRPRRTTTTDPVDRDISSFPHSVPD
                     SDFTTVGEIFSLSTNPDRKKAFDIRTLMRSVIDQDHPPLERWAGMADAETAVVLDAHL
                     GGWPVCLVGIESRSVPRRGFPPSDGPDTYTAGTLFPRSSKKVARAVNTASGNRPLVVL
                     ANLSGFDGSPDSMRNLQLEYGAEIGRAVVNFVGPIVFCVVSRYHGGAFVVFSKALNPN
                     MTVLAVEGSFASVIGGAPAAAVVFSRDVDARTTADRRVSDLEARVALASGAERAALAT
                     ELAQTRTSVRAEKLGEVASEFDGVHSIQRAVTVGSVDAVIAAHELRPELVAAVARGLE
                     SAG"
BASE COUNT         1876 a         4120 c         4193 g         1799 t
ORIGIN      
        1 ccccggtggc gcgcaggaat gtccacgctt gcagggtgtg gcgagactcc aagtcgggtg
       61 catctgcgat cccccgccag gtagccacag cgtcgtctct ctgaccggcc gcgagtgctt
      121 gcctcgcccg aacgaaagac gcccaaggct ctccctcatc gggcggcgac tcaggcggcc
      181 actgatcgag tgggaggtct ccgagcagga ggggttggag ggcgctggca gccgaacccc
      241 caccattgtc ggcccgcgtt tcggcctttc gccgtccgaa caatggcacc ctgactcacc
      301 tgtccctcgt cgtggatcgc agccgcacat actgccggat attgctcgcc cacgcggcac
      361 atcagaaact cgattcgcca ccgctccatc ccgtccgcgt cgtgggagac acgcgttccg
      421 acagccgggc cgggaccagc acgagggcca actgtgacca ccgccggacc gccgctgccc
      481 gaactggcct ttccggggtc gagtcccttc gaggcccgga cgaccggctt cgacggccgg
      541 acccctcacc gcctagccgc tcggcgcgtt accagacgga cgggcgtctc gccagcctca
      601 aaccggccat tgcctcgggc ccgaccctaa gagcgacgcc taccccatgg acgcccctag
      661 cgaaagccct agcaaatcgc gtccggatcc tcgcgagagg acgtctgagg aagcatctca
      721 gcaggtcaga tgtgtgcgcc gccagggact tgaaccccga acccgctgat taagagtcag
      781 ctgctctgcc aattgagcta gcggcgcatg gtgcccgtgg acagtaccaa acgaagaggt
      841 ccgcaacgaa accgcctcga ccgcagatcc gggccggcta cgccgcgtcg gtgccctcgg
      901 ttcgcaggat ctcctccgac ctcggcccga acggatcgag caggtccatc aacagcgtca
      961 gggggatgcc gcgctccagc agggccatga ccgcagtggg ctcgcccctg ctcggctcag
     1021 cgttctcggc gaccacagac atggctgtca cggcttctcg tcccttcgca caaatatcgc
     1081 atcgggcagt tcgctcgttg acattgtgcg ccgaaagggt ggcgggtccg ctcaggcgag
     1141 ctgctctcgg cgtgtcgcgc tccgtaccta tcaaactact aagagtaatc agactgatgc
     1201 gtaaggcttg aggctccgaa tggggggaat cagtggtgac ccggacgcgg ggggacgtcg
     1261 cccgggccac cggcctgatg ggacaagcct ggcccctgcc gccacagtag gcaactccgg
     1321 gtggggatcg ccgctgccgg ccccggctcg taggctcgcg ggcgtgccgc ccccttcgtc
     1381 tgtgaacgcc accctctcgg ccgtcgagca ggtgctcgac gagcacagtg cgaacctggt
     1441 ggcgttccgg cgccagctcc atgcccaccc cgagctgagc ggcgaggagt acgccaccac
     1501 cgaggcagtg ctgacgcagc tgtcggccct cgggctgcgc ccggtccggt tgcgctgcgg
     1561 cacggggctg gtgtgtgaca tcggcgccgg agatcccgtg gtggcactgc gagccgacat
     1621 cgacgccctg gccatgccgg acggcaagga ggtctcgtac cgctctctcg tgaacggggt
     1681 tgcgcacgcc tgcgggcacg acgtgcacac caccgtcctt ctcggtgttg ccatggcgct
     1741 gctgcgggtc ctgaccgggt cggcggtgac gggcacggtc cggctcatct tcgaaccgag
     1801 cgaggagagc gtgcctggcg gcgccgtcga tgtcgtggcc gagggctggc tcgacggcgt
     1861 cgcggccatc ttcgggctgc actgcgatcc gaagctcgac gtcggcctcg tagcggtgcg
     1921 tcccggtgcg atcacctcgg ccgcggacct ggtgcagatc cggctcaagg gcccgggtgg
     1981 tcataccgcc cggccccacc tcactgtcga cctgctgggc gcgatgggtc ggatcctcac
     2041 cgaggtgccg gtacggctcg aggctcgccg gcccggctcc ctgcggctgg tgttcggcag
     2101 cgcccacgcc ggcgacgccg gcaacgtgat cccggccgaa ggtctggtgc gcgggacgct
     2161 gcggaccccg gatcgcgacg cctgggcgct ggcacccggt ctggtcgagg aggcagtcgc
     2221 tgacgcgctg gaaggcactg gcgccacctg ggagatcgaa caccatcgcg gggtcccacc
     2281 ggtcgtgaat gacccggccg ccacggacgt cgtggcggcc tgtgctcggc aggcgctcgg
     2341 gaagcacgcc gtggccgtcg cagagcactc gtggggcggt gactcgttct cctggtacac
     2401 cgagaaggtg ccggggtcct acttccgcct cggggtccac gccacggccc cggccggacc
     2461 ccgacttgac ctgcacgcca gcaccttcga cgtggacgag gctgcgatcg gccacggagt
     2521 caaggtgttg gccgcaacag cggtcgcgat gctcgatcag ctcaccacga cgaccgagtc
     2581 cgcggactag tcgaccggcc aggtgtgcac aggtgcgttg gtgtgcatga gctcgacata
     2641 gtggtgggtc atctggcgca gggcctcggt acggtccgcc ccccgggact cgagccagcg
     2701 aacctgagcg agctgccagg tggcgccatt gcgaccggat gtgcacctgc cctcgatgac
     2761 tgcgagcagt cgctcccgga tcgcgtcgtc cactccccac tcccgaagcc ccgcatgcgc
     2821 catcgggagc aggcgacgca gcaccagctc ggtgacaggc acctcacccg acccgggcca
     2881 gaacaccgtc gcgtcgatgc ctctggtcgc gcactggatg aagttctcct cggccgtggc
     2941 gaacgagatc tgcgaccaca ccgggcggtc ctggtccgcc aggatccgca gcgcgccgta
     3001 gtacaacgcg gcgttggcca tgatgtccac gacggtcggg ccggccggga gcacccggtt
     3061 ctccacccgc aggtgcggac ggccgtcgac gatgtcgtac accggccggt tccagcgcca
     3121 caccgtcccg ttgtggagcc ggagctcttg cagtgtgggc gtgcccccgc tctccaggac
     3181 ctgcaccgga tcctccgggt cgatgaccgg cagcagagcg gggaagtagc gggtgttctc
     3241 ctcgaacagg tcgaacacgc tcgtgatcca gcgctccccg aaccacactc gggggcgtac
     3301 gccctgcgcc ttcagctcgg cctgccgggt gtccgccgcc tgggtgaaca gcgcgatacg
     3361 ggtctcgcgc cacagctcgc gtcccaggaa gtacgggctg ttggccgcca gcgccacctg
     3421 gaccgacgcg aggcactggg ccgcgttcca gtgctgcgcg aagctgtccg ggctcacctg
     3481 caggtggtac tgcacgctcg tgcacgcagc ctccggggcg atcgagtcgg cccacgtctc
     3541 caacgactcc gggcctcgga tgtcgatgtg caggtcctcg ccgcgcgcca gcagcatctg
     3601 ctcgtcgagc agggcgtacc gcgggttcgc gctgatggat tggtgcgtca ggtgttctgg
     3661 tcccagcgtc ggcagggtgc cgatcatcac cagctccgcg ccagccccga gggcacggtc
     3721 gttcgccgcg ttgagctggt cgcggacttc ggcctcgtac ctggcggcac catccccggc
     3781 gaggctgcgc ggcggcacgt tgatctcgag gttgaaccgg ccgagctcgg gctggaacat
     3841 cgggtcgtcg atccggtcga ggacctccgc gttgcgcatc gcgggccgac cgtcggcgtc
     3901 gacgagattg agctcgacct ccatgcccgt catcggttcg tcgaagtcga accgggactc
     3961 ggccagcatc cgagcgaaca cgtcgaggca gcgctgcacc ttctgccggt aacgttgccg
     4021 atcctcgcgc gtgaaggtcc gctcgccgac gtcgtcaccc atgccgacga gcctgccgta
     4081 cgtctcgtcc gtccgcagcc acggccgcga actcggtctc gctcgtcctc cttggggtgc
     4141 tcggcgcttt gcgcctgcga ccccgtcgtc gtcctcggca gttcgagcaa gctcgactgc
     4201 tctcgtcctc cttggggtgg acgacgggac ttgaacccgc gaccgctcgg accacaaccg
     4261 agagctctac cagctgagct acgcccacca agcgaccgcg gtcagcatgt tctggccgcg
     4321 atcgcaagaa ctataccggg cccaggccgg cgtcccggcg ggcactgttt cccgcgtgga
     4381 tggggctcgt caggcggtac gggccggggt aaccacgtgc ctggcagcga tggcgcgggt
     4441 gctgggggtg tccgggccag gcggtgccac gagcatggcc tcgcggtagt agcgcagctc
     4501 ggcgatcgac tcgcggatgt ccgcgagcgc ccggtggccg ccgttcttgg gcgggctgtt
     4561 gaagtagatg cgcggatacc accgccgcgc cagctccttc agggacgaca cgtcgatgag
     4621 gcggtagtgc agccagccgt cgagatcggg catgtcgcga gccaggaagc cgcggtcgac
     4681 gtacacgctc gagccggcga gctgggcctt gccgggctcc gtgacgtggg accggacgta
     4741 cgccaacagc tcggcctcgg ccgcggcaag ggtggtgccg tgggggatct cctcgatcag
     4801 gcccgacgtc gtgtgcatga cctggacgat ctcgggcatc tgggccagcg catcatccgg
     4861 ggggcggatg acgatcgtca caccctcgtc gagctcggtg agctctgcgt cggtgacgat
     4921 gcaggccacc tcgacaaggg cgtcgtgctg cagcgacagc ccggtcatct cgcagtccac
     4981 ccacacgatc cggtcggccg ccttcgggga agccgcggtc gaggggtcag tgttaccggg
     5041 ggtgggacct gtgccctggt cggtcatggc gccagcctag acagggggtc gggtgccgga
     5101 cgccagctac tggccgagtc ccggagatga ccggctcgcg aggcccgggc tgtggacact
     5161 tctggggaca acctgggggt cacgagctgg tttcggtgca taagctgtgt acagcttgga
     5221 tctccagaaa aactttccgg aaacccttgc gccgtaacgc cagctgcgaa tacaaatacc
     5281 ccaccagcaa ggcaggcgag tcgacgggcc gcaaggtccg agacgcgggg aagccgagaa
     5341 atcggtggac cagcggattc gccgccagat ggtggcacca cggacgtggt tgcgtgcggc
     5401 gcctcggcgc tgtgcgtggc cgggaatgcg gtgcagacgg gcccctcgat ctcatacatc
     5461 gaggggcccg tcctccatgc gggccctgaa ccgggcgtag cgttcagtac cgcatggtta
     5521 ttgctccgag cccatcgtgc cctgacggag ccaggatcct gcgatggaca cgccgggaac
     5581 cctcggtgag cggccgaacg ctggtggtcc gccggctcag atgcggatga attcgagtcc
     5641 gcgcgccttc agcgccggca gcacgaccgt gagcgcggcg acggtctcgc tgcggtcccc
     5701 gccgccgtcg tgacagagca ggatgtcgcc gggcttggcc ttcagcagct tctctgtgat
     5761 gtgcggaaca cctggtctgg accagtccac cgggtcgatg tcccagtcga tcgggagcag
     5821 cccgttccgc gcggagatcg tcaggacctc tgtcgtccag ttcccgccgg gggagcggaa
     5881 cagcttgggc gcgacgccgg tggcgtcgtg gatggcttcc gaggcccgcg ccacctcttg
     5941 ctcgatcctg gccggcggca gccgggccag gtccagcgga tgtcgatagc tgtggttcgc
     6001 gagcccgtga ccctccgagg cgatggcccg cgggagccac ggcctaccgt gcacctgcgc
     6061 cccgatcgtg cagaacgtgg ccttcacgtt gaagcgctct aggacgttca gcaccttcgg
     6121 ggtccagtac ggcaccggcc cgtcgtcgat ggtgagcgca atggcattgc gcggggcgtt
     6181 cgggaggatg tcatgcacct tgaacaccgg cttggtgcgg acgctgatcg gggtgctcag
     6241 cgtccccggc accactggga cgaccggctt ggtcggcgcg ctggttgtcg atggagacgg
     6301 agacccgctc cccagcggtg tcgggggcag tggtcgaggg ctggtcgtga cggcggcccg
     6361 actctggttg tccgcgcacc cggccaccgc gatcccggcg acagcgcttc ccaccagggc
     6421 catcactgtc cgtctcgtca gcgcgggcac tgaccgatca accacagaaa ctccttgtcg
     6481 gacacagatc atgcgttggc ctggtgtcac cgtgtcgtgc tcagccacga taacgcgggt
     6541 gcggcgaggt ttcgaacctg actgcgggtg acacccggag cgggatctgc agcatctgcc
     6601 aaccggtgag cgtgcagtgt gcgtcgcgta gggcgctgga cacgatggct cgcgtctggg
     6661 tggtgacgag caccacgggg gagcgggacc gcaggatgtg gcagacgggc acctgggtac
     6721 cccagggcag atagggggtg ccgaaccgga acgccaggat cttggcggcc tcgtactcct
     6781 gggtcctcgt gcggtccgtg gccgggccga gcaggtacgg catgtagtac ccgccgggca
     6841 ggaccggcag gccgctcaga gccattggta ccgatgccgt caggtttccg gtggccgcgg
     6901 cgacgagctg tgacgggaac cgccaccccc accagaacac gatgctcaac agggcgagac
     6961 ctgaacaagc gactgcggct ggcgccttcg acgtgatcca gcgcaccggg tggcggcgac
     7021 cggacagcca ggaactggcg tgggtcgtgg caatgccgag tgcgcccgcc acgaacggcc
     7081 atcccgaaag cgtgaggaac cacaatactt ttgaggggta gtaggcgaag ggttgtacgc
     7141 cggcggcgat cgccattatc agccagacga tcgacgtcgc ggccgcgacc ccggcgatcg
     7201 tcgcgaggag ctggcggtgg cctccatcgc gagaacgaag gagcaccgcc agggcaagtg
     7261 cgatctccac gccgacggag ggaaggaacg gcttctggat cccgccgggc atggcggcaa
     7321 ccgacgcacc cccggccagc agaagggctg tcaccggact cgccgtcacc gcgacggcaa
     7381 gcgtgcccac tgtggcgacc gcggcgacgg ccggccaccc acggaccagg ctggtgcgca
     7441 gccaccgtcg gatcccgtga cgctgtggcc agagcaggac ggcgccggcc acgagcatga
     7501 ccggcaccat cggctgccac atgttcgctg tgacgaacag ggcagacgac acgacggcgg
     7561 tgacgatccg gacgcgtggt tggacgagcg cggtccacca cagggcccat acgcagccga
     7621 cggcaagcgc ggaggcagcg gcgccctgca ccacgacgac gcccccgaac tgcgccacgc
     7681 agaccagcag tgcggtcagc cagccggtcg aggcgagcgc cgtcccggtg cgcaggtccc
     7741 agcgcctggc ggcggcgagg aacagccccg cggccaggca cagcaacagg gcgaccgaga
     7801 gccagatgaa cccggcgaag gtgcgtaggt agagggccaa cgtctccggc gaggcagccg
     7861 atgggtcggt cgccggaccg agagaggcgg tgatcaacca gtgcaggccc ttggggtaca
     7921 cctcgccggc caggtcgccg gacgtgccca ggttgcggcc gtactccagc gccccctccc
     7981 gccccatctg ctgcatgagc aggatcagct gcatcgggtc ggtggccagg gtcagccagc
     8041 gaccggcgag ctcggccgac agcgactgga acgaggcgag aagcgcgaac gcggctgcgg
     8101 gtgcgaaggc ccagcgcgcc ggcccgtgta tccgagtgag gccaacatcc gggccgccgg
     8161 gcgtgttcgc accgagaacc gggcgccgcg ccgcgaccca gcccagcggg cggcctccga
     8221 tcacgacggc cgcgccggtg accgctgccc agccgagcca ccagccgagc gaggtggtga
     8281 acatcggcag atggctgatc gccgcgacaa ggccaagcgc acaccacagg gccaggtacg
     8341 cgaccgacac cgcgatcaca gcgacgtgcg tgggcacccg gcgtcgccac acgagcacga
     8401 ccccgagcac caccaacgtg acgccgatga ccgggctcgt gctccagcag gcggcgcctg
     8461 cagcccccaa cagtcccggt gccaaccaga gcgcgccgag gggtcggcgc tccaggaagg
     8521 tcgtatcgcc ggctgcgagg gttggtggtg ccgcgacgag gtgggggcgt acgtctcggt
     8581 cgtccgacac ctctgtcgac cccggcacca gcacctccat gcatgagccc gccttggttg
     8641 ggacgccccg ggcggtggcg gcgttcccgg ctcacgctgc cgagggacgc aggcgggtcg
     8701 agggtcgacc ggtcagccgg cggactccag gccgcgagcg accgctgcca ccagctcggg
     8761 tcgcagctcg tgggccgcta tgacggcgtc gaccgatccc acggtcactg cgcgctggat
     8821 gctgtggacg ccgtcgaact ccgaggccac ctcgccgagc ttctccgccc gcacgctggt
     8881 ccgtgtctgg gccagttccg tggcgagggc ggcacgctcc gcaccggacg ccagcgccac
     8941 ccgcgcctcc aggtcgctca cgcggcgatc cgccgtcgtc cgggcatcga cgtcgcgcga
     9001 gaagaccaca gcggcggccg gggccccacc gatcaccgac gcgaacgagc cctccaccgc
     9061 gagcaccgtc atgttggggt tcagcgcctt ggagaagacg acgaacgctc cgccgtggta
     9121 tcgcgacacc acgcagaaca cgatgggacc tacgaagttg acgaccgccc gcccgatctc
     9181 ggcgccgtac tccagctgca ggttgcgcat cgagtccggt gagccgtcga agccggacag
     9241 gttcgccagg acgaccagcg gccggttgcc gctggcggtg ttcaccgccc gggcgacctt
     9301 cttggacgag cgggggaaga gcgttcccgc ggtgtacgtg tccggtccgt ccgagggcgg
     9361 gaaaccacgg cgggggaccg agcgcgactc gatacccacc aggcacaccg gccacccgcc
     9421 caggtgcgcg tcgagcacga ccgccgtctc ggcgtcggcc atcccggccc accgctccag
     9481 gggcgggtgg tcctgatcga tcaccgagcg catcagcgtg cggatgtcga aagccttctt
     9541 gcggtcgggg ttcgtgctca gcgagaagat ctcgccgaca gtcgtgaagt cgctgtccgg
     9601 caccgagtgc gggaaggagc tgatgtctcg atcgacgggg tccgtggtgg tcgtgcgcct
     9661 gggccggtcc tcgcccggga ccacgtacga gtggtcgtag tgctgcatca ggagctcctg
     9721 ggcagcggcc agcgtcggcg cccagtactg cgcctgcccg ttgggcccca tcacgcggtc
     9781 gtagccgccg atgccgaagt tgtcctcggc cgagacaccg ccggagaagt cgagcgactg
     9841 cttgccggtg agcaccatcg cgctgtccgg cgtcatcacg agaatgccct tggtgtgcat
     9901 cagcatcgtg gcctcggcgt tccagtacgg ctgggcaccg acgttgatcc cggcgacgat
     9961 gacgttgatc tcgcccccgg cctgtgtgaa ctccacgatg cgcttgaggg ccttggccac
    10021 ccagtccatg ttctctgtac cggagtccat ggagatgcgg gcgcccgcgg acagggcgta
    10081 ccactcgagg gggacggaca gggtctcggc gaggtcgagc gcggcgatga cgcgtgcgca
    10141 ctcggcctcc gacacggcgc cgagtgccat cgtcgggtcg ccgagcaggg cgacgcgggt
    10201 catgccctgg gggttgcgct ccgtgctggt cgtgacgagt ccgacgacca gcccggcctt
    10261 gttgcctccg tacgcccgat cgacgagctc gagccgatcg cctgccagca ggtcgtactc
    10321 gacgaagctg ccgtccttgc cggcgaccat ctccgcgagc tcgtacggat agacgttgcc
    10381 gcgccggcgc gcccgcagct gcttctgggc atagtcgtcg agtggtttca gcagctcggt
    10441 gggaggcggc tcgaccgagg acacgacacc ggccccgagc tggtaggaga accgcgcgca
    10501 gatcgggaag actccgtcgg gggtggcgat cgacgcctgt gcgagcactt cctcgatacc
    10561 ggctccgacc gtcagtggcg cgatgatgcg ttgcagcgca gcgagttcgt caacctgcgc
    10621 atcgacgact ggccagatgt gcagccagac gtggttcatg tccaggcggg cgccggcggc
    10681 tccccgggcg gcccgggcgt gcctgatccc ctcgaggcag ttcgccacgg cacgctcggc
    10741 gtacggcagc gacacgaccc ggcccaggtc gtcgcgcacg accgtgaact gccggatctg
    10801 tgccagcgcg accagccgct ggtcggacgc gttgttccgc gcgacacagt gatacagcag
    10861 gacgtcctcg ggagcatcga gccgggtgat gtcgaagtcg cgcaaccgcc ataggttcag
    10921 gcgtcgacct accatggggt ggactccacg gaccagctcg tcctcgacga ttcggccgcc
    10981 cacggggcgg aacgtgaagt acgtgaccga ccggcccgga acggcgcaca ccgcgacggc
    11041 cacccgtcgc acgtcctgcg agaacggcag ccgggccacc tgctcctgaa gagtgtcgga
    11101 catctccttc acggactccg gggcgctggg ccagccgagg tacaggtcga ccactgcctc
    11161 gtgccccggc gggcgggccg ccacctgcgc cgagagtgcg gacacgagcc cgtccccgga
    11221 cccggcgtcg tcgagctcgt cgaacctgcc cagggtcgtc acgacatgcg tgggccgctc
    11281 gtccagggtg tagtcggcca ccacggacgg gcggccagct tcttgcaggg aagtgaggtc
    11341 gtgcagctgg tactcgcggt agtggcggcg ggtgaggatc tcgagcatgg gttccgtggc
    11401 cgggatcccg gcctgcatcc gctcggacag gaaccgcacg atctgttccg gaatcgctgc
    11461 cagcgcctcg atccgggcgc tgcggtccgg tccttccggc aggtgcgcca acgactccag
    11521 ctcgtcgagc atgccggcca gtgcgtccga gcgggcgtcc tcgacgacgg gctggtcgaa
    11581 ccagcggaac cgcacgccac gggcgaggtc cccgaccacg gggaagcgca gctgggttgc
    11641 ctgcacaaga tggtccagga cccggcgggc actgtcctcg agctcggggg cgggccgatc
    11701 ctcggacatc cactccttga gcagcgtcgt gacgacggcg acgtcgaccg actggctctg
    11761 ctgggccagg aagcgccgga acaccgcctc ctccagctcg ggggagcggt ccaggtcggt
    11821 gacgccatag tggcgcagca cgttcatcaa cttgctgcgg aagttctccg gcagccgtcc
    11881 ccgctcgaag tccaggctct gcaggtaggt gtggaagtgc tcgcgggggc tgtggacccg
    11941 ctcgtcggcc gggtcggcct cggagggccg gttgcggctc agctcgct
//
LOCUS       DASYFY010000103         2688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_533208, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000103 DASYFY010000000
VERSION     DASYFY010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533208"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..944)
                     /locus_tag="VGN19_01990"
     CDS             complement(<1..944)
                     /locus_tag="VGN19_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7194685.1"
                     /translation="MTLALTFLGAAGTVTGSKFLLEHGDSRVLVDCGLYQGERQWRRM
                     NWEPLGQEPSAITDVVLTHAHLDHCGYLPALVRQGFAGPVWATAGTCALADIVLRDSA
                     HLQEEEALFAQRSGYSRHDPPQPLYTVVDAERSVRRLQPCEYGQPTILRSGAQLSLSR
                     AGHVLGSASALVSFGDAQVLFSGDLGRPQHPLLRARSSPPASRTVVIESTYGDRRHPQ
                     VDAQDHEVLGEAIRRTIGRGGSVVIPAFAVDRTELVLLALARLQTAGSIPEVPIYVDS
                     PMALAALDVYQRPDLAGELRPEGLQDLAGLRGVREARSP"
     gene            complement(978..>2688)
                     /locus_tag="VGN19_01995"
     CDS             complement(978..>2688)
                     /locus_tag="VGN19_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HEV7194686.1"
                     /translation="RLWILQTRVGKRSPAAAFVIAADLATEGIVTVDEALARVDGHQL
                     ESLLHDQFDLQSPRPGIALGLPASPGASVGEAVFDSDSAVAAASEGKAVVLVRAETSA
                     EDLPGILASCAIVTARGGLASHAAVVARGFGRTCVTGVEGMVVDEAARTAQMRSGAVV
                     HHGDVLSVDGTTGTVYAGALPIRPSSVASALTAGDNQSGQSGRDAVVASVQVLLGHAD
                     SRARLTVMANTETGPEAAQARRLGAQGIGLCRTEHMLLGARRHLVERVVVGDDRPGAL
                     AEIERIAVEEFTQLLHVMDGLPVVIRLLDPPLHEFLPDCEDLAVEAAQQASTGRVDPA
                     LTARLAAARRWQQVNPMLGLRGVRLLTVLPELVDVHVRALLSAANALRTDGFDPRPEI
                     MVPLVADPAEFAAARRRIVQHVEGAGRTSVPIPIGVMIELPRAALRAGDLARLADFFS
                     FGTNDLTQTTWGISRDDAQTSFLSAYRSSGLLNRDPFENLDEVGVGELIRMAIQRGRH
                     AKASIGLGACGEHAGDPDSIHFFARAGLDYVSCSPPRVAIARLEAGRAEVLAGSASSS
                     DTR"
BASE COUNT          431 a          910 c          957 g          390 t
ORIGIN      
        1 ggggagcgcg cctcgcgaac cccgcggagc cccgccaggt cttgcagacc ctcgggacgc
       61 agctcgccag ccaggtctgg gcgctggtag acgtcgagtg ctgccagggc catcgggctg
      121 tccacgtaga tggggacctc ggggatggag cccgccgtct gaaggcgagc cagggcaagg
      181 aggacaagct cggtgcggtc gacggcgaag gctgggatga ccacagagcc cccacggccg
      241 atcgtgcggc gaatcgcctc cccgagtacc tcgtggtcct gcgcgtccac ctgagggtgg
      301 cgccggtcgc catatgtcga ctcgatcacc accgtgcgcg aggcgggggg tgaggagcgt
      361 gcccgcagca gcggatgctg cggtcggccg agatcgccgg aaaacagcac ctgagcgtcc
      421 ccgaagctca ccagggcaga tgcggaaccg aggacatgcc cggcccgaga caggctgagc
      481 tgagcgccgg agcgcagtat cgtcggctgc ccgtactcgc acggctgcag tcggcgcacg
      541 gagcgttcgg cgtcgaccac ggtgtacagc ggctgcggcg ggtcatgccg tgaatagcct
      601 gaacgctggg cgaacagggc ttcctcctct tgcaggtggg cgctgtcgcg cagaacgatg
      661 tcggccagcg cgcaggtccc cgccgtcgcc cagaccggcc ccgcgaagcc ttgccgtacc
      721 agagccggta ggtacccgca gtggtcgagg tgggcgtgcg tgagcaccac gtcggtgatc
      781 gcactcggct cctgacccag cggctcccag ttcattcgac gccattggcg ttcaccctgg
      841 taaaggccac agtccacgag cacccgtgag tcgccatgct caagcaggaa cttgctgccg
      901 gtcaccgttc cggcagcgcc gagaaaagtc agtgcgaggg tcatgccagc ctccttcgtc
      961 ggatcggaac gtgggcatca gcgagtgtcg ctggagctgg cgctgccggc gaggacctca
     1021 gcgcgcccgg cctccaagcg ggcgatggca acccggggtg gtgagcagga gacgtagtcc
     1081 aggcccgccc gggcgaagaa gtggatggag tcggggtcgc ccgcgtgctc accacaggcg
     1141 ccgagcccga tgctcgcctt ggcgtgtcgt ccgcgctgga tcgccattcg aatgagctcg
     1201 ccgacgccga cctcgtccag gttctcgaag gggtcgcggt tcagcaaccc cgaggaccgg
     1261 tacgcggaga ggaagctggt ctgggcgtcg tccctggaga tgccccacgt ggtttgggtc
     1321 aggtcgttcg tgccgaacga gaagaagtcg gccaagcgtg ccaggtcccc ggccctcagc
     1381 gcggcccgag gcagctcgat catcaccccg atcggaatgg gaaccgacgt gcggccagcc
     1441 ccctcaacgt gctgcacgat gcgtcgccgc gccgcggcaa actcggctgg gtctgcgacg
     1501 aggggcacca tgatctcggg ccgcgggtcg aatccgtctg tcctgagggc gtttgcggcg
     1561 gacaggaggg cgcgaacatg gacgtcgacg agctcgggta ggacggtcag caggcgaacc
     1621 cctcgcagcc cgagcatggg gttcacctgt tgccagcgtc gcgcggccgc caggcgcgcc
     1681 gtgagggccg ggtcgacccg gccggtcgag gcctgttgcg ctgcctcgac cgcaaggtct
     1741 tcgcagtcgg ggaggaactc gtgcagaggg ggatccaaca gtcgtatgac cacaggtagc
     1801 ccgtccatca cgtgcaggag ctgggtgaac tcctcgacgg cgatgcgctc gatctcggct
     1861 agggctccgg gccggtcatc gcccacgacg acccgttcca caaggtggcg gcgcgcgccc
     1921 agaagcatgt gctcggtccg gcacagcccg atgccttgag cgccgaggcg gcgagcctga
     1981 gctgcttcgg ggcccgtctc ggtattcgcc atgaccgtca gtcgcgcgcg actgtcggcg
     2041 tggccgagca gcacctgcac cgacgcgacg acggcgtccc tgccgctctg cccagactgg
     2101 ttgtcaccgg ccgtcagggc agacgcgacg gaactcggtc gaataggcag cgcaccggca
     2161 tacacagttc cggtggtgcc gtccacggag agcacgtccc cgtggtggac cacggccccg
     2221 gaccgcatct gggccgtacg ggctgcctca tcgacgacca tgccctcaac cccggtgacg
     2281 cacgtgcgtc cgaaccccct ggcgaccacg gccgcgtggg aggccaggcc gcctctggcc
     2341 gtgactatgg cgcacgaggc gagtatgccg ggcaggtcct cagcactggt ctcagcacgt
     2401 accaggacca ctgccttgcc ttcactggcc gcggcgacgg cgctgtcgga gtcgaagacc
     2461 gcttcgccca ccgaggcgcc tggactcgcc ggtaggccga gggcgatccc ggggcgcggg
     2521 ctctgcaggt cgaactggtc gtgcagcaag gactcaagct ggtgaccgtc cacccgtgcg
     2581 agggcctcgt ccacggtgac gatcccttcc gtggccaggt cggcggcgat cacgaaggcc
     2641 gccgccgggc tgcgcttgcc cacgcgggtc tgcaggatcc acagcctg
//
LOCUS       DASYFY010000104         1639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_585669, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000104 DASYFY010000000
VERSION     DASYFY010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585669"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1595
                     /gene="rho"
                     /locus_tag="VGN19_02000"
     CDS             <1..1595
                     /gene="rho"
                     /locus_tag="VGN19_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEV7194687.1"
                     /translation="QDGDTRRNRDDQQDDYQQDERQQGDRQQGARQGQYRGDRQNDRQ
                     QTDRQGQGERQQSDRQQGNRQNDRQGQGERQSDRQSDRQQDDRRSDRQDQGQGGPRDD
                     DGDADGRGGRRRSRNRNRSRDKRGSRVRGDFGGDYDHEPQLTEDDVLVPVAGILDVLD
                     NYAFVRTSGYLPGPGDVYVPLGLVKKNGMRKGDAVTGAVKAQRETDQQNQRQKFNALV
                     RLDTVNGMSPDDARKRVEFGKLTPLYPQQRLRLETDPNLITTRVIDLVAPIGKGQRGL
                     IVAPAKAGKTMVMQAIANAITTNNPECHLMVVLVDERPEEVTDMQRAVKGEVISSTFD
                     RPADDHTTVAELAIERAKRLVEMGHDVVVLLDSITKLGRAYNLSAPASGRILSGGVDS
                     AALYPPKKFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLDRGL
                     ANRRIFPAVDVNNSGTRKEEILLSSEELKIMWKLRRVLAALDQQQGIELLIDRLKKTK
                     SNVEFLMQVQQNSSLKPHDENG"
BASE COUNT          324 a          592 c          531 g          192 t
ORIGIN      
        1 gtcaggacgg cgacacccgc cgcaaccgtg acgaccagca ggacgactac cagcaggatg
       61 agcgccagca gggcgaccgc cagcagggcg cccgccaggg ccagtaccgc ggcgaccgcc
      121 agaacgaccg ccagcagacc gaccgtcaag gtcagggcga gcgtcagcag agcgaccgcc
      181 agcagggcaa ccgccagaac gaccgtcagg gtcagggcga gcgccagagc gaccgccaga
      241 gcgaccgtca gcaggacgac cgccgcagcg accgtcagga ccaggggcag ggcggtccgc
      301 gtgacgacga cggcgacgca gacggccgcg gcggacgccg tcgtagccgc aaccgcaacc
      361 ggagccgcga caagcgcggc agccgcgtgc gtggcgactt cggcggtgac tacgaccacg
      421 agccgcagct caccgaggac gatgtcctcg ttcccgtggc gggcatcctg gacgtcctcg
      481 acaactacgc cttcgtccgc acctcgggct acctgccagg ccccggcgac gtctacgtcc
      541 cgctcggcct ggtcaagaag aacggaatgc gcaagggcga cgccgtcacc ggcgcggtga
      601 aggcgcagcg cgagaccgac cagcagaacc agcgccagaa gttcaacgcc ctggtccgcc
      661 tcgacacggt caacggcatg agccccgacg acgcccgcaa gcgtgtcgag ttcggcaagc
      721 tcaccccgct gtacccgcag cagcgcctgc gcctcgagac tgacccgaac ctcatcacca
      781 cccgcgtcat cgacctggtg gctccgatcg gcaagggcca gcgtggcctg atcgtggccc
      841 cggccaaggc cggcaagacc atggtcatgc aggcgatcgc gaacgccatc acgaccaaca
      901 acccggagtg ccacctcatg gtcgtcctcg tggacgagcg ccccgaggag gtcaccgaca
      961 tgcagcgcgc cgtcaagggc gaggtcatct cctcgacctt cgaccgcccg gccgacgacc
     1021 acacgaccgt ggccgagctg gcgatcgagc gtgccaagcg tctggtcgag atgggtcacg
     1081 acgtcgtcgt gctgctcgac tcgatcacca agctgggtcg ggcctacaac ctgtcggccc
     1141 cggccagcgg ccggatcctc tccggtggtg tcgactccgc agcgctctac ccgccgaaga
     1201 agttcttcgg cgcggcccgc aacatcgagg acggcggctc gctcaccatc ctcgccaccg
     1261 cgctggtgga gaccggttcg cggatggacg aggtgatctt cgaggagttc aagggcaccg
     1321 gcaacatgga gctcaagctc gaccgtggcc tcgccaaccg gcgcatcttc ccggctgtcg
     1381 acgtgaacaa ctcgggcacc cgcaaggagg agatcctgct ctcctccgag gagctcaaga
     1441 tcatgtggaa gctgcgtcgg gtgctggccg cgctcgacca gcagcagggc atcgagctcc
     1501 tgatcgaccg gctcaagaag accaagagca acgtcgagtt cctcatgcag gtccagcaga
     1561 actcctcgct gaagccgcac gacgagaacg gctgacacca gccaccaccg gtcccgaggg
     1621 accggaccgg atggagccc
//
LOCUS       DASYFY010000105         3300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_480621, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000105 DASYFY010000000
VERSION     DASYFY010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480621"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VGN19_02005"
     CDS             <1..589
                     /locus_tag="VGN19_02005"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194688.1"
                     /translation="LALKGVSVRVEPGEIVAVVGPSGSGKSTLLACLAGIDEPAGGTV
                     HVAGQRVTHKPEAHRARIRAQFIGVLLQSRNLIGHLTVAQNVSLARTASPRRSTKDVL
                     DSVGLTRRRDALPHQLSGGELARAGLAVALANDPSVLLADEPTGELDGATEQQILSLL
                     HAHAAGGTAVLVLTHSTAVTSAADRTLYLTDGTLT"
     gene            586..1278
                     /locus_tag="VGN19_02010"
     CDS             586..1278
                     /locus_tag="VGN19_02010"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194689.1"
                     /translation="MTSTGQNPLVVCEQVSHTFGTGPQAIVAVHGTSCRILPGQRIAV
                     AGPSGSGKSTLLHLLAGLEPPTGGSVEWPGLDPSAAARVHQIGVIFQSPSLLPTLDVL
                     ENVSLPLVLQGRDADDADARAAHALELLGLAELADQLPEELSGGQAQRVAAARVLAQE
                     PLLVLADEPTGQLDQATGKLLLDALLDATIRLGAALVVATHDQAVIGRLEVRWAMHEG
                     RLETHDNAGAKA"
     gene            1275..>3300
                     /locus_tag="VGN19_02015"
     CDS             1275..>3300
                     /locus_tag="VGN19_02015"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7194690.1"
                     /translation="MSLIWLRGLLRRRGPRLAALAVGVAVSVALIAALGAFLSASKAT
                     MTQRAIGSVATDWQVEIQPGADVAATLSAVRHTTGVGTALPVPHAQASGLSAVTNGTT
                     QTTGSAVVLGLPPGYRTAFPGQLRPLSGAPSGVLLAQQTAANLHAQPGTAITIQLPGG
                     AAATVTVDGVVDLPQADTLFQHVGAPAGAQPSAPPDNVVLLPTQTFDRLIGARSGTAV
                     VTQIHVRRSAPLPSDPAAAYEQVTAAARHLEAQQSGAVRVGDNLAAALDAARSDAAYA
                     QVLFLFLGAPGALLAALLTSALAATGGERRRAEQALLRLRGLTSSAVLRLALVEAAVV
                     GLAGGLLGLGLGALASRLAFGPGSLVSASATASWFAIAFVAGLLVAAATVVLPAVRDL
                     RHSTVVSARLTVGRRGKPSWMRWGLDVVLLIGAAAVFWASGSNNYSLVLAPEGVATIS
                     VSYWAFLGPALLWVGGALLLWRLLTLLMVNGRPVLARTLAPLTGRLTRVATANVSRQH
                     RTIARSAVLLALALSFAASTAIFNATYQAQAEADAQLTNGADVTVTEPPSGTTSPQAA
                     QALARVPGVRHVEPLQHRFAYVGADLQDLYGVRPQSITGVTALQDAYFQGGTAKALMQ
                     RLAAAPDSVLVSAETVKDFQLAPGDTLRLRLVDGRTHRLITVPFHYAGIVK"
BASE COUNT          475 a         1276 c         1049 g          500 t
ORIGIN      
        1 gctcgcactc aaaggtgtct cggtcagggt cgaaccgggc gagatcgtcg ccgtggtcgg
       61 accctcgggg tcgggcaagt ccacgctgct cgcctgtctt gccggcatcg acgagcccgc
      121 cggtggaacc gttcacgtcg cagggcagcg cgtgacgcac aaacccgagg cgcaccgagc
      181 ccgcatcagg gcacagttca tcggcgtcct gctccagtcg cgaaacctga tcggacacct
      241 cacggtcgcc cagaacgtct ccctggcccg gacagcctca ccccggcgca gcaccaagga
      301 tgtcctggac tccgtgggtc tgacccggcg acgcgacgcg ctgccccacc agctatcggg
      361 gggagagctg gcccgcgcgg gtctggccgt ggccttggcc aacgacccgt cggtgttgct
      421 cgcggacgaa cccaccggcg agcttgacgg cgcaaccgaa caacagattc tcagcctgct
      481 gcacgcccac gccgccgggg gcaccgcagt gctcgtcctg acccacagca ccgcggtaac
      541 gtccgccgcc gaccgaacct tgtacctcac cgacgggacg ctcacatgac cagcacaggc
      601 cagaaccccc tggtggtctg cgaacaggtc tctcacacct ttggcaccgg cccacaggcc
      661 atcgtcgccg tgcacggcac cagctgccgc atcctgccgg gccagaggat cgccgtggcc
      721 ggtccctccg ggtccggcaa gtcgaccctg ctgcacctgc tcgccggact tgagccgccg
      781 acgggcggca gcgtcgaatg gcccgggctg gacccgtctg ccgcggcacg ggttcaccag
      841 atcggcgtca tcttccagtc cccaagcctg ctccccaccc tggacgtcct ggagaacgtg
      901 tccctccctc tggtcctgca gggccgcgac gccgatgacg ctgacgctcg cgccgcgcac
      961 gccctggagc ttcttggact cgccgagctc gcggaccagc taccggagga actctcgggt
     1021 gggcaggccc agcgcgtcgc ggccgcccgc gtcctggccc aagagcccct cctcgtgctc
     1081 gctgacgagc caacgggcca actggaccaa gccaccggca agctgcttct ggacgcactc
     1141 ttggatgcga ccatccgtct tggagctgcg ctggtggtgg ccactcacga ccaagccgtc
     1201 atcggccgcc tcgaggtccg atgggccatg cacgaaggtc gcctcgagac ccacgacaac
     1261 gcgggggcca aggcatgagc ctgatctggc tacgcggcct gctgcgcagg cgcgggcctc
     1321 gcttggctgc ccttgccgtc ggggtcgccg tctccgtggc gttgatagcc gctctggggg
     1381 cgttcttgtc cgcctccaag gcgaccatga cccagcgagc catcgggtcc gtggccaccg
     1441 actggcaggt cgagatccaa ccgggcgccg atgtcgcagc cacactgtcg gccgtcagac
     1501 acaccacggg cgtgggcacc gcccttccag tcccgcacgc gcaggcgtcg gggctctccg
     1561 ccgtcacgaa cggcacgacc cagaccaccg ggtccgccgt cgtgctgggg cttccaccgg
     1621 gataccgcac cgccttcccg ggccagctgc gcccactgag cggcgcaccc tcgggggtgc
     1681 tgctggccca acagacggcc gccaacctgc acgcccaacc gggcacggcc atcaccatcc
     1741 agctgcccgg tggggccgcc gcgacggtca cggtcgacgg tgtggtcgac ctgccgcagg
     1801 ccgacacgct gttccagcac gtcggcgcac cggccggtgc ccagcccagc gcaccaccag
     1861 acaacgtcgt cctcctgcca acccagacct tcgacaggct catcggcgcc cggtcgggca
     1921 ccgcggtcgt cacgcagatt cacgtgcgac gctccgcgcc gctgccaagt gacccggcgg
     1981 cggcgtacga gcaggtcacc gcggccgcgc gccacctcga agcgcagcag tcgggagccg
     2041 tccgcgtcgg ggacaacctg gcagcggctc tggacgctgc tcgcagcgac gcggcatacg
     2101 cccaggtcct cttcctgttc ttgggtgcgc cgggggccct gctggccgcg ctgctgacct
     2161 ccgcccttgc cgccaccggt ggggaacgtc gtcgcgccga gcaggcactc ctgcgccttc
     2221 gcgggttgac gagctcggcc gtgctgcggc tcgccttggt cgaggcagca gtcgttggac
     2281 tggctggcgg tctgcttgga ctcgggctgg gcgccctcgc cagtcgactg gccttcggtc
     2341 cgggaagcct ggtctcggcc tcagccaccg ccagctggtt cgcgatcgcc ttcgtcgccg
     2401 ggctcctggt ggcggcggcg acggtcgtgc tacccgccgt gcgtgacctg cgtcattcga
     2461 ccgtggtctc cgcccgcctc acggtcgggc gcaggggtaa gccctcctgg atgcgttggg
     2521 ggctcgacgt cgtcctgctg atcggcgccg ccgccgtctt ctgggcatcg gggagcaaca
     2581 actactccct tgtcctggcc cccgagggcg tcgccacgat ctccgtgtcg tactgggcct
     2641 tcctgggtcc ggctctcttg tgggtcggcg gggcgctgct cctgtggagg ctccttaccc
     2701 tcctcatggt caatggtcgc cccgttctgg cccggaccct cgcacccctg acgggccgcc
     2761 tcaccagggt cgcgaccgcc aacgtcagcc gccagcaccg caccatcgcc cggtcggccg
     2821 tgctcctggc cctggcactc tccttcgcgg catccacagc gatcttcaac gccacctacc
     2881 aggcccaggc cgaagccgac gcccagctca ccaacggggc cgacgtcacg gtcaccgagc
     2941 cgccatcagg caccaccagc ccacaggccg cgcaagcctt ggcccgcgtc ccaggcgtcc
     3001 gtcacgtgga gccgctacag caccggtttg catacgtggg cgccgacctg caggacctct
     3061 acggcgtccg gccccaaagc atcaccggcg tcaccgccct tcaggacgcc tacttccaag
     3121 gtggcaccgc gaaggcactg atgcagcgac tcgccgcagc cccagactcg gtgctcgtca
     3181 gtgccgagac ggtcaaggac ttccaactgg caccaggaga cacgctgcga ctgcgcctcg
     3241 tcgacggtcg aacccaccgg ctcatcaccg tcccgtttca ctacgccggg atcgtcaagg
//
LOCUS       DASYFY010000106         1606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_638341, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000106 DASYFY010000000
VERSION     DASYFY010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_638341"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1578
                     /locus_tag="VGN19_02020"
     CDS             <1..1578
                     /locus_tag="VGN19_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEV7194691.1"
                     /translation="GDAVAFTVIEDDLSSRDLTYGQLKARSEQAAAALARLGVEPGDG
                     VATLMGKSEELIVTLLGIWRLGAVHVPLFTAFGPPAIAARLLPSETKVVVCDAGQRAK
                     LEPSEDIPADASWTVVVAGGVFQGHGQDLLLEELLDAENPGHPAAARLIEDPLVHLFT
                     SGTTGTPKAVPVPVKALAAFGIYMEYGLDVREDDVFWNAADPGWAYGLYYGVLGPMVT
                     GRRNLLLHAGFDVALTWNVLEKFKVTNLAAAPTVYRALRSGESHAPAEGALSLRVCSS
                     AGEPLNPEVITWAQQRLGVPVRDHYGQTELGMAVVNGWHPDIVEDLKPGSMGRAMPGF
                     AAAVLEEGNDTPAAAGVQGRVAIDVPGSPLMWFTGYANDPARTAERFSADRRWYFSGD
                     VASLDEDGSFFFSSRDDDVIIMAGYRIGPFEVESVLVSHPDVAEAAVIGVPDELRGEV
                     LEAYVVLRDGAASGPELVAALKHHVKARYAAHAYPRSIHIVGALPKTPSGKVQRFVLR
                     QQRRTELAEHARHGTPA"
BASE COUNT          241 a          574 c          556 g          235 t
ORIGIN      
        1 ggggacgccg tcgccttcac cgtcatcgag gacgacctgt ccagccggga cctgacctac
       61 ggccagctca aggcccgttc ggagcaggct gccgccgcgt tggcgcgtct gggggtcgag
      121 ccgggtgacg gggtcgcgac cttgatgggt aagagcgagg agctcatcgt caccctgctg
      181 ggcatctggc gcctgggcgc tgtgcacgtg ccgctgttca ccgcgttcgg gccgccggcg
      241 atcgcggccc ggctgctgcc cagcgagacc aaggtcgtgg tctgcgacgc cgggcagcgg
      301 gccaagctgg aacccagtga ggacatcccg gccgacgcgt catggaccgt cgtcgtcgcc
      361 ggcggcgtat tccagggcca cggtcaggac cttctgctgg aggagctcct ggacgccgag
      421 aaccccgggc acccggctgc cgcgcgcctc atcgaagacc cgctggtgca cctgttcacc
      481 tccggaacca cgggcacccc caaggcggtg ccggtgccgg tcaaggcgct ggccgcgttc
      541 gggatctaca tggagtacgg cctggacgtg cgcgaggacg acgtgttctg gaacgcagcc
      601 gaccccggtt gggcgtacgg gctgtactac ggggtccttg gcccaatggt caccgggcga
      661 cgcaacctgc tgctgcacgc cgggttcgac gtggcgttga cctggaacgt gctggagaag
      721 ttcaaggtca ccaacctcgc cgcagcgccg accgtgtacc gagcccttcg ctccggggag
      781 agccacgccc ccgccgaggg cgcgctgtcg ctgcgggtgt gctccagtgc cggggagccc
      841 ctgaaccccg aggtcatcac ctgggcccag cagcggctcg gggtgcccgt gcgcgaccac
      901 tacgggcaga ctgagctcgg catggccgtc gtcaacggct ggcaccccga catcgtcgag
      961 gacctcaagc ccgggtcgat gggccgggcc atgcccggct tcgccgcagc cgtcctggag
     1021 gaaggcaacg acaccccagc ggctgccggc gtccagggca gggtcgcgat cgacgtgcca
     1081 ggtagccccc tgatgtggtt caccggctac gccaacgacc cagcgcgcac ggctgagcgg
     1141 ttcagcgcgg accggcgctg gtacttcagc ggcgacgtgg ccagcctgga cgaggacggc
     1201 tccttcttct tctcctcccg agacgacgac gtgatcatca tggccggtta ccgaatcggg
     1261 ccgttcgagg tcgagtcggt gctggtctcc cacccggacg tggccgaggc cgcggtcatc
     1321 ggggtgcccg acgagctgcg cggtgaggtg ctcgaggcgt acgtcgtcct gcgcgatggc
     1381 gctgccagtg gtccggagct ggtcgcggcg ctcaaacacc acgtcaaggc gcggtacgcc
     1441 gcgcacgcct acccgcgcag catccacatc gtcggcgccc tgcccaagac cccgagcggc
     1501 aaagtccaac gcttcgtcct gcgtcagcag cggcgcaccg aactggccga gcacgcacgc
     1561 cacggcaccc ctgcctaagt caataccccc cgcgacgccc ccatcc
//
LOCUS       DASYFY010000107         1817 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_638358, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000107 DASYFY010000000
VERSION     DASYFY010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_638358"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VGN19_02025"
     CDS             <1..438
                     /locus_tag="VGN19_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEV7194692.1"
                     /translation="ETVVVDGLEYREAMNAVGIAGGIAGNIIPDRCVVTVNYRYAPDK
                     SPEDALAVVHQLFAGYVVDLKDNAGGARPGLDRPAAKAFVEALGVEVVAKQGWTDVAR
                     FAAMGVPAVNFGPGDPNLAHHDEERCPIDQLESAHTALLRWLA"
     gene            449..1231
                     /locus_tag="VGN19_02030"
     CDS             449..1231
                     /locus_tag="VGN19_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEV7194693.1"
                     /translation="MSEQSQSGPATGRDYEYHTGPVTLRGSRVPGTTTDQRLLDSRGP
                     SDWLHTDPWRVMRIQSEFVEGFGALAELGPAVSVFGSARTKPGTPFYELGAEVAGKLV
                     AAGYAVITGGGPGAMEAANKGAREAGGASVGLGIELPFEQGLNEYVNLGVNFRYFFAR
                     KTMFVKYARGFIVLPGGFGTLDELFEAVTLVQTQKVTSFPIVLMGRDYWAGLFDWLRG
                     TVLDAGTVNARDIDLLHLTDDVDEAVRLIVQADDEITPKRPE"
     gene            1272..1535
                     /locus_tag="VGN19_02035"
     CDS             1272..1535
                     /locus_tag="VGN19_02035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194694.1"
                     /translation="MTISPLPSHGDVIVGRDVAGRTLRISGHPESGRVVLSIWQDTVC
                     RATLRLAPEDVPQFVEMLTRSAIEPSTADGRHAPHHLGTGTRG"
     gene            1584..>1817
                     /locus_tag="VGN19_02040"
     CDS             1584..>1817
                     /locus_tag="VGN19_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005270499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEV7194695.1"
                     /translation="MIWVLFIAVAILVVGAFAALIVGWVGYDPLAKATSTQGDPGLPA
                     DFHAEDLADLHFDTALRGYRMDQVDEVLDRLGER"
BASE COUNT          281 a          604 c          646 g          286 t
ORIGIN      
        1 gaaacggtgg tcgtggacgg cctggagtac cgagaggcca tgaacgccgt cggcatcgcc
       61 ggcggcatcg ccggcaacat catccccgat cgctgcgtgg tgaccgtcaa ctaccgctac
      121 gcccccgaca agtcgcccga ggacgcgctc gccgtcgtgc accagctgtt cgccggctat
      181 gtggtcgacc tcaaggacaa cgccggcggt gcccgtcccg gcttggaccg gccggcggcc
      241 aaggctttcg tcgaggccct cggcgtcgag gtcgtcgcca agcagggctg gaccgacgtg
      301 gcacgcttcg cggcgatggg ggtgcctgcg gtgaacttcg ggcctggtga ccccaatctc
      361 gcccaccacg acgaggaacg ttgcccgatc gaccagctcg agtcggcgca cactgcgctg
      421 ctgcgttggc tcgcgtaggt tggcgcgcgt gagcgagcag agccagagcg gcccggccac
      481 ggggcgcgac tacgagtacc acaccggccc ggtgacgttg cggggctcgc gggtcccggg
      541 gacgaccacg gaccagcggc tgttggacag ccgcggaccc agcgactggc tgcacaccga
      601 cccctggcgg gtcatgcgga tccagagcga gttcgtcgag ggtttcggcg cgttggccga
      661 gctgggtccg gcggtgagcg tgttcgggtc ggcgcggacc aagccaggca ccccgttcta
      721 cgagctgggc gccgaggtgg ccggcaagct ggtggcggcc gggtatgccg tgatcaccgg
      781 aggcggaccg ggagccatgg aggcggccaa caagggtgcc cgtgaggcgg gcggggcctc
      841 ggtcggactt ggcatcgagc tcccgttcga gcagggcctg aacgagtacg tgaacctcgg
      901 cgtgaacttc cgctacttct tcgcccgaaa gaccatgttc gtcaagtacg cgcgcgggtt
      961 catcgtgctg cccggcggtt tcggcaccct ggacgagctg ttcgaggcgg tcaccctggt
     1021 ccagacccag aaggtcacgt cctttccgat cgtcctgatg ggccgggact actgggctgg
     1081 gctgttcgac tggctgcgtg gcaccgtgct ggacgcggga accgtcaacg ctcgggacat
     1141 cgacctgctg cacctcaccg acgatgtcga cgaggccgtg cgcctcatcg tccaggctga
     1201 cgacgagatc actcccaaac ggcccgaatg agggatggac ggcgcgaccg tcttgcgagg
     1261 atcatgggga gatgaccatc tcgcccctgc cgagccacgg tgacgtcatc gtcggccggg
     1321 acgtggcggg gcgcaccctg aggatctcgg gccaccccga gagtggacgg gtggtcctgt
     1381 cgatctggca ggacacggtc tgtcgggcga cgctgcggct ggcgcccgag gacgtacccc
     1441 agttcgtcga gatgctgaca cgctcagcca tcgagccgtc gacggcagac gggcgccacg
     1501 caccccacca tctcggcacc ggcacccggg gttgaccagg gcctgagtag gtctgtcggg
     1561 cacttcgtgc aacgatcact cgcgtgatct gggtgctctt catcgccgtc gcgatactcg
     1621 tcgtgggcgc gttcgccgcg ctcatcgtcg gctgggtggg ctacgacccg ctcgccaagg
     1681 ccaccagcac ccagggcgat cccggactgc ctgcggactt ccacgccgag gacctggccg
     1741 acctgcactt cgacaccgca ctgcgtgggt atcggatgga ccaggtggac gaagtgctcg
     1801 accggctcgg tgagcgc
//
LOCUS       DASYFY010000108         1634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1846813, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000108 DASYFY010000000
VERSION     DASYFY010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1846813"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..755
                     /locus_tag="VGN19_02045"
     CDS             <1..755
                     /locus_tag="VGN19_02045"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7194696.1"
                     /translation="GSGKSLTARAVLGLLPSGAQTQGRVVVDGLDVLSCDRRALRDLR
                     ASTASMVFQDPRAGLNPVRRIGDFLTEATRASGHLTRAAAATRAMQLLDAVGLPDPAL
                     HLTQYPHQLSGGMLQRVMIAGALMGEPRLLLCDEPTTALDVTTQAEIVAVLRRLQREQ
                     GMGMLFITHDLDLAAAICDRIYVMYAGRVVEEAPATELFSAPRHPYTAGLLSSRPRLG
                     DRDCRLGSIPGSPPSLLDVAVRAHADNLRVVS"
     gene            752..1630
                     /locus_tag="VGN19_02050"
     CDS             752..1630
                     /locus_tag="VGN19_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020380565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194697.1"
                     /translation="MNTSPRLEVVDLHKSYRVRGGTVDAVAGVTFDLPAGQTLGIVGE
                     SGSGKSTVARMLVGLERPDAGQIVVCGRSAAGPSRGRTERIARARAIQIVFQDPYLSL
                     DPRLAVGAAIEATLRLHTELSPPDRRRRVIDLLVQVGLGEGVAGTLPRRLSGGERQRV
                     AIARALAVRPSVLILDEAVSALDVSVQAQVLNLLADIRRETDIALVFISHDLAVVRHV
                     CDQTLVMHRGQVVERGATRGLLDSPQHPYTQLLRDAVPRPGWCPEEVVRAKERLRDKL
                     ADGEPVPEKASRLSRI"
BASE COUNT          223 a          574 c          563 g          274 t
ORIGIN      
        1 cgggctcggg gaagtcgctg accgctcgag cagtcctggg gctcctgcca tccggcgccc
       61 agacgcaggg gcgtgtcgtt gtcgacggac tggacgtcct gagctgtgac cggcgggcct
      121 tgcgcgactt gcgggcctcg acagcgtcga tggtcttcca ggacccgcgc gccggactga
      181 accccgtgcg tcgaatcggc gacttcctga cggaggccac ccgcgccagc ggccatctca
      241 cccgggcagc cgccgccacg cgggcgatgc agctcctcga tgccgtggga ctgcccgacc
      301 cggccctgca cctgactcag tacccccacc agctgtcagg aggcatgctc cagcgggtca
      361 tgatcgccgg tgccttgatg ggcgaaccgc ggttgctgct ctgcgacgag ccgaccactg
      421 ccctggacgt gaccacccaa gcggagatcg tcgcggtgct gcggcggctc cagcgtgagc
      481 aggggatggg gatgctgttc atcacccacg acctcgacct cgcggccgca atctgcgacc
      541 ggatctatgt gatgtatgcg ggacgcgtcg tggaggaggc gccggcgacg gagctcttct
      601 cggctccccg gcatccctac accgcagggc tcctgtcctc gaggcctcgg ctgggcgacc
      661 gggactgccg cctcggctcc atccctggtt cgccgccgag cctcctcgac gttgctgttc
      721 gggcgcacgc cgacaacctg agggtggtct cgtgaacacg tcaccgcggc tcgaggtcgt
      781 cgatctccac aagagctacc gcgtgcgtgg agggaccgtt gatgcggtgg ccggcgtcac
      841 cttcgatctg ccggccgggc agaccctagg cattgtcggc gagtcggggt ccggcaagtc
      901 gaccgtggct cgcatgctgg tcggactcga gcggccggat gcggggcaga tcgtcgtgtg
      961 cggtcgctca gcggctgggc cgtcgcgggg ccgcaccgag cggatcgcgc gcgcgcgagc
     1021 gatccagatc gtcttccagg acccctacct ctccctcgat ccacggttgg ccgtcggcgc
     1081 cgccatcgag gcgacgctgc gcctgcacac cgagctttcg ccccccgacc ggcggcggcg
     1141 ggtcatcgac ctgttggtcc aggtgggtct tggcgaaggc gttgcaggga cgctcccccg
     1201 ccgcctttcc ggtggagagc ggcaacgcgt agcgatcgcc cgtgcgctgg ccgtgcggcc
     1261 ttccgtgctc atcctcgacg aggcagtctc tgcactcgac gtctcggtgc aggcgcaggt
     1321 gctcaacctc ctggccgaca tccgccgcga gaccgacatc gctctggtct tcatcagtca
     1381 tgacctcgcg gtcgtgcggc acgtgtgcga ccagacgctc gtgatgcacc gcggccaggt
     1441 cgtggagcgc ggtgctactc gcggactcct cgactcgccc cagcacccgt acacgcagct
     1501 cctgcgggat gcggtccctc ggcccgggtg gtgtccagag gaggtcgtca gggccaagga
     1561 gcgtctccgg gacaagttgg cggacggtga gcccgtacca gagaaggctt cacgtctgtc
     1621 tcgcatctga gacg
//
LOCUS       DASYFY010000109         2757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1374551, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000109 DASYFY010000000
VERSION     DASYFY010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1374551"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /gene="uraH"
                     /locus_tag="VGN19_02055"
     CDS             <1..220
                     /gene="uraH"
                     /locus_tag="VGN19_02055"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005051657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEV7194698.1"
                     /translation="TDGDGRVGSIGPERLAAGEYRLRFASGGYFAAQGVTGFYPEVVV
                     VFTIADAAEHYHVPVLLNPFGYSTYRGT"
     gene            364..1188
                     /locus_tag="VGN19_02060"
     CDS             364..1188
                     /locus_tag="VGN19_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018172571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEV7194699.1"
                     /translation="MTDHGLRYDVNCSILFTELPLLERPAAAKAAGFDAVEFWWPWPE
                     QPLPADSQVDAFVRAVRDAGVQLVGLNFFAGDLAGPDCGVLSIPARDRQFRDNVDVAV
                     GIGEQLGAQAFNALFGNRVEGVAPEEQDALGRESIALAAKAADRIGATVLVEAVSGPK
                     PYPLRLAADAVAVVDDVRAMGSANVGFLLDLYHLAANGDDLDVAIARYADRTSHVQIA
                     DAPGRGEPGTGHLDLDRHLRDLARTGYAGWVGLEYKPTTVTTPESFAWLPTPLRSR"
     gene            1212..2144
                     /locus_tag="VGN19_02065"
     CDS             1212..2144
                     /locus_tag="VGN19_02065"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017199938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008679 - 2-hydroxy-3-oxopropionate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0019580 - galactarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HEV7194700.1"
                     /translation="MTSTEQHPRRTQMSTIAFIGLGIMGSPMALHLANAGHDVVGYNL
                     HPDKTAPLVEAGGRAATSIAEAVTNADIVAVMVPDSPDVQQVLLGEDGVFANAKEGTL
                     VIDFSSIRPDVTVELAKEATRRGFRLLDAPVSGGEAGARSAALSIMVGGAVTDFDAAK
                     DVFDAVGRTVVHVGGNGAGQTVKAANQLIVAANIQALAEAVVFLDAYGVDLEAALDVL
                     GGGLAGSKVLDQKRGNLVNHDFTPGFRIDLHHKDMGIVTAAAREAGVVVPLGALVAQL
                     MASARANGDGGLDHSALLRGVERLSGRPPTPESR"
     gene            2210..>2757
                     /locus_tag="VGN19_02070"
     CDS             2210..>2757
                     /locus_tag="VGN19_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013602563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HEV7194701.1"
                     /translation="MARMTAAQAAVEILKREGVTQLFGLPGAAINPFYKAMKTNGGLT
                     HILARHVEGASHMAEGYTRAKAGNIGVCVGTSGPAGTDMITGLYSASADSIPILCITG
                     QAPVAKLHKEDFQAVDIASIAKPLTKMAVTVLEPAQVPGTFQQAFHLMRSGRPGPVLI
                     DLPIDVQLAEIEFDIETYEPLPV"
BASE COUNT          453 a         1008 c          897 g          399 t
ORIGIN      
        1 caccgatggc gacggacgcg tcgggtcgat cggccccgaa cggctggctg cgggcgagta
       61 ccggctgcgg ttcgcctcgg gaggctactt cgccgcacag ggcgtgacgg gcttctatcc
      121 agaggtggtg gtcgtcttca cgatcgcgga tgccgccgag cactaccacg tacccgtgct
      181 gctcaacccc ttcggctaca gcacctaccg cggcacctga cctgccgctc cgcgtgaccc
      241 ctgcgtgacc ctgcgtgacc ctgcgcgacc tctgacagca gacgttgcgt gactcgggca
      301 gcgtgcagct gccctcattc cgccgaccct gcgtgcaggg tctcaagaga cgaggtgatc
      361 cccatgacgg accacggact gcgctacgac gtgaactgct cgatcctctt cacggagctg
      421 ccgttgctcg agcggcccgc ggcggcgaag gcagccgggt tcgacgcggt cgagttctgg
      481 tggccctggc cggagcagcc tttgcccgcc gactcccagg tcgacgcgtt cgtgcgcgcc
      541 gtccgtgacg ccggagtgca gctggtcggg ctcaacttct ttgccggaga ccttgccgga
      601 cccgactgcg gagtcctgtc gatcccggcc agggaccggc agttccgcga caacgtggac
      661 gtggcggtcg gcatcggcga acagctgggc gcccaggcct tcaacgcgct gttcggcaac
      721 cgggtcgagg gggtcgcccc cgaggagcag gacgccctgg gccgcgagtc gatcgcactc
      781 gccgccaagg cggccgaccg catcggcgcc accgtcctcg tcgaggcggt gagcggaccc
      841 aagccctacc cgctacgcct ggcggccgac gcggtggcgg tcgtcgacga cgtgcgggcc
      901 atgggcagcg ccaacgtcgg cttcctgttg gacctctacc acctggcggc caacggcgac
      961 gacctcgacg ttgccattgc caggtatgcc gaccgcacca gccatgtgca gatcgccgac
     1021 gcccccggcc gcggggagcc aggcaccggc cacctcgacc tcgaccgtca cctccgtgat
     1081 ctcgcccgga ccgggtatgc cggctgggtc ggcctcgagt acaagcccac cacggtcacc
     1141 acccccgaaa gcttcgcctg gctccccacc cccctccgtt cgaggtagac gcgccgagga
     1201 atccacgcgc tattacctca accgagcagc atccaaggag aacgcagatg agcaccatcg
     1261 ccttcatcgg actcggcatc atgggcagcc ccatggccct ccacctcgcg aacgccggcc
     1321 acgacgtcgt gggctacaac ctgcaccccg acaagacggc cccactcgtg gaggcaggag
     1381 gtcgcgccgc gacgtcgatc gccgaggcgg tcacgaacgc cgacatcgtc gcggtcatgg
     1441 ttcctgacag cccggacgtc cagcaggtcc tgctcggcga ggacggtgtc ttcgccaacg
     1501 ccaaagaagg cactctcgtc atcgacttct cgagcatccg ccctgacgtg accgtcgagc
     1561 tggcgaagga ggcgacccgg cgagggttcc ggctgctcga tgctccggtc tccggaggcg
     1621 aggccggtgc caggagcgcc gccctgtcga tcatggtcgg cggcgcggtg acagacttcg
     1681 acgcggccaa ggacgtcttc gatgcggtcg gcaggaccgt cgtccacgtc ggcggcaacg
     1741 gcgccggcca gaccgtgaag gccgcgaacc agctcatcgt ggcggcgaac atccaggccc
     1801 tcgccgaggc ggtcgtgttc ctcgacgcct atggagtcga cctcgaggcc gcgctcgacg
     1861 tactcggcgg cggcctcgcg ggatccaagg tgctggacca gaagcggggc aacctggtca
     1921 accacgactt cacgccggga tttcggatcg acctgcacca caaggacatg ggcatcgtca
     1981 ccgccgctgc ccgagaggcc ggggtcgtcg tgcccctggg cgcactcgtc gcgcagctca
     2041 tggcctcggc ccgcgcgaac ggcgacggcg gactcgacca ctcggccctg ctccgcggag
     2101 tcgagcgcct ttccggccgt ccccccaccc ctgagtcgag gtgaacacgc cgcgaatccg
     2161 cggcgcgtcc acctcgaacc gaaacgacag attgatcagg agcaccacca tggcacgcat
     2221 gaccgcggcc caagcggccg tcgagatcct gaagagggaa ggggtgaccc agctcttcgg
     2281 cctgcccggg gctgcgatca accccttcta caaggcgatg aagaccaacg ggggcctcac
     2341 ccacatcctc gcgcgccacg tcgagggtgc ctcgcacatg gccgagggct acacccgcgc
     2401 caaggcgggc aacatcggcg tctgcgtcgg gaccagtgga ccggccggca ccgacatgat
     2461 cacgggcctc tactcggcga gcgccgactc gatccccatc ctgtgcatca cgggccaggc
     2521 gccggtggcc aagctgcaca aggaggactt ccaggcggtt gacatcgcct cgatcgccaa
     2581 gccgctcacc aagatggcgg tcacggtgct ggagcccgcg caggtgccag gcacgttcca
     2641 gcaggccttc cacctcatgc gctcagggcg gccggggcca gtcctcatcg acctgccgat
     2701 cgacgtccag ctggccgaga tcgagttcga catcgagacg tacgagcccc tcccggt
//
LOCUS       DASYFY010000110         4730 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1059675, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000110 DASYFY010000000
VERSION     DASYFY010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059675"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1147)
                     /locus_tag="VGN19_02075"
     CDS             complement(<1..1147)
                     /locus_tag="VGN19_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC/CoxI family protein"
                     /protein_id="HEV7194702.1"
                     /translation="MREVLPELLRWWRAGASVGVGTVVATWRSAPRQAGAAMLVGPGG
                     QVVGSVSGGCVEGAVYELAQSVVAGDGPVLQRYGVSDDDAYAVGLTCGGILDVFVERI
                     SQETFPELEQVAADLDAGRSVAVATVVEHPDPAWLGRRIVVRPEADESRPSGSLGSDR
                     ADDAVTDDARGLLASGRTDTLTYGPDGERRGEGMRVFVSSFAPRPRMLVFGAIDFAAA
                     VAQMGTFLGYRVTVCDARPVFATASRFPSSDEVVVQWPHRYLETERDAGRLDARTVIC
                     VLTHDPKFDVPVLEIALRLPEVAYVGAMGSRRTHEDRLRRLEAAGVTRDELARLCSPI
                     GLDLGARTPQETAVSIAAEIVALQWGGRGDRLAQLDGPIHHHGHVAAP"
     gene            complement(1140..2288)
                     /locus_tag="VGN19_02080"
     CDS             complement(1140..2288)
                     /locus_tag="VGN19_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEV7194703.1"
                     /translation="MSVTMGAPMLSPERRTTDTRHAPDEVLLAFARALRAAGVAVTAD
                     RERTYLEAVACVGLDDEAGTYWAGRATMCASPADLERYDQVYAAWFGLDRAGTQPRRD
                     PTRSVPQAPLESHGDAQEQEQPDEARAEASAVEVLRHRDVASLSPSERARLVALFAEL
                     RPRAPRRRAHRHTPAARGSIDARQTLRTQLRHLGEPGPISWRRRGTRARRVVFLVDVS
                     GSMSGYVDALLRLAHAYSACGHPVEVFTLGTRLTHVTRPLHQRDPERALVACGAAVPD
                     WSGGTRLAEGLHAFLDRWGRRGMARGAVVVLFSDGWEREAPEALGEQMRQLHRLAHRV
                     VWVNPHRGKAGYEPVQRGILAALPHIDDFVAGHSMATFEEVLEVVARA"
     gene            complement(2285..3175)
                     /locus_tag="VGN19_02085"
     CDS             complement(2285..3175)
                     /locus_tag="VGN19_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEV7194704.1"
                     /translation="MEPREAFESAQDLQRGLSSTGYLADDALGTVAWLALRLQRPLLL
                     EGEPGTGKTALAEALAESLDLPLIRLQCYEGIDATQALYDWDFPRQILHLRAVEAVAR
                     DATDVAEVEQQLFDQRFLLSRPVLRALRESPAVLLVDEIDRADDEFEAFLLEVLSTWQ
                     VTIPELGTVSAATPPVVVLTSNRTRELHDALKRRCLYHWIDHPSLSRELEIVRTRAPE
                     VSSALAEQVVGAVQRLRQDRDLIKPPGVAETLDWARALQELGASELDLDAASATLGVA
                     VKYREDTERVRAALDRILSR"
     gene            complement(3233..3850)
                     /locus_tag="VGN19_02090"
     CDS             complement(3233..3850)
                     /locus_tag="VGN19_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009074291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEV7194705.1"
                     /translation="MAEGVPATATGATTAGLVLAAGAGVRMGGPKALVAHPQGGALLT
                     HALAVLREAGCEPVVAVLGAEAASASMLTRAADVVVVAEDWATGQAASLRAGLEAVQS
                     TGAQAVVVLLVDLPDVTAQVVVRVVAAAGGTPQALARAAYLGMPGHPVVLGRDHWGGV
                     LASATGDQGARDYLATHAHLSIECGDLATGGDVDTPADLAPPSRT"
     gene            complement(3855..>4730)
                     /locus_tag="VGN19_02095"
     CDS             complement(3855..>4730)
                     /locus_tag="VGN19_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEV7194706.1"
                     /translation="FTTVGDIFSSVTNPDRKKAFDIRTVMAALADQDHPTLERWAGMA
                     DAETAVVQDAHIGGFPVCLVGIESKTVARRGFPPTDGPDTYTAGTLFPRSSTKVARAI
                     NAASGNRPVVVLANLSGFDGSPESMRSLQLEYGAEIGRAIVNFEGPIVFCVISRYHGG
                     AFVVFSKALNPRMTVLAVEGSFASVIGGAPAAAVVFSRDVDARTAADPRVRELESRLA
                     EATGGARAALATELADLRTTVRAEKLGEVASEFDSVHSIHRAVSVGSVDEVIAASDLR
                     PKIIASIAGVGTGVG"
BASE COUNT          703 a         1728 c         1680 g          619 t
ORIGIN      
        1 tcggtgcggc cacgtggccg tggtggtgga tggggccgtc cagctgggcg agtcggtccc
       61 ctcggccgcc ccactgcagg gcgacgatct cggcggcgat gctgacggct gtctcctgcg
      121 gcgtgcgggc gccgaggtcc aggccgatcg ggctgcacag ccgcgccagc tcgtcacggg
      181 tcaccccggc agcctcgagc cggcgcaggc ggtcctcatg cgtgcgtcgg gaccccatcg
      241 cgccgacata ggcgacctcg ggcagccgca gggcgatctc gaggaccgga acgtcgaact
      301 tggggtcgtg ggtgagcacg cagatcaccg tccgggcgtc gagccgacct gcgtcgcgct
      361 cggtctcgag atagcggtgc ggccactgga cgacgacctc gtcgctggac gggaaacggc
      421 tcgctgtcgc gaagaccggg cgcgcgtcac acaccgtcac gcggtacccc aggaaggtcc
      481 ccatctgcgc cactgcggcc gcgaagtcga tcgccccgaa gaccagcatc cgcgggcgcg
      541 gcgcgaacga ggacacgaac acacgcatac cttcgccgcg tcgctcaccg tcgggcccat
      601 aggtgagggt gtcggtgcga cccgaggcga gcaggccccg cgcgtcgtcg gtcaccgcgt
      661 cgtcggcacg gtcgctgccc agcgaaccgg acggtcggga ctcgtcggcc tctggccgga
      721 ccacgatccg gcggccgagc caggccgggt ctgggtgctc cacgaccgtg gccaccgcga
      781 ccgagcgccc cgcgtcgagg tcggccgcga cctgctcgag ctcggggaag gtctcctggc
      841 tgatccgctc gacgaacaca tcgaggatgc cgccacaggt cagcccgacg gcatacgcgt
      901 cgtcatcgct gacgccgtag cgctgcagga cggggccgtc tccggccacg acgctctgag
      961 ccagctcgta caccgcgccc tcgacgcagc cgccgctgac cgaccccacc acctggccac
     1021 ctgggccgac gagcatcgcc gcaccggcct gccgcggcgc cgagcgccag gtggccacca
     1081 cggtgccgac gccgacgctg gcaccggcgc gccaccagcg cagcagctcg ggcaacacct
     1141 cacgcacggg caaccacctc gagaacctcc tcgaacgtcg ccatggaatg acctgcgacg
     1201 aagtcgtcga tgtgcggcag ggcggcgagg atgccgcgtt gcaccggctc gtatccggcc
     1261 ttgccacggt gggggttcac ccagacgacg cggtgcgcga gccggtggag ctggcgcatc
     1321 tgttcgccga gcgcctccgg ggcctcccgc tcccacccgt cgctgaacag cacgacgaca
     1381 gctccgcgcg ccatcccgcg gcgcccccag cggtcgagga aggcatgcag cccctcggcg
     1441 agccgggtgc cccctgacca gtcgggcacg gccgcgccac aggcgacgag agcgcgttct
     1501 gggtcgcgct ggtgcaacgg tcgcgtgacg tgggtgagcc gcgtcccgag ggtgaacacc
     1561 tcgaccgggt gaccgcaggc cgagtaggcg tgcgccaggc gcagcagggc gtccacgtag
     1621 ccgctcatcg agccggatac gtcgaccagg aagaccaccc gtcgcgcccg agttcccctg
     1681 cgccgccagg agatcggtcc aggctccccc aaatgcctca gctgcgtgcg cagagtctgg
     1741 cgggcgtcga tggagccccg ggcggccggc gtatgccggt gtgcgcggcg acgaggggcc
     1801 cgggggcgga gctcggcgaa cagtgccacc agccgggctc gctcggaggg gctgagcgag
     1861 gccacatccc gatgccgcag cacctcgacc gcgctggctt cggcgcgtgc ctcgtcgggc
     1921 tgctcctgtt cctgggcatc accgtggctc tccagcgggg cctgaggcac ggagcgggtg
     1981 gggtctcgcc gcggctgggt ccccgcgcgg tccagcccga accacgccgc atacacctgg
     2041 tcgtaacgct cgagatcggc cggtgaggca cacatcgtcg cgcgcccagc ccagtaggtt
     2101 ccggcctcgt cgtccaaccc gacgcaggcc accgcctcca gataggtccg ctcacggtca
     2161 gcggtcaccg caactccggc ggcccgcaag gcccgggcga acgcgagcag cacctcgtcg
     2221 ggggcgtgcc gcgtatcggt ggtccgccgc tcggggctca gcatcggggc acccatggtg
     2281 acgctcatcg agacaggatc ctgtcgaggg cggcccggac gcgctcggtg tcctcgcggt
     2341 acttcacggc cacgcccaag gtcgccgagg ccgcgtcgag gtcgagctcg gaggcgccga
     2401 gctcctgcag ggcgcgcgcc cagtccaaag tctcggccac tccaggcggt ttgatcaggt
     2461 cacggtcctg ccggagccgc tgcacggccc cgaccacctg ctcggcgagc gcgctcgaga
     2521 cctccggcgc acgggtgcga acgatctcga gctcgcggct caggctgggg tggtcgatcc
     2581 agtggtagag gcagcgtcgt ttcagggcgt cgtgcagctc tcgggtgcgg ttggaggtca
     2641 gcaccacgac cggcggggtg gcggcactga ccgtgcccag ctcgggaatg gtcacctgcc
     2701 aggtcgagag cacctcgagc aggaacgctt cgaactcgtc gtcggcgcgg tcgatctcgt
     2761 cgaccagcag cacggccggt gactcgcgca gcgctcgcag cacgggtcgc gagagcagga
     2821 agcgttggtc gaacagctgc tgctcgacct ccgcgacgtc agtggcatcg cgggcgaccg
     2881 cctccacggc ccgcaggtgc aggatctgcc gggggaagtc ccagtcgtac agggcctggg
     2941 tggcgtcgat gccctcgtag cactgcaacc ggatcagcgg caggtcgagc gactccgcca
     3001 gggcctcggc cagcgcggtc ttcccggtgc ccggctcacc ctcgagaagc agcgggcgtt
     3061 gcagtcgcag ggcgagccag gcgacagtgc cgagggcgtc gtccgcgagg tagccggtcg
     3121 acgacagccc ccgctgcagg tcttgggcgg actcaaacgc ctcacgcggc tccatggccc
     3181 aagcatcacc caccactcgt ccgcggggaa gggcaagggg ggtgggtccg ccctacgtcc
     3241 ttgatggtgg ggcgagatca gcgggcgtgt cgacgtcgcc gcccgtggcc aaatcgccgc
     3301 actcgatgct caggtgcgcg tgggtggcga ggtagtccct cgcaccctgg tcgccggtcg
     3361 ccgacgcgag cacgccgccc cagtgatccc gtccgaggac gacggggtgc ccaggcatgc
     3421 cgaggtatgc cgcgcgtgcc agcgcctgag gggtcccacc cgccgcggcc accactcgca
     3481 ccaccacctg ggcggtcacg tcgggaaggt ccaccagcag gacgacgacg gcctgcgcac
     3541 cggtgctctg caccgcctcg agaccggccc gcaaggaggc cgcctgaccg gtagcccagt
     3601 cctcggccac cacgacgacg tcagcggccc gggtcagcat cgaagcactc gctgcctcgg
     3661 cgccgaggac agccaccacc ggctcacagc ccgcttcccg caggacggcg agggcatggg
     3721 tgagcagggc cccgccctgc ggatgcgcca ccagtgcctt gggtccaccc atgcgcactc
     3781 ctgcgccggc ggccaggacc agccctgcgg tcgtcgcgcc tgtcgcggtc gccggcacgc
     3841 cctcggccat gtgctcagcc caccccggtc ccgacgcccg caatggaagc gatgatcttg
     3901 ggccgcaggt cgctggcggc gatcacctcg tcgaccgacc ccacgctgac cgcacggtgg
     3961 atgctgtgca cgctgtcgaa ctccgacgcc acctcgccga gcttctcggc gcgaacggtc
     4021 gtgcgcaggt cggcgagctc agtcgccagg gcggcccggg cgccccccgt ggcctcggcc
     4081 agccgggact cgagctccct gactcgcggg tcggcggcgg tccgcgcatc gacgtcccgg
     4141 gagaacacca cagcggccgc gggggcgcca ccgatgaccg acgcgaacga cccctcgacg
     4201 gccaggacgg tcatccgcgg gttgagcgcc ttggagaaga ccacgaacgc accgccgtgg
     4261 taccggctga tgacgcagaa gacgatcggt ccctcgaagt tgacgatggc ccgaccgatc
     4321 tcggcgccgt actccagctg caggctgcgc atcgactccg gcgacccgtc gaacccggac
     4381 aggttggcga ggacgaccac gggacggttg ccgctggcgg cgttgatggc ccgggcgacc
     4441 ttggtcgacg agcgcgggaa cagggtgcct gccgtgtacg tgtctggacc gtcagtgggc
     4501 gggaacccgc ggcgcgccac ggtcttggac tcgatcccca ccaggcagac cgggaaacca
     4561 ccgatgtggg cgtcctggac gaccgcggtc tcggcatccg ccatccccgc ccaccgctcc
     4621 agcgtcgggt ggtcctggtc ggccaaggcc gccatgacgg tgcggatgtc gaaggccttc
     4681 ttccggtcag ggttggtgac cgacgagaag atgtcgccga cggtggtgaa
//
LOCUS       DASYFY010000111         1550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_8446, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000111 DASYFY010000000
VERSION     DASYFY010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8446"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VGN19_02100"
     CDS             complement(<1..273)
                     /locus_tag="VGN19_02100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145660.1"
                     /note="metalloprotease; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HEV7194707.1"
                     /translation="MHNHLNGLKTAALLAAIFALLLAIGGGIAGYTGRSSSIWIFALI
                     GVGTTAYGYWNSDKLAIRAMHAYPVSEAQAPAMYRIVRELSTAAGQP"
     gene            complement(352..717)
                     /locus_tag="VGN19_02105"
                     /pseudo
     CDS             complement(352..717)
                     /locus_tag="VGN19_02105"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
     gene            complement(728..>1550)
                     /locus_tag="VGN19_02110"
     CDS             complement(728..>1550)
                     /locus_tag="VGN19_02110"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEV7194708.1"
                     /translation="GGPAVLVSLVLAATSGAAGVAAAHDLGSWLVCLELATLPVIALV
                     ALRGTTAAGRGALALLTTSLVSFAMVALGAALWLTATGQAVFASGAAHAALADPHRRA
                     VLLLGVLFLVAGLAFKLSLAPFHAWTPQAYAGATDPVAAFLAGTSKVAALAALLIVVR
                     PLAVAGGPVLVAVGVLAAVSMTVGNVLALVQDDPIRLLAWSTVAQAGWVVLPLSVMQP
                     ASASASGGYLLAYLVATLVAFTVVHLVVSSPTLSSPTLSSPTLSSPTMAGTPDPT"
BASE COUNT          294 a          543 c          550 g          163 t
ORIGIN      
        1 gggctgtcca gcagcggtcg agagctctcg gacgatgcgg tacatggccg gggcctgcgc
       61 ctcactcacc ggataggcat gcatggccct gatggcgagc ttgtcgctgt tccagtagcc
      121 gtaggcggtc gtgccgacac cgatgagcgc gaagatccag atggacgagc tccgccccgt
      181 gtagccggcg atccctccgc cgatggccag aagcagcgcg aagatcgcgg cgaggagggc
      241 agcggtcttg agcccgttga gatggttgtg catgtctggc tcaacgctcc ctgctgggtc
      301 ggcgttcccg ctcagccgag cagctcgagg ctcagccgag cagctcgagg ctcaaccgag
      361 cagcccgagc aggagctgcg gcatgacgct ggtggcaatc agggccactg cggacagggc
      421 gagggccacg agtccagcgc gcgggaggcg tcccaaccac ggagcagccg caccgtcctc
      481 gggatcccgc agcagcaccg caaaccagcg taggtacacc gccacgccca gcactgcgtt
      541 ggccaccgcc acgagtgcca gaacccattg gccaccgccc accacgggtc gcagcgcgac
      601 caccttggcg acgagtccca ccacgcccgg cggcagcccg gcgagcgaga gcaaggcgag
      661 tcccagcgcg cccccgagca ctgggtggga tcgcagcagc ccggtgtatg ccgcgagcga
      721 gcgccgatca ggttgggtcc ggggtgccgg ccatcgttgg cgaggacagc gtcggcgagg
      781 acagtgttgg cgaggacagt gttggcgagg acaccacgag gtggacgacg gtgaacgcga
      841 cgagggtcgc gacgagatac gccaacaggt agccccccga ggccgacgcg gaggctggct
      901 gcatcaccga cagtggcagg acgacccagc cggcctgcgc caccgtcgac caggccagca
      961 gccggatcgg gtcgtcctgc acgagtgcca ggacgttgcc gacggtcatc gacaccgctg
     1021 caagcacccc caccgcgacc agcacgggac cgcctgccac ggcgagggga cgcaccacga
     1081 tgagcagcgc ggccagggcc gcgaccttgg aggtcccggc aaggaacgcg gccacggggt
     1141 cggtggcccc ggcatacgcc tggggtgtcc acgcgtggaa cggcgccaag gagagcttga
     1201 aggccaaccc ggccacgagg aacagcacgc cgagcaggag caccgcccgg cgatgcggat
     1261 cggcaagggc ggcgtgggcg gcgcccgagg cgaagaccgc ctgccccgta gcagtcagcc
     1321 acagggctgc ccccagcgcg accatggcaa aggacaccaa cgacgtcgtg agcagggcca
     1381 acgctccccg cccggccgcg gtcgtgccac gtagtgcgac gagggcgatg accggcaacg
     1441 tagccagctc caggcagacc agccacgagc ccaggtcgtg agctgcagcc acaccagccg
     1501 cacccgacgt cgcggccagc accagactga ccaggaccgc cggaccaccg
//
LOCUS       DASYFY010000112         5327 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1059697, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000112 DASYFY010000000
VERSION     DASYFY010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5327
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059697"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..443
                     /locus_tag="VGN19_02115"
     CDS             <1..443
                     /locus_tag="VGN19_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEV7194709.1"
                     /translation="GSADEDPGDDEALPAMKELFLASEWAHRTPAEIELALETVIDGI
                     AVRGRIDAVFPRPGGGYTIVDWRTGSKPSGEVARTRALQLAAYRVAFARLRGLDPDEV
                     DGAFYYAGTGETAWPDLPDETALAELLGAVPPVDVPAAASARGG"
     gene            complement(424..1734)
                     /locus_tag="VGN19_02120"
     CDS             complement(424..1734)
                     /locus_tag="VGN19_02120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEV7194710.1"
                     /translation="MDRSPLFLAALASAAVPGLDPASVEAVPGVPDDHYDLAFVQDTQ
                     HRRWVVRVPRSQAAAAEMESTFGLLGLLSRRLPFGVPTPRGFAPLKEGGRAAVYPYLP
                     GASIDFAALPAGPGLAAELGRAIAALHNADHALFDEAGLPAYDADTYRTRRLGELDRA
                     AATGHVPTGLLGRWEKALEDVRLWRFAPTPTHGDLTGDQVLVVFEDEEDATTGTVKAV
                     TGWEDAKVADPADDFFALATQAPPLALETVMEAYAHARSERPDPHLLRRARLSSEMRT
                     VVALLAAVAHGDRMQVERHASALRRLDERLHLEEESESDYSRPAVAPARRKGPLLVPP
                     SVLDEEDSIDDDDVDAMFAKTAAETDEPTEEHGVGPGVEPVDAPSSASNTHTPSESES
                     ESESEPEPESEPEPESESESEPEPHFGGHDPGPEFEPGFTHPER"
     gene            1840..2784
                     /gene="nudC"
                     /locus_tag="VGN19_02125"
     CDS             1840..2784
                     /gene="nudC"
                     /locus_tag="VGN19_02125"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000210 - NAD+ diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HEV7194711.1"
                     /translation="MGRPVETLPNLALAQPGLARHADRRLEPNLVPTLLADPSTRVVD
                     LHRDRVELTEGPNGPALTQRSPRPDDHERLVVFLGQDDGGAGDDGDTAYLAVVEPDAE
                     PTDHPEWRTLRQCGADLADRDATLFATALALANWHATHSHCPRCGAATEPSQGGWLRV
                     CPRDDSQHYPRTDVAVIMSVVDEQDRLLLARGADWGEGRFSVLAGFLEPGESLAAAVT
                     REVYEEVGIVVRDVEYLGDQPWPFPNSLMVGFTARADASELHLQDAEIAEARWFTREE
                     YREVLASGRVSRSTRLSIARRLIERWLGHGLDEQPAPV"
     gene            complement(2800..3069)
                     /locus_tag="VGN19_02130"
     CDS             complement(2800..3069)
                     /locus_tag="VGN19_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020016326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mycoredoxin"
                     /protein_id="HEV7194712.1"
                     /translation="MATSATKAPAPGSVTMFTTSWCGYCNRLKAQMGREGIPFTEVNI
                     EDEPDAVQFVMEVNGGNQTVPTLLFPDGSAATNPSLNEVKKRLAA"
     gene            3173..3619
                     /locus_tag="VGN19_02135"
     CDS             3173..3619
                     /locus_tag="VGN19_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003882224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEV7194713.1"
                     /translation="MPTPPAPVVDPALLALAQGRNLGTLAAVKKNGRPQLSMVNFALD
                     PEGSTVRVSVVDGRAKVANLRRDPRASLLVTSGDGWSYAVLEGDAQFSPVASATDDAT
                     VEELVELYRTIRGEEHPDWDDYRQAMVRDHRLILRIHVTKAYGLAG"
     gene            3690..>5327
                     /locus_tag="VGN19_02140"
     CDS             3690..>5327
                     /locus_tag="VGN19_02140"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEV7194714.1"
                     /translation="MASQLSGIPVHASADDVLAALDPEQREVAAHPLGPMCVLAGAGT
                     GKTRAITHRIAYGVHSGAYQPQRVLAVTFTARAAGEMRTRLRDLAVGGVQARTFHAAA
                     LRQLHFFWPQSVGGAAPEVMSQKASAVAQAAASLRLDLARDRTAIRDLAAEIEWAKVS
                     MLTPETYAAGARAARREPPGLDVTAMARVLEAYEQVKTQRGVIDFEDVLLLTVGMLAE
                     RDDIARAVRSQYRHFVVDEYQDVNALQQRLLDLWVGERDDVCVVGDPAQTIYSFTGAS
                     PRHLLEFTTRHPTSQVVRLVRNYRSTAPIVGLANLIVRGPSGSLRGHAVQLQAQSGDG
                     PVPSLTAHADDPAEAASVAAEIADRVGAGVSPAQIAVLFRTNGQSEAFESALAERGVP
                     YLVRGGERFFSRREVRDAVLLLRGAARSDDGSAPLPELVRDVLLGAGWTREAPTSGGA
                     AREQWESLAALAALADELVVAHPEARLPDFVRELDERAAAQHAPAVRGVTLASLHAAK
                     GLEWDVVFLVGCSDGYLPITMADTPEAIEEERRLTYVG"
BASE COUNT          738 a         1843 c         1927 g          819 t
ORIGIN      
        1 ccggcagcgc cgacgaggac ccgggcgacg acgaggccct gccagcgatg aaggagctct
       61 tccttgccag cgagtgggcc caccggaccc cggcagagat cgagctcgcc ctcgagacgg
      121 tcatcgacgg gatcgccgtg cggggcagga tcgatgccgt gttcccgcgg ccgggtggcg
      181 gctacacgat cgtagactgg aggacgggtt ccaagccctc cggtgaggtg gcgcgcaccc
      241 gggcgctgca gctcgccgcg taccgggtgg cgttcgcgcg gctgcgcggc ctcgaccccg
      301 acgaggtcga tggtgcgttc tactacgcag gcacgggcga gacggcgtgg ccggacctgc
      361 ccgacgagac ggcgttggct gagctactcg gcgcagtgcc gccggtcgac gtgcccgcag
      421 ctgctagcgc tcggggtggg tgaagccggg ctcgaactca ggtcccgggt cgtgcccgcc
      481 gaagtgcggc tcgggctcag actcggactc ggactcgggc tcgggctcgg actcgggctc
      541 gggctcggac tcggactcgg actcagactc agacggggtg tgcgtgttgg acgctgagct
      601 gggcgcatcg acgggctcca cgccgggccc tacgccgtgc tcctccgtag gttcgtccgt
      661 ctcagcggcg gtcttggcga acatcgcatc cacgtcgtcg tcgtcgatgc tgtcctcctc
      721 gtccaggacc gagggcggca ccagcagtgg gcccttccgg cgggccggcg caacggccgg
      781 tcggctgtag tcgctctcgg actcctcctc caggtgcagg cgctcatcga gccggcgcaa
      841 ggcactggcg tggcgttcga cctgcatccg atcgccgtgg gcaaccgcgg ccaacaatgc
      901 gacgactgtg cgcatctccg aggacagcct ggctcgtcga agcaagtgcg ggtcggggcg
      961 ttcgctgcgg gcgtgggcgt acgcctccat caccgtctcg agcgccagcg gcggggcctg
     1021 ggtggcgagg gcgaagaagt cgtcggcggg gtcggccacc ttggcgtcct cccagccggt
     1081 gacggccttc acggtgccgg tcgtggcgtc ctcctcgtcc tcgaagacca ccaggacctg
     1141 gtcgccggtc aggtcaccat gggtgggggt gggggcgaac cgccacaacc tgacgtcctc
     1201 cagggccttc tcccaacggc cgagcaggcc ggtcgggacg tggccggtgg cggcggcacg
     1261 gtccagctca ccgagacggc gggtgcggta ggtgtcggcg tcataggccg gcaggccagc
     1321 ctcgtcgaaa agggcgtgat cggcgttgtg cagggccgcg atcgctcgac caagctccgc
     1381 cgccaggcct ggtccggcgg ggagggctgc gaagtcgatg cttgcacccg gcaggtatgg
     1441 gtagacagcc gcgcgaccgc cctccttcag cggggcgaac ccccggggcg taggcacgcc
     1501 gaaaggcagt cgtcgcgaga gcaggccaag cagcccgaat gtcgactcca tctcggcagc
     1561 ggccgcctgg ctgcgtggca cgcgcaccac ccaccgccgg tgctgggtgt cctggacgaa
     1621 cgccaggtca tagtggtcgt cggggacgcc cgggactgcc tcgacgctgg cggggtcaag
     1681 tcccggcacg gcagcgctgg ccagggcggc aaggaagagg gggctgcggt ccacacggtc
     1741 accgtatgcc gaatgggcgc ctcgagggtg gaggcaggcg ctcgcctgcg gcaccggttg
     1801 ctgactcgcg tcggctcgcg tcggcttagg gtggtggtcg tgggccgccc cgtcgagact
     1861 ttgccgaacc tcgccctcgc ccaacccggt ctcgccaggc acgctgaccg gcggctggaa
     1921 cccaacctcg taccgaccct gctggccgat cccagcacgc gcgtcgtcga cctgcaccgc
     1981 gatcgggtcg agctgacgga agggccgaac ggtccagccc tgacgcagcg ctcaccgcga
     2041 cccgacgacc acgagcggct ggtggtgttc cttgggcagg acgacggcgg cgccggcgac
     2101 gacggtgaca cggcatacct ggcggtggtg gaaccggacg ccgaacccac tgaccacccg
     2161 gagtggcgca ccctgcggca gtgcggggcg gacctggccg accgcgacgc caccctgttc
     2221 gcgaccgcct tggcgctcgc caactggcat gcgacccatt cgcattgccc tcgctgcggt
     2281 gccgcgactg agccttcgca gggagggtgg ttgcgggtgt gtccgcgaga cgacagccag
     2341 cactacccgc gcaccgatgt cgccgtgatc atgtcggtag tcgacgagca ggaccggcta
     2401 ctgctggccc gtggcgccga ctggggggag ggtcggttct ccgtgctggc ggggttcctc
     2461 gagcccgggg agagcctcgc ggcagcggtg accagagagg tgtacgagga agtcggaatc
     2521 gtggtccggg acgtcgagta cctcggtgac cagccctggc cgttccccaa ctcgctcatg
     2581 gtcggtttca cggctcgcgc ggacgcgagc gagctccacc tccaggacgc ggagatcgcc
     2641 gaggctcggt ggttcacccg cgaggagtat cgcgaggtgc tggcgtccgg ccgggtttcg
     2701 cggtccacgc ggctgtccat cgccaggcgc ctcatcgaac gctggctcgg tcacggcctc
     2761 gacgagcaac ccgcgcctgt ctaaggggcg ggtgcctcgt tacgccgcga gccgcttctt
     2821 gacctcgttg agcgaggggt tggtggcggc cgagccgtcc gggaacagga gcgtgggcac
     2881 ggtctggttg cccccgttga cctccatgac gaactgcact gcgtcgggct cgtcctcgat
     2941 gttcacctcg gtgaacggga tgccctcgcg acccatctga gccttgagcc ggttgcagta
     3001 gccacaccac gacgtggtga acatggtcac ggagccgggg gctggggcct tcgtcgcgct
     3061 ggtcgccatg atgtccttcg ggtcgaaatc gggcgtttca gcggatgtaa caccttcagc
     3121 ggcctgtgtc ttccgctgcg gggatgtgat cttgatgacc atgatgggac ttatgccaac
     3181 tccgccagct cccgttgtgg accccgccct gctcgccctg gcacagggcc gcaacctcgg
     3241 gaccctcgcc gccgtcaaga agaacggccg tccgcagctg tccatggtca acttcgccct
     3301 cgaccccgaa ggcagcacgg tccgggtctc ggtggtggac ggccgcgcca aggtcgcgaa
     3361 cctgcgccgc gatccgcgtg catcgctcct ggtcacctca ggcgacggct ggtcgtatgc
     3421 cgtcctcgag ggcgacgccc agttctcacc ggtcgcgtcg gcgaccgatg atgcgaccgt
     3481 cgaggagctc gtcgagctgt accgcacgat ccggggcgaa gagcatccgg actgggacga
     3541 ctaccggcag gcgatggtcc gcgaccaccg cctgatcctg cggatccacg tcaccaaggc
     3601 ctacggcctg gccggctagg cagacacctg ggccgtgagc agcccggccg ggctgggcgc
     3661 tgtcggctgc gtctgacagg atcgcggcga tggccagcca gctcagcggc atacccgtgc
     3721 acgcctccgc cgacgatgtc ctcgcggcgc tcgatcccga gcagcgggag gttgccgcgc
     3781 accccttggg gccgatgtgc gtcctcgcgg gggccggcac gggcaagacg cgagccatca
     3841 cccaccgcat cgcctatggc gtgcactccg gcgcctacca gccgcagcgg gtgctggccg
     3901 tgacgttcac ggcccgcgcg gcgggggaga tgcgcacccg gctgcgcgac ctcgcggtcg
     3961 gtggggtgca ggcgcggacg ttccacgccg cggccctgcg tcagctgcac ttcttctggc
     4021 ctcagtcggt gggtggggcc gcgcctgagg tgatgagcca gaaggcttcg gcggtggctc
     4081 aggcggcggc ctcgcttcgg ctcgacctcg ctcgggaccg cacggccatc cgggacctgg
     4141 ctgccgagat cgaatgggcc aaggtctcga tgctcacccc cgagacgtat gccgccggag
     4201 cccgggccgc ccggcgcgag cctcccggcc tcgatgtcac cgcgatggcg cgggtgctcg
     4261 aggcctacga gcaggtcaag acccagcgtg gggtcatcga cttcgaggac gtccttctgc
     4321 tcacggtggg catgctggcc gaacgcgacg acatcgcgcg ggccgtacgg tcgcagtacc
     4381 gccatttcgt cgtcgacgag taccaggacg tcaacgccct gcagcaacga ctgctcgacc
     4441 tgtgggtggg ggagcgtgat gacgtgtgcg tcgtcggtga cccggcccag acgatctact
     4501 cgttcacagg ggccagcccg cgacacctgc tcgagttcac cacccgacac cccacctccc
     4561 aggtcgtccg cctggtccgc aactaccggt ccaccgctcc gatcgtgggt ctggccaacc
     4621 tcatcgttcg cggcccgtca gggagcctgc gcgggcacgc cgtccagctg caggcgcagt
     4681 ccggtgacgg gccggttccg tcgctgactg cccacgcgga cgacccggcc gaggccgcgt
     4741 ccgtcgccgc cgagatcgcg gaccgggtcg gcgcaggagt ctccccggcg cagatcgcgg
     4801 tgctctttcg gaccaacggc cagtccgagg ccttcgagtc ggcgctggcc gaacgcggcg
     4861 tcccctatct ggtgcgcggt ggggagcgct tcttctcccg acgcgaagtc cgcgacgcgg
     4921 tgctcttgct ccgcggggct gcccgctcgg acgacgggtc cgcaccgttg cctgagctcg
     4981 tccgtgatgt gctgctgggg gctggatgga cccgtgaggc cccgacctcg ggaggagccg
     5041 cgcgcgaaca gtgggagtcg ctcgccgcgc tcgcggcgct ggccgatgag ctggtggtgg
     5101 cccatcccga ggcccggctg cccgacttcg tacgcgagct cgacgaacgc gccgccgccc
     5161 agcacgcgcc tgcggtccgg ggcgtgacgc tggcctcgct tcacgccgcg aaggggctgg
     5221 agtgggacgt cgtgttcttg gtcggctgct ccgacggcta cctgccgatc accatggccg
     5281 acaccccgga agcgatcgag gaggagcggc ggctgaccta cgtgggc
//
LOCUS       DASYFY010000113         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_796240, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000113 DASYFY010000000
VERSION     DASYFY010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796240"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1227)
                     /gene="mshA"
                     /locus_tag="VGN19_02145"
     CDS             complement(<1..1227)
                     /gene="mshA"
                     /locus_tag="VGN19_02145"
                     /EC_number="2.4.1.250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010125 - mycothiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-inositol-3-phosphate glycosyltransferase"
                     /protein_id="HEV7194715.1"
                     /translation="MSCCERIERVAMLSVHTSPLEQPGTGDAGGMNVYVVEVAHQLAR
                     RGVEVEIFTRTTTAELPPTVELEPGVLVRHVTAGPYEGLGKDDLPGQLCAFAAGVMRT
                     GAHAPEDHYSLVHSHYWLSGQVGWLAADRWQVPLVHTMHTMARVKNAHLAEGDDPEPA
                     GREIGEVQVVEAADRLIANTLGERNELIELYAADPDKVVVVPPGVDLSLFSPGEPRAA
                     RAELGLPLDAKILLFVGRIQPLKAPEVLVKAAAELLARHPSWRGELVVAVLGGPSGSG
                     LAHPHALEELAVELGIAAQVRFVPPVPRPELAQWYRAADLVVVPSHSESFGLVAVEAQ
                     ACGTPVVAADVGGLPTAVGDAGVLVDGHEIPKWADAIEALLLNPGQREMLSRKAIQHA
                     ALFGWDRTTERLFEVYI"
     gene            complement(1282..>1672)
                     /locus_tag="VGN19_02150"
     CDS             complement(1282..>1672)
                     /locus_tag="VGN19_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194716.1"
                     /translation="GRVYDSHRSMALTIRIELAGSFIRVSASVNGADGVVFHLDHETR
                     TMGLAPALPPVNLRRSANWIAPSALAGQFAFSTPLGTDIGAGPQRVARGVDVRSAGRT
                     DLHIWSDAAYLTVSSQARPKPTDTATP"
BASE COUNT          251 a          583 c          598 g          240 t
ORIGIN      
        1 gatgtagacc tcgaacaacc gctccgtcgt ccggtcccag ccgaacaacg cggcgtgttg
       61 aattgccttg cgcgacaaca tctctcgctg tcccgggttg agcaggagtg cctcgatggc
      121 atcggcccat ttggggatct cgtgtccgtc gaccagcact cccgcgtcac cgactgcggt
      181 gggcagtcct cccacgtcgg cggccaccac cggggtgccg caggcctggg cctcgaccgc
      241 gacgagtccg aaggactccg agtgggacgg cacgaccacc aggtcggccg cgcggtacca
      301 ctgtgcgagc tcaggcctgg gaacgggcgg gacgaaccgc acctgggccg cgatgcccag
      361 ctcgaccgcg agctcctcga gcgcgtgcgg gtgcgccagg cccgatcccg acggtccgcc
      421 gaggacggcc acgacgagct caccgcgcca ggacgggtgc cgggccaaca gctcggccgc
      481 cgccttcacc aggacctcgg gggccttcag tggctggatc cggccgacga acagcaggat
      541 cttcgcatca aggggcagac ccagctccgc gcgtgctgcg cgcggctcgc ccggcgagaa
      601 cagcgacagg tccacacccg ggggcacgac gaccaccttg tcggggtcgg cggcatacag
      661 ctcgatcagc tcgttgcgct cgccgagggt gttcgcgatg aggcggtcag cggcctccac
      721 gacctggacc tcgccgatct cgcggcccgc cggctcgggg tcgtcgccct ccgcgaggtg
      781 cgcgttcttg acccgcgcca tggtgtgcat ggtgtgcacc agcgggacct gccagcggtc
      841 agccgccagc catcccacct gacccgacag ccagtagtgc gagtgcacca ggctgtagtg
      901 gtcctcgggc gcgtgtgccc cggtgcgcat gacgcccgcc gcgaaggcgc acagctgacc
      961 cggcaggtcg tccttgccca gtccctcgta aggaccggcg gtgacgtggc ggaccaggac
     1021 gccgggttcg agctcgacgg tcggcggcag ctccgccgtc gtggtacggg tgaagatctc
     1081 gacctcgacg ccgcggcgtg ccagctgatg ggccacctcg acgacataga cgttcatgcc
     1141 accggcatcg cccgtgcctg gctgctccag cggagaggtg tgcacgctca gcatggcgac
     1201 gcgttcgatg cgctcgcagc aggacatgct gccgagtctg ccacggctgg ccgtggggct
     1261 cccgcgaggc gctgccgaga gctacggagt ggcggtgtcg gtgggcttcg gtcgcgcctg
     1321 ggaggacacg gtcaggtatg ccgcgtcgct ccagatgtgg aggtcggtgc gcccggccga
     1381 gcggacgtcc acgccccgcg ccacccgctg gggacccgca ccgatgtccg tgcccagtgg
     1441 ggtgctgaac gcgaactggc cggcgagggc gctgggggcg atccagttgg cagacctgcg
     1501 gaggttgacc ggcgggaggg caggcgcaag gcccatcgtg cgggtctcgt ggtccaggtg
     1561 gaagacgact ccgtcggccc cgttgaccga cgccgagacc cggatgaacg agcccgccag
     1621 ctcgatcctg atcgtgagag ccatcgagcg atgactgtcg tagacccgac cg
//
LOCUS       DASYFY010000114         7629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1532213, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000114 DASYFY010000000
VERSION     DASYFY010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7629
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1532213"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..2155
                     /gene="ftsH"
                     /locus_tag="VGN19_02155"
     CDS             59..2155
                     /gene="ftsH"
                     /locus_tag="VGN19_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEV7194717.1"
                     /translation="MDFKRILRAPLFWVVAVVAITLMVFSLSDTGGYTRIDTSAAQQL
                     ITDKKVERAVVTDNVVVNLDLKKGQTYSDGKGIKGATKVQTQFVDAAGPGFIKLLDDN
                     QPPGGTDQVVKDTNPFLALLGSILPVIILLGLFWFLMNQMQGGGSRVMQFGKSRAKLA
                     TKDTPKVTFADVAGADEAVEELYEIKEFLSEPAKFLAVGAKIPKGVLLYGPPGTGKTL
                     LARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGR
                     HRGAGLGGGHDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDILDPALLRPGRFDRQ
                     IAVEAPDMIGRHRILEVHSQGKPMATGVDLLAVARRTPGFTGADLANVLNEAALLTAR
                     GDRLLIDDAALDEAIDRVIAGPQKRTRIMSAKERKITAYHEGGHALVAAAMNHTDPVT
                     KVTILPRGRALGYTMVMPLDDKYSTTRNEILDQLAFAMGGRVAEEIVFHDPTTGAAND
                     IEKATAMARKMVTEYGMSERVGAIKLGSSGGEVFLGRDMGHQRDYSEEVASVVDKEVR
                     GLIDDAHDEAWHVINDNREILDRLVLDLLEHETLNAKELAAIFEPVRKRPLRPTWLSS
                     ETRLLSDQPPVLTPAEVAAQNGSANGLESAGHDLQTASAIERAAESGALTGADEHPPT
                     QIIEVPEGGQVDPREH"
     gene            2145..2738
                     /gene="folE"
                     /locus_tag="VGN19_02160"
     CDS             2145..2738
                     /gene="folE"
                     /locus_tag="VGN19_02160"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEV7194718.1"
                     /translation="MSTDGKRHAVDRPRAEAAVRELLIAVGEDPDREGLRETPARVAR
                     AYGEFFAGLTLDPAEVLSKTFQIEHEEMILVRDIEVYSMCEHHLVPFHGVAHVGYIPA
                     KDGRVTGLSKIARLVEMYARRPQVQERLTTQIADALITHLKAQGVIVVVECEHLCMSM
                     RGIRKPGSRTITSAVRGQLRDPATRAEAMSLLLGGKR"
     gene            2735..4459
                     /locus_tag="VGN19_02165"
     CDS             2735..4459
                     /locus_tag="VGN19_02165"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase
                     domain-containing protein"
                     /protein_id="HEV7194719.1"
                     /translation="MTQESTTSSATSRLLPNLLTANRVPRLLGNFTYLVGMFDLATGL
                     LGSLRHRLHGVMHVLPGYVSNAAVAGTVVSGILLLVLGHSLKRRKVRAWRAATWLVAL
                     SLVLHVVHFDPVAGLLSAAALTLLLLYRKEFRALGDPTTRWGAVVVGAVLLAVSVVAG
                     FATIWLNRRDIVGGWPPLNQVAEEIAWGLVGGTGPLAFTRDRSNDIVGAVLLGLGIMT
                     AFTTVYLVLRPPEPRPELTEDEDARLRDLLARHPDSLAYFNTRRDKSVVWSATGKAAI
                     AYRVVSGVMLASGDPIGDPEAWPGAIKAFLEEATAHAWTPAVLGCSEQAGIVWVRETG
                     FAALELGDEAVVDTAAFTLEGRPMRNVRQMVGRIGRAGYAVEISRVRDVPAGDRARAM
                     RDAAAWRSTDTERGFSMALGRLLDDRDPDCVWVAARQDGVVRAFLQFVPWGPDGMSLD
                     VMRRDSTADAGVNELMIVEALKAAPALGVTQVSLNFAAFRSALERGEKLGAGPILRIW
                     RRVLLIASRWLQIESLYRFNAKFQPRWQPRFLVYPTGSDLPRVGLAALEAEAFLTWPR
                     LGRLGGAR"
     gene            4501..5298
                     /gene="folP"
                     /locus_tag="VGN19_02170"
     CDS             4501..5298
                     /gene="folP"
                     /locus_tag="VGN19_02170"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEV7194720.1"
                     /translation="MGVVNVTPDSFSDGGEWFEPSAAVTHGLVLLEQGADILDIGGES
                     TRPGASRPSVKEELRRVLPVVRELTAAGAVVSIDTMRSEVAAAALSAGAALVNDVSGG
                     LADPAMASLVADAGTPFVAMHWRGHSAEMQSRAVYDDVVADVSAELVARAEALVAQGI
                     APQKIVLDPGFGFAKNAAHNWSLLRQLDRLLGLGFPVLVGTSRKAFLGRLGVPDGDSP
                     RPPLDRDLATAATSFHAATVGVWGVRVHHVPSTLDAMLVAQSLKEGT"
     gene            5295..6179
                     /gene="folK"
                     /locus_tag="VGN19_02175"
     CDS             5295..6179
                     /gene="folK"
                     /locus_tag="VGN19_02175"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEV7194721.1"
                     /translation="MTDQIILKGIAARGFHGVLESEKRDGQTFLVDVVMAVDLAPAGA
                     SDALSDTVNYAEVAGDVVALVEGESLDLIEALAARIADRVLARPLVEAVEVTVHKPEA
                     PVGHPFSDVQVRVTRERQARVVIALGSNLGDSLEILHDAAVSLYGLIDIIELSPVVET
                     DPVGGPDQAAYLNAVVTGTTHLAPLSLLAGLHDIERAHGRTREVHWGPRTLDLDLVQY
                     GDPVFDTDVRMDTPTLTLPHPRAHERAFVLVPWLQAEPEAALRVDGKVRRVADLVAGL
                     DVSGVRPGPDIDLLEGPW"
     gene            6173..6640
                     /locus_tag="VGN19_02180"
     CDS             6173..6640
                     /locus_tag="VGN19_02180"
                     /inference="COORDINATES: protein motif:HMM:NF022819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3180 domain-containing protein"
                     /protein_id="HEV7194722.1"
                     /translation="MVNGGRGLRWSQLVAVALVIGALAWLGWRLYLNGGRLLGLVSWV
                     STILLVAMAALVVAAGLPVRRFLRGEARKPLNPVRAARTLVLAQAAALTGAGLFGWYA
                     AQAAHALGDLNLPGYRTLVWRLGAVCAGALLLAGAGMLTQSMCRVEPPKDERD"
     gene            complement(6647..>7629)
                     /locus_tag="VGN19_02185"
     CDS             complement(6647..>7629)
                     /locus_tag="VGN19_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEV7194723.1"
                     /translation="EKLFEVRDYRQIMVLANRHDWLSAFSSELGVVLGVERMLGMEVP
                     QRAVWARTLLAELNRVLNHLMFLGSYPLELGAITPIFYAFREREELQAVMEEASGGRM
                     HYMFNRVGGLKEDLPAGWLERVAYAVASVRRRLPDLESLIVGNEILEARTRGVGVLTP
                     ELVAAYGVSGPIARASGVDVDLRRDEPYLAYAELFGPDGPGRVVTRSAGDCLSRLEVL
                     LEQTQVSLDLAEACLDRLRTLAPGPINVRLPKVLKVPEGDLYTATENPLGFNGYYLVS
                     RGDKTPWRLKLRSASFNNISVLAEVLPGNLIADMVAILGSMFFVVGDIDK"
BASE COUNT         1126 a         2697 c         2624 g         1182 t
ORIGIN      
        1 gcagcggcgc agaagctgat cgagcaggag gcacggggcg cccagccccg ctacacacat
       61 ggatttcaag cgcatccttc gggcccccct gttctgggtc gtggctgtcg tcgcgatcac
      121 cctcatggtg ttctcgctca gtgacaccgg cggctacacc cgcatcgaca cctcggctgc
      181 ccagcagctg atcaccgaca agaaggtcga gcgcgccgtc gtcaccgaca acgtcgtggt
      241 caatctggac ctgaagaagg gccagaccta ctccgatggc aaggggatca agggggcgac
      301 caaggttcag acccagttcg tcgacgccgc gggccccggc ttcatcaagc tgctggacga
      361 caaccagccg cccgggggaa ccgaccaggt cgtcaaggac accaacccgt tcctcgcgct
      421 gctgggctcg atcctgccgg tgatcatcct gctgggcctg ttctggttcc tcatgaacca
      481 gatgcagggc ggtggctcgc gggtcatgca gttcggcaag tcgcgggcca agctcgccac
      541 caaggacacc ccgaaggtga ccttcgctga cgtcgcgggt gctgacgagg cggtcgagga
      601 gctctatgag atcaaggagt tcctgtccga acctgccaag ttcctcgcgg tgggggccaa
      661 gatccccaag ggcgtcctgc tctacggacc gcctggtacc ggtaagaccc tgctggcccg
      721 cgccgttgcc ggcgaggccg gcgtgccgtt ctactccatc tccggctccg acttcgtcga
      781 gatgttcgtc ggcgtcggcg cctcccgagt gcgcgacctg ttcgagcagg ccaaggccaa
      841 tgcgcccgcc atcgtgttcg tcgacgagat cgacgccgtg ggccgtcacc gcggcgctgg
      901 tctcggcgga ggccatgacg agcgtgagca gaccctcaac cagctgctcg tcgagatgga
      961 tgggttcgac gtcaagacca acgtcatcct catcgccgcg accaaccgcc ccgacatcct
     1021 cgacccggcg ctgctgcgac cgggccggtt cgaccgccag atcgccgtcg aggcccccga
     1081 catgatcggc cgtcaccgca tcctcgaggt gcactcgcag ggcaagccga tggcgaccgg
     1141 cgtcgacctg ctggccgtgg cgcgccgcac ccctggcttc accggtgccg acctggccaa
     1201 cgtcctcaac gaggcagcgt tgctcacggc gcgtggcgac cggctgctca tcgacgatgc
     1261 cgcgctcgac gaggccatcg accgcgtgat cgccgggccg cagaagcgca cccggatcat
     1321 gtccgcgaag gaacgcaaga tcacggcata ccacgaaggt ggtcacgcct tggtcgctgc
     1381 ggccatgaac cacaccgacc cggtcaccaa ggtgaccatc ctgccgcgag ggcgcgccct
     1441 cgggtacacg atggtcatgc cgctggacga caagtactcc acgacccgca acgagattct
     1501 cgaccagctg gccttcgcca tgggcggccg agtggccgag gagatcgtct tccacgatcc
     1561 cacgaccgga gcggcgaacg acatcgagaa ggccaccgcg atggcccgca agatggtcac
     1621 cgagtacggc atgagcgagc gggtgggcgc gatcaagctg ggctcgtccg ggggcgaggt
     1681 cttcctcggc cgcgacatgg gccaccagcg cgactactcc gaggaggtcg cgagcgtggt
     1741 cgacaaggag gtccgcggcc tcatcgacga cgcccacgac gaggcctggc acgtcatcaa
     1801 cgacaaccgc gagatcctcg accgcttggt gctcgacctg ctcgagcacg agacgctgaa
     1861 cgccaaggag ctcgcggcca tcttcgagcc ggtgcgcaag cgcccgttgc gtcccacctg
     1921 gttgtccagt gagacccgcc tgctgtcaga ccagccgccg gtgctcaccc ccgccgaggt
     1981 ggctgcccag aacggctcgg ccaacggcct cgagtccgct ggccacgacc tccagaccgc
     2041 ctccgcgatc gagcgggccg ccgagagcgg tgcgctcacc ggtgccgacg agcacccacc
     2101 gacacagatc atcgaggtcc cggagggtgg ccaggtcgat cctcgtgagc actgacggca
     2161 agcggcacgc ggtcgaccgg ccgcgcgccg aggccgccgt gcgcgaactc ctgatcgcgg
     2221 tcggggagga tcccgaccgc gagggccttc gggagacccc agcccgggtg gcccgggcct
     2281 atggcgagtt cttcgccggg ctgacactcg acccggcgga ggtgctctcg aagaccttcc
     2341 agatcgagca cgaggagatg atcctggtgc gggacatcga ggtgtactcg atgtgtgagc
     2401 accatctggt gccctttcat ggcgtggcgc acgtcgggta catccccgcc aaggacggcc
     2461 gggtgaccgg actgtccaag atcgcccggc tggtcgagat gtatgcccgg cggccccagg
     2521 tccaggagcg tctcacgacc cagatcgccg acgccctgat cacccacctc aaagcacagg
     2581 gcgtgatcgt cgtggtcgag tgcgagcacc tctgcatgtc catgcgcggc atccgcaagc
     2641 ccggatcccg caccatcact tcagccgtgc gaggccagct gcgcgacccg gccacccgtg
     2701 cggaggcgat gtcgttgctg ctgggcggta agcggtgacc caggaatcca cgacctccag
     2761 cgcgacgagc cgcctgcttc ccaacctgct gacggcgaac cgggttccac ggctgctcgg
     2821 caacttcacg tacctggtcg ggatgttcga ccttgccacc ggtctgctgg ggagcctgcg
     2881 gcaccgcctg cacggcgtga tgcacgtgct ccccgggtac gtctccaacg ccgccgtcgc
     2941 cggtaccgtc gtctcgggca tcctgctgct cgtcctcggt cactcgctga aacgacgcaa
     3001 ggtccgcgcc tggcgcgcgg ccacctggct ggtggcgttg tccctggttc tgcacgtggt
     3061 ccacttcgac ccggtcgccg ggttgctctc ggccgcggca ttgacgctgc tcctgctgta
     3121 ccgcaaggag ttccgcgcgt tgggagaccc caccacccgg tggggtgccg tcgtcgtcgg
     3181 agccgtcctg ctcgccgtct cggtcgtcgc cgggttcgcc acgatctggc tgaaccgccg
     3241 cgacatcgtc ggaggctggc cgcccctgaa ccaggttgcc gaagagatcg cctggggcct
     3301 ggtcgggggc accgggccgt tggccttcac ccgcgaccgg tccaacgaca tcgtgggtgc
     3361 agtcctgctg gggctgggca tcatgacggc gttcaccacc gtctacctgg tgctgcgccc
     3421 gccggagccc agaccggagc tcaccgagga cgaggacgcc cggctccgtg acctgctggc
     3481 tcgtcacccc gactcgctgg cgtacttcaa cactcgtcgg gacaagtcgg tggtctggtc
     3541 ggctaccggc aaggccgcca tcgcctaccg ggtcgtctcc ggggtcatgc tggccagcgg
     3601 tgacccgatc ggagatcccg aggcctggcc cggggccatc aaggcgttcc tggaggaagc
     3661 caccgcccac gcctggacgc ccgccgtcct gggctgctcc gagcaggccg gcatcgtctg
     3721 ggttcgcgag accggcttcg cggctttgga gctgggcgac gaggccgtcg tcgacaccgc
     3781 ggccttcacc ctcgaggggc gcccgatgcg caacgtgcgc cagatggtgg gccggatcgg
     3841 ccgcgccggg tatgccgtgg agatcagccg cgtgcgcgac gtccccgccg gtgaccgggc
     3901 cagggccatg cgcgatgccg cggcctggcg gtccacggac accgagcgag ggttctccat
     3961 ggcgttgggg cgcctcctgg atgatcgcga cccggactgc gtgtgggtcg ccgcgcggca
     4021 ggacggggtg gtgcgggcgt tcctgcagtt cgtgccgtgg ggcccggacg ggatgtcgct
     4081 ggacgtgatg cgccgcgact cgaccgccga cgccggggtc aacgagctca tgatcgtcga
     4141 ggccctcaag gccgcgcccg cgttgggcgt cacccaggtc tcgctgaact tcgcggcgtt
     4201 ccggtccgcg ctcgaacgcg gcgagaagct gggtgcgggc ccgatcctgc ggatctggcg
     4261 ccgggtcctg ctgatcgcct cgcgctggct gcagatcgag agcctctatc ggttcaacgc
     4321 caagttccag ccgcgctggc aaccgcggtt cctggtgtat cccaccggtt cggacctgcc
     4381 ccgggtcggg ctggccgcgc tcgaggcgga ggccttcctc acctggccca ggctcggtcg
     4441 gctcggcggt gcccggtgag gtcctggcct ctcgtccggg ccgaccgcct gccggtggtg
     4501 atgggcgtcg tcaacgtcac cccggactcg ttcagtgacg ggggtgagtg gttcgagccc
     4561 tcggcggcgg tgacgcacgg cctcgtgctg ctggagcagg gggccgacat cctggacatc
     4621 ggcggcgagt cgacccggcc gggcgccagc cgcccgtcgg tcaaggagga gctgcgccgg
     4681 gtgctgccgg tggtgcgcga gctgaccgcc gccggtgccg tggtcagcat cgacaccatg
     4741 cggtccgagg ttgcagcggc ggctctgtcg gcgggcgcgg ccctcgtgaa cgacgtcagc
     4801 ggcgggcttg ccgaccccgc catggcgagc ctggtggcgg atgccggaac cccgttcgtg
     4861 gccatgcact ggcgcgggca cagcgccgag atgcagtccc gtgcggtgta cgacgacgtg
     4921 gtcgcggacg tgtccgcaga gctggtcgcc cgcgccgaag cgctggtcgc ccaggggatc
     4981 gccccgcaga agatcgtgct cgaccccggc ttcggcttcg ccaagaacgc tgcccacaac
     5041 tggtcgctgc tccgtcagct cgaccgcctg ctcgggctcg gattccccgt gttggtggga
     5101 acttcccgca aagcgttcct gggccggttg ggcgtgcccg atggcgacag cccccgccct
     5161 ccgctcgacc gtgacctcgc gaccgccgcc acctcgttcc atgccgccac cgtgggagtc
     5221 tggggcgtaa gggtgcacca cgtgccgtcg accctcgacg ccatgctggt tgcccagtcc
     5281 ctcaaggagg gcacgtgacc gaccagatca tcctcaaggg catcgccgcc cggggcttcc
     5341 acggcgtcct ggagtccgag aagcgcgacg gccagacgtt cctcgtggac gtcgtcatgg
     5401 cggtcgacct ggcccctgcg ggtgccagcg acgcactgtc cgacaccgtc aactacgccg
     5461 aggtggccgg ggatgtcgtg gccctggtcg agggcgagtc gcttgacctg atcgaggccc
     5521 tcgcggcccg gatcgccgac cgggtgctgg cccggccgct cgtggaggcc gtcgaggtga
     5581 cggtgcacaa gcccgaggcg ccggtgggcc atccgttctc cgacgtccag gtgcgggtga
     5641 cccgagagcg ccaggcgcgg gtcgtcatcg cgctgggctc gaatctcggt gactccctgg
     5701 agatccttca cgacgcggcg gtcagcctgt acggcctcat cgacatcatc gagctttccc
     5761 cggtcgtcga gaccgacccg gtgggcggcc cggaccaggc ggcatacctc aacgccgtgg
     5821 tgaccggcac gacccacctc gcgccgctgt ccctcctggc gggcctgcat gacatcgagc
     5881 gcgcccacgg gcgtacccga gaggtgcact ggggcccgcg aaccctcgac ctcgacctgg
     5941 tccagtacgg cgaccccgtc ttcgacaccg acgtgcggat ggacaccccg acgctgaccc
     6001 tgccgcatcc gcgcgcccat gagcgcgcct tcgtcctggt gccctggctc caggccgagc
     6061 cggaggccgc gctgcgggtc gatggcaagg tccgccgcgt ggccgacctc gtcgccggcc
     6121 tggacgtctc gggcgtgcgc ccgggcccgg acatcgacct cctcgagggc ccatggtgaa
     6181 cgggggccgc ggcctgcgct ggagccagct cgtggccgtg gctctggtca tcggagcgct
     6241 ggcctggctg gggtggcggc tctatctgaa cggcgggcga ctgctcggcc tggtgtcctg
     6301 ggtctccacg atcctgctgg tcgccatggc cgcgctcgtc gtcgccgcgg gcctgccggt
     6361 gcggcgcttc ctgcgaggtg aggcgcgcaa gccgctcaac cccgtgcgcg ccgcgcgcac
     6421 cctcgtgctg gcccaagccg cggcactgac cggggcgggt ctgttcggct ggtatgccgc
     6481 gcaggcggct cacgcgctcg gtgacctcaa cctgcccggc taccggacgt tggtgtggcg
     6541 gctgggtgcg gtgtgcgccg gcgcgctgct gctggcgggg gcggggatgc tgacccagtc
     6601 gatgtgccgg gtggagcccc cgaaggacga gcgcgactga gttcggctac ttgtcgatgt
     6661 cgccgaccac gaagaacatc gagcccagga tcgccaccat gtcggcgatc aggttgcccg
     6721 gcagcacctc ggccagtacc gagatgttgt tgaacgacgc cgaccgcagc ttgagccgcc
     6781 acggagtctt gtcgccccga gagaccaggt agtagccgtt gaagcccaag gggttctcgg
     6841 tggccgtgta caggtcaccc tcgggaacct tgagcacctt gggaagccgg acgttgatcg
     6901 gtccgggcgc cagcgtcctc agccggtcca ggcacgcctc cgccaggtcg agcgacacct
     6961 gggtctgttc gagaaggacc tcgagcctgg acaggcagtc gccggccgag cgagtgacca
     7021 cccggccagg accgtcgggg ccgaacagct cggcatacgc caagtagggc tcgtctcgac
     7081 gcaggtccac gtcgaccccg ctggcgcgcg cgatcggccc ggacaccccg taggcggcca
     7141 ccagctcggg ggtcagcacc ccgaccccgc gggtgcgcgc ctcgaggatc tcgttgccga
     7201 cgatgagcga ctccaggtcg ggtagtcgac gacgcaccga ggccacggca tacgcgacgc
     7261 gctcgagcca gccggcggga aggtcctcct tcagaccgcc gacccggttg aacatgtagt
     7321 gcatccggcc gcctgaggcc tcctccatga cggcctggag ctcttcgcgc tcacggaagg
     7381 cgtagaagat cggggtgatg gcgccgagct ccagcgggta cgagcccagg aacatcaggt
     7441 ggttcagcac ccggttgagc tcggccaaca acgtccgggc ccacaccgct cgctgcggga
     7501 cctccatgcc cagcatccgt tcgacgccaa gcaccacccc gagctcggag gagaaggcgg
     7561 acagccagtc gtggcggttc gccagcacca tgatctggcg gtagtcacgc acctcgaaca
     7621 gcttttcgg
//
LOCUS       DASYFY010000115         1977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_376398, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000115 DASYFY010000000
VERSION     DASYFY010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376398"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..>1977)
                     /locus_tag="VGN19_02190"
     CDS             complement(80..>1977)
                     /locus_tag="VGN19_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005198162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEV7194724.1"
                     /translation="PGGGIMALRGHASIQGSTDIPTLYNILPGYLAMPVAGTHDTWSD
                     YLGSIANKRQKGFWANADAYAVSLLRAWWGDSATAENDWCFGHLPRLTGAHGTYQTAM
                     AMLDDEVEGYFLFGQNPAVGSAHGRMQRLGLAHLKWLVVRDLAMIESATFWKDGPEIA
                     TGELRTEDIDTEVFFLPAAAHTEKAGTFTQTQRLLQWRHQAVAPPGDAQSDLEFVFEL
                     GRRIREKLRDSTDERDRPLLDLTWDYPVDAHGEIEPESVLREINGTQLTGDDAGKPLD
                     AYTQLRADGSTAAGCWIYTGVFGGGVNHAASRKPGREQSLVAPDWGWAWPANRRILYN
                     RASADPDGHPWSRRKAYVWWDEANGTWTGDDVPDFPPTTRPDHRPPPDTGGPEGLAGD
                     DPFVMQSDGKGWLFAPQGMLDGPLPAHYEAQESPVQNPVYAQQSNPARTVFPRKDNLW
                     SPSGDEPGAEVYPFVFTTYRLTEHHTAGGMSRWLPYLSELQPEFFCEVSPELALERGL
                     ENGGWATLVSARSAIEARVLVTERMTPLVIKGRTIHQIGLPYHWGVGSDAVVSGDAAN
                     DLVGVALDPNVQIQETKVGSCDIQPGRRPRGEALLRLVADYQSRAGTTVRTGNEHDTS
                     GRATRET"
BASE COUNT          271 a          684 c          697 g          325 t
ORIGIN      
        1 atgcgtggca ggtcatctgg ccaccgagcg tcggccgccg gatcggtccg ccccgccagc
       61 tggttgcccc agatccccat caggtctccc tcgtcgcgcg gcccgacgtg tcatgttcgt
      121 tgcctgtgcg cacggtagtc cccgcacgcg actggtagtc ggcgaccagg cgcaggagcg
      181 cctcgccccg tggtcgccgc cccggctgga tgtcgcacga cccgaccttc gtctcctgga
      241 tctgcacgtt cgggtccagg gcgacaccga ccaggtcgtt cgccgcatcc ccggacacga
      301 ccgcatcgct gccgacgccc cagtggtagg gcagcccgat ctggtggatc gtccgtccct
      361 tgatcaccag gggggtcatc cgctcggtca cgagcacccg tgcctcgatg gccgagcggg
      421 ccgacacgag cgtcgcccag ccgccgttct ccaggccgcg ctccagggcc agctcggggc
      481 tgacctcaca gaagaactcg ggctggagct cggagaggta gggcagccag cgtgacatgc
      541 ccccagccgt gtggtgctcg gtgagtcgat aggtggtgaa cacgaacgga tagacctccg
      601 ctccgggttc gtcgccactg gggctccaga ggttgtcctt gcgcgggaag accgtgcggg
      661 ccgggttgga ctgctgggcg tagacagggt tctggaccgg ggactcctgc gcctcgtagt
      721 gggcaggcag cgggccgtcg agcattccct ggggtgcgaa cagccagccc ttgccgtcgg
      781 actgcatgac aaaggggtcg tcgccggcca ggccctcggg gcctccggtg tccggaggcg
      841 ggcggtggtc ggggcgcgtg gtcggcggga agtcggggac gtcgtctccg gtccacgtgc
      901 cgttggcctc gtcccaccac acgtaggcct tgcggcggct ccacgggtgg ccgtcgggat
      961 cagcggacgc ccggttgtag aggatgcggc ggttcgccgg ccaggcccag ccccagtccg
     1021 gggcgaccag tgactgctcg cgacccggct tacggctggc ggcgtggttc accccaccgc
     1081 cgaacacccc cgtgtagatc cagcaccccg ccgcagtcga tccgtcggcg cggagctggg
     1141 tgtacgcgtc gagcggtttg cccgcgtcgt cgccggtgag ctgcgtgccg ttgatctctc
     1201 gcagaaccga ctccggttcg atctcaccgt gcgcatcgac ggggtagtcc caggtgaggt
     1261 ccagcagcgg gcggtcgcgc tcgtcggtgg agtcccgcag cttctccctg atgcgccgac
     1321 ccagctcgaa gacgaactcc aggtcgctct gagcgtcccc cggcggcgcg acggcctgat
     1381 ggcgccactg gagcaggcgc tgggtctggg tgaaggtgcc ggccttctcg gtatgcgccg
     1441 ctgccggcag gaagaacacc tcggtgtcga tgtcctcggt tcgcagctcg ccggtggcga
     1501 tctcggggcc gtccttccag aacgtcgccg actcgatcat cgcgaggtcg cgcaccacga
     1561 gccacttcag atgggccaac ccgaggcgct gcatccgccc gtgcgccgaa cccaccgcgg
     1621 ggttctgccc gaagaggaaa tacccctcga cctcgtcgtc gagcatcgcc atcgccgtct
     1681 ggtacgtccc gtgggcgccg gtcagtcgag gcaggtggcc gaagcaccag tcgttctcgg
     1741 ccgtcgcaga gtcgccccac caggccctca gcaggctcac ggcgtaggca tcggcattgg
     1801 cccagaagcc cttctgccgc ttgttcgcga tggagccgag gtagtcggac cacgtgtcat
     1861 gcgtgcccgc gaccggcatg gcgaggtagc cgggaaggat gttgtacagc gtggggatgt
     1921 cggtggaccc ctggatgctc gcgtggcctc gcagcgccat gatgccgccg ccggggc
//
LOCUS       DASYFY010000116         3390 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_113493, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000116 DASYFY010000000
VERSION     DASYFY010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113493"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1119
                     /locus_tag="VGN19_02195"
     CDS             <1..1119
                     /locus_tag="VGN19_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEV7194725.1"
                     /translation="LIPALCVVGARRLLRRGTEIPPEEGVFSRLAQWVHRHPVPIIVV
                     VLVALLGLAMPALDLRLTSSGTGLLPTSSSTRTFFDGLATDYPRLGAPDVTVVAKASL
                     DQTKAYAAGLRLPSGVAVTGVASVGSGLSVVRLDAPGGPLDDPARALVRQLKTERPRF
                     TTYVTGSASGLQDFIDSMWQRAPYAFALVALATLILLFLMTGSVVIPVKALLLNVVSL
                     GASLGVSVWVFQQGHLQGLLDFSSVGAVESTIPLLVLSFGFGLSMDYEVFLLSRIVEL
                     HEQGHDNDEAVVLGLQRSGRIITSAALLVVIVFSGFVAGQLLAIKETGVGLATAVALD
                     ATLVRMLLVPATMTLLGDWNWWAPAGLRRWHSRFGITE"
     gene            1116..1880
                     /locus_tag="VGN19_02200"
     CDS             1116..1880
                     /locus_tag="VGN19_02200"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7194726.1"
                     /translation="MTLEHLTSHAEILDHSADDAFVRYDLPTALEQPGWGYGDALAVP
                     RLSQLRRLGLLVMGPVTEVDHLVGELVARDLLPHDVGSVTVAAPALPGVAAHLDVADG
                     NDWEWMYAAAEPSAVAAEDRLVSLSETDLPDLQGLLERANPRTDARPFESPDQTWVGV
                     RDAVGRLVACGVREPNHAGYPILSGITVDPAQRGTGLGVAVTAYLTRQAVAEVGVCTL
                     GMYSDNDVARRVYTGLGYGDIHRWSSRRLARAVSSA"
     gene            1967..2803
                     /locus_tag="VGN19_02205"
     CDS             1967..2803
                     /locus_tag="VGN19_02205"
                     /inference="COORDINATES: protein motif:HMM:NF016162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEV7194727.1"
                     /translation="MTIDLSAQWRAGLAELRYASTPKRLLATLDGEPALDTTDALLVW
                     EPRRVVPHYAVPARDLRIGLEELASAPPPPDLPPVMGPQHFSLHTCAGTALAPTSGAC
                     AGVEVGFRPDDPALGGRIILDFARFEWTEENEPVMGHAHDPFKRIDVLRSDRHVVVRL
                     GDTVLADSRRAHALYETSLPVRWYLPREDVRMDLLTPSQTHSVCAYKGRASYLSAELE
                     GGADIGWFYPDPLHDALRVRDLVAFWSERTDLTVDGVRVKGRMPGAAAGGPQDRAAGG
                     AP"
     gene            2800..3018
                     /locus_tag="VGN19_02210"
     CDS             2800..3018
                     /locus_tag="VGN19_02210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194728.1"
                     /translation="MTEPDPAATNPGLYTVVFENDEVRVLEYRDKPGDRTTPHAHPDS
                     VMYSLTPFRRRLRSAGLERDVELGPHGV"
     gene            complement(3025..3321)
                     /locus_tag="VGN19_02215"
     CDS             complement(3025..3321)
                     /locus_tag="VGN19_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018772255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194729.1"
                     /translation="MATLHIEHAITDYRTWKTAFDRFADRRAAAGVLAERIQQPVDDP
                     RYVVLQLDFDSAQQATAFRGFLETQVWSTPANSPGLAGSPRAVVLVEPADDSEN"
BASE COUNT          458 a         1211 c         1162 g          559 t
ORIGIN      
        1 ctcattcccg cgctgtgtgt cgtgggagcc cgccgtcttc tgcggcgtgg cacggagatc
       61 ccacccgagg agggggtctt ctcacgcctc gcgcaatggg tccaccggca cccggtcccg
      121 atcatcgtcg tcgtcctggt ggccctgctc ggcctggcca tgccggccct cgacctgcgg
      181 ctgacctcgt cggggaccgg cctgctgccg acgagctcct cgacccggac gttcttcgac
      241 gggctcgcca ccgactaccc acgcctcggg gcaccggacg tcaccgtcgt ggccaaggcc
      301 tccctggacc agacgaaggc gtatgccgcc ggcctgcgtc ttccaagcgg cgtggctgtc
      361 accggggtgg cctcggttgg cagcgggctg agcgtcgtgc gcctcgacgc tcctggtggc
      421 ccgctcgacg accctgcccg tgcgctcgtg cgtcagctca agaccgaacg cccacggttc
      481 acgacctacg tcaccgggtc cgcctccggg ctccaggact tcatcgactc gatgtggcag
      541 cgagcgccct atgcgttcgc gctggtggct ctcgccacgc tgatcctgtt gttcctcatg
      601 acggggtcgg tggtgatccc ggtcaaggcg ctgctgctca acgtcgtctc gctcggcgcc
      661 tccctggggg tcagcgtgtg ggtgttccag cagggccatc tgcaaggact gctggacttc
      721 tcctccgtgg gtgcggtgga gtccacgatt ccactgctgg tgctctcgtt cggcttcgga
      781 ctctcgatgg actatgaggt cttcctgctg tctcgcatcg tcgagctgca cgaacagggc
      841 cacgacaacg acgaggcggt ggtgctcggc ctgcagcgtt cggggcgcat catcacctca
      901 gcggctctgc tggtcgtcat cgtgttcagc ggtttcgtcg ccgggcagct gctggccatc
      961 aaggagacgg gtgtcggcct ggccaccgcc gtggccctcg atgcgacgct ggtccggatg
     1021 ctgctcgtcc ctgccaccat gaccctgctc ggcgactgga actggtgggc gccagcgggg
     1081 ttgcggcgct ggcactcgcg attcgggatc accgagtgac cctggaacac ctgacctcac
     1141 acgccgagat cctcgaccac tcggcggatg atgcgttcgt ccggtacgac ctgccgacgg
     1201 cgctcgagca gcctgggtgg ggttacggcg acgccctggc agtgccccgc ctcagccagc
     1261 tgcgtcgcct cgggctgctc gtcatgggcc cggtcaccga ggtcgaccac ctcgtgggcg
     1321 agctcgtcgc gagggacctg ctgccccacg acgtcggcag cgtcacggtc gcggcgccag
     1381 cccttcccgg ggtcgcggcc cacctcgacg tcgccgacgg caacgactgg gagtggatgt
     1441 atgccgcggc cgagccttcg gcggtcgctg cggaggatcg gctcgtgagc ctgtccgaga
     1501 ccgacctgcc ggacctccaa ggtctactgg agcgcgccaa cccacgcacg gatgcgcggc
     1561 ccttcgagtc cccggaccag acgtgggtcg gtgttcgtga tgcggtcggg cggctggtgg
     1621 cttgcggcgt ccgcgaaccc aaccacgccg gctatccgat cctctcgggc atcacggttg
     1681 acccggcgca gcgaggcacc gggctgggag tggcggtcac ggcatacctc acccggcagg
     1741 cggtcgccga ggtcggggtg tgcaccctgg ggatgtactc cgacaacgac gtcgcccggc
     1801 gcgtctacac cgggctcggg tacggggaca tccaccgctg gtcgagccga cggctggcgc
     1861 gcgccgtctc gtctgcctag attcgacaac ctccgcagca ggaccagcaa cggcagcagc
     1921 aacggcagcc gttgcgcgcc cctgcggttg ggagcaggct ggccaggtga ccatcgacct
     1981 gtctgcccag tggcgagccg gcctggcgga actgcggtac gcgagcacgc cgaaacggct
     2041 gctcgccacc ctcgatggcg aaccggcgct cgacacgacg gacgcgctgc tcgtgtggga
     2101 gccccgccgg gtcgtgccgc actacgcggt cccggcgcgg gacctgcgga tcggcctcga
     2161 ggagctcgcc tcggcgccac cgcctcccga cctgccgccg gtcatgggtc cgcagcactt
     2221 ctccctgcat acctgcgccg gcaccgcgct agcgcccacg tcgggtgcct gcgccggggt
     2281 ggaggtgggg ttccggccgg acgacccggc gctcggaggc cggatcatcc tcgacttcgc
     2341 gcggttcgag tggaccgagg agaacgagcc ggtcatgggt cacgcccacg accccttcaa
     2401 gcggatcgac gtcctgcgca gcgaccggca tgtcgtggtg cggctcggcg acaccgtgct
     2461 ggccgactcc cgtcgcgccc atgcgctgta cgagacgtcg ttgccggtgc ggtggtacct
     2521 gcccagagag gacgtgcgca tggacctgct gacgccgtca cagacccact ccgtctgcgc
     2581 ttacaagggt agggcgagct acctcagcgc cgagctggag ggtggcgcag acatcggatg
     2641 gttctatcct gacccgctcc acgacgcgct gcgggtgcgt gacctcgtgg ctttctggtc
     2701 tgagcggacc gacctgaccg ttgacggggt ccgcgtgaaa ggacgtatgc cgggtgcggc
     2761 agcgggcggg ccacaggaca gggctgcggg gggcgcgccg tgaccgagcc cgatccggcc
     2821 gcgaccaacc ccggcctcta cacggtcgtc ttcgagaacg acgaggtgcg cgtcctggag
     2881 taccgcgaca agccgggcga ccgcaccacg ccgcacgccc atcccgacag cgtcatgtac
     2941 tcgctgacgc cattccgtcg ccggctgcgc tcggcaggcc tcgagcgcga cgtcgagctc
     3001 gggccgcacg gcgtctgact cgacctagtt ctcgctatcg tccgccggtt ccaccagcac
     3061 caccgcacga gggcttcccg cgagccccgg cgagttcgcc ggggtcgacc acacctgcgt
     3121 ctcgaggaac ccccggaagg ccgtggcctg ctgcgccgag tcgaagtcga gctgcaggac
     3181 cacgtaccgc ggatcgtcaa ccggctgctg gatgcgctcc gccagcacac ctgcggcggc
     3241 cctccgatca gcgaaccggt cgaaagccgt cttccaggtg cggtagtccg tgatcgcgtg
     3301 ctcgatgtgc agggtcgcca tgggcccgag tgtcctcgcg ccggcatcct gacaccaggg
     3361 ttgctgcggt caggcctgcg tggcgacctc
//
LOCUS       DASYFY010000117         3390 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_113526, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000117 DASYFY010000000
VERSION     DASYFY010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113526"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..2192
                     /locus_tag="VGN19_02220"
     CDS             231..2192
                     /locus_tag="VGN19_02220"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HEV7194730.1"
                     /translation="MRSGILPGHRDDTVRPQDDLFGHANGTWVRETEIPPDRGRYGTF
                     DMLREQSDERVRGLIESAASDLDAEPGSLPRKVGDLYRSFMDEAKAESAGRAPIEDDL
                     AAVAAVADPASLFELMGRLQRRGISGVLEMGVAPDAKSPEDYILYLSQAGLGMPDESY
                     YREERHESVRAAYLPHVARMLELGGIGAGAVDEGSPAARVVALETRLAAHHWDNVATR
                     DAVKSYNPVDWAGLESAAPGVRWVSYVQGLGADKAFEQVVVGQPEFLTGLSDALLEVP
                     LDDWKAWLAFHLVESTAPLLSSAFVDAEFDFSGRVISGLPANRERWKRGVSLVEGAIG
                     EAVGQLYAERYFPPHAKDRMLELVGNLVEAFRRSFEQLDWMGEQTREQALAKLDSFTP
                     KIGYPDRWRDYSALTIDDDLVGNVWRASEFEFERQLNKLGGPIDRDEWMMLPQTVNAY
                     YHPLLNEIVFPAGILQPPFFDLDADDAVNYGAIGAVIGHEVGHGFDDQGSRYDAHGAL
                     RDWWTEGDRERFDERTQALIAQFNQLSPLAAPDDRVNGALTVGENIGDLGGLAIGFAA
                     YRIARRGEEVPELDGYTGEQRFFLGWAQVWCGKARPEEARRLLAVDPHAPTEVRANAA
                     RNCDEFHEAFGVREGDGMWLAPDERVHIF"
     gene            complement(2482..3312)
                     /gene="tsf"
                     /locus_tag="VGN19_02225"
     CDS             complement(2482..3312)
                     /gene="tsf"
                     /locus_tag="VGN19_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HEV7194731.1"
                     /translation="MANYTAVDIKALRESTGAGMLDVKKALDEADGDRSKATEILRVK
                     GLKGVTKREGRTTSNGLVTARAGDSVGTLVEVLCETDFVAKSEKFITLADQVLTQAVA
                     TGAADADALLKSTLEDGRTVQELLDDANATIGEKIEVKRVARIEAPLVVSYLHKTSPD
                     LPAQIGVLVGAEGGDEQIARDVAMHIAAFAPSVLTRAEVDAETVENERRVAEATAKEE
                     GKPEAALPKIVEGRVNGFFKENVLLEQPFAKDAKKTVAKVLEEAGANATSFARYRVGG
                     "
BASE COUNT          514 a         1129 c         1188 g          559 t
ORIGIN      
        1 gggggcagcg gtcacgaggg atcctcctgc tggggcctgg ggggcggtca cccgatcctt
       61 ccacactcgt gcgccagcgc atgccgggtc atggcgactg gggcggaggg ccctctgtca
      121 acccgcgtca gcccggttcc gcccgatgcc aacccggcgt caacccggtg tcagcccggt
      181 gtcagccgcg catggcaggg ttacctgcac cccagcgaag gagacacacg atgaggtctg
      241 gaattctccc cggtcaccgc gacgacaccg tgcgccccca ggacgacctg ttcggtcacg
      301 cgaatggcac ctgggtccgg gagaccgaga ttcccccgga ccgcggacgc tacgggacct
      361 tcgacatgct gcgcgagcag tccgacgagc gggtgcgggg actcatcgag agcgctgcct
      421 cggatctgga tgctgaacct gggtccctgc cacgcaaggt gggcgacctc tatcggtcat
      481 tcatggacga ggccaaggcc gagtctgcgg gccgcgcgcc catcgaggac gacctggccg
      541 cggtggccgc ggtcgcggat ccagccagcc tgttcgagct gatgggcagg ctccaacggc
      601 gaggcatctc cggcgttctc gagatgggcg tcgctccgga cgccaagtcc ccggaggact
      661 acatcctcta cctgagccag gcgggcttgg ggatgccgga cgagtcctac taccgcgagg
      721 agcggcacga gagcgtccgc gcggcatacc tgccgcatgt ggctcggatg ctcgagcttg
      781 gcggcatcgg agccggtgcg gtcgatgagg gctcccccgc tgctcgcgtc gtggcgctcg
      841 agacccgcct cgccgctcac cactgggaca acgttgccac ccgggacgcg gtcaagagct
      901 acaacccggt cgactgggcg gggcttgagt cggcggcgcc cggcgtgcgg tgggtcagct
      961 atgtccaggg gctcggcgcg gacaaggcgt tcgaacaggt cgtcgtgggg cagccggagt
     1021 tcctcaccgg gttgtccgac gcgctgctcg aggtgccgct ggacgactgg aaggcctggc
     1081 tcgcctttca cctcgtggag tccaccgctc cgctgctcag ctctgcgttc gtcgacgcag
     1141 agttcgactt ctccgggcgg gtgatctcag gacttcccgc gaaccgtgaa cgctggaagc
     1201 gtggcgtgtc cctggtggag ggcgccatcg gtgaggcggt cggccagctc tatgccgagc
     1261 gctacttccc gccgcacgcc aaggatcgga tgctggagct ggtcggcaac ttggtcgagg
     1321 cgttccggag gtcgttcgag cagctcgact ggatgggcga gcagacccgc gagcaggcgc
     1381 ttgccaagct ggactcgttc acgcccaaga tcggctaccc ggaccggtgg cgcgactact
     1441 ccgcgctgac tatcgacgac gacctggtcg gcaatgtgtg gcgggccagc gagttcgagt
     1501 tcgagcggca gctcaacaag ctcggcggcc cgatcgaccg cgacgagtgg atgatgctcc
     1561 cgcagacggt gaacgcgtac tatcacccgc tgctcaacga gatcgtcttt cccgcgggca
     1621 tcctgcagcc accgttcttc gacctcgacg ccgacgacgc ggtgaactac ggggccatcg
     1681 gtgccgtgat cggccatgag gtcggccacg ggttcgacga ccaggggtcc cgctacgacg
     1741 cccacggcgc cctgcgcgac tggtggacgg agggggaccg tgagcgtttc gacgaacgca
     1801 cccaggcgct gatcgcccag ttcaaccagc tgtctcccct cgcggcaccg gacgaccgcg
     1861 tcaacggcgc cctcaccgtc ggcgagaaca tcggcgacct gggcggcctg gccatcggct
     1921 tcgcggcata ccggatcgcg aggcgaggag aagaggtccc tgagctcgac ggttacaccg
     1981 gggaacagcg cttcttcctg gggtgggcgc aggtgtggtg cggcaaggcg cgtccggagg
     2041 aggcgcgacg cctgctcgcc gtcgacccgc atgctccgac cgaggtcaga gcgaatgccg
     2101 cccgcaactg cgacgagttc catgaggcgt tcggcgtccg cgagggcgac ggcatgtggc
     2161 tggctccgga tgagcgtgtt cacatcttct agctcgaggg acgccggtct tgacccggga
     2221 agcgcatcga ccacctgagc ctggagcgag agatccctga gccgggagtc cttcggcacc
     2281 gcgatccgtg agctggcgac cgacgatgtg gcggacaccg gccacatcct gcgcagggtt
     2341 cagcagttcc gtgaaggcaa ggtcaccgag gtgagtgagc gggcggccgt cgccatctga
     2401 ggcggccggc agaggtcgag ggccaatacg caggaagccc gccccccgaa ggggacgggc
     2461 ctcgcagact gcgtggtggg gtcagccgcc gacgcggtag cgcgcgaacg aggtggcatt
     2521 ggcgccagcc tcttcgagca ccttggcgac ggtcttcttg gcgtccttgg cgaacggctg
     2581 ctcgagcagg acgttctcct tgaagaagcc gttgacgcga ccctcgacga tcttcgggag
     2641 ggcagcctct ggcttgccct cctccttggc cgtggcctcc gcgacgcgtc gctcgttctc
     2701 cacggtctcg gcgtcgacct cggcgcgggt cagcaccgac ggcgcgaagg ccgcgatgtg
     2761 catagccacg tcgcgagcga tctgctcgtc gccaccctcg gcacccacca gcacaccgat
     2821 ctgcgcaggc aggtcggggc tggtcttgtg caggtacgac accacgaggg gggcctcgat
     2881 gcgggccacc cgcttgacct cgatcttctc gccgatggtc gcgttggcgt cgtcgagcag
     2941 ctcctgaacg gtccgaccgt cctcgagggt gctcttgagc agcgcgtcgg cgtcggccgc
     3001 accggtggcg acggcctggg tcagcacctg gtcggcgagg gtgatgaact tctcgctctt
     3061 cgcgacgaag tccgtctcgc acagaacctc gaccaaggtg ccgacactgt cgccggcccg
     3121 tgcggtgacc agaccattgg acgtggtccg accctcgcgc ttggtcacgc ccttgaggcc
     3181 cttgacgcgc aggatctcgg tggccttcga gcggtcgccg tcagcctcgt cgagcgcctt
     3241 cttgacgtcc agcatgccgg cgccagtgga ctcgcgcagg gccttgatgt caacggcggt
     3301 gtagttcgcc atgaatatct ctcagctctt tctctggtgt cgggtgctca ggcgttggcg
     3361 tcagcgtcgg cggcggtcgc agcctcgggg
//
LOCUS       DASYFY010000118         3416 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_638934, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000118 DASYFY010000000
VERSION     DASYFY010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_638934"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1397
                     /locus_tag="VGN19_02230"
     CDS             <1..1397
                     /locus_tag="VGN19_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7194732.1"
                     /translation="AVTSIPVLTYFVVINSSYLVLISLAALEFRSQERRRAASVAALG
                     GPLTPGVSLVVPAYNEEVGIVTSIKSMLSLRYPQHEVVVVNDGSTDETLSRLVASFDL
                     VRIPRAVPRDVPVNAAVGDVYVPRDGRTRLVVVCKENSGRSEAINVGINAAAEPLVAV
                     IDADSVLEPDALLRVTQPFTDDPTRMVAAGGTIRAVNGSRVVSGRIVGVRMPGSWLPR
                     VQVVEYLRAFLIGRTGWARFGGLILISGAFGLFRRDILVEVGGLDPDSIGEDLELMLH
                     IHKHLLDSDRDYRVAFVAEPVCWTEVPSTFRVLRSQRSRWHRGLWETLWAYRGMVLRP
                     RYGRVGMVALPYYWLFELLAPLLEAFGIVVVPLALLLGVVNLPFAILFLLLAYGFAIL
                     VTLSALAVEEWAYHRHDRWRDLALIVVASVVENLGYRQLTVFWRLQGWWASLRNRKQV
                     WGVMTRTGFDEASP"
     gene            1394..>3416
                     /locus_tag="VGN19_02235"
     CDS             1394..>3416
                     /locus_tag="VGN19_02235"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7194733.1"
                     /translation="MTPLADRSVSTQLKVFGIALLLLVPGVGIAAVSTLVSQGHAIQA
                     LTLALGPAFDANNAALIDMTAANASWSQLMGGSTPLTDFRTKRPQVESELTLLRTAVA
                     LPTLSSDDHLRFSPLISQQRAAVDAWFTAALQAQNLKDGSLSAKSAATAQAITRFRVF
                     SDANRDLSEQIRVERDEARKGSRVSLELVIAVVAVSSLLAMGIVVSGWRLLERSVSGP
                     LERLRLVLERQRDGDRLAQAQTTTGAVEVRQLASDFNGLTKANQVLQDQQSLVLLSQQ
                     LVIDVARAVQTAQGIEQAMHVACAMLGEGLGGDRVLLYIHDEDGQAKERAQWRRYDLP
                     SLPPLPPSLAQEVRVVTDELRREVSVFAASDFLAPEVQAEDRAQRFYRATGARSLLLL
                     PVGVGDQGLGVLALMMVDAPRRWRRYEIHAAQECAGYLAQSIVSLRLRQMQELQVQRL
                     QDLDRQKTDFMATVSHELRTPLTSISGYLELLEDGDYGALTTQQRSALSIVDRNTTRL
                     RGLIEDLLVLNKIEATGLRSEVEDVRVADLVSGVVEMLRPVAEEGRVQLSTPEIDPSL
                     VVRVDRSQLERSLINLGSNAVKFTPSGGRASLAAHAEDDRVVIEVSDTGIGIPAKDQE
                     RLFDRFFRASNATDAAIPGTGLGLAIVRAIVEGHGGDLSVESVEGTGTTM"
BASE COUNT          488 a         1181 c         1183 g          564 t
ORIGIN      
        1 tggcggtcac ctccatcccg gtgctgacct acttcgtggt gatcaactcc tcgtacttgg
       61 tcctgatcag cttggccgcg ctggagtttc gctcccagga gcgccgccgc gccgcgtccg
      121 tcgccgcgct gggcggcccc ctgacgcctg gtgtctcgct ggtggtgccg gcctacaacg
      181 aggaggtcgg catcgtcacg tcgatcaagt cgatgctgtc gctgcgctat ccgcagcacg
      241 aggtggtcgt cgtgaacgac ggcagcacgg acgagaccct gtcgcgactc gtggcgtcct
      301 tcgacctcgt gaggatcccg agagcggtgc cgcgagacgt cccggtcaac gcggccgtcg
      361 gagacgtcta cgtgccacga gacgggcgaa cgcgactggt ggtggtctgc aaggagaact
      421 cgggccgctc ggaggcgatc aacgtcggca tcaacgcggc ggccgagcct ctggtggccg
      481 tgatcgacgc cgactcggtc ctcgagccgg acgcgctgct ccgggtgacc cagcccttca
      541 ccgacgaccc gacccggatg gtcgccgccg gcggcacgat ccgcgcggtc aacggcagcc
      601 gcgtcgtgtc cggtcgcatc gtcggcgtgc gtatgccggg aagctggctg cccagggttc
      661 aggtggtcga gtacctgcgc gccttcctga tcggtcggac cggctgggcc cggttcggtg
      721 gactcatcct catcagcggc gcgttcgggc tgttccgtcg cgacatcctc gtcgaggtcg
      781 gcggtctgga cccggacagc atcggcgagg acctcgagct gatgctgcac atccacaagc
      841 acctgctcga cagtgaccgt gactatcggg tggccttcgt ggccgaaccc gtctgctgga
      901 ccgaggtgcc ctcgaccttc cgggtgctgc gcagccagcg cagtcgctgg catcgcggcc
      961 tgtgggagac gctgtgggcc taccgcggca tggtgctgcg accgcggtac ggccgggtcg
     1021 gcatggtcgc gttgccgtac tactggctgt tcgagctgct cgcgccgctg ctcgaggcct
     1081 tcggcatcgt cgtcgtcccg ctcgcgttgc tgctcggcgt cgtcaacctg ccgttcgcca
     1141 tcctcttcct cctgctggcc tacggcttcg ccatcctcgt gaccctctcg gccctggccg
     1201 tcgaggaatg ggcctatcac cggcacgacc gctggcgaga cctggcgctg atcgtggtcg
     1261 cctcggtggt ggagaacctc ggctaccggc agctgacggt gttctggcgg ctgcaaggct
     1321 ggtgggccag cctgcgcaac aggaagcagg tctggggagt catgactcgc accggcttcg
     1381 acgaggccag cccgtgacgc ctctggccga ccgatcggtg tccacccagc tgaaggtgtt
     1441 cgggatcgcg ctcctcctgc tcgttcccgg ggtcggcatc gctgccgtct cgacgctggt
     1501 ctcgcagggc cacgccatcc aggcgctgac cctggccctc gggccggcct tcgacgccaa
     1561 caatgccgcc ctgatcgaca tgaccgcggc gaacgcctca tggagccagc tcatgggcgg
     1621 ctcgacgccg ctgacggatt tccgcacgaa gcggccacag gtggagtccg agctgacact
     1681 tctgcggact gccgtcgcct tgccgaccct ctcgagcgac gaccatctgc ggttcagccc
     1741 gctgatctcc cagcagcgcg ctgctgtcga cgcctggttc accgccgcgc tccaggccca
     1801 gaacctcaag gacggttcgc tcagcgcaaa gagcgccgcc acggcgcagg ccatcaccag
     1861 gttccgggtg ttctccgacg ccaaccggga cctcagcgag cagatccgcg tcgagcgcga
     1921 cgaggcgcgc aaggggtcga gggtttccct cgagctggtg atcgcggtcg ttgcggtgtc
     1981 cagcctgctg gccatgggca tcgtggtgtc cgggtggcga ctgttggagc gctccgtcag
     2041 cggccccttg gaacgcctgc ggctggtgct cgagcgccag cgcgacgggg accggctggc
     2101 acaggcacag accaccacgg gagccgtcga ggtgcggcag ctcgcgtccg acttcaacgg
     2161 tctcacgaaa gcgaaccagg tcctccagga ccagcagagc ctggtgctgc tgtcccagca
     2221 gctcgtgatc gacgtcgcgc gagccgtcca gaccgcccag ggcatcgagc aggcgatgca
     2281 cgtcgcctgc gccatgctcg gcgaaggact cggcggcgac cgcgtgctgc tctacatcca
     2341 cgacgaagac ggacaggcca aggagcgcgc gcagtggcgg cggtacgacc tgccctccct
     2401 gccaccgctg ccaccctcgc tggctcagga ggtacgggtc gtgaccgacg agctgcgccg
     2461 ggaggtgtcg gtcttcgcgg cctcggactt cctggccccc gaggttcagg cggaggaccg
     2521 ggcgcagcgc ttctaccggg cgacgggcgc tcgaagcctg ctgctgctgc cggtcggggt
     2581 cggggaccag gggctcggtg tcctggcgct gatgatggtc gacgcacccc gtcggtggcg
     2641 gcgctacgag atccacgccg cgcaggagtg cgctggttac ctggcccagt cgatcgtctc
     2701 cctgcggctg cgtcagatgc aggagctgca ggtgcagcgg ctgcaagacc tcgaccgcca
     2761 gaagacggac ttcatggcga cggtgtcgca cgagctgcgc acgcccctca cctcgatcag
     2821 cggctacctc gagctgctgg aggacgggga ctacggcgcc ctgacgaccc agcagcgctc
     2881 ggctctgtcg atcgtcgacc gcaacacgac caggctgcgc ggcctgatcg aggacctcct
     2941 ggtgctgaac aagatcgaag ccaccgggct gcgctcggag gtcgaggacg tccgcgtcgc
     3001 cgacctcgtg tcgggcgtgg tggagatgct gcgtcctgtg gccgaggaag gccgcgtcca
     3061 gctgagcact cccgagatcg accccagtct ggtcgttcgg gtcgaccgca gccagctcga
     3121 gcggtcgctg atcaacctgg gctccaacgc cgtgaagttc accccctcgg gcgggcgggc
     3181 gagcctggca gcgcacgctg aggacgaccg ggtggtcatc gaggtgtcgg acacgggcat
     3241 cggcatcccc gccaaggacc aggaacggct gttcgaccgc ttcttccgcg ccagcaacgc
     3301 cacggacgcc gcgatcccgg gcaccggtct gggtctggcc atcgtgcggg ccatcgtcga
     3361 ggggcatggc ggcgacctgt ccgtcgagtc ggtcgagggc accgggacga cgatgc
//
LOCUS       DASYFY010000119         4863 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_166377, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000119 DASYFY010000000
VERSION     DASYFY010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4863
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166377"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VGN19_02240"
     CDS             <1..255
                     /locus_tag="VGN19_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEV7194734.1"
                     /translation="PLLFRVPPIVVEMWATRIAGAGFDLAYEVRDGRDGQDDTVYARA
                     ETSLVLYDFETSKPRRMDDALRSVLGIHSGEPVPFRWRRR"
     gene            240..893
                     /locus_tag="VGN19_02245"
     CDS             240..893
                     /locus_tag="VGN19_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194735.1"
                     /translation="MASTLMDLHFPDDQGVEDLRTFVSRARAADGEGAVRLQAAGATL
                     AAYVGVLPGGGLLAEGAVLGLRVMPLAEPATVDVTVSLAAVADRLAREVGTVLSLPPM
                     LVSAPWSAVAPPRSGWERVGALACEVLEECARQGIEEIARGVPADAGGHAVTALRRQV
                     WGRLTPTTPPVPSGGAFAAYVLGFTEPGTDATVWAHGRWTRVSAPHGHVLVRGAATI"
     gene            complement(924..2360)
                     /locus_tag="VGN19_02250"
     CDS             complement(924..2360)
                     /locus_tag="VGN19_02250"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194736.1"
                     /translation="MTARTPDRRTGLASPPEGAFHPAYALVSVALVALITVIAFEGMA
                     VSTAMPAAARDLAAVRSYGLTFSVMLTTQLLGIVVAGVWCDRSGPLPSLYAGQVLFAV
                     GCGICGSATSFGTFLSGRAVAGLGGGLIVVAAYVLIGRAYPASLRPKVFSVISAAWVL
                     PSLLGPPVAAWVTSTWSWRWVFWMVVVPVAVAFVLVAARRHQIAGMNETVEPVEGSGR
                     EQAAGSAHVRAAWYGLLIAASAGALQWGTQDLRPGWSPRVLAAGVGLLGLAATAPALL
                     PRGTWLMRRGLPSVMVARFLFTSSFFGTITYVPLMLVDERGLSLGAAGAILAVGSLGW
                     STGSWIQGRDRWAGRRDRLVSVGGALLSGGLLTLVAIAHFEWNPYLSALALAACGTGM
                     GLGTASLSVLSLLLTPASEHGSTSSSLQLADVLGSVLGIAAAGAVFAALHTSAGHDLP
                     VYVRMWLGLAAVAALAILAGRRIGDSAS"
     gene            complement(2357..3151)
                     /locus_tag="VGN19_02255"
     CDS             complement(2357..3151)
                     /locus_tag="VGN19_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HEV7194737.1"
                     /translation="MGAADFAYLDARRPIGLAHRGGAKLAANVGLENSLAAFRGAVEL
                     GYRYLETDVHATADGVVLAIHDSSLERVSTGEGRVEDLSYAAVRQARINGTEEIPRLS
                     DLLEEFPEARFNIDVKAASALEPLAAVIRSHAALRRVCVGSFSDRRLRVMRRLLGPEL
                     ATAAGPSEVAALKFAPRMVAAWLRSPAPVLQIPTGHVIGGRRLDLVTPGLVQRAHLSD
                     KHLHVWTIDDAQEMHRLFDLGVDGIVSDRIDTLAGVLAERGVPLGR"
     gene            complement(3184..>4863)
                     /locus_tag="VGN19_02260"
     CDS             complement(3184..>4863)
                     /locus_tag="VGN19_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 13 protein"
                     /protein_id="HEV7194738.1"
                     /translation="ADSHDASWWRHAVIYQIYPRSWADADGDGIGDLPGVTARLGYLK
                     ALGVDAVWFSPFYKSPQADAGYDVADYRAIDPLFGTLQDADAMVAKAHELGLKVIVDL
                     VPNHSSDEHEWFTAALSAAPGSPERDRYIFRDGRGTDGAEGTEPPNDWHSVFGGDGWT
                     RITEADGTPGQWYLHLFDSKQPDFNWDNPQVRAEFEAILKFWLDRGIDGFRVDVAHGL
                     VKEPGLPDYDAELHILDGEVKPGAPKPPMWDQDAVHEVYRTWRKILDSYGQPERILVA
                     EAWVRPQERAVRYVRPDEMHQAFNFDFLQTQWRAKDLREVIEESLAAADSVGAPSTWV
                     LSNHDVVRHASRLGLPVGQRRPNGISAKDPQPDRELGLGRARAATALMLALPGGAYVY
                     QGEELGLPDSTDMPAEFRQDPTFLRSAGKEIGRDGCRVPIPWTKDAPSFGFGPTDATW
                     LPQPSIYGDYAVDQQDGVTGSTLELYRQLLRLRRQRLLGVGALRFAEGFDKDVVALVN
                     SAPGDQGATLIVTNLGTDPVTLPAGASVLVASGPLTADLAVPTDTTVWASL"
BASE COUNT          741 a         1685 c         1786 g          651 t
ORIGIN      
        1 ccgctgctgt tccgggtccc tccgatcgtc gtggagatgt gggccacccg gatcgccggg
       61 gccggtttcg acctggccta cgaggttcga gatggtcggg acgggcagga cgacacggtc
      121 tacgcgcgtg ccgagacgag cctggtgctc tatgacttcg agaccagcaa gccccgtcgg
      181 atggacgacg cgctccggtc cgtgctcggc atccatagcg gcgagcccgt gccgtttcgg
      241 tggcgtcgac gctgatggac cttcatttcc cagacgacca gggcgtcgag gacctgcgca
      301 cgttcgtgag ccgggcccgg gcggctgacg gcgagggcgc ggtgcggctg caggcggccg
      361 gcgccaccct ggcggcctat gtcggtgtac tgccaggcgg cggcctgctc gccgaaggcg
      421 ctgtcctcgg gctgcgtgtc atgccgctgg ccgagcccgc gacggtcgac gtgacggtgt
      481 cgctggctgc ggtcgcggac cggttggcgc gtgaggtcgg cacggtgctg agcctgcctc
      541 ctatgctggt ctcggccccc tggtccgcag tggcgccgcc gcggtccggg tgggagcgcg
      601 tcggcgcgct ggcgtgtgag gtgctcgagg agtgcgcccg ccaggggatc gaggagatcg
      661 ctcgcggcgt cccggccgat gcggggggcc acgcggtcac cgccctgcgc cgtcaggtct
      721 gggggcgcct gacgccgaca acgccgccag tgccctcggg gggcgccttc gcggcatacg
      781 tgctggggtt caccgagcca ggcactgacg cgaccgtgtg ggcgcacggc cgatggactc
      841 gcgtgtcggc cccgcatggc cacgtgctcg tccggggcgc cgcaacgatc tgacgaaccg
      901 gcgccgtagc gcacccacgc agctcaggag gcggagtcgc cgatccgacg accggcgagg
      961 atggcgagcg cggctacggc cgccagaccc agccacatcc gcacgtagac ggggaggtcg
     1021 tggccggcgc tggtgtgcag cgcggcgaac accgctccgg cggcggcgat cccgagcacc
     1081 gacccgagga catcggccag ctggagcgag gacgacgtcg aaccgtgctc cgaggcgggc
     1141 gtcagcagca gcgacagcac ggacaggctt gccgtcccca gtcccatgcc ggtcccgcac
     1201 gctgccaggg cgagtgcgct cagatacggg ttccattcga agtgcgcgat ggccaccagc
     1261 gtcagcagac cgccactgag cagggccccg ccgaccgaca cgagccggtc ccggcgtccg
     1321 gcccagcggt cccgaccctg gatccaggat ccagtcgacc acccgagcga gcccactgcg
     1381 aggatcgccc ccgcagcgcc cagcgacagc ccccgctcgt cgaccagcat cagcggaacg
     1441 taggtgatgg tgccgaagaa cgacgaggtg aacaggaacc gcgcgaccat caccgagggc
     1501 aggccccgcc gcatgagcca ggtgcctcgg ggaagcaggg cgggggccgt cgcggccagt
     1561 cccagcagcc cgacgccagc ggcgagaacg cgcggcgacc aaccaggtcg caggtcctgg
     1621 gtgccccact gcagcgcgcc cgcagacgcg gcgatgagca ggccgtacca ggcggcccgc
     1681 acgtgcgcgc tgcctgctgc ttgctcccgg cccgacccct cgacgggctc gacggtctcg
     1741 ttcattcccg cgatctggtg ccggcgggcg gccaccagga cgaaggccac cgctaccggc
     1801 accacgacca tccagaacac ccaacgccat gaccaggtcg aggtgaccca cgccgccacc
     1861 ggaggaccca gcagcgaagg cagtacccag gccgccgaga tgacgctgaa aaccttcggg
     1921 cgcaacgatg ccgggtacgc acggccgatg agcacgtagg ccgcgacgac gatcagccct
     1981 ccgcccaggc cggccacggc ccggccgctg aggaacgtcc cgaacgaggt ggcgctcccg
     2041 cagatcccgc agccgaccgc gaacaggacc tgaccggcat agagcgaggg cagcggcccg
     2101 gaccggtcgc accacactcc ggccaccacg attcccagca gctgcgtggt gagcatcacc
     2161 gagaaggtga gtccatagga ccggaccgcc gccaggtcgc gagccgcggc gggcatcgcc
     2221 gtggagacgg ccatgccctc gaacgcgatg accgtgatga gagcgaccag cgccaccgac
     2281 accagggcgt atgccgggtg gaaggcccct tccggtgggg atgcgagccc ggtgcgccgg
     2341 tccggggtgc gcgcagtcat cggcccaacg gtacgccgcg ctcggccagc accccggcca
     2401 gcgtgtcgat ccggtcggag acgatgccgt ccaccccgag gtcgaagagc cggtgcatct
     2461 cctgggcgtc gtcgatcgtc cacacgtgca gatgcttgtc cgacaggtgg gcacgttgga
     2521 ccagcccggg cgtcaccagg tccagacgcc ggccaccgat gacgtgcccg gtaggaatct
     2581 gcagcaccgg cgcgggggag cgcagccacg ccgccaccat ccggggagcg aacttgagcg
     2641 cggcgacctc cgacggaccg gcggcggtgg cgagctctgg tccgagcagt ctgcgcatga
     2701 cgcgcagccg acggtcggag aaggagccga cacagacccg ccggagggcc gcgtggctgc
     2761 ggatcacggc cgccagcggc tcgagggccg acgcggcctt gacatcgatg ttgaaccggg
     2821 cctctgggaa ctcctcgagc aggtccgaca gtcggggaat ctcctcggtg ccgttgatcc
     2881 gcgcctggcg caccgcggca tacgagaggt cctcgactcg tccctcgccg gtgctgaccc
     2941 gctccagcga cgagtcgtgg atggccagca cgacgccgtc ggccgtggcg tgcacatcgg
     3001 tctcgaggta gcgatagccc agctccacgg ctccccggaa ggctgcgagc gagttctcga
     3061 ggccgacgtt cgcggcgagc ttggcgccgc cccgatgcgc caggccgatg ggtctgcgcg
     3121 cgtcgagata ggcgaagtcg gcggctccca cggggtcagt ctgccgtggg agccgccgat
     3181 cggtcagagc gaggcccaga cggtggtgtc cgtgggcacg gcgaggtccg cggtcagcgg
     3241 cccggaggcg accagaaccg aagccccggc cggcagggtc accgggtcgg tgccgaggtt
     3301 ggtgacgatc agggtggccc cctggtcgcc gggagcggag ttcaccaggg cgacgacgtc
     3361 cttgtcgaag ccctcggcga accggagcgc accgaccccg agcagccgtt ggcgacgcag
     3421 ccgaagcagc tggcggtaga gctcgagcgt ggagcccgtg acaccgtcct gctggtccac
     3481 ggcgtagtcc ccgtagatcg agggctgtgg cagccaggtg gcgtcggtgg ggccgaaccc
     3541 gaaggaggga gcatccttgg tccacgggat cggcacgcgg cacccgtccc tgccgatctc
     3601 cttgccggcg ctgcgcagga acgtcgggtc ctggcggaac tcggcaggca tgtcggtcga
     3661 gtcgggcaac ccgagctcct cgccctggta gacgtaggcg cctccgggaa gggccaacat
     3721 cagcgccgtc gccgcccggg cacgccccag gcccagctcg cggtcaggct ggggatcctt
     3781 ggcgctgatg ccgttcgggc ggcgctgacc gacgggcaga cccagccggg aggcgtgccg
     3841 gacgacgtcg tggttggaca gcacccaggt gctgggggcg ccgacgctgt cggccgcggc
     3901 cagcgactcc tcgatgacct cgcgcaggtc cttggcccgc cattgggtct gcaggaagtc
     3961 gaagttgaag gcctggtgca tctcgtcggg acgcacgtac cgcacggcgc gctcctgcgg
     4021 gcgcacccag gcctcggcca cgaggatccg ttcgggctgg ccatagctgt cgaggatctt
     4081 gcgccaggtc cggtagacct cgtggaccgc gtcctggtcc cacatcggtg gcttgggtgc
     4141 accgggcttc acctcgccgt cgaggatgtg cagctcggcg tcgtagtcgg gcagtccggg
     4201 ctccttgacc aggccgtggg cgacgtcgac ccggaagccg tcgatgccgc ggtccagcca
     4261 gaacttcagg atcgcctcga actcggcgcg cacctgcggg ttgtcccagt tgaagtcggg
     4321 ctgcttgctg tcgaacaggt gcaggtacca ctggcccggc gtgccgtcgg cctcggtgat
     4381 gcgggtccag ccgtccccgc cgaacaccga gtgccagtcg ttgggaggct cggtgccctc
     4441 ggcgccgtcg gtgcctctgc cgtcgcggaa gatgtagcgg tcccgttcgg ggctacctgg
     4501 ggcggcggac agcgcagcag tgaaccactc gtgctcgtcg gagctgtggt tggggacgag
     4561 gtcgacgatg accttcaggc cgagctcgtg ggccttggcg accatggcgt cggcatcctg
     4621 gagcgtgccg aacagggggt cgatggcgcg atagtcggcg acgtcgtagc ccgcgtcggc
     4681 ctggggagac ttgtagaagg ggctgaacca gaccgcgtcg acacccagcg ccttgaggta
     4741 gcccagacgc gctgtcacgc caggcaggtc accgatgccg tcgccgtcgg cgtcggccca
     4801 cgacctcgga tagatctggt agatcaccgc gtggcgccac caggaggcgt cgtgggagtc
     4861 ggc
//
LOCUS       DASYFY010000120         7328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_481654, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000120 DASYFY010000000
VERSION     DASYFY010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7328
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481654"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VGN19_02265"
     CDS             complement(<1..570)
                     /locus_tag="VGN19_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194739.1"
                     /translation="MSPTFSSLSVRNYRVYAIGAFVSNIGTWMGRVAQDWLVLTELTR
                     HSSTALGIVTGLQFLPFLLLAPWAGMIADRYPKRAILAVTQTALALSSLALGLLVVTG
                     TAQLWMVYAIALFTGLATAVDNPARQTFVSEMVPRDHLANAVSLNSASFNGGRLIGPG
                     VAGLTIAAFGTGWTLLLNTGTFVAVLVALA"
     gene            complement(567..1034)
                     /locus_tag="VGN19_02270"
     CDS             complement(567..1034)
                     /locus_tag="VGN19_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7194740.1"
                     /translation="MKPATARRRRTQDNALTPSAVTALAGELRLACMRISRRVRFESF
                     EAVAPHQFSVLARLDGTPRTPGELAEIERVSAPSMTRTVGGLVERGLVGRTDDPADRR
                     QVILSLTPAGAKLLKEIRRERDAWMSVRVGRLGPQEQRVLVEAAAILTRVAAE"
     gene            complement(1164..2678)
                     /locus_tag="VGN19_02275"
     CDS             complement(1164..2678)
                     /locus_tag="VGN19_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEV7194741.1"
                     /translation="MPKSTTSVGTTPRPVGSAPVSRVDRFFQITERGSTVGREVRGGL
                     VTFFTMAYIVVLNPLIIGTQQDGSGKFLGGGDVAHAITLVAAGTALIAGVMTVLMGVV
                     ANFPIALATGLGLNAFVTFGIAKLPQMTWADAMGLVVIEGVIITALVLTGFRQAVFRA
                     IPGELKTAISVGIGLFIAIIGLVDAGFVRKPAAGPVPVELGIGGFLNGWPLLVFVVGL
                     LAIVVMMVKRVKGAILYGIIGATVLAVIVEAVGRIGPQADATGKVVNPAGWGLNVPKL
                     PTQLVDVPNFGLLGHFSVLGSFSKIGVVSAVLLVFTLLLADFFDTMGTMVAIGAEAGL
                     LDAAGNPPKSDKILLVDSLAAIAGGAGSVSSNTAYIESASGVGEGARTGLASVVTGAL
                     FLVATFLAPLVKVVPYEAATPALVVVGFLMMQQVRGIDWEDLEIAIPAFLTIILMPFT
                     YSITAGIGAGFVVYTLLKVVRGKASVIHPLMWAVSGLFVLYFAVDPVKQLLGVH"
     gene            2734..2991
                     /locus_tag="VGN19_02280"
     CDS             2734..2991
                     /locus_tag="VGN19_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2530 domain-containing protein"
                     /protein_id="HEV7194742.1"
                     /translation="MSESQHGSPNRPPGDELQPLALRTKHVIVGGTVAWLVALALTLM
                     VPALHQGDRQWWPWTCVAGISLGAFGYAYVRRGRGNASDAL"
     gene            complement(3055..3798)
                     /locus_tag="VGN19_02285"
     CDS             complement(3055..3798)
                     /locus_tag="VGN19_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3027 domain-containing protein"
                     /protein_id="HEV7194743.1"
                     /translation="MAVVKDDAVLAAAPVIDLARDAAASIAEPGTVGDHLGLQMDDER
                     IGTHFFACTASAYPGWRWAITVARVPRGKVATVCETNLVPGEGALLSPEWLPYADRIA
                     PGDVGVGDVLPYKEVDPLLEPGFEATGDEEVDQIATFELGLGRKRVLSAEGREAAAQR
                     WYEGEGGPHSEVAEKAPAPCSSCGYFVPMGGALRSFFGVCANAWSPSDGRVVSLDHGC
                     GAHSEIDVEPPTPVMVGEPIIDENAYDLV"
     gene            complement(3798..4193)
                     /locus_tag="VGN19_02290"
     CDS             complement(3798..4193)
                     /locus_tag="VGN19_02290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEV7194744.1"
                     /translation="MPTGKVKWYDAEKGFGFISDDDGGDVFLHANALPEGVTTLKGGV
                     RVEFSVAEGRRGTQALQLTLLEPAPSVAAGKREASRKSPEDLAPLVEDAIKLLDSASN
                     SLRRGRRLDKDHGTKVAQVLRFLAEQLEP"
     gene            4367..5674
                     /locus_tag="VGN19_02295"
     CDS             4367..5674
                     /locus_tag="VGN19_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194745.1"
                     /translation="MSETPLQGHTMRQFWGELSPAGRWLLSTVAVQTLGRGLTLPFTV
                     IYLHEVRGISLDLAGLLMAFIAVVALAVTGPGGALTDRLGARVMLLAASVAEVVGLAV
                     LAFATTPAVVAAAFLLIGINFGVSWPALNALVAAIVARPARQQYFGINFALVNLGIGL
                     GGVIGGLYTDVHRPQTFTVVFLANAATMLVPVVLLLGPLRHVHGRAERPEGTDPGAGS
                     YLAILRDPAVVWMTVLTFLGTFVGYGQMEAGFPAFARQVSHVSTSVVGFAFAVNTAVI
                     VGLQFFVLRRIVGRRRTRVLTVMAALWAAAWILLGLTGLGPGTVAAAAGVLTFHALFA
                     LGETLLQPTVPAITNDLAPDHLRGRYNAVNAGAFQGGTILGPVVAGVMLGHGWSTAFV
                     VMIVAGCAVMAVLARVVELRITPEVNGLAQPAPTLMPQVPVHD"
     gene            complement(5629..6552)
                     /locus_tag="VGN19_02300"
     CDS             complement(5629..6552)
                     /locus_tag="VGN19_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEV7194746.1"
                     /translation="MTSPVSGEQWVIRHDTQVATVVELGGGLRTYACDGVEVLAGYGP
                     QEMAKSGRGQLLMPWPNRVRDGRYGFGGTQYQLPLTEPALHNASHGLVRWLPWRLVDH
                     SASELTVGARLFPQPGWDGVLALEVTYAVGDSGLSVTTRATNVGARPLPFGFGAHPYV
                     AVGDTPLADVVLRLPASQEVLVDERLLPRATAKVRPEVDFRRARPLGGTSLDTAYTQV
                     DREPDTGRWEVTVSGLRDRPAVTVWGDEAFDWFQVFTAKGADSGVDGTRGIAVEPMSC
                     PADAFNSGEGLVSLGPGQSWTGTWGIRVGAG"
     gene            complement(6639..7145)
                     /locus_tag="VGN19_02305"
     CDS             complement(6639..7145)
                     /locus_tag="VGN19_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194747.1"
                     /translation="MIALIVAFCLALLLVIGVVGAGLFFGFHAWGNHRGAQIARMAVP
                     GKPFAPGQRQQLKRHQIVPGPGLRGNGLGQAIPGLGALGSVQHGEFTVAGANGQATVM
                     TLQRGTVTAASTSSVTVRSTDGFSATYAVDSSTRVPAAKLANGDTVLVVATKSAAKAV
                     LIRIARVS"
BASE COUNT         1191 a         2526 c         2490 g         1121 t
ORIGIN      
        1 ggccagggca accaggacgg ccacgaaggt gccggtgttg aggagcaacg tccagcccgt
       61 gccgaaggcg gcgatcgtca ggcctgcgac cccagggcca atcagccgtc cgccgttgaa
      121 cgacgcgctg ttgagcgaga cggcgttggc gaggtggtct cgcggcacca tctcggagac
      181 gaacgtctgg cgcgccgggt tgtccacggc cgtcgcgagc cccgtgaaca gggcgatggc
      241 gtagaccatc cacagctgcg cggtgcccgt gaccaccagc agcccgagcg cgagggagga
      301 cagggccagt gcagtctggg tcaccgcgag aatcgcccgc ttcggatagc ggtcggcgat
      361 catgcccgcc cacggtgcaa ggagcaggaa cggcaggaac tgcagtccgg tgacgatgcc
      421 caaagccgtg gaggagtgcc gggtgagctc ggtcagaacc agccagtcct gggcgacccg
      481 tcccatccac gtaccgatgt tggagacgaa ggcgccgatg gcatagacgc ggtagttccg
      541 aacgctgagt gaggagaagg tcgggctcat tccgcggcca ctctcgtgag gatcgccgcg
      601 gcctcgacca gcacccgttg ctcctgcggc cccaggcgcc cgactcgcac cgacatccag
      661 gcatcgcgtt cgcgtcggat ctccttgagc agcttggccc cagctggtgt cagcgagagg
      721 atcacctgac gtcgatccgc ggggtcgtcc gtacgcccga ccagcccgcg ctcgaccagt
      781 cccccgacgg tgcgggtcat gctcggggcg ctgacgcgct cgatctcggc aagctcgccg
      841 ggagtgcgtg gggtgccgtc gaggcgagcc agcacggaga actggtgcgg cgccacggcc
      901 tcgaagctct cgaaacgtac tcgtcgagag atgcgcatgc aggccagcct cagctcaccg
      961 gcaagggccg tgacggccga aggcgtgagt gcgttgtcct gggtgcggcg acggcgcgcg
     1021 gtggcgggtt tcatgagcga ctccttcgat acttagcata actcattacc tgtgctaagt
     1081 atttctcaga caagaaagcc gcaaacgcag gtatgccgcg gcccccttgg tgggggacgc
     1141 ggcatacctg gatggcggtg aggtcagtgc accccgagca gctgcttgac cgggtccact
     1201 gcgaagtaaa ggacgaacag gccggacacc gcccacatca gcgggtggat cacggaagcc
     1261 ttgccgcgca ccaccttgag gagcgtgtat acgacgaacc ccgcaccgat gccagccgtg
     1321 atcgagtagg tgaagggcat aaggatgatc gtcaggaacg cggggatggc gatctcgagg
     1381 tcctcccagt cgatgccacg gacctgctgc atcatcagga acccgacgac caccagggcc
     1441 ggtgtcgcag cctcgtaggg cacgaccttg acgagcggcg cgaggaacgt cgcgacgagg
     1501 aagagcgcac cggtgaccac cgacgcgaga ccggtccggg caccctctcc gacccccgag
     1561 gcggactcga tgtacgcggt gttggacgag accgaaccag cgccaccggc gatggccgcc
     1621 agtgagtcga cgagcaggat cttgtccgac ttcggcgggt tgcccgccgc gtcgagcagc
     1681 ccggcctcgg cgccgatcgc gaccatggtg cccatcgtgt cgaagaagtc ggccagcaac
     1741 agggtgaaga ccagcagcac ggcggagacg acgccgatct tggagaagga cccgaggaca
     1801 ctgaagtgcc ccagcagccc gaagttgggg acatcgacga gctgggtggg cagcttgggg
     1861 acgttcagac cccagccggc cgggttgacc accttgccgg tggcgtcggc ttggggcccg
     1921 attctgccga cagcctcgac gatgacggcc aggaccgtcg cgccgatgat gccgtagagg
     1981 atggcaccct tgacgcgctt gaccatcatc acgacgatcg cgagcaggcc gaccacgaag
     2041 accagcagcg gccagccgtt gaggaatcca ccgatgccga gctccaccgg gaccggaccg
     2101 gcagcgggct tgcgcacgaa gccggcatcg accaggccga tgatggcgat gaacaagccg
     2161 atgccgacgg agatcgcggt cttgagctcc cctgggatgg cgcggaacac ggcctgccgg
     2221 aagccggtca gcaccagcgc agtgatgatg acgccctcga tgacgaccag ccccatggca
     2281 tctgcccagg tcatctgcgg cagcttggcg atgccgaagg tcacgaaggc gttcagcccg
     2341 agcccggtcg ccagggcgat cgggaagttc gcgaccaccc ccatcagcac ggtcatgacg
     2401 ccggcgatca gcgcggtgcc cgccgcaacg agtgtgatcg catgggcgac gtcaccgccg
     2461 ccgaggaact tgcctgaacc gtcctgttgg gtgccgatga tgagcgggtt aagcaccacg
     2521 atgtacgcca tcgtgaagaa ggtgaccagg ccgccgcgga cctcgcggcc caccgtcgac
     2581 ccccgctcgg tgatttggaa gaagcgatcg acccggctga cgggggcgct tccgaccggc
     2641 cgcggagtcg tgccgaccga tgtcgtggac tttggcatgg gcagcaggtt agggcctggg
     2701 ggtgacggag acgactcagg ttaggctcga cgcgtgagcg agtcgcagca tggttccccg
     2761 aaccgtcccc cgggtgacga gctgcaacct ctggctctcc gcacgaaaca cgtgatcgtc
     2821 ggcggcaccg tcgcctggct tgtggcgctg gccctcaccc tgatggtccc cgcgctccac
     2881 caaggagatc gccaatggtg gccctggacc tgcgtcgcgg ggatctcact gggtgcgttc
     2941 ggctatgcct acgtgcgccg cggtcgcggc aacgcctccg acgccctcta gagggtccga
     3001 cgcccgttag aggttccgac ggccggacag cagaaagccg gtcagcgcgc cgggtcagac
     3061 caggtcgtac gcgttctcgt cgatgatcgg ctcgccgacc atcacgggcg tgggcggctc
     3121 gacgtcgatc tcggagtggg cgccgcagcc gtggtcaaga ctcacgacgc gaccgtcgct
     3181 tggtgaccag gcgttggcgc acacgccgaa aaaagagcga agtgcaccgc ccatcgggac
     3241 gaagtaccca cacgaggagc acggcgcagg ggccttctcg gcgacctcgg agtgcggacc
     3301 gccttcaccc tcgtaccacc gctgggccgc ggcctcgcgg ccctccgcgg agagcacgcg
     3361 cttgcggccc agcccgagct cgaaggtcgc gatctggtcg acctcctcgt cgccggtggc
     3421 ctcgaagcct ggctccagca gcgggtcgac ctccttgtag ggcagcacat cgccgacccc
     3481 cacgtcaccg ggcgcgatgc gatcggcata cgggagccac tcgggcgaga gcagcgcgcc
     3541 ctcaccgggc acgaggttgg tctcgcacac ggtggccacc ttgccgcgcg gtacgcgcgc
     3601 gacggtgatc gcccaccgcc agccggggta ggcactggcc gtgcacgcga agaagtgggt
     3661 accgatccgc tcgtcatcca tctgcagacc gaggtggtcc ccgacggtgc cgggctcggc
     3721 gatcgacgcc gcagcgtccc gcgccaggtc gatgaccggg gcggcggcta ggacagcgtc
     3781 gtccttgacg actgccatca gggctccagc tgctcggcca ggaagcgcag gacctgagcc
     3841 accttggtgc cgtggtcctt gtcgagacgg cgtccgcggc gcagggagtt cgaggcgctg
     3901 tcgagcagct tgatggcatc ctcgaccagc ggcgccaggt cctcggggga cttgcggctc
     3961 gcctcgcgct tgccagcggc gaccgacgga gcgggctcga gcaacgtcag ctgcagcgcc
     4021 tgggtgccgc ggcggccctc ggccacgctg aactcgacgc ggacgccgcc cttgagggtg
     4081 gtcacaccct cgggcagcgc gttcgcgtgc aggaacacgt caccaccgtc gtcgtcggag
     4141 atgaagccga agcccttctc cgcgtcgtac cacttgacct tgccagtggg cactgtccac
     4201 ctctgccatg aatgagagac cgccggtctc gaaacgtttg ggtgcgccgt tgcgctcccg
     4261 caaggctaac gcctggcgcc aaatcgttta gcggtatgtc gcgtgctcac ctccgcgacc
     4321 ggaaaaccgg ttcagagctg tcggtgggat gcggcaggat cgacgtgtga gtgaaacacc
     4381 cttgcagggg cacacgatgc gacagttctg gggcgagctg tcccccgccg ggcgctggct
     4441 gctctcgacc gtcgccgtgc agaccctcgg tcggggcttg acgctcccct tcacggtgat
     4501 ctacctgcac gaggtgcggg gcatctccct cgacctcgcc ggtctgctga tggccttcat
     4561 cgccgtggtg gccctcgcgg tcaccggtcc gggcggcgcg ctgaccgacc gactcggcgc
     4621 ccgcgtcatg ctcctggccg ccagcgtggc agaggtggtc ggcctcgccg tgctggcctt
     4681 cgcgacgacg ccagctgtcg tggctgccgc cttcctgctc atcggcatca acttcggcgt
     4741 ctcgtggcca gccctgaacg cgctcgtcgc tgcgatcgtt gccaggccgg ctcgtcagca
     4801 gtacttcggg atcaacttcg cgctggtcaa cctcggcatc gggctgggcg gcgtcatcgg
     4861 cggcctctac accgacgtgc accgcccgca gaccttcacc gtcgtcttcc tggcgaacgc
     4921 agcaaccatg ctggtccccg tcgtgctgct gctgggaccc ctgcggcacg tgcacggtcg
     4981 cgctgagcga cccgagggga ccgatcctgg cgcaggctct tatctcgcca ttctgcgcga
     5041 ccccgccgtc gtgtggatga cggtcctgac cttccttggc acgttcgtcg gctacggcca
     5101 gatggaggcg ggcttcccgg cgttcgcccg ccaggtcagc cacgtgtcca cctcggtggt
     5161 cggcttcgcc ttcgccgtga acaccgctgt catcgtcggg ctgcagttct tcgtgctgcg
     5221 ccgcatcgtg ggccgtcgac gcacccgggt cctcacagtg atggcggccc tgtgggccgc
     5281 ggcctggatc ctgctcggac tgaccggtct tggcccgggc accgtggcgg cggcagccgg
     5341 ggtgctgacg ttccacgccc tgttcgcgct gggcgagacg ctccttcagc ccaccgtccc
     5401 ggccatcacg aacgacctgg cgccggacca ccttcgcggc cgctacaacg cggtcaacgc
     5461 cggcgccttc cagggcggga ccatcctcgg accagtggtg gctggcgtca tgctcggcca
     5521 cgggtggtcg accgcgttcg tcgtgatgat cgtggcgggc tgtgccgtga tggccgtgct
     5581 ggcccgggtc gtcgagctcc ggatcacgcc agaggtgaac ggcctggctc agcctgcccc
     5641 gaccctgatg ccccaggtgc ctgtccacga ctgacctgga cccaggctca ccagaccttc
     5701 gcccgagttg aacgcgtcgg ccgggcagct catcggttcc acagcgatcc cgcgcgtccc
     5761 gtcgacaccg gagtcagcgc ccttggccgt gaacacctgg aaccagtcga aggcctcatc
     5821 accccagacc gtcaccgctg gccggtcccg aagacccgac accgtgacct cccaccgacc
     5881 ggtgtcgggt tcccgatcca cctgcgtgta tgccgtgtcg agactcgtgc cacccaacgg
     5941 gcgcgcccgc ctgaagtcga cctccgggcg gaccttggcc gtggccctgg gcaacagacg
     6001 ttcgtcgacc aggacctcct ggctcgccgg cagccgaagc acgacgtcgg caagcggtgt
     6061 gtccccgact gcgacatagg gatgggcgcc aaacccgaac ggcaggggcc tagcgcccac
     6121 gttggtggcc cgagtggtca cgctcagacc cgagtcgccc acggcatacg tcacctcgag
     6181 cgcaagcacc ccatcccagc ccggctgcgg aaagaggcgt gcccccaccg tcagctcgga
     6241 cgctgaatgg tccaccagtc gccagggcag ccaccgaacc aggccgtggc tcgcgttgtg
     6301 gagggccggc tcggtcagcg gcagctggta ctgcgtcccg ccgaagccgt agcggccgtc
     6361 ccgtacgcgg ttcggccacg gcatgagcag ttggccgcgc cctgacttgg ccatctcctg
     6421 cgggccatag ccggccagta cctcgactcc gtcgcaggcg tacgtccgca gccccccgcc
     6481 cagctccacc acggtcgcga cctgggtgtc atggcggatg acccactgtt caccgctgac
     6541 cggagacgtc atcagccaac cctaggacgc aacccgcctc gaccgcccgg atcgtctcga
     6601 cccgcgcacg gatgcgatga agacgagcga ctcagggctt aggagacgcg ggcgatccgg
     6661 atcagcaccg ccttggcggc cgacttcgtc gcaaccacga ggacggtgtc accgttggcg
     6721 agctttgcgg caggcacgcg ggtgctggag tccacggcat acgtggcgct gaagccgtcg
     6781 gtgctgcgca cggtgaccga cgaggtgctg gccgcggtca cggtgccccg ctgcagcgtc
     6841 atgacggtcg cctggccatt ggcaccggcc acggtgaact ctccgtgctg caccgaaccg
     6901 agagcaccga gaccagggat cgcctggccc aacccgttac cccgaagacc cgggccgggc
     6961 acgatctggt gccgcttcag ctgctggcgc tgaccggggg cgaacggctt gcctgggacc
     7021 gccatccggg cgatctgggc accgcggtga ttaccccagg catggaaccc gaagaacaac
     7081 cccgcgccga ccaccccgat gacgagcagg agggccaggc agaaggcgac gatcagggcg
     7141 atcaaaccac cggtggttga ggtggcctgg cgccagaggt tcggcctacg cggcggcgga
     7201 ccggcaggca ttgcctgggt cgtcgctggg tgcggtgtgc ccgcgggcca gttttccggg
     7261 ccttgcgggg tgcgcggtgt gttgggctct gtcatggcgc ctcccttccc tgccatcact
     7321 atgagtgt
//
LOCUS       DASYFY010000121         1677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1270567, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000121 DASYFY010000000
VERSION     DASYFY010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1270567"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..1127)
                     /locus_tag="VGN19_02310"
     CDS             complement(105..1127)
                     /locus_tag="VGN19_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003802330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HEV7194748.1"
                     /translation="MPAVDVSLLTRARLRLDWLPGLVVVAFATAVAFAVAHVVPALNP
                     STVAVALGAVLANSGLHRARLHPGTRLAGHRLLRISIVLLGLQLSLPQLLHLGAGGLS
                     VVLATVTITLIGTQLLGRALGVSAPRSLLVATGFAICGASAVAAMEPVAGGDEEDTGI
                     AVALVTLCGSLAILVLPALRTPLGLDVSSFGSWVGASVHDVGQTVATANRVPGALSTA
                     VVVKLTRVVLLAPLVAGVAVLRRRRAHDESGAAARRPPAVPLFVAGFLAAVALASTGI
                     LHAVELSAAKSVQQVLLAAALVGLGTSIHLPTLRRTGARALLLGSGSWVLVATVAYVG
                     VRLVAR"
BASE COUNT          301 a          559 c          591 g          226 t
ORIGIN      
        1 cccagtccac gccagcgtcg atcggtatcg ggctcacgag acctgcaccg tccacgatgg
       61 ccccgcggca gcagcgtcgg acacggcctt tcgtcccgtc gggctcaccg agccactaac
      121 cgcacaccca cgtaggcgac cgtggcgacg aggacccagg atcctgagcc cagcaggagc
      181 gctcgtgccc cggtgcggcg cagggtgggc aggtggatgg aagtccccag accgacaagg
      241 gctgcggcga gcagtacctg ttgcacgctc ttggcggcgc tcagttcgac cgcatgcagg
      301 atgccggtgc tggcgagtgc caccgcggcg aggaatccgg cgacgaacag cggcaccgct
      361 ggcgggcggc gcgcggccgc tccgctctcg tcgtgggcgc gtcgtcgacg cagcactgcc
      421 acccccgcga ccagcggcgc gagcagcacg acgcgggtga gtttcacgac gacggccgtg
      481 ctcaatgcac cgggcacccg gttggccgtg gccacggtct ggccgacgtc gtgcacactc
      541 gcccccaccc aggacccgaa ggaagacacg tccagcccca ggggcgtgcg tagcgcgggc
      601 aagaccagga tggccaagct accgcacaac gtgaccaggg cgaccgcgat gccggtgtcc
      661 tcttcatcgc ctcctgccac cggctccatg gccgccacgg ccgaagctcc gcagatggcg
      721 aaaccggtag cgacgagcag gctccgggga gctgacacgc cgagtgccct gccgagcagt
      781 tgggtcccga tcagggtgat cgtgacggtc gcgaggacga cggacagccc ccctgcgccg
      841 agatggagca actgcggcag cgacaactgg agcccgagca gcacgatgga gatccgcagc
      901 agcctgtgac cggccagacg cgtacccgga tgaagcctcg cccggtgcag accggagttg
      961 gccagcaccg cgcccagcgc caccgccacc gtggagggat tcagcgccgg cacgacgtgg
     1021 gcgacagcga acgcgactgc ggtagcaaac gccaccacga ccaacccggg aagccagtcc
     1081 agacggagcc gtgccctggt caggagggag acgtcaacgg cgggcatacg catcagcctg
     1141 ccgcactgca cgccctcgca gcaccctcgg cacgcttgta accgtacaag aaacagttgt
     1201 agctacgacc gcgaggagcg ccatccgcca ctggcgtgat tataccccca tgggtatggt
     1261 ggtagcgttc tgggctcagg cccgttcagg tctcattccg aggtggtttg ctgtgtgttc
     1321 gaaggctcga tgcggtagat gcggtaaggc gacgtggcgt ggctgcggtc agcatgtgga
     1381 acaggtcatg gccggcgtcc cgtcgtcaca gcgatgccgg tgtgagccgg aagagcgaaa
     1441 gggactgttc gaccggctcc gcggtcgctg acgtcgaggt gtcccctcgg cctcgcgaag
     1501 gaggtcagcc gcccgtccgt cagagggcgg cgggctcgga gagggatatc tcgacgtgca
     1561 gcggctgggt gaggctgttg tggacggtgc agtgcgaggc cacggccaag agtgcctcaa
     1621 ggcgctcagc aggcacggtt ggaggcggag tcaggacgat ccgtgctgca gcgactc
//
LOCUS       DASYFY010000122         2997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1690401, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000122 DASYFY010000000
VERSION     DASYFY010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1690401"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..629)
                     /gene="arfB"
                     /locus_tag="VGN19_02315"
     CDS             complement(231..629)
                     /gene="arfB"
                     /locus_tag="VGN19_02315"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020077092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HEV7194749.1"
                     /translation="MYRPPERELSWRFSRSSGPGGQGVNTADSRVELSFDVARSPTLP
                     QHLRPRMLARLHGRLVDGVLTVVASEHRSQLRNRDAARERLVALLSTAMAPEPPPRRA
                     TRPTSGSRRRRLDAKSRRGEIKRLRARPDD"
     gene            complement(631..2604)
                     /gene="acs"
                     /locus_tag="VGN19_02320"
     CDS             complement(631..2604)
                     /gene="acs"
                     /locus_tag="VGN19_02320"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEV7194750.1"
                     /translation="MADSGPTLSNLSTESRNFPPSAEFAAQANASEDWYARADTDREG
                     FWAEQAERLTWARKWDTVLEWEAPFAKWFVGGKLNVAVNCVDRHVEAGHGDQVAFHWE
                     GEPGDARTITYADLQREVCQAANALAELGVRAGDRVAIQLPMIPEAAVAMLACARLGA
                     MHSVVFGGFSPSALKARIEDAQAKLLITSDGQYRRGKPAPMKENTDQAVAETSTIEHV
                     LVVRRTQTDVAWTEGRDVWWHDIVGRQADTHEAEAFDAENPLFILYTSGTTGKPKGIL
                     HTSGGFLTQVAYTHNVVFDHKAGQSVYWCTADIGWVTGHSYIVYGPLANRATSVMYEG
                     TPNTPHEGRHWEIIQKYGVSIYYTAPTLIRTFMKWGKQIPERYDLSSLRVLGSVGEPI
                     NPEAWMWYRENVGHNSCPIVDTWWQTETGAIMISPLPGVTATKPGSAMRALPGISAEV
                     VNDEAAPVGPGGGGYLVLDKPWPSMLRGIWGDEERYRDTYWSRFADQGYYFAGDGAKY
                     DLDGAVWLLGRVDDVMNVSGHRISTTEVESALVSHPTVAEAAVVGASDAQTGQGIVAF
                     VILRGNVAQDEAKGAEAIKALRDHVSKEIGPIAKPRQIMVVDELPKTRSGKIMRRLLR
                     DVAENREVGDVTTLADSSVMDLISTGMKGSSED"
     gene            2742..>2997
                     /locus_tag="VGN19_02325"
     CDS             2742..>2997
                     /locus_tag="VGN19_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013770003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194751.1"
                     /translation="MRPSRVSDPLAPLLDLPGVAEAVVKARDAVVTLHHHPVNRTGWT
                     ASAAEAALRAARASAALDGARLVIDRRAGAEDGDGCDDAGD"
BASE COUNT          428 a         1098 c          997 g          474 t
ORIGIN      
        1 ctcgggcgcg agcgggatcg agggcagcac ggggggaacc gcctccgcgc cacctctgct
       61 ggtcgggctg gtcaccgctg gacctcctag cgtccgctcg ccgatcctct gtcgatgatc
      121 cgctgttgat gatcccttgt cgatgatccc tgggcatcct tccacggcta cccatcccgc
      181 gcccgaccag ccacgccgtg aagggtgccc acacggaggt gtggttaccg ctagtcgtca
      241 ggccgtgcgc gcagtcgctt gatctcgccg cgccgggact tggcgtcgag cctgcggcgc
      301 cgtgacccgg acgtcggacg ggtggcccga cgcggcggcg gctcgggcgc catcgcggtg
      361 gacagcagcg cgacgagccg ttccctggcg gcgtcgcggt tgcgcagctg gctgcggtgc
      421 tcgctcgcga cgaccgtcag cacgccgtcg acgagccgtc cgtgcagccg ggccagcatc
      481 cgggggcgga gatgctgcgg cagcgtgggt gagcgcgcga cgtcgaacga cagctcgacc
      541 cgcgaatcgg cggtgttgac gccctgcccg cccggccccg aggagcgcga gaaccgccac
      601 gacagctcgc gctccggggg ccggtacacc tcagtcctcc gatgagccct tcatgcccgt
      661 ggagatgagg tccatgaccg aggagtcggc gagggtggtg acgtcgccga cctcgcggtt
      721 ctccgcgaca tcgcgcagca gccgtcgcat gatcttgccc gagcgggtct tgggcagctc
      781 gtccacgacc atgatctggc ggggcttggc gatcggcccg atctccttcg acacgtgatc
      841 acgcagcgcc ttgatcgcct cggcgccctt ggcctcgtcc tgggccacgt tgccgcgcag
      901 gatcacgaac gccacgatgc cctgcccggt ttgcgcgtcc gacgcgccca cgaccgcggc
      961 ctcggccacg gtggggtggc tgaccagcgc ggactccacc tcggtggtcg agatccggtg
     1021 cccggacacg ttcatcacgt catccacccg gcccagcagc cagaccgcgc cgtccaggtc
     1081 gtacttggcg ccgtcaccgg cgaagtagta gccctgatcg gcgaaccgcg accagtaggt
     1141 gtcgcggtaa cgctcctcgt cgccccagat accgcgcagc atcgacggcc acggcttgtc
     1201 caacaccaga tagcccccac cacccgggcc gaccggcgcc gcctcgtcgt tcacgacctc
     1261 ggcgctgatc cccggcaacg cgcgcatcgc cgaaccgggc ttggtcgcgg tgacccccgg
     1321 caacggcgag atcatgatcg ccccggtctc ggtctgccac caggtgtcca cgatcgggca
     1381 gctgttgtgc ccgacgttct cccggtacca catccaggcc tcggggttga tgggctcgcc
     1441 cacactgccc aacacccgca gcgaggacag gtcatagcgc tccgggatct gtttgcccca
     1501 cttcatgaac gtgcggatca gggtgggcgc ggtgtagtag atcgacaccc cgtacttctg
     1561 gatgatctcc cagtggcggc cctcgtgcgg ggtgttcggg gtgccctcgt acatgaccga
     1621 cgtggcccgg ttggccagcg gcccgtagac gatgtagctg tgcccggtga cccagccgat
     1681 atcggcggtg caccagtaca cactctgccc cgccttgtgg tcgaacacca cgttgtgggt
     1741 gtaggcgacc tgggtgagga agccacccga ggtgtgcagg atgcccttcg gcttccccgt
     1801 ggtgcccgag gtgtagagga tgaacagcgg gttctccgca tcgaacgcct ccgcctcgtg
     1861 cgtgtcggcc tgccgcccga cgatgtcgtg ccaccacacg tcacgaccct cggtccacgc
     1921 cacgtcggtc tgggtgcgcc gcaccaccag cacatgctcg atcgtggagg tctccgcgac
     1981 ggcctggtcg gtgttctcct tcatcggcgc aggcttgccc cgccggtact gcccgtcgga
     2041 ggtgatcagc aacttcgcct gcgcgtcctc gatgcgggcc ttgagcgcgc tcggggagaa
     2101 cccaccgaac accacgctgt gcatggcgcc cagccgcgcg cacgccaaca tcgcgaccgc
     2161 ggcctcgggg atcatcggca gctggatcgc cacccgatca cccgcacgca cacccaactc
     2221 ggccaacgcg ttcgcggcct gacacacctc gcgctgcaga tcggcgtagg tgatggtgcg
     2281 ggcgtcgccc ggctcaccct cccaatggaa cgcgacctgg tcaccatgcc cggcctcgac
     2341 atgccggtcc acgcagttga ccgccacgtt gagcttgcca ccgacaaacc acttcgcaaa
     2401 cggcgcctcc cactccaaca ccgtgtccca cttccgggcc caggtcagcc gctcggcctg
     2461 ctccgcccag aacccctccc ggtcggtatc cgcacgcgca taccagtcct cggaggcgtt
     2521 ggcctgcgcg gcgaactccg cactcggcgg gaaattacgg ctctcagtag acagattcga
     2581 aagggtgggt cccgagtcgg ccatggtcgt ctcgtcctcc tcgtccagcg cgccacggcg
     2641 cggcgctgcg cttggggttc gacgctagtc ggcagggtcg cacagcgcac cgtcagtccg
     2701 ggcaggggtg agctgaccct ccggatggca ccatgcctgc cgtgcgcccg tcccgcgtgt
     2761 ccgatccgct ggccccgctg ctggacctgc ccggggtcgc cgaggccgtg gtcaaggccc
     2821 gggacgcggt ggtcacgctg caccaccacc cggtcaaccg gacgggttgg accgcgtccg
     2881 ccgcggaggc ggcgctgcgc gccgcacggg cgtcggcggc gttggacggg gcgcgtctgg
     2941 tgatcgaccg ccgggccggg gccgaggacg gcgacgggtg cgacgacgca ggcgatg
//
LOCUS       DASYFY010000123         2219 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1480522, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000123 DASYFY010000000
VERSION     DASYFY010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1480522"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VGN19_02330"
     CDS             <1..643
                     /locus_tag="VGN19_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043248 - proteasome assembly [Evidence
                     IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEV7194752.1"
                     /translation="GTPFFLLTGPEPDFQWERMSEAVRQLVSVLGVNLVVSAHGIPMA
                     VPHTRPIGLTAHATDPRLIPVQDNPFGRVEVPGSLSALIELRLGESGKDAIGFAIHVP
                     HYLAQAEFADGAVTALNAITAATGLNLPIDDLIAQAGLNRAEIAREVEGSEEVSQVIA
                     ALERQYDTFIEGRQKPSLLATDVSELPSADEIGAEFEQFLREVNDDGGTGSPT"
     gene            complement(685..1485)
                     /locus_tag="VGN19_02335"
     CDS             complement(685..1485)
                     /locus_tag="VGN19_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1206 domain-containing protein"
                     /protein_id="HEV7194753.1"
                     /translation="MNTYDVKRVASRASDHPALEATARAGYAVSGLLHLLIGWIALQV
                     AFGSVSKSADQSGALSALAANGLGKILLWVAVAGFLGLALWQVADAVVGHPGPGGDAW
                     GGRAKAAGKAVVYLALAWSAFGFARGQVTSSKAQSVDFTARLLAKPGGRSLVVVVGLA
                     IVAVGTYHVVKGWTRKFLRDLEENPGTWATRAGRVGYIAKGVALVIVGILFSAAGLHQ
                     QASEATGLDGALRTLRNEPFGMVLLTLMAVGFAAFGLYSFARARHAKV"
     gene            complement(1532..>2219)
                     /locus_tag="VGN19_02340"
     CDS             complement(1532..>2219)
                     /locus_tag="VGN19_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEV7194754.1"
                     /translation="LRSAVAAQPGHVFVRADLGQIEPRVLAVVSEDEAFAAATRADDL
                     YAPVAERLGVERPVAKVAVLAAMYGQRSGAAGEALKGLERAYPVAMAYLDQAYAAGLR
                     REPLRTFGGRLIRLDAILADAPAEGAAAYDAARGRFARNAVIQGSAAELFKAWAATVR
                     ATTRDLGAQIVLCLHDELLVHVPEQHADEVRRRLLVALDDSARRWSGTTRVRFVADAS
                     VIHRWSEAKE"
BASE COUNT          344 a          803 c          753 g          319 t
ORIGIN      
        1 tggcaccccg ttcttcctgc tgaccggccc ggagcccgac ttccagtggg agcggatgtc
       61 cgaggccgtg cgccagctgg tgtcggtact cggggtcaac ctcgtggtca gcgctcacgg
      121 catcccgatg gcggtcccgc acacgcgccc gatcggcctg accgcgcacg ccaccgaccc
      181 gagactgatt ccggtccagg acaacccgtt tggtcgggtc gaggtcccgg gcagcctgtc
      241 ggcgctcatc gagcttcggc tgggtgagag cggcaaggac gccatcggtt tcgcgatcca
      301 tgtcccgcac tacctggccc aggccgagtt cgccgacggg gcggtgacgg ctctgaacgc
      361 gatcaccgcg gccaccgggc tgaacctgcc catcgacgac ctcatcgccc aggctggcct
      421 gaaccgcgcc gagatcgcgc gcgaggtcga gggttcagaa gaggtctcgc aggtcattgc
      481 tgcgctggag cgtcagtacg acacgttcat cgaaggccgc cagaagccca gcctgctcgc
      541 gaccgacgtg agcgagctgc cgtccgccga cgagatcggc gccgagttcg agcagttcct
      601 gcgcgaggtc aacgacgacg gcgggaccgg ctcaccgacc tgaccctgcc tgcgcgaacg
      661 actgagcccg cgcgaacgtc tgggtcagac tttggcatgc cgtgcgcggg cgaagctgta
      721 gaggccgaat gccgcgaagc cgaccgccat cagcgtcagc agcaccatcc cgaacggttc
      781 gttccgtagc gtcctcagcg caccgtcgag cccggtggcc tcactggcct gctggtgtag
      841 gccggcggcg ctgaacagga tgccgacgat gaccaacgcg actcccttgg cgatgtagcc
      901 gactcgcccg gctcgggtcg cccaggtgcc tgggttctcc tcgaggtcac gcaggaactt
      961 cctggtccac cccttgacga cgtggtaggt cccgacggcg acgatcgcca ggccgacgac
     1021 gacgacgagg gagcgtccgc ctggcttggc cagcaggcgc gcggtgaagt cgacgctctg
     1081 ggccttgctg ctcgtcacct gaccgcgggc aaagccgaac gccgaccacg ccagggccag
     1141 gtagaccacg gccttgcccg cagccttcgc ccggccgccc cacgcgtctc cgccggggcc
     1201 cgggtgaccc accacggcat cggcgacctg ccacagggcg agcccgagga aaccggccac
     1261 cgccacccag agcaggatct tccccagacc gttggcagcc agcgcgctca aggctccgct
     1321 ctggtcggcg ctcttgctca cgctgccgaa ggcaacctgg agagcgatcc agccgatcag
     1381 caggtggagc agtccgctca cggcataccc cgctcgagcc gtggcctcca gggccgggtg
     1441 gtcggaggcg cgcgacgcga cgcgcttcac gtcataggtg ttcacgagga aacttaacca
     1501 cgcacctgac cgcgcggtgc cgttgtgctg actactcctt ggcctccgac cagcggtgga
     1561 tgaccgaggc atccgcgacg aaccgaaccc gggtggtgcc gctccagcgc cgggcgctgt
     1621 cgtccagggc taccaggagc cgtcggcgga cctcgtccgc gtgctgctcg gggacgtgca
     1681 cgagcagctc gtcgtggagg cacaacacga tctgcgctcc gaggtcacgg gtcgtggctc
     1741 ggaccgttgc cgcccaggcc ttgaacagct cggccgccga accttggatc accgcgttgc
     1801 gggcgaaccg tccacgtgcc gcgtcgtatg ccgcggcgcc ctccgctggt gcgtcggcca
     1861 ggatggcgtc caggcggatc agccggcccc cgaaggtgcg caacggttct cggcggaggc
     1921 ccgcggcata cgcctggtcg aggtaggcca tggcgactgg gtaggcccgc tcgagcccct
     1981 tgagcgcctc gccggccgcc ccgctgcgtt ggccgtacat cgccgccagc acggccacct
     2041 tggcgaccgg tcgttcgacc cccagtcgct ctgcgaccgg cgcgtagaga tcgtccgccc
     2101 gggtggcggc ggcgaaggcc tcgtcctcgg acacgacggc aagcacccga ggctcgatct
     2161 ggccgaggtc ggcccgcacg aagacatggc ccggctgagc cgcgacggcc gagcgcaga
//
LOCUS       DASYFY010000124         4661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_323273, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000124 DASYFY010000000
VERSION     DASYFY010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323273"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..693)
                     /gene="rplI"
                     /locus_tag="VGN19_02345"
     CDS             complement(247..693)
                     /gene="rplI"
                     /locus_tag="VGN19_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEV7194755.1"
                     /translation="MKVILTHEVSSLGNPGDVVDVKDGYARNFLFRRGLATAWTKGGQ
                     KQVDAISKGREVRAVKTLEEAKSIKGNLENKAIKVVAHAGTGGRLFGAVSTGDVAAAV
                     KAAGGPELDRRKIEITHPIKSVGTHQALVRLHPEVQATVSLDVVGG"
     gene            complement(720..956)
                     /gene="rpsR"
                     /locus_tag="VGN19_02350"
     CDS             complement(720..956)
                     /gene="rpsR"
                     /locus_tag="VGN19_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006503798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEV7194756.1"
                     /translation="MAKPVVRKPKKKANPLKAAKVENIDYKDTALLRKFISDRGKIRA
                     RRVTGVSVQEQRLIATAVKNAREMALLPYSSSSR"
     gene            complement(1090..1641)
                     /locus_tag="VGN19_02355"
     CDS             complement(1090..1641)
                     /locus_tag="VGN19_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEV7194757.1"
                     /translation="MAGDTVITVIGNITGDPELRFTPSGAAVANFTVASTPRQFDRQS
                     NDWKDGETLFMRCSVWRDAAENVAESLQRGTRVIVSGRLKSRSYETKEGEKRTVIEMD
                     VDEVGPSLRYATAKVNRTQRGTGTGGGGFSGGGQGGGQAEDPWATGPSSGPSSSPQTG
                     GQQPTPQGGGWGGGAPSYDEPPF"
     gene            complement(1709..1996)
                     /gene="rpsF"
                     /locus_tag="VGN19_02360"
     CDS             complement(1709..1996)
                     /gene="rpsF"
                     /locus_tag="VGN19_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEV7194758.1"
                     /translation="MRQYELMVILDPELDDRTVAPSLDKFLTVVTKDKGTVDNVDIWG
                     RRRLAFDIKKKSEGIYAVVNFTAEPATAKELDRQLGLNESVMRTKLLRPGA"
     gene            complement(2176..3579)
                     /locus_tag="VGN19_02365"
     CDS             complement(2176..3579)
                     /locus_tag="VGN19_02365"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HEV7194759.1"
                     /translation="MTTPIDPVSGGPLAFAGGPLGRHASARARSWLVTVLPLLVAAAA
                     TMALSVTQRAHCIQQGWVGSDQFWHACFSDLPSQYQLNHLHGGLAGYVGGGAVTSDHP
                     VLTGSVMAALGGLVPNGALVDQTRYFFAFWAVLGTVLAITVVWLTAASRPRHAVDAAQ
                     VALSPVLLLTAMVSSDLFGVALASAGVWAWSRRRPVLAGGLLGLAVMARTYPLLILLA
                     LVFLGLRSGRLNAVGRALGAAAASIAVVVLPFLVGNPSAILRSVQTWGESLPGLGSVW
                     MLPQLVSGTALPVNATTVLALIGVLLAGLAGALLALTTPRRPTLAEVSLVVVAIALIT
                     GKSFPVQSSLWLVPLVALCGLRWRDHLVWATAEALHFVAVWLYVGGLSRPDRGLPAGW
                     YAAFLLLRTASIGYLIWRVWRTAAQRAPVDYPLEDEGLDGGLAAYDVRDEGQWRDDDE
                     LAGELGYAPDHLIVKLG"
     gene            complement(3587..>4661)
                     /locus_tag="VGN19_02370"
     CDS             complement(3587..>4661)
                     /locus_tag="VGN19_02370"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEV7194760.1"
                     /translation="NQFSTATQAQMQAGSTYKAFALIAALQQGISTKTRFNGASPQFF
                     PQFQDSKAATSFLRNGGVANFSDGQSFGNIDLLTATGHSVNTVFAQLNIKVGPDKTKA
                     AAVAAGLPQAAQNGTYSNVFGTSHEHVMDMANAYATIAAQGQRTTPYLIRSVKGGPGG
                     LDYSTKVDAKPVFDKKVMADTIDALQQPVKIGTATFAQGLGRPAAGKTGTTTDNKSAW
                     FDGFTPQLATAVGIYSTGKNGAELSMNNVPGVGQLTGGTVPVEIWTDFMNAALKGQPV
                     ENFPPRAGIGDSSIYTPPPTTTSAPPTTTTTTTTTTTTTTTSAPPTTTTTAPPTPTVT
                     KSIPTPTGTITVLGGPTTGAPTK"
BASE COUNT          722 a         1530 c         1634 g          775 t
ORIGIN      
        1 gtcatcgcag ccaccatggc ggcaacggcc gcatcgacgg cgttcccccc agcccgggcg
       61 acagcagccc ccgcgtccgc tgacgccggt cccgttgccg cgatcgccac ccgcctgctc
      121 atgcgccgat tctggcccat gatccagctg agcgctgacg ggtccggctt cgcggcgacg
      181 agaaaggccc ggccctcccg caggaggacc gggcctttgc cagcattgcc ccgaagggca
      241 gcgcgctcag ccgccgacga cgtccagtga caccgtggcc tgcacctcag ggtgcaggcg
      301 gaccagtgcc tggtgcgtcc cgaccgactt gatcgggtgg gtgatctcga tcttgcggcg
      361 gtccagctcg ggaccaccgg cagccttgac ggcagcggct acatcgccgg tggagacggc
      421 gccgaacagg cgaccgcccg tgccggcgtg tgcgaccacc ttgatggcct tgttctcgag
      481 gttgcccttg atcgacttgg cctcctcgag ggtcttcacg gcgcggacct cacggccctt
      541 gctgatcgcg tcgacctgct tctggccgcc cttggtccag gccgtggcca ggccacgacg
      601 gaacaggaag ttacgggcgt agccgtcctt gacgtcgacg acgtcgccgg ggttgccgag
      661 gctggagacc tcgtgggtca gaatgacctt catctgtcag ttccttccta atccccggct
      721 cagcgggagc tgctggagta gggcagcagc gccatctcgc gggcgttctt gaccgctgta
      781 gcgatgagcc gctgctcctg gacggacaca ccggtcaccc gacgagcgcg gatcttgccg
      841 cggtcggaga tgaacttgcg cagcagcgca gtgtccttgt agtcgatgtt ctcgaccttc
      901 gccgctttga gcgggttggc cttcttcttg ggcttgcgca caacgggctt ggccatcgtg
      961 gtgctctcct tctgctgagt gcctcagcgg atgagccctg gtctcccagg gatggtgttc
     1021 ttgcgtgttt tcagatggag ccgggcgagc atgctcgccg cgccccgtgg tgatcggagc
     1081 cggacctgct cagaacggag gttcgtcgta cgacggagcg ccgccgcccc agccgccacc
     1141 ctgaggcgtc ggctgctggc cgccggtctg cgggctggaa gacgggccgg aggaggggcc
     1201 ggtcgcccag gggtcctcgg cctgtccgcc gccttgcccg ccgccggaga agccgccgcc
     1261 gcccgtgccg gtgccgcgct gggtgcggtt gaccttggcg gtcgcgtacc gcagcgaggg
     1321 accgacctcg tcgacatcca tctcgatgac ggtgcgcttc tcgccctcct tggtctcgta
     1381 cgaacgagac ttcagacggc cggagacgat gactcgggtt cctcgctgga gggactcggc
     1441 cacgttctcg gcggcgtcac gccacaccga gcagcgcatg aacagcgtct cgccgtcctt
     1501 ccagtcgttg gactgccggt cgaactgccg gggcgtcgag gccacggtga agttcgcgac
     1561 ggcagcgccg gacggagtga agcgcagctc ggggtctccg gtgatgttgc cgatgacggt
     1621 gatgacggtg tcgccagcca tgaagcgtgt cccctgttcg tttgggtcag gtggtggagc
     1681 cgggggtcca gatcagatca ggtgcagctc aggcgccggg gcgcaggagc ttggtacgca
     1741 tgaccgactc gttcaggccg agctgacggt ccagctcctt ggccgtggcc ggctccgcgg
     1801 tgaagttgac gacggcgtag atgccctcgg acttcttctt gatgtcgaaa gcaagccgac
     1861 gacggcccca gatgtcgacg ttgtcgacgg tgcccttgtc cttggtcacg acggtgagga
     1921 acttgtcgag cgacggcgcg accgtccggt cgtcaagctc ggggtcgagg atgaccatga
     1981 gttcgtattg acgcatgctg ataacccgcc tcctttggtc tatggcggtc acggtctctc
     2041 cgtgacagga gggttgcagt gcgatccgcc cggaccgact ggtgtcgtgc cgaggcggaa
     2101 cttgacaagg gtaccggcag gtggcgacaa gaccgaatcg ccatccacag gagttgtcgc
     2161 ggcccgagtc tggcgtcagc ccagcttcac gatgaggtgg tccggcgcgt atccgagctc
     2221 gccggcgagc tcgtcgtcgt cgcgccactg cccttcgtca cgaacgtcgt atgccgcgag
     2281 cccaccgtcc agcccctcgt cttcgagcgg gtagtccacc ggcgcccgct gggcagcggt
     2341 gcgccatacg cgccagatga gatagccgat gctggccgtc cgaagaagga ggaacgcggc
     2401 ataccagccg gcagggagtc cccggtcggg ccttgagagg cctccgacgt agagccagac
     2461 ggcgacgaaa tgcagcgcct cagcggtggc ccacaccaga tggtctcgcc agcgcagccc
     2521 gcacagcgcg accaagggca ccagccacaa cgaggactgg accgggaagc tcttgccggt
     2581 gatcagcgcg atggccacga ccacgaggct gacctcggcc agcgtggggc gccgcggcgt
     2641 ggtcagcgct aacagggccc cggccagccc ggccagcaga acaccgatca acgccagcac
     2701 tgtggtcgca ttgaccggca gggccgtacc ggagacgagc tggggcagca tccacaccga
     2761 gcccaggccg ggcaggctct cgccccaggt ctggacggat cgaaggatcg ccgaggggtt
     2821 gccgaccagg aagggcagca cgacgaccgc gatcgaggcg gcggcggcac ccagcgcgcg
     2881 gccgactgcg ttgagtcgcc ccgaccgcaa cccgaggaag accaacgcaa gcaggatgag
     2941 cagggggtag gtgcgcgcca tgaccgcaag ccccagcagc ccacccgcca gcacgggccg
     3001 acgccggctc caggcccaca cccccgcgct ggccagcgcc acgccgaaca ggtccgagga
     3061 gaccatggcc gtcagaagca ggaccgggct cagggcgacc tgcgctgcgt cgaccgcatg
     3121 ccgggggcgt gatgccgccg tcagccagac gaccgtgatg gcgaggaccg tcccgagtac
     3181 ggcccagaag gcaaagaagt agcgcgtctg gtccaccagc gcgccgttgg gcacgagacc
     3241 acccaaggct gccatcaccg atccggtcag gaccggatgg tcggaagtca ccgcaccacc
     3301 gcccacatag cccgcgagcc cgccatggag gtggttcagc tggtactggg acggcagatc
     3361 ggagaagcag gcgtgccaga actggtccga gccgacccac ccctgctgga tgcagtgtgc
     3421 gcgttgggtg acggacagcg ccatcgtcgc cgccgctgcc accagcaacg gcagcaccgt
     3481 caccaaccag gagcgcgccc gcgccgacgc gtggcggccc aacggcccac cggcaaatgc
     3541 cagcgggccg cccgacacgg ggtcgatagg ggtcgtcatg tggtcgtcac ttggtcggtg
     3601 cccctgtcgt gggtccgccg aggacggtga tggtgcccgt cggagtcggg atcgacttgg
     3661 tcaccgtcgg tgtgggtggc gccgtcgtcg tggtggtcgg cggcgccgac gtggtcgtcg
     3721 tggtcgtcgt cgtggtggtc gtggtggtcg tcgtcggcgg cgccgaagtg gtggtcggcg
     3781 gcggggtgta gatgctcgag tcaccgatgc ctgcccgcgg cgggaagttt tccaccggct
     3841 ggcccttgag cgcggcattc atgaagtcgg tccagatctc gaccggcacc gtgccaccgg
     3901 tcagctggcc cacgccagga acgttgttca tcgacagctc tgcaccgttc ttgccggtgc
     3961 tgtagatccc gacggcggtg gccagctgtg gggtgaagcc gtcgaaccag gccgacttgt
     4021 tgtcggtggt cgtgccggtc ttgcctgctg ccggtcgacc caggccctgg gcgaacgtcg
     4081 cggtgccgat cttgaccggc tgctgaaggg cgtcgatcgt gtcggccatg accttcttgt
     4141 cgaagacggg cttggcgtcg accttggtcg agtagtccag accaccgggg ccgcccttga
     4201 cgctcctgat gaggtacggc gtggtgcgct gcccctgtgc cgcgatggtc gcgtacgcgt
     4261 tggccatatc catgacgtgc tcgtgagagg taccgaagac gttggagtag gtgccgttct
     4321 gtgccgcctg cgggagaccg gcggcgacag ccgcggcctt cgtcttgtcc ggaccgacct
     4381 tgatgttgag ctgagcgaac acggtgttca cggaatggcc cgttgcggtg agcaggtcga
     4441 tgttgccgaa cgactggcca tcgctgaagt tcgccactcc accgttgcgc aggaacgacg
     4501 tcgccgcttt ggagtcctgg aactgcggga agaactgcgg ggacgcgccg ttgaaccgcg
     4561 tcttggtgct gatcccctgc tgcaacgcgg cgatcagcgc gaaggccttg taggtcgagc
     4621 cagcctgcat ctgggcctgg gtggcggtgc tgaactggtt c
//
LOCUS       DASYFY010000125         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_639439, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000125 DASYFY010000000
VERSION     DASYFY010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639439"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VGN19_02375"
     CDS             <1..548
                     /locus_tag="VGN19_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7194761.1"
                     /translation="DGRDYRVAFVPEPVCWTEVPSTFRVLRSQRSRWHRGLWETLWAY
                     RGMVLRPRYGRVGMVALPYYWLFELVAPLLEAFGIFIVSLALLLGVVNLPFAILFLLL
                     AYGFAILVTLSALAVEEWAYHRHERWRDLAMIVLAPVVENIGYRQLTVVWRLQGWWAS
                     LRNKKQVWGVMTRTGFDEASP"
     gene            545..>1700
                     /locus_tag="VGN19_02380"
     CDS             545..>1700
                     /locus_tag="VGN19_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194762.1"
                     /translation="MTPLADRSVSTQLKVLGIALLLLVPGVGLAAVSTLVSQGHAIQA
                     LTLALGPAFDANNAALIDMTAANASWSQIMGGSTPLSGYSTRRTQVESELTVLQTAVA
                     SPTLTADDHRRFGTLISQQRAAVDAWFTAALQAQNLKDGPPGGKSAAAAQAISTFRVF
                     SDTNHDLGEQIRVERDEARKGSRVSLELVGAVVAASSLLAMGIVVSGWRLLERSVSGP
                     LERLRLVLERQRDGDRLAQAQTTTGAVEVRQLASDFNGLTKANQVLQDQQGLVLLSQQ
                     LVIDVARAVQTAEGIDEAMQVACAMLGEGLGGDRVLLYIHDEDGQAKQRAQWRRYDLP
                     TLPPLPPSLAQEVRVVTDELRRDVSVFAAADFLASEVQAEDRAQRFYRATG"
BASE COUNT          232 a          586 c          608 g          274 t
ORIGIN      
        1 acgacggccg cgactatcgg gtggcgttcg tgcccgaacc ggtctgctgg accgaggtgc
       61 cctcgacctt ccgggtgctg cgcagccagc gcagccgttg gcaccgcggc ctgtgggaga
      121 ccctctgggc ctaccgcggc atggtgctgc gaccgcgata tggccgggtc ggcatggtcg
      181 cgttgccgta ctactggctg ttcgagctgg tcgcgccgct cctcgaggcg ttcggcatct
      241 tcatcgtttc gctcgcgctg ttgctcgggg tcgtcaacct cccgtttgcc atcctcttcc
      301 tcctgctggc gtacggcttc gccatcctcg tgacgctctc ggccctggcc gtcgaggagt
      361 gggcctatca ccggcacgag cggtggcgcg acctggcgat gatcgtgctc gcccccgtcg
      421 tggagaacat cggctaccgg cagctgacgg tggtctggcg gctgcagggc tggtgggcca
      481 gcctgcgcaa caagaagcag gtgtggggag tcatgactcg caccggcttc gacgaggcca
      541 gcccgtgacg ccgctggccg acagatcggt gtcgacccag ctgaaggtgc tcggcatcgc
      601 gctcctgctg ctggttcctg gcgtgggcct cgctgcggtc tccacgctgg tctcgcaggg
      661 tcacgccatc caggcgctga cgttggccct ggggccggcc ttcgacgcca acaacgcggc
      721 cctgatcgac atgacggcgg ccaacgcctc atggagccag atcatgggcg gttcgacgcc
      781 cctgtcgggg tacagcacgc gacggaccca ggtggagtcc gagctgaccg tgctgcagac
      841 cgccgtcgcc tcgccgaccc tcacggcgga cgaccaccgg cggttcggca cgctgatcag
      901 ccagcagcgg gccgcggttg acgcgtggtt cacggccgcg ctccaggcgc agaacctcaa
      961 ggacggcccc ccgggcggaa agagcgccgc tgccgcgcag gccatcagca cgttccgggt
     1021 gttcagcgac accaaccacg acctcggcga gcagatccgc gtcgagcgcg acgaggcgcg
     1081 gaagggttcg agggtctccc tcgaactggt gggcgccgtc gttgcggcgt ccagtctgct
     1141 ggccatgggc atcgtggtgt ccgggtggcg cctgttggag cgctcggtga gtggcccgct
     1201 ggagcgcctg cggctggtgc tcgagcgcca gagagacggg gaccggctgg cccaggctca
     1261 gaccaccaca ggtgcggtcg aggtgcggca gctcgcctcc gacttcaacg gcctcaccaa
     1321 ggccaaccag gtcctccagg accagcaggg tctggtcctg ctgtcccagc agctcgtgat
     1381 cgacgtggcg cgcgccgtcc agaccgccga aggcatcgac gaggcgatgc aggtcgcctg
     1441 cgccatgctc ggggaggggt tgggcggcga ccgcgtgctg ctctacatcc acgacgaaga
     1501 cgggcaggcc aagcagcgcg cgcagtggcg gcggtacgac ctgcccaccc tgcccccgct
     1561 gccgccctcg ctggctcagg aggtgcgggt ggtcaccgac gagctgcgtc gagacgtgtc
     1621 ggtcttcgcg gcggcggact tcctggcctc cgaggtccag gcggaggacc gggctcagcg
     1681 cttctaccgg gccacgggcg
//
LOCUS       DASYFY010000126         3010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1323353, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000126 DASYFY010000000
VERSION     DASYFY010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1323353"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..490
                     /locus_tag="VGN19_02385"
     CDS             <1..490
                     /locus_tag="VGN19_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEV7194763.1"
                     /translation="GYEKHIRMLKDAHFMSIADRSILACWGVKGGKAGMPFSVTVDLG
                     GPDERVVDALADAEPVKAGQVIRIRTTGGGGWGDPLERPYDEVERDLRWGKVSFEGAR
                     AAYGVVASGTKDNPVVGVAASDALRAELRAARPAKEPFFDRGPGYARLADGKDAADVD
                     WL"
     gene            499..1701
                     /locus_tag="VGN19_02390"
     CDS             499..1701
                     /locus_tag="VGN19_02390"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEV7194764.1"
                     /translation="MNAPLDDIVVIDLSRALAGPHAAMMLGDMGARVIKVETPRTGDD
                     TRGWGPPFVGPEDDPISTYFLSANRNKESLTLDLKSDDGRDILTRLVRRGDVLIENFR
                     PGVLDRLGFTTQRLHELNPRLVVLSISGFGHDGPEGGRAGYDQIAQGEAGLMSLTGPD
                     ADTPQRVGVPIGDLLAGMYGAYGVVTALHERASTGRGRVVRTSLLAAIVGAHAFQGTR
                     YTVAGEVGQAQGNHHPSLSPYGLFHCLDGDIQVACGSEALWVTLATAFGIDPAGEGMA
                     TNRQRTINRDEVTAALNAAFAAYPLAELLPRLAELGIPAGEVRTLDRVYDWEQTRSQG
                     LVIDVDHPVLGRIEIPGPPIRLDDNLYAGGRAEHLAPPLLGQHNDSIRGWLDELDQVD
                     ATEDGSAG"
     gene            complement(1750..2940)
                     /locus_tag="VGN19_02395"
     CDS             complement(1750..2940)
                     /locus_tag="VGN19_02395"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HEV7194765.1"
                     /translation="MVERRLVPKRSGKSDPTAHLTAEDVEALAMELDDLRQEVLASRG
                     AGDAAYIRKVIGVQRKVELASRAVLLFSIFPPAWIIGTAGLSVAKILDNMEVGHNILH
                     GQWDWMRDPKIHSTTWEWDSATPAELWKHSHNELHHTYTNVLGKDNDLGYGIMRVDED
                     QRWVPAYLGQPIYNFLNMCFFQYGIAAYDLEIGKQLAGRGDKETFRRNGKKVLNKVGR
                     QARKDYLIHPLLSGPSFFHTMAANATANFVRNVWTHSIIMCGHFPAGVETFARASIEG
                     ESRGEWYLRQMLGSANISGSKTLHLMSGNLSHQIEHHLFPDLPSNRYGEIAPRVQEIC
                     ERYGLTYTTGPLYKQVASAWGQVISLSLPNPQPGRNRLGIAAEAIGKQVRRSLRNRRP
                     VRTA"
BASE COUNT          441 a         1011 c         1087 g          471 t
ORIGIN      
        1 tggctacgag aagcacatcc ggatgctcaa ggacgcccac ttcatgtcca tcgccgaccg
       61 ctcgatcctc gcctgctggg gcgtcaaggg cggcaaggcc ggtatgccgt tcagcgtcac
      121 cgtcgatctc ggcggccccg atgagcgggt ggtcgacgcc ctggccgacg cggagccggt
      181 caaggccggc caggtgatcc gcatccggac caccggtggc ggcggttggg gcgacccgct
      241 cgagcgcccc tacgacgagg tcgagcggga cctgcgctgg ggcaaggtgt cgttcgaagg
      301 ggcacgcgcg gcctacggcg tcgtcgcctc cgggaccaag gacaacccgg tcgtcggcgt
      361 ggccgcctcg gacgcgctgc gcgcggagct acgcgcggcc cggccggcca aggagccgtt
      421 cttcgaccgc gggcccggtt acgctcgcct cgccgacggc aaggatgccg ccgacgtcga
      481 ctggctctga ggagactggt gaacgcaccg ctcgacgaca tcgtcgtcat cgacctctct
      541 cgcgccctgg ccggacccca cgcggcaatg atgctgggag acatgggtgc tcgcgtcatc
      601 aaggtcgaga ctccgcgcac tggcgacgac acccgtggtt ggggtccgcc tttcgtgggg
      661 cccgaggacg acccgatctc gacgtacttc ctatcggcca accgcaacaa ggagtcgctc
      721 accctcgacc tcaagtcgga cgacggccgc gacatcctca cccgactggt gcgtcgtggc
      781 gacgtgctca tcgagaactt ccggccgggc gtgctcgacc ggctcggctt caccacccag
      841 cggctgcacg agctcaaccc cagactggtg gtgctgtcga tcagcggttt cggccatgac
      901 gggccggagg gcggccgagc cggctacgac cagatcgcgc agggcgaggc cggactgatg
      961 tccctgaccg gacccgacgc cgacaccccc caacgggtcg gcgtgccgat cggcgacctg
     1021 ctggccggga tgtacggcgc ctacggggtg gtgaccgcgc tgcacgagcg cgccagcacc
     1081 ggacggggcc gggtggtccg cacctcgctg ctggccgcca tcgtcggcgc ccacgcgttc
     1141 cagggcaccc gctacaccgt ggccggcgag gtcgggcagg cgcagggaaa ccaccacccg
     1201 tcactgtcgc cgtacggcct gttccactgc ctcgacggcg acatccaggt ggcctgtggg
     1261 agcgaggcgc tgtgggtcac gctcgccacg gcgttcggga tagacccggc gggcgagggc
     1321 atggccacca accgccagcg caccatcaac cgggacgagg tgacggccgc cctcaacgcc
     1381 gcgttcgcgg catacccgct cgcggagctt ctcccccggt tggccgagct gggcatcccg
     1441 gccggggagg tccgcaccct cgaccgggtc tacgactggg agcagacccg atcgcaaggg
     1501 ctggtcatcg acgtcgacca ccccgtgctg ggtcggatcg agattccagg cccgccgatc
     1561 cggctcgacg acaacctgta tgccggcggc cgggccgagc acctcgcccc gcccttgctg
     1621 ggccagcaca acgacagcat ccgggggtgg cttgacgagc tcgaccaggt cgacgcgacc
     1681 gaggacggca gcgcgggctg accagcccac cctgccgtcc tcgggtcgtg agttgttgcg
     1741 cctaggcggt caggcggtgc gcaccgggcg ccggttgcgc agcgagcgcc gcacctgctt
     1801 gccgatcgcc tcagccgcga tgcccaggcg gttgcgtccg ggctgcgggt tcggcagcga
     1861 cagcgagatg acctggcccc acgcggacgc gacctgcttg tagagcgggc cagtggtgta
     1921 cgtcaggccg taacgctcgc agatctcctg cacccgcggg gcgatctcgc cgtagcggtt
     1981 gctcgggagg tcggggaaca ggtggtgctc gatctggtgg ctcaggttgc cgctcatgag
     2041 gtgcagggtc ttactgcccg agatgttggc ggagcccagc atctggcgca ggtaccactc
     2101 gccacggctc tcgccctcga tggacgcgcg ggcgaaggtc tcgacgccgg cggggaagtg
     2161 gccgcacatg atgatcgagt gcgtccagac gttgcggacg aagttggcgg tcgcgttggc
     2221 agccatggtg tggaagaacg acggacccga cagcaggggg tggatcaggt agtccttgcg
     2281 ggcctggcgc ccgaccttgt tcagcacctt cttgccgttg cgacggaacg tctccttgtc
     2341 accgcggccg gcgagctgct tgccgatctc gaggtcgtag gcggcgatgc cgtactggaa
     2401 gaagcacatg ttgaggaagt tgtagatcgg ctggccgagg tacgccggca cccagcgctg
     2461 gtcctcgtcg acgcgcatga tgccgtagcc gagatcgttg tccttgccca gcacgttcgt
     2521 gtaggtgtgg tgcagctcgt tgtggctgtg cttccacagc tcggcgggcg tggcgctgtc
     2581 ccactcccag gtggtggagt ggatcttggg gtcgcgcatc cagtcccact ggccgtggag
     2641 gatgttgtgg ccgacctcca tgttgtccag gatcttggcg acggacagac cggcggtgcc
     2701 gatgatccag gccggcggga agatcgagaa cagcagcacg gcccggctcg cgagctcgac
     2761 cttgcgctgc acaccgatga ccttgcggat gtatgccgcg tcgccggccc cgcgcgaggc
     2821 gaggacttcc tggcgcaggt cgtcgagctc catggccagg gcctcgacgt cctcggcggt
     2881 caggtgcgcg gtcgggtcgg acttgccgga gcgcttcggg acgaggcggc gctcgacgat
     2941 ggcggtggac aggcggctgt tcgtggtgcg cgccgagggc gttccgggtg ccttgggggt
     3001 ggaggcagcg
//
LOCUS       DASYFY010000127         3125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_61137, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000127 DASYFY010000000
VERSION     DASYFY010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61137"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VGN19_02400"
     CDS             <1..296
                     /locus_tag="VGN19_02400"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEV7194766.1"
                     /translation="PMHGNTFESASGYKTRDFEDVVEEVRGFFEVHKGLGTVPGGIHV
                     ELTGNDVTECIGGAEKILDADLNKRYETVCDPRLNHQQSLELAFLVAEMLAKD"
     gene            310..1374
                     /locus_tag="VGN19_02405"
     CDS             310..1374
                     /locus_tag="VGN19_02405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntG family PLP-dependent aldolase"
                     /protein_id="HEV7194767.1"
                     /translation="MTDSGTPVDLLSDTVTKPTEAMRQAMAGAPVGDDVFGEDPTVRL
                     LEARVAELLGHEDALFAPTGSMANQLCLRLHVGHGEELIADSLAHVLRAEMGAAAVLS
                     GISSRSWVADHGLLDARQPLALMIPDGGAYQVNTRLVVVENTHNFGGGTIQPLHQIEL
                     LRAGTQPRGVAMHLDGARLWNAHVATGVSLEAYGRLFDTVSVCLSKGLGAPVGSVIAG
                     SRDRMQEARLWRKRFGGGMRQVGILAAAGLHALDHHLARLVDDHARARRFADAAAKAC
                     PDSLDAERVQTNIVIMDVSASGWSSGAFVDEAARRGIRLYAVSPTSVRLVWHLDVDDE
                     GTDLAVEALVPLLENGPHTS"
     gene            complement(1362..2276)
                     /locus_tag="VGN19_02410"
     CDS             complement(1362..2276)
                     /locus_tag="VGN19_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEV7194768.1"
                     /translation="MRSRLPASRLATLLLLSVTAVWGSTFFLIRDLVAHVPPADFLAV
                     RFAIAAVVMAGFFRRQTLALSRREVLVGVGLGVLYGLAQLLQTMGLQHTDASVSGFVT
                     GTYVVLTPVFGAVLLRDRIPRTTWYAVALATIGLAALSLRGLSVGLGEGLTLAAAALY
                     ALHIIGLGRYSTASSANGLATVQAFTITAVAATAALPDGITLPSTRSQWASLLYMALI
                     AGAVALWAQTWAQSHLPATRAAIVMTMEPVFAALFAVVFGGESLTARMLVGGALVLAA
                     MYVVELVGRRSEASAEQDRPAELLHHEV"
     gene            complement(2282..>3125)
                     /locus_tag="VGN19_02415"
     CDS             complement(2282..>3125)
                     /locus_tag="VGN19_02415"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEV7194769.1"
                     /translation="ALLAGLTAWYFLAGPGSPTVVPSTIGMTYAKARAALTARHLDPV
                     KVDSFQESVPIGQVVATDPVAGRQVGRGTEVTVTVSKGPERYAVPDVVGKSQAEATDQ
                     LTATKLTLGTVTQAYSDTVPQGLVVSADPVVGTSLKRGAPVNLVVSKGRQPIPVTDFT
                     GKPASMAVDALTTAGLKVDATQQENSDTVPKGSVIRQSPSGGSLYRGDQVTLVVSKGP
                     VMVAVPDVTGKQADEAQKILEAAGFQVQRQTVLGGLFGTVHHTDPAAGSQAPKGSTVV
                     MVIV"
BASE COUNT          508 a         1036 c         1116 g          465 t
ORIGIN      
        1 acccgatgca cggcaacacc ttcgagtcgg ccagtggtta caagacccgg gacttcgagg
       61 atgtcgtgga ggaggtgcgc gggttcttcg aggtgcacaa ggggctcggg acggtgcccg
      121 gtggcatcca cgtcgagctc accggcaacg acgtcaccga gtgcatcggt ggcgcggaga
      181 agattctcga cgccgacctg aacaagcgtt acgagacggt gtgcgaccct cgtctgaacc
      241 accagcagag cctggagctg gcgttcctgg ttgccgagat gctggccaag gactgaggca
      301 aggaccctga tgactgactc cggcaccccg gtcgacctgc tctccgacac cgtcaccaag
      361 ccgaccgagg ccatgcgtca ggccatggcg ggggcgccgg ttggcgacga cgtcttcggc
      421 gaggacccca ccgtccgtct gctggaggcg cgggtggccg agctcctcgg ccacgaggac
      481 gcgctcttcg cgcccacggg atccatggcc aaccagctgt gtctgcggct gcacgtgggc
      541 cacggcgagg agctcatcgc cgactcgctg gcccacgtgc tgcgtgccga gatgggtgcg
      601 gccgctgtgc tctccgggat ctcgtcgcgc tcctgggttg ccgaccacgg gctcctcgat
      661 gcacgccaac cccttgccct gatgatcccg gacggtggcg cgtaccaggt gaacactcgc
      721 ctggtggtcg tggagaacac ccacaacttc ggcggcggca ccatccagcc gctgcaccag
      781 atcgagctgc tgcgcgccgg cacccagccc cggggcgtcg caatgcacct cgatggggcg
      841 cgactctgga acgcccacgt cgccaccggg gtctccctgg aggcctacgg tcggctcttc
      901 gacacggtca gcgtctgcct gtccaagggg ctgggggcac cggtcggatc ggtcatcgcc
      961 ggctcgcgcg accggatgca ggaggcgcga ctgtggcgca aacggtttgg cggcggcatg
     1021 cggcaggtcg gcatcctggc cgcagcggga ctgcatgcgc tcgaccatca cctggcgcgg
     1081 ctggtggatg accacgcccg tgcgcgccgc ttcgccgacg ctgccgccaa agcctgcccc
     1141 gactcgcttg acgccgagcg agtccagacc aacatcgtga tcatggatgt gtcggcgtca
     1201 ggctggagct cgggcgcctt cgtggacgag gccgctcgcc gcggcatacg cctgtatgcc
     1261 gtgagcccca cctcggtgcg gctggtctgg cacctggacg tcgacgacga gggtacggac
     1321 ctggctgtcg aggcgctggt tccgttgctg gagaacggcc ctcacacttc gtgatgcagt
     1381 agttcggcgg ggcggtcctg ctcggcagag gcttctgacc ggcgtccgac gagctcgacg
     1441 acgtacatcg ccgcgaggac gagcgcgcct cctaccagca tccgcgccgt gagggactcg
     1501 ccaccgaaga cgaccgcgaa gagcgcggcg aagacgggtt ccatggtcat gacgatggcg
     1561 gcgcgggtcg ccggtagatg cgactgggcc caggtctgag cccacagggc gactgctccg
     1621 gcgatgagcg ccatgtacag cagggacgcc cactgacttc gggtcgacgg cagcgtgatg
     1681 ccgtcgggca gcgccgctgt cgcggcgacc gcggtgatcg tgaaggcctg caccgtggcc
     1741 agcccgttgg cggatgaggc agtcgagtac cggcccagac cgatgatgtg cagcgcgtac
     1801 aaggccgcgg cggcaagggt caggccctcg ccgagcccca ctgacagtcc gcgcagggac
     1861 aaggccgcga gcccgatcgt ggccagggcc accgcatacc aggtggtgcg gggaatgcga
     1921 tcgcgcagca gcaccgcccc gaacaccggg gtgaggacga cgtaggtccc ggtgacgaag
     1981 cccgacacgg acgcgtcggt gtgctgcagc cccatggtct gcaacagctg ggccaacccg
     2041 tacaggactc cgagccccac accgaccagc acctcacggc gcgacagcgc cagggtctgt
     2101 cgcctgaaga acccggccat gacgacggcg gcgatcgcga accggaccgc caggaagtcc
     2161 gcaggcggca catgggccac caggtccctg atcaggaaga acgtcgagcc ccacaccgcc
     2221 gtgacggaca gcaggaggag ggtggcaagc cggctggctg ggaggcggga ccgcacggac
     2281 gtcagacgat gaccatgacg acggtcgaac ccttgggggc ttgggagccg gcggcagggt
     2341 cggtgtgatg gacggttccg aacagtccgc cgagaacggt ttggcgctgc acctggaaac
     2401 cggccgcctc aaggatcttc tgggcctcgt cggcctgctt gccggtcacg tccggcacgg
     2461 cgaccatcac cggacccttg gacaccacga gggtgacctg gtcaccacga tagagcgagc
     2521 cgcccgaggg ggactgccgg atgacactgc ccttggggac cgtgtcgctg ttctcctgct
     2581 gggtcgcgtc gaccttgagc ccggcagtgg tgagcgcgtc cacggccatc gacgcgggct
     2641 tgccggtgaa gtcggtgacg gggatgggct gccgcccctt gctcaccacg aggttgaccg
     2701 gagcgccgcg cttgagcgac gtgccgacga cggggtcggc gctgaccacg aggccttggg
     2761 gcaccgtgtc gctgtaggcc tgggtcacgg tgccgagggt gagcttggtc gcggtgagct
     2821 ggtctgttgc ttcggcttgg gacttgccca cgacatcggg gacggcatag cgctctgggc
     2881 ccttggagac ggtgaccgtc acctcggtgc cacgaccgac ctgcctgccg gcaacaggat
     2941 ctgtcgccac gacctggccg atgggtacgg actcctggaa cgagtcgacc ttcacagggt
     3001 cgaggtgtct ggcggtcagc gctgctcgag ccttcgcata cgtcatcccg atcgtgctcg
     3061 ggaccacggt cggggatccg gggccggcca ggaagtacca cgcggtcagg ccggcgagca
     3121 gggca
//
LOCUS       DASYFY010000128         1554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1217926, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000128 DASYFY010000000
VERSION     DASYFY010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1217926"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..670
                     /locus_tag="VGN19_02420"
     CDS             <1..670
                     /locus_tag="VGN19_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEV7194770.1"
                     /translation="VVVTDGVFSMDGYLAPLDQICDLADEFGALVMVDDSHAVGFVGD
                     GGRGTPERFGVMDRVDILTGTLGKALGGASGGYVSAHQEIVDLLRQRSRPYLFSNAVA
                     PTVAAGSLRALEIAATSAQGRAQLQANTALFRELMTEAGFELLPGEHPITPVMFAGED
                     GARRATQMADTMLEHGVYVIAFSYPVVPQGRSRIRVQLSAAHTEDDVRACVAAFVQAR
                     TAVG"
     gene            682..1248
                     /locus_tag="VGN19_02425"
     CDS             682..1248
                     /locus_tag="VGN19_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013115591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7194771.1"
                     /translation="MARLRYSAITSLDGYVVDAQGRFDWAAPTEALHRLVNEDQRSIG
                     TYLYGRRMYEVMRYWDGPGPGTDESSPAAEYRRIWQAADKLVYSGTMTAVGTARTRLV
                     RRFDPHAVRQLLEDSHSDLGIGGPTLAAEALRAGLVDEISLYLTPVSVGGGTPALPFG
                     SRFDLRLREERNVGDVVVLRYAIGPVRD"
     gene            complement(1245..>1554)
                     /locus_tag="VGN19_02430"
     CDS             complement(1245..>1554)
                     /locus_tag="VGN19_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEV7194772.1"
                     /translation="PVELLLTAIAGCTAVDVDFITVKRAEPETFTVAASGEKLKDGQG
                     NHMGDLQVTFSVTFPEGEAGDRAREMLPKALAMSHDRLCTVSRTVELGTPVDSRLAAD
                     "
BASE COUNT          225 a          527 c          539 g          263 t
ORIGIN      
        1 cgtggtggtg accgacggcg tgttctcgat ggacggctat cttgctcccc tggaccagat
       61 ctgcgacctg gccgacgagt tcggtgcgct ggtcatggtc gacgacagcc atgcggtcgg
      121 cttcgtcgga gacggcggac gaggcacgcc cgaacgcttc ggggtcatgg accgcgtgga
      181 catcctgacc gggacgctgg ggaaggcctt gggtggcgcg tcaggcggct acgtcagcgc
      241 ccaccaggag atcgtcgacc tgctgcgtca gcggtcccgc ccttacctgt tctccaatgc
      301 ggtggcgccc acggtcgcgg caggatcgtt gcgcgcgttg gagatcgcgg ccacctcagc
      361 gcagggacgt gcccagctgc aggccaacac tgccctcttt cgtgagctga tgaccgaggc
      421 cggcttcgag ctccttccag gcgaacaccc catcaccccg gtgatgttcg ctggtgagga
      481 cggcgcacgt cgggccaccc agatggccga caccatgctc gagcacggtg tctatgtcat
      541 cgccttctcc tatccggtgg tgccgcaggg ccggtcccgc atccgggtgc agctctcggc
      601 agcccacacc gaggacgacg tccgggcgtg cgtggctgcc ttcgtccagg ctcggaccgc
      661 ggtcggctga caggagtggc tgtggcccgg ttgcgctact cggcgatcac ctcgctcgac
      721 ggctatgtcg tggacgcgca gggccgattc gactgggccg cgcccacgga ggccctccac
      781 cgtctggtca acgaggatca gcgcagcatc ggcacctacc tctacggccg gcgcatgtac
      841 gaggtcatgc gctactggga tggtccgggt cccggcaccg acgagtcttc ccccgcggcg
      901 gagtaccggc gaatctggca ggctgccgac aagctcgtgt actcaggcac catgacggcc
      961 gtcggcactg ctcgaacgcg cctggtccga cgcttcgacc cccacgccgt ccggcagctc
     1021 ttggaggaca gtcacagcga cctcggcatc ggcggcccaa ctctggcggc ggaggcgcta
     1081 cgcgccgggc tcgtggacga gatctcgctg tacctgacgc cggtgagcgt gggtggaggg
     1141 acccctgcct tgcccttcgg ctcgaggttc gacctgcgcc tccgggagga acggaatgtc
     1201 ggtgacgtgg tcgtgttgcg ttacgccatc ggaccagtac gggactagtc ggcggccaga
     1261 cggctgtcga ccggcgtgcc gagctccacg gtccgactga ccgtgcagag ccggtcgtgc
     1321 gacatcgcga gggccttggg cagcatctcg cgggcgcggt cgcccgcctc accctcgggg
     1381 aaggtcaccg agaaggtcac ctgcaggtcg cccatgtggt tgccctgccc gtccttgagc
     1441 ttctcaccgg aggcggccac ggtgaacgtc tccggctcgg cacgcttgac cgtgatgaag
     1501 tcgacgtcga cggcggtgca gcccgcgatg gcggtcagca gcagctcgac cggg
//
LOCUS       DASYFY010000129         1614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1218039, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000129 DASYFY010000000
VERSION     DASYFY010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1218039"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VGN19_02435"
     CDS             <1..206
                     /locus_tag="VGN19_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194773.1"
                     /translation="DHQLRDPRSRAEDRLREATRHYERHVLGWYAMGRPAEAARARAD
                     ILTHRQALDYELAEVSDSHPGVR"
     gene            342..809
                     /locus_tag="VGN19_02440"
     CDS             342..809
                     /locus_tag="VGN19_02440"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7194774.1"
                     /translation="MAQWTAQTRLNAYPDEVLMLLTEPDAISRWAPIAFDVVDWDGHR
                     LMAGDRVRVEGQLVGRRLEFEVDVDQAHDGRLALTAHGAIRLDVEYEALELDDGSELH
                     AAVTVSGGGFIGRVLAQATDALLAAGALRLALERISRQLDREYEFGLEPALAA"
     gene            complement(927..>1614)
                     /locus_tag="VGN19_02445"
     CDS             complement(927..>1614)
                     /locus_tag="VGN19_02445"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEV7194775.1"
                     /translation="GHLSRFVEPGAVRIASTSFGTTGWNGEVMDVAFRNPDGTTVLVA
                     HNENDSPQVVGVREGNDGFTYTLPGDSLATFTWPGNPGGTQGLRELNPSGWQASANPP
                     GPTNPCCQGDVASHAIDDDASTRYSTGTGQAPGQYLQIDLGRLEPLRQIVYDTGINLG
                     DYPRGYTVTVSSDGINWTTAVTGSGTGQFTTVPLSGARIRYVRLTLTDSSGSWWSVAD
                     VRAYVANHQR"
BASE COUNT          226 a          539 c          595 g          254 t
ORIGIN      
        1 ccgatcacca gctgcgggac ccgcgctccc gggccgagga tcgcctgcgc gaggccacgc
       61 gacattacga gcgtcacgtg ctgggctggt acgcgatggg tcggccggcc gaggccgcgc
      121 gcgcccgcgc ggacatcctc acccaccgcc aggcgctcga ctacgagctg gctgaggtgt
      181 cggactctca ccctggggtg cggtgactca gcgattagtt cgccataggg tccgggtcat
      241 gaagagcatg aggagtgaga gggagatggg caggattggc gacagagccg acgtgacaaa
      301 tgtcacaacg tcgcgcactg acgggtgtga gggttagcgc tatggctcag tggaccgcgc
      361 agactcgcct caacgcctat cccgacgagg tcctgatgct gctgaccgag cccgacgcga
      421 tctcgcgctg ggcgccgatc gccttcgatg tcgtcgactg ggatggacac cgcctgatgg
      481 ccggcgaccg cgtccgggtc gagggacagt tggtcggccg gcggctcgaa ttcgaagtcg
      541 acgtcgacca ggctcacgac ggtcgcctgg ccctcaccgc ccacggcgcg atccgtctcg
      601 acgtcgagta cgaggcgctc gagctcgacg acggcagcga gctgcacgcg gcggtcacgg
      661 tctccggcgg cggcttcatc ggtcgagtcc tggcccaggc gaccgacgcg ctgctggccg
      721 ccggcgctct gcggctggcg ctggagcgga tcagccgcca gctcgaccgc gagtacgagt
      781 tcgggctcga gcccgcgctg gccgcctgag ctgggccgcg cccgcgtgac ctgagccccg
      841 cccgcctgac ctgcgcgccg cccgcctgag tcgagcgccg gtccgggccc agcaccaatc
      901 tgtgcgggcc cgggcggcgt agcggtctag cgctggtggt tggcgacgta ggctcgtacg
      961 tcggccacgc tccaccaact cccgctcgag tcggtcaggg tgaggcgcac gtatcgaatg
     1021 cgggctccgc tcaggggaac cgtcgtgaac tgtccggtgc ccgagccggt gaccgccgtg
     1081 gtccagttga tgccgtcgga gctgaccgtc acggtgtagc cacgcgggta gtcaccgagg
     1141 ttgatgccgg tgtcgtagac gatctgacgc aggggctcca ggcggccgag gtcgatctgc
     1201 agatactggc cgggagcctg cccggtgccg gtcgagtacc gggtgctcgc gtcgtcgtcg
     1261 atcgcatggc tggccacgtc accctgacag cacgggttgg tcgggccggg cgggttggcg
     1321 ctggcctgcc agccggatgg gttcagctcc cggaggccct gggtgccgcc gggattgccg
     1381 ggccaggtga aggtggccag cgagtcgccc ggcagcgtgt aggtgaagcc gtcgttgccc
     1441 tcgcgcacgc cgacgacctg ggggctgtcg ttctcgttgt gggccaccag caccgtggtg
     1501 ccgtcgggat tgcggaaggc cacgtccatg acctccccgt tccagcccgt ggtgccgaac
     1561 gaggtgctgg cgatccggac cgcgcccggt tctacgaagc ggctcaggtg accg
//
LOCUS       DASYFY010000130         1658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1690655, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000130 DASYFY010000000
VERSION     DASYFY010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1690655"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1622)
                     /locus_tag="VGN19_02450"
     CDS             complement(<1..1622)
                     /locus_tag="VGN19_02450"
                     /inference="COORDINATES: protein motif:HMM:NF023326.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HEV7194776.1"
                     /translation="MCRTEFLHYLRVREWQDLHSQMRKACQDLGIDPRRGTAAPGEDP
                     NADVVHQALLAGLLSHVGLRDEAKRDYLGARGARFAISPGSTLFRRQPTWVMSAELME
                     TSRLWARTNARIDPAWAERLGDHLVKRTYSEPRWSRKQGAVVATERVALFGVPLVAAR
                     TVQYARINPEESRDLFIRHALVEGDWDSHHDFVKANQALLQHLSELEERARRRDIVVD
                     DEDLVAFFDARIPPDVVSQRHFDRWWKGARRETPQLLTFTEELLTRDTAGDVSATDYP
                     RVWRQGGLELAVTYQFEPGAAADGVTVHLPLQVLNQVVEEGFDWQVPGLRQDLATALL
                     RSLPKTTRVHLVPAPDHAARALGDVQPGAGRRLADELARVLRAQSGVAVSAGQFAPER
                     VPDHLRITFSVEDGTGRPVAAGKDLGELQGRLAGQVQRRLSHAGSSIERKGLRQWDFG
                     SLPTSFESDSGGQRVQGFPALVDRGDCVDLMVMAGEREAQAASALGVRRLLLLNTSAP
                     WKRVLARLTNPQKLALGDNPHGSVPALLEDALA"
BASE COUNT          255 a          588 c          567 g          248 t
ORIGIN      
        1 gccagcgcgt cctcgagcag agcggggacg gagccgtgtg ggttgtcgcc gagggccagc
       61 ttctgcgggt tggtcagccg tgcgaggacc cgcttccacg gcgcgctggt gttcaggagc
      121 aggagccgtc ggacgccgag tgcggacgct gcctgcgcct cccgctcccc ggccatcacc
      181 atcaggtcga cgcagtcgcc gcggtcgacc agcgccggaa acccttgcac gcgctgcccg
      241 cccgagtccg actcgaacga ggtcgggagt gaaccgaagt cccactgccg caaacccttt
      301 cgctcgatcg acgaaccggc atgcgacagg cgacgctgga cctgaccggc cagccgacct
      361 tggagctcac cgaggtcctt gccggcggcg accggccgac cggtgccgtc ctcgacactg
      421 aaggtgatcc gcagatggtc cggcacgcgc tcgggagcga actggcccgc tgacaccgcc
      481 accccgctct gggctcggag cactcgggcc agctcgtcgg cgagccgtcg cccagccccc
      541 ggctgaacgt ccccgagggc gcgcgccgcg tggtccgggg cgggcaccag gtgcacgcgg
      601 gtcgtcttgg gtaaagacct gagcaaggcc gtggcgaggt cctgacgcag cccgggcacc
      661 tgccagtcga acccctcctc cacgacctgg ttgaggacct gcagcggaag gtgcacggtc
      721 acgccgtctg cggcagcacc tggttcgaac tggtaggtga cggcgagctc gagtccgccc
      781 tgtcgccaca cccgcgggta gtccgtggcg gacacgtctc cagcagtgtc ccgcgtcagg
      841 agctcctcgg tgaacgtgag cagctgcggg gtctcccgcc gtgccccctt ccaccagcgg
      901 tcgaagtggc gctgcgacac gacgtccggg gggatcctgg cgtcgaagaa ggccaccaga
      961 tcctcgtcgt cgaccacgat gtcacgccgt cgcgcacgtt cctcgagctc cgacaggtgc
     1021 tgcaggagag cctggttggc cttgacgaag tcgtgatggc tgtcccaatc cccttcgacc
     1081 agcgcatgcc ggatgaacag gtcacgagac tcctcggggt tgatccgggc gtactgcacg
     1141 gtgcgggcgg cgaccagcgg caccccgaac agcgcgaccc gttcggtagc tacgacggcg
     1201 ccctgcttgc gtgaccaccg aggctccgag taggtccgct tgaccagatg gtcacccagg
     1261 cgctcggccc aggccgggtc gatccgcgcg ttggtgcggg cccacagccg actcgtctcc
     1321 atcagctccg ccgacatcac ccaggtgggc tggcgtcgaa acagggtcga ccccggcgag
     1381 atcgcgaacc gtgcccccct cgctccgaga tagtcgcgct tggcctcgtc gcgcagcccg
     1441 acgtgcgaga gcagcccggc cagcagcgcc tgatggacga cgtcggcatt cgggtcttcc
     1501 cccggtgcgg cggtgccacg gcgcgggtcg atgccgagat cctggcacgc cttgcgcatc
     1561 tgggaatgca ggtcctgcca ttcgcggacc cgcaggtagt gcaggaactc agtccggcac
     1621 attcggcgaa aagcgctgtg ggacagggcc ttctgttg
//
LOCUS       DASYFY010000131         2568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_850445, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000131 DASYFY010000000
VERSION     DASYFY010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_850445"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VGN19_02455"
     CDS             <1..875
                     /locus_tag="VGN19_02455"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heparinase II/III-family protein"
                     /protein_id="HEV7194777.1"
                     /translation="VLGPRSWWPTVSPTVAGAALGELTSYRELSGRPDAAVVSFPDAG
                     MFILRTPAGDDREIWCRCDGGPHGFLSIAAHAHADALSVEVRSKGVDLLVDPGTYCYH
                     GEPAWRSYFRSTLAHNTIEVDGANQSVEGGPFLWSSCTDAVVDRVELGQRVQTWSGHH
                     WGYARLDAQLRLDRSVAVDPDQRTVTVTDTLTGAARHTLRLAWQIGPEVRVSLTGGVA
                     RLAWLEDSTPRSGLLRLPEQLTWSAHSGETDPILGWYSPRFGERVPATTLIGTGTWNG
                     VLRLQTVLDLADDA"
     gene            1003..>2568
                     /locus_tag="VGN19_02460"
     CDS             1003..>2568
                     /locus_tag="VGN19_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194778.1"
                     /translation="MSEQIIDLRSTWAIMRRRGGTLILAASVGALAGGAAVYLRPPEY
                     SSQSIVLLPPAAQGSSSAAPSHSVDTQVQIAGSEAVLGPAGRAVTPPLSTAQVSSRVT
                     IEAPTTESLNITATGTTPKQAEALAEAVATAEVSYLKSAASTLTEDARKALTARANTL
                     KDSLASVNGEIKKTQARLTGESLSSVAGRADAAALAELTAQQANLVLQIDQIAKQTGA
                     DTQSSGQSGGGASVIQHAAPAVRMNLLVRLALFETIGAAAMLCLVGFVIVLRSRREHT
                     MRSRDQISDAVGIPVVASIQSRAPRSVAGWTTLLQGYAPDNVEMWTLRQLLRLVTPGH
                     PGSLAEDSETAVESPSVVVLTLSDDVRALAVGPQFASFAASTGLSTCLVASQPHESAN
                     ALWAACSGLPPDAQPRPGLSVESRNHAGYTGDLVVHVAVMDRLRPALHVRGAGQAVIL
                     LAVSAGGATADDLARVALAADDAGHPIARIIVVDPDPLDRTTGRLLPTERAAQVPLPS
                     LMTGTVISGEATAL"
BASE COUNT          381 a          934 c          872 g          381 t
ORIGIN      
        1 ccgtcctggg gccccgcagc tggtggccca cggtcagccc caccgtcgcg ggcgctgcgc
       61 tcggagagct gacgtcgtac cgcgagctgt ccgggcgccc ggatgcggcc gtggtgtcct
      121 tccccgacgc aggcatgttc atcctgcgca cgcctgcagg ggacgaccgc gagatctggt
      181 gccgatgtga cggggggccg cacgggttcc tgtcgatcgc cgcgcatgct catgccgatg
      241 ccctgtccgt cgaggtccgc agcaagggtg tcgacctcct ggtggacccg gggacgtact
      301 gctaccacgg cgaacctgcg tggcggagct acttccgctc gacgttggcc cacaacacga
      361 tcgaggttga cggcgccaac cagtccgtcg agggcggccc ctttctctgg agcagctgca
      421 ccgatgccgt cgtcgaccgg gtcgagctgg gacaaagggt ccagacgtgg tcaggacacc
      481 actgggggta cgcgcgcctc gatgcgcagc tgcgcctcga ccgcagcgtc gccgttgacc
      541 cggaccagcg cacggtcacc gtgacagaca ccctcacggg ggccgcgcgg cataccctgc
      601 gccttgcctg gcagatcggt ccggaggtac gagtgtccct cacgggcgga gtcgcccggc
      661 tcgcctggct cgaggactcc accccgcgca gtgggctgct gcggttgccg gagcagctga
      721 cctggtcggc gcacagtggc gagaccgatc ccatcctcgg gtggtactcg ccgcggttcg
      781 gcgaacgggt ccccgcaacc accctcattg gcaccgggac gtggaacggc gtcctgcgtc
      841 tgcagaccgt actcgacctc gcggacgacg catgagcgac gaacggcgca gcaggcctca
      901 accctctggt caggcagcgg tccgatctcg gcgttccggg ccggccgccg aggtgccagg
      961 tctagctttg gaacaccgcc gaattggccc gcagggggac agatgagcga gcagatcatc
     1021 gatctgaggt ccacgtgggc gatcatgcgt cgccgcggtg gcaccctgat cctcgccgca
     1081 tccgtcggtg cgctcgccgg aggcgccgcg gtctacctgc ggccgccgga gtacagcagc
     1141 cagagcatcg tcctcctgcc cccagctgcc caggggtcga gcagcgcagc gcccagtcac
     1201 agtgtcgaca cgcaggtgca gatcgccggg agcgaggccg tcctcggacc ggcgggccgg
     1261 gcagtgaccc cacccctcag cacggcgcag gtctcgagtc gggtcaccat cgaggctccg
     1321 acgacggagt cgctgaacat cacggccacc ggaacgaccc cgaaacaggc ggaggctctg
     1381 gcggaagccg tcgcgacggc ggaggtcagc tacctcaagt cggcagccag cacgctcacg
     1441 gaggatgcgc gaaaggcctt gaccgccagg gcgaacacgc tcaaggacag cctggcgtcc
     1501 gtgaacggcg agatcaagaa gacgcaggcc cgcctgactg gcgagagcct ctcgtccgtc
     1561 gccggtaggg cggacgccgc cgccctggcc gagctcacgg cccagcaggc caacctcgtc
     1621 ctccagatcg accagatcgc gaagcagaca ggtgcggaca cgcagtcctc cggccagtcc
     1681 ggcggcggcg cgtcggtgat ccagcatgcg gcccctgccg ttcgcatgaa cctgctcgtg
     1741 cgccttgccc tgttcgagac catcggcgcc gcagcgatgc tgtgcctcgt cggtttcgtc
     1801 atcgtgctcc gcagtcgacg ggagcacacc atgcgctcgc gcgaccagat ctcggatgcc
     1861 gtcggcatcc cggtcgtggc gtcgatccag agccgcgccc cacgttcggt cgcggggtgg
     1921 accaccctgc tgcagggcta cgcgccggac aacgtggaga tgtggaccct gcgccagctc
     1981 ctgcgactcg tcacaccggg gcatccggga agcctcgccg aggactctga gacagccgtc
     2041 gagtcaccga gcgtcgtggt cctcaccctg tccgacgacg tccgggcgct ggcggtcggt
     2101 cctcagttcg cctcgttcgc ggcctcgacc ggcctgagca cgtgcctcgt tgcctcccag
     2161 ccgcacgagt cggcgaatgc cctgtgggcg gcgtgttccg gactgccccc ggatgcccag
     2221 ccgcgtcctg gcctgtcggt cgaaagccgg aaccacgccg gctacacagg tgacctcgtc
     2281 gtccatgttg cggtcatgga ccgcctccgt cccgccctgc acgttcgcgg cgcgggccag
     2341 gcagtgatcc tgctcgccgt ctcggcgggt ggcgcgacgg ccgacgacct ggccagggtt
     2401 gccctcgctg ctgacgacgc gggacacccc atcgcccgca tcatcgtcgt cgacccggac
     2461 ccgctcgacc ggaccacggg tcgcctcctg ccgaccgagc gggccgcgca ggtccccttg
     2521 ccgtcgctga tgacgggcac cgtcatctcg ggtgaggcga ccgcgctt
//
LOCUS       DASYFY010000132         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_61302, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000132 DASYFY010000000
VERSION     DASYFY010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61302"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..749
                     /locus_tag="VGN19_02465"
     CDS             <1..749
                     /locus_tag="VGN19_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019136597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEV7194779.1"
                     /translation="GPWEAKALREVIDATLASFAPMGIPSTWVLTSHDETRPVTRYGR
                     TTTSSYFITDGEGEVPDLELGTRRARAAAMLMLALPGGSYIYQGEELGLPNVDDLPDE
                     VLQDPMFLRSGGEMRGRDGCRVPLPWSGTEPPFGFSPAGVEPWLPQPASWASLTVERE
                     HRDPTSMLALYREVLRIRRSTPGLSTAGLAWRESAHGVLDFDRGAVLRCVVNLDGEPP
                     ALDPSQVVVSSIPLEDGRLPRDAAAWLRPA"
     gene            765..1547
                     /locus_tag="VGN19_02470"
     CDS             765..1547
                     /locus_tag="VGN19_02470"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7194780.1"
                     /translation="MSTSQVGADEAQDSMRAEFDTFAAWTTAALQSLGARYAVPAACR
                     GSGTPAALSWLLDALRVPRGEPLLDIGAGLGGPAAYAQRQHGVRPVCVDPMPQACLGA
                     LDLFGLDVVQAEAGRMPFADNSFRHAWSLGTLCTTPDRVGWLAEWGRVLTRGARLGAM
                     VLVSTDAPFATSRGNVFPDLPELDRLWAGAGFYPVRQRWTRRLPQAGAEWREAEDRVA
                     QRIWEVHGEDPRYALVQAQQRTLGQLIRSGRVRGLLVVLARA"
BASE COUNT          237 a          664 c          707 g          287 t
ORIGIN      
        1 agggcccctg ggaggcgaag gcgctccgcg aggtcatcga cgcgaccctg gcctcctttg
       61 cgccgatggg tattccgtcg acctgggtgc tcacgagcca cgacgagacc aggccggtga
      121 cccgctacgg gcgcacgacc acgagctcgt acttcatcac cgacggcgag ggtgaggtgc
      181 cggacctcga gctgggcacg cgacgcgccc gtgccgccgc catgctgatg ctggctctgc
      241 ccggtggctc gtacatctac cagggcgagg agctgggcct gcccaacgtc gacgacctgc
      301 cggacgaggt cctgcaggac ccgatgttcc tgcgcagcgg cggcgagatg cggggccgtg
      361 acggctgccg cgtgccgctc ccgtggagtg gcacggagcc gcccttcggc ttctcgcccg
      421 ccggggtcga gccctggctt ccgcagccgg cctcctgggc gagtctcacg gtggagcggg
      481 agcatcggga ccccacctcg atgctggccc tctaccgaga ggtgctgcgg atccggcggt
      541 cgacaccggg gttgtcgacc gcgggactgg cctggcgcga gtcggcccac ggggtactcg
      601 acttcgaccg gggcgccgtg ctccgctgcg tggtcaacct cgatggtgag cctccggccc
      661 tcgacccctc gcaggtggtc gtcagcagca ttccgctcga ggacggacga cttcccaggg
      721 acgccgccgc ctggctgcgc cccgcctgag cgagcgccac agcgatgagc acgagccagg
      781 tcggcgccga cgaggcccag gacagcatgc gggcggagtt cgacacgttc gctgcgtgga
      841 cgaccgctgc gctgcagtcg ctcggtgccc ggtatgccgt ccccgccgcc tgtcggggga
      901 gcggcacgcc cgctgcgctg tcgtggctgc tggacgcgct gcgggtcccg cggggcgagc
      961 cactgctcga catcggcgcg ggactgggcg ggcctgcggc atacgcccag cgtcagcacg
     1021 gcgtgcgccc cgtctgcgtg gaccccatgc cgcaggcgtg cctgggtgcg ttggatctgt
     1081 tcggcctgga cgtggttcag gccgaggcgg ggcggatgcc ctttgcggac aacagttttc
     1141 gccacgcgtg gtcgctcggc accctctgca cgacccctga ccgggtgggt tggctcgccg
     1201 agtggggtcg ggtgctgacc cggggggcga ggctcggagc gatggtcctc gtcagcacgg
     1261 acgcgccctt cgcgacctcg cggggaaacg tcttccccga cctgcccgag ctggatcggc
     1321 tctgggccgg cgcgggcttc tatcccgtgc gccagcgctg gacccgcagg ctgccgcagg
     1381 ccggcgccga gtggcgcgag gcggaggacc gggtcgccca gcgcatctgg gaggtgcatg
     1441 gcgaggatcc ccggtacgcc ctcgtccagg cgcagcagcg caccctcgga cagctgatca
     1501 ggagtggccg cgtcaggggt ctgctggtgg tcctggcgcg agcctgaggg cgcctggctc
     1561 cggccgcgcg acccgctcgc gcacctgcgc agaacgcgtg cggggctgtg caaggatgag
     1621 ccccgccgcc ggcgccctgc gcctggaggg cacccatcgg gtgagttaaa cagtcagccg
     1681 cccaacgcca tgacctggtc gcggagtggc tccgcgaccg tgtcacgtgt tgcaggaggc
     1741 tgttgtgcca cacgccgtgc cggagaccgg cgggacgttc acctacggac ctgcggacgg
     1801 ccagtggtgg tggtcccagt cggtgttcga gctgtacccg ctcaccgacc ggtgcgtccc
     1861 tggcctggca tcgctcgtcg acgtcgagca tggtg
//
LOCUS       DASYFY010000133         5176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1375974, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000133 DASYFY010000000
VERSION     DASYFY010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5176
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1375974"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /locus_tag="VGN19_02475"
     CDS             complement(<1..615)
                     /locus_tag="VGN19_02475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="copper oxidase"
                     /protein_id="HEV7194781.1"
                     /translation="MTRRRSRFPVPESRPALGGARGFWFLRDVPVVLWLVATVGVALM
                     HTALPAPRWLLIHLLLLGAASHSILVWSRHFTDAMLHSPARTGDRGRQSARLALLNGG
                     ALIVVVGVLIGRWPVTSVGAAAIAGATLWHGGSLLVQLRAALPARFAMTVRYYIAAAT
                     LLPVGALLGTLMARGTTDRTQERLMLAHVSLNVLGWLGLTVLGTL"
     gene            complement(612..1352)
                     /locus_tag="VGN19_02480"
     CDS             complement(612..1352)
                     /locus_tag="VGN19_02480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194782.1"
                     /translation="MENQRWSDSTSTPGLGPRRAPTRPAAHPPISGARAAVLAALERQ
                     TAPTTLAGLTEATSLHVNTLRGHLEALESQHRVHRMRAAPSGRGRPAWLYEATEPADR
                     GAPSEYAALASSLAAAIHRTSSDPRADGIEAGTEWGHALARTKQEEAAPGAVEARQRV
                     VALLTDLGFAPEPLSRATAVRLTRCPLLDAARSHPDVVCGVHLGIVRGALKEWGASLG
                     EVELLPFSEPGACRLLMPPTRSSARGRS"
     gene            1429..2217
                     /locus_tag="VGN19_02485"
     CDS             1429..2217
                     /locus_tag="VGN19_02485"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2249 domain-containing protein"
                     /protein_id="HEV7194783.1"
                     /translation="MNSPLAIASNEADAAAMAAVEQHHAVMAGALHLKVEAVLTAAAR
                     GVDEEVGAAAEQLVAWCSEVLMPHASAEEATVYAAAKRRSEGQLLVEGMLREHAVILD
                     LVREIGSATTPLATATAARALRVIFDNHLEKENTLVLPLLVSASDVSLTELLGGLHQL
                     VGGAMPREDGAGTQRHACGCGEADGEEYPVLDARAVPHAIRHATVFGALDAIRPGSGM
                     ILLAPHDPKPLLAQIERRSPGVFTVDYLVRGPENWQLAFVRQSA"
     gene            complement(2294..2917)
                     /locus_tag="VGN19_02490"
     CDS             complement(2294..2917)
                     /locus_tag="VGN19_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194784.1"
                     /translation="MTSWWVQALGWAGSAVLVYSLLQSRVLRFRLLNLAASVTLTVFN
                     ALLHVWPMVAMNTVLAGINIVFIVRLMRERDDERVYEVVAVGSDEAYLRHFLKVQGAD
                     IRKLFPAFEVGAATAGRSAYLVERGNETVGVVVVRDAGDGVAQVELDYVTPRFRDFSP
                     GEFVYRSSGLFRGKGIRRILTPPGMVNPYYAKLGFRPEGDHWVADLA"
     gene            complement(2966..3355)
                     /gene="trxA"
                     /locus_tag="VGN19_02495"
     CDS             complement(2966..3355)
                     /gene="trxA"
                     /locus_tag="VGN19_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEV7194785.1"
                     /translation="MTTTTLTAENFEKTVLESGTVLVDFWADWCGPCKRFAPVFEAAS
                     QEHPDIVFGKVDTEAEQALARAANITSIPMLMGFRDGILVFAQAGALPAPMLADIIGK
                     VQALDMDSVRADIEAEKNQPATGQSSA"
     gene            3482..4120
                     /locus_tag="VGN19_02500"
     CDS             3482..4120
                     /locus_tag="VGN19_02500"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEV7194786.1"
                     /translation="MSTEQLREYWDDLAAEYDSYPDHGLLDSDVRAAWRDLLRTWLPT
                     TPSTVVDLACGTGSMSVLMAELGHRVRAVDLSGEMVARAQAKAAPYGSAVEVSQADAS
                     DPPFSAGTMDVVFARHVLWTLPDPDGVLQRWAELLRPGGRMVLIEGRWGAEPAAADGL
                     PWRDGVPSKELVATVRALGFEPTVVQLRDEVFWGKQIEHERYLLAARRLDES"
     gene            4193..>5176
                     /locus_tag="VGN19_02505"
     CDS             4193..>5176
                     /locus_tag="VGN19_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012868303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HEV7194787.1"
                     /translation="MTAAPSVSNSITVRLTLPARATAVSELTGVIERGGGLVTGLDVT
                     ASGPDRLRVDVTAAARDTAHADELVESMRGVHGVEIGKVSDRTFLAHLGGKLKIESKV
                     PIRNRDDLSLIYTPGVARVCLAIAANPDDARRLTIKRNTVAVVTDGSAVLGLGNIGPL
                     AALPVMEGKAALFKRFADIDAFPICLNTQDTEEIIATVKAISPVFAGINLEDISAPRC
                     FEIEARLRDELDIPVFHDDQHGTAIVTLAALRNALRVVGKELSDCRVVMSGAGAAGTA
                     ILKLLLKAGATDVVVADERGVLHPDRPDIASGDQPALAWSAAHTNHRGVTGT"
BASE COUNT          823 a         1776 c         1777 g          800 t
ORIGIN      
        1 cagggtgccc aacacggtca ggccaagcca gcccaggacg ttgagactca catgggccag
       61 catcagcctt tcctgggtcc ggtcagtggt gcctcgggcc atcagggtgc ccagtagcgc
      121 gccgacgggt agcaaggtcg ccgcggcgat gtagtagcgc acggtcatgg cgaaccgcgc
      181 gggaagggcg gcgcgcagct ggaccagcag ggatcctccg tgccagagcg tcgcgccggc
      241 gatggcggcg gcgcccacgg acgtcaccgg ccaccgaccg atgagaacgc ccacgaccac
      301 gatcagggcg ccgccgttga gcaaggcgag ccgcgcggac tgccggcctc ggtcacccgt
      361 gcgggcgggg ctgtgcagca tggcatcggt gaagtgcctg ctccagacca ggatcgagtg
      421 gctcgcggcg cccaggagga gtaggtggat cagcagccag cgcggagccg gcagggcggt
      481 gtgcatcaag gccaccccga ccgtcgcgac aagccagaga acgacgggga cgtcccgcag
      541 gaaccagaac ccgcgggccc cacccagggc gggtcggctt tccggtaccg ggaacctgga
      601 cctccggcga gtcatgaccg gcctctcgcc gagctgcgag tcggtggcat cagcagtcgg
      661 cacgcgcctg gctcggagaa cggcagcagc tcgacctcgc ccaaggaagc cccccactcc
      721 ttgagggcgc cccggacgat gcccaggtgc acgccacaca ccacgtccgg gtggctgcgt
      781 gcggcgtcca gcagggggca ccgggtcagt cgcaccgcag tcgcccggga gagcggctca
      841 ggggcgaagc cgaggtcggt cagcagggcc acgactcgct gtctggcctc gaccgctccg
      901 ggggcggcct cctcctgctt ggttcgggcg agggcgtgtc cccattccgt gccggcttcg
      961 atgccgtcgg ctcgtgggtc agaactggtg cggtggatcg ccgcggcaag gctcgacgcc
     1021 agcgcggcat actccgaagg cgccccgcgg tccgcaggct cggtcgcctc gtacagccag
     1081 gccgggcgtc cgcgaccgct gggcgcggcc cgcatccggt gcacccggtg ttgagactca
     1141 agtgcctcga ggtgcccgcg cagggtgttg acatgcagcg aggtggcctc cgtcaatccg
     1201 gccagcgtgg tgggtgcggt ctgtcgctcc agcgcggcga gcacagccgc ccgcgcgccc
     1261 gaaatgggcg gatgggccgc gggccttgtt ggcgcccgcc gggggcccag ccccggcgtg
     1321 gaggtgctgt cggaccagcg ctgattttcc acggagctag tgtagtaaaa tacctctcgt
     1381 cgtcaaaact attgacgatg cctggtccga ctccggaggt tgccgatcat gaattctccc
     1441 ctcgccatcg cgtccaacga agcggacgct gccgctatgg cagccgtcga gcagcatcac
     1501 gccgtgatgg ccggcgcgtt gcacctgaag gtcgaagccg tcctcaccgc ggccgctcga
     1561 ggtgttgacg aggaggtggg agcagcggct gagcagctcg tggcatggtg ctcggaggtg
     1621 ctgatgccgc acgcgagcgc agaggaagcc accgtgtatg ccgcggccaa gcggcgctcg
     1681 gaaggccaac tcctggtgga gggcatgctc cgggagcacg ccgtgatcct cgacctcgtg
     1741 cgcgagatcg gtagtgcgac cacaccgctg gccactgcca cggccgcccg agcgctgcgg
     1801 gtgatctttg acaaccacct ggagaaggag aacaccctcg tcctgccgct gctggtgagt
     1861 gcctctgacg tctcgctgac cgagctgctc ggcggcctgc atcagctggt tggaggtgcg
     1921 atgccacgcg aggatggcgc aggaacgcaa cggcatgcct gcggctgcgg ggaggccgac
     1981 ggtgaggagt atccggtgct cgacgcccgg gccgtcccgc atgcgatccg gcacgccacg
     2041 gtcttcggcg ccttggacgc gatccggcct gggagcggaa tgatcctcct tgcaccgcat
     2101 gaccccaagc cgctgctcgc gcagatcgag cgccgcagcc ctggcgtctt cacggtggat
     2161 tacctcgtgc gcgggccaga aaactggcag ctcgccttcg tccgccagtc cgcctgattg
     2221 cttcgccggc gggcctgctg acccgcccga acgctgtggt tggtgatgct gtggggcagc
     2281 gccatggagc cgactacgcc agatcggcga cccagtggtc gccttccgga cggaacccga
     2341 gcttggcgta gtacgggttg accatccccg ggggagtgag gatgcgacga atccccttgc
     2401 cccgaaagag tccactgctg cggtacacga actcaccggg ggagaagtcg cgaaagcgtg
     2461 gggtcacgta gtcgagctcc acctgagcca ctccgtcccc ggcgtcgcgg accaccacca
     2521 cacccacggt ctcgttaccg cgctcaacca ggtacgcgct gcggccagcg gtggccgcgc
     2581 cgacctcgaa tgccggaaag agcttgcgga tgtcggcgcc ctgcaccttc aggaagtgcc
     2641 gcagatacgc ctcgtccgaa cccaccgcga cgacctcgta cacccgttcg tcgtcgcgct
     2701 cgcgcatcag ccgcacgatg aagacgatgt tgatgccggc cagcaccgtg ttcatcgcca
     2761 ccatcggcca gacgtgcagc agcgcgttga agacggtcag cgtgacgctc gcggcgaggt
     2821 tcagcagtcg gaaccggagg actcgggact ggagcaacga gtacacgagg acggccgagc
     2881 ccgcccagcc cagggcctga acccaccacg acgtcatggt ggccacgatg tcacaggcgc
     2941 accgtgatca ccggcgcacc gtggcctagg ccgacgactg accggtcgcc ggctggttct
     3001 tctcagcttc gatgtcagcc cggacgctgt ccatgtcgag ggcctggacc ttaccgatga
     3061 tgtcggccag catcggcgca gggagcgcgc ccgcctgggc gaagacgagg atgccgtcgc
     3121 ggaaacccat cagcatggga atcgaggtga tgttggccgc tctggccaga gcttgctcgg
     3181 cctcggtgtc gaccttgccg aacacgatgt cggggtgttc ctgcgaggca gcctcgaaga
     3241 cgggggcgaa acgcttgcag gggccacacc agtcggccca gaagtcgacc aacaccgtgc
     3301 cgctctcgag cacggtcttc tcgaagttct ccgcagtcag cgtggtcgta gtcatgtgag
     3361 cctcaacgtc tcgcctgccc gcatgcttcc catggttccc cttgttcccc ctggttcctc
     3421 ctgcagctgg cccgtagcgc cgtccttcag ggtgtcggcc ggtcagccta gagttgcgta
     3481 gatgagcacc gagcagcttc gcgagtactg ggacgacctt gctgccgagt acgacagcta
     3541 ccccgaccat ggtctgctgg actccgacgt gcgcgcggcc tggagggacc tgctgcgcac
     3601 ctggcttccc accacaccgt cgaccgtggt cgacctggcg tgcggcaccg gctccatgag
     3661 cgtgctcatg gccgagctgg gccaccgcgt ccgtgcggtc gacctctccg gagagatggt
     3721 ggctcgtgcc caggcaaagg ctgctccgta cggctcggcg gtggaggtct cccaggccga
     3781 cgccagcgac cctccgttct cggcggggac gatggatgtc gtctttgcgc ggcacgtgct
     3841 gtggaccctt cccgaccccg atggcgtgct gcagcgctgg gccgaactgc tgcgtcccgg
     3901 cggtcggatg gtgctcatcg agggacgctg gggcgcggag cccgcggcgg cggacggcct
     3961 tccctggcgg gatggggtgc cgtcgaagga gctcgtggcg acggtccgcg cactgggctt
     4021 cgagcccacc gtggtgcagc tgcgagacga ggtgttctgg ggcaagcaga tcgaacacga
     4081 gcgatatctg ctggctgcgc gcaggctgga tgagtcgtga cccgagcacg ccccgtctcg
     4141 ccgcgcggga tgccatttcg gtctaccccg cagtagtggc aagaatgcga ccatgaccgc
     4201 cgccccctcc gtgtcgaact ccatcaccgt tcgtctgact cttccggctc gcgccaccgc
     4261 ggtgtctgag ctcaccggcg tcatcgagcg cggcgggggc ctggtcaccg gcctcgatgt
     4321 caccgcctcg ggtcccgacc gactgcgggt cgacgtgacg gccgccgcca gggacactgc
     4381 ccatgccgac gagctggtcg agtccatgcg gggggtgcat ggggtcgaga tcggcaaggt
     4441 ttcggaccgc acgttcctcg cacacctcgg cggcaagctc aagatcgagt ccaaggtccc
     4501 gatccgcaac cgcgacgacc tctccctgat ctataccccc ggagtcgctc gggtgtgtct
     4561 ggccatcgcc gccaaccccg acgacgcccg acggctgacg atcaagcgca acaccgtcgc
     4621 cgtggtcacc gacggctcgg cggtcctcgg cctgggaaac atcggaccgc tggcggccct
     4681 acccgtcatg gagggcaagg cggcgctgtt caagaggttc gccgatatcg acgcctttcc
     4741 catctgcctg aacacccagg acaccgagga gatcatcgcc acggtcaagg cgatcagccc
     4801 ggtgttcgcg ggcatcaacc tcgaggacat ctcggcaccc cgctgcttcg agatcgaggc
     4861 ccgcctgcgg gacgagctgg acatcccggt tttccacgat gaccagcacg gtacggcgat
     4921 cgtgacgctg gcggccttgc gcaacgcctt gcgggtggtc ggcaaggagc tgagcgactg
     4981 ccgcgtcgtc atgtccggcg ccggggcagc cggcaccgcc atcctcaagc tgcttctcaa
     5041 ggccggagcc accgatgtcg tcgtcgccga cgagcggggc gtcctgcacc ctgatcgacc
     5101 cgatatcgcg tccggggacc agcccgcgct ggcctggtcg gcggcccaca ccaaccaccg
     5161 tggcgtgacc gggacg
//
LOCUS       DASYFY010000134         1607 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1743349, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000134 DASYFY010000000
VERSION     DASYFY010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1743349"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VGN19_02510"
     CDS             complement(<1..247)
                     /locus_tag="VGN19_02510"
                     /EC_number="5.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009357099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase family protein"
                     /protein_id="HEV7194788.1"
                     /translation="MTSQPATVPPLPPKGRLVLLRHGETTWSLSGQHTGRTDIPLTPH
                     GEQLAAEAGRLLTGYHFALVLASPLQRARRTAELAGLH"
     gene            273..1118
                     /locus_tag="VGN19_02515"
     CDS             273..1118
                     /locus_tag="VGN19_02515"
                     /inference="COORDINATES: protein motif:HMM:TIGR00654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEV7194789.1"
                     /translation="MRLRYRLLNVFARQGDPFSGNPLCVFEDGSALDEDQMQGLARQL
                     NLSETTFLHPAAHGADAVVRIFTPNYEMAFAGHPTLGTAHVVRALGLAGDSLALSMPA
                     GVVPVVAAGDEWTLTSMPGRVLEDYEPGRIAQAVGIGAADLVTPVQQVSTGSPQVIAQ
                     VGTRDALNRAIGNAALMREFAGMGTRGGETLVYLWHEGQHGTIEARALFTQDAAAIED
                     PATGSACANLGAWLAAQGRAGHWTVSQGTQAHRPSTLRLSVADDGQVQVGGLVRAVGA
                     GEIQL"
     gene            1150..>1607
                     /locus_tag="VGN19_02520"
     CDS             1150..>1607
                     /locus_tag="VGN19_02520"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEV7194790.1"
                     /translation="MPTYVVLLRAVNVGGRKLNMAAARKVLEDNGFGAVESHIQTGNF
                     LVRTPLRSDAKVEAKVSELLAAHAGYDIVAIARRPRELTDLVKAVDGIPSSLPGTPAR
                     YVTFCVAAPSPSAARELEAWDASDERAHVIGKDVMVEIGVPFNEAKLGGA"
BASE COUNT          247 a          547 c          579 g          234 t
ORIGIN      
        1 cgtgcagtcc cgccagttcg gccgtgcgac gcgcgcgctg gaggggcgac gccaggacga
       61 gggcgaagtg atagcccgtg agcagccggc ccgcctcggc cgccagctgc tcgccgtgcg
      121 gggtcaacgg gatgtcggtt cgacccgtgt gctgcccgga cagggaccag gtcgtctcac
      181 catggcgtag gaggaccagt cgacccttcg gcgggagggg aggaaccgtg gcaggctgag
      241 acgtcacccg gccagcatga cagagtggct ccatgcgcct gcgctaccgc ctgctcaacg
      301 tctttgcccg tcaaggcgat ccgttctcgg gcaatcccct gtgcgtcttc gaggacggca
      361 gcgcgctgga tgaggaccag atgcagggac tggcccgtca gctcaacctc tcggagacca
      421 cctttctcca tccggctgcc cacggcgcag acgcagtcgt ccgcatcttc acccccaact
      481 atgagatggc cttcgccggg catcccactc tcggcacggc gcacgtcgtg cgcgctcttg
      541 gcctcgccgg cgacagcctt gccctctcga tgccggccgg cgtcgtgccg gtcgtggcag
      601 ccggcgatga gtggaccctc acgtcgatgc ccggccgcgt gctggaggac tatgagcccg
      661 ggcgcatcgc ccaggcggta gggatcgggg cggcggacct ggtgacacct gtgcaacagg
      721 tcagcaccgg cagtccgcag gtcatcgccc aggtcggcac tcgcgacgcg ctgaaccggg
      781 cgatcggcaa cgcggcgctc atgcgcgagt tcgccgggat ggggacccgc ggaggcgaga
      841 cactggtcta cctgtggcac gaggggcagc acggcaccat cgaggcccgg gcgctgttca
      901 cccaggacgc cgccgccatc gaggacccag cgacggggtc ggcatgcgcg aacctcggcg
      961 cgtggttggc cgcccaaggg cgtgccggcc actggaccgt cagccagggc acgcaggccc
     1021 accgcccgtc gacgttgcgc ctctcggtcg ccgacgacgg acaggtccag gtcggcggtc
     1081 tcgtgcgggc cgtcggtgcg ggggagatcc agctatgagc ggtcgtcgcc gctccgaagg
     1141 gggatagccg tgcccacgta tgtcgtgctg ctgcgcgcgg tcaacgtcgg tggtcgcaag
     1201 ctcaacatgg ccgccgcgcg gaaagtgctg gaggacaacg ggttcggggc cgttgagtcg
     1261 cacatccaga cgggcaactt cctggtgagg acaccgctgc gcagcgacgc caaggtcgag
     1321 gccaaagtct ccgagctgct ggcggcccac gcggggtacg acatcgttgc catcgccagg
     1381 cgccctcgcg agctcaccga cctcgtgaag gccgtcgacg gcataccgtc gagccttcct
     1441 gggaccccgg cgcggtacgt gaccttctgc gtggcggctc ccagcccgtc ggccgcgaga
     1501 gagctcgagg cgtgggacgc cagtgacgag cgcgcgcacg tgatcggcaa ggatgtcatg
     1561 gtggagatcg gggtgccgtt caacgaggcc aagctcggcg gtgccag
//
LOCUS       DASYFY010000135         4532 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1324068, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000135 DASYFY010000000
VERSION     DASYFY010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4532
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1324068"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..376
                     /locus_tag="VGN19_02525"
     CDS             <1..376
                     /locus_tag="VGN19_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HEV7194791.1"
                     /translation="VGEIADEYDREAPGVEELGDGQSGKYRVPATLDIDDLAELFGVE
                     IDEEEVDSVGGLLAKHLGRVPILGSHCEVAGLSLTAERMAGRRHRVASVIVERVEVPQ
                     EEGVTEESPQRATVEHQREGVS"
     gene            373..1293
                     /gene="era"
                     /locus_tag="VGN19_02530"
     CDS             373..1293
                     /gene="era"
                     /locus_tag="VGN19_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEV7194792.1"
                     /translation="MTENGYAAGFACLVGRPNAGKSTLTNALVGHKVAITSSKPQTTR
                     HTIRGIVTTEASQLVLVDTPGLHKPRTLLGERLNHVVRETLLEVDVIGFCLPADQRIG
                     PGDAFIARELTEIQQSKRRPVVAIATKSDRVERQRMAEHLIAIDQLGTWDAIVPCSAV
                     DGTQVKEVGQVLASYLPGSPGPLYPEGVLTDEPDVVMIAELVREAALEGVRDELPHSL
                     AVVVEEMLQREGRPEGKPLLDVRVNVFVERSSQKAIIIGRGGSRLREVGTTARQGIEE
                     LLGQRVHLDLHVKIAKDWQRDPKQLQRLGF"
     gene            1670..2704
                     /locus_tag="VGN19_02535"
     CDS             1670..2704
                     /locus_tag="VGN19_02535"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEV7194793.1"
                     /translation="MRVGVFGATGQVGSVMRTLLAERGFPVDEMRYFASARSAGTTLP
                     WAGGEVTVEDTATADFSGLDVALFSNGGSTSKEWAPRVAAAGATVVDNSSAWRRDPEV
                     PLVVSEVNADDLDDIPKGIVANPNCTTMAAMPVLAPLHAAAGLVRLTVASYQAVSGSG
                     GKGVQELDGQLRGAYAAGDVRGLALDGRSVAVPAPNVYAVPVGFNVIPLAGSIVEDGW
                     LETDEEQKLRNESRKILHIPDLLVSGTCVRVPVFTGHSLAIHAEFSDSLTPEAALELL
                     GRAPGVVVTDVPNPLQAAGRDEVFVGRVRADQSAPQGRGLVLFVVGDNLRKGAALNAV
                     QIAEELLKRR"
     gene            complement(2921..>4532)
                     /locus_tag="VGN19_02540"
     CDS             complement(2921..>4532)
                     /locus_tag="VGN19_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009358836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7194794.1"
                     /translation="GGLGLTMSAYGKALVLVGSAHPSLGALLSAHQSIGVPEPVKLVG
                     TPEQKQEFLPRCAAGAISAFLLTEPDVGSDPARMASTATPTADGAAYLLDGVKLWTTN
                     GVVAELLVVMARVPKGDGHRGGITAFVVEGTSEGITVERRNAFMGLKGLENGLTRFHQ
                     VRVPAQNRLGREGDGLKIALTTLNAGRLSIPAMCTAAGRWSLKIAREWSATRVQWGRP
                     VGEHGAVAQKLAFIAATTYGLESVLELSAQLADAGTKDIRIEAALAKLWASEMAWKIA
                     DELVQIRGGRGYETAASLAARGERAVPAEQLLRDLRINRIFEGSTEIMHLLIAREAVD
                     AHLKAAGDLASPDAGLRDKARAAVGASGFYARWLPQLVAGKGTTPSSYAEFGPLAEHV
                     RYVERASRKLARQTFYAMSRWQAKLEYRQAFLGRVVDIGAELFAMSAACSRAAMVLSD
                     DPRRGRSAQQLADAFCHQSRVRVDTLFAGLWTNTDDEDGRVAQGVLAGDYTWLEEGVL
                     DPSEGTGPWIAPWSPGPSESESVWRAVR"
BASE COUNT          677 a         1585 c         1573 g          697 t
ORIGIN      
        1 cgtgggcgag atcgccgacg agtacgaccg ggaggcgcca ggggtggagg agctcggcga
       61 cgggcagagt ggcaagtacc gcgttcccgc aacgttggac atcgacgacc tggccgagct
      121 cttcggggtg gagatcgacg aggaggaggt cgacagtgtc gggggcctcc ttgccaagca
      181 cctcggccgg gtcccgatcc tcgggtcgca ctgcgaggtg gctggcctgt cgctcacggc
      241 cgaacgcatg gctggtcgcc gtcaccgggt ggccagcgtc atcgtcgagc gcgtggaggt
      301 ccctcaggaa gagggcgtca cggaggagtc accgcagcgg gctacggtgg agcaccagcg
      361 agaaggagtg tcatgaccga gaacgggtat gccgccggct tcgcgtgcct cgtcgggcgc
      421 cccaacgccg gcaagtccac gctgaccaac gccttggtcg gccacaaggt cgcgatcacc
      481 tcctccaagc cgcagaccac gcggcacacc atccgcggga tcgtgaccac cgaggcctcc
      541 cagctcgtgc tggtggacac ccctggactg cacaagccca ggacgctgct gggggagcgg
      601 ctcaaccacg tcgtccgcga gaccttgctc gaggtggacg tcatcgggtt ctgcctcccc
      661 gctgaccagc ggatcggtcc cggcgacgcg ttcatcgccc gggagctgac cgagatccag
      721 cagtcgaagc gccgcccggt cgtggccatc gccaccaaga gcgaccgggt cgagcgccaa
      781 cggatggcgg agcacctcat cgccatcgac cagctcggca cgtgggacgc gatcgtgccg
      841 tgctcggcgg tcgacggtac ccaggtcaag gaggtcggcc aggtgctggc ctcgtacctg
      901 ccggggtccc caggcccgct gtaccccgag ggcgtgctca ccgacgagcc tgacgtcgtc
      961 atgatcgctg agctcgtgcg ggaggcagcc ctggagggcg tgcgcgacga gctgccccac
     1021 tcgctcgcgg tcgtcgtcga ggagatgctc cagcgtgagg gccgccccga gggcaagccc
     1081 ctgctcgacg tgcgcgtcaa cgtcttcgtc gagcggtcct cgcagaaggc catcatcatc
     1141 gggcgcggcg gctcgcgcct gcgcgaggtc ggcaccactg ctcggcaggg catcgaggag
     1201 ctgctgggcc agcgcgtcca cctcgacctg cacgtcaaga tcgcgaagga ctggcagcgc
     1261 gaccccaagc agctgcagag gctgggcttc tagccggatc gcgagccacg cctcggctgg
     1321 cttgatgcgg tcggcacccg ttcattgact actggccgat ggaccggatc ccttgtgcgg
     1381 ccgcgaaggc gaccaggatc actacggcgc cgacagctat cgtgagccaa aggaggaggc
     1441 gacgaagtgg catccttggc attgtcgatt cccctcgata gggcccgtta ccgtgtggta
     1501 tccccctaga gcatgaattt gttgctgcac tctcctcttg gtcggcggtc tcgtcaaccg
     1561 ccgcgcggcg gcttggtggc tgcggcgagg actgccaacc gccgcggcgt ttccgccaca
     1621 tcgcgagcca tgacgcgggt ggctgaggcg gcccacgtat cgttgaccca tgcgagttgg
     1681 agtcttcgga gccaccggtc aggtgggctc ggtcatgcgg acgctgttgg cagagcgggg
     1741 tttccccgtc gatgagatgc ggtacttcgc ctccgcgcgt tcggccggca cgaccctgcc
     1801 ctgggctggc ggcgaggtca ccgttgagga caccgcgacg gcggacttct ccggtctcga
     1861 tgtcgcactg ttctcgaacg gcggctcgac ctcgaaggag tgggcaccac gggtggccgc
     1921 cgcgggcgcc accgtcgtgg acaactcctc ggcctggcgc cgagaccccg aggtccccct
     1981 cgtcgtcagc gaggtcaacg ccgacgacct cgacgacatc ccgaagggca tcgtcgccaa
     2041 ccccaactgc acgacgatgg cggccatgcc ggtcctggcg ccgctccatg ccgccgctgg
     2101 actcgtccgg cttaccgtgg cctcgtacca agccgtgtcg ggatcgggtg gcaagggcgt
     2161 ccaggagctc gacggccagc tgcgtggcgc gtatgccgcg ggcgacgtgc gcggccttgc
     2221 tctcgacggt cgctcggtgg ccgtgcctgc cccgaacgtc tatgccgtgc cggtcgggtt
     2281 caacgtgatt ccgctcgccg gctcgatcgt cgaggacggc tggctggaga ccgacgagga
     2341 gcagaagctc cgcaacgagt cccgcaagat cctgcacatt cccgacctgc tggtctccgg
     2401 gacctgtgtt cgggtgccgg tgttcaccgg gcactccctg gcgatccacg ccgagttctc
     2461 cgactcgctg actcccgagg cggcgctcga gctgctcggc cgtgcgcccg gcgtcgtggt
     2521 caccgacgtt ccgaacccgt tgcaggcggc cgggcgcgac gaggtcttcg tcggccgcgt
     2581 ccgggccgac cagtctgccc cgcagggcag gggactggtg ctgttcgtcg tcggcgacaa
     2641 cctacgcaag ggtgccgcgc tgaacgccgt gcagattgcc gaggagctgc tcaagcgccg
     2701 ttaggccccg ggcccctcca tttgtccgtc ctcgggcggt tcgccgccct ctagaccgca
     2761 cctgactagt tcaagtgagc gcacagggcc ccctgtggac aactgtgcag caccccgact
     2821 ggttgtggaa aactctgcgg gatccgcgat tccgaggggt gtctgaccgc gcaagtcagg
     2881 gggactagtc acccaaaggg gtccaaacgg cgcgacgtgg tcagcggact gcccgccaga
     2941 ccgactcgct ctcactcggt cctggtgacc agggcgcgat ccagggcccg gtgccttccg
     3001 aggggtcgag cactccctct tcgagccacg tgtagtcgcc cgcgagtacg ccctgagcca
     3061 cgcgcccgtc ctcgtcgtcg gtgttggtcc acagccccgc gaagagggtg tcgacccgca
     3121 cccggctctg gtgacagaag gcgtcggcca gctgctgcgc cgaccggccg cgtcgagggt
     3181 cgtccgagag caccatggcc gcccgcgagc acgccgcgga catcgcaaac agctccgcac
     3241 cgatatcgac cactcggccg aggaaggcct gccggtactc gagcttcgcc tgccaccgtg
     3301 acatcgcgta gaaggtctgc cgcgcgagct tgcgggaggc acgctccacg taccgcacgt
     3361 gctccgcgag cgggccgaac tcggcatacg aggaaggggt agtgcccttg ccggccacca
     3421 gctgggggag ccaccgcgcg tagaagccgc tcgcccccac ggccgcgcgg gccttgtcgc
     3481 gcagaccggc gtcgggcgac gccaggtcgc ccgcagcctt caggtgggcg tcgaccgcct
     3541 cgcgcgcgat gagcagatgc atgatctccg tagagccctc gaagatgcgg ttgatccgca
     3601 ggtcgcgcag cagctgctcg gccggaactg cgcgctcacc gcgggcggcc agggacgccg
     3661 ccgtctcgta gccacggcca ccgcggatct gcaccagctc gtcggcgatc ttccaggcca
     3721 tctcgctcgc ccacagcttg gcgagcgcgg cctcgatgcg gatgtccttg gtaccggcat
     3781 cggcgagctg ggcggacagc tcgagcaccg actccagccc gtaggtcgtg gcggcgatga
     3841 aggcgagctt ctgcgccacc gccccatgct cgccgacggg ccgtccccac tggacgcggg
     3901 tcgccgacca ctcgcgggcg atcttgagcg accacctgcc cgcagccgtg cacatcgccg
     3961 gaatcgacag gcgccccgcg ttgagggtgg tgagggcgat cttgaggccg tctccctcac
     4021 ggcccagccg gttctgcgcc ggtacccgca cctggtggaa ccgggtcagg ccgttctcga
     4081 gtcctttgag ccccatgaac gcgttgcgcc gctcgacggt gatgccctcg gaggtgccct
     4141 cgacgacgaa ggccgtgatg ccgccgcggt gcccgtcgcc tttgggcacc cgggccatca
     4201 ccacgagcag ctcggcgacg acaccgttcg tggtccacag cttcaccccg tcgagcaggt
     4261 atgccgcgcc gtccgcggtg ggggtggcgg tgctcgccat ccgggccggg tcggatccca
     4321 cgtcgggctc ggtgagcagg aacgcggaga tcgcgccggc cgcgcaccgg gggaggaact
     4381 cctgcttctg ctccggggtc ccgaccagct tgaccggttc ggggacgccg atcgactggt
     4441 gcgccgagag cagcgcgccg aggctcgggt gagccgagcc gacgagcacc agcgccttgc
     4501 cgtaggcgga catcgtcagg cccagtccgc cg
//
LOCUS       DASYFY010000136         5246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_482539, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000136 DASYFY010000000
VERSION     DASYFY010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5246
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482539"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..1217)
                     /locus_tag="VGN19_02545"
     CDS             complement(30..1217)
                     /locus_tag="VGN19_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7194795.1"
                     /translation="MFELSKEHEDFRKVVREFAQAEVEPHIAKWDKDHYFPNELVPKM
                     GELGLFGLVVPEEFGGSRNPSADGPFTALCVAIEELGRVDQSIGITLSAGVGLGINPI
                     LTYGSQEQKERFLPDLVAGRALAGFGLTEPDAGSDAGATRTKAVRDGDEWVVNGAKAF
                     ITNSGTDITSVVTVTARTGTNDDGSAQLSAIMIPSGTPGFTVEPAYDKLGWHASDTHG
                     LTFENCRVPAANLLGNEGDGFKQFLKTLDDGRIAISALAVGCAQACLELATDYAKGRE
                     AFGRPIGANQGVAFPIADMAVAVEAARTLTYKAAWLKDELNAGRRTVKEVKQAAAVAK
                     LYSTEAAVTATRIATQVFGGNGFMEEYPVARFYRDAKILEIGEGTSEVQRMVIARGLG
                     LPA"
     gene            1324..1722
                     /locus_tag="VGN19_02550"
     CDS             1324..1722
                     /locus_tag="VGN19_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEV7194796.1"
                     /translation="MPALDRQTWTIRDIADEFEVTHRTVRHYEDLGLITPERRGTTRV
                     YHRRDRTRLALILRGKRLGFPLEEIRTIIDLYDRPRGKASQLEYVLGQIDERRRDLEE
                     RRRDLEDALTELGQFERRCREDLAHVARLG"
     gene            1727..2740
                     /locus_tag="VGN19_02555"
     CDS             1727..2740
                     /locus_tag="VGN19_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7194797.1"
                     /translation="MTALSVLFIGGTGVISSACSREAVARGMAVTILTRGTSVTHPQP
                     AGVESLHADVRDSEAVRSALGERQFDVVADFLSFTPDQVRQQLDHFAGPTRQSGRIGQ
                     YVFISSASAYQTPPSRLPVTESTPLRNPFWAYSRNKIACEDLLVRAYRDDDLPMTIVR
                     PSHTYDHTLPPFHGGWTMVERMRRGQEVVVHGDGTSLWTITHHEDFARAFVGLLGRSE
                     ALGEAFHITSDEAPTWNRIYTDVAEAAGVEPRLVHVTSEAIAAQDADFGASLLGDKSN
                     SMVFDNTKVRALVPGWSARIPFREGAQQIVDWHGADPARRRVDPRLDALYDRLVEAHR
                     TPR"
     gene            complement(2761..3618)
                     /gene="kynA"
                     /locus_tag="VGN19_02560"
     CDS             complement(2761..3618)
                     /gene="kynA"
                     /locus_tag="VGN19_02560"
                     /EC_number="1.13.11.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005269333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase"
                     /protein_id="HEV7194798.1"
                     /translation="MSNHEDSRAVRQVEEGVQRDFTSAMSYGDYLDLGRLLSAQHPRS
                     EPAQHDELLFIIQHQTSELWLKLLLHELRSARSLLASDDLPPALKRMARVKHIQRTLT
                     DQWSVLATLTPSEYAEIRPFLATSSGFQSYQYRAVEFLLGNKNADMVKVFDHDESARA
                     MLAELLEQPSLYDEFLRYLDRRGYAVPAQLLERDFTQPYRPDEALVDTFAEVYAHPHE
                     HWGVYETCEELVDIEDNFQLWRFRHLQVVTRTIGHKKGTGGSSGVDFLRRALDLTFFP
                     ELYAVRTRV"
     gene            3724..>5246
                     /locus_tag="VGN19_02565"
     CDS             3724..>5246
                     /locus_tag="VGN19_02565"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEV7194799.1"
                     /translation="MHWRPKSWTATTGAAALGAAACLLPTMSPVQGASVDSPTTPRMS
                     TAATSTVAASTAAASTVAASTPPAQVQTLDSTLSIPWDVAPTPDGGLLFTERAGNTWF
                     RTAAGTTRMLTTDQADLFVANEAGLMGITTDPGFAANRTYYTCQAYRGSGTAPIDIRV
                     IRWQLAADALSATRQGTVITGLPITSGTHAGCRLRFAADGTLHLGTGDAVTGTNPQNL
                     DSLGGKTLRVWANTGQPPADNPFAASSANRRFVWTYGHRNVEGMALRPGTNQMWSVEH
                     GPDRNDEVNLLVPGGNYGWDPIPGYNQNVPMTDLTKFPNAVVARWSSGFPTVAPSGGT
                     FLTGSRWGRWEGALAIALLKNQGVRILSLTPDGRLRGDELFPQLDTVYGRIRTVQASP
                     SGNSIYVTTSNGSGDRLMQVTATDTPQAYSPHLDVSPSGTAVVNRGGVLTAFVRGVDS
                     RIYFASQTTAGGPWSGFQVMPGGPVASAPAAVSWGGSRVDVFARGTSGQLLHAWSTGA
                     "
BASE COUNT          818 a         1851 c         1751 g          826 t
ORIGIN      
        1 cgggtcggac tcgtagaccg gcggtggggt catgcgggca ggcccagccc gcgggcgatg
       61 accatccgct gcacctcgga ggtgccctcg ccgatctcga ggatcttggc gtcgcggtag
      121 aaccgggcga ccgggtactc ctccatgaag ccgttgccgc cgaagacctg ggtggcgatg
      181 cgggtggcgg tcacggccgc ctcggtcgag tagagcttgg ccaccgcggc ggcctgcttg
      241 acctccttga ccgtgcgccg gccggcgttg agctcgtcct tgagccacgc cgccttgtag
      301 gtgagcgtcc gggccgcctc caccgcgacg gccatgtcgg cgatcgggaa ggcgacgccc
      361 tggttggctc cgatcgggcg gccgaaggcc tcgcggccct tcgcgtagtc ggtcgcgagc
      421 tccaggcagg cctgggcgca gccgacggcg agcgcgctga tggcgatccg gccgtcgtcg
      481 agagtcttca ggaactgctt gaatccatcg ccctcgttgc ccaacaggtt cgcggccggg
      541 acgcggcagt tctcgaaggt cagtccgtgc gtgtcggagg catgccagcc gagcttgtcg
      601 taggcgggtt cgaccgtgaa tcccggtgtg ccagaaggga tcatgatggc gctgagctgc
      661 gccgagccgt cgtcgttcgt cccggtgcgg gcggtgacgg tgaccaccga ggtgatgtcg
      721 gtgcccgagt tcgtgatgaa ggccttggcg ccgttgacga cccactcgtc accgtcgcga
      781 acagccttgg tgcgcgtggc gcctgcatcg gagccggcat cgggctcggt cagaccgaat
      841 ccggccagcg cgcggccggc gacgaggtcg ggcaggaagc gctccttctg ctcctggctg
      901 ccgtaggtca ggatcgggtt gatgccgagc ccgacccccg cggagagcgt gataccgatg
      961 gactggtcga cccggccgag ctcctcgatg gcgacgcaca gggcggtgaa cggaccgtcc
     1021 gcgctgggat ttcggcttcc cccgaactcc tcgggaacca ccaggccgaa cagtccgagc
     1081 tcccccatct tcggcacgag ctcgttgggg aagtagtggt ccttgtccca cttcgcgatg
     1141 tgcggctcga cctcggcctg cgcgaactca cggacgacct tccggaagtc ctcgtgctcc
     1201 ttgctcagct cgaacatcgt ggtcccactc tcgttctcga aggtgcggcg cggggatcgc
     1261 ccggccgccc ggcctaccgc cagtgcttga cgttgacgta aacgtaaagc aatactcacc
     1321 gatatgccag ccctggatcg tcagacgtgg accatccgcg acatcgcgga cgagttcgag
     1381 gtcacccatc gcacggtccg gcactacgag gacctcggcc tgatcacccc ggagcggcga
     1441 ggaaccaccc gtgtctacca ccgccgcgac cgcacccggc tggcgctgat cctgcggggc
     1501 aagcggctcg ggttcccgct ggaggagatc cgcacgatca tcgacctgta cgaccggcca
     1561 cgcggcaagg ccagccagct cgagtacgtg ctgggtcaga tcgacgagag gcgacgggac
     1621 ctcgaggaac gccgccggga cctcgaagat gccctgaccg agctgggcca gttcgagcgc
     1681 cgatgccgag aggaccttgc ccacgttgcc cgcctagggt gaggagatga ccgccctgtc
     1741 agtcctgttc atcggtggca ccggagtgat cagctctgcc tgttcgcgcg aggcagttgc
     1801 ccgcggaatg gcggtgacga tcctcacccg cggtaccagc gtgacccatc cccagcccgc
     1861 cggggtggag tcacttcatg ccgacgtgcg tgacagtgag gccgtgcgct cggcacttgg
     1921 cgagcggcag ttcgacgtcg tcgcggactt cctgtcgttc accccggacc aggtccgcca
     1981 gcagctcgac cactttgcag gccccactcg gcagtccggc cgcatcgggc agtacgtgtt
     2041 catcagctcg gcgtcggcgt accagacgcc tccgtcccgc ctgcccgtca cggagtccac
     2101 cccgttgcgg aacccattct gggcctactc ccggaacaag atcgcgtgcg aagacctgct
     2161 ggtgcgcgcc taccgcgacg acgacctgcc gatgacgatc gtgcgtccct cgcataccta
     2221 cgaccacacc ctgccgccct tccacggcgg ttggaccatg gtcgagcgga tgcggcgcgg
     2281 gcaagaggtc gtcgtccacg gcgacggcac gtcgctgtgg accatcacgc accacgagga
     2341 cttcgcccgc gctttcgtcg ggctgctggg gcgcagcgag gcgctcggag aggccttcca
     2401 catcacctcc gacgaagcgc ccacctggaa ccgcatctac accgacgtcg ccgaggccgc
     2461 cggcgtggag ccccgactgg tccacgtgac gtctgaggcc atcgccgcgc aggacgccga
     2521 cttcggggcg tcgctgttgg gcgacaagtc gaactccatg gtgttcgaca acaccaaggt
     2581 ccgcgcgctg gtccccggct ggagcgcccg gatcccgttc cgtgaggggg cccagcagat
     2641 cgtggactgg cacggcgccg atccggcccg gcgccgcgtc gaccctcgcc tggacgcgct
     2701 ctacgaccgg ctcgtcgagg ctcatcggac gccgcgctag tcagacctgc tcagacccag
     2761 tcagacccgg gtgcgcaccg cgtagagctc ggggaaaaac gtcaggtcga gagcgcgccg
     2821 gaggaagtcg acccccgagg aaccgcccgt gcccttcttg tggccgatcg tgcgagtgac
     2881 cacctgcagg tgtcggaagc gccacagctg gaagttgtcc tcgatgtcga cgagctcctc
     2941 acaggtctcg tacacccccc agtgctcatg agggtgggcg tagacctcgg cgaacgtgtc
     3001 gaccagggcc tcgtccggcc ggtatggctg ggtgaagtcc cgctcgagca gctgcgccgg
     3061 cacggcatac ccacggcggt ccagatagcg caggaactcg tcgtacaggc tcggctgttc
     3121 caggagctcg gcgagcatgg cgcgggccga ctcgtcatgg tcgaagacct tcaccatgtc
     3181 ggcgttcttg ttgcccagca ggaactccac ggcgcggtac tggtaggact ggaaaccgga
     3241 gctcgtggcg aggaagggcc ggatctcggc gtactcgctg ggggtcagcg tcgcgagcac
     3301 ggaccactgg tcggtcaggg tccgctggat gtgcttgacc ctggccatcc gcttgagggc
     3361 cggcggcaga tcgtcggacg cgagcaggct ccgcgccgac cggagctcgt ggagcaggag
     3421 cttgagccac agctctgacg tctggtgctg gatgatgaac aacagctcgt cgtgctgcgc
     3481 gggctcactg cgcgggtgtt gtgccgagag aagccggccg agatccagat agtcgccgta
     3541 ggacatcgcc gaggtgaagt cccgctgcac cccctcctcg acctgccgaa cggcccgcga
     3601 gtcctcgtgg ttgctcatgc gcgcaaccta tcgcccgcga gtgcgacgcc gacgcgggcc
     3661 gaccggtcgg acccggcgat tctgagcgtg cggcatccgg acctcaggcc tactgtccga
     3721 ggtatgcatt ggcgccccaa gtcctggacg gccaccaccg gggctgcggc gctcggtgca
     3781 gccgcctgcc tcctgcccac gatgagtccg gtacagggtg cctcggtcga ctcccccacc
     3841 acaccccgga tgtccaccgc cgcgacctcc acggttgcag cctccaccgc cgcagcctcc
     3901 acggttgcgg cctccacccc gcccgctcag gtgcagactc tcgactccac cttgtcgatc
     3961 ccctgggatg tcgctccgac tccggacggc gggctgctgt tcaccgagcg agcggggaac
     4021 acgtggttcc gcaccgcagc cgggaccacg cgaatgctga ccacggacca ggccgacctg
     4081 ttcgtggcca acgaggccgg cctgatgggc atcacgaccg accccggttt cgcggccaac
     4141 cggacctact acacgtgcca ggcctatcgc gggtccggta cggcacccat cgacatcaga
     4201 gtcatccggt ggcagctggc cgcagacgcc ctgtccgcga cccgccaggg caccgtgatc
     4261 accgggctgc cgatcacgtc aggaacccac gccgggtgcc ggctgaggtt cgctgccgac
     4321 ggcacgctgc acctcgggac cggggacgcg gtgaccggca ccaacccgca gaacctcgac
     4381 tccctgggcg gcaagaccct gcgggtctgg gcgaacaccg gtcagccacc tgcggacaac
     4441 ccgttcgccg ccagtagcgc gaaccgccgg ttcgtctgga cgtacggtca tcgcaacgtc
     4501 gaagggatgg cgctgcgccc cgggacgaac cagatgtgga gcgtcgaaca cggaccggac
     4561 cgcaacgacg aggtgaacct gctggtccct ggaggcaact acggctggga cccgatccct
     4621 ggctacaacc agaacgtccc gatgaccgac ctgacgaagt tccccaacgc cgtcgtcgcc
     4681 cgctggtcct ccggcttccc gacagtcgcc cccagcggcg gcaccttcct caccggtagc
     4741 cggtggggcc gctgggaggg cgcgttggcc atcgccctgc tcaagaacca gggcgtacgg
     4801 atcctctcgc tgacgcccga cgggcggctt cgtggcgacg agctctttcc tcagctcgac
     4861 accgtctacg gccggatccg cacggtccag gcatcgccct cgggcaactc catctatgtc
     4921 accacctcga acggctccgg cgaccgcctg atgcaggtca ccgccacaga caccccacag
     4981 gcgtacagcc cgcacctgga cgtctcgccc tcgggtacgg ccgtcgtcaa ccggggcggg
     5041 gttctgaccg ccttcgtccg tggcgtggac agccgcatct acttcgccag ccagaccacc
     5101 gcgggcggtc catggtcggg gttccaggtc atgccgggag gaccggtcgc ctcggcgccg
     5161 gccgcggtgt cctggggtgg ctcgcgggtg gatgtcttcg ctcgcggcac cagcggccag
     5221 ctgctgcacg catggtcgac gggcgc
//
LOCUS       DASYFY010000137         2628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1481433, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000137 DASYFY010000000
VERSION     DASYFY010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1481433"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1413)
                     /locus_tag="VGN19_02570"
     CDS             complement(<1..1413)
                     /locus_tag="VGN19_02570"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEV7194800.1"
                     /translation="MHPQVIAGRYEVLRAIGSGGMGTVWLARDTVLGREVAIKRVGAL
                     PGEPAAAARAMREARIAASLNDQHTVSVYDIVDEDDAHWLVMEYVDGQSLAEQIRDEG
                     PLPVTRVAAMGAAVAGALAKAHQRGIVHRDLKPGNILITQSGTPKVSDFGIARAHADD
                     QLTQTGFMTGTPTYLSPELARGGDPTSASDVWALGATLYYAVEGQPAYEAQANPLATL
                     QAIASGSPRPMELAGPLGGAIAAMMNPDVGERWNMATAARQLDRIARGDTTMALPAGA
                     AFGAGAATELISQGEGTQRMEAPVLAPPAYEQGSGGGRGDEPPDRERGSRAGWWVVGA
                     ILLLLLLLGLAYTLTNGFGSNTPTPRSTTTVTSTNTRTQPPSSTTQPTTSTSTTSSSS
                     TTTTPTTTTTTTANAGASQRFVRNYYRDVTKAGKRDQTWAELTPAMQAKAGGRAGYEG
                     FWTTISSVDVGEMTTDPATGA"
     gene            complement(1508..2470)
                     /gene="meaB"
                     /locus_tag="VGN19_02575"
     CDS             complement(1508..2470)
                     /gene="meaB"
                     /locus_tag="VGN19_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0015819 - lysine transport [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:1903826 - L-arginine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEV7194801.1"
                     /translation="MAPRTVDVPALVESARAGSPRAVARLISLVEDAHPALREVMATL
                     APHSGNAHIIGITGSPGVGKSTSTNAFVAAYRAQGKRVGVLAVDPSSPFSGGALLGDR
                     VRMQDHALDPEVYIRSMASRGHLGGLSWTTPQALRVLDAAGCEVILIETVGVGQSEVE
                     IASLADTTIVLLAPGMGDGIQAAKAGILEIGDVFVVNKADRDGADATVRDIRHMISLG
                     DRTEPNLWRPPVVKTVAAQGQGIDEVVEAIEKHTSWMESAGELRARRIRRAGDEIESI
                     ALQQLRAKMGDLRHGNGVDELAAAVVDGATDPYAAADQVVAALG"
     gene            complement(2480..>2628)
                     /locus_tag="VGN19_02580"
     CDS             complement(2480..>2628)
                     /locus_tag="VGN19_02580"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142914.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEV7194802.1"
                     /translation="GMSGARIALHLALELQRRGGGVGAAALCGGGGQGDALIVRVPRS
                     ADAS"
BASE COUNT          354 a          908 c          950 g          416 t
ORIGIN      
        1 ggcgccggtc gccgggtcgg tggtcatctc cccgacgtcg accgacgaga tcgtggtcca
       61 gaacccctca taccccgcac gcccacccgc cttggcctgc atggccgggg tgagctcggc
      121 ccaggtctgg tcacgcttgc cggccttggt gacatcccgg tagtagttcc tgacgaaccg
      181 ctgcgacgcg ccggcgttgg ccgtggtcgt cgtggtcgtg gtgggagtgg tcgtggtcga
      241 ggaggacgag gtggtcgacg tcgacgtcgt cggctgcgtg gtggacgaag gcggctgcgt
      301 gcgggtgttc gtggacgtca ccgtcgtcgt cgaccggggc gtgggggtat tgctgccgaa
      361 gccattcgtg agcgtgtagg cgaggcctag cagcagcagg agcagcagga tcgccccgac
      421 gacccaccac cccgcgcggg atccccgctc gcggtcgggc ggttcgtcgc cccggccacc
      481 ccccgaaccc tgctcgtatg ccggcggagc cagcacgggt gcttccatgc gctgggtgcc
      541 ttcgccttgc gagatgagct cggtcgccgc gccggcgccg aaggcggcgc ctgcgggcag
      601 cgccatcgtg gtgtcgccgc gggcgattct gtccagctgg cgagccgcgg tcgccatgtt
      661 ccagcgctcc ccgacgtccg ggttcatcat cgccgcgatg gcgccaccca gggggccggc
      721 cagctccatg ggtcggggag atcctgaggc gatggcctgc agggtggcca gcgggttggc
      781 ctgagcctcg taggcgggct ggccctccac ggcgtagtag agcgtcgcgc ccagggccca
      841 gacgtccgag gccgaggtcg ggtccccacc gcgagccagc tctggtgaga ggtacgtcgg
      901 ggtgcccgtc atgaagccgg tctgggtcag ctggtcatcg gcgtgcgcgc gagcgatccc
      961 gaagtcgctg accttgggag ttcccgactg cgtgatgagg atgttgcccg gcttgaggtc
     1021 gcggtggacg atcccgcgct ggtgcgcctt ggccagcgcc cctgccactg ccgcgcccat
     1081 ggccgcgaca cgggtgacag gaagcggccc ctcgtcgcgg atctgctcgg cgaggctctg
     1141 accgtcgacg tactccatca ccagccagtg cgcgtcgtcc tcgtcgacga tgtcgtacac
     1201 gctgacggtg tgctggtcgt tgagggaggc tgcgatccgg gcctcgcgca tggcccgggc
     1261 ggctgccgct ggttctccag gaagggcgcc cacgcgtttg atggccacct cgcgcccgag
     1321 cacggtgtca cgggccagcc acacagtgcc catgccgccg ctaccgatgg ctcggagcac
     1381 ctcatagcgt ccggcgatca cctggggatg cacgcggtcc atcctctcgt cgggtagggc
     1441 ctctcatcgg gcagggcctc tcgtcgggcc agggttcacc ctacgaccct ggcgccatcc
     1501 ttgacactca gccgagggct gccacgacct ggtccgccgc ggcatacggg tcggtcgcgc
     1561 cgtccacgac ggcggcggcg agctcgtcca cgccgttgcc gtgacgcagg tcgcccatct
     1621 tggcacgcag ctgctgcagg gcgatggact cgatctcgtc gccggcacgg cggatgcgcc
     1681 gggctcggag ctcaccggcg ctttccatcc aggacgtgtg cttctcgatc gcctcgacga
     1741 cctcgtcgat gccctgtcct tgcgccgcaa cggttttcac cacggggggc cgccacaggt
     1801 tgggttcggt ccggtcgcca agggagatca tgtgccggat gtcgcgaacc gtcgcgtccg
     1861 ctccgtcgcg gtcggccttg ttcacgacga acacgtcgcc gatctccagg atgcccgcct
     1921 tggccgcctg gatgccgtcc cccatgccgg gcgccagcag gacgatggtg gtatcggcca
     1981 ggctggcgat ctcgacctcg gactgtccga cgccgacggt ctcgatgagg atcacttcgc
     2041 agccggccgc gtccagcacc cgcagtgctt gcggcgtcgt ccaggacagc ccaccgaggt
     2101 ggccacggct ggccatggag cggatgtaca cctcggggtc gagggcgtgg tcctgcatgc
     2161 gcacgcggtc acccagcagg gctcccccgg agaacggtga cgacgggtcg accgccagca
     2221 cgccgacgcg cttgccctga gcccggtatg ccgccacgaa cgcgttggtg gacgtggact
     2281 tgccgacacc cgggcttccg gtgatgccga tgatgtgggc gttgcccgag tggggggcca
     2341 gggtcgccat cacctcgcgc agtgccgggt gggcgtcctc gacgagagag atcaggcgcg
     2401 cgacggcccg aggcgaccct gccctggccg actcgaccag ggcagggaca tcaacggtgc
     2461 ggggagccaa gtgcgggcct caggaagcgt cagcagagcg cggaacacgc acgatgaggg
     2521 cgtcaccctg gccaccgccg ccacataggg cggccgcgcc gacaccgcca ccacggcgct
     2581 ggagctccag ggccaggtgc agggcgatgc gggcgccgga catgccga
//
LOCUS       DASYFY010000138         2949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_745692, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000138 DASYFY010000000
VERSION     DASYFY010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_745692"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..993)
                     /locus_tag="VGN19_02585"
     CDS             complement(<1..993)
                     /locus_tag="VGN19_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194803.1"
                     /translation="MRKGPRRFVVTRLDQPPLASAKAPADVRAVCISHGLAPIDLYDF
                     DRSTALSRIWGSVRSALQLVASAARLVSADDVVVQYPVGRINELILARMKLGSRSVCI
                     VHDLEMLRRPASARREEATLSRFDVVVAHSEAMADVVRATQPGRSVVVLEAFDFLGTR
                     PTLPSAARPSCLYIFGNLKPDKAGYLYRLDTSDATPMVEVYGPHCEVDLLPNGVRWNG
                     VLDPDQPSLGEIRGFGLVWDGDSPSTLAGPVGEYLKYNAPHKLSLYLALGIPVIVPSA
                     AAIAPVVTRYGLGVCVASVEEALRVVESCSESRWEQLVQSARDGQRRVRSGEFLH"
     gene            complement(1012..2172)
                     /locus_tag="VGN19_02590"
     CDS             complement(1012..2172)
                     /locus_tag="VGN19_02590"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7194804.1"
                     /translation="MSSVSVVIPCYNYGHYLEEAVASVLDDQPGVDVRVLIIDDASTD
                     DSAEVARTLAARDPRIEVIVHESNKGHIATYDEGLLGWADGDYCVLMSADDRLTRGAL
                     RRAADLLDAHPGVGFVYGSVIWFSDGLPVPAPRTDVRGWSVWSGRQWLEARFRHAQSG
                     ITSPEVVVRTSLQKQVGGYDPRLPHLADTQMWLRMAAHADVGYLRGVDQAYYRRHAGN
                     MSTAYTPVPTMRQYRLAYESALECFGDSVPNRQHLSELVHRRLAWEALVAAARAYDRG
                     RTPDTPVDDLVSFARDCWPRSDKLPIYRTLQLRRRIGLRGMRYLKPLVLPFDILRRGG
                     SWWTRGSGWNGPNRSGLWRSATNLLEGALLVRPSERLSVRQGGLGRRPLSTE"
     gene            complement(2248..>2949)
                     /locus_tag="VGN19_02595"
     CDS             complement(2248..>2949)
                     /locus_tag="VGN19_02595"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7194805.1"
                     /translation="AYIFISGSQRDLMEDLDLPQERMFVKHNFVVDPPAVPRTPQHQV
                     AFVGRLDAAKGIPLLLQGWDGFRARRPRSGLRLVVVGGGPMEAAVRAWAASRPAVEVT
                     GLLPREEAVGVLAHSLGAVVTSQWEETFGLVAVEAMAAAVAPIAAARGSFPELITHGV
                     DGLLVQPGDPAALADALGEADRDPQGFVAMGRRARETYERRFRPETNVDQLLDIYRFA
                     LSHPVGATAKAPSDA"
BASE COUNT          519 a          995 c         1002 g          433 t
ORIGIN      
        1 gtggaggaac tctccggagc ggacgcggcg ctgaccatct cgcgctgact ggaccagctg
       61 ctcccacctc gactcactgc agctctcgac gacccgcagc gcctcctcga ccgacgcgac
      121 gcagacgccc aggccgtagc gcgtcacgac cggtgctatg gcagccgccg acgggacgat
      181 gaccggaatc cccagtgcca ggtagaggct gagcttgtgc ggagcgttgt acttcaggta
      241 ctcgcccaca gggccggcca gtgtcgacgg ggagtcgccg tcccagacca gcccgaagcc
      301 tcggatctcc cccaggctcg gttggtccgg gtcgagcacg ccgttccatc gaacaccgtt
      361 cgggagcaga tccacctcgc agtgaggacc gtagacctcg accatcggag tggcatcgct
      421 ggtgtccagc ctgtagaggt acccggcctt gtccggcttc aggttcccga agatgtagag
      481 acagctcggc cgcgccgcag agggaagtgt cggacgagtg ccgaggaagt cgaacgcctc
      541 gagcacgacg acggaccggc ccggctgcgt ggcccgcacg acgtcggcca tcgcctcgct
      601 gtgtgcaacg acgacgtcga accggctcag cgtcgcctcc tcgcgccgcg cggaagccgg
      661 tcgccggagc atctcgaggt cgtgcacgat acagacggac cgcgagccca gtttcatcct
      721 ggccaggatc agctcgttga tgcgtccgac aggatattgc acaacgacgt catcagccga
      781 aaccagccgc gcggcggacg caaccagctg gagcgccgac cgcaccgacc cccagatgcg
      841 gctcaaggcc gtcgaccggt cgaagtcata caggtcgatc ggagccagcc cgtggctgat
      901 acagacggca cgcacgtccg ccggcgcctt ggcgctggcc agcggcggct gatccagccg
      961 ggtgacgacg aagcggcgcg gtcccttcct catggtcatg gtctttccgt tttactcggt
     1021 ggacaacgga cgccggccga gaccgccctg gcgcacgctc agccgctcag acgggcgcac
     1081 gagcagcgcg ccctccaaga ggttggtggc cgagcgccat agcccggaac gattggggcc
     1141 gttccaccca gaccccctgg tccaccacga tccacccctg cggaggatgt cgaacggcag
     1201 gaccaacggc ttgagatatc gcatcccccg gagaccgatg cgccgacgga gttgcagggt
     1261 tctgtagatg gggagcttgt ccgaccgtgg ccagcagtcg cgtgcgaatg acaccaggtc
     1321 gtcaacgggg gtgtccggag tgcggccgcg gtcataggca cgtgctgcgg ccacgagcgc
     1381 ctcccatgcc agccgtcggt ggaccagctc agagaggtgc tgacggttcg gcacactgtc
     1441 gccgaagcac tcgagagccg actcgtaggc caagcggtac tggcgcatcg tcgggaccgg
     1501 cgtgtaggcc gtcgacatgt tgccggcatg cctgcggtag tacgcctggt cgaccccacg
     1561 caggtacccc acatctgcgt gcgcggccat acgcagccac atctgggtgt cggccagatg
     1621 gggaagtcgc gggtcgtaac cacccacctg cttctggagt gacgtgcgca ccacgacctc
     1681 tggggacgtg atgccgctct gcgcatggcg gaaccgtgcc tcgagccact gccgtccgct
     1741 ccataccgac cagccacgaa cgtcggttcg cggggcaggc acggggaggc cgtcgctgaa
     1801 ccagatcacg ctcccgtaga cgaagcccac gcccggatgg gcgtcgagca ggtcagctgc
     1861 gcgccgcaag gctccccggg tgagccggtc gtccgccgac atgagcacgc agtagtcccc
     1921 gtctgcccag ccgagaaggc cctcgtcata ggtggcgatg tggcccttgt tggactcgtg
     1981 gacgatcacc tcgatgcggg ggtcacgagc tgccaacgtg cgagcaacct cggcgctgtc
     2041 gtcggtcgag gcgtcgtcga tgatcagcac tcggacatcg acgccaggtt ggtcatccag
     2101 gacgctggcg acggcttcct cgaggtaatg accgtagttg taacacggga tgacgacact
     2161 gactgagctc atgagtcctc cactacatag gtctctggcg ctggagacag gactgggttc
     2221 acgagagccg accgacactc ccagtcgtca ggcatcggat ggggccttgg ctgtcgcgcc
     2281 taccgggtgg gacagcgcga aacggtagat gtcgaggagc tggtcaacgt tggtctccgg
     2341 tcggaagcga cgttcgtagg tctcacgagc ccgccggccc atcgcgacga acccctgggg
     2401 gtcgcggtcg gcctcgccga gggcatccgc gagcgcagcc gggtccccgg gctggacgag
     2461 gagcccgtcg acaccgtggg tgatgagctc cgggaaggac ccccgagcgg ccgcgatggg
     2521 agcaaccgcg gccgccatgg cctcgaccgc gaccaggccg aaagtctcct cccactggga
     2581 ggtcaccaca gcgccgaggg agtgcgcaag caccccgacc gcctcctccc gtggcaggag
     2641 cccggtgacc tcgacggcgg gacgggatgc cgcccaggct cggaccgcag cttccatagg
     2701 gccgccgccc acgaccacga gccgcagccc ggagcggggc cgtcgggcgc ggaagccgtc
     2761 ccacccctgg agcagcagcg ggatcccttt ggcggcatcg agtcgcccca cgaaggcgac
     2821 ctggtgttgg ggagtgcgcg gcacggcagg agggtcgacg acgaagttgt gcttgacgaa
     2881 catccgctcc tgaggcaggt cgaggtcctc catgaggtca cgctgcgagc cggagatgaa
     2941 gatgtaggc
//
LOCUS       DASYFY010000139         1948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_745735, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000139 DASYFY010000000
VERSION     DASYFY010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_745735"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..1166
                     /locus_tag="VGN19_02600"
     CDS             60..1166
                     /locus_tag="VGN19_02600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEV7194806.1"
                     /translation="MTTEVSPQVPGRSDMEAAVQVIHDNADRLFLWDYERDRGQLVTL
                     YNKAMGSQWNSVTDLDWSIEVDPERLVAEQDSPLLAVARVAGTLPGSPMAKWTEKEYG
                     QLGIEFFKANLSQFMHGEQGAMMTAAKIVETVPWIDAKYYASTQTMDEARHTEVFAKY
                     LRTKLGDAYPMSPFLKSQIWSLLEDSRWDIAYLGMQIVIESLALAAFGDMLRRTQEPL
                     LTKLLRYVMSDEARHVAFGVLTLSELYRDMSEADLKERQEFLVDATLNSRSRATTPEV
                     WERMGTTADAVFPFIIEAAQKAQLNPMRGFARGFFAKLVPNVRKLGLLDANDGYLRAK
                     WGEAGLLEFEFADDTGSDYESYDAVAQDRAGAVD"
     gene            complement(1225..>1948)
                     /locus_tag="VGN19_02605"
     CDS             complement(1225..>1948)
                     /locus_tag="VGN19_02605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194807.1"
                     /translation="SAGGTAWALVFRTVSSPVSLREALRIYRREQTGKVIATLRNKLP
                     APGVYTYRTIGGEGLNIVGVQRSFPSTTAMIVAGGSCATVSWVPIVEHAEATTLCSGP
                     AGALTVPRLVTDESIAGSTTTATVRCPATAYVLPPAARPGERWGVTCSLASPAEKVVL
                     EGEALGPATVVVGGHTLSVEHTRLVFTYDGTDHGTNPTDFWIVPSSGLIAREKESVAM
                     TQGGVLYNEGMDATLTRLDPTR"
BASE COUNT          317 a          647 c          695 g          289 t
ORIGIN      
        1 cgacctggtg gccaaggcgg cccccaacgc caacatgggg ggacggaggg ggtaaggcaa
       61 tgacaaccga ggtgagccct caggtgccgg gccggagcga catggaggca gccgtccaag
      121 tcatccatga caacgcggac cggctcttcc tgtgggacta cgagcgggac cggggccagc
      181 tcgtcacgct ctacaacaag gccatggggt cgcagtggaa cagcgtgacg gacctcgact
      241 ggtcgatcga ggtcgacccc gagcggctgg tggccgagca ggacagcccg ctgctcgccg
      301 tggcccgcgt cgccggcacc ctgcccggct cgcccatggc gaagtggacg gagaaggagt
      361 acgggcaact cgggatcgag ttcttcaagg cgaacctgtc gcagttcatg cacggcgagc
      421 agggagccat gatgacggcg gccaagatcg tcgagacggt gccgtggatc gatgccaagt
      481 actacgcctc gacccagacc atggacgagg cgcggcacac cgaggtcttc gcgaagtatc
      541 tccgcaccaa gctcggcgac gcctatccca tgagcccctt cctcaagtcg cagatctggt
      601 cgctgctcga ggactcccgt tgggacatcg cctacctcgg gatgcagatc gtcatcgagt
      661 cgctggcgct ggccgccttc ggcgacatgt tgcggcggac ccaggagccg ctgctgacga
      721 agctgctgcg ctacgtgatg tccgacgagg cccgccacgt cgcgttcggc gtcctcacgc
      781 tgtccgagct ctaccgcgac atgagcgagg ccgatctgaa ggaacgccag gagttcctcg
      841 tggacgccac cttgaactca cggtcgcggg cgacgacgcc cgaggtgtgg gagcgcatgg
      901 gcacgacggc cgatgcggtc tttcccttca tcatcgaggc ggcgcagaag gcacagctga
      961 acccgatgcg cggcttcgcc cgcggcttct tcgccaagct cgtcccgaac gtgcgcaagc
     1021 tcggcctgct cgatgcgaac gacggctacc tgcgcgcgaa atggggcgag gcgggcctgc
     1081 tcgaattcga gttcgccgac gacaccggct ccgactacga gtcctacgac gccgtggcac
     1141 aagaccgggc cggcgcagtc gactgaagga cgggccgttc gggtcggtgc ccgttcggtc
     1201 ggcgggtggg gtcagcgggt ggggtcagcg ggtggggtcg aggcgggtga gcgtggcgtc
     1261 catgccctcg ttgtagagaa ccccgccctg ggtcatcgcg accgactcct tctcgcgcgc
     1321 gatgaggccg ctgctcggga cgatccagaa gtccgtcggg ttcgtcccgt ggtcggtccc
     1381 gtcgtaggtg aagacgagac gggtgtgctc gacggacagg gtgtgcccac ccaccaccac
     1441 ggtggccggg cccagcgcct ccccctcgag gacgaccttc tccgcggggc tggccagcga
     1501 gcaggtgacg ccccagcgct cacccgggcg cgccgcgggc ggcagcacgt aggccgtcgc
     1561 ggggcacctg accgtcgccg tggtcgtcga cccggcgatt gactcgtcgg tgacgagcct
     1621 gggcaccgtg agcgcaccgg ccggaccact gcagagcgtg gtcgcctcgg cgtgctcgac
     1681 gatggggacc cagctcacgg tcgcacagct tccgcccgcg acgatcatgg cggtggtcga
     1741 cgggaaggag cgctggacgc ccacgatgtt gaggccctcg ccgccgatgg tccggtaggt
     1801 gtagaccccc ggagccggca gcttgttgcg cagcgtggcg atgaccttgc cggtctgctc
     1861 ccgccggtag atgcgcaggg cctcgcgcag gctcacgggt gacgacacgg tgcggaacac
     1921 gagtgcccac gccgtcccgc cggcggag
//
LOCUS       DASYFY010000140         5075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_797942, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000140 DASYFY010000000
VERSION     DASYFY010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5075
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_797942"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1336
                     /locus_tag="VGN19_02610"
     CDS             <1..1336
                     /locus_tag="VGN19_02610"
                     /inference="COORDINATES: protein motif:HMM:NF014663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyltransferase domain-containing protein"
                     /protein_id="HEV7194808.1"
                     /translation="DLTGLTPAEVVGAHTGTPWRVAFAGFTPGFAYLVGGDPRLRVPR
                     RDNPRVNVPAGSVALADEFSGIYPRASPGGWQILGFTGLRLWDLDREPPALLTPGREV
                     RFVVGRSSVVGRSSVVGRSVTPQGPSTRVSTSRSPRGARQLQDSGSTSETAVEILSCA
                     HPLLLQDGGRAGLSALGVAPSGAADRTAYGLGARLLGQGPDRAALEVLLGEVVVRAHG
                     SVTVVLTGAPAPAAIDGRPVPYAAPFLLRDGQDLSLDRPARGLRTYLSIRGGFAVAPV
                     LGSRSQDTLSGLGPGEVQSGDVLPVGRSGAQPTLDVAPVSSADPDEPVELRGTWGPHA
                     GRLAEPGLAFEGLWRIGAASDRVGLRLDPVEGSPQPGPLLAEGGEVPPLGLIRGAIQV
                     PPNGIPVVFLSDHPVTGGYPVVAVLDESSSDRAAQLRPGTTVHVVLRNLPLR"
     gene            1371..1862
                     /locus_tag="VGN19_02615"
     CDS             1371..1862
                     /locus_tag="VGN19_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2505 domain-containing protein"
                     /protein_id="HEV7194809.1"
                     /translation="MRIAKTIEYSASPDAVFAVLSDATFQEAKCAATAAIKHQASVKT
                     VGDRTVITTQRTLPSDGLPDFAKSLVGDTLTVLETQEWGPASADGSRQGTVEMAVSGA
                     PLALRGTLSLRPGGAGTIETLDSELKAKVPLIGGKIEKAAAPPIEAAISVEHETALEW
                     LAR"
     gene            complement(1968..3605)
                     /gene="pruA"
                     /locus_tag="VGN19_02620"
     CDS             complement(1968..3605)
                     /gene="pruA"
                     /locus_tag="VGN19_02620"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006562 - proline catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HEV7194810.1"
                     /translation="MDAVTQVPVPVNETVLDYAPGSPERASLEVALAELGGTSIDLPH
                     TIAGKRVMGTGKKIEVRQPHARRKLLGTMRNATVTDAQAAVDAAKAAAPGWRELSFDD
                     RAAILLKAAELLSGPWRAHLNAATMLGQSKTAYQAEIDAACELIDFWRINVHFARQIL
                     AEQPPLNAKGIWNRTDHRPLEGFVYAVTPFNFTAIAGNLPTAPALMGNTVVWKPSPTQ
                     QFAAHLTMALLEAAGLPPGVINLVTGDGLNVSKVALADRDLAGIHFTGSTPTFQHLWQ
                     EVGANLPNYRSYPRLVGETGGKDFILAHPSADPDVLRTAMIRGAFEYQGQKCSAASRA
                     YVPRSLWKKIKADLVTITNGLTQGDVTELSNFMGAVIDERAFAKHSAAIDRAHATPGV
                     DVIAGGTYDDSEGWFVRPTVLEIDDPTDESFRTEYFGPILSVHVYPDRQYDKVLDQME
                     SFAPFALTGSIIAQDRVAIADATKRLRFAAGNFYINDKPTGAVVGQQPFGGGRASGTN
                     DKAGAAQNLLRWTSARSIKETLNPPTAHAYPHMATDA"
     gene            3672..4502
                     /locus_tag="VGN19_02625"
     CDS             3672..4502
                     /locus_tag="VGN19_02625"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7194811.1"
                     /translation="MPNALDGPELAYRWAGRSDPGAATVVLLHGLGDSGDCWPDAVRR
                     WAPQYRVVGLDLLGHGRSPRFTPAQLGSPDPMEEMYAATLATVTTLVQLSGSVPVTLV
                     AHSMGAGITTALAARRPDLVRAAVLEEPAWRDPAERVQSDVVIKERLADCQRFVDDRV
                     AALAEGRRENPTWPESELEPWAEAKTQVDESFLELGVASFSSPWEDLVSAIQVPTLVL
                     VGSRSTLLGEPVRVRAERLANPAVTMRVLDAGHCVRRDAPDEYHRVVDPWLAEQLRVS
                     "
     gene            complement(4515..4928)
                     /locus_tag="VGN19_02630"
     CDS             complement(4515..4928)
                     /locus_tag="VGN19_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194812.1"
                     /translation="MTQTRIYVPLNPEGVRRLAAERTVGEPGMAVFAVTERVERAEPT
                     GDEEDWEYAALSEAVEAAGELRREVGKRVVVAADVDPSWVSDSGSTLASVRLSSPVPL
                     SLVVAFHVDESAQDEGMEDLLWYDATELDEVLRLL"
BASE COUNT          710 a         1751 c         1782 g          832 t
ORIGIN      
        1 cgacctgacc ggcctcaccc cggccgaggt ggtcggcgcc catacgggaa ccccatggcg
       61 cgtcgccttc gccggcttca ctccaggctt cgcgtacctg gtcggcggtg acccgcggtt
      121 gcgggtcccc cggcgggaca acccgcgggt gaacgtcccc gcgggctcag tcgcgctcgc
      181 cgacgagttc agtggcatct accccagagc gagcccgggc ggctggcaga tcctcgggtt
      241 caccggactc aggctgtggg acctggaccg tgagccccca gcgttgctga ctccggggcg
      301 cgaggtgcgc ttcgtcgtag gtcgatccag cgtcgtaggt cgatccagcg tcgtaggtcg
      361 gtccgtcacc ccgcagggcc cctcgacgcg ggtctcgacg tctcgctcgc ctcgtggcgc
      421 acggcagctg caggactcgg gctccacctc ggagactgcc gtcgagatcc tgtcctgcgc
      481 gcacccgctc ctgctccagg atggaggccg agcgggcctg tccgcgctcg gcgtggctcc
      541 ttcgggcgcg gcggaccgaa cggcatacgg gctgggtgct cgactcctcg ggcaggggcc
      601 cgaccgggcc gccctggaag tcctgctcgg tgaggtggtg gtgcgtgccc acggcagcgt
      661 caccgtcgtg ctcaccgggg cacccgcgcc ggccgccatc gatggcagac cggtcccgta
      721 tgccgccccg ttcctgctcc gcgacggtca ggacttgagt ttggaccgac ccgcgagagg
      781 gctgcgcacc tatctgtcga tccgcggcgg tttcgccgtg gcaccggttc tcgggtcccg
      841 gtcccaagac acgctgtcgg gcctcggccc gggcgaggtc cagtccggtg acgtcctgcc
      901 ggtgggacgg tccggggctc agcccacgct cgatgtggct ccggtgtcgt cggcggaccc
      961 cgacgagccg gttgagcttc gcggcacctg gggtccgcac gccggccggc tggccgaacc
     1021 cggtcttgcc ttcgagggac tctggcggat cggcgcagcg agtgaccgcg ttggccttcg
     1081 gctcgatccc gtggagggtt caccgcagcc tggcccgctg ctggccgagg gaggtgaggt
     1141 gccaccgctg gggctcatcc ggggcgcgat ccaggtgccg cccaacggca taccggtggt
     1201 ctttctcagc gaccatccgg tgacaggcgg ctatccggtc gtggccgtgc tggacgagtc
     1261 ctcgagcgac cgtgcggcgc agctgcgtcc cggaactacg gtccacgtgg tgctgcggaa
     1321 cctgccgtta cgctgaccag acctgcccgc ctcgccctca ggagagacga atgaggatcg
     1381 ccaagaccat cgagtacagc gccagcccgg acgccgtgtt cgccgtgctg tccgacgcca
     1441 cgttccagga ggccaagtgc gccgcgaccg cggccatcaa acaccaggcc agcgtgaaga
     1501 cagtcggcga ccgtacggtt atcacgacgc agcgcacact gccgagcgat ggactgcccg
     1561 acttcgccaa gtccctggtc ggtgacaccc tgacggtgct cgagacgcag gagtggggtc
     1621 ccgcctcggc cgatggcagc cgtcagggaa cggtggagat ggccgtctcc ggcgcgccgc
     1681 tggccctgcg cggcaccctg tcgttgcggc ccggaggagc gggcaccatc gagacgctcg
     1741 actccgagct gaaggccaag gtgccgctga tcggcggcaa gatcgagaag gccgccgcgc
     1801 cacccatcga ggccgcaatc tcggtcgagc acgagaccgc cctggagtgg ctggcccgct
     1861 gaggggcgcc accagggctc aggccccacc tgcgaaaggg cgtggaacca tccaggttcc
     1921 acgccctttc gctgccgggt cgcgctttga gcgctcggtg acgcggttca ggcgtcggtg
     1981 gccatgtgcg ggtaggcgtg cgcggtcggc gggttgaggg tctccttgat cgaccgcgcg
     2041 ctggtccagc gaagcaggtt ctgcgccgcg ccggccttgt cgttggtgcc cgaggcccga
     2101 ccgcctccga acggctgctg ccccaccacc gcacccgtgg gcttgtcgtt gatgtagaag
     2161 ttgcccgccg cgaacctgag ccgcttggtg gcgtcggcga tggccacgcg gtcctgggcg
     2221 atgatcgagc ccgtcagcgc gaagggcgcg aaggactcca tctggtccag caccttgtcg
     2281 tactggcggt cggggtagac gtggaccgac aggatcggcc cgaagtactc cgtcctgaag
     2341 gactcgtcgg tcgggtcgtc gatctccagg acggtgggtc ggacgaacca gccctcggag
     2401 tcgtcgtacg tgccgcccgc gatgacgtcg accccagggg tcgcgtgcgc gcggtcgatg
     2461 gctgccgagt gcttcgcgaa cgcacgttcg tcgatgaccg cacccatgaa gttcgacagc
     2521 tcggtgacgt caccctgcgt cagcccgttg gtgatcgtga ccaggtcagc cttgatcttc
     2581 ttccacagcg aacgcgggac gtacgcgcgc gaggcggccg agcacttctg cccctggtac
     2641 tcgaaggcac cgcgaatcat ggctgtgcgc aacacatccg ggtcggctga cgggtgcgcc
     2701 aggatgaagt ccttgccgcc ggtctcgccc accaggcgcg ggtagctgcg gtagttcggc
     2761 aggttggccc cgacctcctg ccacaggtgc tggaaggtcg gcgtcgaacc ggtgaagtgg
     2821 atgcctgcga ggtcgcggtc cgccagggcg accttggaga cgttgagacc gtcgccggtc
     2881 accaggttga tcacacccgg gggcagaccg gccgcctcca gcagcgccat cgtcaggtgc
     2941 gccgcgaact gctgggtggg actgggcttc cacacgacgg tgttgcccat gagtgccggc
     3001 gccgtcggca ggttgcccgc gatggccgtg aagttgaacg gcgtcaccgc gtagacgaaa
     3061 ccctcgagcg ggcgatggtc cgtgcggttc cagatcccct tggcgttcag tgggggctgc
     3121 tcggcgagga tctggcgcgc gaagtgcacg ttgatccgcc agaagtcgat gagctcgcac
     3181 gccgcgtcga tctcggcctg gtacgcggtc ttggactgtc cgagcatcgt cgccgcgttg
     3241 aggtgggcac gccacggccc ggacagcagc tccgctgcct tgagcaggat ggcggcgcgg
     3301 tcgtcgaagg acagctcgcg ccaacccggg gcggcggcct tcgccgcatc aacagccgcc
     3361 tgcgcgtcgg tgacggtcgc gttgcgcatg gtgcccaaca gctttcgtct ggcgtgcggc
     3421 tgacggacct cgatcttctt gccagtcccc atcacccgct ttccggcgat ggtgtgggga
     3481 aggtcgatgc tcgtccctcc cagctcggcc agcgcaacct cgagagaagc ccgttcgggg
     3541 ctccccggcg catagtcgag aacggtttcg ttgacgggga cgggcacctg ggtgacggca
     3601 tccatggcgt gcggctcctc ggggttgctt cggtagcggt cgcttggcaa ggcgcaccta
     3661 tggtgtcacg tatgccgaat gcactcgacg ggcccgagct cgcctaccgc tgggcgggcc
     3721 gaagcgaccc tggcgcagcc acggtggtgc tgctgcatgg cctgggtgac tccggtgact
     3781 gctggcctga cgcggtgcgc cgctgggcgc cgcagtaccg ggtcgtcggg ctggacctgc
     3841 tcggccatgg ccggtcgcct cggttcaccc ccgcgcagct gggctccccc gacccgatgg
     3901 aggagatgta tgccgcgacg ctggccaccg tgacgacgtt ggtgcagctg agcggcagcg
     3961 tcccggtcac cctggtcgcc cactcgatgg gggcgggcat caccaccgcg ttggcggcgc
     4021 gtcgcccaga cctggtccgc gcagcggtcc tcgaggagcc tgcctggcgg gatccggccg
     4081 agcgtgtcca gtcagatgtc gtgatcaagg agcgcctggc ggactgccag cgcttcgtcg
     4141 atgatcgcgt cgccgcgctg gccgagggtc gccgagagaa ccccacctgg ccggagagcg
     4201 agctcgaacc atgggcagaa gccaagaccc aggtggacga gtcgttcctc gagctcgggg
     4261 tcgcgtcctt ctcctcgccg tgggaggacc tggtctcggc gatccaggta ccgacgctcg
     4321 tgcttgtcgg ctcgcgttcc acgctgctcg gcgaaccggt ccgggtccgc gccgagcgtc
     4381 tcgcgaaccc agccgtcacc atgcgcgtcc tcgatgccgg ccactgtgtc cgccgcgatg
     4441 cacccgacga gtaccaccgc gtcgtcgacc cctggctggc cgagcagctg cgggtcagct
     4501 gagccagctg ctgatcagag gagtcggaga acctcgtcca gctcggtggc gtcgtaccag
     4561 agcagatcct ccatgccttc gtcctgcgcc gactcgtcga cgtggaaggc cacaaccagc
     4621 gacaggggca cgggcgacga gaggcgcacc gatgccaggg tgcttccgct gtcgctgacc
     4681 cagctgggat cgacgtcggc ggcgaccacg acccgcttgc ctacctcacg gcgcagctcc
     4741 ccggccgctt cgaccgcttc tgagagggcg gcatactccc agtcctcttc gtccccggtc
     4801 ggttcggcgc gctccactcg ttcggtgacg gcgaacacgg ccattcctgg ctcaccgaca
     4861 gtgcgctcag ccgccagccg acgcaccccc tccgggttga gcggaacgta gattcgcgtc
     4921 tgggtcatcc cacatcctcg aagtcggaac ggtcgggcag cggtgccggg tcgcgcaggg
     4981 ccacggcaga ggtccgtagc gaggtttcga tcactagggg ccgacgcgtg acgtccatga
     5041 ggttggtacc gaacgcctcc agatcctcct cgccc
//
LOCUS       DASYFY010000141         1648 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1271841, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000141 DASYFY010000000
VERSION     DASYFY010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1271841"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1211
                     /locus_tag="VGN19_02635"
     CDS             <1..1211
                     /locus_tag="VGN19_02635"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF024826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7194813.1"
                     /translation="EVIDESDLDQYIRYQHLATAASWSTEDRRWTVEVTRGDNGQRLR
                     FTTGFLWMCQGYYNHAKPYRPEWDGMDRFQGLVVHPQRWPEDLDLAGKRVVVIGSGAT
                     AATLIPAIAEKAQHVTMLQRSPTYFFAPPTKHELAVQLEPLDLPDEWMHEIMRRQYVS
                     QQQTLARMSFEAPDELHAFLIESMRPLLPEGFDIERHFTPRYRPWQQRIAVVPDGDLF
                     AALREGKASIVTDTIDTFTEHGITVSSGDEIPADIVVTATGFNLSVFGDVAFTVDGEP
                     VDFTQHLTWRGVMISGLPNMAYTFGYFRHSWTLRVDLVCDLVGRLLTTMQDKGATMVV
                     PTPRPQDTDMQLRPWCDPENFNSGYVMRSQHIMFKQGDREPWTHMLEHDEEREILPKA
                     DLEDGTLVYR"
     gene            complement(1105..1605)
                     /locus_tag="VGN19_02640"
     CDS             complement(1105..1605)
                     /locus_tag="VGN19_02640"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEV7194814.1"
                     /translation="MHGDFRIDNTLLGKQMPPTVQAVLDWELSTLGEPLADLGLFLFY
                     WREPTDARPALTPAPTWTACRDGSHWPTSSPRLSPRASRPGYRPGRWPGRSSAISAQR
                     STGSPPRESRCSPEGGFSPGGTLPDSAAGFSGRRASRPRGLPWAGSRAPRRAPACAST
                     ARGRPA"
BASE COUNT          277 a          597 c          531 g          243 t
ORIGIN      
        1 acgaagtcat cgacgagtcc gacctcgacc agtacatccg ctaccagcac ctggccaccg
       61 cggccagctg gtccaccgag gaccgccggt ggaccgtcga ggtcacccgg ggcgacaacg
      121 ggcagcggct gcggttcacc accggctttc tgtggatgtg ccagggctac tacaaccacg
      181 ccaagcccta ccggcccgag tgggacggca tggaccgctt ccagggtctg gtcgtgcacc
      241 cccagcggtg gcccgaggac ctcgacctcg cgggcaagcg cgtcgtggtg atcggctcgg
      301 gcgccacggc cgcgacgctg atccccgcga tagccgagaa agcccagcac gtgacgatgc
      361 tgcagcgctc ccccacctac ttcttcgccc cgcccacgaa acacgagctc gccgtgcagc
      421 tggaaccact cgatctcccc gatgagtgga tgcacgagat catgcgccgg cagtacgtct
      481 cgcagcagca aacgctggcc cggatgtcgt tcgaggcgcc cgacgagctg cacgcattcc
      541 tcatcgagtc catgcgcccg ctgctgcccg agggcttcga catcgagagg catttcaccc
      601 cccgctaccg gccgtggcag cagcgcatcg ccgtcgtccc ggacggcgat ctgttcgcgg
      661 cgctgcgcga ggggaaggcc tcgatcgtca ccgacaccat cgacacgttc accgagcacg
      721 ggataacggt cagctccggt gacgagatcc cggccgacat cgtcgtcacc gccacgggtt
      781 tcaacctgtc ggtcttcggc gacgtcgcgt tcaccgtcga cggcgagccg gtggacttca
      841 cgcagcatct cacctggcgc ggcgtcatga tcagcggctt gccgaacatg gcctacacgt
      901 tcggctactt ccggcacagc tggaccctgc gggtggacct ggtctgcgac ctggtggggc
      961 gcctgctgac caccatgcaa gacaagggcg ccacgatggt ggtccccacg ccgcgacccc
     1021 aggacacgga catgcagctg cggccgtggt gcgatccgga gaacttcaat tccggctacg
     1081 tgatgcgctc gcagcacatc atgttcaagc agggcgaccg cgagccgtgg acgcacatgc
     1141 tggagcacga cgaggagcgc gagatcctgc ccaaggcaga cctcgaggac gggacgctcg
     1201 tctaccgctg aatccggccg ctgagtccgg cagcgtcccg cccggcgaga agccgccctc
     1261 aggtgagcag cgcgactccc tcggcggcga tccggtcgac ctctgcgccg atatcgccga
     1321 actcctgccc ggccatcgac ccggcctgta cccgggccgc gatgccctgg gcgataaccg
     1381 cggacttgaa gtgggccagt gcgacccatc tcggcaggct gtccaggtcg gcgccggcgt
     1441 cagcgccggt cgcgcgtcag ttggctcgcg ccagtagaac aggaacaggc cgaggtcggc
     1501 cagcggctcc cccagggtgg acagctccca gtccagcacg gcctgcaccg tcggcggcat
     1561 ctgcttgccc agcagggtgt tgtcgatccg gaagtccccg tgcacgatcg ctcccccggg
     1621 cccccggggc ggttcggcgc gcagcagg
//
LOCUS       DASYFY010000142         3820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_482953, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000142 DASYFY010000000
VERSION     DASYFY010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482953"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VGN19_02645"
     CDS             <1..338
                     /locus_tag="VGN19_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194815.1"
                     /translation="SWRPQAAMYDWAFAHAASARPVGELVAPGSVMATPSATTTTAAP
                     SGLAGLAPAVGDRAAATLPSSHLLSRAVAPWVGLGGLAAALLLVALFAGRAARRPRRR
                     SAGAGRRRH"
     gene            complement(341..1423)
                     /locus_tag="VGN19_02650"
     CDS             complement(341..1423)
                     /locus_tag="VGN19_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEV7194816.1"
                     /translation="MNTLKQWWERLQATPPGRAWKRYNDARGGLLAGGVTYFAFLSIF
                     PIMALAFAVFGVLLRGHPQWLTDIHRYASTALPGFVQDASGKGGIIPLTLPGRGTLAT
                     VGIIGVVGLLFGGLGWLVALRDGLRAIFGVGPTSGNVVTDKLRDIGLMLSIGFVILLS
                     AVVAGFANGAAGFAAEHMGLGSKGWVVTVVGIVVQAVLNTAVVALILRLLTGLDLSWQ
                     TLRSGATFGGIGLTLLQLFGASLIKGTTHNKVFASIAVVVGLLVFLNFISRLLLVAAA
                     WTANDVELSTPRAQLGAGQRLKATEGPDEGLPTGFKARTDAGLPTFSQRAADRTSLTA
                     GAVLGAVAAVVVGSTLRGLRSLALRR"
     gene            complement(1478..1993)
                     /locus_tag="VGN19_02655"
     CDS             complement(1478..1993)
                     /locus_tag="VGN19_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HEV7194817.1"
                     /translation="MPTIGVSIAIPSPHAEMLQAKRASFGDPLADLIPTHVTLLPPTE
                     IGDDAMDAAVAHLEHVATHGHSFSMVLRGTGTFRPVSPVVFVQVSGGLAECELLERAV
                     RRGPLTRELDFYYHPHVTVAHHVSKDHLDRAFEDLADFECSFEVREFYLYEHGADQVW
                     RPVRSFALNGG"
     gene            complement(2004..3035)
                     /gene="trpS"
                     /locus_tag="VGN19_02660"
     CDS             complement(2004..3035)
                     /gene="trpS"
                     /locus_tag="VGN19_02660"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEV7194818.1"
                     /translation="MAAMSTPTASAALPRILSGMQPTSDSLHLGNYIGALVNWVGLQH
                     DFDAYYFVADLHALTVPTDPEVLRHRSRITAAQFIAGGVDPKRSAVFCQSHVAEHAEL
                     GWVMNCLTGFGEASRMTQFKDKVAKGHSANVGLFAYPMLMAADILMYDAAYVPVGEDQ
                     RQHLEITRDLAERFNTRFGETLVVPQPHIVKESAKIMDLQDPTSKMSKSSSSDKGLIS
                     LMDEPGRLAKKIRSAVTDTDGEIRYDVEHKAGISNLLVIHSVLSGRRIEELEREFAGQ
                     GYGDLKKAVAEVVLEAVGPFRERMTELLDDPAELDRMLADGADRAREVAAATMNRVRD
                     RVGLLPSIR"
     gene            3171..>3820
                     /locus_tag="VGN19_02665"
     CDS             3171..>3820
                     /locus_tag="VGN19_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019482203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HEV7194819.1"
                     /translation="MSYRRTTRTLADGREIIYFDDSPGAPPREAVDTRPLGQRAAAGQ
                     VRYDALVGDWVAVAGHRLNRTFLPPKDECPLCPTGTGSAPSEVPESSYDDVVFENRFP
                     SYATPTYAGPSQAPASDGRIPLAGTPEPFRTAPAQGRCEVVCFTSDHDSTFADLTPAR
                     ARTVIDVWADRTVELSALPGVEQVFCFENRGREIGVTLAHPHGQIYAYPTIPQRTG"
BASE COUNT          615 a         1345 c         1289 g          571 t
ORIGIN      
        1 cttcttggcg cccccaggcg gcgatgtacg actgggcgtt cgctcatgcc gcctccgccc
       61 ggcccgtcgg tgagcttgtc gcgcccggct cggtcatggc cacgcccagc gcaaccacca
      121 ccacggccgc cccgtcagga cttgccggcc tggcgccggc ggttggcgat cgggcagcgg
      181 cgaccctgcc cagctcacac ctgctatcgc gtgcggtggc cccgtgggtg gggctcggcg
      241 gactggcggc tgcgctgctc ctcgtggccc tgttcgccgg ccgcgctgcc cgcaggcccc
      301 gccgtcgaag cgcaggagcc ggccgccgcc gacactgagg tcagcggcgc agcgccagcg
      361 agcgcagccc gcgaagggtg cttcccacca ccactgccgc gaccgcaccc aacaccgccc
      421 ccgccgtcaa ggacgtgcga tccgcggctc gctggctgaa cgttggcaga ccggcgtcgg
      481 tccgcgcctt gaacccggtc gggagaccct cgtctggccc ctcggtggcc ttgagccgct
      541 gccccgcgcc gagctgagct cgcggggtgg agagctcgac gtcgttggcg gtccatgcgg
      601 ccgctacgag caggagccgt gagatgaagt tgaggaagac tagcagtccg acgaccacgg
      661 cgatcgaggc aaacaccttg ttgtgcgtgg tccccttgat caggctcgcg ccgaacagct
      721 gcaacagggt cagtccgatg ccgccgaagg tcgcaccgct gcgcagggtc tgccaggaca
      781 ggtccagtcc ggtgagcagc ctcaggatca gcgcgacgac cgccgtgttg agcaccgcct
      841 ggacgacgat cccgacgacc gtgaccaccc accccttgct gcccaggccc atgtgctcgg
      901 cggcgaatcc ggcggcgccg ttcgcgaagc cggccaccac agccgacagc aggatgacga
      961 acccgatgga cagcatcagg ccaatgtcac gcagcttgtc cgtcacgacg ttccccgacg
     1021 tcggaccgac gccgaagatg gcccggagcc cgtcgcgcag cgcgaccaac cagcccagcc
     1081 caccgaacaa caggccgacc acgccgatga tgccgaccgt ggccagagtg ccgcgtcccg
     1141 gcagcgtcag cgggatgatc ccacccttgc cgcttgcgtc ctggacgaag ccgggcagcg
     1201 cggtgctggc atagcggtgg atatcggtca accactgcgg atgaccgcgc aggagtacgc
     1261 cgaagaccgc gaaggcgagc gccatgatgg gaaagatcga caggaaggcg aagtaggtga
     1321 cgccgccggc cagcagtcca ccgcgcgcgt cgttgtagcg cttccaggct cggcccggcg
     1381 gggtcgcctg gagccgctcc caccactgct tgagcgtatt catgtcaggg agcccgtctc
     1441 gatcatgtga tggtgtccag tcgtccgccg ttgagggtca tccgccattg agggcgaatg
     1501 agcggaccgg gcgccagacc tggtccgcgc cgtgctcgta caggtagaac tcgcgcacct
     1561 cgaagctgca ctcgaagtcg gccaggtcct cgaaggctcg gtccagatgg tccttcgaga
     1621 cgtggtgcgc cacggtcaca tgcgggtggt agtagaagtc cagctcgcga gtcagggggc
     1681 cgcggcggac cgcacgctcc aggagctcgc actccgccag gccaccggag acctgcacga
     1741 agaccaccgg cgagaccgga cgaaacgtgc cggtgccccg cagcaccatg gagaacgagt
     1801 gcccatgcgt ggcgacatgc tccaggtgag ccaccgccgc gtccatcgcg tcgtcgccga
     1861 tctccgtggg cggcaggagc gtcacatgcg tggggatcag gtccgccagg gggtcgccga
     1921 aggaggcccg cttcgcctgc agcatctctg catgcggaga ggggatggcg atcgacacac
     1981 cgatcgtagg cacggtcgcg accctaccta atgctcggca gcagccccac gcggtcgcga
     2041 accctattca tggtggccgc ggccacctcg cgcgcgcgat cggccccgtc ggccaacatc
     2101 cggtcgagct cggcggggtc gtcgagcagc tcggtcatcc gctcgcggaa cggtcccacg
     2161 gcctcgagta ccacctctgc cacggccttc ttgaggtcgc cgtaaccctg gcccgcgaac
     2221 tcccgctcga gctcctcgat ccgccgcccg gacagcaccg agtgaatgac cagcaggttg
     2281 gagatgcctg ccttgtgctc gacgtcgtag cggatctcac catcggtgtc ggtgaccgcc
     2341 gaacggatct tcttggcgag gcgcccgggc tcgtccatca gcgagatgag gcccttgtcc
     2401 gagctggagc tcttgctcat cttcgaggtg gggtcctgga ggtccatgat cttggcggac
     2461 tctttgacga tgtgcggctg aggcaccacg agggtctcgc cgaaccgcgt gttgaaccgc
     2521 tcggcgaggt cccgggtgat ctcgaggtgc tggcgctggt cctcgcccac cggcacgtag
     2581 gccgcgtcgt acatgaggat gtcggccgcc atcagcatcg gataggcaaa caggccgaca
     2641 ttggcgctgt gtcccttggc gaccttgtcc ttgaactggg tcatccgact cgcctcgccg
     2701 aaaccggtga ggcagttcat cacccatccc agctcggcgt gctcagccac gtggctctgg
     2761 cagaacacgg ccgaccgctt ggggtccacg ccgccggcga tgaactgtgc ggccgtgatc
     2821 cgcgagcggt gccgcagcac ctccgggtcg gtgggcacgg tcagcgcgtg caggtccgcg
     2881 acgaagtagt aggcgtcgaa gtcgtgctga aggcccaccc agttgaccag cgcgccgatg
     2941 tagttaccga ggtgcagcga gtcgctggtg ggctgcatgc cggacaggat ccggggcagc
     3001 gccgcggagg cggtgggcgt ggacatggcc gccattgtgt caggtgccgc gggccaggtc
     3061 agatggagga gaagtagccc cctggagagc gagaacgtcg atcaggttga catcgctggt
     3121 gcacctcgcc agggtcgacc tgccaccgat ggaaagggac ccgaagctcc atgagctacc
     3181 ggcgcaccac ccgcaccctc gccgacggtc gcgagatcat ctacttcgac gacagcccgg
     3241 gcgcaccacc gcgcgaggcc gttgacacgc gcccgttggg gcagcgggcg gctgcggggc
     3301 aggttcggta cgacgccttg gtcggcgact gggtcgcggt cgcgggccat cggctcaacc
     3361 ggaccttcct gccacccaag gacgagtgcc cgctgtgccc gacgggtact ggcagtgccc
     3421 cttccgaggt gccggagtcc tcctacgacg acgtggtgtt cgagaaccgg ttcccgtcgt
     3481 acgccacccc gacgtacgcc ggcccctccc aggcgcctgc atcggacggc aggatccctc
     3541 tcgccggaac cccggagccc ttccggacgg ccccggcgca ggggcgctgt gaggtcgtgt
     3601 gcttcaccag cgaccacgac tccaccttcg cggacctcac gccggcccga gcccgcacgg
     3661 tcatcgacgt ctgggcggac cgcaccgtcg agctcagcgc cctgcccggg gtggaacagg
     3721 tcttctgctt cgagaaccgt ggtcgtgaga tcggggtgac cctcgcccac ccgcacggcc
     3781 agatctacgc ctaccccacg atcccccaac ggacgggcga
//
LOCUS       DASYFY010000143         3003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_378026, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000143 DASYFY010000000
VERSION     DASYFY010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378026"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1014)
                     /locus_tag="VGN19_02670"
     CDS             complement(<1..1014)
                     /locus_tag="VGN19_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEV7194820.1"
                     /translation="MTDDFLLDDLTASITALAPELIELRRDLHAHPELSRGEVRTTGL
                     VAQRLRAAGIAVRELEVSGLVADLGAESPAYRVALRADLDALPVGERTGLDWASTTEG
                     ICHACGHDVHVAAVLGAALALQEHEERLRERGIGVRLLFQPAEEVIPGGALDVIDQGG
                     LAGVDVVYAVHCDPSLDAGSVGLRDGAITAAADRVTVHLAGRGGHTSRPHLTEDLTYA
                     LGKVVTELPTVLSRRLDPRTALALVWGEVHAGMAANVIPSTGTAAGTLRMLDPGAWSA
                     VGPLLADAVQQIVAPYAVSAVLEHIQGVPPVVNSPEAVEVFRSAAVGMGLSPVGTVQS
                     LGGE"
     gene            complement(1057..2652)
                     /locus_tag="VGN19_02675"
     CDS             complement(1057..2652)
                     /locus_tag="VGN19_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEV7194821.1"
                     /translation="MAAEVPDARSESDLPIKPVYDATALDGFDAEAKLGVPGQYPYTR
                     GVYPTMYTGKPWTMRQYAGFGTAKESNERYHELVANGTGGLSVAFDLPTQMGYDSDEA
                     ISHGEVGKVGVAIDSVDDMRTLMGGLPLGEISTSMTINAPAATLLLMYQLVAEENGED
                     PSRLAGTIQNDVLKEYIARGTYIYPPKHSLRLISDIFSYCHKELPRWNTISISGYHMA
                     EAGATPAQEIAFTLANAKEYVRTALGAGLDVDDFAPRLSFFFVARTTLLEEVAKFRAA
                     RRIWARIMRDEFGATNPKSQMLRFHTQTAGVQLTAQQPEVNLVRVALQGLGAVLGGTQ
                     SLHTNSFDEAIALPTQKAARLALRTQQVIAYETDVTKTVDPFAGSYVVESMTDALEAA
                     ANDLIQAVEDRGGAVAAIEQGFQKSEIERSAYRFALEIDHGERIVVGVNRFTLDEEDP
                     YEPLRVDPQIEVDQRERLAALRVERDNVAVEQALEAIREAARGTENLLYPMKDALRLR
                     ATGGEISHALRDVWGLYVPHETF"
     gene            complement(2782..>3003)
                     /locus_tag="VGN19_02680"
     CDS             complement(2782..>3003)
                     /locus_tag="VGN19_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TrmB"
                     /protein_id="HEV7194822.1"
                     /translation="ADDAWHDVMMNTSAVYGPLTQTLREGVAMVGGPNTQAGDRLALS
                     VAFLEFVTEEMAGLAERWDKRRAELDLLP"
BASE COUNT          441 a         1050 c         1033 g          479 t
ORIGIN      
        1 ctcgccccct agggactgca cggtgcccac cgggctcagg cccatgccga ccgctgccga
       61 tcggaaaacc tcgacggcct ccgggctgtt gaccaccggc ggcaccccct ggatgtgctc
      121 gaggacggcg ctcacggcat acggcgcgac gatctgctga accgcatcgg cgagtagcgg
      181 gcccaccgcg ctccaagcgc ccgggtccag catgcgcaag gttcctgccg cagtaccggt
      241 cgaggggatg acgttcgccg ccatcccggc atgcacctcg ccccagacca gcgcgagcgc
      301 ggtgcgcggg tcgagccggc gtgacagcac cgtcgggagc tcggtcacca ccttgccgag
      361 cgcgtaggtg aggtcctcgg tgaggtgcgg gcgggaggtg tgcccgccgc ggcccgccag
      421 gtgcacggtg acgcggtcgg cggcagcggt gatcgcacca tcgcgcagcc ccacggaccc
      481 ggcgtccagg ctcgggtcgc agtgcacggc atacacgacg tcgaccccgg ccaggccccc
      541 ctggtcgatc acgtcgaggg caccgccagg gatcacctcc tcggcgggct ggaacagcag
      601 ccgtaccccg atcccccgct cgcgaagtcg ctcctcgtgc tcctggagcg ccagggcagc
      661 cccgagcacc gccgccacgt ggacgtcatg gccgcaggcg tggcagatcc cctcggtcgt
      721 ggacgcccag tccaaaccgg tccgctcgcc gacgggcagc gcgtccaggt ccgcgcgcaa
      781 tgccacccgg tatgccggcg actcggcgcc gaggtcggcg accagtccgc tgacctcgag
      841 ctcgcggacg gcgatcccgg ccgcgcgaag tcgctgcgcg accagtccgg tcgttcgcac
      901 ctctcctcgc gacagctcgg gatgcgcgtg caggtcgcgg cgcagctcga tgagctcggg
      961 ggccagggcg gtgatgctgg cggtcaggtc gtccagcaga aagtcgtctg tcatgtcagg
     1021 gcgcactcta ccgacgagaa ccgggcgtcc taccggtcag aaggtctcgt gggggacgta
     1081 caggccccag acgtcacgca aggcgtggct gatctcgcca ccggtggcgc gtagtcgcaa
     1141 ggcgtccttc atcgggtaca gcaggttctc ggtcccccgg gccgcctccc ggatggcctc
     1201 gagggcctgc tccaccgcga cgttgtcccg ctcgacccgc aatgcggcca ggcgttcgcg
     1261 ctggtcgacc tcgatctgag ggtcgacccg cagcggctcg tacgggtcct cctcgtcgag
     1321 ggtgaaccgg ttgacgccga ccacgatgcg ctcgccgtgg tcgatctcga gggcgaaccg
     1381 gtaggcggag cgctcgatct cggacttctg gaagccctgc tcgatcgcgg cgactgcacc
     1441 gccacgatcc tcgaccgcct ggatgaggtc gttcgcggcg gcctcgagcg cgtcggtcat
     1501 cgactcgacg acgtacgaac cggcaaacgg gtcaacggtt ttggtcacgt cggtctcgta
     1561 ggcgatgacc tgctgggtgc gcagcgccag ccgggcggcc ttctgggtgg gcagcgcgat
     1621 ggcctcgtcg aaggagttgg tgtgcaggct ctgagtgccg ccgagcaccg ctccgagacc
     1681 ctgcagggcc acccgcacca ggttgacctc gggctgctga gccgtgagct ggacgccggc
     1741 cgtctgggtg tggaaccgca gcatctggct cttggggttg gtggcaccga actcgtcgcg
     1801 catgatgcgc gcccagatgc gcctggcggc ccggaacttg gccacctcct ccagcagcgt
     1861 cgtccgcgcc acgaagaaga acgacagccg gggcgcgaag tcgtccacgt cgaggcctgc
     1921 gcccagggca gtccggacgt actccttggc gttggccagg gtgaaggcga tctcctgcgc
     1981 gggcgtcgcc cccgcctcgg ccatgtggta gccgctgatg gagatcgtgt tccagcgggg
     2041 aagttccttg tggcagtaag agaagatgtc gctgatcagg cgcagcgaat gtttcggcgg
     2101 atagatgtag gtgccgcggg cgatgtactc cttgagcacg tcgttctgga tggtgcccgc
     2161 caggcgcgac gggtcctcgc cgttctcctc ggccaccagc tggtacatca gcagcagcgt
     2221 cgcggccggg gcgttgatcg tcatcgacgt cgagatctcc ccgagcggaa ggccgcccat
     2281 gagcgtgcgc atgtcgtcca cggagtcgat ggccacgccc accttgccga cctcgccgtg
     2341 cgagatggcc tcgtcggagt cgtagcccat ctgggtcggc aggtcgaacg cgacggacag
     2401 tccgccggtg ccgttggcga ccagctcgtg gtaccgctcg ttggactcct tggcggtacc
     2461 gaacccggca tactgccgca tcgtccacgg cttgcccgtg tacatcgtgg ggtacacccc
     2521 acgggtgtac gggtactgcc ccgggacgcc cagcttggcc tcggcatcga acccgtcgag
     2581 ggccgtggcg tcgtagaccg gcttgatcgg caggtcggac tcggagcgtg cgtcagggac
     2641 ttcggcggcc atgtgccgga gcctaatgcg cgggtatgcc gtcgcctcgc cacccgtggt
     2701 caacctcacc caccctggct cctccgactt cttgccctca atccaccgtt ttgaccgcgg
     2761 attccccggg aaacggtcga ctcagggcaa taagtcgagc tcggcgcgcc gcttgtccca
     2821 acgctcggcc agcccggcca tctcctcggt gacgaactcg aggaaggcga cgctgagcgc
     2881 gagcctgtcg ccggcctggg tgttcgggcc acccaccatc gccaccccct cgcgcagggt
     2941 ctgagtcagc ggaccgtaga ccgcggaggt gttcatcatg acgtcgtgcc aggcatcgtc
     3001 ggc
//
LOCUS       DASYFY010000144         2956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1061807, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000144 DASYFY010000000
VERSION     DASYFY010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061807"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VGN19_02685"
     CDS             complement(<1..297)
                     /locus_tag="VGN19_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194823.1"
                     /translation="MLPWLLAIVMVGAIGFGLYAWGEPTKLSPTEVTQAAPSGVGTRL
                     PIPQANPPGWHMVFRDDFNGRAVNRSLWRLYSGQPGGDPAAWWLPSHLAVANGML"
     gene            complement(423..1109)
                     /locus_tag="VGN19_02690"
     CDS             complement(423..1109)
                     /locus_tag="VGN19_02690"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEV7194824.1"
                     /translation="MPAGDVPGWHQVFADDFNGTSLDASKWNRYSGQPGGDPGGWWDP
                     RHVTVGNGLLALNGYKDPSDGGKWTTGGVSTSPGLSQTYGKYLVRFRLDSGVGIAHVI
                     LLWPSDGSWPPEVDFSEDNGANRQTDFGTLHYGANNSTIDSSLAVDLTRWHTLGVEWT
                     PGKLVYTIDGRNWATTTNANVPSVPMVLAMQTQAWACGTSTWEQCPNSTTPANVNMYV
                     DWAVAYAPAS"
     gene            1147..1275
                     /locus_tag="VGN19_02695"
     CDS             1147..1275
                     /locus_tag="VGN19_02695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194825.1"
                     /translation="MVVVLVVVLVVVLVLVLVLVVVVVAGAVVVVVVVVDDVEPPL"
     gene            1735..2142
                     /locus_tag="VGN19_02700"
     CDS             1735..2142
                     /locus_tag="VGN19_02700"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HEV7194826.1"
                     /translation="MDELYRENILDHYKHPHNFSPPASELERVDLEFHDLNPLCGDEL
                     TVSLMVDEEHRIEDIRFSGHGCAISQAAASMASDEVKGMRLEDVLALDRSFVLELLGI
                     DISATRLKCALLSLKVLKSASLGSAADWEPVDA"
     gene            2256..2825
                     /locus_tag="VGN19_02705"
     CDS             2256..2825
                     /locus_tag="VGN19_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7194827.1"
                     /translation="MGDLVVTEFISLDGVIEDPGGAEKDRFPNGGWSFKFDRGAEGDQ
                     FKMEELQAAEGQLLGRVTYEGFAAAWPKMASDPFVDKMNSMPKYVVSRSLQQPGWQNS
                     TVLSGELAEEVNAIKERHAGDILVAGSASLVQSLTELGLVDEYRLMMFPVLLGGGKRM
                     FRDDGELRNLKLVEHRPAGDTMILRYRTS"
BASE COUNT          458 a          971 c         1046 g          481 t
ORIGIN      
        1 caacatcccg ttggcgaccg ccaggtgcga tggcaaccac caggcggccg ggtcgccacc
       61 cggctgtcct gagtacagac gccataggga tcggttgacg gcgcgcccat tgaagtcgtc
      121 gcggaagacc atgtgccacc ctggcggatt ggcttgggga atcgggagcc gcgtgcccac
      181 accagatggg gcggcctgag tcacctcggt ggggctcagc ttcgtcggct cgccccatgc
      241 gtacaggccg aagccgatcg ctcccaccat cacgatcgcc agcagccatg gcaacacggt
      301 cggcttggaa gggggccctc catgtattgc gcgagtggac atacgctccg taacgccggc
      361 gcggcgcaat tggttcatcc ggtccggcgt cccccacggt gagtgtatcc agggaggatt
      421 cgctacgagg ctggggcgta ggcgacggcc cagtcaacgt acatgttgac attcgccggg
      481 gtcgtcgagt tggggcactg ctcccaggtg ctggtgccgc acgcccaagc ctgggtctgc
      541 atggccagga ccatcggcac ggacgggacg ttcgcattgg tcgtggtcgc ccagttgcgc
      601 ccgtcgatcg tatagacgag cttccccggg gtccactcca cgcccagggt atgccaccgg
      661 gtcagatcca ccgccagcga gctatcgatg gtcgagttgt tagccccgta gtgcaacgtg
      721 ccgaaatcag tctggcgatt ggcgccgttg tcttcgctga agtcgacctc cggcggccag
      781 ctgccatccg acggccacag caggatcacg tgggcgatcc cgacaccgct gtcgagccgg
      841 aagcgcacca ggtacttgcc gtaggtctgg ctcagccccg ggctggtcga gaccccacct
      901 gtcgtccact tgcccccgtc gctggggtcc ttgtagccgt tcagcgcgag cagcccgttg
      961 ccgacggtca cgtgccgcgg gtcccaccag ccaccagggt cgccgccagg ctgacccgag
     1021 tacctgttcc acttgctcgc atccagcgac gtgccgttga agtcgtccgc gaacacctga
     1081 tgccagccgg ggacgtcgcc cgcgggcatc gaaacgccgg acgggctgga gctgctcggg
     1141 gtcgtcgtgg tcgtcgtgct cgtggtggtg ctcgtggtgg tgctcgtgct ggtgctcgtg
     1201 ctcgttgtag tggtggtcgc tggggcggtc gtcgtggtcg tggtcgtggt cgacgacgtc
     1261 gagccgcccc tgtgacgctt ggtcagcgtg agcagggccg ggcggtgcac tcggcgacgt
     1321 tgagagtgct cacggcggtc gtggccacga acgtggccgg agctccaatg gaacgcggcg
     1381 gcagtcgctg cggcaagggt cccgccggta gcggcgagca cgcctgccag caggctgatg
     1441 gtcagggctc ggccaccggt gcgccgggta gtgcgcttca gggccgagag actgatatgc
     1501 gccgatggct tactcattgc gaacgggtcg gcgggggcaa gcgcaagact tagctattcc
     1561 tcccgcagct ggacaccagc tggacaccgt gtaccccgcg gtcgcgcgac tcaccgccga
     1621 agggcagaaa cgcacgagtt ctcaccggca aacccgcagg ggcctgcgcg tcacgacggt
     1681 ttggggaccg cgcgggcacc ggcgtgcgcg gcgcggtcgc tagccttggg ggcgatggac
     1741 gagctctacc gcgagaacat cctcgaccac tacaagcacc cgcacaactt ctcgcctccg
     1801 gcgtcggagc tcgagcgggt cgatttggag ttccacgacc tcaacccgct gtgcggcgat
     1861 gagctgaccg tatcgctgat ggtcgacgaa gagcaccgga tcgaggacat ccgcttctcc
     1921 gggcacgggt gtgcgatctc gcaggcggcg gcgtcgatgg cctcggacga ggtcaagggg
     1981 atgcggctgg aggacgtgct cgcgctcgac cgctcgttcg tgctcgagct gctcggcatc
     2041 gacatctccg ccacccggct gaagtgcgcg ctgctgtcgc tgaaggtgct caagagcgcg
     2101 tcgctgggca gcgcggccga ctgggagccg gtcgacgcat gagcggtcgg ggctgccgcc
     2161 cggccgcccc ctcccgctcg gccgcccccg cgattagttt cctctccgcg gtcggtcaga
     2221 agggcagacc agaactgact gaagggagca cagcgatggg cgatctggtg gtgactgaat
     2281 tcatctcgtt ggacggcgtg atcgaggatc ccggcggagc ggagaaggac cggttcccca
     2341 acggcggctg gtcgttcaag ttcgaccgcg gcgccgaggg cgaccagttc aagatggagg
     2401 agctacaggc cgccgaggga cagttgctcg ggcgcgtgac ctatgagggc ttcgccgcgg
     2461 cctggccgaa gatggcaagc gacccgttcg tcgacaagat gaactcgatg cccaagtacg
     2521 tcgtgtcccg ctcactgcag cagcccggct ggcagaactc gaccgtcctc agcggcgaac
     2581 tggccgagga ggtcaacgcc atcaaggagc gccacgccgg cgacatcctc gtcgccggta
     2641 gcgcgagcct cgtgcagtcg ctcaccgagc tgggcctcgt cgacgagtac cggctgatga
     2701 tgttcccggt gctgctgggc ggcggcaaga ggatgttccg ggatgacggc gagctgcgga
     2761 acctgaagct ggtcgagcac cggccggcgg gggacacgat gatcctccgt taccgcacgt
     2821 cgtaggcgtt cgcgggcgcg cgggcgggac cccgtgcgcc cccgcacgtg gcccccggtc
     2881 ggagccgcgg tcggcgccct gagcggcgcc ccgcgcggcg tcccgagcgg tgccccgagc
     2941 cgcgccccaa gccgcg
//
LOCUS       DASYFY010000145         5871 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_62284, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000145 DASYFY010000000
VERSION     DASYFY010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5871
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62284"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..1224)
                     /locus_tag="VGN19_02710"
     CDS             complement(196..1224)
                     /locus_tag="VGN19_02710"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEV7194828.1"
                     /translation="MDVYLIDQSGLTSRSVDELPDLLVSGEGIVWVDIPQCRLDEAQL
                     LDRLFGFSEIALHDCVQRNHVSKIQAYDDHVFTVLHAPQIGVHGHVHYIELDQFLGVN
                     YLVTIHGPLNSKVDPAVAFLDTQAVIDRIVAGKFRPRSAFELSSAIISSMTRREIDMI
                     ASLAEQSGQLEQRVMSGEVMKDSEGFLEDLFQVWYELLAIRTIAVHSSATYDRMARLA
                     RFLPAELEPLVADLADRFEMVSTMADGQRESLHGVIEFFQTRVSTHLTIASDELAKTS
                     VVQNDDMRKISAWVAIIAVPTAVTGFMGQNVPYPGFGTPQGFYASSIVMGLMAIVLYT
                     FFRRKKWL"
     gene            complement(1300..2592)
                     /locus_tag="VGN19_02715"
     CDS             complement(1300..2592)
                     /locus_tag="VGN19_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194829.1"
                     /translation="MDDLTRRALLGIGAGVAVGALAECGAGGRLSTAGTVLPKATQTT
                     PPTGSTSTLSRVAQPPTQPPSQTTQPSPRTTASPDGSTAYTGRQPNQPLPQRLLPGQR
                     PPQFVVVSWDGAGETGAQLFSHYREVARRLRGSMTFFVTGLYFLPQSQRNLYHPPQHP
                     VGASDIGFLSDSSVHATIQQVGAAWTDGHEIGTHFNGHFCGPRGVKRWSPQDWDSEID
                     QAIGFVSSWRTTTGFTDLPALPFDYARELVGARTPCLEGQANLLRSSRAKQWRYDSSG
                     TGRQVWPTRFPGSAMWNIPMQSIPFPGHRFQVISMDYNIMYNQSGGPQGAASNRPLWK
                     AQARDAFLAGFDRAYTGNRAPLIIGNHFERWNGGIYMEAVESAITEMAAHPDVRFVSF
                     RQLVDWLEAQDSRVLSKLQALGVGQAPPAQDWAAVTAS"
     gene            2854..3063
                     /locus_tag="VGN19_02720"
     CDS             2854..3063
                     /locus_tag="VGN19_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018771136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194830.1"
                     /translation="MDRAEHELEAVEAVCRRLSARFPDVPPETITRTVHEIHLGLSGP
                     IRDYVPVLVEHMARDHLAARTRQLA"
     gene            3136..>5871
                     /locus_tag="VGN19_02725"
     CDS             3136..>5871
                     /locus_tag="VGN19_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEV7194831.1"
                     /translation="MRAGFAVSLGALGPTASLLRGDRAPLPRTLVDIFRETVLEFGDH
                     PAIDNGASVLTYAELAEAMDELATELNAAGVGVGDRVGIRIRSGTTELYTAILGVLAA
                     GAAYVPADADDPDERARLVFGEAGVAAIIRDDLAVSASTPDGPIGLGSPAPLTEPTPA
                     DDAWIIFTSGSTGLPKGVAVSHRSASAFVDAEARLFLQERPLGVGDRVMAGLSVAFDA
                     SCEEMWLAWRHGACLVPAPRSLVRSGMELGPWLVANEITVVSTVPTLVALWPTAALLA
                     VRLVILGGEACPPEIGARLASPEREVWNTYGPTETTVVACAAPLSGEDPVRIGLPLDG
                     WDLAVVGPDGDHVGPGETGELIIGGVGLARYLDPAKDAEKYAPMPTLGWTRAYRSGDL
                     VRFDPAGLVFRGRADDQVKVGGRRIELGELDSALLALPGVSSAAAAVRRTGSGNVLIV
                     GYVVVTDGFDLDTSMEGLRARLPAPMVPRLAAVEVIPTRTSGKVDRDALAWPLPTLGS
                     PASSTSPALDGTAGWLQELWLEIVGAVVVDPTEDFFDVGGGSLAAAQLVSRLRERFPE
                     VTVADLYERPRLGEMAGGLDEMATPAATVDRNVRPVPRSTQLGQVLFSVPLRALAGLR
                     WITWMAAANNAAYTWLGVHYLPRLSWWVVVAGWVLLLTPPGRILLAAGGARLLLRGIT
                     PGRYPRGGTVQLRVWAAERLADEVGAANLSGAPWMRLYARALGCRLGQHVDLHAIPPV
                     TGMLTLGDECSIEPEVDLNGHWLDGDVLHLGSVSVGRRARVGARSMLCPGAAIGEGAE
                     LAPGSAVFGTVPSGEFWAGAPARLLSSARGPWHDVRPRNRPAWVLGYAAMAGLVAGIP
                     IVGIAAGLTAAWPVLGGASSLRSAAVAAELALPYATVVGLIVVAGLVWTVVRAAGI"
BASE COUNT          832 a         2029 c         2076 g          934 t
ORIGIN      
        1 catcaccctc ggcaagtact acttcgccgt ccagccgatg tggagcaacg aggccaacgc
       61 gggcgcaggc ggatgcgcca tgtctcgtgg caccgggccg gctcccgtgc cgtcctccgt
      121 cccgtaacca ctggtctccc agcgcggata cagcgcggac gcgccggcct cagtggcggc
      181 gcgtccgcgc tggcgtcaga gccacttctt gcgacggaag aacgtgtaca gcacgatcgc
      241 catgaggccc atgacgatgc tggaggcgta gaacccctgg ggggtgccaa aacctgggta
      301 ggggacgttc tgtcccatga accctgtcac cgcggtgggg accgcgatga tggccaccca
      361 cgcggagatc ttgcgcatgt cgtcgttctg gaccacggag gtcttcgcga gctcgtccga
      421 ggcgatggtc aggtgcgtgc tgacccgggt ctggaagaac tcgatgaccc cgtggagtga
      481 ctcgcgctga ccgtccgcca tcgtcgacac catctcgaac cggtccgcga ggtctgccac
      541 gagcggttcg agctccgcgg gcaggaagcg cgcgagcctg gccatccggt catacgtcgc
      601 actgctgtgt accgcgatgg tgcggatggc gagcagctcg taccagacct ggaacaggtc
      661 ctcgaggaaa ccttcggagt ccttcatgac ctcaccggac atgacgcgct gctcgagctg
      721 acccgactgc tcggccaggc tcgcgatcat gtcgatctcc cggcgcgtca tcgaggagat
      781 gatcgcggag gacagctcga acgccgaccg tgggcggaac ttccccgcga cgatgcggtc
      841 gatcaccgct tgggtgtcga ggaaggccac cgcggggtcg accttggagt tgagaggccc
      901 gtggatggtc accaggtagt tgacgccgag gaactggtcg agctcgatgt agtgcacgtg
      961 cccgtgcacc ccgatctggg gcgcgtgcag gactgtgaag acatggtcgt cgtaggcctg
     1021 gatcttggag acgtggttgc gctggacgca gtcatgcagg gcgatctcgc tgaaaccgaa
     1081 gagccggtcg agcagctgcg cctcgtccag ccggcactgc gggatatcca cccagacgat
     1141 gccctcgcca ctgacgagca ggtcgggcag ctcgtccacc gaacgcgacg tcaggcccga
     1201 ctggtcgatc agatacacgt ccatcgcagg cctccttgcg gttcacaggg gcgggtcagg
     1261 tcagcgatga ccgggctggt cagggatgac gagtccagtc taggacgcag tgactgcggc
     1321 ccagtcctgc gccggcggcg cctgccccac gccgagcgcc tggagcttcg acaaaacccg
     1381 ggagtcctgc gcctcgagcc agtccacgag ctgacggaac gagacgaacc gcacgtccgg
     1441 gtgagccgcc atctcggtga tcgccgactc caccgcctcc atgtagatcc cgccgttcca
     1501 ccgctcgaag tggttgccga tgatcagcgg cgcgcggttg cccgtgtacg cccggtcgaa
     1561 gccggccagg aaggcatcgc gcgcctgggc cttccacagt gggcggttgg acgccgcccc
     1621 ctgcgggccg ccggactggt tgtacatgat gttgtagtcc atcgagatga cctggaaccg
     1681 gtgcccggga aagggaatcg actgcatcgg gatgttccac atggcgctgc cggggaaccg
     1741 tgtcggccac acctggcgac cggttcccga cgagtcgtac ctccactgct tggcgcggct
     1801 gctgcgtagg aggttggcct gcccctccag gcagggcgtg cgcgccccga ccagctcccg
     1861 ggcgtagtcg aacggcaggg cgggcaggtc cgtgaaaccg gtggtggtgc gccagctgct
     1921 cacgaagccg atggcctggt cgatctcgct gtcccagtcc tgcggagacc accgcttcac
     1981 cccgcgcgga ccacagaagt ggccgttgaa atgggtgccg atctcgtggc cgtcggtcca
     2041 ggcggcgccg acctgctgga tggtcgcatg gacggacgaa tccgacagga agccgatgtc
     2101 cgacgccccg accggatgct gcggggggtg gtagaggttt cgctgggact gcggcaggaa
     2161 gtacagcccg gtcacgaaga acgtcatcga gccgcgcagg cggcgtgcga cctctcgata
     2221 gtgcgagaag agttgggctc cggtctcccc cgctccgtcc caggagacca cgacgaactg
     2281 gggcggccgc tggcccggga gcaaccgttg cggcaggggc tggttgggct ggcgcccggt
     2341 gtatgccgtg ctgccgtcgg gggacgcggt ggtccgcggc gagggctggg tggtctggct
     2401 tggcggctgg gttggcggct gggcgacgcg cgacagcgtg cttgtcgagc ccgtgggcgg
     2461 cgtggtctgc gttgccttgg gcagcacggt gccggccgtc gacaggcgcc caccggcccc
     2521 acactccgcc agggcgccga ccgccacccc ggccccgatg cccagcagtg cacgccgagt
     2581 caggtcgtcc acgtcaccct ctgtccagcc ccgtctgaag tccagtcccg tctggacggc
     2641 acggcatacc ccattgacgc gccagcgagc tgctcggttg tcccgagcac gtcacgctct
     2701 cgtgcggagc agggtagcgc cctgttccat tgcgagtcct cagccacgcc gcgtgacccg
     2761 cccgcgcggc ctggtcacgg cagtcccact agacagtctc actacgacaa atgaaggctt
     2821 caccggccgg atccatccgc gtacagtctt cgcatggacc gcgccgaaca tgagcttgaa
     2881 gcggtggaag ccgtgtgtcg gcggctctca gcgcggttcc cggacgttcc gccggagacc
     2941 atcacgcgaa ccgtccacga gatccacctc ggactgtcgg ggcccatccg ggactacgtc
     3001 cccgtgctcg tggagcacat ggcccgcgac cacctcgccg ccagaacccg tcagctcgcc
     3061 tgaaggggag ggcccgggag ctcggccagg gtttcgcagg caccatactc ggggcgtgtt
     3121 catcaccctg cacgcgtgcg agccgggttc gctgtgagtc tcggggcgct cgggcctacc
     3181 gccagcctgc tgcgcggcga ccgggcgccg ctgccccgca cgctggtcga catctttcgc
     3241 gagaccgtgc tcgagttcgg cgaccatccg gccatcgaca acggcgccag cgtcctgacc
     3301 tacgccgagc ttgccgaggc gatggacgag ctggctaccg agctgaacgc ggccggcgtg
     3361 ggggtcggtg accgggtcgg catccgcatc cggtcgggca ccaccgagct gtacaccgcc
     3421 atcctcggag ttcttgcggc cggcgccgcc tacgtccccg cggacgcgga cgaccccgac
     3481 gagcgcgccc gtctggtgtt cggcgaggcg ggagttgccg cgatcatccg cgacgacctg
     3541 gccgtcagcg cgtccacgcc ggacggtccg atcgggctcg ggtcgccggc gccgctgacc
     3601 gaaccgaccc cggccgacga cgcgtggatc atcttcacct cgggttcgac cgggctgccc
     3661 aagggtgtcg cggtgtccca ccgcagcgcc tccgccttcg tcgatgcgga ggcacggctg
     3721 ttcctccagg aacggccgct gggggtgggc gaccgggtga tggccgggct gtccgtggcc
     3781 ttcgacgcct cctgcgagga gatgtggctg gcgtggcgcc acggcgcgtg tctcgtacct
     3841 gctccgcgct cgctggtccg cagcgggatg gaactgggcc cgtggctcgt ggcgaacgaa
     3901 atcaccgtcg tgtcaacggt tcccacgctg gtggcactct ggccgaccgc cgctctgctg
     3961 gccgtccgcc tggtgatcct cggtggcgag gcgtgccctc ccgagatcgg cgcccggctc
     4021 gcctcacccg agcgtgaggt ctggaacacg tacggaccga cggagaccac ggtcgtggcc
     4081 tgtgcagcac ccctgtccgg tgaagacccc gtccgcatcg gactccccct ggacggctgg
     4141 gatcttgcgg tggtcggacc ggacggagac cacgtgggtc ctggcgaaac cggagagctg
     4201 atcatcggcg gcgtcgggct cgcccgctac ctcgaccccg ccaaggacgc cgagaagtac
     4261 gcgccgatgc ctaccctcgg gtggacccgg gcctaccgga gcggagacct ggtccgcttc
     4321 gaccctgccg gactcgtctt ccgcggacga gccgacgacc aggtcaaggt cggggggcgc
     4381 cggatcgagc tgggcgagct cgacagtgcg ctgctggcgc tgcccggagt ctccagcgcg
     4441 gccgccgcgg tccgccgcac cggctcgggc aacgtgctca tcgtcggcta cgtcgtcgtc
     4501 accgacgggt tcgacctgga cacctcgatg gagggcctgc gggcccgcct gcccgcaccc
     4561 atggtcccgc ggctcgccgc cgtcgaggtc atccccaccc gtacctctgg caaggtcgac
     4621 cgtgacgcgt tggcgtggcc cctgccaacc ctggggtcgc ctgcgtcgag caccagcccc
     4681 gcgctcgacg ggacggccgg ctggctgcag gagctgtggc tcgagatcgt gggcgccgtc
     4741 gtggtggacc cgaccgagga cttcttcgac gtgggtggcg gcagcctggc cgccgcccag
     4801 ctcgtatcac ggcttcggga acgctttccc gaggtcacgg ttgcggacct gtacgagcgg
     4861 cctcggctgg gtgagatggc cggcggactc gacgagatgg ccactcccgc cgcgacggtc
     4921 gaccggaacg tccgccccgt gcccaggagc acccagctgg gtcaggtgct gttcagcgtg
     4981 ccgctacggg cccttgccgg actgcgctgg atcacctgga tggccgcggc gaacaacgcg
     5041 gcctacacgt ggttgggggt gcactatctg ccacgactgt cctggtgggt cgtggtcgcc
     5101 ggatgggtcc tgttgctcac tcccccgggc cgcatcctgc tcgcagccgg cggcgcgcga
     5161 ctcctcctgc gcgggatcac ccccggccga tacccccgtg gcggcacggt gcagctgaga
     5221 gtctgggccg ccgaacgcct tgccgacgag gtcggtgccg cgaacctcag cggcgcaccc
     5281 tggatgcgcc tgtacgcccg agcgttgggg tgtcggctgg gtcagcacgt ggacctgcat
     5341 gcgatcccgc ccgtgaccgg catgctgacg ctgggcgacg aatgctcgat cgagcccgag
     5401 gtggacctca acggtcactg gctcgacggg gacgtgctcc atctcggcag cgtgtcggtg
     5461 gggcgccgcg cccgcgtggg ggcgcgcagc atgctgtgcc cgggggccgc catcggcgag
     5521 ggcgcggagc tcgcgccagg gtctgcggtg ttcggcaccg ttccgtcagg agagttctgg
     5581 gccggggctc ccgcccgcct gctcagctct gcccggggtc cgtggcacga cgttcgcccg
     5641 cgcaaccgcc ccgcgtgggt cctggggtat gccgcgatgg cgggactggt ggcggggatc
     5701 cccatcgtcg gcatcgccgc cgggctcacc gcggcctggc cggtgctcgg cggtgcctcg
     5761 tccctgcgaa gcgctgcggt cgccgccgag ctcgccttgc cctacgcgac ggtcgtcggt
     5821 ctgatcgtgg tggcaggcct ggtctggacg gtggttcgcg ccgccgggat c
//
LOCUS       DASYFY010000146         1839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1324770, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000146 DASYFY010000000
VERSION     DASYFY010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1324770"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..120
                     /locus_tag="VGN19_02730"
     CDS             <1..120
                     /locus_tag="VGN19_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013838765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEV7194832.1"
                     /translation="TVNDAVAMHHLLDLGVDGIITDRSDTLREVLTERAARPA"
     gene            128..1516
                     /locus_tag="VGN19_02735"
     CDS             128..1516
                     /locus_tag="VGN19_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194833.1"
                     /translation="MSDSSAAAGPTGIDQRERVREQRAWYFYDWANSAYVTTTLTVLF
                     SPYLITVAEKAACPGLADASHCTTNLSLLGIPVSPGSLPGYVVTATTLLSAAVLPVVG
                     ALADRSPRQKSVLAWFAWVGALAATAMFFVAGSDWQLGVLLLFVANLCLGSSLVVYDA
                     ILCQIATPDERDHVSSRGWALGYLGGFVLLAINLVLVLGHGSFGLSKGGAVRVSLASA
                     GLWWGVFTFIPYLGLRNRPPVNLAPTSGSLVQASFGQLANTFRHMRGYRNTLLFLLAY
                     LFFNDGIQTVIVSSSTYGSKELGFSDSQLIMTILVVQVVAFAGALLFGRLAARFGSHR
                     VVLDSLVVWTLVVVLAFFIPDGAFLLFVALAVLIGIVLGGTQALSRSLFSQLIPRGRE
                     AEYFSLYQACERGTSWLGTLVFGLVHQVTGSYRWAIIALVVFFVVGGVLLSRVRMREG
                     ILAAGNTLPAVV"
     gene            1661..>1839
                     /locus_tag="VGN19_02740"
     CDS             1661..>1839
                     /locus_tag="VGN19_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001000 - bacterial-type RNA polymerase
                     core enzyme binding [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein RbpA"
                     /protein_id="HEV7194834.1"
                     /translation="MAERSLRGTNLSALSMETDANVVLSERQLVRYVCPEQHISELPF
                     SVEADVPPVWECRCGL"
BASE COUNT          234 a          654 c          614 g          337 t
ORIGIN      
        1 acggtcaacg acgcagttgc gatgcatcac ctgctcgacc tgggcgtcga cggcatcatc
       61 accgaccgct cggacacgtt gcgcgaagtg ctgaccgagc gggccgcgcg accggcatga
      121 tgcgaccgtg agcgactcca gcgcggccgc cggacccacc ggaatcgacc agcgcgagcg
      181 cgtccgcgag caacgggcct ggtacttcta cgactgggcc aactcggcct acgtcaccac
      241 cacgctcacc gtgctgttct cgccgtacct gatcaccgtc gcggagaagg cggcatgccc
      301 cggcctcgcg gacgccagcc actgcaccac gaacctctcc ctgctcggca tcccggtcag
      361 cccggggtcg ctgcccggct acgtcgtgac ggcgacgacc ctgctgtcgg ccgcggtgct
      421 gccggttgtg ggcgccctgg ccgaccgctc gccccggcag aagtccgtgc tcgcgtggtt
      481 cgcgtgggtc ggggcgctcg ccgccaccgc gatgttcttc gtcgccggca gcgactggca
      541 gctcggggtg ctgctgctgt tcgtcgcgaa cctgtgcctc gggtcctccc tcgtcgtcta
      601 cgacgccatc ctctgccaga tcgcgacgcc cgacgagcgc gaccacgtgt ccagccgggg
      661 ctgggcactc ggctacctcg gtggcttcgt cctgctggcc atcaacctcg tgctggtgct
      721 gggccatggg tcgttcgggc tgtccaaggg cggggcggtc cgggtcagcc tggcgtcggc
      781 aggactgtgg tggggcgtct tcacgttcat cccctacctg ggcctgcgca accggccgcc
      841 ggtcaacctc gcaccgacgt ccggctccct ggtgcaggcg tccttcggtc agctcgccaa
      901 cacctttcgg cacatgcggg gctaccggaa cacgctgctc ttcctgttgg cgtacctgtt
      961 cttcaacgac ggcatccaga ccgtcatcgt gtcgtccagc acgtacgggt ccaaggagct
     1021 ggggttcagc gacagccagc tgatcatgac catcctcgtc gtgcaggtcg tggccttcgc
     1081 cggtgcgctg ctgttcgggc ggctggccgc ccgcttcggc tcgcaccggg tcgtgctcga
     1141 cagcctggtc gtgtggacgc tcgtggtggt gctggcgttc ttcatcccgg atggcgcgtt
     1201 cctgctgttc gtcgccttgg cggtgctgat cgggatcgtg ctcggcggca cgcaggcctt
     1261 gtcccgctcg ctcttcagcc agctgatccc gcgcgggcgc gaggccgagt acttcagcct
     1321 gtaccaggcg tgcgaacgag ggacgagctg gctcggcacc ctggtcttcg gcctcgtgca
     1381 ccaggtcacc ggctcctacc ggtgggccat catcgcgctg gtcgtcttct tcgtcgtcgg
     1441 cggcgtgctg ctgtcgcggg tgcgcatgcg tgagggcatc ctggccgccg gcaacaccct
     1501 ccccgcggtc gtctgagcgg gcgggcggcc ggctccggca ccgacagtgt gatccgtcag
     1561 acatcggggt aatgcggaac atcggggccc aacccgtcgt tggaccccct gagacccccg
     1621 cgtacatctt gtcgtgggcc gcacgttggg agggcccatc atggccgaac gatcacttcg
     1681 agggacgaac ctgagcgccc tcagcatgga gaccgacgcg aacgtcgtgc tcagcgagcg
     1741 tcagctcgtg cgttacgtct gccccgagca gcacatcagc gagctcccct tctcggtgga
     1801 ggccgacgtc ccgccggtgt gggagtgccg ctgcggact
//
LOCUS       DASYFY010000147         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_851614, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000147 DASYFY010000000
VERSION     DASYFY010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_851614"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1448..1699
                     /locus_tag="VGN19_02745"
     CDS             1448..1699
                     /locus_tag="VGN19_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012880209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194835.1"
                     /translation="MTDVPRRAARQPRSLTPEQITDSSVTKAGEPLRVTAWIIWEDGV
                     EERIVGHAIAWTARAVQVRFGVPPHQHETWVWAGAVTRT"
     gene            complement(1868..>2204)
                     /locus_tag="VGN19_02750"
     CDS             complement(1868..>2204)
                     /locus_tag="VGN19_02750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194836.1"
                     /translation="AMSTSTADLLFGRFAATATAVAEARPQVDPAMIREIFDDAATML
                     HNGLALDHLDDHDAQIVVSQLCVALTDPDPTTALMTRFYAASEEPDDLHDPIGVALAY
                     ENVLGILQL"
BASE COUNT          388 a          757 c          730 g          329 t
ORIGIN      
        1 gaagggggcg atcccggtct tggctgcgac ccggccgagc acgtgggctc ggtgcacgtc
       61 gtaggcggcg aagtgggcca gggtgccacc gcgcacgtac tcgaactcca ccgccgggtc
      121 cgcccgggcc atgggggtag gccacgatga cggcgccgca gcgcctgcag ctgggacttc
      181 tcgtcggcgc tgatcacata ctcgtcatcg cacagctcac ggcctcgcca gtgccggtcg
      241 tacaggtcga gcacccgggc ggccttgtcc tgaaagtgcg ggtcgcgggg aaagatccag
      301 gaccggtgct gccacggctt catcgcgtcc gcagccagcc agcggcgcac cgtcgaggcc
      361 gagatcacct cgaccagtcc acgagccgtg acctcggccg ccaggtccgt gctggaccac
      421 cgcgacagcg gaacgtcgag gcggccggcg ggctgcaggt gctgtgaccg caccagaaag
      481 gggtcgtggc tgtggaccgc gccgcgagtc ctccgaggcg aatggacgcg gtcgctcaga
      541 tcggacggcc gcaggtccgc gtcgcacatc tcctcggcca ttcaactaac gcgcgtcact
      601 ggacggagga caacaggtct tgacgcaggt cttgacagca ggtcttgatg catttgcgtg
      661 aggagtttcc gtactggctc aaggcgcgcc tccggcgcgc ggccgggcct gcgggcggcg
      721 ctggcgcgcc gtcctcggcc tccggcctga catggagaag gggcgcctcc gtctcgatga
      781 cgggacgccc ctcacgcggc aaaccggttc tcacttccga tgctgcaacc accggcccgt
      841 aaggcccgcg acagcgaagc aacccaagat gacgaagaga aacgcgggca actccatacc
      901 tgcacagtag agccacagag accagttcgc ataccctgat gaggagggga cgagttctgg
      961 gtcggttgcc ctaaggattc ctcctgacgc cagcctcggt ccaggtgcta cgacccgctg
     1021 aagggcttcc gcatcggcat ggcagccggc caccgtcagc tcgacccaag tctccgtcac
     1081 tgcgccaacg ctgccgccgc tggtgacctg ccagccgcga aaccgctccg ctccaccccc
     1141 tccattcgac ttcacagcca cgtcccgcgc tcgagctcta ccctcgcctg gcatgaccga
     1201 ccagcccagc gagcctgcct ggctgcagcc gtcgtgggga gcggccctcc aacgaccccg
     1261 aaccccgttc gtccagatcc ggtggcacga ctccaacacc tggtccgcga acgcgacgca
     1321 gcgtggcagg cggccagcaa cgagaccaag tcgcagatcg agccgacccg atccgaagat
     1381 cgccgctcgt cctgttaagg ctccgacttc tcccgaggta gaacacgtgt tcgatacact
     1441 cacggaggtg accgatgttc ctcgacgagc tgcacggcag ccccggtcgc tgaccccgga
     1501 acagatcacg gactcgagcg tgacgaaagc cggcgagccg ctccgcgtga cggcatggat
     1561 catctgggaa gacggtgtcg aggaacgcat cgtcggccac gcgattgcct ggaccgcgcg
     1621 tgccgtccag gtccgcttcg gcgtgccgcc ccaccagcac gagacctggg tgtgggccgg
     1681 cgctgtcacc cgtacttgac ggccttgacg tcgtacagca gcaaagtaca gccgcaaagc
     1741 cagcaacgcc cgcggtagcg gtccgaatct cgttgtgcgc caagcacaat cgagcgccgc
     1801 cacaagggtc gcggcaagtt cgggacgaag aggccgcagg ttcaaatcct gtcaccccga
     1861 ctcagcgtca cagctggagg attcccagga cgttctcgta ggccagggcc accccgatgg
     1921 ggtcgtgcag gtcgtcgggc tcctcggagg cggcatagaa ccgggtcatg agggcagtcg
     1981 tcgggtccgg atcggtgagg gccacacaca gctgcgagac gacgatctgg gcgtcgtggt
     2041 cgtccaggtg gtccagcgcg agtccgttgt gcagcatcgt cgcggcgtcg tcgaagatct
     2101 cccggatcat cgcgggatcc acctgtggac gcgcctccgc tacggcggtg gcggtggcgg
     2161 cgaaccgccc gaagagcagg tcggcggtgc tggtggacat ggcg
//
LOCUS       DASYFY010000148         1540 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1062125, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000148 DASYFY010000000
VERSION     DASYFY010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1062125"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1000)
                     /locus_tag="VGN19_02755"
     CDS             complement(<1..1000)
                     /locus_tag="VGN19_02755"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7194837.1"
                     /translation="MRVLVNALPVRGTSLGVVTENLLQGWDESDDIHLALRPGVALEV
                     PGRVTVHPVGGPRLLAMEREVPALCRRLGTDAVLGVTPATTIGPLPCPRVIIVHDVRH
                     EMRPHQFPYRVRVLRSVSYGLAYRRADAIVTVSHRTREDLLRFHPWLRKRTVVVAQNG
                     ADHVLSWPRPESGGDGYALAFGQWGNKNVGLVLEAWARLHRESDDTLPLVIVGLPDED
                     RVRVQADVSSHGLTDLVTLKPWLDPDEFRQQFTGASLVVFPSDFEGFGLPALEAMRLG
                     IRVIITPDPALFEVTGGLATVMDGWDAAALVRAVPVARAQSAEAVERAMEHASAFTW"
     gene            1191..>1540
                     /locus_tag="VGN19_02760"
     CDS             1191..>1540
                     /locus_tag="VGN19_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194838.1"
                     /translation="MSARSSRIVVHDYSGHPGQAQLSRALARRGYDVTHQHCPSYTTG
                     RGSLQHEAGDPATLVFEPVEMDGTFAKYSARTRLRQEWRYGRTAADAIAAKDPAVAVI
                     SNVPLLAHSVLARRL"
BASE COUNT          235 a          563 c          528 g          214 t
ORIGIN      
        1 tccacgtgaa cgcggatgcg tgctccatcg cccgctcgac ggcctcggca ctctgcgcgc
       61 gcgccaccgg caccgcccgg accagcgccg ccgcgtccca gccgtccatg accgtggcca
      121 gccctcctgt cacctcgaag agtgcggggt ccggagtgat gatcacgcgg atcccgaggc
      181 gcatcgcttc gagcgccggc aggccgaatc cctcgaagtc ggaggggaag acgaccagcg
      241 acgcccccgt gaactgttgg cggaactcgt cggggtcgag ccacggcttc agggtgacca
      301 ggtcggtcag gccgtgggac gacacgtccg cctgcaccct cacccggtcc tcatcgggca
      361 ggcccacgat cacgagcggc agtgtgtcat cgctctcgcg gtgcagacgc gcccacgctt
      421 cgagcacgag ccccacgttc ttgttgcccc actgcccgaa ggcgagcgcg tacccgtccc
      481 ctccggactc gggacggggc cacgacagca cgtgatcggc accgttctgg gcgacgacga
      541 ccgtccgctt tcgcaaccag ggatggaagc ggagcaggtc ctctcttgtg cgatgtgaga
      601 ccgtgacgat ggcatcggcg cgtcggtagg cgaggccgta gctcacgctg cggagcacac
      661 gcacgcggta ggggaactgg tgcggccgca tctcgtggcg cacgtcgtgc acgatgatca
      721 cccgggggca ggggagcggc ccgatggtgg tggccggcgt cacacccagc acggcgtcgg
      781 tcccgaggcg ccggcacaac gccgggacct cccgctccat ggcgaggagg cgcggccctc
      841 ccacggggtg cacggtcacg cgacccggga cctccagcgc gacgccgggg cgaagagcca
      901 ggtggatgtc gtccgactcg tcccagccct ggagcaggtt ctccgtgacc acgccgaggc
      961 tcgtgccccg gacgggcaag gcgttgacca ggactcgcac ggccgcacgg tagccgcccc
     1021 cggaaacagg tctgtcccgt caggcccagg accaggcgcg atgccggtcc ggtccacctc
     1081 ggggccgcgc tccgagagga ggaaatttcg cagccggact gcaagttccc cccacctggc
     1141 ccgttctctc gcggagggtc tttaccaagg gacacagggg gttccaggcg ttgtctgccc
     1201 gctcgtcgcg gatcgtcgtt catgactact ccggccatcc gggccaggcg cagctcagcc
     1261 gcgccctggc gcgccgcggc tacgacgtga cccaccagca ctgcccctcg tacacgaccg
     1321 gccgcggctc cttgcagcac gaggccggcg acccggccac gctggtcttc gaaccggtgg
     1381 agatggacgg caccttcgcc aagtactccg cccgcacccg tctgcgccag gagtggcgct
     1441 acggccgcac ggcggcggat gccatcgcgg cgaaggaccc ggcggtcgcg gtgatcagca
     1501 acgtgcccct gttagcgcac tcggtgctgg cgcgtcggct
//
LOCUS       DASYFY010000149         4463 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_10819, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000149 DASYFY010000000
VERSION     DASYFY010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10819"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..861
                     /locus_tag="VGN19_02765"
     CDS             <1..861
                     /locus_tag="VGN19_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018770582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7194839.1"
                     /translation="PGRVAVTGSSGKLGRAVVAHLVVHGWQVLSLDRTRPPDVVTPFV
                     SVDLTDYGQVAEVLGGGVDEHLGPLDAVVHLAAVPAPGLVTNAATFANNSQATYHVFA
                     AARAVGIRQVVWASSETVLGLPFDTPPPYVPVDEEYPPRPESTYSLNKVLEEEMARHF
                     CRWEPEASMTGLRFSNVMDVADYAEFPSFDADVLLRKWNLWGYIDARDGAQAVRKALE
                     RRLPGLEVFVIANADTVMSRSSADLVAEVFPGVEVRHELGEHETLLSIDKARRLLGYE
                     PEHCWRDEVR"
     gene            918..2114
                     /locus_tag="VGN19_02770"
     CDS             918..2114
                     /locus_tag="VGN19_02770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7194840.1"
                     /translation="MPAPHLETSVVTLQRVERSAGDLSSAAIRRMDASHEWYRALSAE
                     DRSWVGLVAQAGIAAFITWLREGGDQIPVTADVFGTAPRELTRSITLRQTLDLVRSVV
                     DVVELDATALAEPGEEQALRESVLRYSREIAFAAAEVYAHAAEARGAWDARLEGLVVD
                     AVLRGEADDSMQSRAAALGWGTTTRVAALVGSTPPGSPAGVVDGLRRAAQRVGVDTLA
                     AIQGRRLVCILGKVDDPVLAARAVQDHFGDGPLVVGPLVPHLFAAGRSARAALAGQSC
                     AHAWPGAPRPVAADDLLAERVLVGDAPARALLLDRIWHPLLGAGGSLLETASVYLETS
                     GGLEGTARILFVHPNTVRYRLGKVADLTGYQLTDQHDAHTVRIALALGRLSRPPGPVT
                     RPAPPR"
     gene            2222..3205
                     /locus_tag="VGN19_02775"
     CDS             2222..3205
                     /locus_tag="VGN19_02775"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEV7194841.1"
                     /translation="MLAIVCPGQGSQTPGFLAPWLELPAFRERLEALSEVAGMDLVAH
                     GTTSDADTIKDTAVAQPLIVAAGLATAAVLFPQDPAGRQGQADRRSSNGTVGVTAGHS
                     VGEITAAAFAGVLDDRDAMVFVRERGAGMAAASAVTPTGMSAVLGGDPGEVAQTLERH
                     GLTPANANGAGQVVAAGTLEQLAALAADPPTKARVIPLQVAGAFHTTHMSPAVQALGQ
                     LSVSFEVSDPGITLLSNADGAVVTEGSEVLARLVRQVSSPVRWDQCMQAMLDLGVTGL
                     LELAPAGTLVGLAKRGMPGVSTLAVKTPDDLDAATELIASHSPDPTDVQEA"
     gene            3207..4229
                     /locus_tag="VGN19_02780"
     CDS             3207..4229
                     /locus_tag="VGN19_02780"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEV7194842.1"
                     /translation="MTTPTPKGTGTITTATGAQYARILGVGGYRPERVVPNSEIVGAI
                     DSSDEWIQERSGIKSRRFAAKDESVVDMSEAATRDALRAAGLEAAQVDAVIVATVTHP
                     YQTPAAAPILADRLGIQGAAFDISAACAGYCHAISLASDMVRGGSAQHVLVVGVEKLS
                     DFTDPTDRGSAFIFGDGAGAAIVGPSATPAIGPTVWGSDGSQWRTISQRDSWVELKES
                     GGIGSPAIGMAGQAVFRWAVWGMAPVAQKALDAAGVRAEDLDAFIPHQANMRIIDAMI
                     KQLKLPSDIPVARDIAETANTSAASIPLATERMLREGEAPHGGLALQIGFGAGLVYAA
                     QVVVLP"
     gene            4312..>4463
                     /locus_tag="VGN19_02785"
     CDS             4312..>4463
                     /locus_tag="VGN19_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010551652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HEV7194843.1"
                     /translation="MAQSEQEILEGLAEIVNEETGLDTDSVQTEKSFTDDLDIDSLSM
                     MTIVVNA"
BASE COUNT          645 a         1604 c         1541 g          673 t
ORIGIN      
        1 ccgggccgcg ttgccgtcac cggctcgtcc ggcaagctcg gccgagccgt cgtggcccac
       61 ctcgtggtcc acggctggca ggtgctgtcg ctggaccgca cccggccgcc ggacgtcgtc
      121 acgccgttcg tctcggtcga cctgactgac tacggccagg tcgccgaggt cctcggcggc
      181 ggggtggacg agcacctggg accgctggat gccgtggtcc atctggccgc ggtccccgcc
      241 ccaggactgg tgaccaacgc ggcgaccttc gccaacaact cgcaggcgac gtaccacgtg
      301 ttcgcggccg cgcgagcggt cggcatacgg caggtcgtgt gggcctcgag cgagacggtc
      361 ctcgggctgc cgttcgacac tcccccgccc tacgtgcctg tcgacgagga gtacccgccg
      421 cgaccagagt cgacctactc cctgaacaag gtcctcgagg aggagatggc ccgccacttc
      481 tgccgctggg aacccgaggc gtccatgacg ggcctgcggt tctccaacgt gatggacgtg
      541 gccgactacg ccgagttccc ctcgttcgac gccgacgtcc tgctgcgcaa gtggaacctc
      601 tggggctaca tcgacgcccg cgacggagct caggccgttc ggaaggctct cgagcgccga
      661 cttcccggcc tggaggtctt cgtgatcgcc aatgcggaca cggtcatgag ccggtcgagc
      721 gccgatctcg tggccgaggt tttccccggc gtcgaggtcc gccatgagct cggcgagcat
      781 gagacgttgc tgtcgatcga caaggcaagg cgcctgctgg ggtacgagcc cgagcactgc
      841 tggcgcgacg aggtgcgctg agcctcggcg acggctcgcg ccgaccattg tggacggcat
      901 acaaatagac tttcggtatg ccggccccgc acctcgagac ctccgtggtc acgttgcagc
      961 gcgtggagcg ctcggcgggt gacctgtcga gcgcggccat tcgccgcatg gacgccagcc
     1021 acgagtggta tcgcgccctg tcggccgagg accgctcctg ggttggactg gtcgcccagg
     1081 ccggcatcgc cgccttcatc acctggcttc gcgagggcgg cgaccagatc cccgtcacgg
     1141 ccgacgtgtt cggcaccgca cctcgtgagc tgacccggtc catcaccctg cgccagaccc
     1201 tcgacctggt gcggtcggtc gtcgacgtcg tcgagctgga cgcgacggcc ctcgccgagc
     1261 cgggcgagga gcaggctctg cgcgagtccg tccttcggta ctcgcgagag atcgccttcg
     1321 ccgcggcgga ggtgtacgcc catgcggccg aggcgcgcgg agcgtgggac gcccgtctcg
     1381 aggggcttgt cgtggatgcc gtgctgcgtg gcgaggcgga cgactccatg cagtcgcggg
     1441 cggcggccct gggctggggt accaccaccc gggttgcggc gctcgtcggg agcacgccgc
     1501 cgggcagccc ggccggagtc gtggacggcc tgcgccgtgc ggcacaacgc gtaggcgtcg
     1561 acacgctcgc cgccatccag ggtcgccgcc tggtctgcat cctgggcaag gtcgacgatc
     1621 cggtcctcgc ggcccgggcg gtgcaggacc atttcggcga cggtccgctg gtggtcggac
     1681 ccttagttcc ccatctgttc gccgctggcc gctcggcacg ggcggccctc gccgggcagt
     1741 cctgcgcgca cgcgtggccg ggggcaccgc gtcccgtagc ggccgacgac ctgctcgcgg
     1801 agcgggtcct cgtcggtgat gcacccgccc gggcgctgct gctggaccgg atctggcatc
     1861 cgctgctcgg cgctggcggc tccctgttgg agacggcttc ggtctatctg gagaccagcg
     1921 gaggcctcga ggggaccgcc cggatccttt tcgtccaccc caacaccgtg cggtaccgcc
     1981 tgggcaaggt cgccgacctc acgggctacc agctcacgga ccagcacgac gctcacacgg
     2041 tgcggattgc gctggcattg ggtcggctta gtcggccgcc ggggcccgtg acgcgcccag
     2101 ctccccctcg ctgaccatcg agggcattcg tggccctttg gaggattcct ccaaaactgg
     2161 cccgcgatgt tggtgccaat cggtcacggt gaggttacgg tctgcccgca aggctgggac
     2221 cgtgctcgca atcgtctgcc ccggacaggg ctcccagacc cccggcttcc tggcgccctg
     2281 gctggagctc ccagcctttc gcgagcgact cgaggcactg tccgaggttg ccgggatgga
     2341 tctcgtcgcc cacggcacga cctccgatgc ggacaccatc aaggacaccg ccgtggccca
     2401 gccgctcatc gttgccgcgg ggctggcgac cgcggcggtc ctgttcccgc aggaccccgc
     2461 aggtcggcag ggtcaggcgg accggcgcag ttcgaacggc acggtgggcg tgacagctgg
     2521 tcactcggtc ggtgagatca ccgctgcggc gttcgccggg gtgctcgatg accgggatgc
     2581 catggtgttc gtccgcgagc gtggcgcggg catggccgca gccagcgcgg tgaccccgac
     2641 cggaatgagc gccgtcctcg gcggcgaccc gggtgaggtg gcgcagacgc tcgagcgcca
     2701 cggcctcacc cccgccaacg ccaacggcgc cggccaggtg gtcgccgccg ggacgctcga
     2761 gcagctggcc gccctggccg cggatccgcc gaccaaggct cgagtcatcc cgcttcaggt
     2821 cgcaggagcc ttccacacga cccacatgtc cccggccgtc caggcgctcg gtcagctgag
     2881 cgtcagcttc gaggtgtcgg accctggcat cacgctgctg tccaacgcgg acggtgccgt
     2941 cgtcactgag ggctccgaag tgctcgcccg gcttgtgcgg caggtgagca gcccggtccg
     3001 gtgggaccag tgcatgcagg ccatgctcga cctcggcgtc accgggctcc tcgagctcgc
     3061 ccctgccggc acgctcgtcg gtctcgccaa gcgaggaatg ccaggagtga gcacactggc
     3121 cgtgaagacg ccggacgacc tcgatgcggc cacagagctc atcgcgtccc actcccccga
     3181 cccgaccgac gtgcaagagg cctgacatga caacaccgac ccccaagggc accggcacga
     3241 tcaccaccgc cacgggcgct cagtacgccc gcatcctcgg ggtcggcggc taccgccccg
     3301 agcgggtggt ccccaactca gagatcgtcg gggcgatcga ctcctccgac gaatggatcc
     3361 aggagcggtc tggcatcaag agccggcggt tcgcggccaa ggacgagtcc gtcgtcgaca
     3421 tgtcggaggc agcgacccgc gacgcgctcc gggccgccgg cctcgaggcg gcacaggtcg
     3481 atgcggtcat cgtcgcgacc gtgacccacc cgtaccaaac tcccgcggcg gcaccgattc
     3541 tcgccgatcg gctgggaatc cagggtgccg cgttcgacat ctccgctgcg tgcgccgggt
     3601 actgccatgc catcagcctc gccagcgaca tggtgcgggg cggctccgcg cagcacgtcc
     3661 tggtggtcgg cgtcgagaag ctctcggact tcacggaccc cacggaccgg gggtcggcct
     3721 tcatcttcgg cgacggcgcc ggggcagcca tcgtcgggcc tagcgccacc cccgccatcg
     3781 gacccacggt gtgggggtcg gacggctccc agtggcggac catctcccag cgcgacagct
     3841 gggtcgagct caaggagtcc ggcggcatcg gttcgccggc catcgggatg gcaggccagg
     3901 ccgtcttccg ctgggcggtg tggggcatgg ccccggtcgc ccagaaggcc ctcgacgctg
     3961 ccggcgtgcg cgccgaggac ctcgacgcct tcatccccca ccaggccaac atgcgcatca
     4021 tcgacgcgat gatcaagcag ctcaagctgc cctcggacat tccggtggct cgcgacatcg
     4081 cggagacggc caacacctcg gccgcgtcga tccccctggc caccgagcgg atgctgcgcg
     4141 agggcgaggc cccccatggc gggctggcgc tgcagatcgg cttcggcgcc gggctggtct
     4201 acgcggccca ggtcgtcgtg ctgccctgac tgactcccgc tggcccgcgg gtgaaccggg
     4261 ccgaccaacc gattcacaca agcacaccaa cggataaagg agctgagcca catggcgcag
     4321 agcgagcagg agatccttga gggtctggcc gagatcgtca acgaggagac cggactggac
     4381 accgactcgg tgcagaccga gaagtccttc accgacgacc tcgacatcga ctcgctgtcg
     4441 atgatgacca tcgtggtcaa cgc
//
LOCUS       DASYFY010000150         4075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1325137, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000150 DASYFY010000000
VERSION     DASYFY010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1325137"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..2048
                     /gene="dnaK"
                     /locus_tag="VGN19_02790"
     CDS             156..2048
                     /gene="dnaK"
                     /locus_tag="VGN19_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEV7194844.1"
                     /translation="MARAVGIDLGTTNSAVAVLEGGEPTIIANAEGGRTTPSVVAFSK
                     GGEVLVGEIAKRQAVTNVDRTIRSVKRHIGKDWKSPDIDGKNYTAQEISARILQKLKR
                     DAEAYLGEDVTDAVITVPAYFDDHERQATKEAGEIAGLNVLRIINEPTAAALAYGLDK
                     GKEDELILVFDLGGGTFDVSLLEVGKDPEDGFSTIQVRATSGDNQLGGDDWDERIVNH
                     LLTTVKNTSGVDLAKDKIAMQRLRDAAEQAKKELSSSTSTNVSLQYLSMSENGPIHLE
                     ETISRAQFEQLTKDLLDRTKQPFHNVIKDAGISLSDIDHVVLVGGSTRMPAVSSLVKE
                     LTGGKEPNKGVNPDEVVAVGAALQAGVLKGERKDVLLIDVTPLSLGIETKGGLFTKLI
                     ERNTAIPTKRSEVFSTAEDNQPSVLIQVFQGEREIAQHNKQLGTFELTGIAPAPRGVP
                     QIEVTFDIDANGIVNVSAKDRGTGVEQKITISGGSALPKEDIERMVREAEEHAAEDHK
                     RREETEARNSAEQLVYSTEKFLADNTDKIPADSRGDVDAALEDLKSALKPESGVSPDD
                     LAKKSAKLSEESQKVGAAMYAAASESEKAGAGDGAASGADASAGGAAHDDVVDAEVVE
                     DDEGKK"
     gene            2045..2680
                     /gene="grpE"
                     /locus_tag="VGN19_02795"
     CDS             2045..2680
                     /gene="grpE"
                     /locus_tag="VGN19_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEV7194845.1"
                     /translation="MTEHYAAGQNPTASDPEVVVGEEASEPTPAAAGTESGVTDPDVI
                     ELEALEAEVADQQDADVVTTSDDAALAAERLADLQRLQAEYVNYKRRVDRDRALVQER
                     AAQSVIEALLPVLDDIHAAREHGDLTDGPFAAIADKLEGVLGKFGLERYGAVGEDFDP
                     MVHEALMHTSWPQDGSVISTGSTAVVQVLQPGYRAGEQVLRAARVAVADPE"
     gene            2725..3732
                     /locus_tag="VGN19_02800"
     CDS             2725..3732
                     /locus_tag="VGN19_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013115691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HEV7194846.1"
                     /translation="MASQDWFEKDFYAILGVPKDADAAAIKKAYRKLARTYHPDQNPG
                     DASAEQRFKEIGEAHSVLADPEQRREYDAVRQMARGGARFTAGGPGGGNGGFDDVFSS
                     MFGGGGGGAGSRVRYSTGGAGQPDLEDILGGMFGSGGGSAYGGFGAPRGPRKGADVEA
                     RTTLSFRDAVTGATVTLSAADGSQVTTRIPAGVKDGQKIRLRGKGQPGDAGAPPGDLM
                     LTVAVQKHPVFGREGDNLTVELPVTFAEAALGATVSVPTLDDKPVKVRIAPGTPSGRV
                     LRVKGRGVHKPDKAGDLLVKVTVVVPQRLSDEAKAAVEALRDHEAGYDPRAELFAEAR
                     Q"
     gene            3825..4075
                     /locus_tag="VGN19_02805"
                     /pseudo
     CDS             3825..4075
                     /locus_tag="VGN19_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142377.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
BASE COUNT          738 a         1352 c         1411 g          574 t
ORIGIN      
        1 agtccgcagc ctgtcgggac gtcgggaaca atccgtcatc gcgcaaagtt gagcccagtg
       61 aacgcaagtt tggacgtatg gatttgccac gtcggcatac ctgctcctaa cttgagtgca
      121 ggaaactcaa ccccgagcac cacaggagac tcaccatggc acgtgcggtc ggcatcgacc
      181 tcggtacaac caactcggca gtcgcggtcc tcgaaggcgg cgagccgacg atcatcgcga
      241 acgcggaggg cggtcgcacg accccgtccg ttgtcgcctt ctccaaggga ggcgaggtcc
      301 tggtcggcga gatcgccaag cgccaggccg tcaccaacgt cgaccggacc atccgctccg
      361 tcaagcgcca catcggcaag gactggaagt ccccggacat cgacggcaag aactacaccg
      421 cgcaggagat cagcgcccgc atcctgcaga agctgaagcg cgacgcggag gcctacctcg
      481 gcgaggacgt caccgacgcg gtgatcaccg tgcccgcgta cttcgacgac cacgagcgtc
      541 aggccaccaa agaggccggc gagatcgcag gcctgaacgt cctgcgcatc atcaacgagc
      601 ccaccgcagc ggccctggcc tacggcctcg acaagggcaa ggaggacgag ctcatcctcg
      661 tcttcgacct cggtggcggc acgttcgacg tgtccctgct cgaggtgggc aaggaccccg
      721 aggacgggtt ctccaccatc caggtgcgcg ccacctccgg tgacaaccag ctcggtggtg
      781 acgactggga cgagcggatc gtcaaccacc tgctcaccac cgtcaagaac acctctggcg
      841 tcgacctggc caaggacaag atcgccatgc agcggctgcg tgacgccgcg gagcaggcca
      901 agaaggagct gtccagctcg acgtcgacca acgtctcgct gcagtacctg tcgatgtccg
      961 agaacgggcc gatccacctc gaggagacga tcagccgcgc gcagttcgag cagctgacca
     1021 aggacctgct cgaccggacc aagcagccgt tccacaacgt catcaaggac gccggcatct
     1081 cgctgtccga catcgaccac gtggtgctcg tcggtggctc gacccgcatg cctgccgtga
     1141 gcagcctcgt caaggagctc accggtggca aggagcccaa caagggcgtc aaccccgacg
     1201 aggtcgttgc ggtcggcgcg gctctgcagg ccggggtcct caagggcgag cgcaaggacg
     1261 tcctgctcat cgacgtcacc ccgctctcct tgggcatcga gaccaagggc ggcctgttca
     1321 ccaagctcat cgagcgcaac acggccatcc cgaccaagcg ttccgaggtg ttctcgaccg
     1381 ctgaggacaa ccagccgagc gtgctgatcc aggtgttcca gggtgagcgt gagatcgccc
     1441 agcacaacaa gcagctcggt accttcgagc tgactggcat cgcccccgcg ccacgtggcg
     1501 tgccacagat cgaggtcacc ttcgacatcg acgccaacgg catcgtcaac gtgtccgcga
     1561 aggaccgggg caccggagtc gagcagaaga tcaccatctc gggtggctcg gccctgccca
     1621 aggaggacat cgagcggatg gtccgcgagg cggaggagca cgccgcggag gaccacaagc
     1681 ggcgcgagga gaccgaggcc cgcaacagtg cggagcagct ggtctactcg accgagaagt
     1741 tcctcgccga caacacggac aagatcccgg cggacagccg cggtgacgtc gacgccgccc
     1801 tcgaggacct caagtcggcc ctcaagccgg agtctggtgt gagcccggac gacctcgcca
     1861 agaagagcgc gaagctctcg gaggagtccc agaaggttgg ggcggcgatg tatgccgcgg
     1921 cgtccgagtc cgagaaggcc ggtgccggcg acggtgccgc gtcgggcgct gacgcgtccg
     1981 cgggcggcgc cgctcacgac gatgtcgtgg acgccgaggt cgtcgaggac gacgagggca
     2041 agaagtgacc gagcactacg cagccggtca gaaccccacg gcttctgatc ccgaggtggt
     2101 ggtgggcgag gaggcttccg agcccacccc cgccgcggcg ggcaccgagt caggagtcac
     2161 tgaccccgac gtcattgagc tggaggcctt ggaggctgag gtcgccgacc agcaggacgc
     2221 cgacgtcgtc acgacctccg acgatgcggc cctggccgcc gagcgacttg ccgaccttca
     2281 acgccttcag gccgagtacg tcaactacaa gcggcgcgtc gaccgcgacc gggccctggt
     2341 gcaggagcgt gcggcccagt ccgtgatcga ggcattgctt ccggtgctgg acgacatcca
     2401 cgcagcccgt gagcacggcg acctgacgga cgggccgttc gccgcaatcg ccgacaagct
     2461 cgagggcgta ctgggtaagt tcggcctcga gcggtacggc gcggtggggg aggacttcga
     2521 cccgatggtc cacgaggccc tcatgcacac ctcgtggccg caggacggtt cggtcatctc
     2581 gacgggatcg accgccgtgg tccaggttct ccagcccggg taccgggccg gcgagcaggt
     2641 gctgcgtgcg gcacgggtcg cggtggcgga tcctgaataa gcgcaagaga gttcacgaca
     2701 tcgatgtgag aggagggcgc cgacgtggct agtcaggact ggttcgagaa ggacttctac
     2761 gccattctcg gcgtccccaa agacgccgac gccgcggcca tcaagaaggc gtaccgcaag
     2821 ctggctcgga cctaccaccc tgaccagaac ccgggggatg cttcggccga gcagcgcttc
     2881 aaggaaatcg gcgaggcgca ctcggtgctc gccgaccccg aacagcgccg cgagtacgac
     2941 gcggtccgtc agatggcccg cggcggggcc cgtttcactg caggtggtcc cggcggtggc
     3001 aacggcgggt tcgacgacgt cttctccagc atgttcggtg gtggcggtgg aggcgccggg
     3061 tcccgagtcc gctactccac cggtggcgcc ggtcagcctg acctcgagga catcctcggt
     3121 gggatgttcg gcagtggcgg cggctcggcc tacgggggct tcggcgctcc gcgaggtccc
     3181 cgcaaggggg ccgacgtcga ggctcggacc accctgtcgt tccgcgacgc ggtgacggga
     3241 gcgacggtca cactgagcgc cgccgacggc agccaggtca ccaccaggat cccggccggg
     3301 gtcaaggatg gacagaagat ccggctgcgc ggcaagggtc agcccggcga cgcgggcgcg
     3361 ccgcccggtg acctgatgct gaccgtggcc gtccagaagc atccggtgtt cgggcgtgag
     3421 ggggacaacc tcaccgttga gctgccggtg acctttgcgg aggctgcctt gggtgcgacg
     3481 gtctcggtgc cgactctcga cgacaagccg gtcaaggtgc gcatcgcccc gggtactccg
     3541 agtggtcggg tgctgcgggt gaagggccga ggggtgcaca agcccgacaa ggccggtgac
     3601 ctcctcgtga aggtcacggt ggtggtgccc cagcggctct ccgacgaggc caaggcagcg
     3661 gttgaggcgc tgcgcgacca cgaggcgggg tacgaccccc gggcggagct gttcgccgag
     3721 gcgcgacagt gactggtcgg cgagacgtca gagatctcaa ggggctgacg cccgacggtg
     3781 acgagccggt gttcgtcatc tcggtggcgg ccaccctggc ggggatgcac gcccagaccc
     3841 tgcggcagta cgaccgcatg ggtttggtca gcccgtcgcg gacccggggg gggcggacgc
     3901 cggtactccg aacgggacgt cgccctcctg cgcgaggttc agcgcctctc ccaggagggg
     3961 gtcagcctcg ccgggatcca acgtgttctc gagctcgaga accaggtgcg tgccttgcag
     4021 tcccgggtct ccgagctggc ggcggatttg cagcggtcgc gcacggccat ctccg
//
LOCUS       DASYFY010000151         2257 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1429758, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000151 DASYFY010000000
VERSION     DASYFY010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429758"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VGN19_02810"
     CDS             <1..753
                     /locus_tag="VGN19_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005504 - fatty acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEV7194847.1"
                     /translation="EYNEGVDVSTEQVAAALRSFKPVSTSRPAPQAFLDAYEKAAADG
                     AEAVVSIHISADMSSTVESAHLAAQHAPVPVTVVDSRSLGMAMGFAVLSAAQLASQGG
                     SADDIAAQARARCEASTVVFYVDTLEHLRRGGRIGAASAFLGSALAIKPILELSDGHI
                     RGLEKVRTSSRALVRLEELAVAAAEAAGSAGVDIAVQHLDSAARAEDLAGRLRERVDP
                     AGEVITVELGAVVGAHVGPGTLAVAVSPRPGP"
     gene            750..1409
                     /locus_tag="VGN19_02815"
     CDS             750..1409
                     /locus_tag="VGN19_02815"
                     /EC_number="2.3.1.275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043772 - acyl-phosphate
                     glycerol-3-phosphate acyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="HEV7194848.1"
                     /translation="MTFSDLSALTNTGHASVWEIAKLPLACVLAFVVGAVNPATLVAR
                     VLGKDLRHSGSGNPGATNAGRVLGTGWGVMVGLLDVLKGLVPVLLAHALIGPITALCV
                     GLAVVLGHIWSPVLRGQGGKGVATSLGAILAVEPWFGVVMVLIFGVLVWRLRWVAGAS
                     ITACVALLVLGVATWVRWVPFGSRDIGAWCVVVAAVVIYRHRRNIELWISARREASST
                     G"
     gene            1486..>2257
                     /locus_tag="VGN19_02820"
     CDS             1486..>2257
                     /locus_tag="VGN19_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009358810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEV7194849.1"
                     /translation="MPLRRVSPEPSPRLRALLETVDARVRAGAAEAAEEPAGVEAPRG
                     LEAAAGVEPWLPQRSWVMAAPDSAAGVQTGVGTAPGVTGAARGRHRRPSPPPPRLLTL
                     PSSLRNARVRAPRAATIGLILVVVLTAAGFGVRVAWAKAASAPRPIAAGATGSAITTG
                     GPRGRFESPPTNAGATATSGGTATPGGTATSGSAGVTVHVVGQVLKPGLVRLPAGSRV
                     ADAVAKAGGARPDADLAAINLARVVADGEQLRVPKPGEV"
BASE COUNT          282 a          717 c          870 g          388 t
ORIGIN      
        1 gagtacaacg agggcgtcga tgtcagcacc gaacaggtcg ctgcggcgct gcggtcgttc
       61 aagccggtct cgacgtccag gccggcgccg caagcgtttc tggatgccta cgagaaggcc
      121 gcggccgatg gtgccgaggc cgtggtctcg atccacatct cggccgacat gtcgtcgacc
      181 gtcgagtctg cccatctagc cgcccagcat gcgcccgtgc ccgtgaccgt ggtggactca
      241 cgatcgctgg gcatggccat ggggttcgcc gtcctgtctg cggcccagct cgcgagtcag
      301 ggtgggtctg cggatgacat cgccgcgcaa gcccgggcgc ggtgtgaggc atcgaccgtc
      361 gtgttctacg tcgatacgct cgagcacctg agacgtggcg ggcgcatcgg cgcggcctcg
      421 gccttcctcg ggtcggccct ggcgatcaag ccgatcctgg aactgtcgga cggtcatatc
      481 cgaggactgg agaaggttcg gacctccagt cgggcgctgg tccgtctcga agagctcgcc
      541 gtcgcggcgg cagaggcggc ggggagcgca ggcgtggaca tcgcggtgca gcatctcgac
      601 tccgctgccc gagccgagga tctggccggc cgcctgcgcg agcgggtcga ccctgctggt
      661 gaggtgatca ccgtggagct cggcgcggtc gtcggggcgc acgtggggcc aggcacgctc
      721 gccgtcgcgg tctcgccgcg accgggtcca tgacgttcag cgacctcagc gccctgacga
      781 acaccggtca cgcttcggtg tgggagatcg ccaagctgcc gctggcgtgc gttctggcgt
      841 tcgtggtggg tgcggtcaat cctgcgacgc tcgtcgcccg agtcctcggc aaggaccttc
      901 ggcattcggg ctcggggaac cccggagcga cgaatgctgg tcgggtcctc ggtacgggct
      961 ggggcgtcat ggtcggactg ctcgatgtcc tgaagggcct cgtaccggtc ctgctggctc
     1021 atgcgctcat aggtcccatc acggcgcttt gtgtggggct ggcagtcgta ctgggtcaca
     1081 tctggtcgcc cgtcctgcga ggtcagggcg gcaagggagt ggcgacctcg ctgggcgcca
     1141 tcctggcggt cgagccgtgg ttcggagtgg tgatggttct gatctttggc gtgttggtgt
     1201 ggcgtctgag atgggtggca ggtgcatcga tcacggcgtg cgtcgcccta ctcgtgctgg
     1261 gggttgcgac ctgggtccgg tgggtgccgt tcggctcgcg ggacatcggg gcgtggtgcg
     1321 tcgtcgtggc cgctgtcgtg atctatcgac atcggcgcaa catcgaactg tggatctccg
     1381 cccggaggga ggcctcctcc acaggctgac gtgagccttg gatggggtcc acagcgtggg
     1441 aggcggcggg gcgctttcgg cgcccaggct tcctagcgtt cccgtatgcc gctgcgccgc
     1501 gtctcgcccg aaccctcccc gcggctccga gcgctgctgg agacggtgga tgcgcgggtt
     1561 cgagcgggag ctgcggaggc agccgaggaa cccgctggcg tggaggcgcc caggggtctt
     1621 gaggcggccg caggggtcga gccctggctg ccgcagcgtt cctgggtgat ggcggcgccc
     1681 gattcggctg ctggcgtcca gaccggtgtc gggacggcgc cgggggtcac cggcgccgca
     1741 cgaggacggc accggcgtcc aagcccacct ccgccaaggt tgctgaccct gccgtcttcc
     1801 ctgcgcaacg cacgcgtgcg ggccccaagg gccgcgacga tcgggctgat cctcgtcgtc
     1861 gtgctgaccg cggccgggtt cggagtccgg gtggcgtggg ccaaggccgc aagtgcccct
     1921 cgaccgatcg ccgcgggcgc tactggttcg gcgatcacca ctggcggtcc acgcgggcgc
     1981 ttcgagtcac ctccgacgaa tgcgggcgcc acggcgacgt cggggggcac ggcgacgccg
     2041 gggggcacgg cgacctcggg gagcgcgggg gtgaccgtgc atgtcgtcgg gcaggtgctc
     2101 aagcccggtc tggtcagact gcctgcgggg tcccgagtgg ccgatgcggt ggccaaggct
     2161 ggtggtgctc ggcccgacgc ggacctggcg gcgatcaact tggcgcgggt ggtcgcggat
     2221 ggtgaacagc tcagggtgcc caagccgggt gaagtcg
//
LOCUS       DASYFY010000152         4398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_116139, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000152 DASYFY010000000
VERSION     DASYFY010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4398
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116139"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VGN19_02825"
     CDS             complement(<1..333)
                     /locus_tag="VGN19_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEV7194850.1"
                     /translation="MTDIAAARARLLEIVKEKAIVHGRVTLSSGREADYYVDLRRITL
                     DGEAAPLVGVVMRDLVKDLEFEAVGGLTLGADPVATAILHAGAASGEQTDAFVVRKAG
                     KAHGLQQRI"
     gene            complement(345..578)
                     /locus_tag="VGN19_02830"
     CDS             complement(345..578)
                     /locus_tag="VGN19_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194851.1"
                     /translation="MSSAHFGDLPRRRWASSTHPVALAAAPPTTAAVTTAAAAPEMTA
                     SMSTSITMRRRVGEVRVTRVEQVIPWLRLTVAG"
     gene            complement(629..1396)
                     /locus_tag="VGN19_02835"
     CDS             complement(629..1396)
                     /locus_tag="VGN19_02835"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7194852.1"
                     /translation="MSTALVTGATAGIGLSFAHQLAERGHDLVLVARDRARLENVSDE
                     LRAKYGVSTEIVVADLSDRADTGKVAERVADQARPVDLLVNNAGYSLKRRFLDNDVAE
                     EEAVFDVLCRAVLVLSHAGANAMRQRGHGAIINVSSVASYITAGPYSAEKSFVTVFTE
                     GLSSELAGSGVTATALCPGFTRTEFHDRAGLNMSRLPGFVWLTSDRLVRDCLADVAKG
                     KVVSVPGAQYKVAVAALRVLPRSLVRKRARTVHRPKG"
     gene            1433..2218
                     /locus_tag="VGN19_02840"
     CDS             1433..2218
                     /locus_tag="VGN19_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003799104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEV7194853.1"
                     /translation="MRIATWNVNSIRSRIDRVEGWLQRSDVDILSIQETKATDAQFPF
                     ERLRALGYEVAHHGLNHWNGVAILSRVGLSDVEPSFAEAPAWGEPAAVEARALTATCA
                     GIRITSVYVPNGRHIDDPHMAYKLAWLAQLRNHAAQWVASGQPAAIMGDWNIAPQDED
                     VWSMEYYLDKSHVSPPERAAFQAILDAGYVDVVRPHTPGPGTYTYWDYTRLAFQKRRG
                     MRIDFILGSEPFAARVTGAAIDREERKGVGASDHAPVVVELED"
     gene            2218..3102
                     /locus_tag="VGN19_02845"
     CDS             2218..3102
                     /locus_tag="VGN19_02845"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7194854.1"
                     /translation="MTRTFAVAAHDGSMLRVQEFTPDPAHQAAGRPSDPALPTVVLAH
                     GWTLTRKSWLPVVERLVADGLRVVAYDQRGHGGSSPLRGKASVRALGDDLAAVLGVVA
                     PNGPVVLGGHSMGGMTVMAYAGLHPQDFASRVVGVVLVSTSAGQLRSALRSVEARAMS
                     LAARLPRIPVGRLVTTRGQRHLLFGVDADPEHVRLTREQVASTTLPTMGRFFAALNEH
                     DEAAALAGFAGVPTVILVGDRDKLTPPRHSRTLAELVPHAELVVLPGRGHMLGYEATD
                     EVVAAFRSVLDAAQSQPG"
     gene            complement(3067..>4398)
                     /locus_tag="VGN19_02850"
     CDS             complement(3067..>4398)
                     /locus_tag="VGN19_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7194855.1"
                     /translation="VLVTGRVLQGVGGGGLVPATLALVADLWPPGRRGMPLGVVGAVQ
                     ELGSVLGPVFGAVILTVSGWRTIFWVNVVAGLVLAFAVLVIGGEGLRRPRGIPLGLGA
                     LALATAGLALWAPARLVTDVTLGLPFVPFGGATSRLATPIGVAAVALGLLWLGVSLPR
                     AWPVLRRADLLGALLLGLSLGCVVLTFAASDPQREVVGPVGWLLLPLGVVALGGYLWR
                     HRSAAEPLIARGALRGRAAAALTTSLLVGAALVSVVVDVPVLARLTFTSSQTVAAFVL
                     VRFLVAVPVGALLGGWSLHRLGDGLVSGVGLVIAAIGLVAMSRWGQGSLASPLATVVL
                     VAVGLGIGLAVAPVNNAALAHMPPDAHATASALVVVSRMVGMVVGLALLTAIGLHRYY
                     ETVAALPNQGDTGALVAAGVVQVQTVFLGAAVAATLGAVASAGLGLRRVEH"
BASE COUNT          724 a         1613 c         1506 g          555 t
ORIGIN      
        1 gatccgctgc tgcagcccgt gggccttccc tgccttgcgc accacgaacg catcggtctg
       61 ctcccccgag gccgcgccgg cgtgcaggat cgcggtggcc accgggtccg cgccgagcgt
      121 caacccgccg acggcctcga actccaggtc cttgaccagg tcgcgcatca cgacgccgac
      181 caggggggcc gcttcgccgt cgagggtgat ccggcgcagg tcgacgtagt agtccgcctc
      241 acggcctgag gacaacgtca ctcggccatg cacgatggcc ttctccttca cgatctcgag
      301 caggcgggca cgggcggcag cgatgtcggt cacggttcgt cagcctatcc agccacagtc
      361 agccgcagcc acgggattac ctgctccacg cgcgtcaccc ttacctcgcc gacccgtctc
      421 ctcatcgtga tggaggtgct catgctcgcg gtcatctcag gggccgccgc ggccgtcgtg
      481 acggcagccg tcgtgggagg cgccgccgcc aaggcgacag gatgggtcga cgaagcccat
      541 cgccgtcgcg gcaggtcacc gaaatgagcg ctgctcatgc tcccgggtct ggggtaggcc
      601 gcgcggccga gcctcgcggc atacccggct agcccttggg gcggtgaacg gtccgggcac
      661 gcttgcggac cagggacctg gggaggacgc gcagggcggc gacggccacc ttgtactggg
      721 cgcccggcac ggagacgacc ttgcccttgg ccacatccgc gagacagtcg cggacgagcc
      781 gatctgacgt gagccacacg aaccccggca ggcgcgacat gttgaggccg gcgcgatcgt
      841 ggaactcagt gcgggtgaac cccgggcaca acgcggtggc ggtcacgccg gacccggcca
      901 gctcgctgga caacccctcg gtgaagacgg tgacgaaaga cttctccgcg gagtaggggc
      961 ccgcggtgat gtacgaggcg accgacgaga cgttgatgat ggccccgtgg ccccgttggc
     1021 gcatcgcgtt ggccccggca tgggagagga ccagcacggc ccggcacaac acgtcgaaga
     1081 ccgcctcctc ctcggcgacg tcgttgtcga ggaaccgccg cttcaaggag tagcccgcgt
     1141 tgttgaccag cagatcgacc ggacgcgcct ggtctgccac ccgttcggcc accttgccgg
     1201 tgtcggcgcg gtcgctgagg tcagcgacca cgatctcggt cgagacgccg tacttcgcgc
     1261 ggagctcgtc cgagacgttc tccaggcggg cacggtcgcg ggcgacaagc acgaggtcgt
     1321 ggccgcgctc ggcgagctgg tgggcgaagg acaggccgat gccggcggta gcgccggtga
     1381 cgagggcagt actcatggag gcactctagg acggcacccc tagggtgggc gggtgcgtat
     1441 tgcgacctgg aacgtaaact ccatccgctc acgcatcgat cgcgtcgagg gttggctgca
     1501 acgcagcgac gtcgacatcc tgtcgatcca ggagaccaag gcgactgacg cgcagttccc
     1561 gttcgagcgg ctacgcgcgc tgggctacga ggtggctcac cacgggctca accactggaa
     1621 cggagtggcc atcctgtcgc gggtcgggct cagcgacgtg gagccgtcct tcgccgaggc
     1681 cccggcctgg ggtgagcccg ccgccgtcga ggcccgcgcg ctcaccgcca cctgcgccgg
     1741 catacggatc acttcggtgt acgtgcccaa cgggcgccac atcgacgacc cgcacatggc
     1801 gtacaagctc gcctggctcg cgcagctccg taaccacgcc gcgcagtggg tcgcgagcgg
     1861 acagccggcg gcgatcatgg gcgactggaa cattgcgccg caggacgagg acgtctggtc
     1921 gatggagtac tacctcgaca agagccatgt ctcgccaccg gaacgcgccg ccttccaggc
     1981 catcctcgac gccgggtacg tggacgtcgt caggccgcat acccccgggc cgggcaccta
     2041 cacctactgg gactacaccc ggctcgcctt ccagaagcgg cgtggcatgc gcatcgactt
     2101 catcctcggg tccgagccgt tcgcggcccg cgtcacgggc gccgcgatcg accgcgagga
     2161 acgcaagggc gtgggcgcct ctgaccacgc gcccgtggtc gtggagctgg aggactgatg
     2221 acacgcacct tcgcggtggc cgcgcacgac ggctcgatgc tgcgggtcca ggagttcacc
     2281 ccggatcctg cccaccaggc tgctggccgt cccagcgacc cggccctccc cacggtggtc
     2341 ctcgcgcacg gctggacgtt gacccggaaa tcctggctgc ccgtcgtcga gcggctcgtg
     2401 gccgacggac tgcgcgtggt cgcctacgac cagcgcggtc atggcggctc gagcccgttg
     2461 cggggcaagg ccagcgtgcg ggcgttgggc gacgacctcg ccgcggtgct cggggtggtc
     2521 gcgcccaacg gtcccgtcgt gctgggtggc cactcgatgg gcggcatgac cgtgatggcg
     2581 tatgccgggc tgcaccccca ggacttcgcc tcccgcgtgg tgggcgtcgt gctggtctcc
     2641 acctcggccg ggcagctgcg cagcgcgctg cggtcggtgg aggcacgggc gatgtcgctg
     2701 gccgcacggt tgccacggat ccctgtgggc cgcctggtga ccacgcgcgg gcagcggcac
     2761 ctgttgttcg gcgtggacgc cgaccccgaa cacgtgcgcc tcacccgcga gcaggtcgcc
     2821 agcaccaccc tgccgacgat gggccggttc ttcgcggccc tgaacgagca cgacgaggcg
     2881 gcggcgctgg cgggtttcgc cggggtcccc acggtcatcc tggtcggcga ccgcgacaag
     2941 ctcaccccac cgcgacactc ccgcaccctc gccgagctcg tgccccacgc cgagcttgtc
     3001 gtcctgccgg gtcgtggtca catgctgggc tacgaggcca ccgacgaggt cgtcgcggcg
     3061 ttccgctcag tgctcgacgc ggcgcagtcc caacccggct gaggccactg cccccagggt
     3121 cgcggcgaca gccgcgccaa ggaacaccgt ctgcacctga accaccccgg cggccaccaa
     3181 ggcgccggtg tcgccctggt tcggcagggc ggccaccgtt tcgtagtacc ggtgcagccc
     3241 gatggcggtg agcagtgcga ggcccaccac catcccgacc atgcgcgaca ccacgacgag
     3301 ggcactcgcc gtggcgtgag cgtccggcgg catgtgcgcc agggcagcgt tgttgaccgg
     3361 ggcgaccgcg agcccgatgc ccaagcccac cgccacgaga accaccgtag ccagcggaga
     3421 ggccagcgag ccctgccccc aacggctcat cgcgaccaga ccgatcgcgg cgatcacgag
     3481 gccgaccccg ctgacgaggc cgtcgcccag gcgatgcagc gaccagccgc cgagcaaggc
     3541 cccgaccggc acggcgacca gaaaccgcac gagcacgaag gccgcaaccg tctggctcga
     3601 cgtgaaggtc agacgggcca gcaccggcac atcgaccacg actgagacga gggcggcgcc
     3661 gaccaggagg ctggtcgtca gcgctgcggc cgctcggccc cgcaaggcac cccgagcgat
     3721 gaggggctcg gcagcggacc gatgccgcca gaggtaaccg cccaacgcaa ccacgcctag
     3781 gggaagcaac agccaaccca ccggcccgac gacctcacgc tggggatcac tggcggcgaa
     3841 cgtcagaacg acgcagccca agctgagccc caggagcaag gccccaagca gatcggcccg
     3901 tcgcaggacc ggccaagccc gagggaggct cacaccgagc cacagcagcc ccagcgccac
     3961 ggccgccacc ccgatggggg tcgccagccg gctggtggca ccgccgaacg ggacgaacgg
     4021 cagcccgagg gtcacgtccg tgaccaaccg ggcgggtgcc cacagcgcca gaccagcggt
     4081 cgcgagcgcc aaagccccga gacccagcgg tatgccgcgt ggccgccgca gcccctcacc
     4141 tccgatgacc agcacggcga acgccaggac cagcccggcg acgacgttga cccagaagat
     4201 cgtgcgccac cccgacacgg tcaggatgac cgcgccgaag accggaccga gcacgctacc
     4261 cagctcctgg acggcaccga cgacgcccaa cggcataccg cgcctgccgg gaggccacag
     4321 atctgccacc agagcgagcg tggccggcac caacccaccg ccacccaccc cttgcagcac
     4381 tctgccggtg acgagcac
//
LOCUS       DASYFY010000153         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_63051, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000153 DASYFY010000000
VERSION     DASYFY010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63051"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..911)
                     /locus_tag="VGN19_02855"
     CDS             complement(216..911)
                     /locus_tag="VGN19_02855"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7194856.1"
                     /translation="MEASPVDRHDYRSVSDAYDTVAEDYATHIPDTRAEAPLDLAMID
                     AFVAEVTSSAVTSSAVTSSAAPMVLDAGCGAGRISRHLAERGCRVVGVDLSPGMVAMA
                     RRDHGDLTFTVGSLSELPYPDDQFDGVMLWYSIIHTPPAGQARIFAEAARVVRPGCHV
                     LVGFQSGDGARDVSAAYRRFGHDIQLERHLYTADQVATRLRTAGLRELSRLVRRARGI
                     EKDDQAVLLATAS"
     gene            complement(972..1343)
                     /locus_tag="VGN19_02860"
     CDS             complement(972..1343)
                     /locus_tag="VGN19_02860"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194857.1"
                     /translation="MLTATMVVATLPVTDLDRARRFYGQTLGLTELWENPASIRFSCG
                     EHSELSVFKRPWPETAHTLAHFEVEDIEGAVGDLEAKGVTFLDYAEGPLVTTGHIATI
                     GPARAAWFTDPDGNALGLRQG"
BASE COUNT          233 a          482 c          546 g          253 t
ORIGIN      
        1 cagctcggtt gcgtgtccag cgtgctcggt cgcctgcagg tccaccgtga gggtgggtgc
       61 cagacgcgcc aggtctcgct gcaggtcttc agctcgctcc tgtgcctgac cagtgctctg
      121 agggttgaag atcaggacca cgcgatcaaa ggggggcacg ggggccagcc taggcacact
      181 cggcaccggg ccagaccacg ccgccagatc gcgggtcagc tcgcagtggc gaggagcacc
      241 gcctggtcgt ccttctcgat tccgcgagcg cgtcgtacga ggcggctcag ttcgcggagg
      301 ccagcggtgc ggagccgggt ggctacctga tctgcggtgt agaggtggcg ctcgagctgg
      361 atgtcgtgac cgaatcgccg gtatgccgcg gacacgtcgc gcgcgccgtc gcccgactgg
      421 aatccgacca gaacgtgaca gccggggcgc acgacccgcg cggcctccgc gaagatgcgc
      481 gcctgtccgg ccggcggcgt atggatgatc gagtaccaca gcatcacgcc gtcgaactgg
      541 tcgtccgggt acggaagctc gctgagtgag cccaccgtaa atgtgaggtc gccatggtca
      601 cgccgcgcca tagccaccat gcctggggac aggtcaaccc cgacgacgcg gcatccccgc
      661 tccgccaggt gacggctgat tcggcccgcg ccgcatccgg catcgaggac cattggggca
      721 gcgctcgagg tcacggcgct cgaggtcacg gcgctcgagg tcacttctgc gacgaaggcg
      781 tcgatcattg cgaggtcgag gggagcctcc gcccgggtgt cggggatgtg ggtggcgtag
      841 tcctccgcga cggtgtcata ggcatcgctg actgagcggt agtcgtgtcg atctacgggt
      901 gacgcctcca cgccgcgaat gatcgcacgc ccgggtccgg ggacgggtca gccggcgggt
      961 cagccggcgg gtcagccctg tcgcaggccc agggcgttgc cgtcggggtc ggtgaaccac
     1021 gccgcccgcg cggggccgat cgtcgcgatg tggccggtgg tgaccagcgg tccttcggcg
     1081 tagtcgagga aggtgactcc tttggcttcg aggtcaccga ccgcgccttc gatgtcctcg
     1141 acctcgaagt gggcaagggt gtgtgccgtc tcaggccacg gacgcttgaa caccgacagc
     1201 tcactgtgct cgccacagct gaagcggatt gaggctgggt tctcccacag ctcggtcagg
     1261 cccagggtct gcccgtagaa gcgtcgtgct cggtcaagat cggtgacggg gagcgtggcc
     1321 acgaccatgg tggctgtgag catgggaatc ctcccgggtc ttggacttcg tggggccagc
     1381 ctcgtccgtg cttccatcat cgctgtactg cgaaccgcgt accgaacgtg ccggtgtcgg
     1441 gttgagacgc cgcggaggaa gtagcaagcg tcccggcggg gggagctgcg taactccctt
     1501 gcaaccccga atgc
//
LOCUS       DASYFY010000154         1753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_325379, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000154 DASYFY010000000
VERSION     DASYFY010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325379"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1488
                     /locus_tag="VGN19_02865"
     CDS             <1..1488
                     /locus_tag="VGN19_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEV7194858.1"
                     /translation="LCHIDNAYWIPNVRVNGRIAQTHKTSQTAFRGFGGPQGMLVIED
                     ILGRCASLLGIDPIDLRRRNFYVEGQETPYGQPVRHPERAAVCWDQVLRTGDVVARRA
                     EIAAYNAAHQHTKRALAMTPVKFGISFNFTAFNQAGALVHVYKDGSVLITHGGTEMGQ
                     GLHTKMLQVAATTLGVPLSTVRLAPTRTDKVPNTSATAASSGADLNGGAVKNACEQVI
                     DRLRAVAAGRLGVHPADVTFSDGRVGAVGRGESVAWADLVNQAYFQRIQLWAAGFYRT
                     EGLHWDSSVMHGSPFKYFSYGVAASEVEVDGFTGAYRLRRVDIVHDVGDSLSPLVDIG
                     QVEGAFVQGAGWLTLEDLRWDESDGPSRGRLATQAASTYKLPSFSEMPEVFNVALLER
                     AHEDGAVYGSKAVGEPPLMLAFSVREALRQAAAAFGPDGVCVDLASPATPEAVYWALE
                     QARRASEHGHVAQGAPGVVPAQPQSDAQPLTPRSEKAQRTVPTGA"
     gene            1490..>1753
                     /locus_tag="VGN19_02870"
     CDS             1490..>1753
                     /locus_tag="VGN19_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEV7194859.1"
                     /translation="MQWLAAVERLRRERRPGVLVTLVSVRGHAPRGAGAKMVVAAEDA
                     WGSIGGGNLEATAVQRARAMLADGRDVPETIELALNDKAPVEHG"
BASE COUNT          266 a          603 c          635 g          249 t
ORIGIN      
        1 ctgtgtcaca tcgacaacgc ctactggatc ccgaacgtgc gggtgaacgg gcgaatcgcc
       61 cagacgcaca agacatcgca gactgccttc cgcggcttcg gtggcccgca gggaatgctc
      121 gtcatcgagg acatcctggg ccggtgcgcg tcgctgctgg gcatcgaccc gatcgacctg
      181 cggcgccgca acttctacgt cgagggccag gagacgccgt acggccagcc ggtgcgccat
      241 cccgagcggg ccgccgtatg ttgggaccag gtcctgcgga ccggcgacgt cgtcgcgcgc
      301 cgggctgaga tcgcggcata caacgcggcg caccagcaca ccaagcgcgc gctggccatg
      361 acgcccgtca agttcgggat ctcgttcaac ttcacggcct tcaaccaggc cggggcactc
      421 gtgcacgtct acaaggacgg ctcggtgctg atcacgcacg gtggcaccga gatggggcag
      481 ggactgcaca ccaagatgct gcaggtcgcc gccaccacgc tcggggtacc gctgtccacg
      541 gtgcgcctcg cgccgacccg caccgacaag gtgcccaaca cctcggcgac tgcggccagc
      601 tccggtgccg acctcaacgg tggtgccgtc aagaacgcct gtgagcaggt catcgaccgg
      661 ctgcgcgccg tcgccgcagg ccggctcggc gtccacccgg cggacgtgac cttctcggac
      721 ggtcgggtcg gcgcggtcgg taggggtgag tcggtggcct gggccgacct ggtgaaccag
      781 gcctacttcc aacggatcca gctgtgggca gcgggcttct atcgcaccga gggcctgcac
      841 tgggactcct cggtcatgca cggctcgccg ttcaagtact tctcgtacgg tgtggctgcc
      901 tccgaggtcg aggtcgacgg cttcacgggg gcgtaccggc tgcggcgggt cgacatcgtg
      961 cacgacgtgg gcgacagcct gtcgccgctc gtcgacatcg gccaggtcga gggtgccttc
     1021 gtgcaggggg cggggtggct caccctcgag gacctccgct gggacgagag cgacgggcca
     1081 tcgcgggggc ggctggccac gcaggccgcg agcacgtaca agctgccgag cttctcggag
     1141 atgccggagg tcttcaacgt cgcgctgctc gagcgggctc acgaggacgg ggcggtatac
     1201 ggctccaagg cagtcggcga accaccactc atgctcgcct tctccgtacg cgaggcgctc
     1261 cggcaggccg cggccgcctt cggtcccgac ggagtctgcg tcgacctggc ctcacctgcc
     1321 acgcccgagg cggtgtactg ggcgctggag caggcgcgtc gcgccagtga gcacggccat
     1381 gtggcgcagg gcgcacccgg ggtcgtcccc gcccaaccgc agtccgacgc ccagccgctg
     1441 actccacggt cggagaaggc gcaacggacc gtccccacag gagcctgacg tgcagtggct
     1501 ggccgccgtc gagcggctcc gtcgggagcg cagaccgggg gtgctggtca cgctggtctc
     1561 ggtccgcggg cacgcgccgc gcggtgcggg agccaagatg gtcgtcgcgg ccgaggacgc
     1621 ctgggggagc atcggtggcg gcaacctcga ggccacagcg gtgcagcgcg cgcgggcgat
     1681 gctcgctgat gggcgtgacg tgcccgagac gatcgagctg gcgctcaacg acaaggcgcc
     1741 ggtcgagcac ggc
//
LOCUS       DASYFY010000155         9758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1220023, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000155 DASYFY010000000
VERSION     DASYFY010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9758
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1220023"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VGN19_02875"
     CDS             <1..186
                     /locus_tag="VGN19_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194860.1"
                     /translation="SVTEPIVRCRMVGVAQVGVASRPGLLRAISAHHDLLAGAYAEVV
                     TTGVVAVGDQVCLAPRR"
     gene            219..1709
                     /locus_tag="VGN19_02880"
     CDS             219..1709
                     /locus_tag="VGN19_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase N-terminal domain-containing
                     protein"
                     /protein_id="HEV7194861.1"
                     /translation="MPTLQEVLHAATDLEPAEAEWLHLLVGDWQLISDLSFADLVLWV
                     PAGLEGWLAVAHVRPTTGQMVFFEDVVGRRTHRGRQSLLDQAYLDRRIVRQKDPIFRD
                     DMPVREEAIPVVRAGRALAVLTRHTNLAAMRTPSRLELTYQSLADALARMIAAGEFPN
                     ASAPTGQRRGAPRVGDGVIRLDVNGVVSYASPNALSAIHRLGHVGDVIDELLAKVVAD
                     LLRDESPVDESLAVVVTGRAPWRTEVSSRGASVSMRAIPITEGGQRVGALLLVRDVSE
                     LRRREQDLITKDATIREIHHRVKNNLQTVAALLRLQARRLPAGEAGRVALEEAVRRVG
                     VIALVHETLSQGFDETVNFDDIAVRGLQAVTEVAKIEHPIGTSVTGSFGLLRAEDATA
                     MAMILSELVQNAVEHGVGDDGGGHIAVHAERSVVEGEELLTVTITDDGAGLPEGFTPG
                     RSGLGTQIVQSLVQDLRGRITWKAASPRGTEVRFVARLRPLGRDGS"
     gene            complement(1726..1974)
                     /locus_tag="VGN19_02885"
     CDS             complement(1726..1974)
                     /locus_tag="VGN19_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEV7194862.1"
                     /translation="MDWRDRAACLDEDPELFFPIGNTGPAILQIEEAKAVCRRCEVVD
                     TCLKWAIESGQDAGVWGGMSEDERRALKRRNARARRAG"
     gene            2384..2797
                     /locus_tag="VGN19_02890"
     CDS             2384..2797
                     /locus_tag="VGN19_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194863.1"
                     /translation="MSDPTRIAHDPSGQPSANPLRRVAAGVCALEALTLLGFCVFYLW
                     ELGQGASADATRAVVSALLIAVMAVGLAVLARSWWRGAGWPNTPTVVWNLLLLPVAWS
                     LAQAGHVLIAVAVGVVALAGVVAAIGARSNQATLE"
     gene            complement(2825..7030)
                     /locus_tag="VGN19_02895"
     CDS             complement(2825..7030)
                     /locus_tag="VGN19_02895"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
                     /protein_id="HEV7194864.1"
                     /translation="MRVRLTVCLLEAPRRPGTPPDATVHELEFGAPEGSTVNELSTAV
                     ARHFSRAGDHELLMRGELLPSSTPLGVAPLVDGASVTCRPSSSAPTPAPRRRSLPVSP
                     VGVAVAHGPDAGWLLELSPGRHTVGRSREADTLVADPALSRVHLEIRCDADGLQVRDL
                     ASTNGTRMDGQSVGSTEVRWRPGAAVTAGDTELVARRTSGLPATSAARRDGTQLVNRR
                     PRVAQPQPHQTATLPPHPQRQAATRVPWVAIALPIPIAVVMAYFLGPAMLAFTLASPL
                     AMVGNLLNDRIQGRRRYAAELAEHDRSSAEVLASIGAACARERAARRRDHPDPAEILE
                     IATAPTARLWERRRDDPDALAVAIGTCTSPARLLTVRTPNGEVGEPPGISAAPCVVHL
                     AEVGVLGMGGERSAVLGAVRSIVGQLLSLHSPIDLRVVLLCAHDSGDDWRWLDRVPHV
                     RAAGGDTDPGTAVLAWDDGRAKAVVDDLVREVEENSSPGGGGPSRWTGPRTLLVLDGA
                     ADLRAIPGLTRVLAAGQAVGISTVALDNKSGALPIESGAVVDLSTPGTPTLNVPGHDH
                     DQLTVDLVGDWWADRLSRGLAPLRDAAPAESDAWLPSSVRLDELLPSPTTPAAVVDLW
                     RRGPTTAVPLGLTARGPWVLDLATDGPHLLVAGTTGAGKSELLRTLVVALALHNRPED
                     LAFVLVDYKGGAAFGDCGRLPHTAGLVTDLDDHRALRALASLHAELRRRESILRSAGV
                     SDFSAYQGLSRHGPSLPRLLIVIDEFRALVDELPTFVHGMVRVAALGRSLGLHLVLAT
                     QRPAGVVTADIKANVNLRIALRVRDRSDSEDVIEVADAANIGPTTPGRGHARAGGATL
                     TTFQAAQVLAPSQEAGVRIRELRWGEAPGEWTSIPEARRPRDELPRLVEVVRRASAEV
                     GAVPSPPAWLPPLPEAVALASLRPVSDPDSCSIGLIDLPDRQAREPLQFKAEGGGHWA
                     FVGTSGSGRTTALLTVAHALAGQRGPTRLHLYAVSSGSLASLTELAHCGAHVAPDDLP
                     RLERLVGRLEQEVRARRHGAESRAALLLLIDDWDILATRPASVDHALLVDRTLGLLRE
                     GTAHGLTAALAGDRSLVVGRVGSIVSQRVLLRLADRTDAALAGISPGAVPIDAPPGRG
                     VLADGTHVQLALWLGERVMTAAIPGEALPARVDPLPVRVALTDLVLDLDPSAVGVGVG
                     GDELATIGLRPSIEGRRWLVAGASGSGVSTTLLLLGRQLMAQKHPVAVVSRRAGPLDA
                     LRLDGRLEAWCDTDSRASLDEARRRCPGLAVLVDRVDELVDSAIEAAVRDFGRSVDHH
                     GGLLAVGANSSSLATQYRGLGTDVARERSGVLLGPRAPVDADPFGLRLRIEPHAPPGR
                     GYLVRRGVPAPVQVAFPGVPTAG"
     gene            7201..7818
                     /locus_tag="VGN19_02900"
                     /pseudo
     CDS             7201..7818
                     /locus_tag="VGN19_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775635.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
     gene            8088..9005
                     /locus_tag="VGN19_02905"
     CDS             8088..9005
                     /locus_tag="VGN19_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194865.1"
                     /translation="MIDVGAAAAINATISSIVLAALSLWASAVVGELASQKRRILESA
                     DKVNQLPDTGSMGAQALANDPESIRQSVKDFVMLGMGVGPHAFDSADDNRGQRFMSLM
                     TSLAAHYPFRRTMRPSEEGGVVIGGAPELVEFKSIDDVTRWVQDAESLTGQVEWLFSA
                     HRGKVGELISAADAAFRPLGPDLDRLGQHLSPGALSDIAQYFVDNPRVAASLTDAFLL
                     KVGGLSAIAVETRGYLQIRQAYLGRTQWRRWLLIGAGLSVVSLFTGAVIPMLFPHVSG
                     IVYLWVPGLIYLASGLMGLGALARALASD"
     gene            complement(9279..>9758)
                     /locus_tag="VGN19_02910"
     CDS             complement(9279..>9758)
                     /locus_tag="VGN19_02910"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7194866.1"
                     /translation="HRRPNPDYLPPVELLRRHSQIGPYTIEAQPPSLELHDLHAVGLS
                     TLRRTIHNEATAGSVLPQDQIDDFLEAISEIASNALVHGTGQVSVRAWVTQQRLVCTI
                     TDHGSGFDDPLAGFLPAPLNGLPVHGAGLWLARNFSDSLDFSTTADGFTARIACWTN"
BASE COUNT         1513 a         3187 c         3485 g         1573 t
ORIGIN      
        1 tccgtcaccg agccgatcgt gcgatgccgc atggttggag tggcgcaggt cggggtcgcc
       61 tcgcgaccgg gcctgctgcg ggccatcagc gcccaccatg acttgttggc aggcgcctat
      121 gccgaggtcg tgaccactgg agtcgtcgcg gtcggcgacc aggtgtgcct ggcgccccgg
      181 cgatgaacgg acagccccgc cccgattagt cttccctcgt gcccacgctg caggaggtac
      241 tccacgccgc cacggacctc gaacccgccg aggccgagtg gttgcatctg ctggtggggg
      301 actggcagct catctccgac ctgtcgttcg cagacctcgt gctctgggtg cccgccggtc
      361 tggaggggtg gctcgccgtc gcgcacgtgc gtccgacgac cgggcagatg gtgttcttcg
      421 aggacgtggt gggccggcga acccatcggg gccgacagtc attgctcgac caggcatatc
      481 tggaccggcg catcgtgcgg cagaaggacc cgatcttccg tgacgacatg ccggtgcggg
      541 aggaggccat tccggtggtg cgtgccggcc gcgcgcttgc cgtgctgacg cggcatacca
      601 acctggcggc gatgcgcacg ccgagccgac tcgagctgac gtaccagtcc ctcgccgacg
      661 cgttggcgcg gatgatcgcc gccggggagt tccccaacgc ctcggcgccc acagggcagc
      721 gccgcggcgc gccccgagtg ggcgacggcg tcatccggct cgatgtcaac ggggtcgtgt
      781 cgtacgccag tcccaacgca ctgtcggcga ttcaccggct cggacacgtt ggcgacgtca
      841 tcgacgagct cttggccaag gtggtcgcgg acctcctgcg agatgagtcg cccgtcgacg
      901 agtccctggc cgtggtggtc accgggcgag cgccgtggcg caccgaggtc agcagtcgcg
      961 gggccagcgt gtccatgcgc gctattccga tcaccgaggg tggacagcgg gtcggtgcgc
     1021 tactactcgt gcgggatgtc tcggagcttc ggcgtcgcga gcaggacctc atcaccaagg
     1081 acgcgacgat ccgcgagatc catcaccgag tgaagaacaa cctgcagacc gtggccgcct
     1141 tgctgcgcct ccaggcccgg cgcctgcctg ccggggaggc gggacgcgtt gcgctggagg
     1201 aggcggtgcg gcgggtcggg gtgatcgccc tggtccacga gaccctgagt caggggttcg
     1261 acgagaccgt gaacttcgac gacatcgctg tgcgcggcct tcaggcggtg accgaggtcg
     1321 ccaagatcga gcatccgatc gggacaagtg tcacggggtc gttcgggttg ttgcgcgccg
     1381 aggatgccac ggccatggcg atgatcctgt cggaactcgt ccagaacgca gtcgagcatg
     1441 gggtcggcga cgacggcggc gggcacatcg cggttcacgc cgagcgaagc gtcgtcgagg
     1501 gtgaggagct actcacggtg acgatcacgg acgacggcgc aggacttccc gaaggcttca
     1561 cgcccggcag gtctgggcta gggacccaga tcgtccagtc gctggtgcag gacctgcgcg
     1621 gtcggatcac ctggaaggct gcgtcgccgc gggggaccga ggtgcgcttc gtcgcccggc
     1681 tgcggccgct cggcagggat gggtcctagc gaccgcgagc ctgggtcagc ccgcgcggcg
     1741 ggcgcgggcg ttgcgacgct tgagggcacg gcgctcgtcc tcggacatgc ccccccagac
     1801 tccggcgtcc tgaccggact cgatggccca cttcaggcag gtgtcgacga cctcgcatcg
     1861 ccggcacact gctttggcct cctcgatctg caggatcgcc gggccggtgt tcccaatcgg
     1921 gaagaacagc tcggggtcct cgtcgaggca ggccgcgcgg tcgcgccagt ccatgaagat
     1981 cgtgctcctt gtcatgcgga agggggtatc gcaggaagtg cgccgaggcg gttcagggct
     2041 aggaaccttc ggcgcacggc gcttcgttgc gggcgtgcat tggtgctctg gtgctcgggt
     2101 cgtgccactg gtggggcgcg accggccatc gtaaccgact cacttccaca caggcgaagg
     2161 catgtgcggt caccattgtc atggtccgag cgcacttgtg ccaacggctt gccgggcgtt
     2221 tctgttccag cctcacagaa cggcgcctat tccggaagag caaagcgcag gttaccgcac
     2281 cgtaacgttg agggcttagt cacagttcgt cccatcacga ctggtccggc ggttcgactg
     2341 cccagagacg aacgcggttc gcgatcggca tacgctggcg gccgtgagtg acccgacgcg
     2401 catcgcgcat gacccctccg gccagccttc ggccaacccg ctgcgccgcg tcgcggcagg
     2461 ggtgtgcgcc ctggaagcgc tgacccttct cgggttctgc gtgttctacc tctgggagct
     2521 tggtcagggt gccagtgcgg acgcgacccg ggccgtcgtg tcggcccttc tcattgcggt
     2581 gatggcggtg gggctggcgg tcttggctcg gtcttggtgg cgcggtgccg ggtggccgaa
     2641 cacgcctacg gtggtctgga acctcctgtt gctgccggtg gcgtggagcc tggcgcaggc
     2701 tgggcatgtt ctgatcgcgg ttgcggtcgg cgtcgtagcc ctggctgggg ttgttgcggc
     2761 gatcggggcc cgcagcaacc aggcgacgct cgagtagcgt cgcgaagagg ggccaccctc
     2821 tcgcctaccc ggctgtcggt acgccgggaa aggccacctg aaccggagcc ggcacgcccc
     2881 gtcgcaccag atagccacgc cccgggggtg catgcggctc gatgcgcagg cgcaggccaa
     2941 acgggtccgc gtcgacgggt gctctcggcc cgagcagaac tccggaccgc tcccgtgcca
     3001 cgtcagttcc gagcccccgg tactgggtgg ccaagctgga cgagttcgcg cccaccgcga
     3061 ggagcccgcc gtggtggtcc acgcttcgcc caaagtctcg aaccgctgcc tcgatggcgg
     3121 agtcgaccag ttcgtcgacg cgatccacga ggaccgcgag gccaggacac cgacgtcggg
     3181 cctcgtcgag gctggcgcgt gagtcggtgt cacaccaggc ctcgagccgt ccatccaggc
     3241 gtagggcatc gagcgggccg gctcgccgtg agaccaccgc cacaggatgc ttctgagcca
     3301 tcagctgccg gcccaacagc agcagggtcg tggaaacccc gctgcctgac gcgccggcaa
     3361 ccaaccagcg ccgcccctcg atggaggggc gcagccctat ggttgccagc tcgtctccgc
     3421 cgacacccac cccgacggcg ctggggtcca ggtcgagaac gaggtcagtg agcgcgaccc
     3481 gaaccggcag cgggtccacc cgcgccggaa gggcctcgcc gggaatcgcg gcagtcatca
     3541 cacgttcgcc gagccacagt gccagctgca catgcgtccc gtcggccagc accccgcgac
     3601 cgggtggcgc gtcgatcggc acggccccgg gcgagattcc cgccagggcc gcgtcggtcc
     3661 ggtcggccag gcgcaagagc acgcgctggg agacgatcga gcccacccga ccgacgacca
     3721 gcgagcgatc accagccaga gcggctgtga ggccgtgagc cgtgccctcg cggagcagcc
     3781 cgagggtgcg gtcgacgagc agggcgtggt caacggatgc cggacgggtc gcgagaatgt
     3841 cccagtcgtc gatcagcagc aacagagccg ctctcgactc cgccccatga cgtcgcgccc
     3901 gaacttcctg ctcgaggcga ccgaccagac gttccaggcg aggaaggtca tcaggcgcca
     3961 cgtgggcacc gcagtgtgcg agctcggtga gcgacgccag gctgcccgac gacacggcat
     4021 acaggtgcag gcgggtgggg cctcgctgcc cggctagcgc gtgggccacg gtgagcaacg
     4081 ccgtcgtacg cccacttcct gaggtaccca cgaacgccca gtgcccgccg ccctcggcct
     4141 tgaactgcaa gggctcccgg gcttggcgat ccggcaggtc gatgaggccg atggagcagg
     4201 agtcagggtc tgacacaggg cgcaaggacg ccagagcgac cgcctcgggc agcggcggca
     4261 gccacgccgg aggcgacgga accgcgccca cctcggcact cgcccgcctg acgacctcga
     4321 cgagccgagg cagctcgtcc cgtgggcgtc gagcctcggg gatgctcgtc cattcgccgg
     4381 gcgcttcacc ccatcgaagc tcgcgaatcc gaacgcctgc ctcctggctg ggtgcgagca
     4441 cttgcgcagc ctgaaaggtg gtcaacgtgg cgccgccggc ccgggcgtgc ccgcgaccgg
     4501 gtgtcgtcgg gccgatgttg gccgcgtcgg cgacctcgat cacgtcttcg gagtctgaac
     4561 ggtcgcgcac ccgcagcgcg atccggaggt tgacgttggc cttgatgtcc gcggtcacga
     4621 ctccagctgg acgctgcgtg gccaggacca gatgcaggcc gagggaacgc cccagggcag
     4681 cgactctgac catcccgtgg acaaaggtgg gcagctcatc gaccagtgcg cggaactcgt
     4741 cgatgacgat cagtagccgt ggcagggatg gcccgtggcg ggaaagaccc tggtacgcac
     4801 tgaaatccga tacgccagct gacctcagga tgctttcacg gcgcctgagc tcggcgtgaa
     4861 gggaggccag ggcacgaagg gcacgatggt catcaaggtc ggtgacgagc ccggccgtgt
     4921 ggggcagtcg gccgcagtca ccgaaagccg caccgccctt gtagtccacc agcacgaacg
     4981 ccaggtcttc ggggcgattg tgtagcgcca acgcgaccac cagcgtccgc aggagctcag
     5041 acttgccggc tcccgtggta cctgcgacga ggaggtgggg gccgtcggtg gccaggtcga
     5101 gcacccaggg tccccttgcc gtcaggccga gcggaactgc cgtcgtcggc ccccttcgcc
     5161 agaggtcgac cacagcggcg ggggtcgtcg gcgaggggag gagttcatcg aggcgcacgc
     5221 tcgacgggag ccaggcgtcg ctctccgctg gtgctgcgtc acgcagcggt gcgagtccac
     5281 gactgagacg gtcggcccac cagtcaccca ccaggtcgac ggtcagctga tcgtgatcgt
     5341 ggccgggaac gttcagggtt ggcgttcctg gggtgctgag gtccaccacg gcgccgctct
     5401 cgatcggcag tgcccccgac ttgttgtcca gcgcaacggt gctgatcccg accgcctggc
     5461 ctgcggcaag cacacgggtc agcccgggga tggcacgaag gtcggccgca ccgtcgagca
     5521 ccagcagcgt tcggggccca gtccacctcg aggggccgcc gccaccgggg ctgctgttct
     5581 cctccacctc ccgcacgagg tcgtcgacga cggccttggc gcgaccgtcg tcccacgcaa
     5641 gcacggcggt gccggggtcg gtgtcgccgc ccgctgctcg cacgtgaggc actcggtcga
     5701 gccagcgcca gtcgtccccg ctgtcgtgcg cgcacagcag gacgacgcgc aggtcgatgg
     5761 gcgagtgcag gctgagcagc tgtcccacga tggagcggac cgcccccagc acggccgagc
     5821 gctcaccgcc cattcccagc acgccgacct cggcgagatg gaccacgcac ggcgctgccg
     5881 agatccctgg aggctcgcca acctcaccgt tgggtgtccg cacggtgagg aggcgagcgg
     5941 gcgacgtgca ggttccgatg gccacagcga gggcgtcagg atcgtcgcgc cgccgttccc
     6001 agagccgagc cgtaggggcg gtggcgatct cgaggatctc cgcaggatcg gggtggtcgc
     6061 gccgacgggc ggcgcgctcg cgagcgcacg cggcgccgat cgaggccagg acctcggcgc
     6121 tcgaccggtc gtgctcggcc agctcggcgg catacctgcg gcgaccctgg atgcggtcgt
     6181 tcagtaggtt gcccaccatc gccagggggg acgcgagggt gaaggccaac atggcggggc
     6241 cgagaaagta ggccatcacc acggcaatcg gaataggcag cgcaatcgcg acccagggca
     6301 cccgcgttgc agcctgtcgc tgcggatgag gtggcagggt cgcggtctgg tggggttgcg
     6361 gttgggcgac ccgagggcgc cggttgacga gctgggtacc gtcgcgtcgg gcggccgacg
     6421 ttgccggaag cccggacgtc cggcgggcca ccagttcggt gtcgccagcg gtcaccgctg
     6481 ctcccggacg ccaccgcacc tcggtggagc cgacggactg tccgtccatg cgggtgccgt
     6541 tcgtcgacgc caggtcgcgg acctgaaggc catctgcgtc gcaccggatc tcaaggtgca
     6601 cccgtgacag tgccgggtcc gccaccaggg tgtcggcttc gcgggagcga ccgacggtat
     6661 gccgccctgg cgaaagctcg agcaaccacc ccgcgtcagg tccgtgggcc acggcaacgc
     6721 cgaccgggct gacagggaga gaacgccgac ggggcgcagg tgtgggagcc gagctcgatg
     6781 gcctgcacgt gaccgacgct ccgtccacca gcggcgccac ccccagtgga gtgctgctgg
     6841 gcaacagctc gccgcgcatg aggagctcgt gatcgcccgc gcgcgagaag tgccgcgcta
     6901 ctgcggtgct cagctcgttg accgtacttc cttcgggcgc gccgaactcg agctcgtgca
     6961 ccgtcgcgtc gggcggagtc ccgggtcggc ggggcgcctc aagcagacag acggtgaggc
     7021 gaactcgcat tccacgaggt tagagaagcg atcggacagt gcctggtggc tatccacagg
     7081 tgtggacgac ttgcgcagct gtcgagaaat gtgcctagga tgcatttgcg tccgaacgac
     7141 ggggtttaga tccgttcgca tgcggtccga ggcggaccac ggggttgggg gagttccatg
     7201 atgaatgcca ttggcactgt cgaagaagag gttcgcgagc tgatccgccg cggaggtctc
     7261 gaccctgcgc gtgatggacg gcagctggac cggctggtcc gcgacgctgt gacggactac
     7321 gacgaacgat ctctgcacgg gggacttcct acgatcgcag atctcgaagg tgcggtgaag
     7381 gcggtcgtgg atgccgtcgc cggtttcggc ccgttgcagc cgtacttcga cgacccggag
     7441 atcgaggaga tctggatcaa cgagccgtcc aaggtgtttg tcgcccgccg tggtgtcgct
     7501 gagctgacaa ccacgatgct gacctcagac gacgtgcggg atctcgtcga aaggatgctc
     7561 aagacgagcg gccgccgggt cgacttgtcc agtcccttcg tggatgccgt tctcccggac
     7621 ggttcgcggc tccacgtggt catcccggac atcacccggg cgcactgggt ggtgaacatc
     7681 cgcaagttcg tcgtgcgtgc cgcgcacctt gacgaccttg tcgccctggg taccgtgact
     7741 cggcaggcgg cggcctttct caacgcggcg gtggccgccg gcctcaacat ccttgtggcc
     7801 ggcggtaccc aggcgggcaa cccaacaagt ggttaatgca cccatctccg catccacacg
     7861 agccccgtcc ccgatacagg ccaagtcggg tcgggcatgt gtgggtcaag ggtggccgaa
     7921 ggccatcacg aagtgacgcg gagcgccctt tacgctcgcg tgctcggccc catcatccgc
     7981 aactaggggg cggggcgtcg gacaggcccg gactctcaga atttgcccga tctcggggtc
     8041 gactctgcga tgatcctcga accccagtcc gcatggatgg agcttgaatg atcgacgtgg
     8101 gagcagcggc cgccatcaat gcgaccatct cgtctatcgt gctcgcggcc ctttcgctat
     8161 gggcgtccgc cgtcgtcggc gaactagcat cccagaagcg ccgcattctg gagagtgccg
     8221 acaaggtcaa ccaacttccc gataccggaa gcatgggcgc tcaagcgtta gccaacgatc
     8281 cggagtccat tcgtcagtcc gtcaaagact tcgtgatgtt gggcatggga gtcgggcccc
     8341 acgccttcga ctcagcggac gacaatcgtg ggcagcgctt catgagcctg atgacctcgc
     8401 tggccgccca ctatcccttt cgtcgcacca tgcgaccctc cgaggaggga ggcgtggtca
     8461 tcggcggcgc gcccgagctc gtggagttca aaagcattga cgacgtcacg aggtgggtcc
     8521 aagacgccga gtcgctgact ggccaggtcg agtggctgtt cagcgctcat cgcggaaaag
     8581 tcggcgagct gatctcggct gcggatgcag cttttcggcc tctcggtccg gacctagacc
     8641 gtcttggcca gcatctctcc ccgggggcct tgtcagacat cgctcagtac ttcgtcgaca
     8701 atcctcgagt ggcagcctcg ttgactgatg cattcctctt gaaggtgggc ggcctctccg
     8761 cgattgcggt cgagacgcgg ggctatctcc aaataaggca agcctatttg gggcggaccc
     8821 aatggcgcag gtggctcctg attggggctg ggctcagcgt ggtctcattg ttcactgggg
     8881 cggtaatccc gatgctgttt ccacacgtat cggggattgt ttacctgtgg gtgccgggtt
     8941 tgatctacct cgcatcgggg ctgatggggc tcggagcctt ggctcgagcg ctcgcttcgg
     9001 actaggtggc cagcctccgg agctcctcgc gggcggcatg tgtagggagc ggaatccggg
     9061 atcgggccgg ggtgcggtgg ggtgcgcgtg gcgcgaagcg cctaagcgcg gggccccatc
     9121 gcggggcctt ggcctggcgg cggcggagcc gccgttcttc acttgaagta gcaacgaaac
     9181 tcggggacgt cctcgatcgc gatctccagc gactgggctt tactgggcgt ccgtcttcga
     9241 agcgtccccg tgcgccggag ggcgtctggt cacgtcggtc agttggtcca gcaggcgatg
     9301 cgtgcggtga acccgtcggc ggtggtggag aagtccaggg agtcggagaa gtttcgggcg
     9361 agccacaggc cggcgccgtg tacgggcagg ccgttgagtg gtgctggcag gaatccggcg
     9421 agcgggtcgt cgaacccgct gccgtggtcg gtgatcgtgc ataccaggcg ttgctgggtg
     9481 acccaggcgc ggacgctgac ctggcctgtg ccgtggacga gggcgttgga ggcgatctcg
     9541 ctgatcgcct ccaggaagtc gtcgatctga tcttgtggca gtaccgagcc ggctgtggct
     9601 tcgttgtgga tcgtcctgcg gagcgtgctg agtccgaccg cgtgcaggtc gtgcaactcc
     9661 aggctcggtg gctgcgcttc gatcgtgtag ggcccgatct ggctgtggcg gcgcagcagc
     9721 tcgacgggcg gcaggtagtc ggggttgggg cgccgatg
//
LOCUS       DASYFY010000156         2120 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1745179, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000156 DASYFY010000000
VERSION     DASYFY010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1745179"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(132..668)
                     /locus_tag="VGN19_02915"
     CDS             complement(132..668)
                     /locus_tag="VGN19_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194867.1"
                     /translation="MAGRLKPYFVETRVTGSDQLAATLWQVSGPWTPEDARTALEQYK
                     LYVEMADRVSARRSLANTFFLTLNTAVFTLIGVLWKDPPRASAWLGLFPTVVLVIQCF
                     VWFWIIRSYRQLSSGKWAVVGALEQRLPAAPSSAEWAALGRGQDPALYWPLTHVEQWV
                     PPLFALAYVAGFVALALA"
     gene            786..>2120
                     /locus_tag="VGN19_02920"
     CDS             786..>2120
                     /locus_tag="VGN19_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEV7194868.1"
                     /translation="MRLLGLNRSIGRRLAAAFGLVCALTAVLAATGVWGQQVQAANRQ
                     ESTRAQAMRDQINDLRYLDADVSGWQAYLWMHAQVEGGAKATDPSGETVTGIMADKAD
                     GSQVIADLAKLPLNAAEKDTLQKISDLWDQYFTSTDKMIGLLRDGSPAGRASAYDMLS
                     TGDLDSQWSDLLAQTEKLDKYADAKVHAVDRKAATDAGRVRLLVIISAALAVALSAVA
                     GLFVSRSIVRPIARVKDVLTAMAGGDLTARAEVAGRDEVAQMAVALNEAQESVRAVVA
                     GVASSALAVSASSVQLSSSGEAVTAGAEEASVQAGVVAAAAEQVSRNVQTVAAGSEEM
                     GSSIREIAVSANEAARVASSAVQVVESTNGSVAALGASSTEIGNVVKVITSIAEQTNL
                     LALNATIEAARAGEAGKGFAVVAGEVKELARETARATEDIVRRVEAIQVDTQG"
BASE COUNT          335 a          686 c          798 g          301 t
ORIGIN      
        1 agccatcgct actgcggttc agctcatccg ggacgtgcgg gccgggcagc tcgagccgcc
       61 gacgctggcc ggtcggccgc tcatcgagcc gttcgcctga ctgagaagcg caggggggcg
      121 ccgcactggc tctacgcgag cgcgagggcc acaaaccctg cgacgtacgc gagggcgaag
      181 agcgggggca cccactgctc cacgtgggtg agcggccagt agagggccgg gtcctgtcct
      241 cggcccaggg ccgcccactc ggcggacgag ggcgcagccg gtagccgctg ctccagcgcg
      301 ccgacgacgg cccacttgcc agagctgagc tgccggtagg agcggatgat ccagaaccac
      361 acgaagcact ggatgaccag gacaaccgtg gggaacaggc ccaaccacgc cgaagcccgc
      421 ggtgggtcct tccacaggac gccgatgagc gtgaacacgg cagtgttcaa cgtcaggaag
      481 aacgtgttgg ccagggaccg ccgcgcgcta acccggtcgg ccatctcgac atagagcttg
      541 tactgctcca gcgcggtgcg cgcgtcctcc ggggtccatg gcccgctgac ctgccagagc
      601 gtcgccgcga gctggtcgct gcccgtgacc ctggtctcga cgaagtaggg cttcagtcgt
      661 ccggccatgg ctcacctcgc ggtcaatata gttccgctgc gggggcggag tcctcagatg
      721 tcggtcgcgt cgttcgatgg gggaggtgga tccatcacct gcttctcgaa cgaggttgcc
      781 cactcatgcg tctgctcggt ctcaaccgtt ccatcggccg ccggctcgct gccgccttcg
      841 ggctggtctg cgccctcacc gctgtcctcg ctgccaccgg cgtgtggggc cagcaggtcc
      901 aggcggccaa ccgtcaggag tcgacgcggg cgcaggccat gcgcgaccag atcaacgacc
      961 tgcgctacct cgacgccgac gtgagcgggt ggcaggccta cctgtggatg cacgcccagg
     1021 tcgagggcgg ggccaaggcc accgacccga gcggcgagac cgtcaccggg atcatggccg
     1081 acaaggccga cggctcgcag gtcatcgcgg atctggccaa gctgccgctg aacgcggccg
     1141 agaaggacac gctgcagaag atcagcgacc tgtgggacca gtacttcacg tccacggaca
     1201 agatgatcgg gctgctgcgc gacggcagcc cggccggccg ggcgtcggcc tacgacatgc
     1261 tcagcacggg tgacctcgac tcgcagtggt cggacctgct ggcccagacg gagaagctcg
     1321 acaagtacgc cgacgcgaag gtccacgcgg tggaccggaa ggccgcgacc gacgccgggc
     1381 gcgtgcgtct gctggtgatc atctccgccg ccctcgccgt cgccctgtcc gcggtggcag
     1441 gcctgttcgt gagccggtcc atcgtgcgcc cgatcgcaag ggtgaaggac gtgctcaccg
     1501 ctatggccgg aggcgacctg accgcacgcg ctgaggtggc cggccgggac gaggtcgcgc
     1561 agatggcagt ggcgttgaac gaggcgcagg agtcggtgcg tgccgtggtg gcgggggtgg
     1621 cgtcgtccgc actggcggtc tcggcctcgt cggtgcagct gtcgtcgtcg ggtgaggctg
     1681 tgaccgccgg tgcggaggag gcgtcggtgc aggccggcgt cgtggcggcc gctgccgagc
     1741 aggtgtcgcg gaacgtgcag acggtcgcgg cggggtcgga ggagatgggc tcctcgatcc
     1801 gggagatcgc ggtgagcgcg aacgaggcgg cgcgcgtggc gtcctccgca gtgcaggtgg
     1861 tggagtcgac gaacgggtcc gtggcggccc tgggcgcctc gagcacggag atcgggaacg
     1921 tcgtcaaggt gatcacctcc atcgcggagc agacgaacct gttggcgctg aacgcgacga
     1981 tcgaagccgc tcgggcgggg gaggccggca agggtttcgc cgtggtggcg ggcgaggtca
     2041 aggagctggc tcgagagacg gcgcgagcga ccgaggacat cgttcggcgg gtcgaggcca
     2101 tccaggtcga cacgcagggc
//
LOCUS       DASYFY010000157        10971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_957396, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000157 DASYFY010000000
VERSION     DASYFY010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 10971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10971
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_957396"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VGN19_02925"
     CDS             complement(<1..228)
                     /locus_tag="VGN19_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF664 domain-containing protein"
                     /protein_id="HEV7194869.1"
                     /translation="MTSKATQFPDMWVDPENDPREGPSPVGERETPLGYLDYQRRTLE
                     LKCDGLDAEQLARRSVEPSTLSLLGLVRHLAK"
     gene            complement(276..1835)
                     /locus_tag="VGN19_02930"
     CDS             complement(276..1835)
                     /locus_tag="VGN19_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEV7194870.1"
                     /translation="MTASTSATAPVTYPDKIDAAVLKIAGVVVLGAIMSILDITVVNV
                     ALPTFQQVFAADPAKPLAYSMVAWTVTAYTLALATVIPLTGWAADRFGTKRLYMLAIV
                     LFTAGSALCSAATSINMLITFRVLQGLGGGMLMPLGMTIMTRAAGPARMGRLMAILGV
                     PMLLGPIGGPILGGWLIEHYSWHWIFLINLPLGVIAVTYAYFALPRDHTEPSESLDLL
                     GVALMSPGLALFLFGISSIPEKGTMNDPKVYVNMFIGLALMVTFVFHSFRPRHPLLDL
                     RLFRNRNLTVSVLTMFLFAAAFFGGLLLVPTYFQSVRGESTLNAGLLVAPQGLGAMLT
                     MPIAGALVDRIPVGRIVPFGLLLISGGMFSLTQLTSTTSYSTIIVILFIMGLGMGGTM
                     MPIFTTALKTLTSHEVARGSTLLNITQQIASSVGVAIMSVLLTNHFKETKLALPAMAS
                     HHDPSIIAKIGGSAAVNQGLADAAEAFAKTYWVAATLVLLTLVPAYFLPRRREVTHLL
                     DDQLAPPVVVH"
     gene            complement(1947..2417)
                     /locus_tag="VGN19_02935"
     CDS             complement(1947..2417)
                     /locus_tag="VGN19_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019179045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7194871.1"
                     /translation="MPRTYPCLWFDGKAQEAAEYYISVFPNSTITTVAHYPEGSGEHA
                     GEVLTVAFQLDGTPYVALNGGPQFTLDEAISLTIDCKDQAEIDHYWDALTADGGQEGP
                     CGWLKDRFGLSWQVVPENWDEIASGDPDRAAKVFAAMMTMKKLDIASLEAAGAR"
     gene            2518..3405
                     /locus_tag="VGN19_02940"
     CDS             2518..3405
                     /locus_tag="VGN19_02940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194872.1"
                     /translation="MPDLPPTLAEAMQTLYAAGPEEFMAVRRELVAGARAAGDRDLAT
                     ELGALRKPSVAAWAINLVARVTPGVLADLVGLGERMRDAQGRLDTATLTALRPERDQT
                     VRLGVEAAVATAQSAGRGLGPGAREEVRATLVAALADEGASIAVASGQLTRALSYSGF
                     GEVDLSDAVVRTASGAILTVLSGSGSGLRGGTGDGRETGRARGDPEVPDRDHLARALA
                     EAETRLAQAEKAVHEARTRAEETRERLEVVERQLAKAREADERALEAVTDAVRARKQA
                     AQARHAAHQALVAGQGDDA"
     gene            complement(3447..5690)
                     /locus_tag="VGN19_02945"
     CDS             complement(3447..5690)
                     /locus_tag="VGN19_02945"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009081419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEV7194873.1"
                     /translation="MTCASCATRVEKKLNKLEGVVATVNYAAGKAKVSYGPGLTPADL
                     VETVHRTGYTASVARDPFEKVERDEDDEAANRGSDADSDADSEVTAVLRQRLVIAALL
                     SAPVVLLAMVPALEFRNWQWASLMLAAPVVVWGGLPFHRAAWLNLRHGQTTMDTLISM
                     GTLAAFGWSLYALFFGTAGDPGMTHAFAFELQRTGGADAIYLEAATGVTTFLLAGRYA
                     EARAKRRAGAALRALMELGAKEVTVLRGEGAHALEELVPVDDLEVGMRFVVRPGEKIA
                     TDGVVVQGTSAVDAALLTGESVPVEVRPGDHVVGATINVGGRLAVRATRVGSDTQLAQ
                     MARLVEDAQNGKAAVQRLADRVSGVFVPIVIALALATLVTWLVVGGGWTAAFTAAVAV
                     LIVACPCALGLATPTALMVGTGRGAQLGILIRGPEVLESTRRIDTVLLDKTGTVTTGE
                     MALTQVVAAPGQDEATVLRFAGALEGASEHPVARAIASAARLVDRLPGVEEFRSIEGL
                     GVEGTVEGHQVVVGRPSLVATRTTGHPPELDHAVRAAQQRGATAVVVGWDGAARGVVA
                     VADAVKASSAEAVRQLRDLGLTPILLTGDNHSAAAEVARQVGIEEVIADVLPSDKVEV
                     VKRLQAQGKTVAMVGDGVNDAAALAQADLGLAMGTGSDVAIQASDLTLVRGDLRSVPE
                     AIRLARRTLGIIRGNLFWAFAYNVAAIPLAALGLLSPMIAGGAMALSSVFVVTNSLRL
                     RGFRPSP"
     gene            complement(5750..5968)
                     /locus_tag="VGN19_02950"
     CDS             complement(5750..5968)
                     /locus_tag="VGN19_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017825000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEV7194874.1"
                     /translation="MTTQTFDVLGLTCAHCASAVTEELQALEGVSTVQVVLTPGGISV
                     VQVEADHVLTPAEVSTALVEAGDYSLAP"
     gene            complement(5995..6288)
                     /locus_tag="VGN19_02955"
     CDS             complement(5995..6288)
                     /locus_tag="VGN19_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEV7194875.1"
                     /translation="MDETHYGYHDDKDSHLKRLRRIEGQIRGLQRMVEGDKYCIDILT
                     QVSAATKALQSFSLELLEDHLEHCVVDAARRGGPEAQDKVREASDAIARLVRS"
     gene            complement(6471..7739)
                     /locus_tag="VGN19_02960"
     CDS             complement(6471..7739)
                     /locus_tag="VGN19_02960"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7194876.1"
                     /translation="MAPITAAGLPVPQRVAVVGAGMVGLSTAWFLQEHGVEVTVLDRE
                     GVAAGSSWGNAGWLTPGIATPLPEPAVLKYGLRAVLSPSSPVYVPPSADPKFLKFVTG
                     FTRHSTMKAWKKAMGALVPINDQSLESFDLLQAGGVQGQTIEAKSFLASYRTEAERVT
                     LLEEIEHIHAAGQAIEFEALTGDQARAIEPSLSDEIGAAILLKGQRFVNPGAYVHALA
                     DAVRARGGKILDSATVSDIRDTGTGVVVTTREGSVEEFDAAVLATGAWLGALARRFGV
                     TNVVQAGRGYSFSVEIDHVPNGPVYFPAQRVACTPIGDRLRVAGMMEFRKPEAALDPR
                     RIQAIAEAARPLLRGADLDNRQDEWVGSRPCTVDGLPLIGATKSPRVYAAGGHGMWGI
                     TLGPVTGRLLAETMVTGKSVEALAPFNPLR"
     gene            7842..9368
                     /locus_tag="VGN19_02965"
     CDS             7842..9368
                     /locus_tag="VGN19_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7194877.1"
                     /translation="MLLVTALVDTLGGLLTLGVPAEGASVDDLTIAEPLQGIVGQRDD
                     LVLGVAVETIEAAAELVTASAAKGAAAIVLRRGLARRRAVRDRARAEGIALVELAEQA
                     SWAHLVWLLRGVIDRAAAGQSRRDGTPVQDDLFALADAAAALVDAPVTIEDAQSRVLA
                     YSSRQDLTDPARVSTIVGRRVPDEVLATLRAQGVFRRLARSAEPVFVPASGGTKPRLV
                     VPVRAGGEWLGSIWAVVAERPPATVVAELVQTSSVVALHLLRLRAQADLTRRVAADRL
                     RTVLSGNARGADDWLPRPPWRVVILGGLGEPGRLLDLWESVSRRHAWNQPLLAELDGR
                     VYAVVRDSSDASPGTWEWLQAVVAEVRREGLELTARAGRTASAATELEHSRSQAQETD
                     RVAAPDNPVAAHEALWAEVTIARAAAALSEDASGPLAVLHEHDEQHGSDYLQTLAAWL
                     DHPGAPAQAARSIHVHPNTMRYRMTRLADLAGLDLDNATVRLAVRLQLAASLAQGATS
                     "
     gene            9555..10637
                     /locus_tag="VGN19_02970"
     CDS             9555..10637
                     /locus_tag="VGN19_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEV7194878.1"
                     /translation="MTSGRPSGPTIYSVAELAGVSIASVSRVLQGSTTVSEGTRARVL
                     RAADELRYVPLSAARSLAVRHHEAHGLVLPELSGPYYSELLLGFESRAADLGQSVVLM
                     LAEGKPDLAKSVRLLATRVDGIAMLGSAAIPAATVTALHGTKPVVLIAGSALPDVDAV
                     TAENAVSAKALTAHLLGHGRTSLLFVGDPEAGPDIRDRYAGFVAAHRSRRRKAAAPIR
                     VGLRESAGIAVAECLLAGDAVADGLVCANDELALSIMKRLREGGWNVPADLAVVGWDD
                     VMTARYVEPGLTTVRQPVRELGAMAADRLHARITGAVTGFGTEVIPTHLVIRSSCGCP
                     PPPATGPRTPPPRHTKKSTQRKRESR"
     gene            10634..>10971
                     /locus_tag="VGN19_02975"
     CDS             10634..>10971
                     /locus_tag="VGN19_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEV7194879.1"
                     /translation="MRRTPVLAVATVAATALALTACGRGSTNATSNDTAKSISSGKAT
                     GAITVWAMGAEGDKLPDLAKQFEAANPGVKVNVTAIPWDAAHDKFTTAITAGSTPDAA
                     MVGTTWMGEFA"
BASE COUNT         1731 a         3706 c         3873 g         1661 t
ORIGIN      
        1 cttggcgaga tgacgcacca gccccaagag cgacaacgtg gacggctcga ctgaccggcg
       61 cgcgagctgc tcggcgtcga ggccgtcgca cttcagctcc agggtcctgc gctggtagtc
      121 caggtagccc agcggcgtct cgcgttctcc cactgggctt ggaccctcgc gcgggtcgtt
      181 ctcggggtcg acccacatgt cggggaactg agtggccttc gatgtcatgg ctcgatcatg
      241 gcgcacccgc agggccgtgc acgaccggat tacggtcagt gcacgaccac cggcggggcc
      301 agctggtcat cgaggaggtg ggtgacctca cgccggcgcg ggaggaagta cgccggcacc
      361 agggtgagca ggaccagcgt cgcggccacc cagtaggtct tcgcgaaggc ctcggcggca
      421 tccgccagac cctggttcac cgccgcggac ccgccgatct tggcgatgat cgaaggatcg
      481 tggtgcgagg ccatggccgg aagggcgagc ttggtctctt tgaagtggtt ggtcaacaac
      541 accgacatga tcgccacgcc aaccgagctc gcgatctgct gggtgatgtt cagaagggtg
      601 gagccacgcg ccacctcgtg gctggtcaac gtcttcagcg cggtcgtgaa gatcggcatc
      661 atcgtgccgc ccattcccag gcccatgatg aacaggatca cgatgatcgt gctgtacgag
      721 gtggtcgagg tgagctgggt cagggagaac atgccgccac tgatgaggag gagcccgaag
      781 ggcacgatgc gtccgaccgg gatcctgtcg accagcgcgc cggcgatggg catcgtcagc
      841 atcgcgccga gaccctgcgg tgcgacgagc agccccgcgt tcagggtgga ttcgccgcgc
      901 actgactgga agtacgtcgg caccagcagc agaccgccga agaaggccgc ggcgaacagg
      961 aacatggtca gcaccgacac cgtgaggttg cggttgcgga acagacgaag gtccagcagg
     1021 gggtgccggg gcctgaagga gtggaagacg aacgtcacca tcaacgccag gccgatgaac
     1081 atgttcacgt agaccttggg gtcgttcatg gtgcccttct ccgggatcga ggagatcccg
     1141 aagaggaaga gcgccagccc tggggacatc agggccacgc caaggaggtc gagcgactcg
     1201 gacggctcgg tgtggtcccg aggcagggca aagtacgcat aggtgacggc gatgacgccc
     1261 aggggcaagt tgatgaggaa gatccagtgc cacgagtagt gctcgatcag ccagccgccg
     1321 aggatgggac cgccgatagg tcccagcagc atgggcacgc cgaggatggc catcagccga
     1381 cccatgcggg caggaccggc agcccgggtc atgatcgtca tgccaagcgg catgagcatc
     1441 cccccgccga ggccctgcag gacccggaac gtgatgagca tgttgatcga cgtggctgcg
     1501 gagcacagcg cggagccggc ggtgaacagg acgatcgcga gcatgtacag gcgcttggtg
     1561 ccgaaccggt cggcggccca gcccgtcagc ggaatgaccg tcgccagcgc caaggtgtac
     1621 gcggtgaccg tccaggcgac catcgagtag gcgaggggct tggcgggatc agcggcgaag
     1681 acctgctgga acgtgggaag ggccacgttg acgaccgtga tgtccaggat cgacatgatc
     1741 gcgccgagca cgaccacacc ggcgatcttg aggaccgcgg cgtcgatctt gtcggggtac
     1801 gtcacaggag ccgtggcaga tgtggatgca gtcacaggaa cctccgatgg gtcaattcgg
     1861 acgcgccccc aagacgtgtc ccggcgttgc agaaaaggct aaccctgtgc actgacagac
     1921 ggctcaacct tttccaacgg tgcaggtcag cgggctcccg ctgcctcgag agaagcgatg
     1981 tcgagcttct tcatcgtcat catggcggcg aaaaccttgg cggcgcggtc gggatctcct
     2041 gacgcgatct cgtcccagtt ctcggggacg acctgccagg acaggccgaa cctgtccttg
     2101 agccaaccac acggaccctc ctggccgccg tcagcggtca gtgcgtccca gtagtggtcg
     2161 atctcggcct ggtccttgca gtcgatcgtg agcgagatgg cctcgtctaa cgtgaactgg
     2221 ggcccgccgt tgagggcgac gtacggggtt ccgtcgagct ggaacgcgac tgtgagtacc
     2281 tctccggcgt gctccccgga tccttccggg taatgcgcga cggtggtgat cgtggagttg
     2341 ggaaacaccg agatgtagta ctcggcggct tcctgggcct tcccgtcgaa ccacaggcag
     2401 gggtaggtgc gcggcatcgt cgtctccttc cgacgtcggg cgttcgcccg gcatacgtcc
     2461 actgagactc ccgccgagcc cggaactcat cgctggccat gccgtagcgt ctggtccgtg
     2521 ccggacctgc cccccacgct cgccgaagca atgcagacgc tgtatgccgc ggggccggag
     2581 gagttcatgg cggtccgccg cgagctcgtg gccggagcgc gtgccgccgg ggatcgcgac
     2641 ctggccaccg agctcggcgc cctgcgcaaa cccagcgtcg cggcctgggc gatcaacctg
     2701 gtcgcgcggg tgacacctgg cgtgctggcg gacctggtcg gactgggcga acgcatgcgg
     2761 gatgcccagg gacgcctcga cacggcgacc ctcactgcgc tgcgacccga acgagaccaa
     2821 accgtccgcc tgggcgttga ggcagcggtt gccacggcgc agtcggccgg acgaggtctc
     2881 ggtccgggcg cccgcgagga ggttcgggcc accctcgtcg ccgcgctcgc agacgagggc
     2941 gccagtatcg ccgtggcgtc ggggcagctg acgcgcgccc tgtcctacag cggtttcggt
     3001 gaggtcgacc tttcggacgc cgtcgtccgc accgcctcag gcgccatcct cacggtcctg
     3061 tcgggctcgg ggtcggggtt gcggggcgga acaggggacg gacgcgagac cggccgggcg
     3121 cggggagatc ctgaggtgcc cgaccgcgac cacctggcgc gagctctcgc tgaagcggag
     3181 acacgtttgg cgcaggccga gaaggcggtc cacgaggcgc ggacccgggc ggaggaaacc
     3241 cgcgagcgcc tcgaggtggt cgagcgacag ttggcgaagg ctcgcgaggc cgacgagcgc
     3301 gccctggagg cagtgaccga cgcggtgcga gcgcgcaagc aggcggccca ggctcggcat
     3361 gcggcccacc aggcgttggt cgcaggccag ggggacgacg cctaggacgg ggtggtccca
     3421 cccgaaccac gcctgtcgtc ggggagtcat ggcgacggcc gaaatcctct gagccgcagg
     3481 ctgttggtga ccacgaagac ggacgacagt gccatggccc cgccggcgat catcgggctg
     3541 agcagaccga gggcggccag ggggatggcg gcgacgttgt acgcgaaggc ccagaacagg
     3601 tttccccgga tgatgcccag ggtccggcgg gccagccgga tcgcctcggg gaccgagcgt
     3661 aagtcgccac gcaccagggt gaggtcgctc gcctggatcg cgacgtcgct tcccgtgccc
     3721 atggccagcc ccaggtcggc ctgggccagg gcagcggcat cgttgacgcc gtcgccgacc
     3781 atcgccacgg tcttgccttg cgcctgaagg cgtttcacga cctcgacctt gtcgctgggc
     3841 agcacgtcgg cgatgacctc ctcgatcccc acctgccggg cgacctcggc ggccgcggag
     3901 tggttgtcac cggtgagcag gatcggggtg aggccgaggt cgcgcagctg ccgcacggcc
     3961 tcggcggagc tggccttcac ggcgtccgcc acggcgacga ctccgcgggc ggccccgtcc
     4021 cagccgacga cgacggcggt ggcgccgcgc tgttgggccg cgcggacggc gtgatcgagc
     4081 tccggcgggt gccctgtcgt ccgggtcgcg accaggctcg gacgacccac gacgacctga
     4141 tggccctcga ccgtgccttc aacgccgagc ccttcgatgc ttcggaactc ttcgaccccg
     4201 ggaagccggt cgaccaggcg cgcggccgac gcgatggctc gcgcgacggg atgttcggac
     4261 gccccctcga gggcaccggc aaaccgcaga acggtggctt cgtcctgacc cggggccgcg
     4321 acgacctgcg tcagcgccat ttcgccggtg gtcaccgttc cggtcttgtc cagcaggacg
     4381 gtgtcgatcc tgcgcgttga ctccaacacc tctggccctc tgatgagaat gcccagttgc
     4441 gccccccggc cagtgcccac catcaacgcc gtcggggtgg ccaagcccag cgcgcaggga
     4501 cacgcgacga tcaacaccgc cacggcggcg gtgaaggccg cggtccagcc cccgcccacg
     4561 accagccagg tcaccagcgt cgcgagagcg agtgcgatga cgatggggac gaacaccccg
     4621 gagacgcggt cggcgaggcg ctggacagca gccttgccgt tctgtgcgtc ctcgacgagg
     4681 cgggccatct gagcgagctg ggtatccgaa ccaacccggg tggcgcgcac ggccaggcga
     4741 ccaccgacgt tgatcgtggc cccgacgacg tgatctccgg gtcggacttc gacgggcacg
     4801 gactcgccag tcagcagcgc ggcatcaacg gcactggtcc cctgtacgac gacgccgtcg
     4861 gtggcgatct tctccccagg ccggaccacg aacctcatcc cgacctcgag gtcgtcgacc
     4921 gggaccagct cctccagggc gtgcgcccct tcgccacgca ggaccgtgac ctctttcgcg
     4981 cccagttcca tgagcgccct cagcgccgcc cccgcgcgcc gcttggcccg cgcctcggca
     5041 tacctgcccg caagcaggaa ggtggtgacg cctgtggcgg cttcgaggta gatggcgtcg
     5101 gcgccaccgg tccgctggag ctcgaaggcg aatgcgtgcg tcatgccagg gtcgcccgcc
     5161 gtgccgaaga acagggcgta gagggaccag ccgaaggctg ccaaagtgcc catggagatc
     5221 aaggtgtcca tggtggtttg cccgtgccgc aggttgagcc aggcggcgcg gtggaacggc
     5281 aggccgcccc agacgacgac cggcgccgcc aacatcaacg aggcccactg ccagttgcgg
     5341 aactccaggg ccggcaccat cgccaacagg acgaccggtg cgctcaacag ggcagcaatg
     5401 acgagccgct ggcgcaggac tgccgttacc tcggagtctg cgtcggagtc tgcgtcggac
     5461 cctcgatttg cagcctcgtc gtcctcgtca cgctccacct tctcgaacgg gtcccgggcc
     5521 accgaggccg tatagccggt gcggtgaacc gtctccacca ggtccgccgg ggtcagccca
     5581 ggtccatagc tgaccttcgc cttcccggct gcgtagttga ccgtcgccac caccccctcg
     5641 agcttgttga gcttcttctc aacccgcgtc gcgcaggagg cgcacgtcat tccgccgatc
     5701 acgagctcga cttcgccaac ccgggcgtcg tcgcggggtg actgggggct cacggcgcga
     5761 ggctgtagtc gcccgcctcg acgagcgcgg tgctcacttc agccggggtg agcacatggt
     5821 cggcctccac ctgaacgacg gagatcccgc cgggcgtgag gacgacctgc acggtgctga
     5881 cgccttcaag cgcctggagc tcctcggtca cggcactcgc gcagtgcgcg caggtcaggc
     5941 cgaggacatc gaaggtctgg gtggtcatgt gctctcctgg gatgggtggg ggagtcagga
     6001 acggacgagc ctggcgatcg cgtcggacgc ctcgcgcacc ttgtcctgcg cttccggtcc
     6061 gccacgccgt gcggcatcga ccacacagtg ctcgaggtgg tcctcgagca gctcgaggga
     6121 gaaggactgc agtgccttcg tagctgctga gacctgggtc aggatgtcga tgcagtactt
     6181 gtcgccctcg accatgcgct gcagacccct gatctgcccc tcgatccgac gaagccgttt
     6241 gaggtggctg tccttgtcgt cgtggtaccc gtagtgcgtc tcgtccatca gtgcgtctcg
     6301 tccatgacca tgacgacacc atacccccct atggtatttc ttcaaacccc tcggggtgac
     6361 tgcttcggcc ctgtgcccag agtctccgtg cgcccaaaag aagcgacccg cttcgcagag
     6421 agctgttctc tgcgaagcgg gtcggtgcaa cgcgcaatga gcgccggcag tcagcgcagc
     6481 gggttgaagg gcgcgagcgc ctcgaccgac ttgccggtca ccatggtttc ggcgaggagc
     6541 cgaccggtga ccgggccaag ggtgatgccc cacatgccat ggccgcccgc ggcgtacacc
     6601 cgcggggact tggtggcccc gatgaggggc agaccgtcga cggtgcaggg acgggagccg
     6661 acccattcgt cctgacggtt gtcgaggtcc gcgccgcgca gcagtggccg agcggcctcg
     6721 gcgatggcct ggatgcgccg ggggtccagg gcggcctccg gcttgcggaa ctccatcatc
     6781 ccggcgacgc gaaggcggtc gccgatcggc gtgcaggcga cccgctgagc cgggaagtac
     6841 accgggccgt tcggtacgtg gtcgatctcg accgagaacg agtacccgcg gccggcctgg
     6901 acgacgttcg tcacgccgaa ccggcgggcc agtgcgccga gccaggcgcc agtggcaagg
     6961 acggccgcat cgaactcttc gaccgagccc tcgcgggtgg tgacgacgac gccggtgccg
     7021 gtgtcacgaa tgtcggacac cgtggcggag tcgaggatct tgcccccgcg agcgcgcacg
     7081 gcgtcggcca gggcgtggac gtaggcaccc gggttcacga agcgctgtcc cttgagcagg
     7141 atggcggcgc cgatctcgtc ggacaggctg ggctcgatcg cccgggcctg gtcaccggtc
     7201 agggcctcga actcgatggc ctgaccggcg gcgtggatgt gctcaatctc ctctaggagg
     7261 gtgacccgct cggcctcggt gcggtaggag gcgaggaagc tcttggcctc gatcgtctgt
     7321 ccctggacgc caccggcctg caggaggtcg aagctctcca gcgactggtc gttgatgggc
     7381 acgagtgcgc ccatcgcctt cttccaggcc ttcatcgtcg agtggcgagt gaagccggtg
     7441 acgaacttga ggaacttggg gtcggcgctg ggcggcacgt acaccggtga ggacggcgac
     7501 agcacggcgc gcaggccgta cttgagcaca gcaggctcgg gaaggggggt cgcgatgccc
     7561 ggcgtgagcc agccggcgtt gccccaggac gatccggcgg cgacgccctc gcggtcgagc
     7621 acagtcacct cgaccccgtg ctcctgaagg aaccaggcgg tggacaggcc caccatgccg
     7681 gcgccgacga cggcgacgcg ttgggggacc gggagaccag cagcggtgat gggagccatg
     7741 gatcgagcgt gacaccgccg cggcagccgc gccttgtcct taacgcatga agaacctcgg
     7801 agatcttgtg cttgcaggac aactgcaggc atgctggcgg catgcttctg gtgaccgctc
     7861 tggtggatac cctcggcggc ctgctgacgc tgggcgtgcc ggccgagggg gcctccgtcg
     7921 acgacctcac cattgccgag ccgctccagg gcatcgtggg gcagcgcgac gacctggtcc
     7981 tcggcgttgc ggtcgagacg atcgaggcag ctgcggagct ggtgacggct tcggccgcga
     8041 agggcgcggc ggccatcgtg ctgcgtcgtg ggttggctcg gcgccgagcc gtccgcgatc
     8101 gggctcgcgc ggagggcatc gccctggtcg agctggccga acaggcgtcc tgggcgcatc
     8161 tcgtctggct gctccgtggg gtgatcgacc gtgccgccgc gggtcagagc cgccgcgacg
     8221 gcacgcccgt gcaggacgat ctcttcgccc tggcagatgc cgcggctgcg ctcgtggacg
     8281 ccccggtcac catcgaggac gcccagtcgc gggtcctggc gtactcctcc cgccaggacc
     8341 tgaccgaccc ggcccgagtc tcgacgatcg tcgggcggcg agtgccggac gaggtgttgg
     8401 cgaccttgcg agctcagggg gtgttccgcc gcctggcgcg ctcggccgag ccggtgttcg
     8461 tgccggcttc gggcggcacc aaaccacggt tggtggtccc ggtgcgggcc ggtggcgagt
     8521 ggctggggtc catctgggcc gtggtggccg agcgtccgcc cgcgactgtg gtggctgagc
     8581 tggtccagac ctcctcggtc gtcgccctgc acctgctgcg cctgcgggca caggcagatt
     8641 tgacccgacg ggtggccgcc gaccgcctgc ggaccgtgct gtccgggaac gcccggggcg
     8701 ccgacgactg gctgccccgt ccgccgtggc gggtggtcat cctaggcggc ctcggggagc
     8761 cgggtcgcct tctcgacctg tgggagtccg tgtcccgccg gcatgcctgg aaccagccgc
     8821 ttctcgccga gctcgatggc cgggtgtatg ccgtggtgcg agatagctct gacgcctcgc
     8881 ccgggacgtg ggagtggctc caagccgtcg tggccgaggt gcggcgtgag ggcttggagc
     8941 tgaccgcgcg agctgggcgt acggcatccg ccgcaaccga gctggagcac tcacggtcgc
     9001 aggcccagga gaccgaccgc gtggctgccc cggacaaccc ggtcgccgct cacgaggcac
     9061 tgtgggccga ggtgaccatc gcgcgcgccg cggccgcgct cagcgaggac gcgtcaggtc
     9121 cgttggcggt gcttcacgag cacgacgagc agcacggcag cgactatctg cagaccctgg
     9181 ctgcctggct ggaccacccc ggcgccccgg cgcaggcggc ccgctcgatc catgtgcacc
     9241 cgaacaccat gcggtatcgc atgacccgcc tagcggacct ggctggcctg gacctggaca
     9301 acgccaccgt gcggttggcc gtacgcctgc agctggccgc gtcgctggct cagggcgcga
     9361 cgtcgtagct gtcattcctg cgcggatgtc tcgcgcttcg gcactccgat tctcttgagg
     9421 tagaacgact ttcgtcgcgc ccctcgcgga ggcgtgcaag ctgcgcgaat gctatctatt
     9481 gcgcaattcc gaccaagggg gcatagtcga ttcagatttg taagcgcttt caatgatgaa
     9541 aggcagccgt gaccatgacc tccgggcgtc cctccgggcc gacgatctat tcggtcgccg
     9601 agctcgctgg cgtgtccatc gcctcggtct cgcgggtgct ccaggggtcg accaccgtct
     9661 cggaagggac tcgggcccgg gtcctccggg ccgccgacga gctgcgctac gtaccgctgt
     9721 ctgccgcccg cagcctggcg gtccgccacc acgaggcgca tggcttggtc ctgcccgagc
     9781 tgtccggtcc ctactactcc gagctgctgc tcggcttcga gtcccgggcc gccgatcttg
     9841 ggcagagcgt ggtgctcatg ctggccgagg gaaagccgga cctggccaag tccgtgcgcc
     9901 ttctggcgac tcgggtcgac ggaatcgcca tgctcggctc ggcagcgatt cccgccgcca
     9961 ccgtgacggc tctgcacggc accaagccgg tcgtcctcat cgctggtagc gcgctgccgg
    10021 acgtcgatgc cgtgacggcc gagaacgcgg tcagcgccaa ggcgctgacc gctcacctgc
    10081 tcggtcacgg gcggacctcg ctgctgttcg tgggcgaccc cgaggccgga cccgacatcc
    10141 gcgaccgata cgccggcttc gttgcggcac accgcagtcg gcgccgcaag gccgccgccc
    10201 ccatccgggt tggtctgcgc gagagtgccg gtatcgcggt cgcggagtgc ctgctcgccg
    10261 gcgacgccgt cgcggacggg ctggtgtgcg ccaatgacga gctcgcgctg tcgatcatga
    10321 aacggctccg cgaaggcggc tggaacgtac ccgcggacct cgccgtggtc ggctgggacg
    10381 acgtgatgac cgcacgctac gtcgagccgg gactgactac cgtgcgccag cccgtccgcg
    10441 agctgggcgc gatggccgcc gaccggctgc acgcccgaat caccggagct gtcaccggct
    10501 tcggcaccga agtgatcccc acccacctgg tcatcaggtc ctcctgcggg tgcccacccc
    10561 cacccgccac cggaccacgc acgccgccac cgcggcatac gaagaagagc acccaacgaa
    10621 agagagaatc ccgatgagac gcacccccgt gctggccgtc gccactgtcg cggcaacggc
    10681 gctcgccctg accgcctgcg gtcgcggcag taccaacgcg acgagcaacg acacagccaa
    10741 gagcatcagc agtggcaagg ccacgggcgc catcacggtc tgggccatgg gcgccgaggg
    10801 tgacaagctg cccgacctcg cgaagcagtt cgaggctgcc aacccggggg tcaaggtcaa
    10861 cgtcaccgcc atcccgtggg atgccgctca cgacaagttc acgacggcga tcacggccgg
    10921 gtccacgccc gacgccgcga tggtcgggac gacctggatg ggcgagttcg c
//
LOCUS       DASYFY010000158         2918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1167597, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000158 DASYFY010000000
VERSION     DASYFY010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1167597"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VGN19_02980"
     CDS             complement(<1..271)
                     /locus_tag="VGN19_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7194880.1"
                     /translation="MITVTGARKTFGSFTALDDVSLQIPAGSLTALLGPSGSGKSTLL
                     RSIAGLENLDAGTIVIGGRDLTGVSPQKRGIGFVFQHYAASKHMTV"
     gene            complement(268..1074)
                     /gene="cysW"
                     /locus_tag="VGN19_02985"
     CDS             complement(268..1074)
                     /gene="cysW"
                     /locus_tag="VGN19_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015772601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HEV7194881.1"
                     /translation="MRTSTPTRLGLRAVALGYLVVLLAVPIALILWRTFGPGVGAFLA
                     SVRTPAAISALNLSLLIVAIVVPLNVVFGVGAALALVRGRFPGRGLLQVVVDLPFAVS
                     PIVVGVSLILLWGTGGWFGGIEHYGIRVIFGLPGMVIATLFVTLPFVVREVEPVLHEI
                     GTEQELAAATLGASPWQTFWRITLPAIRWGLTYGVVLTIARALGEFGAVIMVSSGFPG
                     VSQTLTLLVHSRYIDDHNTYGAYAAATLLMGLAVLTLLLMTLLDRKRSTT"
     gene            complement(1071..1940)
                     /gene="cysT"
                     /locus_tag="VGN19_02990"
     CDS             complement(1071..1940)
                     /gene="cysT"
                     /locus_tag="VGN19_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HEV7194882.1"
                     /translation="MTATATARRDDTAEVPSLPPRPEPTRRPSARPLGVGLVGLWLSL
                     VVLLPLAALTVTSFGDGWSGFWAAVTAPVALASLWITVAVAAVVAVLNAVMGTLIAWV
                     MVRDDFVGKRVVNALIDLPFALPTIVASIVLLSLYGPDSPVHIQLNATRPGLVVALAF
                     VTLPFVVRSVQPVLIEADREVEEAASSLGASNWTTFRRVVLPTLAPAIISGTGLAFAR
                     AIGEYGSVVLIGGDIPRRTQVASQYIQQQIEIDRPVNAAAVSVALLAIAFVTLFVLRI
                     VASRSRRREEESP"
     gene            complement(1944..>2918)
                     /locus_tag="VGN19_02995"
     CDS             complement(1944..>2918)
                     /locus_tag="VGN19_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0043199 - sulfate binding [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEV7194883.1"
                     /translation="CAGGGASDVAATGANAENAAATTSTLNLFAYSVPKPGFDKVIPA
                     FEATPAGKGVQFQESYGASGDQSRKVAAGAPADLVNFSVEPDITRLVKAGLVDKTWNA
                     GPDKGVPFGSVVTIVVRKGNPKGIHSWDDLLKPGIQVVTPNPFSSGSAKWNLLAPYAA
                     KSNGGKDPQAGLAYLTKLITAHVKVQPKSGREATETFLQGTGDALISYENEALFAERS
                     GDPVQHVTPSQTIKIENPVAVLKNSANPAKAKAFYDYLVTPQAQRLWAQAGFRPVDPT
                     VAKQFVADFPQPAKLWTIDDLGGWKKVDSTLFTKGTGSIAVIYDKATS"
BASE COUNT          499 a          973 c         1019 g          427 t
ORIGIN      
        1 gcaccgtcat gtgcttggac gccgcgtagt gctggaagac gaacccgatc ccccgcttct
       61 ggggcgacac ccccgtgagg tcccggccgc cgatgacgat ggtgcccgcg tcgaggttct
      121 ccagcccggc gatggatcgc agcagcgtcg actttcccga cccgctcggt ccgagcaggg
      181 cggtcagcga ccccgccggg atctgcaggc tcacgtcgtc caaggcggtg aagctgccga
      241 acgtcttgcg cgcgccggtc acggtgatca tgtcgtgctc ctcttgcggt ccagcagggt
      301 catcagcagc aacgtgagaa ccgcgagccc catgagcagg gtcgccgcgg catacgcgcc
      361 gtaggtgttg tggtcgtcga tgtagcgcga gtggacgagc agcgtgagcg tctgcgagac
      421 cccggggaag cctgagctga ccatgatcac cgcgccgaac tcgcccaagg cgcgggcgat
      481 cgtgagtacc acgccgtacg tcaagcccca tcggatggcc ggcagcgtga tgcgccagaa
      541 ggtctgccac gggctggctc cgagggtggc cgccgcaagc tcttgctcgg taccgatctc
      601 gtgcaggact ggttccacct cccgcaccac gaacgggagc gtgacgaaga gggtcgcgat
      661 caccatgccg ggcagcccga agatgacccg tatgccgtag tgctcgatcc caccgaacca
      721 gccccccgtc ccccacaaga ggatcaagga gactcccacg acgatcggcg agacggcgaa
      781 cggcaggtcc acgaccacct gcagcagtcc gcgtccgggg aacctgccgc gcaccagcgc
      841 gagcgccgca ccgaccccga acaccacgtt gagcgggacc acgatcgcga cgatgagcag
      901 ggacaggttg agggccgaga tcgcggccgg cgtccggacc gacgccagga acgcgcccac
      961 ccccggtccg aaggtccgcc agaggatcag cgcgatcgga accgcgagca ggaccacgag
     1021 gtagcccagc gcgaccgcgc gcagaccgag gcgggtcggg gtcgaggtcc tcatggcgac
     1081 tcctcctcgc gacgacggct gcggctcgcg acgatgcgca gcacgaacag ggtgacgaag
     1141 gcgatggcga gcagggcgac cgagacagcg gccgcgttga cgggccggtc gatctcgatc
     1201 tgctgctgga tgtactgcga ggccacctga gtccggcgtg ggatgtcacc gccgatcagc
     1261 accaccgagc cgtactcgcc gatggcacgg gcgaaggcca gcccggtgcc actgatgatc
     1321 gcgggcgcca gggtcggcag caccacccga cggaacgtgg tccagttcga ggcgcccagc
     1381 gacgaagccg cctcctcgac ctcgcggtcc gcctcgatga gcacgggctg cacggatcgg
     1441 accacgaacg gcagagtgac gaaggccagg gcgacgacca gtccagggcg ggtggcattg
     1501 agctggatgt gcaccgggct gtcggggccg tacagcgaca acaacacgat gcttgcgacg
     1561 atcgtgggca gcgcgaacgg caggtcgatg agcgcgttga cgacccgctt gccgacgaag
     1621 tcgtcacgca ccatcaccca ggcgatcagc gtgcccatga ccgcattcag caccgcgaca
     1681 accgcagcca ccgcgaccgt gatccacaat gaggccaagg caaccggcgc tgtgacggcg
     1741 gcccagaacc ccgaccaccc gtcgccgaac gaggtcacgg tgagggcggc gagcggcagc
     1801 aggacgacca ggctgagcca gagcccgacc agccccaccc cgagggggcg agcagacggg
     1861 cgacgggttg gctccgggcg tggcggtagg gacggcacct cggcggtgtc gtccctacgc
     1921 gcggtggcgg tggccgtcat gggctaggac gtcgccttgt catagatgac cgcgatcgag
     1981 ccggtgccct tggtgaacag cgtgctgtcc acctttttcc agccaccgag gtcgtcgatg
     2041 gtccagagct tcgcgggctg ggggaagtcc gccacgaact gcttggcgac cgtggggtcg
     2101 actgggcgga acccggcttg ggcccacagc cgctgggcct gcggcgtgac gaggtagtcg
     2161 tagaaggcct tggccttcgc ggggttcgca ctgttcttga gcacggccac ggggttctcg
     2221 atcttgatcg tctgggacgg cgtcacatgt tgcaccgggt caccgctgcg ctcggcgaag
     2281 agcgcctcgt tctcatagct gatcagcgca tcaccggtgc cctggaggaa cgtctcggtg
     2341 gcctcacgcc cggacttggg ctgaaccttg acatgagcgg tgatgagctt ggtcaggtag
     2401 gccaggcccg cctgcgggtc cttgccgcca ttgctcttcg cggcatacgg agcgagcagg
     2461 ttccacttgg cactccccga gctgaacggg ttgggcgtca cgacctggat gcctggcttg
     2521 agcaggtcgt cccagctgtg gatgcccttg gggttgccct tgcggaccac gatggtgacc
     2581 accgagccga acggcacgcc cttgtccggc cccgcgttcc aggtcttgtc gaccaggcct
     2641 gccttgacca ggcgcgtgat gtcgggctcc accgagaagt tgacgaggtc cgcgggcgcg
     2701 ccggcggcga ccttgcggga ctggtcgcct gaggctccgt aggactcctg gaactgcaca
     2761 cccttgccgg ccggggttgc ctcgaaggcc gggatgacct tgtcgaaccc cggcttcggc
     2821 acggagtacg cgaagaggtt gagggtgctg gtggtcgcgg ctgcgttctc ggcgttagcc
     2881 ccagtagcgg ccacatcgct ggctccgccg ccggcaca
//
LOCUS       DASYFY010000159         2873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_221423, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000159 DASYFY010000000
VERSION     DASYFY010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221423"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..708)
                     /locus_tag="VGN19_03000"
     CDS             complement(<1..708)
                     /locus_tag="VGN19_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194884.1"
                     /translation="MTHRHKTRMILASLTATALGAAAPAALAGPSQGPASGGASGCQP
                     TITALPLPAGDTNGDILANAGPFAAGFVADDAQHQSVAVWRRSGGSWTVRDLGDFGIS
                     GLSSGLSATGVNIRGEVALGVNADTMAGWVFTGGSAHQLKDFAGGTLAFARAINAHGV
                     VAGEALDAQGNDFAAVWPHWWSAPVRLGPVPGYDGSFGQGIDDRGDVTGGSFSFGALP
                     QVAVRWDPSGHPTTLPGL"
     gene            complement(742..2400)
                     /locus_tag="VGN19_03005"
     CDS             complement(742..2400)
                     /locus_tag="VGN19_03005"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEV7194885.1"
                     /translation="MAIGGAVGPDHLESRASRLTRSAVLGPSGGTRVAGLGRAAAAAL
                     EERDLPSARSLLAALESSTAATATEQVTVLGARIMLADGALVEGARLLQEAAESLPPS
                     RWREAARLLVEASRALVDADLVADALTLITQARGRLTGGDPVLSLLVESTYAEALAVG
                     GQFMPAVLAYRKAAERADRKRTVHADPNASICLAEALHSAGLNDRARQLTRTLADAAR
                     ARGDLAGLRYLLSIRFSIESVDGRVAAARRAATEELWIAADGGLKRERKESLGHLAWC
                     AAYAGQQDECRRLVQERLELMRRSGSGRAAHQSLGVLELGLGNAEAAVPLLSAILDEQ
                     TATGWRTAGTFSPVAPELIEALARSGRVAEATGLLDRFEADATDLARPHSISLAHRCR
                     GLLPDCLDVDAEFGSALLADLGEPRPLERARTLLTWGERLRRQRRRAEAITRLGEALD
                     LFTELGADLWRRRTLVEMSACGRRVGTHGPFDPLELTPQERRVSSLVSTGLSNKAVAD
                     RMFVSVNTVETHLRHAFVKLDVRSRTELARKFTDLRDSTLPADP"
     gene            2620..>2873
                     /locus_tag="VGN19_03010"
     CDS             2620..>2873
                     /locus_tag="VGN19_03010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194886.1"
                     /translation="MTSARQPALAILAPVDANPAKPPGHPYVAASRELFAALTDTQTA
                     LTPRPSSDLTPEAQRMMLTLAHAASALSARVTTIDALAGQL"
BASE COUNT          468 a         1039 c          949 g          417 t
ORIGIN      
        1 taggcccggc aacgttgttg gatggccgct ggggtcccat cggaccgcca cttggggcaa
       61 ggccccgaat gagaagctgc ctccggttac gtcacccctg tcgtcgatgc cctgtccgaa
      121 cgagccgtcg tacccgggaa ctgggccgag gcggaccggg gccgaccacc aatggggcca
      181 gactgcggca aagtcgttgc cctgagcgtc gagggcctcc ccagcgacga ctccgtgcgc
      241 gttgatcgcg cgagcgaagg ccaacgtgcc tccggcgaag tccttgagtt ggtgcgccga
      301 gccccctgtg aagacccagc cggccatggt gtcggcgttc acaccaagcg ctacctcgcc
      361 gcggatgttg accccggtcg cggacagtcc ggaggacagc ccgctaatcc cgaagtcgcc
      421 aaggtcgcgg accgtccagc tcccgccgga gcgacgccag acggcgacgc tttgatgctg
      481 ggcgtcgtct gcgacgaagc ctgcagcgaa gggcccggca ttggccagga tgtccccgtt
      541 ggtgtctccc gccggcaacg gtagggccgt gatggtgggc tgacagccgg aggcaccgcc
      601 cgacgcgggg ccctgggagg gtccggccaa cgcggccggt gccgcggcgc cgagggcggt
      661 cgcggtgagg ctcgcaagga tcatcctggt cttatggcgg tgcgtcatgt cggcctcctc
      721 tgcgtggatg gtctcttgac gctagggatc tgcgggcaat gtcgaatcac ggagatccgt
      781 gaacttgcga gccagctcgg tgcgggagcg gacgtcgagc ttgacaaagg catggcgcag
      841 gtgggtctcg accgtgttga cgctgacgaa catccgatcc gcgaccgcct tgttgctcag
      901 gccggttgag accagcgatg agacccggcg ctcctggggg gtgagctcga gggggtcgaa
      961 cggtccgtga gtccccaccc gtcgtccgca ggccgacatc tcgaccagcg ttcgcctccg
     1021 ccacaggtcc gccccgagct cggtgaacag gtccagggcc tcgccaagtc tcgtgatcgc
     1081 ctccgctcga cgcctctgtc gccgaagtcg ctccccccac gtcaacaggg tgcgggcccg
     1141 ctcgagcggg cgcggctccc caaggtccgc gagcagggca ctcccgaact cggcgtcgac
     1201 atcgaggcag tcgggcagga gccctcggca ccggtgcgct agcgagatcg agtgcgggcg
     1261 ggcgaggtcg gtggcgtcag cctcgaagcg gtccaggagt ccggtggcct cggcgactcg
     1321 accactacgg gccagggcct cgatcagttc gggggcgacc ggcgagaacg tgcccgccgt
     1381 tcgccagccg gtcgcggttt gctcgtcgag gatggcggag agaagcggca ccgcggcctc
     1441 ggcgttgccc aatccgagct ccagaacacc cagcgactgg tgcgccgccc gtcctgaacc
     1501 gctgcgccgc atcagctcca gacgttcctg caccaaccga cgacattcgt cctgctggcc
     1561 cgcgtaggcc gcgcaccagg ccagatgacc gagtgactcc ttgcgttccc gcttcaggcc
     1621 tccgtcggcg gcgatccaca gctcctcggt ggccgcacgc cgggcagccg ccacccgtcc
     1681 gtcgacggac tcgatgctga accggatcga cagcaggtag cgcaggccag ccaggtctcc
     1741 ccgggcccgc gcagcgtctg ccaaagttcg cgtcaactgg cgcgcccggt cattgagacc
     1801 ggcagagtgg agggcctcgg ccaagcagat ggacgcgttt gggtcggcgt ggaccgttcg
     1861 cttccggtcg gccctctctg ccgccttgcg ataggccagc acggccggca tgaactgccc
     1921 tcccaccgcc agagcctcgg cgtaagtcga ctcgacgagt agggacagga ccgggtcgcc
     1981 tcccgtcaac cggccccggg cttgcgtgat cagcgtgagc gcgtcggcga ccaggtccgc
     2041 atcgaccaac gccctgctcg cttcgaccag gagccgcgct gcctctcgcc atctggaggg
     2101 aggcagcgat tcggccgcct cttgcagcag tcgggcgccc tcgacgagtg caccgtcagc
     2161 cagcatgatt cgggcgccca gcaccgtcac ctgctccgtg gcagtcgccg cggtcgaaga
     2221 ctcgagcgcc gccagcagcg accgggcact cgggagatcc cgctcctcca gggccgccgc
     2281 cgcggcgcga cccaagccgg cgacacgggt tcctcccgaa ggccccaaga ccgccgagcg
     2341 cgtcaaccgt gaggctcgac tctccaggtg atcaggcccg acggccccgc cgatcgccat
     2401 gaattcgact gtagacgcgt ggtggcagca gctacgggtt ctgtgcagat cccatcagag
     2461 actccgcgga gagcctgatg cccaggtctc cgacagccgc cgcccgcgac tccaggccac
     2521 acgcccgccg ccgagaacct caaaacccca acaatgacag ccaggaaaga aaacaggttc
     2581 acccagtctc cgacgacggg gttgccgtcg agaagctaga tgaccagtgc ccgccaacct
     2641 gcgctggcca tcttggcgcc agtcgacgcc aaccctgcca agccccccgg tcacccctac
     2701 gtcgcggcca gccgcgagct gttcgccgcc ctcaccgaca cccagacggc actcactcca
     2761 cggccgtcga gtgacctgac accagaggcc caacgcatga tgctcaccct ggctcacgcc
     2821 gcttcagcgc tgagcgcccg ggtgaccacc atcgacgcgc tcgccggcca act
//
LOCUS       DASYFY010000160         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_852635, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000160 DASYFY010000000
VERSION     DASYFY010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852635"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..860
                     /locus_tag="VGN19_03015"
     CDS             222..860
                     /locus_tag="VGN19_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012630898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEV7194887.1"
                     /translation="MRLARRSTLAALTLALPLGLAACGSSGTSDASSSSSSSSPMSSS
                     SSSSSAATDAMSAKPFGSACSAVPADGKGSFAGMAMDPVATAASNNPVLSQLVGAVKA
                     AGLVQTLNTAKDITVFAPTDDAFAALPKATLNAAMKDPKGLLSKVLTNHVVAGRLTPD
                     MLAGDHKTLAGTTISVTGSGDSFKVGTANIVCGNVQTANATVYIIDSVLLPK"
     gene            882..1490
                     /gene="sigK"
                     /locus_tag="VGN19_03020"
     CDS             882..1490
                     /gene="sigK"
                     /locus_tag="VGN19_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ECF RNA polymerase sigma factor SigK"
                     /protein_id="HEV7194888.1"
                     /translation="MPATPTGSPRPWGGAGMGTGGTMDLVELLRASARGDESAFAQLY
                     DAVAARVHGLVLRVVRDRAQSEEVTQEVFLDIWRTSARFDPALGSPLSWMLTIAHRKA
                     VDRVRSAQSSTDREDVYGSRNQDRSFDQTAEAVETRLEAQRVHHALESLTPTQRGAVE
                     LAYFGGYTHIEVAALLDVPLGTAKTRIRDGLIRLRDTMGVNS"
BASE COUNT          259 a          576 c          486 g          217 t
ORIGIN      
        1 gggtcggcat gagctgaccg cgcgcgcgac cgacaacacc ggtacccccc agaccgccca
       61 gcaggccgac ccgtacccgt cgggcgcctc gggataccac tccatcgtcg tcgtcatcag
      121 ttcgtgagct ccgcggaaga actgttgcgc aacagggcaa tccgccacag agggggcacc
      181 gaatcactgg tgcaagcatt tccctcacaa ggagccacac catgcgactc gcacgccgca
      241 gcaccctcgc tgccctcacc ctcgccctgc cgttgggcct cgcggcctgc ggcagctcgg
      301 ggacgtcgga cgcctcgtcc tcgtcctcgt ccagctcacc gatgagcagc tcctccagct
      361 cctccagcgc ggccacggac gcgatgtcgg ccaagccgtt cggctccgcc tgctcggccg
      421 tgcccgccga cggcaagggc tcgttcgccg gcatggcgat ggacccggtg gcgaccgccg
      481 cgagcaacaa cccggtcctg agccagctcg tcggcgccgt caaggcggcc gggctcgtcc
      541 agactctgaa cacggccaag gacatcacgg tcttcgcgcc gacggacgac gcgttcgccg
      601 cgctgccgaa ggcgactctc aacgccgcca tgaaggaccc gaagggactg ctgtccaagg
      661 tcctcacgaa ccacgtggtg gctggcaggc tcacccccga catgctggcc ggtgaccaca
      721 agaccctcgc cggcacgacc atctcggtga cgggatcggg cgactcgttc aaggtcggca
      781 ccgcgaacat cgtctgcggc aacgtgcaga ccgcgaacgc cacggtctac atcatcgaca
      841 gcgttctgct tccgaagtag gcgtcagcga gaatggtgcc catgccagcg actcccacag
      901 gctcaccccg gccctgggga ggcgctggca tgggcaccgg cggaacaatg gacctcgtcg
      961 agctcctgcg cgccagtgct cgcggtgacg agtcggcctt cgcccagctg tatgacgcgg
     1021 tggccgcgcg ggtccacggt ctcgtgctcc gcgtcgtgcg cgacagggcg cagtccgagg
     1081 aggtcaccca ggaggtcttc ctcgacatct ggaggaccag cgcccgcttc gaccccgccc
     1141 tgggcagccc gctgagctgg atgctcacca tcgcccaccg caaggcggtg gaccgggttc
     1201 gctcagccca gtcatccacg gaccgcgagg acgtctacgg ctcgcggaac caggaccgtt
     1261 ccttcgacca gaccgcagag gccgtggaga cacggctcga ggcccagcgc gtccaccacg
     1321 ccctggagtc gctgacaccg acccagcgcg gggcggtcga gctggcgtac ttcggcggct
     1381 atacccacat cgaggtggcc gccctgctgg acgtgcccct cggcacggcc aagacccgca
     1441 tccgggacgg cctgatcagg ctccgagaca ccatgggagt gaactcatga gcgccgacat
     1501 ccacgggctg tccggtgcct acgccgtcga tgccctcg
//
LOCUS       DASYFY010000161         2616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_799702, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000161 DASYFY010000000
VERSION     DASYFY010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_799702"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..>2616
                     /locus_tag="VGN19_03025"
     CDS             62..>2616
                     /locus_tag="VGN19_03025"
                     /inference="COORDINATES: protein motif:HMM:NF023275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-(1->3)-arabinofuranosyltransferase family
                     protein"
                     /protein_id="HEV7194889.1"
                     /translation="MIRADRWRQRARGKGIYAALAFVAYVPLLFTKPDILSADTKIYL
                     YLDPGRLMRTALQMWDPQVGMGTVTHQTIGYLFPMGPYYWVMREIGLPVWVAQRIWLG
                     TLLFAAGAGVVYLLRTLRWTGSAVTVAAFVYMLSPYLLDYAAKHSVVASPWSGFPWMV
                     AFTIRAIRGKGWRDAALFAIVVQLIGGVNATSLVFVLVGTTLWLPFCVWVNREATWRR
                     ALGAYVRIGLLTFVTSLWWMSGLWAQGRYGIDILRFTETAKTVASTSSATEVLRGLGY
                     WFVYGSDKYGNFVQIGEPYTQHLWLIGTSLLLPALGLLGSGLGRFRDRAYFVALVVIG
                     TILAVGAHPWGNPPVLGAIFRRLLQTSQAGGAMRSMPRAVPLLVLGLAVLLGSAVGAL
                     SARYPNGPKVLGAALPDRRVLAGVGVLLLLVFVNYPPLFTGQLIAKYLQHPQDVPSYW
                     TQDIKALDRQDNSTRVLEIPGSDFASYRWGTTVDPITPGLMSRDYVARELVPYGTPPS
                     ADFLDAFDTTLQDGVLQSSALAPIARFMAAGDINVRSDLTYERYLLPRPKLLWDLVTR
                     AEGTGASQGLGKPIGFGGTGSNVPDPRFPLLDETELGSNPNLKNPPKVAIVPVLDPEP
                     MVRAAPTSNPVVLVGDGYGTVYASEAQLLTGHELLFYGGTFANDTAALDQQLAKGAAL
                     VLTDTDRKRAERWGTLHDTTGYTERAGEKPLVVDPGDQRVDLFPTATDASRTVSEQRG
                     GVVATATNYGNPVSYTPEDRAANAVDGNPYTMWQVGGFSGVSHEKLNLAFGKTQTTDH
                     VRLVQPLTGVRNRWLTKVALHFDDGPPVYETLDPVSRTIAGQVLTFPGRSFKKL"
BASE COUNT          363 a         1008 c          850 g          395 t
ORIGIN      
        1 tcacagcact cgccgaggag acccaagggc gggggcatcg gggccgcacc ggccgctggc
       61 gatgatccga gccgatcgct ggcgccagcg cgcccgaggg aagggcatct acgcggccct
      121 cgcgttcgtc gcgtacgtcc ccctgctgtt caccaagccc gacatcctga gcgccgacac
      181 caagatctac ctgtacctcg accccggccg cctcatgcgc acggcgctgc agatgtggga
      241 cccgcaggtc ggcatgggca cggtcaccca ccagaccatc ggctacctct tccccatggg
      301 gccgtactac tgggtgatgc gcgagatcgg cctgcccgtg tgggtggccc agcgcatctg
      361 gctcggcacg ctgctgttcg ccgcgggcgc cggggtggtc tacctgctcc gcaccttgcg
      421 ctggacgggc tcggccgtca ccgtcgccgc cttcgtctac atgctgagcc cgtacctgct
      481 cgactacgcc gccaagcact ccgtggtggc gtcgccgtgg tcgggcttcc cctggatggt
      541 ggccttcacg atccgggcca tccggggcaa gggctggcgc gacgccgccc tgttcgccat
      601 cgtcgtgcag ctcatcgggg gcgtcaacgc cacctccctg gtcttcgtgc tggtcggcac
      661 cacgctctgg ctgccgttct gcgtctgggt gaaccgcgag gccacctggc gccgggccct
      721 gggcgcgtac gtgcgcatcg gcctgctcac gttcgtcacc tcgctgtggt ggatgtcggg
      781 tctgtgggcg cagggtcgct acggcatcga catcctgcgg ttcaccgaga cggccaagac
      841 cgtggccagc acctcctcgg ccaccgaggt gctgcgcggc ctcggctact ggttcgtcta
      901 cggcagcgac aagtacggca acttcgtcca gatcggtgag ccctacaccc agcacctctg
      961 gctgatcggc acgtcgctgc tgctccccgc gctggggctg ctcggcagcg ggctcggacg
     1021 gttccgcgac cgggcctact tcgtcgcgct ggtcgtgatc ggcacgatcc tggccgtcgg
     1081 cgcccacccg tggggcaacc cgccggtgct cggcgcgatc ttccgccggc tgctgcagac
     1141 gtcacaggcg ggcggcgcca tgcgcagcat gccccgtgcg gtaccgctgc tggtactcgg
     1201 cctggccgtg ctgctcggct ccgcggtcgg cgccctctcg gcccgctacc ccaacggccc
     1261 gaaggtgctc ggcgcggcgc tccccgaccg gcgggtcctg gccggcgtgg gcgtgctgct
     1321 gctgctcgtg ttcgtcaact acccgccgct gttcaccggg cagctgatcg ccaagtacct
     1381 ccagcacccc caggacgtcc ccagctactg gacgcaggac atcaaggccc tcgaccggca
     1441 ggacaacagc acccgggtgc tcgagatccc cggctccgac ttcgcctcct accgctgggg
     1501 caccaccgtc gaccccatca ccccggggct catgagccgt gactacgtgg cccgggagct
     1561 ggtcccctac ggcaccccgc cgtcggccga cttcctcgac gccttcgaca ccaccctcca
     1621 ggacggggtg ctccagtcga gcgcgctggc gccgatcgcc cgcttcatgg ccgcgggcga
     1681 catcaacgtg cgctccgacc tcacctacga gcgctacctg ctgccgcgcc ccaagctgct
     1741 gtgggacctg gtcacccgcg ccgaggggac gggcgccagc cagggcctcg gcaagcccat
     1801 cggcttcggc gggacgggct ccaacgtgcc cgacccgcgg ttccccctcc tcgacgagac
     1861 cgagctgggc tccaacccca acctgaagaa cccgccgaag gtggcgatcg tgccggtgct
     1921 cgaccccgag ccgatggtgc gcgccgcgcc gaccagcaac ccggtcgtgc tcgtgggcga
     1981 cggctacggc accgtctacg cgtcggaggc gcagctgctc accggtcacg agctgctctt
     2041 ctacggcggc accttcgcca acgacaccgc ggccctcgac cagcagctgg ccaagggcgc
     2101 cgcgctcgtg ctcaccgaca ccgaccgcaa gcgggccgag cgctggggca ccctgcacga
     2161 caccaccggg tacaccgagc gggccggcga gaagcccctc gtcgtcgacc ccggcgacca
     2221 gcgcgtcgac ctcttcccga cggccaccga cgcttcgcgc accgtgtcgg agcagcgcgg
     2281 cggggtggtg gcgacggcca ccaactacgg caacccggtg agctacacgc ccgaggaccg
     2341 ggccgccaac gcggtcgacg gcaacccgta caccatgtgg caggtgggcg gcttctccgg
     2401 cgtgagtcac gagaagctca acttggcctt cggcaagacc cagaccaccg accacgtgcg
     2461 cctggtgcag cccctcaccg gcgtgcgcaa ccgctggctc acgaaggtgg cgctgcactt
     2521 cgacgacgga cctcccgtgt acgagacgct cgaccccgtg tcgcgcacga tcgcgggcca
     2581 ggtgctcacg tttcccggcc gcagcttcaa gaagct
//
LOCUS       DASYFY010000162         2810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_905370, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000162 DASYFY010000000
VERSION     DASYFY010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_905370"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VGN19_03030"
     CDS             <1..264
                     /locus_tag="VGN19_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194890.1"
                     /translation="DTVAFGTASRPVILVKNGDAASHTVTLAGKATCNQGFTHSVAYT
                     VAAGAEVEILPPPNTIDTASATRGQVSLTYDAVTSVSVAALAS"
     gene            278..610
                     /locus_tag="VGN19_03035"
     CDS             278..610
                     /locus_tag="VGN19_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194891.1"
                     /translation="MTEPVVSAEERAFLDEEASHWGKWRATSPIYIDGVRALNPGADV
                     PNGLVETYHLAEQGLVEEIGTEHSADESAEESAAPPQGEPIQGNATVIGQASDDGPIS
                     DELPRKQK"
     gene            684..1274
                     /locus_tag="VGN19_03040"
     CDS             684..1274
                     /locus_tag="VGN19_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194892.1"
                     /translation="MANATLATPNYLVDPGVLYFAVVGTPLPANTVGGSVFTDTWASA
                     GAWVQLGMTETGSDIDVNDTASPIAAAERREPLGYQITTRTTTITFSLKGYTASNLAR
                     AYNGATTAVTGTGATTLTKVSLPTPGAETRFMLGWESTDSTVRWVAYQCLNTGSKKMS
                     FAKAPATALIPFTAMGELSSTYGQASDFWFAGANRA"
     gene            1271..1705
                     /locus_tag="VGN19_03045"
     CDS             1271..1705
                     /locus_tag="VGN19_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194893.1"
                     /translation="MSTFEFLGQEFEYAVESPYESYAWLEFCDVMASGEDVDAREANA
                     AALRMALASVAKSDRARFQRLCRKENPPIREFMQIAQGWVQEATGRPTQLPSDSSDGH
                     SDGPAPSAPKRVVSVSSHPAPVESRVPARTVVAARRSGLISA"
     gene            1717..1920
                     /locus_tag="VGN19_03050"
     CDS             1717..1920
                     /locus_tag="VGN19_03050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194894.1"
                     /translation="MCDLAHAVQSERAERLILASVSGGGLSAAEAQDRLALFEESLTR
                     ELPGSPHDELIARIRRQVEQEVA"
     gene            1921..2373
                     /locus_tag="VGN19_03055"
     CDS             1921..2373
                     /locus_tag="VGN19_03055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194895.1"
                     /translation="MAVVNGDKQLAEIGARLRAAGDVEITRVVRRTIQAAAKPLIPII
                     QESARESLPKAGGMNKYVARRRPRTQVKFGARSAAVRITYRGKGAPSDKGPWRHPVFG
                     HRDRWVPQEYKPAEGWWERAEKRGTPPAELAMRTVLETVKRQVNGWGL"
     gene            2373..>2810
                     /locus_tag="VGN19_03060"
     CDS             2373..>2810
                     /locus_tag="VGN19_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194896.1"
                     /translation="MADSVALVWDLIARDNASATFRKVGAEAEGASGAVGKLVGGFTA
                     LAVGGAIAASVKAAADFQASMLLIQTQAGASRAEVEKMSPAILNLAGQVAQAPEALAT
                     SLYHVESTGLRGAKALEAVQIAAEGAKVGHADLEQTTNALTATI"
BASE COUNT          435 a          956 c          992 g          427 t
ORIGIN      
        1 gacaccgtcg cgttcggcac tgcgagccgg ccggtgatcc tcgtgaagaa cggcgatgcc
       61 gccagccaca cagtcaccct cgcgggcaag gccacctgca accagggctt cacgcactcg
      121 gtggcttaca ccgttgcggc cggtgctgag gtggagatcc tgccgcctcc caacacgatc
      181 gacacggcct ccgcgacccg cggccaggtc tccctcacct acgacgcggt cacgtccgtg
      241 tcggtcgccg ccctcgccag ctgagaagag gagatccatg actgagccag ttgtttccgc
      301 cgaggagcgc gccttcctgg acgaggaggc gtcgcattgg ggcaagtggc gggccacttc
      361 ccccatctac atcgacggcg tgcgggcgct caacccgggc gcggacgtcc ccaacggtct
      421 cgtcgagacc taccacctgg ccgagcaggg tctcgtggag gagatcggca ccgagcacag
      481 cgccgacgag tcggcagaag agtcggccgc gcccccgcag ggtgagccga tccagggcaa
      541 cgcgaccgtc atcgggcagg cgtccgacga cggccccatc tccgacgaac tgccccgcaa
      601 gcagaagtaa ctcctccttc ccacctcgag ccccgtagcg ccgtgctgcg gggattcccc
      661 atgcccggaa aggccacacc gtcatggcga acgccaccct cgctaccccg aactaccttg
      721 tcgacccggg cgtgttgtac ttcgccgtcg tcggcacccc gctgcccgcg aacaccgtcg
      781 gcggcagcgt gttcaccgac acctgggcct cggcaggggc gtgggtgcag ctgggcatga
      841 ccgagaccgg ctcggacatc gacgtcaacg acaccgcgtc gccgatcgcc gctgcggagc
      901 gccgcgagcc gctgggctac cagatcacca ctcgcaccac cacgatcacc ttctcgctga
      961 aggggtacac ggcgtcgaac ctggcccgtg cctacaacgg ggcgacgacg gctgtgacgg
     1021 ggactggtgc cacgactctg accaaggtgt cgctgccgac ccccggcgcg gagacccgat
     1081 tcatgctcgg ctgggagtcc accgactcca ccgtgcggtg ggtggcctac cagtgcctca
     1141 acaccggcag caagaagatg tccttcgcca aggcccccgc cacggcgctg atcccgttca
     1201 cggcgatggg tgagctgtcg tccacctacg gtcaggcgtc ggacttctgg ttcgccgggg
     1261 cgaaccgcgc atgagcacct tcgagttcct cggccaggag ttcgagtacg cggtggagtc
     1321 cccgtacgag agctatgcgt ggctggagtt ctgcgacgtc atggcgtcgg gcgaggacgt
     1381 ggacgcacgg gaggcgaacg ctgccgcgct gcgtatggcg ctcgccagtg tcgccaagtc
     1441 ggaccgggcg cgtttccagc ggctgtgccg caaggagaac ccgccgatcc gggagttcat
     1501 gcagatcgct caggggtggg ttcaggaggc gaccgggcgc cctacgcagc tgccctccga
     1561 ctcctcggat gggcactcgg acggcccagc accgtccgca ccgaagcgcg tcgtctcggt
     1621 ttcgtcgcac ccggccccag tcgagtcgcg ggttccggcg cggacggtgg tcgccgcccg
     1681 ccgttcgggg ttgatctcgg cctgactttg cgggacgtgt gcgatctcgc gcacgccgtg
     1741 cagtccgagc gcgccgagcg gctgatcttg gcgagcgttt ccggtggggg gctgtccgcc
     1801 gccgaggcgc aggaccggct ggccctgttc gaggagtccc tgacccgcga actcccgggg
     1861 tcaccgcacg acgagttgat cgctcgtatc cgtcgacagg ttgaacagga ggtggcctga
     1921 gtggcggtcg tcaacggtga caagcagctc gccgagatcg gcgctcgcct ccgggcggct
     1981 ggcgacgtgg agatcacgcg ggtggtgcgg cggacgattc aggctgccgc gaagccgctc
     2041 atcccgatca ttcaggagtc ggctcgggag tcgctgccga aggccggcgg gatgaacaag
     2101 tatgtcgccc gccggcgtcc gcggactcag gtcaagttcg gggcgcggtc tgcggcggtg
     2161 cggatcacct accggggcaa gggtgctccg tcggacaagg gtccgtggcg gcaccctgtc
     2221 ttcggccacc gcgatcggtg ggtgccgcag gagtacaagc ccgctgaggg ctggtgggag
     2281 cgcgccgaga agcgtggcac ccccccggcc gagttggcga tgcggaccgt cctcgagacg
     2341 gtcaagcgcc aggtcaatgg gtgggggctg tagtggccga ctctgtggcg ctggtctggg
     2401 acctgattgc ccgcgacaac gcctcggcca ccttccgcaa ggttggcgct gaggcggagg
     2461 gcgcttcggg ggctgtcggg aagctggtgg gcgggttcac cgccctggca gtcggcgggg
     2521 ctatcgccgc ctcggtgaag gccgccgcgg acttccaggc gtccatgttg ctgatccaga
     2581 cacaggcggg cgcctcgcgg gctgaggtcg agaagatgtc cccggcaatc ctgaacctgg
     2641 ccggtcaggt ggcgcaggct ccggaggcgc tggctacgtc gctgtaccac gtggagtcca
     2701 cgggtctgcg gggcgcgaag gcgctggagg ccgtgcagat cgcggccgag ggtgcgaagg
     2761 tcgggcacgc cgacctggag cagaccacca acgccctcac ggcaaccatc
//
LOCUS       DASYFY010000163         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_537773, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000163 DASYFY010000000
VERSION     DASYFY010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537773"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VGN19_03065"
     CDS             complement(<1..366)
                     /locus_tag="VGN19_03065"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEV7194897.1"
                     /translation="MKRIESQVDLPAEPAVVWKHLVDTAGMGSWNPFITSMSGVLDVG
                     ERVEVRIAPVGGRPMSFTPLVTVVEPGRRLEWFGTMGVRGLFDGRHSFTLTPVAEGHT
                     RLVQAEEFSGVLIPFTGKLL"
     gene            complement(407..1225)
                     /locus_tag="VGN19_03070"
     CDS             complement(407..1225)
                     /locus_tag="VGN19_03070"
                     /inference="COORDINATES: protein motif:HMM:NF025687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4386 domain-containing protein"
                     /protein_id="HEV7194898.1"
                     /translation="MSTELQHGTDSVGSQGLGEVELHRALDDRPGAGEYGRAPTSPVR
                     LGRIAGLLYLVVAILGAFAMTVRVNVYAAGDAAATAANLVANSTLVRLSFVADLVQAL
                     VWLVLAVTLYRLLAHAGKSIARAMVVFVTASAAITSLNMVHQLGALLVATDPTYITTF
                     GADGANALALLLMDLQHYGYLIAQLGWLWLFALGLLGIRSGMFPRWLSYLLMLGTVCY
                     ITDALTRFLAPSFADTSAVIFVLPEIVCEVALLAYLLIRGVKTPHHPAPPVVST"
     gene            1377..>1570
                     /locus_tag="VGN19_03075"
     CDS             1377..>1570
                     /locus_tag="VGN19_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HEV7194899.1"
                     /translation="MALRVVFADDNYLVREGVSALLAVADDVDLVDVVANPELLLRSV
                     AVNSPDAVLTDIRMPPTHTD"
BASE COUNT          274 a          497 c          555 g          244 t
ORIGIN      
        1 caggagtttc ccggtgaacg ggatcagcac accggagaac tcctcggcct ggacgagccg
       61 ggtatgcccc tccgcgacgg gagtcagtgt gaaggagtgt cgaccgtcga agagtccacg
      121 gacgcccatg gtgccgaacc actccagtcg ccgaccgggc tcgacgaccg tgaccagcgg
      181 ggtgaaggac atcggcctac cgcccacggg cgcgatccga acctcgaccc gctcccccac
      241 gtcgaggaca ccggacatgg aggtgatgaa ggggttccag cttcccattc cggctgtgtc
      301 gaccaggtgc ttccagacga ccgccggctc cgccggcagg tcgacctggc tctcgattcg
      361 cttcatgact gctccttgat cgatgggcgt tgtctggggt tctggctcag gtggagacga
      421 ccggcggagc cgggtggtga ggggtcttga cgccgcggat gaggaggtag gccagcagcg
      481 cgacctcgca gacgatctcg ggtagaacga agatgacggc cgaggtgtcc gcgaacgacg
      541 gggcgaggaa tcgggtcagc gcgtcggtga tgtaacagac cgtgcccagc atgagcaggt
      601 acgacagcca cctggggaac atgccggacc ggatgccgag cagtccgagg gcgaagagcc
      661 acagccagcc cagctgggcg atcaggtacc cgtagtgctg cagatccatc agcagcaggg
      721 ccagggcatt ggcgccgtcg gcgccgaacg tggtgatgta ggtggggtcc gtcgcgacca
      781 gtaaggctcc gagctgatgg accatgttga gggaggtgat cgctgccgac gccgtgacga
      841 agacgaccat ggcgcgcgcg atgctcttcc cggcgtgagc cagcaggcgg tacagggtca
      901 cggccaggac gagccagacc agcgcttgga ccaggtcggc gacgaagctg agccggacca
      961 gggtggagtt cgccacgagg ttcgccgcgg tcgccgcggc atcaccggcc gcgtagacgt
     1021 tcacccgcac ggtcatggcg aatgcgccga ggatcgcgac gaccaggtag agcaggccgg
     1081 cgatcctgcc cagccgcacc ggcgaggtcg gcgctcggcc gtactcgccc gcgccgggcc
     1141 ggtcgtccag ggctcggtga agctccacct cgcccagccc ttgtgaacca acggagtccg
     1201 ttccgtgctg cagttcggtg ctcatgtcgt tcctgttcct cgtgcttggt cgagcgtcga
     1261 aacttcgaga catcccgacg ctaggaggct gatgcgcgtg gcgcgttggg ggtggcagca
     1321 ctgcggcggg ggcaagccct accgcagtgg ggggctagca ccactacggt cgagacatgg
     1381 cccttcgggt ggtcttcgcc gacgacaact acttggtccg cgaaggggtc tcggcgttgc
     1441 tcgccgtggc cgacgacgtc gacctggtgg acgtcgtggc gaaccctgag ctgctgctca
     1501 gatccgttgc cgtgaactcc ccggatgccg tgctgaccga catccgcatg cctccgaccc
     1561 acaccgacga
//
LOCUS       DASYFY010000164         1664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_695353, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000164 DASYFY010000000
VERSION     DASYFY010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695353"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..346)
                     /locus_tag="VGN19_03080"
     CDS             complement(92..346)
                     /locus_tag="VGN19_03080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194900.1"
                     /translation="MPLPALRFRPHHPPIPAGDRHQPADGYQAEGAEPVEPRQGFGFA
                     VGLHAHHHGGHGAMVTAGHGWWGGFARIRLRRRPLRVDAG"
     gene            complement(328..930)
                     /locus_tag="VGN19_03085"
     CDS             complement(328..930)
                     /locus_tag="VGN19_03085"
                     /inference="COORDINATES: protein motif:HMM:NF039693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6221 family protein"
                     /protein_id="HEV7194901.1"
                     /translation="MSSPLVTFLFAQLDADQAAADDAETACWHIDYCDDRGEPFHDRL
                     SAARVLVEVEAKRQIIAAVDALDKDGDIRSAIGTYLDTDAIWTALALPYADRDGYDPH
                     WAPAPDPVIDDQLERYEAAARGLRGNLLAMVAADMPQPSHLKTAITGMVNHLADTVEG
                     PSPLREMIRNSLDLRPSGNGACYEASWGWVHSQPSCRCPR"
     gene            complement(949..1509)
                     /locus_tag="VGN19_03090"
     CDS             complement(949..1509)
                     /locus_tag="VGN19_03090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194902.1"
                     /translation="MTETAPLTTAVDEDLLCHLTRVVYSDLGFCGCGWPTEGLTVVHE
                     LLAAFGADPWERRSEALLRLLPKDGVRHIVLSVLDHAGLMDHGSSVVGAWLTPRGRWW
                     LYAVETVGGISGLSGRFDEPGIGYPHTGEAADAGQECTDACWVVPDGWEPAGAAVPVV
                     VPPVVVPAAPGPCVRCLYGTPHEQHD"
BASE COUNT          239 a          576 c          597 g          252 t
ORIGIN      
        1 gggtctgacc tgcaccgcga catgcgcagg cccctcacgg cgggggacgg cgtgaggggc
       61 ctgcatgcga cggctgtctt ccggagccga cctagccagc atccacccgg agcgggcggc
      121 ggcgcaggcg aatccgggcg aacccgcccc accacccgtg accagccgtc accatggccc
      181 catggccccc gtgatggtga gcgtgcaggc cgacagcgaa gccgaagccc tggcgtggct
      241 cgaccggctc cgcaccctcg gcctggtacc cgtcggccgg ctgatgccga tcaccggccg
      301 ggatcggtgg atggtgcggg cggaacctca gcgcgggcag cggcacgacg gctgcgagtg
      361 cacccagccc cacgacgcct cgtagcaggc gccgtttccc gacgggcgaa ggtcgaggct
      421 gttccggatc atctcgcgga gcggcgacgg cccctcaact gtgtcggcga gatggttgac
      481 catgccggtg atcgcggtct tgaggtgtga gggttggggc atgtcggcgg ccaccatcgc
      541 gagcaggttc ccgcgcaggc cccgggctgc ggcctcgtag cgttcgagct gatcatcgat
      601 gacggggtcc ggggcgggtg cccagtgcgg gtcatatccg tccctgtcgg cgtagggcag
      661 tgcgagggca gtccagatcg cgtcggtgtc gaggtacgtg ccgatcgcgc tccggatgtc
      721 gccgtccttg tcgagcgcgt ccactgcggc gatgatctgc cgcttggcct cgacctcgac
      781 caggacccgc gccgccgaca ggcgatcgtg gaacggttcg cctcggtcat cgcagtagtc
      841 gatgtgccag cacgcagtct cagcgtcgtc ggctgcggcc tggtcggcgt cgagctgcgc
      901 gaagaggaag gtgacgaggg ggctgctcat ggcgtccatg atgcctgctc agtcgtgctg
      961 ttcgtggggt gtgccgtaca ggcagcggac gcacggcccc ggcgcagctg ggacgacgac
     1021 gggcgggacg acgacgggca cggctgcccc agcgggctcc cacccgtccg gcaccaccca
     1081 gcacgcgtca gtacattcct gccccgcgtc ggccgcttcc cctgtgtgcg ggtagccgat
     1141 cccgggctcg tcgaacctgc cgctcaggcc gctgatgccg ccgaccgtct cgacggcgta
     1201 cagccaccac ctcccgcgcg gcgtcagcca cgcaccgacc acgctcgacc cgtggtccat
     1261 gagcccggca tggtccagga cggatagcac gatgtgccgc acaccgtcct tggggagcag
     1321 ccgcaggagc gcttcgctgc gccgctccca cgggtcggca ccgaacgcgg ccaggagttc
     1381 gtgaaccacg gtcaggccct cggtgggcca gccgcagccg cagaacccga ggtcggagta
     1441 aacgactcgg gtcagatggc agaggaggtc ctcatccacg gcagtggtca gcggcgcggt
     1501 ctcggtcacg gccgctcctc ttcccgggcg ttgcactggt cggcccacgc ctgggcttga
     1561 tcgtgcgtgt tccagcggcc gacgacttcg ccatgggtct ggttgtccca gacatggaag
     1621 gtctggtctg gatcgaaggg cggccacgcc gtgacccgga agcg
//
LOCUS       DASYFY010000165         4005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1798824, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000165 DASYFY010000000
VERSION     DASYFY010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1798824"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /locus_tag="VGN19_03095"
     CDS             <1..684
                     /locus_tag="VGN19_03095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194903.1"
                     /translation="RAAAAAAWPSIVKPTCQVLPPDFPGYRPYCPYTLHPNSRGSWDA
                     PDFVTAERLVAESHTRGMPVTVWSDPPPAPGVEAVVRALRELGYRVSFKVGNPGGDFS
                     AYVSDSRHQVQASFFGWISDDPSVEDFIPPLFACGSFSVGNPNNPNTTGFCDPDIDAL
                     IRHAEQVESTSPHAANDVWALADKRITDASPWISLVNASWVDAVSNRVHHYVRNPVIG
                     VLFDQMWVV"
     gene            707..1309
                     /locus_tag="VGN19_03100"
     CDS             707..1309
                     /locus_tag="VGN19_03100"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEV7194904.1"
                     /translation="MADCIELWSLGRASLVLLEARRMTIGRGPENDITIADAEASAIH
                     AALEPLAGAWSVRDLSSRNGTFVNGERVLTERPLRRGDEIRIGRSRLVYRPESSTTAI
                     DPTATPRGVPDLTRRERDVLLALFSGRIPDAVFFEPATTHEIATELHVTDAAVKQHLV
                     RLYDKFALRLPTERTRARLANEALRRGVISVADIRPADRD"
     gene            1319..2095
                     /locus_tag="VGN19_03105"
     CDS             1319..2095
                     /locus_tag="VGN19_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013838707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7194905.1"
                     /translation="MLLAHDDEGSGPAVVLLHAGVADRRMWDAVMPALARTFRVIRPD
                     LRGFGDTPLTAGEYADADDVDALLASLGVTDGAVVGSSFGGRVAMELAMLHPARVSSL
                     VLLCPAYRGLEPTESVRSFGAEEDRLIEAGDVEGAVDLNVRTFLGPEAGTAARALLTR
                     MQRRAFEVQLAAGKATPAPAPRRVEVDPTAITVPTLTVSGAQDLDHFRQIAIHLAGQI
                     PGAEHVEFDWAGHLPAMERPDALLALLLDVLRDDPTVHAP"
     gene            2304..3239
                     /locus_tag="VGN19_03110"
     CDS             2304..3239
                     /locus_tag="VGN19_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017833489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEV7194906.1"
                     /translation="MVPARSVTLRFLAAPTDAGYSGNVSAGRVLEWIDKAGYAAAVGW
                     GGTYCVTAYVGNVRFTRPVAVGHLVEATARLVHTGRSSMHILVSVSSSDPRDGALEPA
                     TECLMVFVAIDADRHSVAVPIWEPLNDLDRERQASAVRRIALRAKIEEAMAAQTYTDA
                     GTAPSVTLRFLAAPTDVNWGGNVHGGIVMRWIDEAAHILATKWTKSPDNVAVFVGGVR
                     FYRPLHIGHLVEVEARLLHTGPRSMHISVHVRSGDPATGRLEQTTHCLIVFVVRDEEG
                     HAKAVPGWQPSSPEDIALEHHALELIALRSQIPRP"
     gene            complement(3358..3711)
                     /locus_tag="VGN19_03115"
     CDS             complement(3358..3711)
                     /locus_tag="VGN19_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194907.1"
                     /translation="MPQLAPAAVLVVVRGIRPEGAVVGARFAGGRRLMVVGDVMGLPV
                     VDDEEAVRGAGAPGEHAAVSPSVTSPTTATRVRAVAAVRLLITRTYAVTPTPDTRGWL
                     THAAYIAIIHRVLNE"
     gene            3782..>4005
                     /locus_tag="VGN19_03120"
     CDS             3782..>4005
                     /locus_tag="VGN19_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HEV7194908.1"
                     /translation="MSSRALGDQVRAEGIGAVIYLGGWYGGTASVATVSARLQAAAGG
                     HLLIAADQEGGAVQQLRGPGFSSIPSARVQG"
BASE COUNT          610 a         1447 c         1307 g          641 t
ORIGIN      
        1 cgcgccgccg ccgccgccgc atggccgtca atcgtgaagc ccacctgcca ggtgcttccc
       61 cccgatttcc cgggctatcg gccctattgc ccctacacac tgcacccgaa ctcccgcggg
      121 tcctgggacg cgcctgactt cgtgaccgcg gagagactcg tcgccgaatc gcacacaaga
      181 ggcatgccgg taaccgtctg gtcagacccc cctcccgcgc ccggagtgga ggcggtcgtg
      241 cgggcgctgc gtgagctcgg ctacagggtc agcttcaagg tcggcaatcc cggtggcgac
      301 ttctccgcat acgtctccga ctcgcgccac caggtgcagg cctcgttctt cggctggatt
      361 tccgacgacc cgagtgtcga ggacttcatc cctccgcttt tcgcctgtgg ctccttctcc
      421 gtcggcaatc caaacaaccc caacaccacc gggttctgcg atccggacat cgacgcgctg
      481 atccggcacg ccgagcaagt cgagtcgacg tcgccgcatg ccgcgaacga tgtctgggcg
      541 ctggccgaca agcgcatcac ggacgcgtcg ccgtggatct cgctggtcaa tgcgtcctgg
      601 gtggacgcgg tatccaatcg tgtgcaccac tacgtcagga atcccgtgat tggtgtcctc
      661 ttcgaccaga tgtgggtcgt ctgacccgct catatactgc gatgtcatgg ctgactgcat
      721 cgaactctgg tcgcttggcc gggcgagcct ggtgctcctc gaagcccggc gcatgaccat
      781 cggtcgtggg ccagaaaacg acatcaccat cgcggatgcg gaagcttctg ccatccacgc
      841 agcgctggaa ccgctcgccg gggcgtggag cgtgcgcgac ctgagctccc gcaacggcac
      901 cttcgtcaac ggcgagcgcg tattgactga gcgcccactt cgccgtggcg acgagattcg
      961 catcggccgc tcccgcttgg tctaccgccc ggagtcgagc accactgcaa tcgacccgac
     1021 ggcaacaccg cgcggtgtcc ccgatcttac gaggcgcgaa cgggacgttc tgctggccct
     1081 tttcagcggg cgaatcccgg acgcggtctt cttcgagccc gcgaccacac acgaaatcgc
     1141 gacggagctg catgtgaccg atgcggccgt aaagcagcac ctggtcaggc tctatgacaa
     1201 gttcgccctc aggcttccga ccgagcgcac gcgtgcgcgc ctcgccaacg aagctctacg
     1261 acgaggcgtc atcagcgtcg cggacattcg ccccgccgac cgtgactagt ctcgacccat
     1321 gctgctcgcc catgacgacg agggttcagg tcccgcggtc gtgctgctcc acgccggggt
     1381 cgcagaccgg cggatgtggg atgccgtcat gccggcgctg gcacgcacct tcagggtgat
     1441 ccggcccgac ctgcgcgggt tcggcgacac gcctttgacg gcgggtgagt atgccgacgc
     1501 cgacgacgtg gacgccctgc tcgcctcgtt gggagtcacc gatggcgccg tggtcgggtc
     1561 gtccttcggg gggcgggtgg cgatggagct ggccatgctg caccctgctc gcgtgtcctc
     1621 cctggtgctg ctctgtccgg cctaccgcgg actggagccc accgagtcgg tgcggagctt
     1681 cggcgcagag gaggaccggc tcatcgaggc cggcgatgtc gagggtgcgg tcgacctcaa
     1741 cgtccgcacc ttcctcggcc ccgaggctgg gaccgccgcc cgtgcgctcc tgacccggat
     1801 gcagcgccgg gcgttcgagg tccagctcgc cgcgggcaag gcgaccccgg cccccgcgcc
     1861 gcgccgggtc gaggtcgacc ccaccgccat caccgtcccg acgctcaccg tgtccggggc
     1921 gcaggacctc gaccacttcc ggcagatcgc gatccatctg gcggggcaga tccccggcgc
     1981 ggagcacgtc gagttcgact gggccggcca tctcccggcc atggagcgcc ccgatgcgct
     2041 gctggccctg ttgctcgacg tcctgcgcga cgacccgacg gtgcacgcgc cctgaagatg
     2101 accagccaca accctgtcat cgcgtactca agaccgaggg ccgccatacg gcacgccacc
     2161 gtgtagcggg gtggacatgt acaccaacgc ttttcgtctc ggctcgttgg gtcccacggc
     2221 tcttggtgac accgctgaga gcgcggtgtg ttgcactctc ggacgatcct gcagacacag
     2281 tggcggggcg gtataacggt cccgtggttc ctgcccgctc cgtcaccctg cggttcctcg
     2341 ccgcccctac cgacgccggc tactccggca acgtgtccgc ggggcgggtg ctggagtgga
     2401 tcgacaaggc cggctatgcc gcagcggtcg ggtggggcgg cacctactgc gtcacggcat
     2461 acgtcgggaa tgtccgcttc accaggccgg tagccgtcgg gcacctcgtc gaggcgacgg
     2521 cgcgcctggt ccacaccggg cgcagcagca tgcacatcct cgtctcggtc agctcgagcg
     2581 atccgcggga cggcgcgctc gagccggcca cggagtgcct catggtgttc gtggccatcg
     2641 acgccgaccg ccactccgtt gcagtgccca tctgggagcc actgaacgac ctcgaccgcg
     2701 agcggcaggc gagcgccgta cgacggatcg cgttgcgggc caagatcgag gaggccatgg
     2761 ccgcccagac gtacaccgac gccggcaccg ccccgagcgt gactttgcgg ttcctcgcgg
     2821 caccgaccga cgtgaactgg ggcggcaacg tgcacggcgg catcgtcatg cgctggatcg
     2881 acgaggccgc ccacatcctg gcaacgaagt ggaccaagag ccccgacaac gtggctgtct
     2941 tcgtgggcgg ggtccgcttc taccggccac tgcacatcgg ccacctggtc gaggtcgagg
     3001 cgcgcctgct gcacaccggc ccgagaagca tgcatatcag tgttcacgtc cgatccggcg
     3061 acccggcgac cgggcgcctg gaacagacca ctcactgcct gatcgtcttc gtggtccgcg
     3121 acgaggaagg gcacgcgaaa gccgtgcccg ggtggcaacc gtcctcgccg gaggacatcg
     3181 ccctcgagca ccacgccctc gagctcatcg cgttgcgttc ccagatccct cgcccctaga
     3241 cggctgtgac gcagagcgtc gtccctcggg gttcacggag tgccatcgcc ccaaggcgac
     3301 tgcgcttgtc gacctcgcct ccaggggcta gacgctacgc ggactcccgc ccaacgccta
     3361 ctcgttcagg accctgtgga tgatggcgat gtatgccgcg tgggtcagcc acccgcgagt
     3421 gtcgggcgtg ggcgtgacag cgtacgttcg agtgatgagt agccggaccg cagccaccgc
     3481 ccgcacccgg gtcgcggtcg tcgggctcgt gacgctgggg ctcacggcag catgctcccc
     3541 tggggcgccc gcaccgcgaa ccgcttcctc atcgtccacc acgggcaacc ccatcacgtc
     3601 gcccaccacc atcagcctcc ggccacccgc gaagcgggcg cccaccacag caccctcggg
     3661 ccggatccca cggacgacga ccaagactgc ggccggcgcg agctgcggca cccggctggc
     3721 ggctgctatg acgcccgccc aacgcgcagg tcagctgctc atggtcgggt tgaagcccac
     3781 catgagctct cgcgccctgg gggatcaggt gcgcgccgag ggcattggag ccgtcatcta
     3841 cctgggcggg tggtacggcg ggaccgcctc ggtggcgacg gtgtccgcac ggctccaggc
     3901 cgctgcgggt ggccacctgc tcatcgcggc cgaccaggaa ggtggagcgg tgcagcagct
     3961 gcgcgggcct gggttctcca gcatcccctc agcgcgcgtc caggg
//
LOCUS       DASYFY010000166         8214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1064139, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000166 DASYFY010000000
VERSION     DASYFY010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8214
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1064139"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VGN19_03125"
     CDS             <1..204
                     /locus_tag="VGN19_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="LytR family transcriptional regulator"
                     /protein_id="HEV7194909.1"
                     /translation="YGDEGDLAAALLQEHVPRAQLVKDSRAGTGVDLVIGNAYTALTD
                     PANVPPLAPRAKPVAPTVARPCQ"
     gene            488..1207
                     /locus_tag="VGN19_03130"
     CDS             488..1207
                     /locus_tag="VGN19_03130"
                     /inference="COORDINATES: protein motif:HMM:NF024929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEV7194910.1"
                     /translation="MARSARHTSAVGLPGSVELAPVPLAGAEPTERFPNNAPAVGAGA
                     NATVLAVPDDVWARMAGVSWTPGCPIGRSQLRYVGVNFWGFDGKRSRGGLVVNSSIAG
                     ATAAAFTLLFGQQFRIRQMKPMDASWGRNPKGPGANDYAAMSADNTSAFNCRYVGGQE
                     ASRVYSKHAYGTAVDVNDFENPYVADDGTVYPQRYFLVRRGPAPGVFSSSSSPTVQAF
                     TNQGLRWGGLWSKPDYQHFER"
     gene            1561..2076
                     /locus_tag="VGN19_03135"
     CDS             1561..2076
                     /locus_tag="VGN19_03135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194911.1"
                     /translation="MLVNGLGSQATVRACRRSGSGYVMDLGPYYGHVGINGVSWSKRE
                     GDLKTPAGTFPLRGGFGIQANPGLAQDWFTVDANDVWVDDSSSSLYNTHERKPANGRW
                     TSAENLLKSPAYTYAQVIGYNEARTPGLGSAIFFHVDTGGGTAGCVSLPQGALLSVFR
                     WEGSNAVMSIS"
     gene            2155..3354
                     /locus_tag="VGN19_03140"
     CDS             2155..3354
                     /locus_tag="VGN19_03140"
                     /EC_number="2.7.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006002 - fructose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrophosphate--fructose-6-phosphate
                     1-phosphotransferase"
                     /protein_id="HEV7194912.1"
                     /translation="MTVRTVAMLTAGGLAPCLSSAVAGLIERYTEVAPEARILVYRNG
                     YAGLLTGDSVEVDEGVRASAHLLHRFGGSPIGNSRVKLTNVEDCLKRGLVKPGQDPLH
                     VAAEQLTRDRVDVLHTIGGDDTNGTAGDLAAYLSSHDYDLTVVGLPKTIDNDVVPIRQ
                     SLGAWTAAEQGAVFARHIVAENSSNPRMLVVHEVMGRNCGWLTAATALAHHQWVRGQE
                     FAGWLESSPQAWDVHGVFIPERPFDIAQEAKRLRAVMDEVGGVNLFISEGAGISEIVA
                     SLEQGGHEVPRDPFGHVQLDKVNPGAWFAKQFADELGAEKVLVQKSGYFVRSAPANEA
                     DLALIKSCTMYAVDAALRGESGVVGEDEERGDELRAIEFERIRGGKPFDPATSWFTEL
                     LADLGQA"
     gene            3368..5107
                     /locus_tag="VGN19_03145"
     CDS             3368..5107
                     /locus_tag="VGN19_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019309809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEV7194913.1"
                     /translation="MTETAGDAGNAASDTEARTAAYREARDTLVALAGQHERALAEFR
                     WPDLGERFNWAIDWFDAIARGNDRTALWIVEEDGSEQQVTFDAMATRSDKVAVWLSGL
                     GVHRGDRVLLMLGNQVELWETMLAVAKLGAVIMPTTAALGPDDLRDRVDRGEARVVVA
                     NHGDVAKFDEVPGDYLRVCVGEECAGWSRYGDAYEVVPRAFETATAATDPLLVYFTSG
                     TTSKPKLVEHTQVSYPVGHLTTMYWIGVRPGDVHLAISSPGWAKHAWSCFFAPWIAEA
                     TIFVYNYARFDASALLDQLRRVGVTTFCAPPTVWRMLIQSDLSGGSGRLRELLAAGEP
                     LNPEVIAQVQHAWDLTIRDGYGQTETTLQIGNIAGEELKPGSMGRPMPGVPVALVDPL
                     SGELASEGEIVLDLGQHPVNLMTGYLGDPDRQAEAMAGGYYHTGDVAQRDADGYITYI
                     GRTDDVFKASDYKVSPFELESVLIEHPAVAEAAVVPAPDPTRLAVPKAYIALAPGWEP
                     NAETAKAILGHARTHLAPYLRVRRIEFYELPKTISGKIRRVELRERERHAFEGGSSLS
                     EEYRDDQFPELKG"
     gene            5267..6514
                     /locus_tag="VGN19_03150"
     CDS             5267..6514
                     /locus_tag="VGN19_03150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194914.1"
                     /translation="MPVRSYPYAFHVALDGNGLNGLEGRAGVCLFRYDPATGDHAYKI
                     SYFAGASGGHAPNVDPSRRTGFLGNTGQHLLFYDLATLEEADRISTLRFEIPDTTIKG
                     STHLVWLDDTQFITSIGEHLWKFDLNRLTKAEEVAPHGLKIPHAMKRTASGRYIVYGG
                     MDHPVRGEAREVGILDTITGTVRRVELPTTCWHVVCHPVLDVFYAISFRVNPADRTDW
                     EHWGMAWLRQYAFEIDAEEGRVLRHWAADRDLPAHINSDVTISDSELIFCTGGSHTVV
                     FVDLLTLSQHRLIDEHPGAVESWALSRQSATTLTESFMRAGFFGNSHLFAESLRVSRG
                     ALLDGIYACQLSADQTLLFTANRGQNHITVYDYPSLELRDRVVMPELQEFDPRLASWG
                     DPRLGFHHSYLVSPDSTDTPGAP"
     gene            6514..6978
                     /locus_tag="VGN19_03155"
     CDS             6514..6978
                     /locus_tag="VGN19_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194915.1"
                     /translation="MADYSIDATINGGTPLHSDVTAGVTSTLTGLDDMKLTLAGGETA
                     TLAGGLTTTLAGENTVHSDATITLQPVTTSSTLTSTSTVDTTSSVDLKPVAVDTCVRL
                     ELAPPPATEVTTPYEQKWCWSILGLELFAITVRGSTSTHIRPEHHGPVMIDR"
     gene            6986..7654
                     /locus_tag="VGN19_03160"
     CDS             6986..7654
                     /locus_tag="VGN19_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194916.1"
                     /translation="MPAARRKSAKPPATPRDERSRLLVTGPPAQLRTTVTIENTADQQ
                     VAVRAAALHREGEPTVAGGVASLIPAGATVTVPVSFAVAAATAPGEYAAEVEVGGTRR
                     AAVVRVEPHLAMRVSPRRVLAGPGRQEVDLIVSNDGNLEVTVAALARARTEDGGPDPG
                     PEVSLVLDAPIVVAAASTASTTAQLDVPQGLDPTRRHTATIPVGLADLDVIILPRTAS
                     ESSS"
     gene            7651..>8214
                     /locus_tag="VGN19_03165"
     CDS             7651..>8214
                     /locus_tag="VGN19_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194917.1"
                     /translation="MSATAPPTAPEYLTAIRDGWAQAMQQWVDQSTSAWDQWAQWSQS
                     WGGAVPPLAGVGAQARWGPTKPGHHQHRRDHTHDHTPDHAPDHRHGRPPEHACGRCAD
                     SCDCCVPEADVVVHARAGEVRVVPFRLANRWRREREVTLAVGPWHVCSGRGLEVRGVL
                     EEEKVVLAPCEDRIVRLHLSVRGTVETG"
BASE COUNT         1302 a         2930 c         2754 g         1228 t
ORIGIN      
        1 tatggcgatg agggcgacct ggcggccgcc ctgctccagg agcacgtccc gcgcgcccag
       61 ctcgtcaagg actcccgcgc tgggacgggc gtggatcttg tcatcgggaa cgcctacacc
      121 gcactcaccg atcccgcgaa cgtgccgcca ctcgcaccac gcgccaagcc ggtggctccc
      181 acggtcgcac ggccttgcca gtgatccgga ctctggttgg gagctcggcc gggctccggc
      241 ccggccgctc ggactagacc ccatcggcgg gacacggcac agtggtgccc cgatgactgc
      301 ttgccgcgcc tcggcgcccc tgctgtacgc catgacctct ctgctcctga tgtccgcgtg
      361 tgcggctccc ccctcgacgc ccgtgaatgg cgccggcgcg accagcccta gttcgagggc
      421 gacctcgggc cctgccacga ctccgcctcg gcacgccacg agcacgacca cgaagccccc
      481 gccgcccgtg gcacgctcgg cgcggcatac ctccgccgtg ggtctccccg ggtccgttga
      541 gctggccccc gtgccgctcg cgggcgccga gccgacggag cggttcccca acaacgcacc
      601 cgcagtcggg gcgggtgcca acgccaccgt gctcgccgtc cccgacgatg tgtgggcgcg
      661 gatggcaggg gtctcgtgga cacctggatg ccccatcggg cgctcgcagc tgcggtacgt
      721 gggcgtgaac ttctggggat tcgacgggaa gcgctcgcgc ggcgggctgg tggtgaactc
      781 ctcgatcgct ggtgccaccg ccgcagcctt caccctgctg ttcgggcagc agttccggat
      841 ccgtcagatg aagcccatgg acgcctcctg gggtcggaac cccaaagggc ctggcgccaa
      901 cgactacgcg gcgatgtcgg ccgacaacac ctccgccttc aactgccgct acgtcggggg
      961 ccaggaggcc agccgcgtct acagcaagca cgcctacggc accgccgtgg acgtcaacga
     1021 cttcgagaac ccctacgtcg cggacgacgg cacggtgtac ccgcagcggt acttcctggt
     1081 ccgacgtggg ccagcgcctg gcgtgttctc ctccagctcg agcccaaccg tccaggcctt
     1141 caccaaccag ggcctgcgct ggggcggcct gtggtccaag cccgactacc agcacttcga
     1201 gcgatgaccg gccaacgccg caggtatgcc gctgggctgg gcctcgtggc cctgctcacc
     1261 gccggctcac tcgccgcctg ttcgcaccca ggccgacccg ccgcggcgac cagcgcgccc
     1321 agtgcgagtt cgtcgacgac ggccgcgacc acccctgtcg caaccaccgt cgtcaccccg
     1381 ccggcgcggg ccgcgacgcg acacgccccc ctcagggcga ccgcacagcc aaccccgatc
     1441 aggaccgtcg ttcgtcctgc ccccaccccc tccgccccct ctgcaaccct ccgtcagccg
     1501 gcgcctccca gcgggccgcc gagctgcgca gtcccgactg gtatcgcggc ctctcgggtc
     1561 gtgctggtca acggtctcgg gtcccaggcc acggtccggg cgtgccgccg gagcggatcc
     1621 ggttacgtga tggaccttgg cccgtactac ggccacgtcg ggatcaacgg agtcagctgg
     1681 tccaagcgtg aaggcgacct caagacccct gctggcacct tcccgctccg cggtggcttc
     1741 ggcatccagg ccaacccggg cctggcccag gactggttca cggtcgatgc caacgacgtg
     1801 tgggtcgacg acagctcctc cagcctctac aacacccacg agcggaagcc ggccaacggc
     1861 cggtggacgt cggcagaaaa cctgctgaag agcccggcct acacgtatgc ccaggtcatc
     1921 ggctacaacg aggcccgcac tcccggacta gggtccgcga tcttctttca cgtggacacc
     1981 ggaggaggca cggcgggctg cgtgtccctc ccacagggag cactgctttc ggtattccgg
     2041 tgggaaggca gcaacgccgt catgtccatc agctgacccg cgacgcgaga acccgcgtgc
     2101 cgcctccatg agatcccgct ggccgcgagc gagtggagtt ggcagagtga gcgcatgacc
     2161 gtgcgcaccg tcgccatgtt gaccgccgga ggattggccc cctgcctgtc atcggcggtg
     2221 gccgggttga tcgagcggta caccgaggtc gcacccgagg cgcgaatcct ggtgtaccgc
     2281 aacggctacg cgggcctgct cacgggggac agcgtcgagg tcgatgaggg cgtgcgcgcc
     2341 tcagcccacc tgttgcaccg gttcgggggc agcccgatcg gcaacagtcg cgtcaagctg
     2401 accaacgtcg aggactgtct caagcgcgga ctggtgaagc cggggcagga tcccctgcat
     2461 gtcgccgccg agcagctgac ccgcgaccgc gtcgacgtcc tgcacacgat tggtggggac
     2521 gacaccaacg gcacggcagg cgacctcgcg gcatacctgt cctctcacga ctacgacctc
     2581 acggtcgtag ggctgcccaa gacgatcgac aacgacgtgg tgcccatccg tcagtccctg
     2641 ggggcctgga ccgcggccga gcagggtgcc gtgttcgccc gccacatcgt cgctgagaac
     2701 tcctccaacc ctcggatgct ggtggtgcac gaggtgatgg gtcgcaactg cggctggctg
     2761 accgccgcca cggccctcgc ccaccaccag tgggtccggg gccaggagtt cgctgggtgg
     2821 ctggagagct cgccgcaggc gtgggacgtg catggggtgt tcatccccga acggcccttc
     2881 gacatcgccc aggaagccaa acgcctgcgg gctgtgatgg acgaggtcgg cggcgtcaac
     2941 ctgttcatct ccgagggtgc tgggatctcc gagatcgtcg cctcattgga gcagggcgga
     3001 catgaggtgc cacgcgaccc gttcgggcat gtccagctcg acaaggtcaa cccgggtgcc
     3061 tggttcgcca agcagttcgc ggacgagctc ggcgccgaga aggtactcgt ccagaagagc
     3121 ggctacttcg tgcgctccgc gccggccaac gaggccgacc tagcgctgat caagagctgc
     3181 acgatgtatg ccgtggacgc ggcactgcgc ggcgagtccg gtgtcgtggg cgaggacgag
     3241 gaacgcggtg acgagctgcg ggccatcgag ttcgagcgga tccgcggcgg aaagccgttc
     3301 gaccccgcga cttcctggtt taccgaactg cttgccgacc tcggccaggc gtagcaaggt
     3361 cgacgctatg acagagaccg ccggggacgc cggaaacgct gcgtcggaca ccgaagcccg
     3421 caccgcggca taccgagagg ctcgcgacac actggtggcg ctcgctggtc agcacgagcg
     3481 cgcgctcgcc gagttccggt ggcccgacct gggggagcgg ttcaactggg ccatcgactg
     3541 gttcgacgcg atcgcccggg gcaacgaccg gaccgcgctg tggatcgtcg aggaggacgg
     3601 gtccgagcag caggtcacgt tcgacgccat ggcgacccgc tccgacaagg tcgcggtatg
     3661 gctgtcgggg ctcggcgtgc atcgcggcga ccgcgtgctc ttgatgctgg gcaaccaggt
     3721 cgagctgtgg gaaaccatgc tggcggtggc caagctcgga gccgtcatca tgccgacgac
     3781 cgccgctctg gggcccgacg acctgcgcga ccgggtggat cgaggcgagg cccgggtggt
     3841 cgtcgcgaac cacggtgacg tggcgaagtt cgacgaggtc cccggcgact acctgcgggt
     3901 ctgcgtgggt gaggagtgcg ccggctggtc gcggtatggc gacgcctacg aggtggtgcc
     3961 gcgcgccttc gagaccgcga ccgcagccac ggacccgttg ttggtctact tcacgtccgg
     4021 caccaccagc aagcccaagc tggtcgagca cacgcaggtg tcgtacccgg tcggacacct
     4081 gaccacgatg tactggatcg gcgtgcggcc gggcgacgtg cacctggcga tcagctcgcc
     4141 gggctgggcc aagcacgcct ggtcctgctt cttcgccccg tggatcgccg aggccacgat
     4201 cttcgtgtac aactacgccc gcttcgacgc gtcggcactg ctggaccagc tccggcgggt
     4261 gggtgtgacg acgttctgtg cgccgcccac ggtctggcgc atgctcatcc agtccgacct
     4321 cagcggcggc agcggtcggc tgcgcgagct gctggcggca ggcgagccgc tcaacccgga
     4381 ggtcatcgcc caggtgcagc acgcctggga cctgacgatc cgggacggct atggccagac
     4441 cgagaccacc ctgcagatcg ggaacatcgc gggtgaggag ctcaagcctg gctcgatggg
     4501 tcgaccgatg cccggcgtcc ccgtggcgct ggtggacccg ctgagcggtg agctggcgag
     4561 tgagggtgag atcgtgctgg acctcggaca gcacccggtc aatctcatga ccggttacct
     4621 cggggatccg gaccggcagg ccgaggcgat ggctgggggc tactaccaca ctggcgatgt
     4681 cgcccagcgg gatgcggacg ggtacatcac ctacatcggg cgcacggatg acgtgttcaa
     4741 ggccagcgac tacaaggtgt cgcccttcga gctcgaaagc gtcctcatcg agcaccccgc
     4801 cgtcgccgag gcggcggtcg tcccggcgcc tgacccgacc cggctggcgg tgcctaaggc
     4861 ctacatcgct ctcgcgcccg gttgggaacc caacgcggag accgcgaagg ccatcctcgg
     4921 gcatgcccgc acccacctgg cgccctatct gcgggtgcgg cggatcgagt tctacgagct
     4981 gcccaagacc atctccggga agatccgccg cgtcgagctc cgggagcgcg aacgtcacgc
     5041 gttcgagggc ggctcgtcgc tgtcggagga atatcgggat gaccagttcc ccgagctcaa
     5101 gggctgacgg aaaccccgac aatcgtcgcg tagcgaccca aaagcgttgt ggatgaaggc
     5161 gaatggcggc actggaccat ccgcgggctc tatcggggct gttgggccct gagtaccgtg
     5221 tgatgggggg tccgtcaggg ccgccgggta accgagcagg ccggggatgc cagtgcggag
     5281 ctatccatac gcctttcacg tcgctctcga cggcaacgga ctcaacgggc tcgagggccg
     5341 ggcaggcgtc tgcctcttcc gctacgaccc cgccaccggg gaccacgcct acaagatcag
     5401 ctacttcgcg ggcgcctccg gcggacacgc ccccaacgtc gaccccagtc gtcgcaccgg
     5461 attcctggga aacaccggcc aacatctgct gttctacgac ctggccaccc tcgaggaggc
     5521 tgaccggatc tcgaccctgc gcttcgagat cccggacacc acgatcaagg gcagcacgca
     5581 cctcgtctgg ctcgacgaca cccagttcat cacctcgatc ggcgagcacc tgtggaagtt
     5641 cgacctcaac cggctcacca aggccgagga ggtcgcgccc cacgggctga agatcccgca
     5701 cgccatgaaa cgcacggcat ccggccgcta catcgtctac ggggggatgg accatcccgt
     5761 ccggggcgag gcgcgtgagg tcggcatcct cgacaccatc acggggacgg tccggcgcgt
     5821 cgagctgcct accacgtgct ggcatgtcgt ctgccatccg gtgctggacg tcttctacgc
     5881 gatctccttc cgggtcaacc ctgccgaccg caccgactgg gagcactggg gcatggcatg
     5941 gctgcgccag tacgcgttcg agatcgatgc cgaggaggga cgcgtgctgc gccactgggc
     6001 ggccgaccgg gacctgccgg cgcacatcaa ctcggatgtg accatctcgg actcggagct
     6061 catcttctgc acgggtggca gtcacaccgt ggtcttcgtg gacctcctca ccctcagcca
     6121 gcaccgcctg atcgacgagc accccggggc ggtcgaaagc tgggcgctga gccgtcagtc
     6181 ggccaccacc ctgaccgagt cgttcatgcg ggccggcttc ttcggcaact cccacctgtt
     6241 cgccgagtct ctgcgggtga gccgtggcgc gctgctcgac ggcatctacg cctgccagct
     6301 ctcggccgac cagaccctgt tgttcaccgc gaaccgtggt cagaaccaca tcaccgtgta
     6361 cgactacccc tcgctcgagc tccgcgaccg ggtcgtcatg ccggagctgc aggagttcga
     6421 tccgcgactg gcctcctggg gcgatccgcg actcggcttc caccactcgt acctcgtcag
     6481 ccccgactcg accgacacgc ctggagcgcc ctgatggccg actactcgat cgacgccacg
     6541 atcaacggtg ggaccccact tcactccgac gtcacggccg gggtgacctc gacgctcacc
     6601 ggcctcgacg acatgaagct caccttggcg ggaggcgaga cggcgaccct cgccgggggc
     6661 ctgacgacga cgctggctgg agagaacacc gtccacagcg atgcgaccat cacgctgcaa
     6721 ccggtgacga cgtcctccac gctgacctcg acctcgacgg tggacacgac ctcgagcgtc
     6781 gacctcaagc ccgtcgccgt ggacacctgc gtgcggctcg aactcgcccc accgccggcc
     6841 accgaggtca ccacgcccta cgagcagaag tggtgctggt cgatcctggg cctcgagctg
     6901 ttcgcgatca cggtgcgtgg cagcacgagc acgcacatcc gacccgaaca ccacggtccc
     6961 gtcatgatcg accggtgagc ctgcgatgcc tgctgctcga cgcaagtccg ccaagccgcc
     7021 agccacgccc cgtgacgagc ggtccaggct gctcgtcact ggccctccgg cccagctgcg
     7081 caccaccgtc accatcgaga acactgctga ccagcaggtg gcggtccgcg ctgccgccct
     7141 gcaccgagag ggcgagccga cggtcgccgg gggagtcgcc tcgctgatcc ccgccggcgc
     7201 caccgtgacc gttcccgtgt cgttcgcggt cgcggccgcg accgcgcctg gggagtatgc
     7261 cgccgaagtg gaggtgggcg gtacgcggcg ggcggccgtc gttcgggtgg agccgcacct
     7321 ggcgatgcgg gtgagcccgc ggcgggtcct cgcgggaccg ggtcgccagg aggtggatct
     7381 catcgtgtcc aatgacggca acctcgaggt caccgtggcg gcgctcgccc gagcccgcac
     7441 cgaggacggc ggcccggacc ccggtcctga ggtctccctg gtgctggacg cccccatcgt
     7501 cgtggccgcg gcgtccacgg caagcaccac cgcacagctg gacgtgccgc aggggctcga
     7561 tccgacccga cggcataccg ccaccatccc cgtcggcctg gccgacctcg acgtcatcat
     7621 ccttccccga accgcatcgg agtcatcgtc atgagcgcga cagccccacc gacagcaccg
     7681 gagtacctca ccgcgatccg cgatggctgg gcccaggcca tgcagcagtg ggtcgaccag
     7741 tccacctccg cctgggacca gtgggcgcag tggtcccaaa gttggggcgg tgcggtaccc
     7801 ccgctggcgg gagtgggggc gcaggcacga tgggggccca cgaagcccgg tcaccatcag
     7861 catcggcgtg accacacgca tgaccacacg cctgaccacg cgcctgacca tcggcatggc
     7921 cgcccgccgg agcacgcgtg tggtcgttgt gcggactcgt gcgactgctg cgtgccggag
     7981 gccgatgtgg tggtgcacgc acgggctggc gaggtcaggg tcgtgccgtt ccggctggcg
     8041 aaccgctggc gtcgtgagcg cgaggtcacg ctcgcggtcg gtccgtggca cgtctgcagc
     8101 ggccggggac tcgaagtgcg cggtgtgctc gaagaagaga aggtcgtgct ggcgccctgt
     8161 gaggaccgca tcgtgcggct gcacctctcg gtgcgcggca cggtggaaac gggc
//
LOCUS       DASYFY010000167         5119 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_170610, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000167 DASYFY010000000
VERSION     DASYFY010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5119
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170610"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2259
                     /locus_tag="VGN19_03170"
     CDS             <1..2259
                     /locus_tag="VGN19_03170"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEV7194918.1"
                     /translation="LLASAWSEDTTREVGEMLAEEAERQGIHVVLGPTINLHRSPLGG
                     RLFEAYSEDPLITGRLAAAYVQGLQAKGIGACLKHLVANESETLRNYMDSQVSERALR
                     EVYLLPFEIAVEDSNPWSIMAAYNNVNGVAATEQVHVNTEVVKGEWGWDGLLMSDWFA
                     TKTSAPAALGGLDLVMPGPDGPWGEALVRDVESGAVPEAVIDDHVCRLLRLADRVGAL
                     GTPREWPAESTAPDAPRRREQLRRLAAAGMVVLRNEGGVLPLGPGGTVALIGRHAVDT
                     VCMGGGSAQVNPPYQVSIAQGLGEAIGDQLTVVDGVEVRERARVADPSSVRDPDTGEE
                     GLHVDYLDVDGVVMSSEHSSVCEVATGWDDTLPRPTEQVRLSARLVGGGQMRLGVTGS
                     GSWRLAVDGREVGMADLAAGGADPGESMLKPPVWTVDVEAEPGALVEATLTVVRSEPQ
                     PGPDGSLSTLAHVIASGMGVKGLVVAAVPPDAAQTIGQAVDAARGAEVAVVVVGLTPE
                     QETEATDKHTLSLPGEQDALVAAVAAVASRTVVVVNAATPVLMPWAVNVDAILVVGLP
                     GQEGGHAVADALLGVQEPAGRLVTSWPAADGQAPAWDVEPTDLKLEYTDGTFIGYRGF
                     HAGRAPSPAHWLGEGQGYGSWDYESAQLLSSGPAPTVGVRIRNTSERTSREVVQVYLQ
                     PTEDDQPVRLVGWTAVDVAAGQSAEVEVVTDARMWRRWDAAAEGWTTLDAGGQLLVAR
                     GLGDIKATLALG"
     gene            2327..2995
                     /locus_tag="VGN19_03175"
     CDS             2327..2995
                     /locus_tag="VGN19_03175"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7194919.1"
                     /translation="MASVPHPPRRGPGRPKGPAGTGGATRERIVAAATELFAERGFHA
                     TPMTSIAEAAQLSQTGLMHHFPSKDALLAAVLEQRDVRDYAAVAALRPEPARGWDAFE
                     DTVELVRINADREAFVRLFTSLAGEAVDPEHPGHEWLGSHHAQAIAVLSRAIREAVED
                     GSADPATPGETIARQFVALMDGLQLQWLMDAANVDMAHDISEYLATVRARWQRDPKGS
                     SPSR"
     gene            3005..4354
                     /locus_tag="VGN19_03180"
     CDS             3005..4354
                     /locus_tag="VGN19_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEV7194920.1"
                     /translation="MTTARRDPAQSREILRLAVPAFLALVAEPLFLLADSAIIGHLGT
                     AQLAGLGVASATLITAANIFVFLAYGTTSIVARQLGAGSSRGALEAGVDGTWLAVGLG
                     AVTAVLVALNAAPLCRLFGASDEAVGYAVTYLRLSALGIPAMLVALAATGVLRGLQDT
                     RTPLVASVTGFSTNVVLNLVFVYGLGWGIAGSAWGTVIAQTGMAVGLVTVLISHARRA
                     GATLHPHPGRVLKAALTGIPLLVRTLALRAILLLTTWVAAGLGDVPLASHQVAATVWS
                     FLAFALDALAIAAQALTGRALGAGDVKGARAATTTMVRWGIWGGAVLGVILLALHTVL
                     PALFTRDPAVRSALASALVVVALGQPLSGFVFVVDGVLIGAGDGGWLAKAMAATLVLY
                     LPLAIWVHVTGRDLVSHGAPHAVAVLWVVFTAFMAIRACFFWWRIRGDRWVVTGAAR"
     gene            complement(4398..>5119)
                     /locus_tag="VGN19_03185"
     CDS             complement(4398..>5119)
                     /locus_tag="VGN19_03185"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEV7194921.1"
                     /translation="GGWDWERVVRAQYRVLSYRREVHDLSVDLETDGYELLELVERHG
                     LAGLPTSSSTAHVSAADSDGMVCAITASSGYGSGATVPGTGMTLNNCLGEPELNRLGL
                     HTLTPGTRLASNMAPTVARRDGGTALAIGSPGADRITTALQQVLGRLCLQHETLQDAV
                     DAPRAHVRFLDDGHPRVDHEEVEGSSSEVAQAAARLGLPSFSHGGPSMFFGGVGVAVV
                     HPDGSMEVAGDSRREAATRIV"
BASE COUNT          700 a         1828 c         1833 g          758 t
ORIGIN      
        1 ctgctcgcga gcgcctggag cgaggacacc actcgcgaag ttggcgagat gcttgcggag
       61 gaggccgagc gtcagggcat ccacgtggtc ctcggcccga ccatcaacct gcaccgctcg
      121 ccgttgggcg gccggctctt cgaggcgtac tccgaggacc cactgatcac tggccggctc
      181 gccgcggcat acgtccaggg cttgcaggcc aaggggatcg gggcctgcct caagcacctc
      241 gtggccaacg agtcggaaac cctccgcaac tacatggact cccaggtgag cgagagggcc
      301 ctgcgcgagg tctacctcct gccgttcgag atcgccgtcg aagactccaa cccctggtcg
      361 atcatggccg cgtacaacaa cgtgaacggg gttgccgcca cagagcaggt ccacgtcaac
      421 acggaggtgg tcaagggcga gtggggctgg gacggcctgc tcatgtcgga ctggttcgcc
      481 accaagacct ccgcgccggc ggcgctgggc ggcctcgacc tggtcatgcc cggccccgat
      541 gggccctggg gcgaagcgct ggtgcgcgac gtcgagtccg gtgccgtgcc cgaggcggtc
      601 atcgacgacc atgtatgccg cctgctccgg ctcgccgacc gggtcggagc tctcgggacg
      661 ccacgcgagt ggcccgccga gtccacggct ccggacgccc cccggcgtcg cgagcagctc
      721 cgccgactcg cggcggccgg aatggtggtc ctgcgcaacg aaggtggcgt actgccgctg
      781 ggcccaggcg ggacggtggc gctcatcggg cgccatgccg tggacacggt ctgcatgggc
      841 ggcggatccg cgcaggtcaa cccgccctac caggtcagta tcgcccaggg actgggtgag
      901 gcgatcggtg accagctcac cgtggtcgac ggggtcgagg tgcgcgagcg cgcccgggtg
      961 gccgacccct cctcggtgcg agaccccgac accggtgagg agggcctgca cgtcgactac
     1021 ctcgacgtcg acggtgtggt catgtcctcc gagcacagct cggtctgcga ggtagcgact
     1081 ggctgggacg acacgttgcc gcgacccact gagcaggtcc ggctgtccgc ccgtctggtc
     1141 ggagggggcc agatgcggct gggtgtcacc gggagcggct cctggcggct ggccgtggac
     1201 ggtcgcgagg tcgggatggc cgacttggcc gcggggggag ccgacccagg cgagtcgatg
     1261 ctcaagcctc cggtctggac cgtcgacgtg gaggcggagc cgggtgcgct cgtggaggcc
     1321 acgctcaccg tggtgcgctc cgaaccacag ccgggacccg acgggtcact gagcaccctg
     1381 gcccacgtca tcgcgtctgg catgggggtc aagggtctgg tcgtcgccgc ggtgccccca
     1441 gacgccgccc aaaccatcgg gcaggccgtc gacgcggccc ggggcgccga agtcgccgtc
     1501 gtcgtggtcg gcctgacccc cgagcaggag accgaggcca ccgacaagca caccctgtcg
     1561 ctgcctggtg agcaggacgc cctggtcgcc gccgtcgccg cggtggcctc ccgcacggtg
     1621 gtcgtggtga acgccgccac cccggtgctc atgccctggg ccgtcaacgt ggacgccatc
     1681 ctggtcgtgg gactcccagg acaggagggg ggtcacgcag tggccgacgc cctgctgggg
     1741 gtccaagagc cggccggccg gctggtcacc tcctggccgg ccgcagacgg acaggcgccg
     1801 gcctgggacg tcgagccgac cgacctcaag ctggagtaca ccgacggcac gttcatcggg
     1861 taccgaggct tccacgcggg tcgggccccg agcccggcac actggctggg tgagggccag
     1921 ggctacggct cctgggacta cgagtcggct cagcttctgt cgtccggccc ggcgccgacc
     1981 gtcggcgttc ggatccgtaa cacctcggag cggacctcgc gtgaggtcgt ccaggtctat
     2041 ctgcagccga ccgaggacga ccagccggtg cgcctcgtgg gctggaccgc cgtcgacgtc
     2101 gcggcggggc agtcggccga ggtcgaggtc gtaaccgacg cccgcatgtg gcggcgctgg
     2161 gatgcggccg ctgagggctg gaccactctc gacgcgggcg ggcagctcct cgtggcgcgt
     2221 ggcctgggcg acatcaaggc cacccttgcg ctcggctgag cgcctgcggc agggctctga
     2281 gcgcccgcgg caaggtaccg ggcgcgcccg gcatagagtc ggggccatgg cctcggtccc
     2341 ccacccacca cgtcgggggc cgggccgacc caagggcccg gcgggcaccg gcggagccac
     2401 ccgcgaacgg atcgtcgccg ccgccacgga gctcttcgcc gagcgcggct ttcacgcgac
     2461 gccgatgacg agcatcgcgg aggccgccca gctgagccag accggcctca tgcaccactt
     2521 cccgtccaag gacgcgctgc tcgccgccgt gctcgagcaa cgcgacgtgc gtgactatgc
     2581 cgccgtggca gcgctgcgcc ctgagcccgc ccgggggtgg gacgcgttcg aggacaccgt
     2641 ggagctggtc cggatcaacg cagaccgcga ggcgttcgta cgcctgttca ccagcctggc
     2701 cggtgaggca gtcgacccgg aacaccccgg gcacgagtgg ctgggcagcc accacgcgca
     2761 ggccatcgcg gtgctgtcgc gggcgatccg agaggcggtc gaggatggat ccgccgaccc
     2821 ggccaccccc ggggaaacga ttgcccgcca gttcgtcgcc ctgatggacg gcctgcagct
     2881 gcagtggctg atggatgcgg cgaacgtcga catggcccac gacatctccg agtatctggc
     2941 gacagtccgg gcccggtggc aacgcgatcc caagggcagc tcgccgtctc gatagcgtga
     3001 acgggtgacc acagcgcgcc gcgacccggc ccaaagccgg gagatcctgc ggctcgcggt
     3061 tcccgcgttc ctggcgctgg tcgccgagcc gctctttctg ctcgccgact ccgcgatcat
     3121 cggccacctc gggaccgccc agctggcggg gctgggcgtg gccagcgcaa cgctcatcac
     3181 ggccgccaac atcttcgtct tcctggccta cgggacaacc tcgatcgtgg cgcggcagct
     3241 gggggccggg tcctcgcgcg gcgccctcga ggcgggagtc gacgggacct ggttggcggt
     3301 gggcctgggc gccgtcaccg cagtcctcgt tgcgctcaac gctgcgccgt tgtgccgact
     3361 gttcggcgcg tccgacgaag ccgtcgggta tgccgtgacg tacctgcgcc tgtctgccct
     3421 cggcatacct gccatgttgg tggccctggc cgccacggga gtgctgcgcg ggctgcaaga
     3481 cacgcgaacc ccgctggtcg cctcggttac cggcttctcc accaacgtcg tgctgaacct
     3541 cgtgttcgtg tacggccttg ggtggggcat tgctggatcc gcctggggga ccgtcatcgc
     3601 ccagaccggc atggcagtcg gactggtaac cgtgctcata tcccacgcgc gccgggccgg
     3661 cgccaccctg caccctcatc ctggtcgggt gctgaaagct gcgctgaccg gcatacccct
     3721 gctggtgcgc accctggcgc tgcgcgcgat cctgctgctg acgacctggg tggcggccgg
     3781 gctcggggac gtgccgctgg cttcgcacca ggtggcggcg accgtctgga gcttcctcgc
     3841 gttcgccctg gacgcgctcg ccattgccgc ccaggccctc accggtcgcg cgctgggagc
     3901 aggcgatgtg aagggcgccc gcgcagccac caccaccatg gtccggtggg gcatctgggg
     3961 cggcgcggtc ctcggcgtca tcctcctggc gctgcacacg gtgttgcctg cactattcac
     4021 tcgggacccg gccgtgcggt ccgccctggc gagcgccctg gtggtcgtgg ccctggggca
     4081 gccactgtca ggtttcgtct tcgtcgtcga tggcgtgctg atcggagcgg gtgacggcgg
     4141 ctggctggcc aaggccatgg cggcgaccct cgtgctgtac ctgcccttgg cgatctgggt
     4201 tcacgtcacg ggccgggacc tcgtcagcca cggcgccccg catgctgtcg ccgtcctttg
     4261 ggtggttttc acggcgttca tggccatccg ggcgtgcttc ttctggtggc gaatccgggg
     4321 tgaccgctgg gtcgtcacgg gcgcagcccg atagacgcct cggggaggca accgcccgcc
     4381 tcgaggcgcc gccgccctca gacgatccgg gtggcagcct cgcgacggga gtctcccgcg
     4441 acctccatcg acccgtccgg gtgcaccacc gccacgccaa cgcccccgaa gaacatcgac
     4501 ggaccgccat gcgagaacga cgggagcccg agccgagccg ctgcctgcgc cacctccgag
     4561 gagctcccct cgacttcctc gtggtcgacg cgcggatggc cgtcgtccag gaaccgcacg
     4621 tgagccctag gggcatccac agcgtcctgg agggtctcgt gctgcaggca gagtcgaccc
     4681 aacacctgct gcagcgcggt cgtgatgcgg tcggcccccg ggctgccgat ggccagggcc
     4741 gtccccccgt cgcggcgggc gaccgtcggg gccatgttgg aagccaggcg cgtgcccggc
     4801 gtcagcgtat gcaggcccaa gcggttgagc tcgggttcgc ccaggcagtt gttgagcgtc
     4861 atgccggtgc ccggcaccgt ggcccccgac ccatatccgc tggaggcggt gatcgcgcag
     4921 accatcccgt cgctgtcggc ggccgagacg tgcgccgtcg aggacgaggt cggcagtcca
     4981 gcgagcccat gacgttcgac gagctccagc agctcgtacc cgtccgtctc caggtcgacg
     5041 gacaggtcgt gcacctcccg gcggtacgac agcactcgat actgggcccg cacgacgcgc
     5101 tcccagtccc agccgccca
//
LOCUS       DASYFY010000168         1843 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1274509, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000168 DASYFY010000000
VERSION     DASYFY010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1274509"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..758)
                     /locus_tag="VGN19_03190"
     CDS             complement(21..758)
                     /locus_tag="VGN19_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013600180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEV7194922.1"
                     /translation="MDADIHFYFDPVCPFAWMTSKWVRQVQAHRDYTVDWRFISLRLV
                     NAEIDYDAHFPPEYEAGHTAGLRLLRVAARARAEHGREAVGRLYSAFGAQIFDTAPER
                     DEPRGEREVRERRGTREFVEPILARAGLPVELATAVDDESWDVEIRQETDEALSLTGK
                     DVGTPIIHFEPPTGVAFFGPVISRLPQEDAAVELWDHVVGLAGFPGFAELKRSLRERP
                     QLASFGVIDGQAGRQEDWHGGSRRPRK"
     gene            1203..1595
                     /locus_tag="VGN19_03195"
     CDS             1203..1595
                     /locus_tag="VGN19_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010078471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7194923.1"
                     /translation="MEEDSGARNEARAVDPRAVASARVRVPSPEDCDRLGAVLSLIAG
                     PTRIRLLYALDTAEELCVGDLALVLSASEDSVGYGLRVLRTAGLVTRRKEGRTVYYRL
                     TDGFPELLRSDCLRQLVHLSRTTAYGGA"
     gene            1643..>1843
                     /gene="ndhC"
                     /locus_tag="VGN19_03200"
     CDS             1643..>1843
                     /gene="ndhC"
                     /locus_tag="VGN19_03200"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEV7194924.1"
                     /translation="MYLGVALLLLATAVGLALLLLVARAVAVSPEALPVLPFQSGHAP
                     TEHALSRFHVRWYPATLVFLAFD"
BASE COUNT          271 a          669 c          609 g          294 t
ORIGIN      
        1 acggggttgg gccgcctggg tcacttcctc ggacgtcggc ttccgccgtg ccaatcctcc
       61 tgacgcccgg cctgaccgtc gatcacgccg aagctggcga gctgcggtcg ctcgcgcaag
      121 ctgcgcttga gctccgcgaa gccggggaac ccggccagcc ccacgacgtg gtcccacagc
      181 tcgaccgcgg cgtcctcctg cgggagacgg ctgatcaccg ggccgaagaa cgccacacca
      241 gtgggcggct cgaagtggat gatcggcgtg cccacgtcct tccccgtcag cgacagcgcc
      301 tcgtcggtct cctgacggat ctcaacatcc catgactcgt cgtccaccgc ggtcgccagc
      361 tcgacgggca ggcccgcccg agccaggatc ggctccacga actcgcgggt cccgcggcgc
      421 tcacgcacct cgcgctcacc tcgcggctcg tcgcgctccg gcgccgtgtc gaagatctgc
      481 gccccgaacg cggagtacaa ccgccccacc gcctcacggc catgctcggc ccgtgcccgg
      541 gcggccaccc gcaggagccg cagccccgcg gtgtgccccg cctcgtactc gggcgggaag
      601 tgcgcgtcat agtcgatctc cgcgttgacc aggcggaggg agatgaaccg ccagtccacc
      661 gtgtagtcgc gatgggcctg cacctgccga acccacttgc tcgtcatcca cgcaaaggga
      721 cagaccgggt cgaagtagaa atgaatgtcc gcatccattt ctccaccata tgaccgccgt
      781 atgccgtcac cgtctccacc cgcatcgacc acggggcgag tgtgagtccc attgggtggt
      841 ctctcacgat gagccgggcc cgtcgtgggc atctggacct cgaagggtcg tcagtggcga
      901 gcacgtcgag ctgctgacgg aggggccagg gcgccagccg cggctggcgt actcctgccc
      961 ccagcccatc gacgaggtct gggatcccgg ctgggtcggg ggcgaacaca tcgtcgacgt
     1021 ccacgtcgcg cacctgcgcc gcaggacggc gacgaccccg cgagtccccg tgacatcgac
     1081 accgtcagag gtgtgcgttg ccgcacgggc accggttgac cgacgcctcg gcgcggccgt
     1141 gcagaagccc aggcttctcg gctgggcgct cgtccgcaca ctcgtgtggg tatgcggatg
     1201 tggtggagga agacagcgga gcccgcaacg aggcacgcgc ggttgacccg cgcgcagtgg
     1261 cctctgcgag agtccgggtt cccagccccg aggactgtga ccgactcggc gcagtcctgt
     1321 ccctgatcgc cggcccaacc aggattcgcc tgctctatgc cctcgacacg gcggaagagc
     1381 tgtgcgtcgg agaccttgcg ctggtcctct ctgcgtcgga ggactccgtc ggctatggcc
     1441 tccgggtgct gcggacggca gggctcgtca cgcgccgcaa ggagggccgc acggtttact
     1501 accgcctgac cgacggcttc ccggagctgt tgcgctcgga ctgcctccgt cagctggtgc
     1561 acctttcccg cactaccgca tacgggggag cctgaatgga agctcgtccg cggagcgggc
     1621 cacaggagac ctgggagacg acgtgtacct cggggtagcg ctgctgctgc tggcgacagc
     1681 agtcggactg gccctgctcc tgctcgtcgc ccgcgcggtc gcggtgagtc cagaagcgtt
     1741 gccggtgctg ccgttccagt ccgggcacgc acccacggag catgccctct cgcgcttcca
     1801 tgtgcggtgg tatcccgcga ccctggtctt cctcgccttc gac
//
LOCUS       DASYFY010000169         2476 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_591046, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000169 DASYFY010000000
VERSION     DASYFY010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_591046"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(12..308)
                     /locus_tag="VGN19_03205"
     CDS             complement(12..308)
                     /locus_tag="VGN19_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194925.1"
                     /translation="MDDFPFGGVVDPRDVAYEAQADQVRVEVWEGVAPGHGGTCTAYA
                     GPIEHLAAILAWQQDNPTLHINVGVTVRFNAQVVLVKVAQHSATAADNLSKSAE"
     gene            complement(366..845)
                     /locus_tag="VGN19_03210"
     CDS             complement(366..845)
                     /locus_tag="VGN19_03210"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HEV7194926.1"
                     /translation="MKGRTSRWATRACIRHGETGQIALLTLGFTVLAMALILGTVAVT
                     SVQLSRLRLLDAADGAALDAANSLDSRVYHQGLGASVGISSATVRRTAGQYLAERPRP
                     PSLLGWHLAPGTGSPDGQTAVVRISGEADVPFVGGLLSSLGGSVTITVESRARAPVR"
     gene            complement(842..1339)
                     /locus_tag="VGN19_03215"
     CDS             complement(842..1339)
                     /locus_tag="VGN19_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein"
                     /protein_id="HEV7194927.1"
                     /translation="MSALTAALRRRMVRCRRTVQCGRGTGERGSALVEFVFLSVLVMV
                     PLLYLVLTLSRLQAGAYAVSAAAREAGRAYVTAASARDAPGRAEAAARLAFEDQGFRS
                     AESRLSLSCDGSPCLRPAGRVTLVASVRVPLPLVPGFARAAIPLEVSVTASHVAVVDP
                     FRGLP"
     gene            complement(1336..1728)
                     /locus_tag="VGN19_03220"
     CDS             complement(1336..1728)
                     /locus_tag="VGN19_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HEV7194928.1"
                     /translation="MRRAADPPREAGAAVADFVLVGSLLVVLFVGVLQVGLSLYVRNT
                     LISCSSEGARLGARADANPADGIARTRALIDASLPRQFASDVTAQVVQVDGIRVLSVR
                     VRAPLPVIGLLGPARGFDVVGRAFLERQ"
     gene            complement(1732..1932)
                     /locus_tag="VGN19_03225"
     CDS             complement(1732..1932)
                     /locus_tag="VGN19_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194929.1"
                     /translation="MLQTLTEATIRLGYSCRNAAHRRERGDVPGWVLITLMTAGLVAA
                     LWAVAEGQLTSLFSRALDSARR"
     gene            complement(1969..>2476)
                     /locus_tag="VGN19_03230"
     CDS             complement(1969..>2476)
                     /locus_tag="VGN19_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEV7194930.1"
                     /translation="GGIAGVVARDRWLSREATLRERRMLIEFPTIAELLALAVGAGEG
                     AVGALERVCRLSQGELSGELARCLADARAGANLPDALLGLADRTGLPSLARFVDGMVV
                     AVERGTPLAEVLRAQAQDVREAGRRAVLEAGGRKEIAMMIPVVFLVLPVTVLFAVFPG
                     FSFLQFSV"
BASE COUNT          448 a          871 c          832 g          325 t
ORIGIN      
        1 ctgcggccgg actactccgc ggacttcgac aggttgtctg cggccgtggc tgagtgttgg
       61 gcaaccttga cgaggaccac ctgggcgttg aagcgcaccg tgacaccgac gttgatgtga
      121 agggtggggt tgtcctgctg ccacgccaag atcgcggcca ggtgctctat cggccccgcg
      181 taggccgtgc aagtcccgcc gtgacctggc gcgactcctt cccatacttc gactcggacc
      241 tgatcggcct gcgcctcgta tgcgacatcg cgcgggtcga cgactccgcc aaacggaaaa
      301 tcatccacga ccgctcctcc caaaatgtga cgtcgcgaag tcctgacgag agcaagtcca
      361 gcgggtcatc gcactggggc tcgagcacgc gactccaccg tgatggtgac cgagccaccc
      421 agtgacgaca agagcccacc gacgaacggc acgtcagcct cgccgctgat gcgcaccacc
      481 gcggtctgac cgtcgggact ccccgtgccc ggcgcgagat gccagccgag caagctgggt
      541 ggtctgggac gctcagccag atactggcca gcggtgcgcc ggacggtcgc cgaactgata
      601 ccgacggatg ctccgagacc ttggtgatag acccgggagt cgagggagtt ggctgcgtcc
      661 agagccgctc cgtcggccgc gtcgagcagc cgcagccgtg acagctgcac agaagtcacc
      721 gcgacggttc ccaggatcag ggccatcgcg agcacggtga agccgagggt gagcagggcg
      781 atctggccgg tctccccgtg gcggatgcac gccctggttg cccaccgact ggttcgacct
      841 ttcatgggag cccacgaaac gggtcgacca cagccacgtg gctggccgtc actgaaacct
      901 ccaaggggat cgccgctcgc gcgaacccgg gcacgagcgg aaggggaacg cggacgctgg
      961 caaccagcgt cactcggcct gccgggcgta ggcagggaga gccgtcgcac gacagggaca
     1021 ggcgcgactc cgcgctccgg aatccttggt cctcgaaggc caggcgcgcg gcggcctcag
     1081 cgcggccggg cgcatcgcgt gccgaagccg cagtcacgta ggccctgccc gcctcgcgcg
     1141 cggcggcgga cacggcatac gccccggcct ggaggcgact cagggtgagc acgaggtaga
     1201 gcagcgggac catcacgagc accgagagga agacgaactc gaccagggcg cttccccgtt
     1261 cgcccgtgcc gcgcccgcac tgcaccgttc gtcggcaccg gaccatccgc cggcggagcg
     1321 ccgccgtgag cgcgctcact ggcgttccag aaatgcgcgg cccaccacgt caaaccctct
     1381 ggcgggcccc aacagcccga tgaccggaag gggtgccctc acccgcaccg acaagacccg
     1441 tatgccgtcg acctgcacga cctgggccgt gacgtcgctg gcgaactggc gcggcagcga
     1501 tgcgtcgatg agagctcggg tccgggcgat cccatcagcc gggttggcgt cagcccgggc
     1561 gccgagtcgg gcgccctccg atgaacagga gatcagggtg ttgcgcacgt agagggacag
     1621 cccgacctgc aggacgccga cgaacagcac cacgagaaga gagccgacca ggacgaagtc
     1681 ggcgacggct gcgccggcct cccgcggtgg atctgcggcg cgacgcatgg ctcagcgtcg
     1741 tgcgctgtcg agggctcggc tgaacaggga cgtcagctgc ccctcagcga ccgcccagag
     1801 cgcggccact aggccggcgg tcatcagggt aatcaggacc caccctggaa cgtccccacg
     1861 ctcgcggcgg tgagcggcgt ttcgacagct gtagcccaga cgaatggtgg cctcggtgag
     1921 cgtttggagc attgtgttca tggactttcc tctcggtggg cggatatctc agacggagaa
     1981 ctgaagaaac gagaacccag gaaaaaccgc gaacagcact gtgaccggca agacgaggaa
     2041 gacgaccggg atcatcatcg cgatctcctt gcggccccct gcctccagca cagcccggcg
     2101 cccggcctcg cgaacgtcct gcgcctgggc gcgcaggacc tcggccagtg gagtgccccg
     2161 ctccaccgcg accaccatgc cgtccacgaa gcgggccagg ctgggtagtc cggtgcggtc
     2221 cgccaaaccc aggagggcat cgggcaggtt cgcaccggcg cgggcgtcgg caaggcaccg
     2281 tgccagctca cccgaaagct cgccttgcga aagccgacag acgcgttcca acgccccgac
     2341 cgcaccctcc ccagccccga ccgccagggc gagcagctcc gcgatcgtgg ggaactcgat
     2401 gagcatgcgc cgctcccgaa gggtggcctc ccggctcagc caccggtccc gcgctacgac
     2461 acccgcaatc ccgccg
//
LOCUS       DASYFY010000170         4195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1327562, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000170 DASYFY010000000
VERSION     DASYFY010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4195
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1327562"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(283..1740)
                     /locus_tag="VGN19_03235"
     CDS             complement(283..1740)
                     /locus_tag="VGN19_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protealysin inhibitor emfourin"
                     /protein_id="HEV7194931.1"
                     /translation="MAQISSVRPCSIVPPYLLEALAQHADASIADLARRSLDQDRHLR
                     HTRTASPPRTSSTSDHPVEHLAGLAAPHVDDGHSPQRTIADAHVTQTTPGTTVRREGA
                     PASGDPAVDEAYDGFGQTWALYHDVFGRDSLDNRGLPLLGTVHYGANYDNAFWDGTQM
                     VFGDGDGTVFQRFTIAVDVIGHELTHGVTEYTAALDYQGQSGALNESVSDVFGSLVKQ
                     RALGQSATDADWLIGEGLFTPAVHGVALRSMKAPGTAYDDPHLGRDPQPATMAGYVQT
                     TDDNGGVHLNSGIPNHAFQLAATAIGGQAWEGAGQIWYDVLTGGRIPHDCDFATFATA
                     TLAAAEKRFGAGSAQAVAVGDAWNQVGVAVGSAPVGSAPVGSSPAGSGGAAAPGGSVD
                     QAVLRLRRSGGLAGIPQERTVALDDLPDPDAHDWRDLLAGDGLNLLAAEPQQRSVPDA
                     FVYHVAYPPDGDEVTVSEHGIPEAVRTLFQRTLGA"
     gene            complement(1824..2408)
                     /locus_tag="VGN19_03240"
     CDS             complement(1824..2408)
                     /locus_tag="VGN19_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HEV7194932.1"
                     /translation="MTERKDDHGEGSGGEDPAAEGASTDATAVDNGLVDDAALAALKR
                     ARAAAREKGLRPGLKPMRARRPGVPSRPTRTDGRDPQLLGDQLDRMMVDRGWEVDVAV
                     GSVMGRWPAIVGPEVAQHCTPVTFEFGVLTVRADSTAWMVQLQLLEATVMGRLEGEAG
                     KGTVTALKIVGPSAPSWSRGPRRSLGPGPRDTYG"
     gene            complement(2401..3597)
                     /gene="recF"
                     /locus_tag="VGN19_03245"
     CDS             complement(2401..3597)
                     /gene="recF"
                     /locus_tag="VGN19_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEV7194933.1"
                     /translation="MHVRHLSVADFRSYVAAELPLEPGITTLVGLNGQGKTNLVEAIG
                     YLATLSSHRVATDQPLVRFGAEQAVIRGAVVRDGRETLVELELNPGRANRARLGRSPV
                     TRPREVLGTLRTVLFAPEDLALVKGDPSERRRFIDDLLVARQPRWAGVRADYDKILRQ
                     RNALLKSAQPVLRRGSRPRSRPADEPVDDARASALNTLDIWNDHLSTVGSQLLYARLR
                     LLRDLGPYLSKAYDEVSAGQSDARVSYRSSLREDAATRIAGGDVPEADELRDELLATL
                     ADVRDREVERGVSLAGPHRDDLVFALGELPAKGYASHGESWSFALGLKLAAYQLLRHD
                     LGDDPVLVLDDVFAELDTGRRERLAAMIADCEQVLITAAVDADVPSSLIGRTYAVSLG
                     EVTRRD"
     gene            complement(3649..>4195)
                     /locus_tag="VGN19_03250"
     CDS             complement(3649..>4195)
                     /locus_tag="VGN19_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="6-phosphogluconate dehydrogenase"
                     /protein_id="HEV7194934.1"
                     /translation="AANVKRAMPIFDALRPEGPRDEGFVHAGKVGAGHYAKMVHNGIE
                     YGLMAAYAEGYELLEAKDIVTDVPGAFKAWTRGTVVRSWLLDLLVDALEKNPHLDDVS
                     GYTVDSGEGRWTVEEAIANSVPMPVISASLFSRFASRQKESPTMQAVAALRGGFGGHQ
                     VMTVDEGVKLRDAGSPKREKP"
BASE COUNT          617 a         1480 c         1461 g          637 t
ORIGIN      
        1 ggacacggtg ctccttctct gatggcatgc cggaacaggg gctagaaaat cgcggatccc
       61 tgtctcggtg cctgctcatg gttcgcgacc agactggaga ccagctggcc gcgaattcac
      121 ctcatagtct acctgtcgcc gctccaccag ggcacgtcag gaggcccgtg agcgcgtatt
      181 tcgggcaaat aatcgcggtg ggacggtccc cggtacgtga ccggccccct cagcgcccaa
      241 ttctggcctt cctgagggac ggaccccggt cctgtgagcg gctcaggcgc ccagggtgcg
      301 ctggaacagc gtgcgcaccg cctccggtat gccgtgctcg gacaccgtga cctcgtcacc
      361 atccggcggg taggccacgt ggtacacgaa ggcgtccggg acagacctct gttggggctc
      421 cgctgccagc aggttcaggc cgtcaccggc cagcaggtcg cgccagtcgt gggcgtcggg
      481 gtcgggcagg tcatccaggg cgacggtgcg ctcctggggg atccccgcca ggccgccgct
      541 gcgcctcagc cggagaaccg cctggtcgac cgacccccca ggcgcggcgg ctccacccga
      601 gccggcaggg ctcgacccaa cgggcgccga cccaacgggc gccgacccaa cggcgacccc
      661 cacctggttc cacgcgtcgc cgacagcgac ggcctgcgcg gacccggcac cgaaccgctt
      721 ctcggcggcc gcgagggtgg cggtcgcaaa ggtggcgaag tcgcagtcgt gcgggatccg
      781 gccgcccgtc aggacgtcgt accaaatctg gccagccccc tcccacgcct gacccccgat
      841 ggcggtggcg gccagctgga aggcgtggtt cggaatgccg gagttcaggt gcaccccgcc
      901 gttgtcgtcg gtcgtctgga cgtagcccgc catggtcgct ggctgggggt ccctgcccag
      961 gtgcgggtcg tcatacgcgg tgcccggcgc cttcatcgaa cgcagggcaa cgccgtgcac
     1021 cgctggggtg aacagcccct ccccgatgag ccagtcggcg tcggtagcac tctgccccag
     1081 cgcccgctgc ttcaccagcg agccgaacac atcggacacc gactcgttca gtgccccgga
     1141 ctgcccctgg tagtccagcg ccgcggtgta ctcggtgacc ccatgggtca gctcgtggcc
     1201 gatgacgtcc accgcgatgg tgaatcgctg gaagacggtg ccgtcgccat cgccgaagac
     1261 catctgggtg ccgtcccaga aggcgttgtc gtagttcgcc ccatagtgga cggtgcccag
     1321 cagcggcagc ccccggttgt cgagggagtc cctgccgaag acgtcgtggt agagcgccca
     1381 ggtctggccg aacccgtcat aggcctcgtc cacagcgggg tcgccgctgg ctggcgctcc
     1441 ctcgcggcgg accgtagtgc ccggggtcgt ctgggtgacg tgcgcgtcgg cgatggtgcg
     1501 ctgcgggctg tgcccgtcgt cgacgtgcgg ggcggccagg ccggccaggt gctccacggg
     1561 atggtcggac gtggacgagg tgcgcggcgg ggacgccgtg cgggtgtgcc gcagatggcg
     1621 gtcctggtcc agcgaccgac gtgcgaggtc cgcgatagag gcgtcggcgt gctgcgcaag
     1681 cgcctccaac aggtacggcg ggacgatgct gcagggacgg acactcgaga tctgagccat
     1741 gaagtcagtt aactcccgac gactgaccgc cgccacggct aacaagagcc ctgtggataa
     1801 gtcgacctga gctcagcgcg agctcagccg taggtgtctc gtgggcctgg acccaggctc
     1861 cggcgcggcc cgcgcgacca cgacggggcg ctcgggccca cgatcttgag cgcggtcacc
     1921 gtccccttgc ccgcctcacc ctcgaggcgg cccatgaccg tggcctcgag cagctgcagc
     1981 tggaccatcc aggctgtcga gtcggcccgc accgtcagca ccccgaactc gaacgtcacc
     2041 ggggtgcagt gctgggcgac ctcggggccg acgatcgcgg gccagcgccc catcacggac
     2101 cccaccgcca catcgacctc ccagccccgg tccaccatca tccggtcgag ctggtcaccg
     2161 agtagctgtg ggtcgcgccc gtcggtccgc gtcggccggc tcggtacccc tggccgtcgg
     2221 gcgcgcatcg gcttcaaccc cggtcgcagg cccttctcgc gagcggcagc ccgggctcgt
     2281 ttcaacgcgg ccagagcagc atcatccacc aacccgttgt ccaccgcggt cgcgtccgtg
     2341 gatgctcctt cagctgcggg gtcctcgcct cccgaaccct cgccgtggtc gtccttgcgc
     2401 tcagtcacga cgcgtcacct cgccgaggga gacggcatag gtgcggccga tcagcgagga
     2461 gggcacgtcg gcgtcgaccg cggcggtgat gagcacctgc tcgcagtcgg cgatcatcgc
     2521 cgcaaggcgc tcccggcgac cggtgtccag ctccgcgaac acgtcgtcga ggacgagcac
     2581 cggatcgtcg cccaggtcgt ggcgcagcag ctggtatgcg gcgagcttca gtcccagcgc
     2641 gaacgaccag ctctcgccgt ggctggcgta ccccttcgcc gggagctctc cgagcgcgaa
     2701 cacgaggtcg tcgcgatggg ggccagccag ggaaacacct cgctcgacct cacggtctcg
     2761 cacgtcggcc agggtggcga gcagctcgtc gcgcagctcg tcggcctccg gtacgtcgcc
     2821 gccggcgatc cgggtggcgg cgtcttcgcg cagtgagctg cgatacgaga ccctggcgtc
     2881 ggactgaccg gcactgacct cgtcgtaggc cttggacagg tacggcccga ggtcgcgcag
     2941 cagccgcagc cgcgcgtaga gcagctggga ccccaccgtg gagaggtggt cgttccagat
     3001 gtcgagggtg ttcagtgccg aggcgcgcgc gtcgtcgacc ggctcgtcgg ccggtctgga
     3061 tctcggacgt gagccgcggc gcagcaccgg ctgagcggac ttcagcagcg cattgcgctg
     3121 ccgcaggatc ttgtcgtagt ccgcacgcac cccggcccat cgtggctgcc gcgccaccag
     3181 gaggtcgtcg atgaaccgtc gccgctcgga cgggtcgcct ttgaccagtg ccaggtcctc
     3241 cggcgcgaag agcacggtcc gcagggtgcc cagcacctcg cgcggccggg tgacggggga
     3301 gcggcccagc cgagcccggt tcgcccgacc ggggttcagc tcgagctcga cgagcgtctc
     3361 gcgtccgtcg cgcaccacgg caccgcggat cacagcttgc tctgcgccga agcgcaccag
     3421 gggctggtcg gtggcgaccc ggtggctgga cagggtggcc agatagccga tggcctcgac
     3481 gaggttggtc ttgccctgcc cgttcagccc gacgagcgtc gtgatgccgg gctccaaggg
     3541 gagctccgcg gccacgtagc tgcgaaagtc ggcaaccgac aggtgacgga cgtgcacgcg
     3601 ctcccgatca ggactggtct gcggtggtct gcggtggtcg actggtggtc agggcttctc
     3661 gcgcttgggc gaaccggcgt cgcgcagctt gacgccctcg tcgacggtca tgacctggtg
     3721 accaccgaag ccaccgcgca gagccgcgac ggcctgcatg gtgggggact ccttctggcg
     3781 ggaggcgaac cgggagaaca gtgaggccga gatgaccggc atcggcaccg agttcgcgat
     3841 ggcctcctcg acggtccagc gaccctcgcc ggagtcgacc gtgtagccgg agacgtcatc
     3901 caggtgcggg ttcttctcca gcgcatcgac gagcaggtcg agcaaccagg agcggaccac
     3961 cgtgcctcgg gtccaggcct tgaaggcccc cggaacgtcc gtgacgatgt ccttggcctc
     4021 gaggagctcg tagccctcgg catacgcggc catcaggccg tactcgatcc cgttgtggac
     4081 catcttggcg tagtggccgg cacccacctt gccggcgtgc acaaaccctt cgtcgcgcgg
     4141 accctcaggc cgcagcgcgt cgaagatcgg catagctcgc ttcacgttcg ccgct
//
LOCUS       DASYFY010000171         2672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1694719, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000171 DASYFY010000000
VERSION     DASYFY010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1694719"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VGN19_03255"
     CDS             complement(<1..626)
                     /locus_tag="VGN19_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein T"
                     /protein_id="HEV7194935.1"
                     /translation="MSDGSLKTSPLHDRHVALGAKMADFGGWEMPIEYPGGGVVREHS
                     TVRSSVGLFDVSHLGKARVSGPGAREFVNSCLTNDLGRIHEGKAQYTLCCNDSGGVVD
                     DLIAYLRSDEDVFLIPNAANTAAVVELLSASAPEGVVVENLHESYGVIAVQGKRSDEV
                     LDELGLPTGHEYMSFVETDWNGHPVIVCRTGYTGERGYELVPAWEIAA"
     gene            724..2226
                     /locus_tag="VGN19_03260"
     CDS             724..2226
                     /locus_tag="VGN19_03260"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEV7194936.1"
                     /translation="MTTVNVSDRPAHDLKADALVLATVALDGTAALAPGHGLPRPAVS
                     HLEASLKALGAAGTPGEVHTLTAVAEVSSPLVVLTGLGPAPTGSAPFDSEVLRRAAGT
                     ALRSIKNGGKVVVALPASDDVSVAAVAEGAALGAYRYAGVRGPSAKAAKAVTAVTVLT
                     ASARTKPAKASAVRAAVLADAKAYARDLVNMPPNQLFPQSFADSVKARATAANGTVSV
                     KVLDEKALVKGGFGGIVGVGQGSANPPRLVTLTWSPPRAKGSIALVGKGITFDSGGLC
                     IKPPASMLTMKSDMAGAAAVAATVFAAAKLGLPVTVTGYLCLAENMPGGSAQRPSDVV
                     TMRNGTTVEILDTDAEGRMVLGDGLCLAGEAKPDAIVDIATLTGAQMVALGARVAGIM
                     ANDDAFRDRVRAAADASGEAAWPMPLPADLRSQLDSTVADLAHKGERWGGMLTAGLFL
                     KEFVAEGTPWAHVDIAGPSFNEGSAWGYTPKGATGFGVATLLTLIEGYAG"
     gene            complement(2342..2539)
                     /locus_tag="VGN19_03265"
     CDS             complement(2342..2539)
                     /locus_tag="VGN19_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5302 domain-containing protein"
                     /protein_id="HEV7194937.1"
                     /translation="MTGNGKSGHQGPSEDVKRKFREALERKQSHAGRDVSDDNEHGKV
                     DHAQGAATNATQQMFRRKSGG"
BASE COUNT          382 a          971 c          877 g          442 t
ORIGIN      
        1 tctgccgcga tctcccacgc cgggaccagc tcgtacccac gttcgcccgt gtaccccgtg
       61 cggcacacga tcacggggtg cccgttccag tcggtctcca cgaacgacat gtactcgtgc
      121 ccggtgggca gccccagctc gtcgaggacc tcgtcggacc gcttcccctg gacggcgatg
      181 acgccatagc tctcatgcag gttctcgacg acgactccct cgggggcgct cgcgctgagc
      241 agctcgacca cggcggcggt gttggcggcg ttggggatga ggaagacgtc ctcgtcgctg
      301 cgcaggtagg cgatcaggtc gtccaccacg ccgccagagt cgttgcagca caaggtgtac
      361 tgcgccttgc cctcgtgaat gcgtcccagg tcgttggtca ggcagctgtt gacgaactca
      421 cgcgcaccgg gccccgacac ccgcgccttg ccaaggtgag acacgtcgaa caggccgacg
      481 ctggagcgga cggtcgagtg ttccctgacc accccgccac ccgggtactc gatgggcatc
      541 tcccagccac cgaagtcggc catcttggcg ccgagggcga catggcgatc gtgcaggggg
      601 gacgtcttca gggatccgtc gctcatggcg cgaacgctac cgtcctaggg ttaccgtcct
      661 gcgtccgcgg ctattctgcg cttcagcagg tgccacaagc ccccctcccc gaaagatgac
      721 cacgtgacga ccgtcaacgt ctccgaccgt cccgcccatg acctgaaggc cgacgccctg
      781 gtcctcgcca ccgtcgcgct cgacgggacc gccgcccttg cgcctggcca tggcctgccg
      841 cggcccgcgg tctcacacct ggaggcgtcc ctcaaggctc tgggtgcagc gggcactcca
      901 ggcgaggtcc ataccttgac tgccgtcgca gaggtcagca gcccgctcgt cgtgctgacc
      961 ggcctcggcc cggcaccgac cggatcggcg cccttcgact ccgaggttct tcgtcgcgcg
     1021 gccggtacgg cgctgcgctc catcaagaac ggcggcaagg tcgtcgtggc actgcccgcg
     1081 tccgacgacg tctccgtcgc ggcggtcgcc gagggggcag cgcttggtgc ctaccggtat
     1141 gccggggtgc gcgggccgtc cgcgaaggcc gccaaagcgg ttaccgccgt gacggtgctg
     1201 accgcgagtg cgcgcaccaa gccggccaag gcgtccgccg tccgcgctgc cgtcctggct
     1261 gacgccaagg cgtacgcgcg cgacctggtc aacatgccgc cgaaccagct gttcccgcag
     1321 tccttcgcag actccgtcaa ggcccgagca accgcagcca acggcacagt gtccgtgaag
     1381 gtcctcgacg agaaggcgtt ggtcaagggc ggcttcggcg gcatcgtcgg cgtgggacag
     1441 gggtcggcca accctccgcg gctggtgacc ctcacctggt ccccgccgcg ggccaagggc
     1501 tcgatcgccc tggtgggcaa ggggatcacg ttcgactccg gtggtctgtg catcaagccg
     1561 ccggcctcca tgctgaccat gaagtccgac atggccggcg ctgccgcggt ggccgccacg
     1621 gtgttcgccg ctgccaagct cgggcttccg gtcacggtga ccggctacct ctgcctcgcg
     1681 gagaacatgc ccggcggttc ggcccagcgc cccagtgacg tcgtcaccat gcgcaacggc
     1741 acgacagtcg agatcctgga caccgacgcg gagggccgca tggtcctggg cgacgggctg
     1801 tgcctggccg gcgaggccaa gccggacgcc atcgtcgaca tcgccaccct gacgggggcc
     1861 cagatggttg ccctcggcgc gcgcgtcgcg ggcatcatgg ccaacgacga cgccttccgc
     1921 gaccgggtcc gcgccgccgc cgatgcctcg ggtgaggcgg cttggccgat gccgctgccg
     1981 gccgatctgc gcagccagct ggactccacg gtggccgacc tcgcacacaa gggcgagcgc
     2041 tggggaggca tgctcaccgc aggcctgttc ctcaaggagt tcgtggccga gggcacgccg
     2101 tgggcgcatg tcgacatcgc cggaccgtcg ttcaacgagg gatcggcctg gggctacaca
     2161 cccaagggag ccacgggctt cggggtggcc acgctgctca cgctgatcga gggctacgcc
     2221 ggctgacgcg gcataccgtc cgaatccgca cgaacgaacc acaccgacag ccgaggggcc
     2281 cgtccagatc ggacgggccc ctcgcgttgt tcagctcagc gtgtcgcggc gagcggctgg
     2341 ctcagccacc gctcttgcga cggaacatct gctgcgtcgc attcgtcgcc gcaccctgcg
     2401 cgtggtcgac cttgccgtgc tcgttgtcgt cggagacgtc acggcccgcg tgcgactgct
     2461 ttctctccag ggcctcgcgg aacttgcgct tgacgtcctc gctcggccct tgatgacccg
     2521 acttgccgtt cccagtcatg ctttccgttc cctcctgctc gtccgatgtg gtgctgcctc
     2581 gtgcccactt ttgcatctgc tccggcaagg gcaccaccgg ttatgtcgtc agtccttctt
     2641 gcgctgtcgg gagttccact cgcgcatccg tt
//
LOCUS       DASYFY010000172         2521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_800916, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000172 DASYFY010000000
VERSION     DASYFY010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_800916"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VGN19_03270"
     CDS             complement(<1..225)
                     /locus_tag="VGN19_03270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7194938.1"
                     /translation="MAERTFARIVGALRSARLDAGLSQNALACGLPVRGRAVSEWETG
                     AIEPTLGHLMQWSRELNWRLVVIGRDGELRI"
     gene            complement(246..728)
                     /locus_tag="VGN19_03275"
     CDS             complement(246..728)
                     /locus_tag="VGN19_03275"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7194939.1"
                     /translation="MDIWSKEFAGRPECLIDARRFTLAVLGEGDGAHTVALVADELAG
                     NAIKHTASGEPGGEFILRLARFGNRCRVRVDDQGGPTTPSVCAAADEDEAGRGLTIVA
                     MLSACWGVEGDERARSVWAEIPFDEIPAISVADGPPVGLPPQARAKRRVGMTMDDWAR
                     "
     gene            complement(732..1133)
                     /locus_tag="VGN19_03280"
     CDS             complement(732..1133)
                     /locus_tag="VGN19_03280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194940.1"
                     /translation="MRGPEDIRAFLAQHSDGRVIGQVPAMFGIAVTAAEAEFQRRLLS
                     AGHSSSYLALLGLAATLTFDAGEYFATAEEPRRDQSEWHGYHRGLQTALACLIMHETG
                     SNPRQAALEVAEHTETLIRCRWNTRPAAGGG"
     gene            complement(1130..1339)
                     /locus_tag="VGN19_03285"
     CDS             complement(1130..1339)
                     /locus_tag="VGN19_03285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194941.1"
                     /translation="MPRFESKSASDLRVGDWAQFDGRWAEVLACATDPTGWTRLTLDR
                     FPLPETVVHRTVEVLWSRTQPAGLT"
     gene            1572..2303
                     /locus_tag="VGN19_03290"
     CDS             1572..2303
                     /locus_tag="VGN19_03290"
                     /inference="COORDINATES: protein motif:HMM:NF019322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEV7194942.1"
                     /translation="MKRIDDRPQHARIAADLRAKILAGDITGTLPTYTRLQELYDTTT
                     NTAQRAVALLKAEGFVEGKRGKALYIRSDRIRIVDAASQLQPRASTTTYQVLHIGHER
                     PPADAALKLGLADGETALLSKRLMLRDDEPVELEWSYYPDHVVTGTALDQRQSPPQPN
                     RDLATTTTPILAALGRQQHGLVDEIQVREPTTDELQTLEIPDEIPVMRTLRTITDASG
                     TVLEVTVMITSGHLYGVRYQQTLTP"
BASE COUNT          439 a          908 c          803 g          371 t
ORIGIN      
        1 tatgcgcagc tcgccgtcgc gaccgatgac caccagtcgc cagttgagct cgcgcgacca
       61 ctgcatcagg tgccccaagg tcggttctat ggcgccggtc tcccactccg agaccgctct
      121 gccgcggacc gggagtccgc aggccagcgc gttctgggac agtccggcgt ccaagcgggc
      181 ggagcgcagg gcgccgacga tccgcgcgaa ggtcctctcc gccacgtaat caacgtgcag
      241 tgccatcaac gcgcccagtc gtccatcgtc atgccgaccc ttcttttggc tctggcttgc
      301 gggggaagtc cgacgggcgg gccgtcggca accgatatcg ccggtatctc gtcgaagggg
      361 atctcggccc agaccgagcg ggcgcgctcg tcgccctcga cgccccagca ggcggagagc
      421 atggcgacga tggtcaggcc gcgcccggcc tcgtcctcgt cggcggcggc gcagaccgag
      481 ggcgtggtgg gcccgccctg gtcgtcgacc cggacccggc agcggttccc gaaccgcgcc
      541 aggcgcagga tgaactcccc tccgggctcg ccgctggccg tgtgcttgat ggcgttgccg
      601 gccaactcgt cggcgacgag ggccaccgtg tgcgccccat cgccctcgcc gagcaccgcg
      661 agggtgaagc ggcgcgcgtc gatgaggcac tcaggccggc cggcgaactc cttggaccag
      721 atgtccacgg ctcagccacc ccctgcggcg ggccgggtgt tccaccggca tcggatcagc
      781 gtctcggtgt gctcggcgac ctcgagcgcg gcctgccgcg ggttgctgcc ggtctcgtgc
      841 atgatcaggc aggccagggc ggtctgcagg ccgcggtggt agccgtgcca ctcgctctgg
      901 tcgcggcggg gctcctcggc ggtggcgaag tactcgccgg cgtcgaaggt cagggtcgcg
      961 gccagcccca gcagcgcgag atagctgctc gaatggcccg cggacagcag ccggcgctgg
     1021 aactccgcct ccgccgcggt gacggcgatg ccgaacatcg cgggcacctg accgatcacc
     1081 cgcccgtcgc tgtgctgggc cagaaaggcc ctgatgtcct ccgggcccct cacgtcaggc
     1141 ccgccggctg cgtccgcgac cacagcacct ccaccgtgcg gtgcaccacc gtctcgggca
     1201 gcgggaaccg gtcgagggtg aggcgggtcc acccggtcgg gtcggtcgca cacgccagga
     1261 cctcggccca gcggccgtcg aactgggccc aatcaccgac tctgaggtct gatgcggatt
     1321 tcgactcgaa tcgaggcacc ctcggtctcc tttcaacgga acgtgccatg cgatctcgta
     1381 acgcgccgtt agcgtccgac cgcagaggcg cacctcaggt tactgacttc ccagtattgc
     1441 tacaaggata accgggtatt tgccccgtcc ctcccacgaa cgccgcatac cggcgtagtg
     1501 ctgctactgt gtcgctgagg tgcgcacgga agggaactga tggaagtagg ggaagtaggg
     1561 gcctgcgaca tatgaagcgc atcgacgacc gtccgcagca cgctcgcatc gccgcggacc
     1621 tgcgagcgaa gatcctcgcc ggcgacatca cggggacgct tccgacgtac acccgcctcc
     1681 aggagctgta cgacaccacc acgaacaccg cccagcgagc ggtggccctg ctcaaggcgg
     1741 agggcttcgt cgagggcaag cgcggcaagg ccctgtacat ccgctccgac cgcatcagga
     1801 tcgtcgacgc cgcgtcccag ctccagccgc gggccagcac caccacgtat caggtcctgc
     1861 acatcggcca cgaacgcccg ccggcggacg ccgccctcaa gctcggcctg gccgacggcg
     1921 agacggccct gctcagcaag cgcctgatgc tccgcgacga cgaacccgtc gagctcgagt
     1981 ggtcgtacta ccccgaccac gtcgtcaccg gcaccgccct cgaccagagg caatcaccgc
     2041 cccagccgaa ccgcgacctg gcgaccacaa cgacgccgat cctggcagcc ctgggccggc
     2101 agcagcacgg actcgtggac gagatccagg tccgcgaacc gaccaccgac gaactgcaga
     2161 ccctcgaaat ccccgacgag atcccggtca tgcgcacgct ccgcaccatc accgacgcga
     2221 gcggaacagt gctggaggtg accgtgatga tcaccagcgg ccacctgtac ggcgtgcgct
     2281 accagcagac cctcacgccg tagggcttag atttcagcgg tataggtttc gtcggcacag
     2341 aactttcgtc ggcacagaat ttcttcgtcg gcacagaatt tcgccgaccc agaatctcgc
     2401 cggcacagat tactgatgtg catacgggct cgaacctcaa aatactgcgt tagcagtaac
     2461 gtcatgatcc ataacagaat acgagcccac cccgcaccca tggcggaaat agccgagtat
     2521 t
//
LOCUS       DASYFY010000173         7187 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_118232, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000173 DASYFY010000000
VERSION     DASYFY010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7187
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118232"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..1090
                     /locus_tag="VGN19_03295"
     CDS             143..1090
                     /locus_tag="VGN19_03295"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEV7194943.1"
                     /translation="MQTRRIHALGAAVIAATLTLTACGGSSSPKAAALDQVTVTGGSD
                     TSAPTVTVKPKPLSVTQTTTRVLKAGTGATVKGDEIVSLKYVLLNAKDGSQLDTNFGK
                     QNLGLNLGAADLLPGLKKGLANQKIGSRILVAMPPKDAFGTQGNAQIKVGPTDTVLFL
                     MDLVSSQTPLKTAQGTAVTPPATLPTVTIHDGKAATIAIPKGAKAPTKTVGQLLIKGS
                     GATVAAGQTIRVTYTGALWKNGTNFDASANSPTGYFETVIGQKHVIKAWDDQLVGKTV
                     GSRVLLIVPPADGYGAAGSPPKISGTDTLVFVVDILAAY"
     gene            1136..1522
                     /locus_tag="VGN19_03300"
     CDS             1136..1522
                     /locus_tag="VGN19_03300"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEV7194944.1"
                     /translation="MGFDPNTTKPEIDFPGDNAPSELVIEDLKEGDGPQAAAGNTISA
                     HYVGVAHSTGEEFDASWNRGAPLDFRLGVGQVIRGWDDGIVGMKVGGRRRLTIPSHLA
                     YGDRGAGAAIKPGETLIFVVDLVDVR"
     gene            complement(1531..2655)
                     /locus_tag="VGN19_03305"
     CDS             complement(1531..2655)
                     /locus_tag="VGN19_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3866 family protein"
                     /protein_id="HEV7194945.1"
                     /translation="MMQWRDGTVQEVRGRWPGAVEYAVVLAGADSASEAVTVRALAYT
                     ALVGEPQVGDRVLLNASALLRGLGTGGLAFVVAAPDRLPSDPPGPHGHIVKARYTPQQ
                     QMFLAVDEQDSPHHPVMTSPLASAGDLQGMPVVVADLHSALPAVLAGLRADRPHARAV
                     YVMTDGGALPIAFSRTVGGLRDAGWLVGTVTVGQAYGGDHEAVTLHSGLLAARHVLEA
                     DVAVIVQGPGNVGTGTTWGFTGVAAGEALNAVSTLGGQGVAALRVSEADPRERHHGLS
                     HHSATAYGRICLVAAEVPVPELDTPFGHAVAEQVHALVRAAPGSLKVRAVGAEGLDLA
                     LRACPVPLSTMGRSLDDDYPAFLYNAAAGRHAARLLSEVG"
     gene            2707..3705
                     /locus_tag="VGN19_03310"
     CDS             2707..3705
                     /locus_tag="VGN19_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006947232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEV7194946.1"
                     /translation="MSSPTGPAAKTERLLNLVLCLLYTRRPLPKSKIREVVPQYGSAA
                     SDEAFDRMFERDKDELRELGIPLVTEDIGGVWDDELGYRIDQRDYALPDIEFEADELA
                     VLGLASRTWAHASLAGPAAQALRKLKAIDIERDGESLVGIEPRLGTREAAFEPVKNAV
                     VGQQTIAFGYRTGGQGETRNRRVQPWGLASWHGRWYLTGFDLDRAAPRVFRLSRIVDD
                     VRPIGKPGGYAVPADHRAREMIRTTVGDQTVREARILVRQGRGQALRRRGEEANEPSL
                     LINGGWTTLVVPFSDADAFADEVSGYGPDVVVEEPPEVRDLVVARLRGAASAEVLA"
     gene            3702..4673
                     /locus_tag="VGN19_03315"
     CDS             3702..4673
                     /locus_tag="VGN19_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEV7194947.1"
                     /translation="MSAPETATARLSRLLTMVPWLVNRQGIDMDQAAAELGISATQLE
                     TDLRLLYLCGYGQMPDELIDAQWDSGRVFVTNADAIARPLRLGRDEALTLMVGLRALA
                     AVPGLGERDAIERAMAKLEQATGASAEAASRVEVSIDDGVGAGLLAGARRAIEDHHRV
                     HLRYLVPSRDESTERDVDPMRVVNLESRWYLEGWCHRAQDTRLFRMDRIESLEVLDDD
                     GTPPREAQLRDLDAGIFTPRPDDTLVTLRLAPGAAWVSDYYPVESVETAADGSQTVTL
                     RTADTLWLRRLMWRLGGLGTVLAPVELAEAVRDGAAAALAAYDGLGF"
     gene            4676..4981
                     /locus_tag="VGN19_03320"
     CDS             4676..4981
                     /locus_tag="VGN19_03320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194948.1"
                     /translation="MWWWLLIWALLAVIAAAYLASRLWAVWGQFKELTAEVGHASHTV
                     AGLQAHADRLGERGPEDELAVFGDPRQLRKERVKTRGALKDERHARRAAKFPSWARH"
     gene            5069..5386
                     /gene="tatA"
                     /locus_tag="VGN19_03325"
     CDS             5069..5386
                     /gene="tatA"
                     /locus_tag="VGN19_03325"
                     /inference="COORDINATES: protein motif:HMM:NF001854.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEV7194949.1"
                     /translation="MLRGLEGWHVIILLVLLVVLFGFRRLPDAARSLGRSMRIFKSEV
                     NEMKNDGRSAASSDTVKGEALKDPTTEQTTAEQTTREQAPHGAPSTHDDPGPREGNAS
                     GVS"
     gene            5411..6217
                     /gene="tatC"
                     /locus_tag="VGN19_03330"
     CDS             5411..6217
                     /gene="tatC"
                     /locus_tag="VGN19_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEV7194950.1"
                     /translation="MAFRRARNPEGRMSLGDHLRELRRRVLICAAAVFLAAIAGWILY
                     PGVYSALAAPFNDYKRAHPTSVISLNFGNATAAFSQQLSIAIFFGVLVASPVWMFQLW
                     AFIVPGLTRKERRISLAFIGAIVPLFLSGCALAYYVLPKVLAVLYGFTPPGASNIQQV
                     SDYFSFVTRFILAFGGSFLLPVLLVALNAIGILPSRVMLRSWRPAVFGIFVLSAVATP
                     TPDAFTMFLLAIPLVALFFGAIGVSKLIERGRKRSRPDWTDLSDDEASSL"
     gene            6227..7126
                     /locus_tag="VGN19_03335"
     CDS             6227..7126
                     /locus_tag="VGN19_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0001727 - lipid kinase activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YegS/Rv2252/BmrU family lipid kinase"
                     /protein_id="HEV7194951.1"
                     /translation="MAKRVGLVVNPTSGKNRGMTLGLEVAHRLRAAGHEVLDLSDETY
                     AAARDRALGAIAQGLDVLAVVGGDGMVHLGVNLVAQTPVTLAVIGAGTGNDVARGLGL
                     PVHDPVRAADVVTSGVPRIIDAVRHLDAHGASHWYAGVLGAGFDSVVNERANTWPWPK
                     GQMRYNLAILRELPLFRPIPYVVTVDGVRHETRAMLVVVANGPSYGGGMRVAPNAEFD
                     DGLADVVILHEIGTLEFLKVFPTVFKGTHINHPAVEVLRGRNITLEAKGIVAYADGER
                     FAPLPLTLEIVPGAITVLAPRVG"
BASE COUNT         1131 a         2541 c         2435 g         1080 t
ORIGIN      
        1 aaggacccct tcgcggccgt ggacgctcgg gtcgaacgcc tcatcgaggg catgcgcagc
       61 tgacggccga cccgggggtc aaggcctgcc aggtatgccg gttatggtgg acgctgctcc
      121 cacccccggc gaaagttctc ccgtgcaaac acgacgtatc catgccctcg gcgctgccgt
      181 catcgcggcg acgctgacgc tgaccgcctg cggtggctcc tcgagcccca aggcggccgc
      241 gctggaccag gtgaccgtaa ccgggggcag cgacacctct gccccgacgg tcaccgtcaa
      301 gccaaagccc ctgtcggtga cccagacgac cacgcgcgtc ctgaaggccg gcaccggcgc
      361 cacggtcaag ggcgacgaga tcgtcagcct gaagtacgtc ctgctcaacg ccaaggacgg
      421 ctcgcagctc gacacgaact tcggcaagca gaacctgggc ctcaacctcg gggctgcaga
      481 cctgcttccg ggcctcaaga agggtctggc caaccagaag atcgggtccc ggatcctggt
      541 ggccatgccg cccaaggacg ctttcggcac ccaggggaac gctcagatca aggtcggccc
      601 gaccgacacc gtcctcttcc tgatggacct ggtgtcgagc cagacgccgc tgaagacggc
      661 gcagggcacg gccgtgacgc cgcccgccac cctgcccacg gtgaccatcc acgatggcaa
      721 ggccgcgacc atcgcgatcc ccaagggcgc caaggcaccc accaagacgg tcggccagct
      781 gctcatcaag ggctccggtg ccaccgtcgc cgcgggacag acgatccggg tgacctacac
      841 cggcgcgctg tggaagaacg gcacgaactt cgacgcctcg gcgaacagcc cgacggggta
      901 cttcgagacc gtcatcggcc agaagcacgt catcaaggcc tgggacgacc agctcgtcgg
      961 caagaccgtc ggcagccggg tcctgctcat cgtccccccg gccgacggct acggcgccgc
     1021 cggcagcccg cccaagatca gcggcacgga caccttggtg ttcgtcgtcg acatcctcgc
     1081 ggcctactga ccgacgacta cctgatccgc acgactccca cctaaggaga cccacatggg
     1141 attcgacccg aacaccacca agcccgagat cgacttcccc ggtgacaacg ccccgagcga
     1201 gctcgtcatc gaggatctca aggagggcga cggcccccag gccgcagccg ggaacacgat
     1261 ctccgcgcac tacgtcggcg tggcgcactc gaccggcgag gagttcgacg cctcgtggaa
     1321 ccgcggtgca cccctcgact tccgcctcgg cgtgggtcag gtcatccgcg gctgggacga
     1381 cggcatcgtc gggatgaagg tcggcggccg ccgccggctc accattccgt cacacctggc
     1441 ctacggcgac cgcggagcgg gcgccgccat caagcccggc gagaccctga tcttcgtggt
     1501 cgacctcgtg gacgtgcgct gagcctccgc tcaacccacc tctgacagca gccgggcggc
     1561 atgccgcccg gctgctgcgt tgtagaggaa ggccgggtag tcgtcgtcga ggcttcgacc
     1621 catcgtcgac aacggcaccg gacacgcacg cagggcgagg tccaacccct cggctcccac
     1681 ggcgcggacc ttcagggacc cgggggcggc ccggacgagg gcgtgcacct gctcggccac
     1741 cgcatgaccg aacggggtgt cgagctcggg gaccgggact tccgccgcaa ccaggcagat
     1801 gcgcccgtaa gcggtcgcgc tgtgatgcga cagcccgtga tgacgctcgc gagggtccgc
     1861 ctctgagacg cgcagggccg ccacgccctg accacccagc gtggaaaccg cgttgagcgc
     1921 ctcgccggcg gccacgccgg tgaatcccca cgtcgtgccc gtcccgacat tgcccggacc
     1981 ctgcacgatg acggcgacgt cggcctcgag gacgtgccga gccgccaaga gtccagagtg
     2041 caacgtcacc gcctcgtggt ctccgccgta ggcctggccc accgtgacgg tgcccaccag
     2101 ccagccggca tcgcgcagac ccccgacggt ccgcgagaag gcgatcggca acgcaccccc
     2161 atcagtcatg acgtacaccg cgcgggcgtg cgggcggtcg gccctcaggc cggccaacac
     2221 tgccggcagc gccgagtgca gatcggccac gaccaccggc ataccctgca ggtctcccgc
     2281 cgaagcgagg ggcgacgtca tcacggggtg atgcggactg tcctgctcgt cgactgccag
     2341 gaacatctgc tgctgagggg tgtagcgggc tttgacgatg tggccgtgtg gcccgggagg
     2401 gtcgctgggc agccggtcgg gggcggcgac gacgaaggcc agcccaccag tgcccagccc
     2461 acgcaacagc gcggaagcat tgagcagcac ccggtcgccg acctggggct cgccgacgag
     2521 cgccgtgtag gccagggccc ggactgtgac cgcctcactc gcggagtccg ccccggccag
     2581 caccacggca tactccaccg cgccgggcca tcggccccgc acctcctgga ccgtcccgtc
     2641 gcgccactgc atcacgacac gcagactagc cgcgaggggg tcctgccact caggtagcgt
     2701 cgggctgtga gttctccgac cggccccgca gccaagaccg agcgtctgct caacctcgtg
     2761 ctgtgcctgc tctacacgcg gcggcccctg cccaagtcga agatccgcga ggtcgtgccg
     2821 cagtacggtt cggccgccag cgacgaagcc ttcgaccgga tgttcgagcg cgacaaggac
     2881 gagctgcgcg agctggggat cccgctggtc accgaggaca tcgggggcgt ctgggacgac
     2941 gagctgggct atcgcatcga ccagcgcgac tatgccctgc cggacatcga gttcgaggcg
     3001 gacgagctcg cggtgctcgg cctggccagc cggacctggg cgcacgcctc cctcgcaggt
     3061 ccggccgctc aggcgctgcg caagctcaag gcgatcgaca tcgagcgcga cggcgagtcc
     3121 ttggtcggta tcgagccgcg gctcggtacc cgcgaggcgg ccttcgagcc ggtcaagaac
     3181 gccgtggtgg ggcagcagac catcgcgttc ggctaccgca ccggcggcca gggcgagacc
     3241 cgcaaccgcc gcgtccaacc gtggggcctg gcctcctggc atggtcgctg gtacctgacg
     3301 gggttcgacc tcgaccgggc cgcacctcgg gtcttccgcc tctcgcggat cgtggacgac
     3361 gtgcgtccga tcggaaagcc cggcgggtat gccgtgccgg ccgaccaccg ggcgcgagag
     3421 atgatccgga ccacagtggg ggaccagacc gtcagagaag cacgcatcct cgtccgccag
     3481 ggccgcggac aggccttgcg gcgccggggt gaggaggcga acgagccgag cctgctgatc
     3541 aacggcggct ggacgaccct ggtggtcccc ttcagcgatg ctgacgcgtt cgccgatgag
     3601 gtgagcgggt acgggcccga cgtcgtggtc gaggagcccc ccgaggtgcg cgacctggtc
     3661 gtggcccgtc tgcggggcgc cgcgagcgcg gaggtgctcg catgagcgca ccggaaacag
     3721 ccaccgcccg cctgtcccgg ctgctgacca tggtgccgtg gctggtcaac cgccagggca
     3781 tcgacatgga ccaggccgcg gccgagctcg gcatcagcgc cacccagctc gagaccgacc
     3841 tgcggctgct ttacctgtgc ggctatggac agatgccgga cgagctgatc gacgcgcagt
     3901 gggacagcgg gcgcgtcttc gtcaccaacg ccgacgcgat cgctcgaccg ctccgtctcg
     3961 ggcgtgacga ggccctgacc ctcatggtgg ggctgcgcgc cctggcggct gttcccggcc
     4021 tcggggagcg cgatgcgatc gagcgggcca tggccaagct cgagcaggcg accggcgcca
     4081 gcgccgaggc cgcgtcgcgc gtcgaggtgt ccatcgatga cggcgtcgga gcagggttgc
     4141 tggcgggtgc tcgacgggcc atcgaagacc accaccgggt ccatcttcgg tacctcgtgc
     4201 cgagccggga cgagtcgacg gagcgcgacg tcgaccccat gcgggtcgtc aacctcgagt
     4261 cacgttggta cctggagggc tggtgccatc gcgcccagga cacccgcctc ttccggatgg
     4321 accgcatcga gagcctggag gtgctcgacg acgacgggac accccctcgg gaggcgcagc
     4381 tgcgcgacct cgatgccggc atcttcacgc cacgtcctga cgacaccctc gtgactcttc
     4441 ggctggcgcc gggcgccgcc tgggtcagcg actactaccc ggtcgagagc gtcgagacgg
     4501 ctgcggacgg cagtcagacc gtcaccctgc gcaccgcgga cacgctgtgg ctgcgccgac
     4561 tgatgtggcg gctcggtggc ctcggcacgg tgttggcacc cgtcgagctc gccgaggcgg
     4621 tccgcgacgg ggccgcggcc gctctcgcgg catacgacgg gctagggttc tagccgtgtg
     4681 gtggtggctt ctgatctggg cgctgctcgc ggtcatcgcg gcggcctatc tggcgtcccg
     4741 tctctgggct gtctgggggc agttcaagga gctcaccgcc gaggtggggc acgcgtccca
     4801 cactgtcgcc ggactgcagg cgcacgccga ccggctcggg gagcgaggtc cggaggacga
     4861 gcttgcggtg ttcggagacc cccgtcagct gcgcaaggaa cgggtgaaga cccgcggtgc
     4921 gttgaaggac gagcggcacg cgcgacgggc cgccaagttc cccagctggg ctcgtcacta
     4981 ggcgactgcc gcacatccag tgtcgcggcg gccagtgcca gggcgtcacg tatgctggtt
     5041 tcaatcacgt caaccggaaa ggcagaccat gctcaggggc ttagagggct ggcacgtcat
     5101 catcctgctg gtcctgctcg tcgtcctgtt cgggttccgc cggcttcctg acgccgcgcg
     5161 cagtctcggt cgctccatgc ggatcttcaa gtccgaggtc aacgagatga agaacgacgg
     5221 tcgcagcgca gccagcagcg acaccgtcaa gggtgaggct ctcaaggacc ccaccacaga
     5281 gcagaccacc gcagagcaga ccaccaggga gcaggctccg cacggtgcgc cgtcgacgca
     5341 tgacgacccc ggtcctcgcg agggcaacgc ctccggcgtc tcctgaccac tgccaccgca
     5401 acagtccacg atggcgttcc gccgtgcccg caaccccgaa gggcgcatgt cgctgggcga
     5461 ccatctgcgg gagctccggc ggcgtgtgct catctgcgcg gctgcggtct tcctcgcggc
     5521 catcgctggc tggattctct accccggggt gtactcggcg ctggcggcac cgttcaacga
     5581 ctacaagcga gcgcacccca ccagcgttat cagcctgaac ttcggcaacg ccacggcggc
     5641 tttctcccag cagctcagca tcgccatctt cttcggggtg ctcgtcgcca gccccgtgtg
     5701 gatgttccag ctctgggcgt tcatcgtgcc cgggctgacc cgcaaggaac gacgtatctc
     5761 gctggccttc atcggcgcga tcgtgccgct gttcctctcc gggtgcgcac tggcctacta
     5821 cgtgctcccc aaagtgctgg ctgtgctgta cgggttcacc ccgccgggtg cctcgaacat
     5881 ccagcaggtc agcgactact tctcgttcgt cacccgcttc atcctggcct tcggtggttc
     5941 gtttctcctg cccgtcttgt tggtggccct caacgccatc ggcatactgc cgtcgagggt
     6001 gatgcttcgt tcgtggcgcc ccgcggtctt cgggatcttt gtcctgtcag ctgtggcgac
     6061 gcccacgccg gacgccttca cgatgtttct cctcgcgatt ccgctggtcg ccttgttctt
     6121 cggggccatc ggggtgagca agctcatcga gaggggccgg aagcgcagcc gtccggactg
     6181 gacggacctg tctgatgacg aggcgtccag cctgtaatct ccgcccgtgg ctaaacgcgt
     6241 cgggttggtg gtgaatccca cctcgggcaa gaaccgtggc atgacgttgg gcctggaggt
     6301 ggcgcaccgg ctgcgcgcgg cgggtcacga ggtcctcgac ctgtcggacg agacgtatgc
     6361 cgccgcacgt gaccgggcgc tgggagccat cgcccaggga ttggacgtcc tcgcggtcgt
     6421 cggtggtgac ggcatggttc atctgggcgt caacctggta gcgcagactc cggtgacgtt
     6481 ggccgtgatc ggggcaggga ccggcaacga cgtggccagg ggactgggcc tacccgtcca
     6541 tgatccggtc cgcgccgcgg acgtggtcac ctcaggagtg ccgcgcatca tcgatgccgt
     6601 gcgccacctc gacgcccatg gggcatcgca ctggtatgcc ggggtgctcg gggcggggtt
     6661 cgactcggtc gtcaacgagc gggccaacac ctggccgtgg cccaagggcc agatgcgcta
     6721 caacctggcc atcctgcgcg agctgccgct gttccggccg atcccgtacg tggtgacggt
     6781 ggacggagtc cggcacgaga ctcgggcgat gctggtcgtc gtggcgaacg ggccgtcgta
     6841 tggcggtggc atgcgagtcg cccccaacgc cgagttcgac gacggcctcg cggacgtcgt
     6901 catcctgcac gagatcggga cccttgagtt cctcaaggtc ttcccgaccg tgttcaaggg
     6961 cacccacatc aaccaccccg cggtcgaggt cctgcgtggg cgaaacatca ccctggaggc
     7021 caagggcatc gtcgcatatg ccgacggcga gcgcttcgcg ccgcttccgt tgacgctgga
     7081 gatcgttccc ggcgcgatca cggtgctggc tccccgcgtc ggataggcac gccccgtagg
     7141 ctcggtccat gtccacgccc gccgagcggt atgccgggag cgcccgc
//
LOCUS       DASYFY010000174         5448 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1694760, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000174 DASYFY010000000
VERSION     DASYFY010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5448
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1694760"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..1456)
                     /gene="murC"
                     /locus_tag="VGN19_03340"
     CDS             complement(8..1456)
                     /gene="murC"
                     /locus_tag="VGN19_03340"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEV7194952.1"
                     /translation="MNGENSRFDFTAPIPALDELGAVHFIAIGGAGMSGVARVMLARG
                     CRVSGSDAKQSPVLAALSAEGADVHVGHDPAYLDGKDTVVISSAIRESNVELAAARER
                     GLRVLHRAQALASTMVDARRVAVAGANGKTTTTSMLTVALQHCGTDPSFAAGGELAKH
                     GTNAHWGNGDIFVAEADESDGSFLVYRPHVAVVTNVQADHLDFYGTFSRVQEAYAAFV
                     GSVEPDGLLVACQDDEGSRQLADVARAAGTRVLTYGWSPESDVVLAGVAFRGLTSHTS
                     ITGPDGVARILRINIPGRHNLLNAAAAFTTAVEGLGQDPERVLEGLFGFTGTRRRFEP
                     KGSEGGVSVVDDYAHNPGKVAAVVGTGAELVRAGESPGRLVVVFQPHLYSRTRDFARE
                     FAAALAPADVVVLMEIYGAREDPMPGISSQLVADALGELRSDADVEVISSWSAVADAV
                     AARTRPGDLVLTVGAGDVTMIGPEILRALGQA"
     gene            complement(1453..2595)
                     /gene="murG"
                     /locus_tag="VGN19_03345"
     CDS             complement(1453..2595)
                     /gene="murG"
                     /locus_tag="VGN19_03345"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEV7194953.1"
                     /translation="MSDPRPTSVLLAGGGTAGHVSPLLALADCLRRRDPEIAIAALGT
                     QAGLESRLVPERGYELITVPKVPLPRKPSSDLLRLPGSLRAAVAAAERAIDATGAQVV
                     VGFGGYVSTPAYLAARRRHVPVVVHEQNARPGVANRVGARLTHHVATTFTSTRLPHAT
                     TIGMPLRREIAQLDRAASRASALEHFGLRDHRPTLLVTGGSLGAQRLNATFASRVAAL
                     RAAGVQVLHLTGAGKAFDVEVAGSGEDPVPYVVAPYTDRMDLAYAVADLVVARAGANT
                     VCELTAVGLPAVYVPLPIGNGEQRFNAADVVAAGGGLLVEDGALTPEWVDEVLVPLLS
                     DSARLEAMAAAAARVGERGADEILADMVTTAFRDFTDPGHLRTTGR"
     gene            complement(2592..3872)
                     /gene="ftsW"
                     /locus_tag="VGN19_03350"
     CDS             complement(2592..3872)
                     /gene="ftsW"
                     /locus_tag="VGN19_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEV7194954.1"
                     /translation="MSSATTAPPRARNSAREDDARSRRPVTGWLSRLESPVTSYYVLL
                     SVTVVLVVMGLIMVMSASSVLSLVQTNNATPYAYFRKQVQFALVGGVLMAIAAHVPVR
                     RWKAMSMVILAGAVFMELLVFTPLGMRVNGNRNWLALGPVSMQPSEFIKLGLVLVGAT
                     VLSAKRRKLGQLRHIVVPFLFPIVAVAVGLVLLGGDLGTTMIIFAIVAALLFSSGVPM
                     KWFAWGGAGFASVALLAVATSHNRLRRFDVWLGKDTNPYGAARQPIHGRYALADGGWW
                     GVGLGASREKWSWLPEAHNDFIFAIVGEELGLPGTLVLLGLFCALTLVCYRIVSRTSD
                     QFVRIATAGVMSWIIFQAFVNIGAVVGLLPVIGVPLPLVSYGGSSLTTTMLALGMLLS
                     FARAEPGCAEVLSAKPSVVRRSLTVLSSRRRSRS"
     gene            complement(3875..5386)
                     /gene="murD"
                     /locus_tag="VGN19_03355"
     CDS             complement(3875..5386)
                     /gene="murD"
                     /locus_tag="VGN19_03355"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEV7194955.1"
                     /translation="MSGAIGAGAVGGRLDGLTNGAADWNGLRVIVAGLGVSGFAAADA
                     LHERGARVVAVDGGDPVQNSQLGERARILDILGVDVRLGPEHVAELPAGPPPDLVVTS
                     PGWRPDQALLAAAEQAGIPVWGEVELAWRMRPAVGPAPWLTITGTNGKTTTVTMLASM
                     LRAAGLRATAAGNVGTPILEAVLHPQPYDVIAVELSSFQLHWSDSLQPYASACLNVAP
                     DHLDWHGSLEEYTRAKGKVYANTKVACVYNVEDPATERLVMEAEVQEGCRAIGFTLGT
                     PGLSMVGVVEDIVADRAFVEQRKTSAAELATLADVQGSLPVLAPHHLANALAAAALAR
                     AYGVPPLAVRDGLRAYTPQPHRIADLGELDGVRYVDDSKATNPHAAAASRAAFDHVVW
                     VAGGLLKGADVEGLVRDAAGRLRGVVLIGADRARIAEALSRHAPDVPVVDVTSTDTGV
                     MDLVVAHAAALAEPGDVVLLAPAAASMDMFPNYGARGAEFAAAVARRAGSAGA"
BASE COUNT          913 a         1938 c         1890 g          707 t
ORIGIN      
        1 tttcgcgtca tgcctgaccc agggcgcgca ggatctccgg gccgatcatg gtcacgtccc
       61 cggccccgac ggtgagcacg aggtctcccg gccgggtgcg ggccgcaacg gcatcggcga
      121 ccgcggacca ggaggagatg acctcgacgt cagcgtcaga gcggagctcg cccagcgcgt
      181 ccgccaccag ctgcgaggag atgccgggca tggggtcctc gcgcgcgcca tagatctcca
      241 tcagcaccac cacgtcggca ggtgccagcg ccgcggcgaa ctcacgagcg aagtcgcggg
      301 tgcgagagta cagatgtggc tggaagacca ccaccaaccg tcctggcgac tcccccgcgc
      361 ggacgagctc tgctccggtc ccgaccaccg ccgcgacctt gccggggttg tgcgcgtagt
      421 cgtcgaccac ggagaccccg ccctcggaac ccttgggctc gaaacgtcga cgagtgccgg
      481 tgaacccgaa caggccctcg aggacgcgtt ccgggtcctg gccaaggcct tcgaccgcag
      541 tcgtaaacgc cgccgcggca ttgagcaggt tgtgccgccc ggggatgttg atccgcagga
      601 tccgtgccac cccgtcaggc ccggtgatgc tggtgtggct cgtcagcccg cgaaacgcca
      661 cgccggccag gacgacgtcg gactcgggcg accagccata cgtcaggacg cgggtaccgg
      721 ccgctctggc gacatccgcg agctggcgcg aaccctcgtc gtcctggcag gccacgagca
      781 gaccgtcggg ctcgacggag cccacgaacg cggcatacgc ctcctggacg cggctgaacg
      841 tgccatagaa gtcgagatgg tccgcctgca cgttggtcac gacggcgacg tgcggccggt
      901 agaccaggaa cgaaccgtcg ctctcgtccg cttccgcgac gaagatgtcg ccgttgcccc
      961 agtgcgcgtt cgtgccgtgc ttggccagct caccccccgc ggcgaacgag ggatcggtgc
     1021 cacagtgctg aagtgcgacc gtgagcatgg acgtcgtcgt cgtcttgccg ttcgcacccg
     1081 ccacggccac ccgacgcgcg tcgaccatgg tgctggccaa cgcctgagcc cggtgcagga
     1141 cacggagccc gcgttcgcgg gcggcggcga gctcgacgtt ggactcccgg atcgccgagg
     1201 agatgaccac ggtgtccttg ccatcgaggt atgccgggtc gtggccgaca tgaacgtcgg
     1261 ccccctcggc cgagagagca gccaggaccg gcgactgttt cgcatccgag ccgctgaccc
     1321 gacagccccg ggcgagcatg acgcgggcga cgccggacat accggccccg ccgatcgcga
     1381 tgaagtggac ggcaccgagc tcgtccagag ccgggatggg cgcggtgaag tcgaaccgcg
     1441 agttctcgcc gttcatcgac cggtcgtcct gaggtgcccc gggtcggtga agtcccggaa
     1501 ggcggtcgtc accatgtcgg ccaagatctc gtcggcgcca cgctcgccca cccgcgcggc
     1561 ggcagcggcc atcgcctcga gacgcgccga gtcggacagc aacggcacca acacctcgtc
     1621 gacccactcg ggcgtcaggg cgccgtcctc caccaggagg ccacccccgg ccgccaccac
     1681 gtcagcggcg ttgaagcgct gctcgccgtt gccgatcggc agcggcacgt acaccgcggg
     1741 aagtcccaca gccgtcagct cacaaaccgt gttggcgccc gcccgtgcga ccaccaggtc
     1801 ggccacggca tacgccaggt ccatccggtc ggtgtacggc gccacgacat agggcactgg
     1861 gtcctcgccg gacccggcga cctcgacgtc gaacgccttc ccagcgccgg tcaggtgcag
     1921 gacctggacc ccagcagcgc gtagcgcagc gactcgggag gcgaacgtgg cattgagccg
     1981 ctgggcgccc agcgaaccgc cggtcaccag cagggtgggg cgatggtccc gcaagccgaa
     2041 gtgttccagg gcgctcgccc gggaggccgc gcggtccagc tgcgcgatct cgcggcgcag
     2101 cggcataccg atcgtcgtgg cgtgcggaag ccgggtgctg gtgaaagtgg tggcgacatg
     2161 gtgggtcagc cgggccccga cccggttggc gacaccgggc cgggcgttct gctcgtggac
     2221 gaccaccggc acgtgccggc gccgcgccgc caggtaggcc ggcgtcgaga catagccgcc
     2281 aaagcccacc acgacctggg ctccggtggc atcgatagcc cgttcggccg ccgccaccgc
     2341 ggcccgcaag ctcccgggca ggcgcagcag gtctgacgac ggcttcctgg gcagcggcac
     2401 cttgggcacc gtgatcagct catagccgcg ttcgggcacc aggcggctct ccaaaccggc
     2461 ttgggtgccg agcgccgcga tcgcgatttc ggggtcccga cggcgcaggc agtcggccag
     2521 ggcaagtagc ggcgagacgt ggccggcagt accgccgccg gcgagcagca ccgacgtggg
     2581 gcgcgggtcg ctcatgatcg cgaccgccga cgagacgaca acaccgtcaa ggagcgccgg
     2641 accaccgagg gcttggccga gagcacctcc gcacaacctg gctcggctcg cgcgaacgac
     2701 aacaacatgc ccaacgccaa catcgtcgtc gtcagggatg acccgccata ggagaccagc
     2761 ggaagcggca ccccgatgac gggcagcagg ccgacgaccg cgccgatgtt gacgaacgcc
     2821 tggaagatga tccaggacat caccccagcg gtggcgatgc gcacgaactg gtcgctggtc
     2881 cgcgagacga tgcgataaca gaccaaggtc aaggcgcaga acagcccgag caggacgagg
     2941 gtgccgggca gccccagctc ctcccccacg atcgcgaaga tgaagtcgtt gtgcgcctcg
     3001 ggcagccacg accacttctc acgactggcc cccagcccca caccccacca gccgccgtcg
     3061 gcaagggcgt agcgcccgtg gatcggctga cgcgccgcgc cgtaagggtt ggtgtccttg
     3121 cccagccaca cgtcgaaccg ccgcagccgg ttgtggctcg tggccacggc cagcagggcg
     3181 acgctcgcga aacccgcacc accccaggcg aaccacttca tcggcacgcc ggaggagaac
     3241 aacagcgccg ccacgatggc gaagatgatc atcgtggtgc caaggtctcc gccgagcagg
     3301 accagaccca cggccacggc gacgatgggg aacaggaacg gcacgacgat gtggcgcagc
     3361 tggccgagct ttcggcgttt ggccgagagc accgtggcac cgaccagcac gagtccgagc
     3421 ttgatgaact ccgagggctg catgctgacc ggtcccagcg cgagccagtt gcggttgccg
     3481 ttgacccgca tgcccagtgg cgtgaagacc agcagctcca tgaagaccgc accggcgagg
     3541 atgaccatcg acatggcttt ccatcgacgc accgggacat gggccgcgat ggccatgagg
     3601 acgccgccca cgagggcgaa ctgaacctgc ttgcggaagt aggcgtaggg ggtcgcgttg
     3661 ttggtctgca ccagcgacag caccgacgag gccgacatca ccatgatcag ccccatgacg
     3721 accagcacca cggtgacgga caacaacacg tagtagctcg tgacgggtga ctccagtcgg
     3781 ctcagccagc ccgtgacggg tcggcggctc ctggcgtcat cctcgcgcgc ggagttccgc
     3841 gctctgggtg gcgcggtcgt ggcactgctc acggttaagc cccggctgac ccggcgcggc
     3901 gcgcgactgc cgcggcgaac tcggcgcctc gggcaccgta gttggggaac atgtccatgg
     3961 aggcggccgc gggcgccagg agcacgacgt cgccgggctc cgcgagtgct gccgcgtggg
     4021 cgacgacgag atccatgaca ccagtgtccg tgctcgtcac gtccaccacg ggtacatccg
     4081 gcgcgtgtcg ggacaaggcc tcggcgatcc gggcccggtc ggcgccgatc agtaccacgc
     4141 cccgcaggcg ccccgcggcg tcccggacga ggccctccac gtcggcgccc ttgagcaggc
     4201 cgccggccac ccacaccacg tggtcgaagg ccgcccggga agcggctgcg gcgtgcgggt
     4261 tggtggcctt ggagtcgtcg acgtaacgaa ccccgtcgag ctcgccgagg tccgcgatcc
     4321 gatgcggttg cggggtgtag gcccgcagcc cgtcccgcac cgcgaggggt ggcaccccgt
     4381 aggcgcgcgc caaggcggcc gcggcgagag cgttggcgag gtgatgcggg gccaggaccg
     4441 gaagcgaacc ctgcacgtcg gccagcgtgg ccagctcagc agcggaggtc ttgcgctgct
     4501 cgacgaaggc gcggtcggcg acgatgtcct ccacgacgcc gaccatcgag agcccgggcg
     4561 tgccgagcgt gaacccgatg gcacggcagc cctcctggac ctccgcctcc atgacgagcc
     4621 gctcggtggc cgggtcctcg acgttgtaga cgcaggcgac cttggtgttc gcatagacct
     4681 tgcccttggc ccgggtgtac tcctccagcg agccgtgcca gtcgaggtgg tcgggagcca
     4741 cgttgaggca ggccgatgcg tacggctgca gcgagtccga ccagtgcagc tggaagctgg
     4801 agagctcaac agcgatgacg tcgtacggct gcgggtgcag gacggcctcg aggatgggag
     4861 tgccgacgtt gcccgccgca gtggcgcgca gcccggcagc ccgcagcatc gaggcgagca
     4921 tcgtcaccgt ggtcgtcttg ccgttggtgc cggtgatcgt gagccacgga gccggtccga
     4981 ccgcaggcct catccgccag gccagttcga cctcacccca gaccggtatg ccggcctgct
     5041 cggcggcggc gagtagggcc tggtccgggc gccagcccgg cgaggtgacc accaggtctg
     5101 gtggtggacc tgcgggcagc tcggcgacgt gctccggacc gagccggacg tccacgccga
     5161 ggatgtcgag gattcgggcg cgctcaccga gctggctgtt ctgcaccggg tcgccgccgt
     5221 cgacggccac cacccgggcg cctcgctcgt ggagggcgtc ggccgcggcg aaaccgctga
     5281 cgcccaggcc cgccacgatc acccgaaggc cgttccagtc cgccgcaccg ttcgtcagcc
     5341 cgtcgaggcg accacccacg gcgccagcgc caatggctcc gctcacgatg ctcctacaac
     5401 ccattccgcg tagaacaacc cgaggcccaa cgccacgaac agtccggc
//
LOCUS       DASYFY010000175         2356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1537236, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000175 DASYFY010000000
VERSION     DASYFY010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537236"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1266)
                     /locus_tag="VGN19_03360"
     CDS             complement(<1..1266)
                     /locus_tag="VGN19_03360"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7194956.1"
                     /translation="MIEGTPVLLGGRRPRVVIVGAGFGGLTAARALRYVPVDVLLVDV
                     NNYHLFTPLLYQVASSLLDPSEVAQPVRALVRPLHNCEFKMARVTGADIRAQVLHTDA
                     GDEPYDYLVLATGSESNFFGNQSLERHATGLKQLPEGLAIRNWVISCFERARWSADPA
                     ERQRLLTFAVVGGGPTGVEYAGALSELVRLVLRKDYRNLDVSQVRVVLLEGASHLLGA
                     FEPRLRDAAARSLRNKGVDVWFDALVKEVGDGGLELRDGRLLEAGTVIWTAGVRATDL
                     GHQLGLEVSRSGRLRVGPTLQVPGHPEVFAIGDLASFEQAGQELPMLIPVAMQQAKHV
                     GRAVRDLMTGKAVRPFAYRDPGIMATIGRNSGVAQLGPIRLSGFLGWLMWLGVHLINI
                     VTFRNRVAVLLNWIWDYFFYDRPVRIIVRS"
     gene            complement(1280..2287)
                     /gene="ligD"
                     /locus_tag="VGN19_03365"
     CDS             complement(1280..2287)
                     /gene="ligD"
                     /locus_tag="VGN19_03365"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEV7194957.1"
                     /translation="MSPKSTDVEVEIEGRTLKLTNLDKVLYPVPGFTKGQVIDYYTRI
                     APALLPHLRGRPLTLKRYPNGVDSEFFFEKNCPKHRPPWVHTAAVWSWGNDRWMDYCV
                     ADDLPTLVWVANLASLELHTSLSLGKKIEQPRHLVFDLDPGPPADIVDCCRVGLWVRD
                     LFEENGMKCFPKTSGSKGLQLYVPLNTPVDYTRTKEVSKGIAMHFERERPEHVVHKQL
                     KDLRGGKILIDWSQNDQYKTTVNVYSLRAREQPTVSTPVTWEEVENCLELEDASALRF
                     TSDQVLERVEKMGDLFEPVLTLKQKLSASLPVTEAPKRRAGTPRGGGRGRQRPSTARE
                     A"
BASE COUNT          370 a          811 c          800 g          375 t
ORIGIN      
        1 tgagcgcacg atgatgcgaa ccggccggtc gtagaagaag tagtcccaga tccagttcaa
       61 gagcacggcc acgcggttgc ggaaggtcac gatgttgatc aggtgcactc ccagccacat
      121 cagccatccg aggaatccgg acagcctgat cggtcccagc tgcgccaccc cggagttgcg
      181 gccgatggtg gccatgattc ccgggtcgcg gtaggcgaac gggcggaccg ccttgccggt
      241 catcaggtca cggaccgcgc ggcccacgtg cttcgcctgc tgcatggcga ccgggatcag
      301 catcggcagc tcctggccgg cctgctcgaa ggacgccagg tcgccaatcg cgaacacctc
      361 cgggtgtccg ggcacctgca gcgtgggacc cacccgcagg cggcccgacc gggagacctc
      421 gagtccgagc tggtgcccga ggtcggtggc gcggacgccc gccgtccaga tcacggtccc
      481 cgcctcgagc agccggccgt cgcgcagctc cagcccgccg tcgccgacct ccttgacaag
      541 cgcgtcgaac cacacgtcca cgcccttgtt ccgcagcgaa cgcgcggcgg catcgcgcag
      601 ccggggctcg aacgcgccga gcaggtgcga cgcgccctcc agcaggacga cccgaacctg
      661 cgacacgtcc aggttgcgat agtccttccg caacaccagg cgcaccagct cggacagcgc
      721 gcccgcgtat tcgacgccgg tggggccgcc gccaaccact gcgaaggtga ggagccgctg
      781 cctttccgcg gggtcggccg accagcgagc ccgttcgaag cagctgatca cccaattgcg
      841 gatcgccagc ccctcgggca gctgcttgag ccccgtcgcg tgtcgctcga ggctctggtt
      901 tccgaagaag ttgctctcac tcccggtcgc caggacgagg tagtcgtacg gctcgtcgcc
      961 ggcgtccgtg tgcaggacct gcgcccggat gtcggcgccg gtcacccgcg ccatcttgaa
     1021 ctcgcagttg tggagcggtc gcaccagcgc ccggaccggt tgggcgacct ccgaggggtc
     1081 aagcagcgac gaggccacct ggtagagcag cggcgtgaag aggtggtagt tgttgacgtc
     1141 gacgagcagc acatcgaccg ggacgtacct cagcgcgcga gcggccgtca acccgccgaa
     1201 gccggcgccc acgatgacga cgcggggccg ccggccgccc agcagcacgg gcgtgccctc
     1261 gatcaccggg ccgaggccct catgcctccc tggccgtcga agggcgctgc ctgccccggc
     1321 cacctccgcg cggcgtcccg gcccgtcgct tgggggcctc ggtcacgggg aggctggcgg
     1381 acagcttctg cttgagggtg agcaccggct cgaagaggtc gcccatcttc tcgacccgct
     1441 cgagcacctg gtcggaggtg aagcgcagcg ctgacgcgtc ctcgagctcg aggcagttct
     1501 cgacctcctc ccacgtgacc ggcgtcgaca ccgtgggctg ctcccgcgcc cgcagcgaat
     1561 agacgttgac ggtggtcttg tactggtcgt tctgactcca gtcgatcagg atcttgccgc
     1621 cgcggaggtc cttcagctgc ttgtggacga cgtgctccgg ccgttcgcgc tcgaagtgca
     1681 tggcgattcc cttcgacacc tccttggtgc gggtgtagtc gaccggtgta ttgagcggga
     1741 cgtagagctg cagccccttc gacccggacg tcttggggaa gcacttcatg ccgttctcct
     1801 cgaagaggtc gcgcacccag aggcccaccc ggcagcagtc gacgatgtcg gcgggcggtc
     1861 ccgggtcgag gtcgaacacc aggtggcgcg gctgctcgat cttcttgccc aggctgagcg
     1921 aggtgtgcag ctcgagcgag gccaggttgg cgacccagac cagcgtcggc aggtcgtcgg
     1981 cgacgcagta gtccatccag cggtcgttgc cccaactcca caccgcggcc gtgtggaccc
     2041 agggcggccg gtgcttgggg cagttcttct cgaagaagaa ttcgctatcg acgccattgg
     2101 ggtagcgctt gagggtgagg ggtcggccac ggagatgggg cagcagcgcc ggcgcaatgc
     2161 gggtgtagta gtcgatcacc tgccccttgg tgaagcccgg gactggatag agcaccttgt
     2221 caaggttggt gagcttcagc gtccggccct cgatctcgac ctcaacgtca gtcgacttgg
     2281 ggctcatgcc accgcctcgc aacggcgcgg attctgtggc gcgatcactt cacggggacc
     2341 tcgcgtacga cctggc
//
LOCUS       DASYFY010000176         2495 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_854487, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000176 DASYFY010000000
VERSION     DASYFY010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854487"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VGN19_03370"
     CDS             complement(<1..724)
                     /locus_tag="VGN19_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009073096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194958.1"
                     /translation="MPNPDTAATPAATDTATGSEAAVAGGAGTATSPAVSPARMHRAL
                     ESLHSLVYFAPEVEEELVAAGLRPGRMCYFASRSAPLGAVTAGVTAATFYNFNPELVA
                     RHIPRAWTLASPEQVISARLAGVDRAMRRLLGEALGTPAVAEAAGLARAATVGLDPAG
                     RPLYAGHAGLDWPEAPHLELWHAATLLREFRGDGHLAALLSSGLSGIEAIITHTATGR
                     GFTVESAKLLRGWSDEQWEAAID"
     gene            930..>2495
                     /gene="dnaK"
                     /locus_tag="VGN19_03375"
     CDS             930..>2495
                     /gene="dnaK"
                     /locus_tag="VGN19_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017200037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEV7194959.1"
                     /translation="MARAVGIDLGTTNSVVAVLTGGEPEVIANAEGSRTTPSVVAFAK
                     NGEVLVGEVAKRQAVTNVDRTIRSVKRHMGTDWSVGIDDKKYTAQEISARVLQKLKRD
                     AEAYLGETITDAVITVPAYFNDAERQATKEAGTIAGLNVLRIVNEPTAAALAYGLDKG
                     EKEQTILVFDLGGGTFDVSLLEIGDGVIEVKATSGDNHLGGDDWDQKVIDWLVEKFKG
                     AHGIDLTKDKMAMQRLREAAEKAKIELSSSQQTSINLPYITVDTEKNPLFLDEQLSRS
                     EFQRITADLLERTKVPFQNVLRDADIPLDKIDHVVLVGGSTRMPAVVDLVKELTGGRE
                     PNKGVNPDEVVAVGAALQAGVLKGEVKDVLLLDVTPLSLGIETKGGIMTRLIERNTTI
                     PTKRSEIFTTADDNQSSVQIQVYQGEREIAAYNKKLGMFELTGLPPAPRGVPQVEVTF
                     DIDANGIVHVSAKDMASGNQQGMTITGGSGLSKDEIDRMMKEAEAHADEDKARREAAE
                     IRNSGEQLVYQTEK"
BASE COUNT          456 a          828 c          858 g          353 t
ORIGIN      
        1 cgtcgattgc cgcctcccac tgctcgtctg accagccgcg cagcagcttc gcagattcca
       61 cggtgaagcc gcgcccggtg gcggtgtggg tgatgatggc ctcgatgccc gacagccccg
      121 acgacagcag ggcggcgagg tggccgtcgc cccggaactc acgcagcagc gtggctgcgt
      181 gccagagctc gagatgtggg gcctcgggcc agtccagtcc ggcgtggccg gcgtagagcg
      241 gccggccggc cgggtccagg ccgacggtgg cggctctggc cagtcctgcc gcctcggcca
      301 ccgcgggggt gccgagcgcc tcgccgagca agcgtcgcat cgcccggtcg acgcccgcga
      361 gcctggccga gatcacctgc tcgggactgg ccagcgtcca ggcgcgtggg atgtggcgcg
      421 ccaccagctc cgggttgaag ttgtagaacg tcgcagccgt gacccccgcg gtcacggctc
      481 cgagcggggc cgacctgctc gcgaagtagc acatccggcc cgggcggagg ccggcggcga
      541 ccagctcctc ctcgacctcg ggagcgaagt agacgaggga gtgcagcgat tcgagcgcgc
      601 gatgcatccg cgccggcgag acggccggcg acgttgcggt tcctgcgccc ccggcaacgg
      661 cggcctcact gcctgtcgcg gtgtcggtag cagcgggggt agcagcggtg tcggggttgg
      721 gcacctggcc actctagagc ccggtatcgg gcgcgggagg ggcacgatgt gaccggtaac
      781 acactgattg cgggaacttg agccgaccag actcagttct tttgacagag ggttcatcca
      841 cgtagcacca tgaggacgga cctcagagcg cctcctgcga cgtggggggc cgttaggaac
      901 ctgttccacc cgagattgag gagtcatcca tggcacgcgc ggtcggtatt gacctgggca
      961 ccaccaactc cgtcgtcgcc gttctgaccg gtggcgagcc ggaggtcatc gccaacgccg
     1021 agggctcgcg gacgaccccg tcggtcgtcg ccttcgccaa gaacggcgag gtgctggtcg
     1081 gcgaggtggc aaagcgtcag gccgtcacca acgtcgaccg gaccattcgt tcggtcaagc
     1141 gtcacatggg caccgactgg tcggtgggca tcgacgacaa gaagtacacc gcgcaggaga
     1201 tcagcgcccg cgtcctgcag aagctcaagc gggacgccga ggcctacctg ggtgagacga
     1261 tcaccgacgc ggtgatcacc gtccccgcct acttcaacga cgccgagcgc caggcgacca
     1321 aggaagccgg caccatcgcc ggcctgaacg tgcttcggat cgtcaacgag ccgaccgccg
     1381 cggcgctggc ctacggcctg gacaagggcg agaaggaaca gaccatcctc gtgttcgacc
     1441 tcggtggtgg caccttcgac gtctcgctgc tggagatcgg cgacggcgtc atcgaggtca
     1501 aggcgacctc tggcgacaac cacctcggtg gcgacgactg ggaccagaag gtcatcgact
     1561 ggctggtcga gaagttcaag ggcgcgcacg gcatcgacct gaccaaggac aagatggcga
     1621 tgcagcggct gcgcgaggcg gccgagaagg ccaagatcga gctgtccagc tcgcagcaga
     1681 cctcgatcaa cctgccctac atcaccgtcg acaccgagaa gaacccgctg ttcctcgacg
     1741 agcagctcag ccgctcggag ttccagcgga tcaccgccga cctgctcgag cgcaccaagg
     1801 tgccgttcca gaacgtcctt cgcgacgccg acatcccgct cgacaagatc gaccacgtgg
     1861 ttctggtcgg tggctccacc cggatgcccg ccgtcgtcga cctggtcaag gagctgaccg
     1921 gtggccgcga gccaaacaag ggtgtcaacc ccgacgaggt cgtcgcggtc ggcgctgccc
     1981 tgcaggccgg tgtgctcaag ggtgaggtca aggacgtcct gcttctcgac gtgaccccgc
     2041 tctcgctggg tatcgagacc aagggcggca tcatgacccg gctgatcgag cgcaacacga
     2101 ccatcccgac caagcgctcg gagatcttca ccacggccga cgacaaccag tcgagcgtgc
     2161 agatccaggt gtaccagggt gagcgcgaga tcgcggccta caacaagaag ctcggaatgt
     2221 tcgagctgac aggcctcccg ccggccccgc gcggcgtgcc gcaggtcgag gtcacgttcg
     2281 acatcgacgc caacggcatt gtgcacgtct cggcgaagga catggcctcg ggcaaccagc
     2341 agggcatgac gatcaccggt ggctcgggcc tgtccaagga cgagatcgac cggatgatga
     2401 aggaggccga ggcgcacgcg gacgaggaca aggcgcgacg cgaggctgcc gagatccgca
     2461 actccggcga gcagttggtc taccagaccg agaag
//
LOCUS       DASYFY010000177         1821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1747147, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000177 DASYFY010000000
VERSION     DASYFY010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1747147"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1821)
                     /locus_tag="VGN19_03380"
     CDS             complement(<1..>1821)
                     /locus_tag="VGN19_03380"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7194960.1"
                     /translation="ELQRNYTALQARHRAAVDQWFTLAQRAEAPGVTPGQGSALQADA
                     MRQFAVFRTANRTLYSAIRTERDRARTGSRDSIAGVALVVTVTAVVATALTLFALRLL
                     RGSLSEPLERLRAVLERQRSGDRDALADVNTGAAEVRELAADFNGLTRANQVLQEQQA
                     QVLLSHQLALDVARQVHSATDIDTAMHAVCAMLGEGLAADRVLLYTHDESGHIEARMQ
                     WHRYDLPDLPPLPRSLAQRVHEVNEELRRDASFFALTDFLAPDVQATPRAEGFYRATG
                     ARSLLMVPVGAGEQGLGVLSILMVDGPRRWRRHEIQSAQQCAGYVAQAIVALRLTQMA
                     EIQVLRLTELDRQKTDFMATVSHELRTPLTSINGYIELLEDGDYGQLTDAQRSVLSII
                     ERNATRLRGLIEDLLVLNKIEATGLHLAVEDVRVADLVGGVVDMLRPVAESSGVELTA
                     EQVDEDLVVRVDRGQLERTLINLGANAVKFTPRGGTAQVTACRADDHVVISVSDTGIG
                     IPEADLSRLFDRFYRATNATAAAIPGTGLGLAIAKAIVEGHGGELGVESVEGEGTTML
                     VSLPLVDRSHPEEPGPDPQSSAGPQSSALAQPAQPRNSAG"
BASE COUNT          251 a          647 c          650 g          273 t
ORIGIN      
        1 cccctgcgga attccgcggc tgggccggct gggccaaggc gctggactgc gggcccgcgc
       61 tggactgcgg gtcggggccg ggctcctccg ggtgggagcg gtcgaccagc ggaagcgaca
      121 ccagcatcgt cgtgccctcg ccctccaccg actccacgcc gagctcgccg ccgtggccct
      181 cgacgatcgc cttggcgatg gccaggccca acccggtgcc cgggatcgcg gcagccgtcg
      241 cgttggtggc gcgatagaag cggtcgaaca ggcgcgacag gtcggcttcg gggatgccga
      301 tgccggtgtc cgagacgctg atgacgacgt ggtcgtccgc tcggcaggcc gtcacctgcg
      361 ccgttccgcc gcgcggggtg aacttcaccg cgttggcgcc caggttgatg agggtccgct
      421 cgagctggcc ccgatcgacc ctcaccacga ggtcctcgtc gacctgctcg gcggtcagct
      481 cgaccccgct gctctccgca acaggccgca gcatgtcgac cactcccccg accaggtccg
      541 ccacgcggac gtcctcgact gccagatgaa gcccggtcgc ctcgatcttg ttgaggacca
      601 gcaggtcctc gatcagtccc cgcaggcgcg tcgcgttgcg ctcgatgatc gacaggacgc
      661 tgcgctgcgc atccgtgagc tggccgtagt cgccgtcctc gagcagctcg atgtacccgt
      721 tgatcgacgt cagcggggta cgcagctcgt gggagacggt ggccatgaag tcggtcttct
      781 gccggtcgag ctcggtgagg cgcaggacct ggatctccgc catctgcgtc agtcgcagcg
      841 cgacgatcgc ttgggccacg tacccggcac actgctgggc ggactggatc tcgtgccgcc
      901 gccagcggcg cgggccgtcg accatgagga tcgacagcac cccgagtccc tgctcacccg
      961 cgcccaccgg gaccatcagc aggctgcggg ctccggtggc gcggtagaag ccctccgccc
     1021 gaggcgtcgc ctgcacgtcc ggggccagga agtcggtcag cgcgaagaag ctggcatcgc
     1081 gccgcagctc ctcgttaacc tcgtggacgc gttgcgccag cgaccgaggc agcggcggca
     1141 ggtccggcag gtcgtagcgg tgccactgca tgcgggcctc gatgtggcca ctctcgtcgt
     1201 gggtgtagag cagcacgcgg tcggcggcga gcccctcgcc gagcatcgcg cagaccgcgt
     1261 gcatggcagt gtcgatgtcg gtcgcactgt gcacctgacg ggccacgtcg agggcgagct
     1321 ggtgggacag gagcacctgc gcctgctgtt cctggagcac ctggttggcc cgggtgagcc
     1381 cgttgaagtc ggcagccagc tcgcgcacct cggcggcgcc ggtattcacg tcggccaggg
     1441 cgtcccggtc acccgaccgc tggcgctcga ggacggcgcg cagccgctcc agcggctctg
     1501 acagcgaccc ccgcaggagg cgcagggcga acagggtcag tgccgtggcc acgaccgccg
     1561 tgaccgtcac gaccaacgcc actcccgcga tggagtcgcg ggaaccggtt ctagcccggt
     1621 cgcgctcggt gcgaatggcg ctgtagagcg tgcggttcgc ggtccggaac accgcgaact
     1681 gccgcatcgc gtcggcctgg agcgcactgc cctggccggg cgtgaccccc ggcgcctcgg
     1741 cgcgctgcgc gagggtgaac cactggtcga cagcggcccg atgcctggct tgcagcgcgg
     1801 tgtagttccg ctgcagctcg g
//
LOCUS       DASYFY010000178         1584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1589654, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000178 DASYFY010000000
VERSION     DASYFY010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1589654"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1575)
                     /locus_tag="VGN19_03385"
     CDS             complement(<1..1575)
                     /locus_tag="VGN19_03385"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEV7194961.1"
                     /translation="MSVEVQPATMATKQVALNDVMTTTSDAVDSGLLKFSSGSVIGTG
                     GAVQSPTQRIGVRNTLGIVTPDDLAKIPVPTAQPGGYATLGDIATVKWDNQPLIGSAV
                     IDGNPGLLFVVEKLPWANTLEMTKGVDDAISSLKPGMPGVTFNTTIFRQADFIEMAID
                     NLSQALVLGFLLVVVILGLFLFEWRVALISMVTIPLSLVATMLVLYLRGATINTMTLA
                     GLVIALGAVVDDAIIDVENVVRRLRQHRLAGSDRSTASIILEASLEVRSPIVYATLII
                     GAAAIPVFMLQGLTGAFFQPLATSYVLAILASMAVAVTVTPALALIMLAKAPIEKHVS
                     PVVTWLQRGYQAALSRIVVHPSQAYAAAAVILLAGIVVAPQLGQSLFPAFKERDLLNL
                     GDRVGVVDVRVEADPVLAEVDAGHLLAEAGLADVRADTAHARDRLQLAVDLRGGAFHV
                     GDRGARGGDPVHQQVAFLERREQGLSQLGGDDDAGQQEDRCRGIRLAGVDDDPGQGRL
                     VAPLQPGDDRGDVLLDR"
BASE COUNT          261 a          498 c          586 g          239 t
ORIGIN      
        1 ccgatcgaga agcacgtctc cccggtcgtc acctggctgc aacggggcta ccaggcggcc
       61 ctgtcccgga tcgtcgtcca ccccagccag gcgtatgccg cggcagcggt cctcctgctg
      121 gccggcatcg tcgtcgcccc ccagctggga cagtccctgt tcccggcgtt caaggaacgc
      181 gacctgctga tgcactgggt ctccgccccg ggcacctcga tcgccgacat ggaacgcacc
      241 accgcgcagg tcgaccgcga gctgcaggcg atcccgggcg tgcgcagtgt cggctcgcac
      301 atcggccagg cccgcctcgg cgaggaggtg gccggcgtca acctcggcga gaactggatc
      361 agcctcgacc cgaacgtcga ctacaccgac acggtcgcca aggttcagca ggtcgcgttc
      421 cttgaacgcc gggaacaggg actgccccag ctggggggcg acgacgatgc ccgccagcag
      481 gatgaccgct gccgcggcat acgcctggct ggggtggacg acgatccggg acagggccgc
      541 ctggtagccc cgttgcagcc aggtgacgac cggggagacg tgcttctcga tcggggcctt
      601 ggcgagcatg atcagcgcca acgccggtgt cacggtgacg gcaaccgcca tcgacgccag
      661 gatggcgagc acgtaggagg tcgcgagcgg ctggaagaag gcaccggtca ggccctggag
      721 catgaagacc gggatcgcgg cggccccgat gatgagggtg gcgtagacga tcgggctgcg
      781 cacttcgagc gaggcctcga ggatgatcga cgcggtggac cggtcgctgc cggccaggcg
      841 gtgctgtcgc agccggcgga cgacgttctc gacgtcgatg atcgcgtcgt cgacgacggc
      901 gccgagggcg atgaccagcc cggccagggt catcgtgttg atggtcgcgc cacgcaggta
      961 caggacgagc atggtggcca ccagcgacag cgggatggtc accatgctga tgagggcgac
     1021 ccgccattcg aagaggaaca gcccgaggat gacgacaacc aggaggaagc cgaggaccag
     1081 ggcctgcgag aggttgtcga tggccatctc gatgaagtcg gcctggcgga agatggtggt
     1141 gttgaaggtg acgccgggca tgcccggttt gagcgagctg atcgcgtcgt cgacgccctt
     1201 ggtcatctcc agggtgttgg cccacggcag cttctcgacg acgaacagca gaccggggtt
     1261 gccgtcgatg accgccgagc cgatgagcgg ctggttgtcc catttcacgg tggcgatgtc
     1321 gccgagcgtc gcgtagccgc cgggttgggc ggtggggacc gggatcttgg ccaggtcgtc
     1381 cggggtgacg atgccgaggg tgttgcggac cccgatccgc tgggtcgggc tctggacggc
     1441 gccgccggtg ccgatgacgc tgccgctgga gaacttcagc agcccggagt cgacggcgtc
     1501 cgacgtggtg gtcatgacgt cgttgagggc cacctgcttg gtggccatcg tcgcgggctg
     1561 gacctcgacg gacagctgtt ggaa
//
LOCUS       DASYFY010000179         1541 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_486336, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000179 DASYFY010000000
VERSION     DASYFY010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486336"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VGN19_03390"
     CDS             complement(<1..685)
                     /locus_tag="VGN19_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194962.1"
                     /translation="MAPLPSAPGTHGTHELHWDPAAERLVALARNAHRNVDHQDLRDD
                     ITTDDVDYWYRLGQRNAYAHAAGILIGRGVDSTAFAVSERLTAALEAGVTDLSPLRSH
                     VLGGLMVGRLRQSPTWLGPVAFRAQYGSDHNTYRGIDHDYGMRWGAAGDQRISLRHPP
                     GAEHGLLYAYDPTWDEYAVLSRAVSVQAVQAAFTQAVATDPHLAVTDFAALVTALDVA
                     NTLQAVAPHE"
     gene            complement(795..1244)
                     /locus_tag="VGN19_03395"
     CDS             complement(795..1244)
                     /locus_tag="VGN19_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194963.1"
                     /translation="MSGQLPLGLDGQLYVGLGQDPFGELDSPVHWPSLTGQERDRRMV
                     QLQEWVDQLVARFALDTRVVPPCWGRHNAMVEALSALRDHERASYHQTAPPTAAVDWL
                     RALRDVESMLRAVAGQTQCTAQTHRSEIRRDIRRVSRPTDPPDSQTD"
     gene            complement(1241..>1541)
                     /locus_tag="VGN19_03400"
     CDS             complement(1241..>1541)
                     /locus_tag="VGN19_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194964.1"
                     /translation="CGCRWSLRSGQLHHATYMRLRNEEPDDLVPLCAAHHARLHELWD
                     GSPQWRAVGRAAATYGIIALLRRQLEAPEEPETHATPHTTASITVGAVAKAGSVS"
BASE COUNT          198 a          476 c          612 g          255 t
ORIGIN      
        1 gctcatgagg ggcgacggcc tggagagtgt ttgccacgtc cagggcggtg acgagagcgg
       61 cgaagtcggt gaccgccagg tgggggtcgg tggcgaccgc ctgggtgaag gcggcctgga
      121 cggcctgcac gctcacggcc ctggacagga cggcgtactc gtcccaggtc gggtcgtatg
      181 cgtacagcag gccgtgttcg gcgccgggtg ggtggcgcag cgagatccgt tggtcgccgg
      241 cggcgcccca ccgcatgccg tagtcgtggt cgatgccacg gtacgtgttg tggtccgacc
      301 cgtactgggc tcggaaggcg acaggtccca gccaggtcgg tgactgcctg agtctcccga
      361 ccatcaggcc gcccagcacg tgggagcgga gcgggctgag gtcggtgacg cctgcctcga
      421 gggcggcggt gaggcgttcg gagacggcga aggcggtgga gtcgacgccg cggccgatga
      481 ggatgccggc ggcgtgggcg taggcgttgc gctggccgag gcggtaccag tagtcgacgt
      541 cgtcggtggt gatgtcgtcc ctgaggtcct ggtggtcgac gtttcggtgg gcgttgcgcg
      601 ccaacgcgac gaggcgttcg gcggccggat cccagtgcag ctcatgcgtg ccatgggtgc
      661 caggggctga gggcagtggt gccatgggtg cctctctcgc gcaggcggct cctgcgctcg
      721 atctggctac gcgcggccgg gggcaccatc cccggtttgg gccagcgact tcgaacgcga
      781 catgggacgg gtggtcaatc cgtttggctg tcagggggat ccgtggggcg ggacaccctg
      841 cggatgtcac ggcggatctc gctgcggtgg gtttgggcgg tgcactgggt ttggccggcg
      901 acggcccgca gcattgactc gacgtcccgc aacgcccgca gccagtcgac ggccgcggtc
      961 ggtggcgccg tctggtggta ggaggctcgc tcgtggtctc gcagcgcgga gagggcttcg
     1021 accatcgcgt tgtgccgtcc ccagcacggc gggaccactc gggtgtcgag cgcgaaccgg
     1081 gccaccagct ggtcgaccca ctcctgcagc tggaccatcc ggcggtcgcg ttcctgtccg
     1141 gtgagggacg gccagtgcac cgggctgtcc agctccccga acggatcctg gccgagacct
     1201 acgtatagct gtccgtcgag tccgagtggc agctgcccgc tcacgacaca gacccggcct
     1261 tggcgacggc cccgacagtt atggatgctg tggtgtgtgg ggtggcgtgc gtttcgggtt
     1321 cttcgggtgc ctcgagctgg cggcggagca gggcgatgat gccgtaggtg gcggcagctc
     1381 ggcccaccgc ccgccactgc ggcgacccgt cccacagttc gtgcagccgg gcgtgatggg
     1441 ccgcgcagag cgggaccagg tcgtcgggct cctcgttgcg gaggcgcatg taggtggcgt
     1501 ggtgcagctg cccggaccga agcgaccacc ggcacccgca c
//
LOCUS       DASYFY010000180         2082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1642398, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000180 DASYFY010000000
VERSION     DASYFY010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1642398"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..512
                     /gene="nirD"
                     /locus_tag="VGN19_03405"
     CDS             69..512
                     /gene="nirD"
                     /locus_tag="VGN19_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015883283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008942 - nitrite reductase [NAD(P)H]
                     activity [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HEV7194965.1"
                     /translation="MTVDLHAEALTTTVTEMTEVCRLDDLSRERGVAALVGAVQVALF
                     RTFDDVVYAVQQRDPYSGANVMSRGIVGSRGDTPTVASPMYKQVFDLRTGECLDPVGK
                     EPRRLMSYPVVVRDGAVLVTGAVLAGAPRAAREAWAAGDAAGAGP"
     gene            533..1624
                     /locus_tag="VGN19_03410"
     CDS             533..1624
                     /locus_tag="VGN19_03410"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEV7194966.1"
                     /translation="MAGCVVLVTADRRSAELASALTRRGATVRHAAALSIVPHEHDEE
                     LLLATKTLLESPADIVVITTGIGFRGWIEAADAAGLADALVGTLGSARLIARGPKANG
                     AIQAAGLQADWVAESETSAEILDLLLAEGVSGQRVAVQHHGAGADGLDTELAAAGAEV
                     HSLVVYRWGPPPDPVALRLSVVAAAAGEIDAAVFTSAPGAAAWLAEVDAQGLGDEIYS
                     RLRSGAMLAAAVGPITAKPLQDRGVEPIMPDRGRLGALVRALVSHYEQAQSTAVATQA
                     GPLQVRRTVALLDGHVVPVSPSGLEVLRLLTEANGDVVSREQVLAVLPGESLDPHAAE
                     VAVARLREVCGGRALIQTVVKRGYRLAVS"
     gene            complement(1663..>2082)
                     /gene="folE"
                     /locus_tag="VGN19_03415"
     CDS             complement(1663..>2082)
                     /gene="folE"
                     /locus_tag="VGN19_03415"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HEV7194967.1"
                     /translation="RSFDLTTFPNDEHYDELVLARAIPVHSVCEHHMLPFVGVAHVGY
                     LPGERILGLSKLARVVELFARRPQVQERLTAQIAGWLQEQLQPAGVGVVIEAEHFCMT
                     LRGVRAGGASTITSALRGRLRDDARSRAEFLALTRAG"
BASE COUNT          308 a          696 c          758 g          320 t
ORIGIN      
        1 cctgcaacgg attccgagcg tgagcagggt ggggtcctga tcgctggcac gaccctggag
       61 gtgcgtcgat gaccgtggac ctacacgccg aggcgctgac aacgacggtg accgagatga
      121 ccgaggtatg ccgcctggac gacctgtcga gggaacgcgg cgtggccgcg ctggtgggcg
      181 ccgtgcaagt ggcgctgttc cgcaccttcg acgacgtcgt gtatgccgtg cagcagcgag
      241 acccgtacag cggcgcgaac gtgatgtccc gcggcatcgt cggttcccgg ggggatacgc
      301 ctaccgtcgc gtcaccgatg tacaagcagg tcttcgacct gcgcaccggc gaatgtctcg
      361 accccgtcgg taaggagcct cgccgcctga tgagctaccc cgtcgtggtg cgcgacggtg
      421 cggtccttgt gactggtgct gtcctagccg gggcaccaag ggcagcacgg gaagcgtggg
      481 cggctgggga cgccgccgga gccggcccgt gacggcgcgg ctgggccagg tgatggcggg
      541 gtgtgtcgtc ctggtgacgg ccgaccgccg ctcggcagag ctggcctcgg cactgacccg
      601 ccgaggcgcg accgtcaggc acgccgctgc cctgagcatc gtcccccacg agcatgacga
      661 agagctgctg ctcgccacca agacgctgct ggagtccccg gctgacatcg tggtgatcac
      721 gacgggaatc ggcttccgtg gctggatcga ggccgccgac gcggccggac tcgcggatgc
      781 gctcgtgggc accctgggca gtgcacgcct catcgctcgc gggccgaagg ccaatggcgc
      841 gatccaggct gcgggtctcc aggccgactg ggtcgccgag tcggagacct ctgccgagat
      901 cctcgacctg ttgctcgccg aaggagtgtc cggccagcgc gtcgccgtcc agcatcacgg
      961 ggccggtgca gatggcctcg acaccgagct ggccgcggcg ggcgccgagg tgcatagcct
     1021 cgtggtctat cgctgggggc ctccgcctga tcccgtcgcc ctcaggctgt ccgtcgtcgc
     1081 agccgcagcg ggcgagatcg acgctgccgt cttcacctcc gcccccgggg ctgccgcctg
     1141 gctcgccgag gttgacgcgc aaggtctcgg tgacgagatc tactcgcggc tgcgttcggg
     1201 cgcgatgctg gccgcggcgg tgggccccat caccgcgaag ccgttgcagg acaggggagt
     1261 tgagccgatc atgccggacc gcgggcgtct cggtgcgttg gtccgtgccc tggtgagcca
     1321 ttacgagcag gcccagtcca cggcagtcgc cacccaggca ggaccgcttc aggtgcggcg
     1381 cacggtcgcc ctcctcgacg gtcacgtggt gccggtgtcg ccaagtggac tggaagtgct
     1441 gcgcctgctg accgaagcca atggcgacgt cgtcagccgc gaacaggtgc ttgccgtcct
     1501 gccgggggag tccctcgacc cgcacgccgc cgaggtggcc gtggctcgac tgcgggaggt
     1561 atgcggcggg cgtgccttga tccagacggt ggtcaagcgt ggctatcgcc ttgcggtgtc
     1621 gtgaccgccg ggtgcaactg gcgccgaggc ggaggacgcc actcagccgg cacgggtcaa
     1681 agccaggaac tcggcccgag atcgggcgtc gtctcgcagc cggccgcgaa gcgctgaggt
     1741 gatggtgctc gcaccaccgg cgcgcacgcc gcgaagggtc atgcagaagt gttcagcctc
     1801 gatgacgacg cccactcctg ccggttgcag ctgctcctgc agccaaccgg cgatctgcgc
     1861 cgtcaggcgt tcttgaacct gcgggcgacg ggcgaagagc tccaccacgc gggccagctt
     1921 ggacagtccg aggatgcgct ccccgggcag gtatcccacg tgggcaaccc ccacgaaagg
     1981 cagcatgtgg tgctcgcaca ccgaatgcac cgggatggcg cgggccagca cgagctcgtc
     2041 gtaatgctcg tcgttcggga acgtcgtgag gtcgaacgag cg
//
LOCUS       DASYFY010000181         1997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1116634, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000181 DASYFY010000000
VERSION     DASYFY010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1116634"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1430)
                     /locus_tag="VGN19_03420"
     CDS             complement(<1..1430)
                     /locus_tag="VGN19_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEV7194968.1"
                     /translation="MRVALTVADFLNRAALVYGHRVAVVDEPSVAGSFGAVTYNELEA
                     RARGLALALDDLGVVHGERVAIVSPNSARFLTAYFGVSGFGRILVPINFRLTADEIAY
                     IVDHSGASVLLYDADLEAEVSTIKVSHRFCLDGSDDAALFAPAAGGVAPMAWEPDEDA
                     TCSVNYTSGTTARPKGVQLTHRNCWLNAAMFGWHTGVSDRDVLLHTLPMFHCNGWGMP
                     YAVTGMGGTHIVLRKVDGEEILSRIERHGVTILCGAPAVVAAILSAAEARAADGRAVP
                     GRGSVRIVVAGAPPPSKTIERVETELGWEFIQIYGLTETAPLLTINRAPAEWDDLDPG
                     PRSQLLSRAGVPAVGVHITVDEEGEVLARSNHVFAGYWEQPIETAAALEDGWFHTGDG
                     GYLDDAYVVISDRKKDVIITGGENVSSIEVEDCLYQHTAVAEVAVIGVPDEKWGETIK
                     ALVVVRQGATVSEAELIAHCRDGLAH"
     gene            complement(1493..>1997)
                     /locus_tag="VGN19_03425"
     CDS             complement(1493..>1997)
                     /locus_tag="VGN19_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003803635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEV7194969.1"
                     /translation="FAWQFAKAQATAAGASGTRFVSMQNHYNLIYREEEREVIPLCLD
                     QGVGCIPWSPLARGVLAGNRTRDGGRLTTRSTTDTFTDYLYDQPTDFDVVDAAAEVAA
                     ARGVPTAQVSLAWLLSKPGVTAPIVGSTRKKHLKDALAAEALTLGADEIASLEKPYQP
                     HPVLGHF"
BASE COUNT          321 a          718 c          637 g          321 t
ORIGIN      
        1 aagtgggcca gtccgtcgcg gcagtgggcg atgagctcgg cttcggacac cgtcgcgccc
       61 tggcgcacca cgaccaacgc cttgatcgtc tcgccccact tctcgtcggg cacgccgatc
      121 accgccacct cggccaccgc ggtgtgctgg tacaggcaat cctcgacctc aatcgacgag
      181 acgttctcac cgccggtgat gatcacgtcc ttcttgcggt ccgagatgac cacgtaggcg
      241 tcgtcgaggt aacccccgtc gcccgtgtgg aaccagccgt cctcgagcgc cgccgcggtc
      301 tcgatgggct gctcccagta gccggcgaag acgtggttcg agcgggccaa tacctccccc
      361 tcttcgtcga cggtgatgtg cacgccgaca gccggcacac cggccctgct cagcagctgg
      421 gagcgcggcc cggggtccag atcgtcccac tccgcgggcg ctcgattgat ggtgaggagg
      481 ggcgcggtct cagtgagccc gtagatctgt atgaactccc acccgagttc ggtctcgacc
      541 cgttcgatcg tcttcgacgg cggcggcgcc ccggccacca cgatgcgcac gctgcctcgg
      601 ccaggcacgg cgcggccgtc cgcggcgcga gcctccgctg cgctcaaaat tgccgccacc
      661 actgccgggg ccccacacag aatggtcacc ccgtggcgct cgatgcgcga gaggatctcc
      721 tcgccgtcca ccttgcgcaa cacgatatgt gtgccgccca tgccggtcac cgcatagggc
      781 ataccccagc cgttgcagtg gaacatgggc agcgtgtgca acagcacgtc gcggtcgctc
      841 actccggtgt gccacccgaa catcgccgcg ttgagccagc agttacggtg cgtcagctgc
      901 acgcccttgg gccgcgccgt ggtgcccgat gtgtaattca ccgaacaggt ggcatcctcg
      961 tccggctccc acgccatcgg tgccacccct ccggcggccg gcgcgaagag cgcagcgtcg
     1021 tcactcccgt ccaagcagaa acgatggctc accttgatgg tgctcacctc agcctcgagg
     1081 tcggcgtcgt agaggaggac cgacgccccg gaatggtcga cgatataggc gatttcgtca
     1141 gccgtcagcc ggaagttgat aggcacgagg atgcggccga acccgctgac cccgaagtac
     1201 gcggtgagga agcgggctga attcgggctg acgatggcca cgcgctcgcc gtggaccacc
     1261 ccgaggtcgt cgagcgccag ggccaggccg cgcgccctcg cctccagctc gttgtaggtg
     1321 accgcaccga acgaaccggc caccgagggc tcgtccacga ccgccacccg atgcccgtag
     1381 accagcgcgg cccggttgag aaaatcggcc accgtcaacg cgacccgcat gccacccccg
     1441 atctctcgta ccgcctaccg ggggacccta gtggaccacc ccgcggtgtt ggctagaagt
     1501 gccccagcac agggtgcggc tggtacggct tctcgagcga ggcgatctcg tccgcgccca
     1561 gggtcagcgc ctcggcggcg agcgcgtcct tcaggtgctt cttccttgtc gatccgacga
     1621 tgggtgcggt caccccgggc ttggagagca accaggcgag ggacacctgt gccgtcggca
     1681 ccccgcgtgc cgccgcgacc tccgctgcgg cgtcgacgac gtcgaagtcg gtcggctggt
     1741 cgtagaggta atcggtgaag gtatccgtgg tcgagcgtgt cgtcagccga ccaccgtccc
     1801 gcgttcggtt accagccagg acccctctcg ccaaggggct ccaggggatg caccccaccc
     1861 cctggtcaag gcatagagga atcacctcgc gctcctcctc gcgatagatc aggttgtagt
     1921 ggttctgcat cgagacgaac cgcgtcccgc tcgcgccggc cgcggtcgcc tgggccttgg
     1981 cgaattgcca ggcgaac
//
LOCUS       DASYFY010000182         1506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1485144, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000182 DASYFY010000000
VERSION     DASYFY010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485144"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1174
                     /locus_tag="VGN19_03430"
     CDS             <1..1174
                     /locus_tag="VGN19_03430"
                     /inference="COORDINATES: protein motif:HMM:NF033592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEV7194970.1"
                     /translation="DTRERRRRLLPARLMTYFVLALWLFRGPNCGYGRVMVKLVDALY
                     HRRRGQELLEGALDPDGWVDAGEGRRWRPPNISSLARARTRLGADPLHMLFDEVAGPV
                     GGDAGGSCGDGMAGVFCCGLRVVSMDGSTTDVPNSPENADHFGRPSNATRDGAFPQVR
                     WLVAAESGTGALIGATLGPYTVGEQTLACDLLSSFTDDMLVLADRNFLSHALARDVLA
                     TGAHLLWRASASFRLTPVEVRSDGSYLAVLHPARKTDGEPITVRVIEYTVHTTTPDGV
                     EEPSEVFALVTDLLDPETFPAMDLACAYPMRWQCETVIGHHKTDMGQGVAVLRSKTPE
                     TVAQEMWALFAVYQAIRTLIGAAVDTIGIPPDQISFPHVLAAATDSVTAGFPPCAD"
BASE COUNT          218 a          542 c          509 g          237 t
ORIGIN      
        1 cgacacccgg gagcggcggc gccggttgct gccagcgcgg ctgatgacgt acttcgtgtt
       61 ggcgttgtgg ctgttccgcg gcccgaactg cggctacggg cgggtcatgg tcaagcttgt
      121 ggacgcgctg tatcaccgcc gccgcgggca ggaactgctc gagggtgcgc tggaccccga
      181 tggctgggtc gatgcgggcg aagggcggcg gtggcgacca cccaacatct cctcgctcgc
      241 gagggcccgc acgaggctgg gcgccgaccc gctgcacatg ctgttcgacg aggtcgccgg
      301 ccccgtcggc ggtgatgccg gcggcagctg cggtgacggt atggccgggg tgttctgctg
      361 cgggctgcgc gtggtgtcga tggatggctc caccaccgac gtgcccaact cgcctgagaa
      421 cgccgatcac ttcgggcgcc cgtcgaatgc gacccgggac ggcgcgttcc cgcaggtccg
      481 ctggttggtc gcggcggagt cgggcaccgg cgcgttgatc ggtgccaccc tcgggcctta
      541 caccgtcggc gagcagaccc tggcctgcga cctgctgtcg tccttcactg acgacatgct
      601 ggtgctggcc gaccgcaact tcctgtccca cgccctggcc cgcgacgtgc tggcgacggg
      661 tgcgcatctg ctgtggcggg cctcggcgtc gttccggctc accccggtcg aggtccgcag
      721 cgatggcagc tacctggccg tgctgcatcc cgcccgcaag accgacggcg aaccgatcac
      781 cgtgcgggtg atcgagtaca ccgtgcacac caccactccc gacggtgtcg aggagccttc
      841 ggaggtgttc gcgctggtca ccgacctgct cgaccccgag accttcccag cgatggatct
      901 ggcgtgcgcc tacccgatgc gctggcagtg cgagaccgtg atcggccacc acaagaccga
      961 catgggccag ggcgtagcag tgctgcgcag caagactccc gagaccgtcg cccaggagat
     1021 gtgggccctg ttcgctgtct accaggccat tcgcaccctc atcggcgccg cggtcgacac
     1081 catcggcatc ccgcccgacc agatcagctt cccgcacgtc ctggccgccg cgaccgactc
     1141 ggtcacggcg ggctttcccc cctgcgcaga ctgacctggc cttcgccacg ttcctgctca
     1201 agatcctcga ccccgggttc ttcgtccgcg accgacccga ccgggccagc ccccgcgcca
     1261 cgaagaaagc cggagacttc cccgcccgca aggaccgacc cagcgtcgtc cgcgtcaccc
     1321 gccgtctaca gatccactgc ctccagccac gacgagctcc ttaagacaag gccattgacc
     1381 tcacctgcca gtggcggtcg gtggcggtgg cggagtcggg gtggtcaggg ggaaatgcgc
     1441 cctggtgggc gacggagcgg cgaacgatgc gcaatgcgcg atcggccaac accagcatgc
     1501 ccgggg
//
LOCUS       DASYFY010000183         1598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1432088, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000183 DASYFY010000000
VERSION     DASYFY010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1432088"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1598)
                     /gene="katG"
                     /locus_tag="VGN19_03435"
     CDS             complement(<1..>1598)
                     /gene="katG"
                     /locus_tag="VGN19_03435"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HEV7194971.1"
                     /translation="LTGNVALESMGFKTFGFGGGRADVWEPDEDVYWGPETTWLDDER
                     YTGDRELEEPLGAVQMGLIYVNPEGPNGNPDPLAAARDIRETFRRMAMNDEETVALIA
                     GGHTFGKTHGAGPADSVGPDPEAAPLEQQGLGWKSTYGTGKGGDAITSGIEVTWTATP
                     VTWDNSFLETLYGYEWELTKSPADAYQWQPKDGAGAGTVPDAHDPSKRRPPTMLTTDL
                     SLRVDPVYEQITRRFLANPAEFADAFARAWFKLTHRDMGPVVRYLGPEVPAETLLWQD
                     PLPAVTHQPIGEGDIAFLKGQVLESGLTVPQLVSTAWAAASSFRGSDKRGGANGGRIR
                     LEPQSGWEVNEPDQLATVLRTLEGIQQAFNDSNTGGTQVSLADLIVLAGAVAVERAAR
                     DAGFDVRVPFTPGRADASQEQTDVESFASLEPKTDGFRNYLGKGNQLPAEYLLLDRAN
                     LLNLSAPEMTVLIGGLRVLGANYQRSPLGVFTTTPGSLTNDFFVNLLDMGTTWKPVSG
                     NAVSRDENTFEGRDASGGVKWTGS"
BASE COUNT          211 a          544 c          582 g          261 t
ORIGIN      
        1 ggctgccggt ccacttgacc ccgcccgagg cgtcgcggcc ttcgaacgtg ttctcgtccc
       61 tggacacagc gtttccagac acgggcttcc acgtcgtgcc catgtcgagc aggttgacga
      121 agaagtcgtt ggtcagcgac ccgggggtcg tggtgaagac gccgagcggc gaccgctgat
      181 agttcgcgcc caggacgcgg aggcctccga tgaggaccgt catttcgggg gcgctcaggt
      241 tgagcaggtt cgcccggtcg agcagcaggt actcggccgg cagctggttg cccttgccga
      301 ggtagttgcg gaacccgtcc gtcttcggct caagcgaggc gaacgactcc acgtcggtct
      361 gctcctgcga cgcgtccgcg cggcccgggg tgaagggaac ccggacgtcg aaaccggcgt
      421 ccctggcggc cctctcgacg gctacggcac cggccagcac gatcaggtcg gccagcgaga
      481 cctgcgtgcc gcccgtgttg gagtcgttga aggcctgctg gatcccctcc agggtgcgca
      541 gcaccgtggc cagctggtca ggctcgttga cctcccagcc gctctggggc tccaggcgga
      601 tgcgcccacc gttggcgccg ccgcgcttgt cgctgccacg gaaggacgag gccgcggccc
      661 acgcggtgga cacgagctgg ggcaccgtca ggcccgactc gaggacctgg cccttgagga
      721 aggcaatgtc cccctcgccg atgggctggt gcgtcaccgc ggggaggggg tcctgccaga
      781 gcagcgtctc ggccgggacc tccgggccga ggtagcgcac gaccgggccc atgtcgcggt
      841 gggtcagctt gaaccaggcc cgggcgaagg cgtccgcgaa ctcggccggg ttcgcgagga
      901 agcgccgggt gatctgctcg tagaccgggt ccacgcggag cgagaggtcg gtggtcagca
      961 tcgtcggggg gcggcgcttc gatgggtcgt gggcgtctgg gacggtgccc gccccggcgc
     1021 cgtccttcgg ctgccactgg taggcgtcag cagggctctt ggtcagctcc cactcatagc
     1081 cgtacagggt ctccaggaag ctgttgtccc acgtcacggg ggtagcagtc caggtaacct
     1141 caatgccgct cgtgatggcg tcgccgccct tgccggtgcc gtaggtgctc ttccagccga
     1201 ggccctgctg ctcgagcggg gcggcctcgg ggtcggggcc gacgctgtcc gccgggcccg
     1261 cgccgtgggt cttgccgaac gtgtgaccgc ccgcgatcag cgcgaccgtc tcctcgtcgt
     1321 tcatcgccat ccggcggaac gtctcgcgga tgtcgcgggc cgcggcgagc gggtccgggt
     1381 tgccgttcgg gccctccggg ttgacgtaga tgagacccat ctggaccgcg ccgagcggct
     1441 cctcgagctc ccggtcgccg gtgtagcgct cgtcgtcgag ccaggtggtc tcgggacccc
     1501 agtagacgtc ctcgtccggc tcccagacgt ctgcccggcc accgccgaag ccgaaggtct
     1561 tgaagcccat cgactccagc gcgacgttgc cggtgagg
//
LOCUS       DASYFY010000184         1960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1537528, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000184 DASYFY010000000
VERSION     DASYFY010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537528"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..1159)
                     /locus_tag="VGN19_03440"
     CDS             complement(20..1159)
                     /locus_tag="VGN19_03440"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7194972.1"
                     /translation="MSAPTTIAGQWVASRPTRARNRAVATAEVVLGTLLVSVGVGLGL
                     PWAARTGVSPMAATGLVALVCGVVVWVSGLRALTRRAGRRARWALVPLVLVGSLVLIY
                     VVALPLVVVAPPPSRLGPATPADRGLVYHVVQMPGADGTTLEGWYVPTANGAAVVLRH
                     GSGATRTAVLDQAAVLARHGYGVLMTDARGYGQSTGQRMAWGWYGEEDIQAAVHLLVR
                     TPGVDPDRIGVVGLSMGGEESLGAAAHDARIRAVVAEGLTGRVAADLGWLPATYGWRG
                     EVTLMVHRVQTALVDVLSDAPSPTPLADAVAQTAPRQVLLVTAGEVPDELHAARALAA
                     RSPATVQVWVVPGSGHTQGLRTAPQAWERNVVAFLDAALDSRLPR"
     gene            complement(1245..>1960)
                     /locus_tag="VGN19_03445"
     CDS             complement(1245..>1960)
                     /locus_tag="VGN19_03445"
                     /inference="COORDINATES: protein motif:HMM:NF044751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEV7194973.1"
                     /translation="HRLASAYRSDTVFLAGDAAHVHSPAAAQGMNTGILDAVNLGWKL
                     GFGARNGASEALLSSYEDERRPVARQVIALTRLVFLAEASPSPLAQLARAVAVPLAAP
                     GIPTLVAQRRVMAGVVRLLSQGWVNYRRSPLSVEDHGASGGPRAGDRLPDREVTCAGE
                     VRRLHALTATPGVHLLLGREAVAPRAAVLGPWVSVHRLDDVPGPGAVAVRPDGHIGYR
                     CSHDDDVRLGAWLDLVRAR"
BASE COUNT          300 a          713 c          713 g          234 t
ORIGIN      
        1 gacgggagct gcaccgggct cacctgggca gccggctgtc gagtgccgcg tcgaggaacg
       61 cgaccacgtt gcgctcccac gcctggggtg cggttcgcag cccttgggtg tgccccgatc
      121 cgggcacgac ccagacctga acggtcgcgg gcgaccgcgc ggcaagggcg cgggcggcgt
      181 gcagctcgtc cggaacctcc ccggcagtga cgagcaggac ctggcgtggt gcggtctgcg
      241 cgacggcatc ggcaagcggg gtcggggacg gggcgtcgct gaggacgtcc accagcgcgg
      301 tctggacgcg gtggaccatc agggtgacct cgccccgcca gccgtaggtg gcggggagcc
      361 aaccgaggtc tgccgcgacg cgaccggtca ggccttcggc gacgaccgcc cggatgcgtg
      421 cgtcgtgggc ggcggcgccg agggactcct caccgcccat cgacagcccg accacgccga
      481 tgcggtccgg gtcgaccccg ggggtgcgca ccaggaggtg gacggctgcc tggatgtcct
      541 cctcgccata ccacccccag gccatccgct gccccgtgct ctggccgtag ccgcgggcgt
      601 ccgtcatcag gacgccatag ccgtgacgcg ccagcactgc ggcctggtcg agcacggccg
      661 tcctcgtggc accggagccg tgacgcagca ccactgccgc gccgttggcg gtcggcacat
      721 accagccctc cagcgtcgtc ccatcggcgc ccggcatctg cactacgtgg tacaccagac
      781 cacgatccgc aggggtggcc ggaccgagcc ggctcggtgg gggtgccacc accaccaaag
      841 gcagggccac gacgtagatg aggacgaggg agcccacgag taccagcggc accagggccc
      901 agcgtgcgcg tcgaccggcc cggcgcgtca gggcgcgcag cccgctcacc cagacgacga
      961 ctccgcagac cagggccacc agacctgtgg cggccatggg agagacgccg gtcctcgccg
     1021 cccagggaag tccgagcccg acccccacac tcaccagcag ggtgccgagg acgacctctg
     1081 ccgtcgcgac ggcccggttc cgggctcgcg tcggccggga agcgacccac tgcccggcga
     1141 tggtggttgg cgcactcatc aaccctcctc gtgtcggcag ccttgcgtgc acggcggacg
     1201 accggcaggg tcgaagggcc cgcgcgttgg ccacatcgct tgggtcagcg tgccctgacc
     1261 agatccagcc acgcgcccag ccggacgtcg tcatcatggg agcagcggta gccgatgtgc
     1321 ccgtcaggac gcacggcaac cgcacctggt ccgggaacgt cgtcgagccg atgcacactg
     1381 acccacggac caagaactgc cgctcgcggc gcgactgcct cacggccgag cagcaggtgc
     1441 acgccggggg ttgcggtgag cgcgtgcagg cggcggacct cgccggcaca ggtcacctcc
     1501 cgatcaggca gccggtcacc ggcacgcgga ccacccgacg cgccgtgatc ctcgaccgac
     1561 agggggctgc gccggtagtt gacccacccc tgggacagga ggcggacgac gccggccatc
     1621 actcgtcgct gggccacgag ggtggggata ccaggcgcgg ccagcgggac ggccaccgct
     1681 cgggccagct gggccagggg agacggcgag gcctcggcga ggaagacgag ccgggtcagg
     1741 gcaatcacct gccgtgcgac cggccgtcgc tcgtcctcgt aggacgacag cagggcctca
     1801 ctggccccgt tccgagcgcc gaaccccagt ttccagccga ggttcaccgc gtcgaggatt
     1861 ccggtgttca tgccctgcgc ggcggccgga gagtgcacgt gggctgcgtc cccggcgagg
     1921 aacacggtgt cgctccggta ggcggacgcc aggcggtgtt
//
LOCUS       DASYFY010000185         2127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1590020, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000185 DASYFY010000000
VERSION     DASYFY010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1590020"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VGN19_03450"
     CDS             complement(<1..184)
                     /locus_tag="VGN19_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012038211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0034257 - nicotinamide riboside
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0034258 - nicotinamide riboside transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide transporter"
                     /protein_id="HEV7194974.1"
                     /translation="MNWLEKLFEAQLTIGSQQILWREVVGNAFGFASAIGGMRRRVWA
                     WPVGIVGNALLFTVFFG"
     gene            complement(181..852)
                     /locus_tag="VGN19_03455"
     CDS             complement(181..852)
                     /locus_tag="VGN19_03455"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017792872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEV7194975.1"
                     /translation="MFTGIVEELGQVVALDHGAESARLSVAGPLVTSDAVHGASIAVN
                     GVCLTVVEHDGGQFTVDVMGETLARSSLGDLVAGDPVNLERAMPASGRFGGHVVQGHV
                     DGTATILQRRPGDRWEVVVFSLPAELARYVVEKGSITVDGVSLTVASVGPDSFSVSLI
                     PTTLALTTLGHKGTGERVNLEVDVIAKYVERLLVTPASLTATTPAETTSMPIATSTAP
                     RETYT"
     gene            complement(852..1892)
                     /gene="ribD"
                     /locus_tag="VGN19_03460"
     CDS             complement(852..1892)
                     /gene="ribD"
                     /locus_tag="VGN19_03460"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEV7194976.1"
                     /translation="MTDALLATDAQLMRRALLLADRGPQADANPRVGCVLARPDGTVV
                     AEGWHRGAGTTHAEVDALTQAGDGAAGTTAYVTLEPCNHTGRTQPCAQALYAAGVRRV
                     VFAQTDPNPAAAGGAAWLEEHGVAVEGGVLADEAELLNHTWTHRQLTGRPWVTWKMAT
                     TLDGRSAAADGTSRWISGELARADVHEHRARCGAILVGTGTALVDDPHLTARQPDGSL
                     YPHQPLRVVMGERDLPAGARVLDDAALTWQLRTRDPKEVLAALAGAEIHHVWLEGGPT
                     VAAAFMAAGLVDEVIAYVAPVLLGRGRHTVGDLGLTTIDHALRLRPTDITVLGDDTRI
                     TARVTPPVQEGR"
     regulatory      complement(2000..>2127)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
BASE COUNT          305 a          736 c          749 g          337 t
ORIGIN      
        1 ctccgaagaa gaccgtgaac agcagggcgt tgccgacgat cccgacgggc cacgcccaga
       61 cccgacggcg cattcccccg atcgccgagg cgaaaccgaa ggcgttaccg accacttcgc
      121 gccacaggat ctgctggctt ccgatggtca gctgggcctc gaagagcttc tcgagccagt
      181 tcatgtgtag gtctccctcg gtgcggtgga tgtcgcgatg ggcatgctgg tggtttcggc
      241 gggggtcgtt gcggtcaggg aggcgggcgt cacgagcagg cgctcgacgt acttggcaat
      301 gacgtcgacc tcgaggttga cacgttcgcc ggtccccttg tgccccagcg tggtcagcgc
      361 cagggtcgtg gggatgagcg agacgctgaa cgagtctggg cccacgctgg ccaccgtcag
      421 gctgacaccg tcgaccgtga tggagccctt ctcgaccaca tagcgcgcga gctcggctgg
      481 aaggctgaac acgaccacct cccagcggtc ccccggacgc cgctgaagga tcgtggcggt
      541 tccgtcgaca tgcccctgga cgacgtgccc gccgaaccgg ccggaggcgg gcatggcgcg
      601 ttcgaggttc accgggtcgc ccgccaccag gtcacccagg ctgctgcgcg ccagggtctc
      661 ccccatcacg tcgacggtga actggccgcc gtcatgctcg accacggtca ggcagacgcc
      721 gttgacggcg atcgaggcgc cgtgcaccgc gtcggaggtg accagcgggc cggccacgct
      781 gagccgggcc gactctgcgc cgtgatcgag ggcgaccacc tggcccagct cttcgacgat
      841 tccggtgaac atcaacgacc ttcctggacg ggtggggtga ctcgggcggt gatgcgggtg
      901 tcgtcgccca acaccgtgat gtcggtggga cgcaggcgca gcgcatggtc gatggtcgtc
      961 agccccagat cgccgaccgt atgccgaccg cggcccaaca acaccggcgc cacatacgcg
     1021 atgacctcgt cgaccagccc cgccgccatg aatgcggctg ccaccgtcgg accgccttcg
     1081 agccagacgt ggtggatctc cgcgcccgcc aacgccgcca ggacctcctt ggggtcgcgg
     1141 gtgcgcagct gccaggtcag tgccgcgtca tcgaggactc tggctcccgc cggcaggtcc
     1201 cgttcgccca tgacgacgcg caacggctgg tgcggataga gcgacccatc cggttgccgc
     1261 gcggtcaggt gtgggtcgtc gacgagggcg gtacccgtgc cgaccaggat cgctccgcac
     1321 cgggcgcggt gctcgtggac gtcggcgcgg gccagttcgc cggagatcca gcggctggtg
     1381 ccgtctgcgg cggcgctgcg gccatccagg gtcgtggcca tcttccaggt gacccacggc
     1441 cggccggtga gctgacgatg ggtccaggtg tggttgagca gctcagcctc gtcggccagc
     1501 acgccccctt ccacggcgac gccgtgctcc tccagccacg ctgcgccacc tgcggcggcc
     1561 gggttggggt cggtctgggc gaagacgacc cgtcgcacgc ctgcggcata cagggcctgt
     1621 gcgcagggtt gggtgcgccc ggtgtggttg cacggctcca aggtgacgta tgccgtggtg
     1681 cctgctgcgc cgtcacccgc ctgggtcagg gcgtcgacct cggcgtgcgt ggtgcccgcg
     1741 ccacggtgcc agccctcggc caccacggtc ccgtcgggcc tggcaaggac acagccgacc
     1801 cgggggttgg cgtctgcctg gggtccacgg tcggccagca gcagggcgcg ccgcatcagc
     1861 tgcgcatcgg tggcgaggag tgcgtccgtc atgtccagct ctcgtgctcg aggtcatctt
     1921 cgagctccgg gggacatgtt ggtgggtccg caggcgcccg ttcggcccga aagccaaccg
     1981 agacccagtg gtcccactgt tgcgtgctgc ctaccatccg gactttaacc gtcggtctgg
     2041 gagttccacc cagtcaaccg gccgctggct gcggtcgggt cgcggactgt caccgccggt
     2101 tcggaattac accgaccccg gagcacg
//
LOCUS       DASYFY010000186         1648 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_171694, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000186 DASYFY010000000
VERSION     DASYFY010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171694"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1364)
                     /locus_tag="VGN19_03465"
     CDS             complement(<1..1364)
                     /locus_tag="VGN19_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEV7194977.1"
                     /translation="MTLGAVSVVLVACAAQTSLRETGPVRQLAADHASVDVVGTVTTD
                     PMLVGGRRLGGATVRFTMTVTQVVGRGQSTSVQTPVLVVGDESWQRVRWRETIRAQGK
                     LVPAASGDSVVALLRPTKGPRSVERPGLIARLAEHLRAGLRTAAAPLPADARGLLPAL
                     VIGDTSRTPPDLTEAMLATGMTHLSAVSGSNVAIVVVFALGGCALLGIPRVWRPILAL
                     VVLAGFVVLARPEPSVIRAATMGGIGLVGLSRSRRAAGIPVLSAAVVLLLVVDPWLSR
                     SYGFALSTLATLGLLLFTRTWGDAIGRRLPSRIRSWGPALAIPVAAQAMCGPVVVLLQ
                     GSVSVIGVVANLLAAPAVAPATVCGVAAAVVAPVWPFGATMLCWVGAVPALAIAWVAR
                     TCATIPGGTLPWPDGPPGAVLLAVLTAFVVLTGRWWVHQIRAHPRATLSACLVVVALC
                     APTSA"
BASE COUNT          315 a          605 c          553 g          175 t
ORIGIN      
        1 gctgaggttg gcgcgcagag cgccacaaca actaggcagg cgctgagcgt cgcccgtggg
       61 tgcgcccgga tctggtgaac ccaccaacgc ccggtgagga cgacgaaagc cgtcaggacc
      121 gccagcagca cggcacccgg gggcccgtcc ggccagggca acgtgcctcc cggaatcgtg
      181 gcgcaggtgc gtgccaccca ggcgatcgcc aaggcgggga cggctccgac ccagcacagc
      241 atcgtggccc cgaacggcca gaccggcgca acgactgcgg ccgccacgcc acagacggtg
      301 gcgggggcaa ccgccggcgc agcgagcagg ttggccacga ccccgatgac ggacacggaa
      361 ccctggagca gcaccacgac cgggccgcac atggcctgcg ccgcaacggg aatggccagc
      421 gccggtcccc acgaccggat cctggacggc agccggcggc cgatggcgtc accccaggtt
      481 cgggtgaata gcaggagccc caacgtcgcc aacgtggaga gggcaaagcc gtacgaccgg
      541 ctcagccatg gatcgacgac gagcagcagg acgacggccg ccgagaggac gggaatgccg
      601 gcagcgcgcc gggaccggct gagtccgacc agtccgatcc cacccatcgt cgctgcccgg
      661 atcacactcg gctcgggtct ggcgagaacc acgaagccag ccaggaccac cagggcaagg
      721 atcggacgcc acacgcgggg aatgcccagc aaggcacacc cacccaaggc gaagacgacg
      781 acgatggcga cattggaacc gctcaccgcc gagaggtgcg tcatgcctgt cgcgagcatc
      841 gcctctgtga gatccggcgg cgtacggctc gtatcgccga tcacgagcgc tggcaacagg
      901 ccacgcgcgt cggctggcag aggggcagcg gccgtccgga gtccggcgcg gaggtgctct
      961 gccagccgag cgatcagacc cggccgttcc accgaacgcg gacccttggt cgggcgcaga
     1021 agggcaacga cgctgtcacc agaggccgcg gggacgagct tgccctgagc tcggatggtc
     1081 tcccgccagc gcacccgttg ccacgactcg tcccccacca ccagcactgg cgtctgcacc
     1141 gacgttgact ggccgcgacc gacgacctgc gtgaccgtca tcgtgaaccg caccgtggca
     1201 ccgccgagcc gacgaccacc gacgagcatc gggtcggtag tgaccgtgcc gaccacgtcg
     1261 actgaagcgt ggtcggccgc cagctgacgc acgggtcccg tctcccgaag actcgtctgc
     1321 gccgcacagg cgacgagcac gacgctgacc gccccaagcg tcaaggctgc gagtcccgac
     1381 gctccagtcc gcgttcgagt ccgcactcga gtccgcgccg acgttcgcgt tcgccagacc
     1441 agaacggtgg cgcacccgcc cacgacgacc gcccagaacg tgagtgcccc actcgacaca
     1501 ccaagcacac tcgcgcaggt cgcccacgca acgagggccg ggagcagcag gcggacatcc
     1561 agggcaggag cagtcccgtc cccgtcagcg tccgggcccg gtcggctcac aaggtcacct
     1621 tgggtttcag ctgcgcgaag accttctc
//
LOCUS       DASYFY010000187         2021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1695297, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000187 DASYFY010000000
VERSION     DASYFY010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1695297"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..504)
                     /locus_tag="VGN19_03470"
     CDS             complement(55..504)
                     /locus_tag="VGN19_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019482791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6326 family protein"
                     /protein_id="HEV7194978.1"
                     /translation="MPVQAKLAAAWTSFMFLYIYVDYLHLYKPGAIRDILDGVVFKFD
                     INQAFVVIALTSVAIPILMILLSTTLPARANRATNLVVASLYIPYSAFNLAGGSWIYF
                     YGLGVVLEVLLLAFILRSAWTWPRRTASPATRTTSLNTEPHRTPQQA"
     gene            732..1877
                     /locus_tag="VGN19_03475"
     CDS             732..1877
                     /locus_tag="VGN19_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEV7194979.1"
                     /translation="MATHALSSLWAEPRPKNAPDPGPRDWALVAALIGWSVVEVVLRR
                     DLAPGPVLLLYALAVIGPLPWRRTHPLVAVAVSFGTLMIVDLVRILTGSHGAPLNSTS
                     AALILTYALFRWGSGREAAIGLGVILLWQPITTVADPMSLAGKVGGYAFFLSAAALGA
                     AVRYRAKIRFRDIDQAKAREREQLARELHDTVAHHVSGIAIQAQAGRAIAASHPERAV
                     EALAVIEDAATRTLTELRAIVGVLRASQDTEFAPQPGVAEVEQLATDGQTRPCVEVTL
                     SGEFDDLSPAVGAAIYRLAQESITNARRHARHATQVTVAVTGDADQVRLTIDDDGYAA
                     GGRAPAGYGLVGMRERASLLGGTFHAGPAAERGWRVEAVLPRTGTQR"
     gene            1874..>2021
                     /locus_tag="VGN19_03480"
     CDS             1874..>2021
                     /locus_tag="VGN19_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HEV7194980.1"
                     /translation="MSIRVLIADDQPIVRTGLTMLLDAQPDIEVVGAAADGREAVRLA
                     LQLRP"
BASE COUNT          310 a          700 c          701 g          310 t
ORIGIN      
        1 ggtgaccggg cccgcgggtg gggcgagcgc gaaggatggt cgggcggggg gcagtcaggc
       61 ctgctgcggc gtgcggtgtg gctccgtgtt gaggctggtt gtcctggtcg ccggtgatgc
      121 ggtgcggcgg ggccaggtcc aggcggagcg caggatgaag gccaggagca gcacttcgag
      181 tacgacgccg aggccgtaaa agtagatcca ggacccaccg gccaggttga aggccgagta
      241 ggggatgtag agcgatgcca cgacgaggtt cgttgcgcgg ttcgcacggg cgggcagtgt
      301 cgtggagagc aggatcatga ggatcgggat ggccacggag gtgagcgcga tgacgacaaa
      361 ggcttggttg atgtcgaact taaagacgac gccgtcgagg atgtcgcgga tggccccggg
      421 cttgtacagg tggagatagt cgacgtagat gtagaggaac atgaagctgg tccaggctgc
      481 ggcgagcttg gcctgcacgg gcatgcgctc ttccagcgtg ctctgggacg gcggattctc
      541 tcgtgcggtg tgggattgag gcgttctcat cacattgctc cttgccttga tcgggtgggt
      601 gctttcacct tcacggatgc cggcggcggg cacatcagcc ccggagccag attcgacctg
      661 gccgttggca cagccgagct cttgtacttt cggccgatac gcccaacacg cgggctgcct
      721 aggctgatca gatggccacc cacgcactca gctcgctgtg ggccgaacct cgacccaaga
      781 atgccccgga cccggggccg cgggactggg ccttggtcgc agcactgatc ggctggtccg
      841 tggtggaagt ggtgcttcgc cgggacctgg caccaggccc ggtgctgctg ctctacgcgc
      901 tggcggtcat cggccccctg ccgtggcgac gcacgcaccc cctcgtcgcg gttgcggtct
      961 ccttcggcac gttgatgatc gtcgacctcg tcagaatcct caccgggtcc cacggcgccc
     1021 cgctgaacag cacgtccgcg gcgctcatcc tgacctacgc cctgttccgg tggggctccg
     1081 gtcgggaagc cgcaatcggc ctcggcgtca tcctgctctg gcagcccatc accaccgtcg
     1141 ccgaccccat gagcttggcg ggcaaggtcg gggggtacgc gttcttcctg tccgccgccg
     1201 cgctcggcgc cgcggtccgc tatcgcgcga agatccgctt ccgtgacatc gaccaggcca
     1261 aggcccgcga acgcgaacag ctcgcgcgcg aactccacga caccgtcgcc caccacgtct
     1321 cgggcatcgc catccaggcc caggcaggac gtgccatcgc agcctcccac ccggagcgtg
     1381 ccgtcgaggc cctggccgtc atcgaggacg cagcgacccg caccctcacc gagctgcgcg
     1441 ccatcgtcgg cgtgctccgc gcctcgcagg acaccgagtt cgcgccgcag cccggcgtgg
     1501 ccgaggtcga gcagctcgcc accgatggcc agacgcgtcc ctgcgtcgag gtgacgctct
     1561 ccggcgagtt cgacgacctc agcccggcgg tcggagccgc gatctaccgc ctggcccagg
     1621 agtccatcac caacgctcgt cggcacgccc gccacgcgac ccaggtcacc gtcgcagtca
     1681 caggcgacgc cgaccaggta cggctgacca tcgacgacga cggctacgcc gccggcggcc
     1741 gcgcccccgc gggctacggc ctggtgggca tgcgggaacg cgcctcactg ctcggcggca
     1801 ccttccacgc aggccccgcc gccgagcggg gctggcgggt cgaggccgtc ctgccccgaa
     1861 ccggaacgca acgatgagca tcagggtcct catcgccgac gaccagccca tcgtgcgcac
     1921 cgggctgacg atgctgctcg acgcccaacc cgacattgaa gtcgtcggcg cggccgccga
     1981 cggacgcgag gcagtccgtc tggcgctcca gctgcgcccc g
//
LOCUS       DASYFY010000188         6059 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1275575, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000188 DASYFY010000000
VERSION     DASYFY010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6059
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275575"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..607
                     /locus_tag="VGN19_03485"
     CDS             <1..607
                     /locus_tag="VGN19_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7194981.1"
                     /translation="DVIVIGGGDTGADCIGTAHRQGARSVTSLEIMPQPGEDRPSGQP
                     WPTYPMLFRIASAHEEGGERVYAASTKEVLGEDGKVSGIRLVDVRMGDRGFEEVEGTE
                     RVLPTQLILLAMGFLGPQGSGVVEQLGVDLDERSNVRRDREFMSSVPGVFVAGDAGRG
                     QSLIVWAIAEGRSAAAGVDRFLTGDSALPRPVNPTDRPLVV"
     gene            733..2190
                     /gene="pyk"
                     /locus_tag="VGN19_03490"
     CDS             733..2190
                     /gene="pyk"
                     /locus_tag="VGN19_03490"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEV7194982.1"
                     /translation="MRRAKIVCTLGPAVASPERIRELVVAGMDIARLNLSHGSYADHE
                     AIYRHIRAASDESGHAVGILVDLQGPKIRTARFKDGPVELALGDVFTITTRDVDGDKI
                     EVGTTYKGLPGDVHVGDMLLIDDGKVALEATEVTDTDVRTVVRVPGTVSNNKGINLPG
                     VAVSVPALSEKDKEDLRWALRLRADMIALSFVRSAKDLDDVYEVMDEVGARLPVIAKI
                     EKPQAVDNLQEIIAAFDGVMVARGDLGVELPLEEVPIVQKRAIEMARRQAKPVIVATQ
                     VLESMIENPRPTRAEASDAANAVLDGADALMLSGETSVGAHPIEAVEMMARIIESTEE
                     HGLERIPPLGTRPHTMGGAVSAAAVEIGELLGVKYLITFSQSGDTAKRMSRIRPRIPM
                     LAFTPEQHTRSRLALAWGIETFLVPMARHTDQMARQVDLTLLANGRAKEGDLVVIVAG
                     SPPGIPGSTNALRVHKMGDAINKVAPAYEDLDTGS"
     gene            2263..2345
                     /locus_tag="VGN19_03495"
     tRNA            2263..2345
                     /locus_tag="VGN19_03495"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2296..2298,aa:Leu,seq:caa)
     gene            2394..2624
                     /locus_tag="VGN19_03500"
     CDS             2394..2624
                     /locus_tag="VGN19_03500"
                     /inference="COORDINATES: protein motif:HMM:TIGR03544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEV7194983.1"
                     /translation="MLTSSDAMDRIFTPTSFRRGYDEREVDDFLDQVVEALRYYEQGG
                     RPGPQAPLSPAQPESGGLAQRATRWLRGDPSS"
     gene            2757..3134
                     /locus_tag="VGN19_03505"
     CDS             2757..3134
                     /locus_tag="VGN19_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016996658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEV7194984.1"
                     /translation="MPRFMGFVKMEEGSGAPPQALFDAMDGYIGEQAAKGVFLDGGGL
                     FGTEDAVNFVVRRGETSRVDGPYAEAKEVVGGFAILQYDSLEEAIAGQQDFADLHAKY
                     WPECSMVATLRQISEAPPEAADA"
     gene            3213..4499
                     /locus_tag="VGN19_03510"
     CDS             3213..4499
                     /locus_tag="VGN19_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009084142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7194985.1"
                     /translation="MSAETATAEAITSAWRADSARLVGALTRMTRDVELAEDLAQDAL
                     VAALEQWPSTGVPANPAAWLMTTAKRRGIDHFRRAENLRRKTEELGRARTGGEEEQVP
                     DLEAQVDYIEDDVLRLIFLSCHPCLTPESRAALTLRLVGGLTTSEIARGFLATESTMG
                     QRISRAKKTLSEAGADFELPTGADRDKRLDDVMAVIYLIFNEGYSAAAGEHWMRPDLA
                     NEGMRLARMLAALAPTEPEALGLQALLEIQGSRMDARLDEHGAAVLLEAQDRTRWNQV
                     LIRRGLGALQQAQVLAVSGKPVGKYFLQASIAAQHARARRAEETDWRQIATLYDVLAE
                     AAPGPVVEVNRAVAHGRAFDPGAGLSVLEELDADQLGHSPLVPSVRGDLLERAGRHAD
                     AAKSFAEAAARTRNEAERAVLQRRADENLARVLRSG"
     gene            4583..4768
                     /locus_tag="VGN19_03515"
     CDS             4583..4768
                     /locus_tag="VGN19_03515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194986.1"
                     /translation="MIWWLIGFAVVIAALALVLRRRGSSPGGSDTLRDAGAAGSPEAF
                     RARQEGMGGMNGGAGTP"
     gene            5001..>6059
                     /locus_tag="VGN19_03520"
     CDS             5001..>6059
                     /locus_tag="VGN19_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEV7194987.1"
                     /translation="MRSTNWAGNQTYGSTRLERPASVEALQELVAREAKVRVVGSGHS
                     FNDIADTNGVHVSLEGMPQEVEVDREARSVTVNGGSRYGDVAEALQRQGWALSNLASL
                     PHISVAGAVATGTHGSGDRNGSLAAAVRALNTVEPGGELRQVARGDADFDGRVVALGA
                     LGVVTSLTLDIEPSFEVAQTVYVGLPWEDFLEGFDDLTAAAYSASFFTRWVGDTVDQV
                     WLKVRRGDGDAPERLLGVTPSPTTLHMLPDGEVQSVTPQGGVHGPWLDRLPHFRLEFT
                     PSSGHELQSEYLLPRDHATAAFAELRRLGPQLAPLVQASEVRTVAADSLWLSSSYDRD
                     VVGIHFTWLPDSRAVHAVL"
BASE COUNT          969 a         2011 c         2149 g          930 t
ORIGIN      
        1 ggacgtcatc gtcatcggcg gtggcgacac cggggccgac tgcatcggca ccgcgcaccg
       61 gcagggtgcg cgctcggtga cgagcctgga gatcatgccc cagccgggcg aggaccgtcc
      121 ctccggccag ccgtggccga cctacccgat gctcttccgg atcgcgtcgg cgcacgagga
      181 gggtggcgag cgggtgtatg ccgcctcgac caaggaggtc ctcggcgagg acggcaaggt
      241 cagcgggatc cgtctggtcg acgtgcgaat gggtgaccgc gggttcgagg aggtcgaggg
      301 gaccgagcgc gtcctgccga cccagctcat cctgctcgcg atgggtttcc tggggcctca
      361 gggttccggc gtcgtggagc agctcggggt ggacctcgac gagcggtcga acgtgcgccg
      421 ggaccgggag ttcatgtcct cggtgcccgg ggttttcgtg gccggcgacg ctggtcgcgg
      481 acagtcgctc atcgtgtggg ccatcgccga ggggcgttct gccgcagcag gggtcgaccg
      541 gttcctcacc ggcgactcgg cgctaccgcg accggtcaac ccgacggacc gcccgctcgt
      601 cgtctagcag ttttcagctg cggattggca gctgtgcggc tgctgcgggg ctgctggggg
      661 cccggtgaac ggtgcgtgtc cgcagagtga ccggcgtcac gttcggcggt gtcgaccgat
      721 agggtcgaac gcatgcgccg agccaagatc gtctgcaccc tgggccctgc tgtcgcctcg
      781 cccgaacgga ttcgcgagct ggtcgtagcg gggatggaca tcgcgcgcct gaacctgtcg
      841 cacgggtcct acgccgacca tgaggcgatc tatcgccaca tccgggcggc cagcgacgag
      901 agcggtcacg ccgtcggcat actcgtcgat ctgcagggac ccaagatccg caccgcgagg
      961 ttcaaggacg gcccggtgga gctcgccctg ggtgacgtct tcaccatcac cacgcgcgac
     1021 gtggacgggg acaagatcga ggtcggcacc acctacaagg gcctgccggg agacgtccac
     1081 gtcggcgaca tgctgctgat cgacgacggc aaggtcgccc tcgaggccac cgaggtgacc
     1141 gacaccgacg tccgcaccgt ggtgcgcgtc ccgggcaccg tctccaacaa caagggcatc
     1201 aacctgcccg gggtcgccgt ctcggtcccg gccttgtccg agaaggacaa ggaagacctg
     1261 cgctgggcgc tgcggctgcg ggcggacatg atcgccctgt cgttcgtgcg gtcggccaag
     1321 gacctcgacg acgtctacga ggtcatggac gaggtcggcg cccgtctgcc ggtcatcgcg
     1381 aagatcgaga agccgcaggc ggtcgacaac ctccaggaga tcatcgcggc cttcgacggt
     1441 gtcatggtgg ctcgcggtga cctcggcgtg gagctgccgc tcgaagaggt cccgatcgtg
     1501 cagaagcggg cgatcgagat ggcccgtcgg caggcgaagc cggtgatcgt ggccacgcag
     1561 gttctcgagt cgatgatcga gaacccgcga ccgacccggg cagaagcgtc cgacgccgcg
     1621 aacgccgtcc tcgacggtgc cgatgcgctg atgctctcag gggagaccag cgtcggcgcg
     1681 cacccgatcg aggccgtcga gatgatggcg cggatcatcg agagcaccga ggaacacggg
     1741 ctcgagcgga tccctccgct gggcacccgt ccgcacacca tgggtggtgc ggtgtccgcc
     1801 gcggccgtcg agatcggcga gctgctcggg gtcaagtacc tcatcacctt cagccagtcc
     1861 ggcgacactg ccaagcggat gtcgcggatc cggccacgca ttcccatgct cgccttcacc
     1921 cctgaacagc acacccgctc tcggcttgcc ctggcctggg ggatcgagac gttcctggtg
     1981 cccatggcgc ggcataccga ccagatggcc cgccaggtcg acctgacgct gttggccaac
     2041 ggtcgggcca aggagggcga tctcgtggtg atcgtcgccg gatccccgcc cggaatcccg
     2101 ggatccacga acgccctgcg ggtgcacaag atgggtgacg ccatcaacaa ggtcgcgccg
     2161 gcctacgagg acctcgacac gggctcctga gtggtatgcc gggtgcccgg catacggtga
     2221 cgggccgtta tgctagcccc gcgccgctga gcatcgcggc tcgccgaagt ggtggaatgg
     2281 cagacacgga gcactcaaaa tgctttgccc gcaagggcgt gcgggttcaa gtcccgcctt
     2341 cggcacccag ctgacctgcg acgcaaccgc ccggcgtccg cgatgatggt cggatgctga
     2401 cctcaagcga cgccatggac cgcatcttca cgccgacgtc gttccgtcgc gggtacgacg
     2461 agcgcgaggt cgacgacttc ctggaccaag tggtcgaggc tctgcgctac tacgagcagg
     2521 ggggccgacc cggtccgcag gcgccgctat ccccggccca acccgagtct ggaggactgg
     2581 cccagcgcgc cactcgctgg ctgcgcgggg acccatcgtc ctgatcgtgg tcgtccggca
     2641 acggaagggc gcgattcgaa acaagaaatc tccgtcaggt cgatgtcgaa gagctcgtcc
     2701 gctgttcgac gtacgtgcaa gagagcaact cccctcaacc ggaaggactg agcgacatgc
     2761 cacgcttcat gggtttcgtg aaaatggaag aaggttcggg cgcgccgccg caggcgctgt
     2821 tcgacgccat ggacggctac atcggtgagc aggccgccaa gggcgtcttc ctcgacggtg
     2881 gtggcctgtt tggcactgag gacgcggtca acttcgtggt gcgtcggggc gagacctccc
     2941 gcgtcgacgg tccttacgcg gaggccaagg aggtcgtcgg cgggttcgcc atcctgcagt
     3001 acgactcttt ggaggaggcc atcgcgggcc agcaggactt cgccgacctg cacgcgaagt
     3061 actggcccga gtgctccatg gtcgccaccc tgcgccagat ctccgaagcg ccacccgagg
     3121 cggccgacgc ctgagccatg ccggaccacc ggggttgacg tggccccgga cgccgcccga
     3181 actggcggcg tccgggcccg taggctcaga gcgtgtccgc cgaaaccgcg accgccgagg
     3241 cgatcactag cgcctggcgg gcggattcgg cccgactcgt cggcgccctg acccgaatga
     3301 cgcgtgatgt cgagctcgcc gaggatctag cccaggacgc gctggtggcc gcactagagc
     3361 agtggccatc gacaggcgtg ccggccaatc ccgccgcgtg gctgatgacc acggccaagc
     3421 gccgcggcat cgaccacttc cgccgcgccg agaaccttcg ccgcaagacc gaggagctcg
     3481 gacgtgcccg caccggaggt gaggaggagc aggtgcctga tctcgaggcc caggtcgact
     3541 acatcgagga cgacgttctg cgcctcatct tcctgtcctg ccacccctgc ctgaccccgg
     3601 agtcgagagc agcactcacc ctgcgcttgg tgggcgggct gaccaccagc gagatcgctc
     3661 ggggctttct ggctaccgag tccaccatgg gccagcggat ctcccgagcg aagaagacgc
     3721 tctccgaggc cggcgcggac ttcgagctgc cgactggcgc ggaccgcgac aagcgtcttg
     3781 atgacgtgat ggccgtgatc tacctgattt tcaacgaggg gtactcggcc gccgccgggg
     3841 agcactggat gcggcctgac ctggcgaacg aggggatgcg gctggcccga atgctggctg
     3901 ccctcgcacc caccgagccg gaagcccttg gcctccaggc gctgctggag atccagggct
     3961 cccggatgga cgcgcggctg gacgagcacg gtgcggcggt cctcctggag gcgcaggacc
     4021 ggacacggtg gaaccaggtg ctgatccggc gcgggctggg cgcgctgcag caagcccagg
     4081 tgctcgcggt cagcgggaag ccggtcggga agtacttcct ccaggcgtcg atcgcggcgc
     4141 agcacgcgcg cgcccggcga gccgaggaga ccgactggcg ccagatcgcg acgctgtatg
     4201 acgtcctcgc tgaggcggcg ccggggccgg tagtcgaagt gaaccgcgcg gtcgcgcacg
     4261 gccgggcgtt cgaccccggg gctgggctca gcgtgctcga ggaactggac gccgaccagc
     4321 tcggtcactc accgctcgtc ccaagcgtgc gtggcgacct gctcgagcgg gccgggcggc
     4381 acgccgacgc cgcgaagtcc ttcgccgaag ccgccgcgcg cacgcgcaac gaggccgagc
     4441 gcgcagtgct ccaacggcga gccgacgaaa acctcgcccg ggtgttgcgc tccggctgac
     4501 ctgcccgacc gagacgccga cgtctggtcg tcaaagacgg cgaaagacgt gcccggggac
     4561 cacgtggtgc gaggatgtcc tcatgatctg gtggctcatc ggcttcgcgg tggtgatcgc
     4621 cgccttggcg ctggttctgc gtcgccgtgg ctcctcgccc ggtggaagcg acaccctgcg
     4681 tgatgcaggt gcggcaggtt ctcccgaggc cttccgggcc cgtcaagagg gcatgggtgg
     4741 catgaacggc ggtgcaggca ccccgtaagc cgggtgcctt ctcggattcc gagcggcacg
     4801 agcttgcgac tgacacagtt cagccggccc ttccaacagc ggcagcccgg tgcgtcgggc
     4861 gatctggaaa agggtgagct gggcgtggtc gcgcccgaac gtggacagga ccgccaaggc
     4921 cttgccccct gccgtcagcc ctgcgcgcgc catggcgaga tcctgtcacc ctgaaacctg
     4981 gatgggctca tcatggatga atgcgtagca ccaactgggc cgggaaccag acgtatggct
     5041 ccaccaggct cgagcgtccg gcgtcggtgg aagccctgca ggagctcgtg gcgcgcgagg
     5101 cgaaagtgcg ggtggtcggg tcggggcatt ccttcaacga catcgctgac acgaacggag
     5161 ttcacgtcag tctcgagggg atgccgcagg aggtcgaggt cgaccgtgag gcgcgatccg
     5221 tcacggtcaa tggcggttcg cggtatggag acgtcgctga ggccctgcag cgccagggct
     5281 gggcgttgtc gaacctcgcc tccctgccgc atatctcggt tgcgggggcg gtggctaccg
     5341 gaacccacgg ctctggcgac aggaatggct cgctggcggc ggccgtgagg gccctgaaca
     5401 cggtcgaacc cggcggcgag cttcgtcagg tcgcgcgcgg ggacgccgat ttcgacgggc
     5461 gggtggtcgc gctcggcgcc ctgggggtgg tgacgagcct gaccctggac atcgagccct
     5521 ccttcgaggt ggcacagacc gtctacgtcg ggttgccgtg ggaggacttc ctggaggggt
     5581 tcgacgacct caccgctgcg gcctacagcg cgagcttctt cacgcggtgg gttggcgaca
     5641 cggtcgacca ggtctggctc aaggtccgcc ggggagatgg cgatgcaccg gagcgactct
     5701 tgggcgtaac accttcgccc acgaccctgc acatgctgcc ggacggagag gtccagtcgg
     5761 tgactcccca gggcggtgtg cacggcccgt ggctggaccg acttccgcac ttccgcctgg
     5821 agttcacccc aagcagcggg cacgagctcc agagcgagta cctgcttccc cgggatcacg
     5881 cgaccgcggc cttcgctgag cttcggagac ttggcccaca gctcgcgccc ttggtgcagg
     5941 cgtccgaagt tcgaactgtc gccgccgaca gtctgtggct gagcagcagc tacgaccgcg
     6001 acgtcgtggg gatccatttc acgtggctgc ccgacagccg agcggtgcac gctgtgctg
//
LOCUS       DASYFY010000189         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_749418, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000189 DASYFY010000000
VERSION     DASYFY010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_749418"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /gene="mftD"
                     /locus_tag="VGN19_03525"
     CDS             complement(<1..832)
                     /gene="mftD"
                     /locus_tag="VGN19_03525"
                     /EC_number="1.4.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157875.1"
                     /note="MftD, an enzyme found in the mycofactocin
                     biosynthesis locus, performs an oxidative deamination of
                     3-amino-5-[(p-hydroxyphenyl)methyl]-4,
                     4-dimethyl-2-pyrrolidinone (AHDP). The resulting compound,
                     now called pre-mycofactocin (PMFT), is a biologically
                     active redox cofactor that can oxidize the
                     non-exchangeable NADH of TIGR03971 family SDR-type
                     oxidoreductases; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0140604 - mycofactocin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pre-mycofactocin synthase MftD"
                     /protein_id="HEV7194988.1"
                     /translation="MASSRHWFETVAEAQRRAKKRLPKSVYMALVAGSEQGITVDDNV
                     AAFRELAFRPRVADLPQNRDQATRVLGQDISFPVIISPTGVQAVHPDGEVAVARAAAT
                     AGTAIGLSSFASRSIEDVAAANDKVFFQMYWVGTRERILQRVERARRAGAKALIVTLD
                     WSFATRRDWGSPHIPEKLDLKTKMRFAPEMALRPRYLLDWVRSGKMPDLTCPNLAGPG
                     EDLPTFFGAYGEWMGTPLPTWEDIRWLREEWGGPFAVKGIMHPDDARRAVDVGATAIS
                     V"
     gene            complement(887..>1622)
                     /locus_tag="VGN19_03530"
     CDS             complement(887..>1622)
                     /locus_tag="VGN19_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEV7194989.1"
                     /translation="ADEALEAVLLETLAEFQVSVPEVGTFTTDTPPYVILTSNNTCDL
                     SAALKRRCLHLFLDYPSAERELEIIRSKDTGLPEALAKQLVDIVRGLRELELRKAPSI
                     SETIDWARTLAVLSVQELNATILADTASVVVKYDKDVRKAIRAMPRLVDPNATVPETG
                     HGHGHGHEGNGHEGHGDHTRADTHDVDDGPQVRAAKDRVGRHGEGYGNPVRSTQPGGD
                     DPPPKPRGVTPSQGSRSFGLGRKRAL"
BASE COUNT          216 a          550 c          575 g          281 t
ORIGIN      
        1 acacggagat cgccgtggcg ccgacgtcga cggctcgtcg ggcgtcgtcg ggatgcatga
       61 tccccttgac cgcgaacggc ccgccccatt cctcgcgcaa ccatctgatg tcctcccagg
      121 tgggcagggg ggtgcccatc cactccccgt aggcgccgaa gaacgtcgga aggtcctcgc
      181 cggggcccgc gaggttgggg caggtgaggt cgggcatctt cccgctcctg acccagtcga
      241 gcaggtacct gggccgtagg gccatctccg gggcgaaacg catcttcgtc ttgaggtcga
      301 gcttctccgg gatgtgcggg ctgccccagt cgcgccgggt ggcgaacgac cagtcgaggg
      361 tgacgatgag ggccttggcc ccggcgcgcc tggcgcgttc cacccgctgc aggatccgct
      421 cgcgggtccc gacccagtac atctggaaga acaccttgtc gttggccgct gcgacgtcct
      481 cgatcgaccg gctggcgaag gagctcagcc cgatggccgt cccggcggtg gccgcggcgc
      541 gcgcgacggc cacctcaccg tccgggtgga cggcctgcac gccggtcggc gagatgatca
      601 ccgggaagga gatgtcctgg cccagcaccc tggtggcctg atcgcggttc tgcggcaggt
      661 ccgcgacgcg cgggcggaag gccagctcgc ggaaggcagc cacgttgtcg tccacggtga
      721 tgccctgttc cgagcccgca accagcgcca tgtacacgga cttgggcagg cgtttcttcg
      781 cccgccgctg tgcctccgcg acggtctcga accaatgcct actgctcgcc atatcgtttc
      841 ctttccagct cggacaaacc tggtcgttcg acgtggggag cgagggtcag agcgcgcgct
      901 tgcggcccag cccgaaagag cggctgcctt ggctcggggt gacgccgcgc ggcttcggcg
      961 gggggtcgtc cccgccaggc tgggtcgacc gcaccgggtt gccatagccc tcgccgtgcc
     1021 tgcccaccct gtccttcgcc gcccgcactt gaggaccgtc gtcgacgtcg tgcgtgtcag
     1081 cgcgggtgtg gtcgccgtgc ccctcgtggc cattcccctc gtggccgtgg ccgtggccgt
     1141 ggccggtttc gggtaccgtg gcgttggggt cgacgagtcg gggcattgcc ctgatggctt
     1201 tccggacgtc cttgtcgtac ttcacgacga cggacgcggt gtccgcgagg atggtggcgt
     1261 tgagctcttg gacgctgagc acggccagcg tgcgggccca gtcgatcgtc tcggagatcg
     1321 agggcgcctt gcgcaactcc agctcccgca gcccacgcac gatgtccacc agctgcttgg
     1381 ccagcgcctc gggcaggccg gtgtccttcg agcggatgat ctccagctcg cgttccgctg
     1441 aggggtagtc caggaacagg tgcaggcagc gccgcttgag cgcggcggag aggtcacagg
     1501 tgttgttgct ggtcaggatc acgtacgggg gagtgtcggt ggtgaaggtg ccgacctccg
     1561 gcacggacac ctggaactcc gccagggtct ccagcagcac ggcttccagc gcctcgtcgg
     1621 cc
//
LOCUS       DASYFY010000190         2488 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_855245, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000190 DASYFY010000000
VERSION     DASYFY010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855245"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VGN19_03535"
     CDS             complement(<1..416)
                     /locus_tag="VGN19_03535"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7194990.1"
                     /translation="MSSSPAAVAHEATTDALWERAAVIAGQLNRAHGALVEVAAGLLD
                     GGHWGDGGFRSPEHWLVVRAGLSPARASDVVRIARRRDELPDTAQALAAGDLSVDQAA
                     VLARHARADHQSGMARFARSATVPQLRQALSKSVFV"
     gene            501..1889
                     /locus_tag="VGN19_03540"
     CDS             501..1889
                     /locus_tag="VGN19_03540"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HEV7194991.1"
                     /translation="MPPAPDAAQREAARNLEVLKRMREAEEAIVARAPEHDLQPSLDR
                     IQAVMDLLGDPQRTFPVIHLTGTNGKTSTTRIIDSLLCELGLRTGRFTSPHLHSLRER
                     IALSGEPISAEKFLDAYDDVMPFVELVDARSLADGGPRMTYFEVLVAIAYAAFADAPV
                     DVAVVEVGLGGSWDATNVADGSVAVVTPIALDHQHFLGHDVESIATEKSGIIKADALA
                     VVAVQEPEVAQILRDRATDVGARIAFEDSDFGLLTREVAVGGQQIGIRGLAGEYEELL
                     LPLHGLHQAHNTVLAIAAVEAFLGGAEQRLDPQIVRSALAAVTSPGRLEIVRRSPTVI
                     VDAAHNPAGALALRAALEDSFAFARVVGVVAILKDKDATEMLEILEPVLDHVVVSRTT
                     SARAMRPDELGALALEIFGEDRVTVVQDLPDALDVAAGLADEGGLGGGVLATGSVTTA
                     AEVRMLLGVSEV"
     gene            complement(1929..2060)
                     /locus_tag="VGN19_03545"
     CDS             complement(1929..2060)
                     /locus_tag="VGN19_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011693993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7194992.1"
                     /translation="MTDKSPRQHLSKKAGKTIKEKRADKAAKTDSKAHLDIGQMGKR"
     gene            2229..>2488
                     /locus_tag="VGN19_03550"
     CDS             2229..>2488
                     /locus_tag="VGN19_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4233 domain-containing protein"
                     /protein_id="HEV7194993.1"
                     /translation="MKGVVFYGSLGKFTWRMLATVLAGQGTVVFLGALVARGLADANG
                     DGRGGTWLWVGIGLAVLCFVAAGLMRRPWGVSLGWLIQLATFA"
BASE COUNT          341 a          826 c          897 g          424 t
ORIGIN      
        1 tcgacgaaga ccgacttcga caaggcctgc cggagctgag gaaccgtggc gctgcgcgcg
       61 aaacgcgcca tgcctgactg gtggtctgcc ctggcgtgac gcgccagcac ggcggcctga
      121 tccaccgaca ggtcaccggc ggccagtgcc tgcgcggtgt cgggcagctc gtcgcgccgc
      181 cgagcgatgc gcacgacgtc gctagctcgg gcgggggaga gtccggcgcg caccacgagc
      241 cagtgctccg gggaccggaa cccgccgtca ccccagtggc caccatcgag gagcccggca
      301 gcaacctcga ccagtgcgcc gtgcgcacgg ttcagctggc ccgcgatgac ggctgcgcgc
      361 tcccacaggg cgtccgtcgt cgcctcgtgg gcgaccgctg ccggactgga ggacatgact
      421 caatcgtaca tatgttcgaa gaggttggcc ctggcttgtc cacatgtggg gcgcgcggac
      481 cgctagtgga tgattgaccc atgcccccag ccccggatgc cgcccagcgc gaggccgcgc
      541 gaaacctcga ggttctcaag cggatgcgcg aggccgaaga ggccatcgtg gcgcgagcgc
      601 ccgagcacga cctgcaaccc agcctggacc ggatccaggc ggtgatggac ctgctcggag
      661 acccgcagcg caccttcccg gtgatccacc tcaccggaac caacggcaag acctcgacca
      721 cgcggatcat cgactcgctg ctatgcgagc tgggactgcg gacggggcgg ttcacctccc
      781 cgcatctgca cagcctgcgc gagcggatcg cgctgtcggg tgagccgatc agcgctgaga
      841 agttcctgga cgcctacgac gacgtgatgc cgttcgtcga gctggtggat gctcgttcgc
      901 tggcggacgg cggcccgcga atgacctact tcgaggtgct ggtcgccatc gcgtatgccg
      961 ccttcgccga tgctccggtc gacgtcgccg tggtcgaggt gggcctgggt ggcagctggg
     1021 acgcgacgaa cgtcgccgac gggtcggtcg ccgtggtcac gccgatagcc ctggaccacc
     1081 agcacttcct gggtcatgac gtcgagtcca tcgcgaccga gaagtcgggc atcatcaagg
     1141 ccgacgccct cgccgtcgtc gcggtccagg agcccgaggt cgcccagatc ctgcgggacc
     1201 gggccaccga cgtcggcgct cgaatcgcct tcgaggacag cgacttcggt ctgctcacgc
     1261 gcgaggttgc ggtgggtggt cagcagatcg gcatccgcgg cctggcgggc gagtacgagg
     1321 agctgttgct tccgttgcac ggcctgcacc aggctcacaa cacggtgctg gccatcgcgg
     1381 ccgtcgaggc gttcctgggc ggagcggagc agcgactgga cccccagatc gtgcgctctg
     1441 cgctggcggc ggtcacctcg cctggtcgcc ttgagatcgt ccggcgctcg ccgaccgtca
     1501 tcgtcgacgc ggcgcacaac ccggccggcg cactggcgct gcgagctgcc ctggaggact
     1561 cgttcgcctt tgcccgcgtc gtgggggtgg tggccatcct caaggacaag gacgccacgg
     1621 agatgctcga gatcctcgag cccgtgctcg accacgtggt cgtctcgagg acgacgtccg
     1681 cgcgcgcgat gcgtcccgac gagctggggg cgctcgccct ggagatcttc ggcgaggacc
     1741 gcgtgaccgt ggtccaagac ctgcccgatg ccctggatgt ggcagcgggc ctcgccgacg
     1801 agggtggcct gggcgggggc gtccttgcca ccgggtcggt caccaccgcc gccgaggtcc
     1861 ggatgctgct tggcgtcagc gaggtctagc ggggcgcggt cgaactagag gtgtctagcc
     1921 ggggtgacct agcgcttgcc catctggccg atgtcgaggt gagccttcga gtcggtcttc
     1981 gcggccttgt cggcacgctt ttccttgatg gtcttgccgg ctttcttgga caggtgttgc
     2041 cggggtgatt tgtccgtcat ggctggttcc cttggtcgga agcctggatg gctccgtccc
     2101 cgacggtact ccaggtggag cacggcatac gctcgctcca tgcccggcaa gctgatcgtg
     2161 ttcatcgtcg tcgtggcggt cgccttctgg ctgctcacga ggctccgcga ctcggggcgt
     2221 ggcgggcggt gaagggcgtg gttttctacg gctcgctggg aaagttcacc tggcggatgc
     2281 tggccacggt gctcgccggg caggggaccg tcgtcttcct cggtgccctc gtggcccggg
     2341 ggctggccga tgcgaacggc gacgggcgtg gcgggacgtg gctctgggtc gggatcggtc
     2401 tcgccgtgct gtgcttcgtg gcagccgggc tgatgcgcag gccttggggg gtgtcgctcg
     2461 gctggctgat ccagctggcc accttcgc
//
LOCUS       DASYFY010000191         1602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_172169, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000191 DASYFY010000000
VERSION     DASYFY010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172169"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..814
                     /locus_tag="VGN19_03555"
     CDS             <1..814
                     /locus_tag="VGN19_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013115675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEV7194994.1"
                     /translation="VGSAFSGSLALLADAGHMATDAVGIGLALAAVTLAQRPARGRRT
                     FGWQRAEILAAVANGLLLVAVAGYVLVAAVQRIGHPPTIGSGLMLVVASVGLVVNLVS
                     LAVLHAGRESSLNVRGAYLEVLGDALGSVAVIVAAVVIAATGWVTADVVASVAIGFLV
                     LPRAWHLLREALDVLLEAAPRGVDLEDVRAHMVGVAGVLGVHDLHAWTITSGLPVLSA
                     HVVVTEEALSGGHGGRVLDALCACLGTHFDVEHCTLQLESETHSAHEFPVHD"
     gene            901..>1602
                     /locus_tag="VGN19_03560"
     CDS             901..>1602
                     /locus_tag="VGN19_03560"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEV7194995.1"
                     /translation="MDHAMHSGMWVPAPPPTWGRMFLVHLDSWSVLAVLSGVALLVYL
                     AAVVRLARTGVRWPWWRTVSWFAGTASLFLVTGTWVNGYSMALFSVHMTQHMVLSFVT
                     PLFLLIGAPVTLALRTLPRGQGAAGAPRALLLEALHSRFARAVTHPLFTVPLFIASLY
                     GVYFTPLFDTLMRSPGGHQLMLAHFVVTGYLFFGPIVGHDPWPRTVGYPARMLELFLP
                     VPFHAFFGVAIMMSDA"
BASE COUNT          169 a          590 c          562 g          281 t
ORIGIN      
        1 cgtcggctcg gccttctccg ggtcgttggc cctgctcgcc gacgccggcc acatggccac
       61 cgacgccgtg ggcatcgggc tcgccctcgc cgcggtcacg ctggcccagc gccccgcccg
      121 gggacggcgc accttcggct ggcagcgggc ggagatactg gccgcggtcg ccaacggcct
      181 gctgctggtc gccgtcgcgg gctacgtgct ggtcgccgcc gtccagcgga tcggccatcc
      241 acccaccatc ggctcgggcc tgatgctggt cgttgcctcg gtgggtctgg tcgtcaacct
      301 ggtgtccctg gccgtcctgc acgccggccg ggagagctcc ctcaacgtcc ggggcgccta
      361 cctcgaggtg ctcggcgacg cactggggtc ggtcgccgtg atcgtggccg ccgtcgtcat
      421 cgccgccacc ggctgggtca cggcggacgt cgtcgcatcg gtcgcgatcg gcttcctcgt
      481 cctgccccgc gcctggcacc tgctccggga ggccctcgac gtgctgctcg aggcggctcc
      541 ccggggtgtc gacctcgagg acgtacgggc ccacatggtc ggtgtggccg gcgtgctcgg
      601 cgtgcacgac ctgcatgcgt ggaccatcac ctcggggctg ccggtgctct ccgcccacgt
      661 cgtcgtcacc gaggaggcgt tgagcggcgg gcacggcggc cgggtgctcg acgcgctgtg
      721 cgcctgcctg ggcacccatt tcgacgtcga gcactgcacg ttgcagctgg agagcgagac
      781 ccacagcgcc cacgagttcc cggtccacga ctgaaagaag gaccctcctg ccccccaccg
      841 ctcgcaggct cgcggtggga ccctgcagga ggggctgccg acggtgggac agtggtgggc
      901 gtggaccacg caatgcactc gggcatgtgg gtgcccgcac cgcctcccac gtgggggcgc
      961 atgttcctcg tccacctcga cagctggtcg gtgctggcgg tcctgagcgg ggtggccctg
     1021 ctggtgtacc tggccgcggt cgtccggctg gcacggaccg gggtgcgctg gccctggtgg
     1081 cgcacggtgt cgtggttcgc gggaaccgcc tcgctgttcc tggtcaccgg cacgtgggtg
     1141 aacggctaca gcatggcgct gttcagcgtg cacatgacgc agcacatggt gctgtcgttc
     1201 gtcacgcccc tgttcctgct gatcggcgcc cccgtgacgc tggcgctgcg caccctgccc
     1261 cggggacagg gcgccgcggg agccccgcgc gcccttctgc tggaggcgct gcacagccgc
     1321 ttcgcgcggg ccgtcacgca tccgctgttc acggtgccgc tgttcatcgc gagcctttac
     1381 ggcgtctact tcacgccgct gttcgacacg ctgatgcgca gccccggcgg ccaccagctg
     1441 atgctcgccc acttcgtggt gacgggttac ctcttcttcg gcccgatcgt gggccacgat
     1501 ccgtggccgc gcacggtcgg ctacccggcc cgcatgctcg agctgttcct gccggtgccc
     1561 ttccacgcct tcttcggcgt ggcgatcatg atgtccgacg cg
//
LOCUS       DASYFY010000192         4443 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_14305, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000192 DASYFY010000000
VERSION     DASYFY010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14305"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VGN19_03565"
     CDS             complement(<1..457)
                     /locus_tag="VGN19_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018774378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7194996.1"
                     /translation="MTDQTQTTKTSPGGDQATQPSQKQVWLVTGAGRGLGVDIAKAAL
                     AAGHAVVATARNIESIQRALGQHDQLLAVALDVTDPDAAQAAVAATIELFGHLHVLVN
                     NAGSFQAGFFEEMSPEAFRSQIETTLFGPVNVTRAALPQLRAQRSGLVMT"
     gene            864..1808
                     /locus_tag="VGN19_03570"
     CDS             864..1808
                     /locus_tag="VGN19_03570"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7194997.1"
                     /translation="MAYTVASRPVPDGEAWARSALAQLVRVPGVRRAGLALAEGAGRR
                     LLFTASDRDNMRNLEWCEIDAYEHVPLNHTVRTGEAVVGSLDDLARRYSAFTDRQTRK
                     THALASFPIFAAGQVHGGYALFFDTPQRFDQPQLTELEELGARLGADLRRVQRATTHA
                     SRSLEAEPVPHGAHAATYSVAPDLAAVAQARHFVLKTLVGWGVEDETVDNAILCLSEL
                     VTNAIIHTDAGCELRVVLDRGVLTSTVRDGGSTVVVDPRNVTADPLAVHGRGLQLVDA
                     FSTRWGSELDAVGMTVWFVLEPTRSPVARSIPQRPFLH"
     gene            complement(2041..2703)
                     /locus_tag="VGN19_03575"
     CDS             complement(2041..2703)
                     /locus_tag="VGN19_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7194998.1"
                     /translation="MTSAPLRVIIADDQRVVREGLAMLIGLLDGIEVVSTAADGLEAV
                     EQALRQRPDVVIMDLRMPNMDGAQATARIRAQLPQTHVLVLTTYADDDALFPALQAGA
                     RGYLTKNASAEEIERALSALGHGQTHLAPEVQQRLVTATLAGRAAAPASEPAHQGLST
                     REVEVLTLIAAGHSNTEIARELVLSNSTIKSHINHIFAKIGARDRAQAVHYAYHHGLT
                     RS"
     gene            complement(2700..3929)
                     /locus_tag="VGN19_03580"
     CDS             complement(2700..3929)
                     /locus_tag="VGN19_03580"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEV7194999.1"
                     /translation="MTSHAQFPGGRAAQARAAERQRLRHQRDLLRPLGWAVIAVVAGV
                     AMTTAPTPGLRGAQGGVTLALAAYAASTAFTIGDRFVNRPVAVQVAVIVVMGAAGLGL
                     VALQPRGATGLAVGAAVWMAVTRLPSALSVGVGVVITVGQVVLALSGGTAGATVLAAT
                     LFNALLGLVAYVVRTARAAQDRTELLLAELADARDEQTRAAALAERSRIAAELHDVLA
                     HCLSGAAIQLQGARVLASREQAGAGVQEAVQRASELINEGLTNARVAVGALRGEPLPG
                     MADLEALVTGFRRDLLVPASLSIQGKPRPLPAATGLLLYRGAQEALTNAARYAPGAPT
                     TVVLTYTTGRARLSVQNPAADPGSAVDGGPPSPGPRGVGGGHGLTGLRERVEQAGGTF
                     QAGPQPEGWRVDVEVPA"
     gene            complement(4054..>4443)
                     /locus_tag="VGN19_03585"
     CDS             complement(4054..>4443)
                     /locus_tag="VGN19_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195000.1"
                     /translation="SIPTAGPDLVLALTLTLVGLALGVLCGYATHVRVDPDGTRFARV
                     GPVAAGLLLAGISARLMFVFALDHGAGPAIREFSIVHHITQAAWPLALVSMALCEVTA
                     RLVIVHVRGLRLAPQAPLGVVMSGSRA"
BASE COUNT          671 a         1460 c         1614 g          698 t
ORIGIN      
        1 tcgtcatcac cagccctgag cgctgggccc gcagctgggg gagggccgcc ctcgtcacgt
       61 tgacggggcc gaagagggtg gtctcgatct gggaccggaa cgcctcgggg ctcatctcct
      121 cgaagaaccc ggcctgaaaa ctgccggcgt tgttcaccag gacgtgcagg tgaccgaaca
      181 gctcgatggt cgccgcgacg gccgcctgtg cagcatcggg gtcggtgacg tcgagggcga
      241 cggccaacag ctggtcatgc tgaccgaggg cacgctggat gctttcgatg ttgcgggcgg
      301 tggcgaccac cgcgtgcccc gcggccaggg cggccttggc gatgtcgacg cccaggccgc
      361 gacccgctcc ggtcaccaac cagacctgct tctggcttgg ctgggtggcc tggtcgccgc
      421 ccgggctggt cttggtggtc tgggtctggt cggtcattgc tgctgcttgt gtgagaggga
      481 tcgtcggtcg gcggccccgg acggggcgcc gtcaaccaga gaaccagcgc cggagcagtt
      541 gcggcagtcc ctcttgtagg agccactgac agggaccccc accgggacgt cagccttcgt
      601 acagtggacg acatgaccgc accgcagccc gtcgtgtcgg gtcaggtgcg ctgcaggttg
      661 gcccaggcat cgagtcggtc catgtcctca ggagtgagtc cgacctcggt tcgcggcgtc
      721 aagagcagcg gccaggccgc gttcaggcac gcggctcaaa gacgcggaac gacaaatgcg
      781 atcagtccag gcgagggcgc gatcaggagg ccggccacca tgcgctgcgg caatcgcggt
      841 tcgagcgagg atatcctgac gcggtggcgt acacggtcgc cagcagaccg gtccctgacg
      901 gggaggcgtg ggcgcggtcc gcgctcgcgc agctggtccg cgtgccgggc gttcgtcggg
      961 cggggctggc actggcggaa ggcgctggac gacggctgct ctttacggcc agtgaccgcg
     1021 acaacatgcg caacctcgaa tggtgtgaga tcgacgctta cgagcacgtc ccgctgaacc
     1081 acaccgtgcg caccggcgag gcggtcgtcg gctcgctgga cgacctcgcc cgccgctata
     1141 gcgcgttcac ggaccgccag acgcggaaga cgcacgcgct cgcgtccttc ccgatcttcg
     1201 cggctggtca agtccatggc ggatacgcgc tcttcttcga cacaccgcag cgctttgacc
     1261 agccacagct gaccgagctc gaggaactcg gggcacggct gggcgctgac ctgcgtcgcg
     1321 tccagcgcgc caccacccat gccagcagat ccctggaggc cgagccggta ccgcacggcg
     1381 cacacgcggc cacgtactcc gtagccccgg accttgcggc ggtcgcacag gcacgccact
     1441 tcgtgctgaa gaccctcgtg ggatggggcg tcgaggacga gaccgtcgat aacgcgatcc
     1501 tgtgtctgag cgagctggtc accaacgcga taatccacac cgatgccggc tgcgagcttc
     1561 gcgtcgtgct cgaccgcggc gtactcacct cgaccgttcg tgacggcggc tcgaccgtcg
     1621 tcgtggatcc caggaacgtc acggcggatc cgctggccgt gcacggtcgt gggctccagc
     1681 tcgtggacgc gttctccact cggtggggct cggagctgga cgccgtggga atgaccgtgt
     1741 ggttcgtgct cgagccgacg cggtcacccg tggctcgatc aatcccgcaa cggcccttcc
     1801 tgcactgagt cgatgctccg cgccctgtct gcggcgccgc gggcgccttt tagaggtgta
     1861 gtgagcatca tgccgtgacg ttctcgtcgt ggacagcgcg gaaaggaact ttgcctttgg
     1921 acctcacggc gcagtcgagg tggtgtcgcg acagcatgag agctcgtcct gcgtgctgaa
     1981 ttgcttgact ggcgaacata gccggcgttc agcttggggt gcctgtatct ccgtgggtgc
     2041 tcaggatctg gtcaggccgt ggtggtaggc gtagtggacg gcttgggcgc gatcgcgggc
     2101 gccgatcttg gcgaagatgt ggttgatgtg gctctttatg gtggagttgc tgaggacgag
     2161 ctctcgggcg atctcggtgt tcgagtggcc cgcggcgatc agcgtgagca cctctacctc
     2221 gcgggtggac agcccctggt gggctggttc tgaggcaggg gctgctgctc gccctgcgag
     2281 ggtggcggtc acgagacgtt gctggacttc gggggcaagg tgggtctgcc cgtggcccag
     2341 ggccgagagg gcgcgctcga tctcttcagc gctggcgttc ttggtgaggt agccgcgcgc
     2401 gcccgcctgg agtgcgggaa agagagcgtc gtcgtcggca tacgtggtga ggacgagtac
     2461 gtgggtttgc ggtaactggg cacggatacg ggccgtagcc tgcgccccgt ccatattcgg
     2521 catgcgtagg tccatgatga cgacgtcggg gcgctgccgc agggcttgct ctacggcttc
     2581 gagcccgtcg gcggcggtgg agaccacttc gatcccgtcg agcaggccta tcagcatggc
     2641 caatccctcg cgaaccacgc gctggtcgtc cgcgatgatg acgcgcagcg gggccgaggt
     2701 cacgctggca cctccacgtc gacacgccag ccttccggct gtggtccagc ctgaaaggtg
     2761 cctccggcct gctcgacgcg ctcgcggagg ccggtcagtc catggccgcc gccgacgccc
     2821 cgcggaccgg gcgacggcgg ccccccgtcg acggctgagc ctgggtccgc ggccgggttc
     2881 tgcaccgaca ggcgcgcacg gcctgtcgtg taggtgagca ctacggttgt gggggcgccg
     2941 ggcgcgtatc tggccgcgtt ggtcagggcc tcctgcgccc cccgatagag cagcaggccg
     3001 gtcgcggcgg gcagtgggcg cggctttccc tgaatgctca gggacgccgg caccagcagg
     3061 tcgcgtcgga atcccgtcac gagcgcctcc aggtcggcca ttccgggcaa tggctctccg
     3121 cgcagcgccc cgacggcgac gcgcgcgttg gtcaggccct cgttgatcag ctcgctggcc
     3181 ctctggacag cctcctgcac cccagcccct gcctgttcac gcgaggcgag aacgcgcgca
     3241 ccctgcagct ggatcgctgc gccggacagg cagtgcgcga gaacgtcgtg gagctcagcg
     3301 gcgatccggc tgcgttcggc cagcgcggcg gcgcgggtct gctcgtcacg agcatcggcg
     3361 agctcggcga gcagcagctc ggtacggtcc tgggcggcgc gcgcggtccg caccacgtag
     3421 gcaacgagtc cgagcaaggc gttgaacagg gtggcggcca ggacggtcgc gcccgccgtg
     3481 cccccgctga gcgccaacac gacttgtccc acagtgatga ccacgccgac accgacgctc
     3541 agggccgacg gtaggcgggt cacggccatc cagaccgcag cgccgacagc caggccggtc
     3601 gctccgcgcg gctggagcgc gaccaggccg agccccgccg cacccatgac cacgatgaca
     3661 gcgacctgca ccgcgacggg ccggttgacg aaccggtctc cgatggtgaa agcggtcgac
     3721 gcggcatacg cggccagagc caaggtcacg ccgccctgtg cgccgcgcag ccctggcgtc
     3781 ggcgcggttg tcatggcaac tccggctacc actgcgatga cggcccatcc cagcggcctg
     3841 agcaggtcac gctggtggcg caggcgttgg cgttccgctg cacgggcctg agcggccctg
     3901 ccgccgggaa actgtgcgtg cgatgtcatg ctcgtcacct cgcaggcgcg gattgggtgg
     3961 ttctcgcccc gcccgagatt ccatggtccc tcctcagggc agggtaaggc gagcacgagg
     4021 gagggaccgt gagcgtcgcg gtggatgtgc gggtcaagcg cgcgagccgg acatgacgac
     4081 cccgagaggg gcctgagggg ccagccggag tccgcggacg tggacgatga ccaagcgagc
     4141 ggtcacctca cacagcgcca tcgagaccag ggcgagtggc caggccgcct gagtgatgtg
     4201 gtggacgatg ctgaactcgc ggattgcggg tccggcaccg tgatcgagcg cgaacacgaa
     4261 catcaaccgg gcgctgatgc cggccaggag cagccctgcg gcgaccgggc cgacgcgggc
     4321 gaaccgcgtg ccgtcggggt cgacccggac gtgtgtggca tagccgcaca ggacgcccaa
     4381 agccaggccg accagagtca gggtgagggc caagacgagg tcggggccag ccgtggggat
     4441 gct
//
LOCUS       DASYFY010000193         7669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_907589, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000193 DASYFY010000000
VERSION     DASYFY010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7669
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907589"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..368)
                     /locus_tag="VGN19_03590"
     CDS             complement(<1..368)
                     /locus_tag="VGN19_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEV7195001.1"
                     /translation="MTSARTPLPVGALAPEFTLKDQNGQDFSLTDFRGRKNVVLVFYP
                     FAFSGICTGELCEIRDNLGAFVRDDVQVLAISCDHMFSQRAWADKEGYFFPLLSDFWP
                     HGGVAQSFGVLDERAGAAVRG"
     gene            complement(390..827)
                     /locus_tag="VGN19_03595"
     CDS             complement(390..827)
                     /locus_tag="VGN19_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018769523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3052 domain-containing protein"
                     /protein_id="HEV7195002.1"
                     /translation="MEKAVSTSAQAAPRSAAARLGFATGQVIQEFGYDVDVDDDLRFA
                     IEDLTTTDLEDEDYGDVADAVLIWWRADDGDLVDAVVDGLTNLAEGGFIVVLTPKATR
                     AGHVEPSDIEEAATTAGLHTSGAVNAGEHWTATRLVAPKTGRR"
     gene            complement(955..2391)
                     /locus_tag="VGN19_03600"
     CDS             complement(955..2391)
                     /locus_tag="VGN19_03600"
                     /inference="COORDINATES: protein motif:HMM:NF015648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEV7195003.1"
                     /translation="MTESPARDSSAGDSVTTGWQHLHPLSPFLRGGVAFVGAVGYVFS
                     QQVNRIFGSAGDDPTQGHPLYAAVGAVLLLGVILGGAWVSWRVSKFRIGTAFLELRHG
                     LLFRQHRQVPFDRIQAVDISRPVLARLTGLSEVVVQSAGGRDSHIKLAFLPDSRAQEV
                     RELLLALAERPDETGTLRRPTAIDDAAETVGEAADPVAETAHIALRVPNARLIQATLY
                     SGGAVFLAVAIPTLLVGFATGNAGAVGWLGPMVLGVGGRHVRHVVRDANFTVRQQGDR
                     LMVRRGLVDLRSTSVPLHRIQAVGLVQPMFWRPLGWWRLHVNVAGAGSRADEDTETQL
                     LPVGTMAEALGMLALIRPRPTDWLADSLGVAALTGQGHQEGFTTASRRARVLDPWSWR
                     RKGYAVTPDCVLVRRGALRREAQVVPHARIQALGLRQGPLQRWRGVATVTIASTRGPV
                     RVTLAHLGLLDAESFLHDQTGRSSRARA"
     gene            complement(2388..2909)
                     /locus_tag="VGN19_03605"
     CDS             complement(2388..2909)
                     /locus_tag="VGN19_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013769737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEV7195004.1"
                     /translation="MSDTPQAPLRERPEVRLFDDSGMPWRPVSAKLVPARLTLLAAGL
                     VVPLGVAVVLAFQVADGWWWAVVAVALVGVGGTWVVLRQVSAISWVELEEELVVRRGR
                     IFRSLVSVPYGRLQYVDVHSGPLDRLLGIAEVTLHTASPQLSAGIPGLPVAEAEALRQ
                     RLAARGESQRAGL"
     gene            2987..3835
                     /gene="fdhD"
                     /locus_tag="VGN19_03610"
     CDS             2987..3835
                     /gene="fdhD"
                     /locus_tag="VGN19_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEV7195005.1"
                     /translation="MGRVTSRTPSIRVLVEADGVAHAAGRPDTLAVEEPLEIRVDGTA
                     VTVTMRTPGDDFDLTVGNLLTEGVLRSADQVSRLMHCLDEDESGSPTYNVVDVTLAPR
                     VVPDLDRAARSGYQSSACGVCGKTNIDAITATSPYAVRADPVVLSPAVVAGLPNRLRE
                     HQKVFDRTGGLHAAGIFTSDGEPLVVREDVGRHNAVDKVVGWAGRQGLLPLTGHVLVV
                     SGRASFELVQKAVMAGLPILVAVSAPSSLAVDLAVESGLTLVAFTRSPRMTVYAGAHR
                     LGLTGQ"
     gene            3955..6720
                     /gene="aceE"
                     /locus_tag="VGN19_03615"
     CDS             3955..6720
                     /gene="aceE"
                     /locus_tag="VGN19_03615"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEV7195006.1"
                     /translation="MVAREEAGPILNGIPSQLPDIDPEETQEWLDSLDGVIEGGGRQR
                     ARYVMLKLLERAREMQVGVPSLTATDYINTISPEQEPWFPGDEDVERRYRAYLRWNAA
                     VMVHRAQRPGIGVGGHISTYASAATLYEVGFNHFWRGADHEGGGDQVFFQGHASPGMY
                     ARAYLEGRLSEDQLDGFRQEKSHIVAGQPVALPSYPHPRLMPDFWQFPTVSMGIGPMN
                     AIYQAQFNKYLQNRGIKDTSQQHVWAFLGDGEMDEPESRGLLQLAAGEELDNLTFVIN
                     CNLQRLDGPVRGNGKIIQELEAFFRGAGWNVIKVVWGRGWDPLLAQDRDGALVNLMNS
                     TSDGDYQTFRANDGKYVRDHFFGRDPRTRDMVKDWSDEDIWWQLKRGGHDYRKVFAAY
                     QAAMNHTGQPTVILAKTIKGYGLGSHFAGRNATHQMKKLTLDDLKGLRDSLKLPISDE
                     ALERDPYAPPYFHPGADDPSIQYLRERRAKLGGPLPVRRVQHEPLKLPDHSSYDIVKK
                     GTGKQQVATTMAFVRLLKELMRDKEFGKRVVPIIPDEARTFGMDSFFPTIKIYNPHGQ
                     KYTSVDAELMLAYKEAKDGQILHLGINEAGSMAAFTAVGTSYATHGQPMIPIYVFYSM
                     FGFQRTADSIWAAADQMTRGFLIGATAGRTTLTGEGLQHADGHSPIMAATNPAVVAYD
                     PAFAFEIGHIMEDGLRRMYGDNPENLIYYITVYNEPMSQPAEPEHVDREGILRGMHLF
                     APGRTEGLGDEAPRVQLLASGVGVPWVLEAQELLRNDWGVVADVWSVTSWSELRRDGL
                     ACDEQRFLHPDEEHRTPYVTQRLRDARGPVVAVSDYMRQVQDQIQPWVPGDFASLGAD
                     GFGFSDTRPAARRFFHIDGPSVAVRALQMLAARGEISGDVAREAAARYRLLDVTAGTS
                     GNAGGES"
     gene            6725..7594
                     /locus_tag="VGN19_03620"
     CDS             6725..7594
                     /locus_tag="VGN19_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012880028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7195007.1"
                     /translation="MPTPGRVAVTGSSGKLGRAVVAHLVDHGWQVLSLDRARPADTSG
                     PFVAVDLTDYGQVSEVLGGSVDEQGGPLDAVVHLAAIPAPGLVPNAATFANNSRSTYH
                     VFAGARAAGIRQVVWASSETVLGLPFDTPPPYVPVDEEYPPRPESTYSLNKALEEEMA
                     RHFCRWDPEASMTGLRFSNVMNVADYAEFASFDADALLRKWNLWGYIDARDGAQAVRK
                     ALEARLPGAEVFIIANADTVMSRSSAELVADVFPGVEVRHELGQHETLLSIDKARRLL
                     GYEPEHSWRDEVR"
BASE COUNT         1257 a         2713 c         2592 g         1107 t
ORIGIN      
        1 cctcgcacgg ccgcaccggc gcgctcatcc aggacaccga aggactgggc gaccccacca
       61 tgcggccaga agtcggacag gagcgggaag aagtacccct ccttgtcggc ccacgcgcgc
      121 tggctgaaca tgtggtcgca cgagatggcc aacacctgga catcgtcgcg gacgaaggcc
      181 cccaggttgt cgcggatctc gcacagctca ccggtgcaga tgccggagaa ggcaaacggg
      241 tagaacacga ggacgacgtt cttgcgaccc cggaagtccg tcagtgagaa gtcctggccg
      301 ttctggtcct tgagcgtgaa ctcaggagcg agtgctccga ccggcagggg cgtgcgggca
      361 ctggtcatgg cagcaagtct gccagcgggt cagcggcgcc cggtcttcgg ggccaccaga
      421 cgcgtcgccg tccagtgctc accggcattg acggcaccgg aggtgtgcag gccggccgtg
      481 gtggcggcct cctcgatgtc gctcggctcg acgtgaccgg cccgggtcgc cttgggggtg
      541 agcacgacga tgaagccgcc ctcggccagg ttggtgagcc cgtcgacgac cgcgtcgacc
      601 aggtccccgt cgtccgcccg ccaccagatc aggaccgcgt cggcgacatc gccgtagtcc
      661 tcgtcctcga ggtcggtcgt ggtgaggtcc tcgatcgcga atcgcaggtc gtcgtcgacg
      721 tcgacgtcgt agccgaactc ctggatcacc tgcccggtcg cgaaccccag gcgtgctgcc
      781 gcactgcgcg gcgcagcctg cgcggaggta ctcactgcct tctccatccc tcgtgtgacc
      841 tgtctgttga cgtgtctgtg ccgatagtcc atcgggtcgc ggcgtctttt tcaaccgagt
      901 ccacgaaaga gtccaccaaa gagacgacta aataggccgg gatgggcgcc caggtcaggc
      961 ccgcgcccgg ctcgagcggc cggtctggtc gtgcaggaag ctctctgcgt cgagcagacc
     1021 caggtgggcc agggtgaccc ggaccggacc acgcgtggag gcgatcgtca cggtagccac
     1081 tccgcgccac cgctggaggg ggccctgcct gagcccgaga gcctggatcc tcgcgtgcgg
     1141 gacgacctgg gcctccctgc ggagcgcacc gcggcggacg agtacgcagt ccggggtcac
     1201 cgcgtacccc ttgcgtcgcc agctccacgg gtcgagcacc cgggcccgcc gcgacgcggt
     1261 cgtgaacccc tcctggtgcc cctgaccggt gagcgcggcc accccgaggg agtcagcgag
     1321 ccagtcagta ggccgaggac ggatcaacgc cagcatcccg agtgcctcgg ccatcgtgcc
     1381 caccgggagc agctgggtct cggtgtcctc gtccgcccgt gaccccgccc ccgcgacgtt
     1441 gacgtgcagt cgccaccagc cgagcgggcg ccagaacatg ggctggacca acccgacagc
     1501 ctgaatccga tgcaggggaa cgctcgtcga gcgcaggtcg accagccccc ggcgcaccat
     1561 gaggcggtcg ccctgctgcc gcacggtgaa gttggcgtcc cgcaccacgt gtcgcacgtg
     1621 gcggccgccg actccgagga ccatcgggcc cagccagccc actgctccgg cgttgcccgt
     1681 cgcgaacccc acgagcagcg tcgggatcgc caccgccagg aacaccgcac caccgctgta
     1741 cagggtggcc tggatgaggc gggcattggg aactcgcaac gcgatgtgcg cggtctcggc
     1801 cacggggtcc gcggcttcgc ccacggtttc ggccgcgtcg tcgatggctg tggggcgacg
     1861 gagagtcccg gtctcgtcgg gccgctcggc cagagccagc agcagctcgc ggacctcctg
     1921 ggctctggag tcgggcagga aggccagctt gatatgggag tcccgccccc cggccgactg
     1981 gacgaccacc tcggacaggc cggtcagtcg ggccagcacc ggccgggaga tgtccacggc
     2041 ttggatgcgg tcgaacggca cctggcggtg ctgccggaag agcaggccat ggcggagctc
     2101 gaggaacgcc gtgccaatcc gaaacttcga gacgcgccag gacacccagg ctccgccgag
     2161 gatgaccccc agcaacagga ccgcgcccac cgcggcgtag agcggatggc cttgggtggg
     2221 gtcgtccccc gcagaaccga agatgcggtt cacctgctgg ctgaagacgt agcccacggc
     2281 gcccacgaac gccacgccac cgcgcaggaa cggcgacaag gggtgcaggt gctgccagcc
     2341 cgtggtgacc gagtcaccag cgctgctgtc ccgggcgggc gactcggtca cagacccgct
     2401 cgctgggact cgccacgagc ggcgagccgc tggcgcagcg cctcggcctc ggctacgggc
     2461 aggcccggga ttccggcgct cagctggggg ctggccgtgt gcagagtgac ctcggcgata
     2521 cccaacagcc ggtccagcgg accactgtgc acgtccacgt actgcaggcg cccatagggg
     2581 acgctgacca acgaccgaaa gatccggcct cgtcgcacga ccagctcctc ttccagctcc
     2641 acccagctga tcgccgacac ctggcgcagc accacccacg tccccccgac gccgaccaga
     2701 gcgaccgcga ccaccgccca ccaccacccg tcagcgacct ggaaggcgag cacgaccgcg
     2761 acgccgaggg gcaccaccag gcctgctgcc aacagcgtca agcgggcggg gacgagcttc
     2821 gcggagactg gccgccacgg catacccgag tcgtcgaaca gacggacttc cggacgctca
     2881 cgcaagggtg cctggggagt gtcactcacc ccaccaacct agccaacccg cgttcggccg
     2941 gcggaggcac tcatggcgat tcagcctgca gcctagagtc gggcacatgg gtcgcgtcac
     3001 gagtcgcaca ccgagcatcc gggtcctggt cgaggccgac ggcgtcgctc acgcggcggg
     3061 gcgtccggac accctggccg tcgaggaacc tctcgagatc cgggtcgacg gcacggccgt
     3121 gaccgtgacc atgcgcactc ccggcgacga cttcgacctg acagtgggca acctgctcac
     3181 cgagggggtg ctccgctcgg ccgaccaggt cagccggctg atgcactgcc tggacgagga
     3241 cgagtccgga tcgcccacct acaacgtcgt cgacgtgacc ctcgcgccgc gagtcgtccc
     3301 cgacctcgac cgggccgccc gctccgggta ccagtccagc gcctgcggcg tctgcggcaa
     3361 gacgaacatc gacgcgatca ccgcgacgag cccgtatgcc gtgcgcgcgg atccggtggt
     3421 cctgtccccc gccgtcgtgg ccgggttgcc caaccggctg cgcgagcacc agaaggtctt
     3481 cgaccgcacc ggcgggctgc atgccgccgg catcttcacc tccgacgggg aaccgttggt
     3541 ggtccgcgag gacgtcggtc gccacaacgc ggtggacaag gtggtgggct gggccggacg
     3601 gcagggcctg ctgccgctga ccgggcacgt cctggtcgtc agtggacggg cgagcttcga
     3661 gctggtgcag aaggcggtga tggccggcct gccgatcctc gtcgcggtgt ccgcgccctc
     3721 gtctctggcc gtcgacctgg ccgtggaatc cggactgacc ctggtggcct tcacgcggtc
     3781 cccacggatg actgtgtatg ccggggctca ccggctcggc cttactggcc agtagccaga
     3841 ccgagccgtg gtccggttgt gacctgcgcc tcgttggggt ggaagatggt cgacggaggc
     3901 tgctggcaac cccgccgcct ctcgtcaaag cagcctgaga gaggactcac caccgtggtc
     3961 gcacgcgagg aagccggacc catcctgaac ggcatcccca gccagcttcc ggatatcgac
     4021 ccggaggaga cccaggagtg gctcgactcc ctcgacggcg tcatcgaggg cggagggcgg
     4081 caacgcgcgc gctacgtgat gctgaagctg ctggagcgag cccgcgagat gcaggtgggg
     4141 gtcccgtcac tgacggcgac cgactacatc aacaccatct cgcccgagca ggagccctgg
     4201 ttccccggcg acgaggacgt ggagcgccgc taccgcgcct acctgcgttg gaacgcagcc
     4261 gtgatggtgc accgtgccca gcgtccgggg atcggggtgg gcggtcacat ctccacctat
     4321 gcctccgcgg ccaccctcta cgaggtgggc ttcaaccact tctggcgcgg cgccgaccac
     4381 gagggtggtg gcgaccaggt cttcttccag ggccacgcct cccccggaat gtatgcccgg
     4441 gcctatctcg agggccggct gtccgaggac cagctcgacg gcttccgcca ggagaagagc
     4501 cacatcgtcg cgggacagcc ggtggcgctg ccctcatacc cgcacccgcg cctcatgccg
     4561 gacttctggc agttcccgac cgtgtcgatg ggcatcggcc ccatgaacgc gatctaccag
     4621 gcgcagttca acaagtacct gcagaaccgc gggatcaagg acaccagcca gcagcacgtc
     4681 tgggccttcc tcggcgatgg cgagatggac gagccggagt cgcgtgggct gctccagctg
     4741 gccgcgggcg aggagctcga caacctgacc ttcgtcatca actgcaacct gcagcgtctc
     4801 gacgggccgg tgcgtggcaa cggcaagatc atccaggagc tcgaggcctt tttccgcggc
     4861 gccggctgga acgtcatcaa ggtcgtctgg ggccggggct gggacccgct gctcgcccag
     4921 gaccgcgacg gcgccctcgt caacctgatg aacagcacca gtgacggcga ctaccagacg
     4981 ttccgggcca acgacggcaa gtacgtgcgc gaccacttct tcggtcgcga cccgcgcacc
     5041 cgcgacatgg tcaaggactg gtccgacgag gacatctggt ggcagctgaa gcgtggtggc
     5101 cacgactacc gcaaggtgtt cgcggcatac caggcagcga tgaaccacac cggccagccc
     5161 accgtgatcc tcgccaagac catcaagggt tatggcctgg gcagtcactt cgccggccgc
     5221 aacgccacgc accagatgaa gaagctgacc ctggacgacc tcaaggggct gcgcgacagc
     5281 ctcaagctgc cgatctcgga cgaggcgctc gagcgcgacc cgtacgcgcc gccgtacttc
     5341 caccccggcg ccgacgaccc gagcatccag tacctgcgcg agcgccgcgc gaagctcggc
     5401 ggtccgctgc cggtgcgacg cgttcagcac gagccgctca agctgcccga ccactcctcc
     5461 tacgacatcg tcaagaaggg caccggaaag cagcaggtcg ccacgacgat ggcgttcgtt
     5521 cgcctgctca aggagctcat gcgggacaag gagttcggca agcgggtggt gccgatcatc
     5581 cccgacgagg cccggacctt cgggatggac tcgttcttcc cgacgatcaa gatctacaac
     5641 ccgcacgggc agaagtacac ctccgtcgac gccgagctga tgctggccta caaggaggcc
     5701 aaggacgggc agatcctgca cctgggcatc aacgaggccg gctcgatggc ggccttcacg
     5761 gcggtcggca cctcctacgc gacgcacggc cagccgatga tcccgatcta cgtcttctac
     5821 tcgatgttcg ggttccagcg cacggccgac tcgatctggg ccgcggccga ccagatgacc
     5881 cgtggcttcc tcatcggcgc cacggctggt cgcaccacgc ttacgggcga ggggctccag
     5941 cacgccgacg gtcacagccc gatcatggcc gcgaccaatc ctgcggtggt ggcctacgac
     6001 ccggcgttcg cgttcgagat cggtcacatc atggaggacg ggctgcgccg gatgtacggc
     6061 gacaaccccg agaacctcat ctactacatc accgtctaca acgagccgat gagccagccg
     6121 gccgagcccg aacacgttga ccgcgaaggg atcctgcgcg gtatgcatct ctttgcgccg
     6181 ggccggaccg agggcctggg cgacgaggcg ccccgggtcc agctgttggc gtccggagtc
     6241 ggcgttccgt gggtgctcga ggcccaggag ctgctgcgca acgactgggg tgtggtcgct
     6301 gacgtgtggt ccgtgacctc gtggagcgag ctgcgccgcg acggtctggc ctgcgacgaa
     6361 cagcgcttcc tgcaccccga cgaggagcac cgcacgccgt acgtcacgca gcgactccgg
     6421 gatgcgcgag gaccggtcgt cgcggtgtcg gactacatgc gccaggtgca ggaccagatc
     6481 cagccctggg tgccgggcga cttcgcctct ctcggggccg acgggttcgg cttctccgac
     6541 acccggccgg cggcgcggcg gttcttccac atcgacgggc cttcggtcgc ggtgcgggct
     6601 ctgcagatgc tggcggcgcg cggagagatc tccggtgacg tggcccgcga ggctgcggcg
     6661 cgctatcgcc tgctcgacgt caccgcaggc acgtccggca acgctggcgg cgagagctaa
     6721 ggggatgccg accccgggtc gcgtcgcggt cacgggctcg tccggcaagc tcggccgtgc
     6781 cgtcgtcgcc cacctcgtcg accacggctg gcaggtgctg tcgctggacc gcgcccggcc
     6841 tgcggacacc tccggcccgt tcgtggccgt cgacctcacc gactacggcc aggtctccga
     6901 ggtcctcggc ggctcggtgg acgagcaggg tgggccactg gatgccgtgg tgcacctggc
     6961 ggcgatccca gccccgggcc tggtgcccaa cgccgccacg ttcgccaaca actcgcggtc
     7021 gacctaccac gtcttcgcgg gcgcccgggc ggccggcatt cgacaggttg tgtgggcctc
     7081 gagcgagacg gtcctcgggc tgccgttcga cactcccccg ccctacgtcc ccgtcgacga
     7141 ggagtaccca ccgcgaccgg agtcgaccta ctccctgaac aaggcgctcg aggaggagat
     7201 ggcccgacac ttctgccgct gggatcccga ggcgtccatg accggcctac ggttctccaa
     7261 cgtgatgaac gtggccgact atgccgagtt cgcgtcgttc gacgcggatg ctctgctgag
     7321 gaagtggaac ctctggggct acatcgacgc ccgggacggt gctcaggccg ttcggaaggc
     7381 tctcgaggcg cgcctgcccg gcgccgaggt cttcatcatc gccaacgccg acacggtgat
     7441 gagccggtcc agcgccgagc tcgtggccga cgtgttcccc ggcgtcgagg tccgccatga
     7501 gctcgggcag cacgagacgt tgctgtcgat cgacaaggcc aggcggctgc tggggtacga
     7561 gcccgagcac tcctggcgcg acgaggtgcg ctgagcgccg ccgacggttc gcaccgacca
     7621 ttgtggacgg catacaaata gactttcggt atgccggcac ctcacctcg
//
LOCUS       DASYFY010000194         1668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1643207, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000194 DASYFY010000000
VERSION     DASYFY010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1643207"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..645
                     /gene="arfB"
                     /locus_tag="VGN19_03625"
     CDS             160..645
                     /gene="arfB"
                     /locus_tag="VGN19_03625"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012751021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HEV7195008.1"
                     /translation="MRALAAGRPQPGVALQVPPGPGLPSGLRIEAGELVERFSRSSGP
                     GGQGVNTTDSRVELEYDPATSVAVAALPEATRMRLLARLESRLVGGRILVVASEHRAQ
                     RQNRIAARQRLVTMVREAAAPDPPSRRATRPTAGSRRRRLDGKKRRAQLKASRRSTGD
                     D"
     gene            complement(606..1406)
                     /locus_tag="VGN19_03630"
     CDS             complement(606..1406)
                     /locus_tag="VGN19_03630"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195009.1"
                     /translation="MNTCEPVAPTLTGERTAPDVWHENYWFRRHEAAYLEVGGWVAKE
                     PALVVDAGCGEGYAATILRDGWPAARVLGLDYDPATTAHAARTYGDATTAYLRAGLTA
                     LPLASQVADVTLSLQVLEHIWTPGAYVSELARATAPGGTLVLSTPNRLTFSPGLGRRE
                     RPVNAYHCREYDAEELAGELAHWLPGWSVTLHGLGHGPRLRAWEAEHADLPSSQQLTD
                     PDRWSPALAQLVRSVRCEDFELGAPDAGCLDLVAVAQSSPVERRDALS"
     gene            1531..>1668
                     /locus_tag="VGN19_03635"
     CDS             1531..>1668
                     /locus_tag="VGN19_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta"
                     /protein_id="HEV7195010.1"
                     /translation="MNIVVCVKYVPDAQSDRTFNDSDNTTDRVGVDGLLSELDEYAVE
                     EA"
BASE COUNT          247 a          582 c          604 g          235 t
ORIGIN      
        1 caacggccag acaccatgcc cgggcaacca gggcaggtgc gagtgcagga cgaggcagaa
       61 cgctcccggc acggtcgagg tcacgacgga ccagtgtgcc gcagccgcgg tgccccctgg
      121 accgcacact gccgtacccc ggtgtggtga ggtgggcggg tgagagcgct ggcagccggt
      181 cgaccccagc ccggcgtggc cctgcaggtg ccacccgggc cagggctgcc ctcggggctg
      241 cggatcgagg cgggcgagct cgtggagcgg ttctcgcgct cctctggccc aggaggtcag
      301 ggggtcaaca ccacggacag ccgggtcgag ctggagtacg acccggccac gtcggtcgcg
      361 gtcgccgccc tgccagaggc gaccaggatg cggctgctgg ctcgcctcga gtcccggctg
      421 gtcggagggc ggatcctcgt ggtggcttcc gagcaccggg cgcagcgcca gaaccggatt
      481 gccgcacgac agcgactggt cacgatggtc cgcgaggcgg ccgcacccga cccgccctcc
      541 cgccgtgcca cccggcccac cgcggggtcc cgtcgtcgtc gcctggacgg caagaagcgc
      601 agggctcagc tcaaggcatc acggcgctcg accggcgacg actgagccac cgctacgagg
      661 tccaggcagc cggcatcggg tgcgccgagc tcgaagtcct cgcatcgaac cgacctgacc
      721 agctgtgcga gcgcgggcga ccaacggtcg gggtcggtca gctgttggga ggatggcagg
      781 tctgcgtgtt ccgcctccca ggcgcgcagc cgcgggccgt ggccgagacc gtgcagggtc
      841 accgaccacc ctggcagcca gtgggccagc tcgccggcca gctcctcggc gtcgtactcg
      901 cggcagtggt aggcgttgac ggggcgctcg cgccgaccca ggccgggcga gaaggtcagc
      961 cggttcggtg tcgacagcac cagggtgcca ccgggtgcgg tcgctctggc gagctccgac
     1021 acgtaggccc cgggggtcca gatgtgttcg agcacctgca gcgacagggt gacgtccgcg
     1081 acctggctgg ccaagggcag ggccgtcagt cccgctcgca ggtatgccgt tgtcgcgtcg
     1141 ccgtaggtcc gggcggcgtg ggcggtggtc gccgggtcgt agtcgaggcc gagcacgcgc
     1201 gccgccggcc acccgtcgcg caggatcgtc gcggcatacc cctcgccgca tccggcatcg
     1261 acgaccagcg caggctcctt ggcgacccac ccgccgactt cgaggtaggc cgcctcgtgc
     1321 ctccggaacc agtagttctc gtgccatacg tcaggggccg tgcgttcgcc cgtcagggtc
     1381 ggggcgaccg gttcgcacgt gttcactgtc acctcctggt caggcccgtg gtgagcgtca
     1441 cgcgatcctg gcgtgtcgat tcgggccggc gactgtaagg atggcacctg acctcagttc
     1501 gacccctacc tggaagagga cgatcaccgc atgaacatcg tcgtctgcgt gaaatacgtg
     1561 ccggatgcac agtccgatcg cacgttcaac gactccgaca acaccaccga ccgggtgggt
     1621 gtcgacggtc tgctctccga gctcgacgag tacgccgtcg aggaggcc
//
LOCUS       DASYFY010000195         9724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1275994, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000195 DASYFY010000000
VERSION     DASYFY010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9724
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275994"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1679
                     /locus_tag="VGN19_03640"
     CDS             <1..1679
                     /locus_tag="VGN19_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEV7195011.1"
                     /translation="DVGGGFGGKLQHTPEEVIAVLAARHTGKPVKYTETRSESLVSGH
                     HGRDQWQKLTLAATKDGTVTGLKVDLLADMGAYLGLVTSGIPILGAFMFNAIYKFPAY
                     QFNCTNVFTNKTWTDAYRGAGRPEATYAIERLMDELAVEVGVDPLAIREKNWIRHEEF
                     PFTTVAGMTYDSGNYEAATARARELFDYDGLRREQQQRRDEQNPVQLGLGVSTFTEMC
                     GLAPSRVLGALRYAAGGWEHAAIRMLPTGKVEVVTGTSPHGQGHETVWSQIVADKLGV
                     PFEDVEVLHGDTQVSNRGLDTYGSRSLVVGGQALVLAADKVIEKARPVAAHLLEASVD
                     DIEFSGGVFRVKGTDKGKAMAEVVWEAFTSHDLPEGVEPTIDADATSDPVDVSFPHGT
                     HLCAVEVDTETGQVTVRSYVSVDDVGVIMNPLIVEGQLHGGIVQGMAQALWEEAVYDE
                     QGTLVSGSFVDYTLPTSADTISFVNDTTVSPSTTNDLGAKGVGEAGCIASTPAVVNAI
                     VDALRPLGINDIQMPCTPERVWRAIQSAGSGSAGSAGSAGTGSTEMGAEQ"
     gene            1676..2530
                     /locus_tag="VGN19_03645"
     CDS             1676..2530
                     /locus_tag="VGN19_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEV7195012.1"
                     /translation="MIPSKFDYVAPTSLSQALAALADGGEDAKVLAGGQSLLPILRMR
                     LNTPGLLVDLGRVEELRGIREDGDDLVVGAMTTYAELLASDAVRRHAGVLAAAVQEVA
                     DPQIRHRGTVGGALAHADPAGDVGAPALALDARFVITGPGGARTVAADEFFQDLFETA
                     VGEGELLTAIRVPKHTGWGSRYEKFVRVSHQWSIVGVAATVRIADGTIAEAGIGLTNM
                     GSTPLRARAVEQALVGGPATEAAIAQACVAAADGTNPPSDLNGDADYRRHLATVLTRR
                     AVLAAVGG"
     gene            2535..3200
                     /locus_tag="VGN19_03650"
     CDS             2535..3200
                     /locus_tag="VGN19_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7195013.1"
                     /translation="MQLSHSFTVPASVERTWETFMDLESVGGCFPGATVTEVTDAGFA
                     GTVKVKLGPIALVYSGSGSFVERDDITHRAVIEAKGKDKRGNGTAGARVRIQLSDAGD
                     GSTRAEVDTDLAVTGKPAQFGRGVLQDVSDKLLQQFVGCVESTLAPPPPAPRPAAVTT
                     PVTTLAPAPVPTASAPPEPAALDLGSAVLPSVLRIYGRQVGAGLLALLALVVVLCRRR
                     RGR"
     gene            3363..3812
                     /gene="aroQ"
                     /locus_tag="VGN19_03655"
     CDS             3363..3812
                     /gene="aroQ"
                     /locus_tag="VGN19_03655"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015938331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEV7195014.1"
                     /translation="MSQPTIVVLNGPNLNLLGEREPETYGTDTLADIEALCRKAAGLA
                     GLDVDFRQSNHEGALIDAIHEVRHSAAGIVINAGAYSHTSLALRDALAAVTIPVFEVH
                     LSNIKAREKFRHHSYLSGVCNGVILGCGSSGYAYAIARISELIDPRH"
     gene            3919..3991
                     /locus_tag="VGN19_03660"
     tRNA            3919..3991
                     /locus_tag="VGN19_03660"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3952..3954,aa:Thr,seq:ggt)
     gene            4024..4097
                     /locus_tag="VGN19_03665"
     tRNA            4024..4097
                     /locus_tag="VGN19_03665"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4058..4060,aa:Met,seq:cat)
     gene            4211..4381
                     /gene="rpmG"
                     /locus_tag="VGN19_03670"
     CDS             4211..4381
                     /gene="rpmG"
                     /locus_tag="VGN19_03670"
                     /inference="COORDINATES: protein motif:HMM:NF001764.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEV7195015.1"
                     /translation="MASKSADVRPKITLACVDCKERNYITKKNRRNNPDRLEMKKFCP
                     RDGKHTLHRETR"
     gene            4479..4925
                     /locus_tag="VGN19_03675"
     CDS             4479..4925
                     /locus_tag="VGN19_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase N-terminal
                     domain-containing protein"
                     /protein_id="HEV7195016.1"
                     /translation="MVVNADFAGRTYPPSGPYAVDAASLAAFAAAVGSTDPVHSSPEA
                     AQAAGYSDVIAAPTFAVTIAQRCDRQLIEDPESGIDFSRVVHGEQRFVHHRPITAGDS
                     VLGTLTVDAVREAGGHAMVTTRTELTTESGEALCTSTSTIVIRGGE"
     gene            4928..5350
                     /locus_tag="VGN19_03680"
     CDS             4928..5350
                     /locus_tag="VGN19_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEV7195017.1"
                     /translation="MAVRTLADTAVGDAIGPVSVPVARETLVAYANASGDQNPIHQDE
                     DFAKAVGLPDVIAHGMFTMGAAASVVEEWVGDGGRVVEYGTRFTKPVVVPREGAQLEV
                     TGVVKSLDDDTRRATVELTATSEGAKVLGRCVAVVQLD"
     gene            5388..6470
                     /locus_tag="VGN19_03685"
     CDS             5388..6470
                     /locus_tag="VGN19_03685"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEV7195018.1"
                     /translation="MRVEHDVPLASLTTMRVGGPASRLVVAETIDEVVDTVREVDDAD
                     EPLLVLGGGSNLVVADAGFPGTVVRLANEGVAVESADLCGGVMVRVGAAVGWDDFVAQ
                     AVAEGWSGVEALSGVPGSTGATPVQNVGAYGQEVAQTIASVRVWDRSGQQVRTLANHD
                     CGFTYRHSLFKASDRYVVLDVLFQLTPSDLSRPVGYADLARQLGVGTGERVPLADARA
                     AVLAQRRQRGMVLDEADHDTWSCGSFFTNPILSTAQYDALALRARDRLGADGPQPPRF
                     PDADGSERRVKTSAAWLIDQAGFGKGYAMPGPAALSTKHTLAITNRGGATAQDIAALA
                     REIRDGVLEAFGVTLVNEPVFVGHTL"
     gene            complement(6479..7510)
                     /locus_tag="VGN19_03690"
     CDS             complement(6479..7510)
                     /locus_tag="VGN19_03690"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0009168 - purine ribonucleoside
                     monophosphate biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEV7195019.1"
                     /translation="MSRSVSSLPKAHLHLHFTGSMRVTTVQDLARQHGLRLPDALTTG
                     WPPRLSGRDERGWFRFQRLYDAARACVREADDLRRIVREAAEDDAMEGSRWLELQVDP
                     TSYAPFVGGITPALEIVLDEARRVSAQGGTQVAVIVAANRVRHPLDARTLARLASRYA
                     GDGPGDVVGFGLSNDERRGVTQEFAPAFEIARRAGLALVPHAGELLGPAAVEATVEAI
                     TPDRIGHGVRCVEDPRVLDLVAQSGIALEVCPLSNVALGVYAAAGQVPLRAIVDRGIP
                     VALGADDPLLFGSRLVAQYETARGPLGFDDAELAELARGSFRASRAPAGLMKQALADI
                     DAWLAAPAQ"
     gene            complement(7742..7903)
                     /locus_tag="VGN19_03695"
     CDS             complement(7742..7903)
                     /locus_tag="VGN19_03695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195020.1"
                     /translation="MSDQPGTESIEDDLGSYSVDDAIDSGSGQDELLDASEGDNEPWS
                     PPDQQPRNT"
     gene            complement(7962..9263)
                     /locus_tag="VGN19_03700"
     CDS             complement(7962..9263)
                     /locus_tag="VGN19_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEV7195021.1"
                     /translation="MTEQTSTAATAPLAQRARADLETFAAEQRAAYEALTALGLALDL
                     TRGKPAAAQLDLSNDLLGLPQGTVDAHGVDTRNYGGLEGIAELREMFAELLGVDPNQI
                     VAGGNSSLVMMREVLVDLWLHGAVDSERPWGQEEKVTFICPVPGYDRHFTLLSWFGID
                     MVTVPMNHDGPDAEAIARLVAGDPTIKGMWVVPTYANPTGSVATQEVAARLATMATAA
                     PDFKIFWDNAYALHHLSEDEAKSADILGLASAAGHPHRPIMFASTSKITMAGAGVAFL
                     AGSVENVAWYIGHLGKGAIGPDKVNQLRHAQFFGSPQGVRDHMVKHREIIAPKFAEVE
                     RILTERLGGLGVATWTTPTGGYFVSLDVLDGTASRVVELAKAAGVALTPAGASFPNGV
                     DPRDRNIRLAPTFPPLEQVTGAMEAVATCVLLASAEKLRQA"
     gene            9558..9630
                     /locus_tag="VGN19_03705"
     tRNA            9558..9630
                     /locus_tag="VGN19_03705"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9591..9593,aa:Trp,seq:cca)
BASE COUNT         1444 a         3372 c         3414 g         1494 t
ORIGIN      
        1 ctgacgtcgg aggtgggttc gggggaaagc tccagcacac cccggaggag gtcatcgcgg
       61 tcctcgcggc gcggcatacc ggcaagccgg tgaagtacac cgagacccgc agcgagtcgc
      121 tcgtctcagg ccaccacggt cgcgaccagt ggcagaagct caccctggcg gcaaccaagg
      181 acggcacggt gaccggtctc aaggtcgacc tgctggccga catgggtgcg tacctcggct
      241 tggtcacctc tggcatcccg atcctcgggg ccttcatgtt caacgcgatc tacaagttcc
      301 cggcatacca gttcaactgc accaacgtgt tcaccaacaa gacctggacg gacgcctacc
      361 gcggtgctgg gcgccctgag gcgacctatg ccatcgagcg actcatggac gagctcgcgg
      421 tcgaggtcgg ggtcgacccg ttggcgatcc gggagaagaa ctggatccgg cacgaggagt
      481 tcccgttcac cacggtggcg ggcatgacct acgactcggg caactacgag gcagcgaccg
      541 cccgggccag ggagctgttc gactacgacg gcctgcggcg ggagcagcag cagcggcgcg
      601 atgagcagaa cccggtccag ctcggcctgg gggtgtcgac cttcaccgag atgtgtgggc
      661 tcgctccgtc gcgggtgctc ggggctttgc ggtatgccgc gggcggctgg gagcacgccg
      721 ccatccgcat gctccccacg ggcaaggtcg aggtggtgac ggggacgtcc ccgcacggcc
      781 aggggcacga gacggtgtgg agccagatcg tcgccgacaa gctcggcgtc ccgttcgaag
      841 atgtcgaggt cctgcatggc gacacgcagg tgtccaaccg cgggctggac acctacggct
      901 cgcgctcgct ggtggtcgga ggccaggccc tggtcctggc cgccgacaag gtcattgaga
      961 aggcccggcc ggtggccgcg cacctgcttg aggcaagcgt cgacgacatc gagttctccg
     1021 gcggggtgtt ccgggtgaag gggaccgaca agggcaaggc catggccgag gtcgtgtggg
     1081 aggccttcac cagtcatgac ctgcccgagg gggtcgagcc caccatcgac gccgacgcca
     1141 cctccgaccc ggtggacgtc tcgttcccgc acggcaccca tctgtgcgcc gtcgaggtcg
     1201 acaccgagac gggtcaggtg acagtgcgta gctacgtctc ggtcgatgac gtcggggtga
     1261 tcatgaaccc gctcatcgtc gagggacagc tgcacggcgg aatcgtccag ggcatggcgc
     1321 aggcgctctg ggaggaggcg gtctacgacg agcagggcac gctggtgtcg ggttcgttcg
     1381 tcgactacac gctgccgacc tcggcggaca cgatctcctt cgtcaacgac accacggtct
     1441 ccccttcgac gacgaacgac ctcggcgcca agggcgtggg ggaggcaggg tgcatcgcct
     1501 ccaccccggc cgtcgtcaac gccatcgtcg acgcgctgcg accgttgggt atcaacgaca
     1561 tccagatgcc gtgcaccccc gagcgggtct ggcgggccat ccagtcggcg ggctcgggct
     1621 cggctggctc cgccggttct gcaggtaccg gctccaccga gatgggagcg gagcaatgat
     1681 cccctcgaag ttcgactacg tggcgcccac ctccctgtcc caggcgcttg ccgcgctggc
     1741 cgacggcggc gaggacgcca aggtgctggc cggtggccag agcctgctgc cgatcctgcg
     1801 gatgcgcctc aacacccccg ggctgctcgt cgacctgggt cgcgtcgagg agctgcgggg
     1861 catccgcgag gacggcgacg acctcgtggt cggggccatg accacgtatg ccgagctgct
     1921 cgccagcgat gcggtccgcc gccatgccgg ggtgctggcc gcggcggtgc aggaggtggc
     1981 cgacccgcag atccgtcatc ggggcacggt cgggggcgcc ctcgcgcacg ccgacccggc
     2041 cggggatgtg ggtgccccgg cgctggcgct ggacgcccgc ttcgtcatca ccggtcctgg
     2101 cggcgcgcgg accgtggcag cggacgagtt cttccaggac ctgttcgaga cggcggtcgg
     2161 cgagggcgag ctcctcaccg caatccgcgt gcccaagcac accggctggg gttcgcggta
     2221 cgagaagttc gtccgggtct cgcaccagtg gtcgatcgtc ggcgtcgcgg ccacggtgcg
     2281 gatcgccgat gggaccatcg ccgaggccgg catcggcctg acgaacatgg ggtcgacccc
     2341 gttgcgcgcc agggccgtgg aacaggccct cgtgggtggt ccggcgacgg aggccgccat
     2401 cgcccaggcg tgcgtcgccg ccgccgacgg caccaacccg ccctcggacc tcaacggcga
     2461 cgccgactat cgccggcacc tggccacggt gctcacgcgg cgtgcggtgc tggcggcggt
     2521 cggaggatga gctcgtgcag ctgagtcact ccttcaccgt gcccgcgtcg gtcgagcgga
     2581 cctgggagac gttcatggac ctcgagtccg tgggcggctg cttcccgggc gccacggtca
     2641 ccgaggtgac cgacgccggc ttcgcgggca cggtgaaggt caagctggga ccgatcgccc
     2701 tggtgtattc cggttccggc tccttcgtcg aacgcgacga catcacgcac cgggccgtca
     2761 tcgaggccaa gggcaaggac aagcggggca acggcaccgc cggggccagg gtcaggatcc
     2821 agctctcgga cgccggtgac ggctcgaccc gggccgaggt cgacaccgac ctggccgtga
     2881 ccggcaagcc ggcgcagttc gggcgcggag tgctgcagga cgtctcggac aagctgctgc
     2941 agcagttcgt cgggtgtgtc gagtccacgc tcgccccgcc cccacccgca ccccggccgg
     3001 cggccgtgac cacccccgtc acgactctcg cgcccgcccc tgtcccgacg gcctcggcgc
     3061 ccccggaacc cgccgccctc gacctgggct ccgccgtcct gccttccgta ctgcggatct
     3121 acgggcgtca ggtcggcgcc gggctgctgg cccttctcgc tctggtcgtc gtgctatgcc
     3181 gccgacgccg cgggcgctga cccgcacgcc gggttagccg aacggctgat gtctcaagct
     3241 ttgggataca tagggaggag gctgtcctag tctgacgctc gggcgagaac tcctcgctca
     3301 gctcgcgcgc atggtcaacc cccccggggc cgcacgcccc accgagcaca ggagtaccca
     3361 ggatgagcca gcccaccatc gtcgtcctca acgggccgaa cctcaacctg ctcggtgagc
     3421 gcgagccgga gacctatggg acggacaccc tggccgacat cgaggcactg tgtcgcaagg
     3481 cggccgggct tgccgggctc gacgtggact tccgtcagag caaccacgag ggcgccctga
     3541 tcgacgcgat ccacgaggtc cggcacagtg cggccggcat cgtcatcaac gcgggtgctt
     3601 actcgcatac gtccctggcg ttgcgtgatg cgctggcagc agtgacgatc ccggtgttcg
     3661 aggtgcacct gagcaacatc aaggcgcgcg agaagttccg gcaccactcg tacctctctg
     3721 gggtctgcaa cggggtcatc ctcggctgcg gatccagcgg ctacgcctac gccatcgccc
     3781 gaatctccga gctcatcgac ccgcgtcact gacgcacggg ccgccggctg gtgcgcggca
     3841 taccctcgat tttcgatgag gggaccccag cgtgtagtct caccgacgca cttccgcggg
     3901 gtctgcgacc ggcggagcgc ccccttagct cagtcggtag agcgtttcca tggtaaggaa
     3961 aaggtcgtcg gttcgattcc gacagggggc tctgggatgg cgtcgtaagg cgtcgcaccc
     4021 catggcgggg tagctcagct ggttagagcg cacgactcat aatcgtgagg tcgcgggatc
     4081 gagccccgct cccgctacaa ccgtgatttc aggattgacc ctggattcgc gtattctgat
     4141 gcgtcgccac tgcgtcatcg cggcgtgcgg ccccatttac caccagtcag ttccgagagc
     4201 aggttgcccc gtggctagca agagcgcaga cgtccgcccc aagatcacct tggcgtgcgt
     4261 ggattgcaag gagcgcaact acatcaccaa gaagaaccgg cggaacaacc ccgaccgcct
     4321 ggagatgaag aagttctgcc cccgcgacgg caagcacacg ttgcaccgcg agacccgctg
     4381 acccgacgcg cctcccggcg catcattgac agccgccctg gaccgagtcc gtgggcggct
     4441 ttgtcatggt cgagcggcgg ccgaatagag tgggcgccat ggtcgtgaac gcagacttcg
     4501 cagggcgcac ctatccaccc agcggcccgt atgccgtgga cgcggcgtcg ttggccgcct
     4561 tcgcggcggc cgtcggctcg accgatccgg tgcacagctc gccggaggct gctcaggcgg
     4621 cgggctactc cgacgtcatc gcagcgccga ccttcgcggt gaccatcgcc cagcgctgtg
     4681 accgtcagct gatcgaggac cccgagtcgg gcatcgactt cagccgggtc gtgcacggtg
     4741 agcagcggtt cgtgcaccac cgtccgatca ctgccggtga ctcggtgctg gggaccctca
     4801 ccgtcgacgc cgttcgcgag gccggcggtc acgccatggt gaccacccgc accgagctga
     4861 ccaccgagtc cggcgaggcg ctgtgcacct cgacctcgac catcgtgatc cgaggagggg
     4921 agtgagcatg gctgtgcgca ccctggccga cacagcagtc ggcgacgcca tcggcccagt
     4981 gagcgtgccg gtggctcgcg agaccctggt ggcctacgcc aacgcctccg gggaccagaa
     5041 ccccatccac caggacgagg acttcgccaa ggccgtgggg ctgcctgacg tcatcgccca
     5101 tgggatgttc acgatgggcg ccgcagcctc cgtcgtcgag gagtgggtcg gtgatggtgg
     5161 ccgggtcgtg gagtacggca cccggttcac caagcccgtc gtcgtgccgc gcgaaggtgc
     5221 ccagctcgag gtgacgggcg tcgtgaagtc gctcgacgac gacacccgcc gggccaccgt
     5281 cgagctcacc gcgacgagcg agggagccaa ggtcctcggc cgctgcgtcg ccgtcgtcca
     5341 gctcgactga cgtctactga cgaccactga ctgcgactga ccagccgatg cgagtagagc
     5401 acgacgtccc cctggcgtcc ctgacgacca tgcgcgtggg cggtccggcg tctcggctgg
     5461 tcgtggccga gaccatcgac gaggtggtcg acacggttcg cgaggtggac gacgccgacg
     5521 agccgctgct ggtcctcggc ggcgggagca acctggtcgt ggcggatgcc gggttcccgg
     5581 ggacggtggt tcggctggcc aacgagggcg tggccgtcga gtcggcagac ctgtgtgggg
     5641 gagtgatggt ccgcgtcggg gcggcggtcg gctgggacga cttcgtggcc caggcggtcg
     5701 cggaaggctg gtccggggtc gaggccctgt ccggcgtccc gggctcgacg ggggccaccc
     5761 ctgtgcagaa cgtgggtgcc tatggtcagg aggtcgccca gacgatcgcc tcggtgcgcg
     5821 tctgggaccg ctcgggccag caggtccgga ccctggccaa ccacgactgc gggttcacct
     5881 atcggcattc gctgttcaag gcgtccgacc gctacgtcgt gctcgacgtg ctgttccagc
     5941 tgacgccgag tgatctcagc cggcccgtcg ggtatgccga cctcgcccgc cagctcgggg
     6001 tcggcacggg tgagcgggtg cccctggccg acgcgcgcgc ggcggtgttg gcgcagcggc
     6061 ggcagcgcgg gatggtgctc gacgaggcgg atcacgacac ctggtcgtgt ggctcgttct
     6121 tcaccaaccc gatcctgtcg accgcgcagt acgacgcgct ggcgcttcga gcccgtgatc
     6181 gcctcggtgc cgatggcccg cagccgccgc gcttcccgga cgccgacggc agcgagcgcc
     6241 gggtcaagac cagcgctgcg tggctcatcg accaggccgg cttcggcaag ggctatgcca
     6301 tgcccggtcc agccgccctg tccaccaagc acaccctcgc gatcaccaac cgcgggggag
     6361 ccaccgcgca ggacatcgct gcgttggctc gtgagatccg cgacggagtg ctggaggcct
     6421 tcggcgtcac gctggtcaac gagccggtgt tcgtcggcca cacgctctga cgtcgagctc
     6481 actgcgccgg agcggccaac cacgcgtcga tgtcggccag ggcctgcttc atcagcccag
     6541 ccggcgcacg cgacgccctg aaggagcccc gggcgagctc agccagctcg gcgtcgtcga
     6601 acccgagcgg gccgcgcgcc gtctcgtact gggccaccaa ccgtgacccg aacagcaacg
     6661 ggtcgtccgc ccccaaagcc acgggtatgc cgcgatcgac gatcgcgcgc agcggcacct
     6721 gccctgccgc ggcatacacc ccgagcgcca cgttgctcag cgggcagacc tccagcgcga
     6781 tcccggactg ggcgaccagg tccaacaccc gagggtcctc gacgcagcgc accccgtggc
     6841 cgatccgatc cggggtgatg gcctccacgg tggcctccac cgccgccgga cccaggagct
     6901 ccccggcgtg gggcaccagt gccagcccgg ctcggcgagc gatctcgaag gccggagcga
     6961 actcctgggt gacaccacgg cgctcgtcgt tgctcaaccc gaagccgacc acgtcccccg
     7021 ggccgtcgcc ggcatacctc gaggcgagcc tggccagggt tctggcgtcc aaggggtgcc
     7081 ggacccggtt ggccgcgacg atcacggcga cctgggtgcc accctgcgcg gacacccggc
     7141 gtgcctcgtc cagcacgatc tccagggcgg gggtgatgcc acccacgaac ggggcgtacg
     7201 aggtggggtc gacctgcagc tccagccagc gcgagccctc catcgcatcg tcctcggctg
     7261 cctcccgaac gatccggcgc aggtcgtcgg cctcccggac gcaggcccgc gccgcgtcgt
     7321 acaaccgctg gaaccggaac caaccgcgct cgtcgcgccc gctcagccgc ggtggccagc
     7381 cggtggtgag ggcatccggg agccgcaacc catgctggcg cgccaggtcc tgaaccgtcg
     7441 tgacccgcat cgagccggtg aagtgcaggt gcaggtgcgc cttgggcagg ctgctgaccg
     7501 agcgcgacat ggcgagcagt cttgcaccgc ggcgcgccta gtccgccacg atgtgcatgg
     7561 ccgccgcctc gggtccgtcc ccgacctcgg cgtcgccgag ccagtcgtcg aggaccgcga
     7621 tggcgtcggt gtcctcgcca ccgacccggt tctgcgggtc gggctggtca tcgggctgct
     7681 cttgggcgag gcgctggtca atgctctcgt cctgggcctg ctccgacgca gtcgtgcccc
     7741 attaggtgtt gcgcggctgc tggtcaggcg gcgaccacgg ctcgttgtcg ccttcgctcg
     7801 cgtcgagcag ctcgtcctgt ccgctgccgg agtcgatggc gtcatcgacg ctgtagctac
     7861 ccaggtcgtc ctcgatgctt tccgtacccg gctgatcgct catggcccca ccctgcggga
     7921 gtggcggcag cggcgcaagg tggagcgggc gaccggtcgc ctcaggcctg gcgcagcttc
     7981 tccgccgagg ccagcagcac gcaggtcgcg acggcctcca tggctccggt cacctgctcc
     8041 agcggaggga aggtcggagc caggcggatg ttgcggtcgc gcgggtcgac accgttcggg
     8101 aaggaggccc cggccggcgt cagcgcgacc ccggcggcct tggcgagctc gaccacccgc
     8161 gaggccgtcc cgtcgagcac gtcgagactc acgaagtagc cgccggtggg cgtagtccac
     8221 gtcgccacgc cgagcccacc gagccgctcg gtcaggatgc gctccacctc ggcgaacttg
     8281 ggcgcgatga tctcgcggtg cttgaccatg tggtcgcgca cgccctgggg ggacccgaag
     8341 aactgggcgt gccgcagctg gttcaccttg tccgggccga tggcgccctt gccgaggtga
     8401 ccgatgtacc aggcgacgtt ctccaccgac cctgccagga aggccacgcc tgccccggcc
     8461 atggtgatct tcgaggtgga ggcgaacatg atcggccggt gcgggtgtcc cgccgccgag
     8521 gcgagcccga ggatgtcggc gctcttggcc tcgtcctcgc tgaggtggtg cagcgcgtag
     8581 gcgttgtccc agaagatctt gaagtcggga gcggccgtcg ccatcgtggc gagccgggcg
     8641 gcgacctcct gggtggcgac ggacccggtc gggttggcgt acgtcgggac gacccacatg
     8701 cccttgatgg tcgggtcgcc ggcaaccagg cgtgcgatgg cctccgcgtc cgggccgtca
     8761 tggttcatgg ggactgtcac catgtcgatc ccgaaccagc tgagcagcgt gaagtgacgg
     8821 tcgtagccgg gcaccgggca gatgaaggtg accttctcct cctggcccca cgggcgctcg
     8881 ctgtcgactg cgccgtgcag ccacaggtcg accagcacct cgcgcatcat gaccaggctg
     8941 gagttgccac cggcgacgat ctggttcggg tcgactccca gcagctcggc gaacatctca
     9001 cgcagctcgg cgatgccctc gaggccgcca tagttccggg tgtccacgcc atgggcatcc
     9061 accgtgcctt gcggcaggcc gagcaggtcg ttgctcaggt cgagctgggc ggcggcaggc
     9121 ttgccgcggg tgaggtcgag agccaggccc agtgcggtga gcgcctcgta ggccgcccgc
     9181 tgctcggcgg cgaaggtctc gaggtcggcg cgggcgcgct gggccagggg ggcggtggcg
     9241 gcggtggagg tctgctcggt cacgtgctcc atgctcccat tgctggcggt atgccgtgca
     9301 gcaggcgtcc gcgcgctggt caccccccag ccccccatcc ccaccggact acagatgttg
     9361 cgcgtgtcgc gcttgtggcg gccgattgac gcggggtgtc ggtagtccgg tcgggggagg
     9421 gggctgcccc tgtatgccgc gagttcgcgt tgggcgccgg gactcacgta tgcttcttcc
     9481 tcggttgact atggccatgc ttccggcgtg cccaaaacca gtcgcccgga acttctcgtc
     9541 cccgtgagtg gttccgtagg gcagtggctc aattggtaga gctccggtct ccaaaaccgg
     9601 cggttggggg ttcgagtccc tcctgccctg cgtagcagga cctgcggtgc cgacctggca
     9661 gcgcggcata catcagcgaa agcagaggca tcgtgacgga cgtcagcgcg cgaacgcgcg
     9721 actc
//
LOCUS       DASYFY010000196         1710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1485973, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000196 DASYFY010000000
VERSION     DASYFY010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485973"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..377)
                     /locus_tag="VGN19_03710"
     CDS             complement(<1..377)
                     /locus_tag="VGN19_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HEV7195022.1"
                     /translation="MGVLETIKGPAELKALTPAQIPALAQEIRDFLVESVSKTGGHLG
                     PNLGVVELTIALHRVFDSPRDTIVFDTGHQSYVHKLLTGRQDFSKLKKQGGLSGYPSR
                     TESEHDVVENSHASTALSWADGIA"
     gene            complement(427..>1710)
                     /locus_tag="VGN19_03715"
     CDS             complement(427..>1710)
                     /locus_tag="VGN19_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEV7195023.1"
                     /translation="PWYLTLFGRDSIWTARMMLPFGTELAAGTLRALARRQGTQDDPE
                     RAEQPGKIPHEVRRTAYEGAEGLSLPPLYYGTVDATALWVCLLVDAWRWGLPEVDVRE
                     LLPQLRAALGWLTGPGQPDSDGLLKYLDTTGHGLANQGWKDSGDSMRFRDGSVAEGPI
                     ALVEAQAYAVEALLGAADLLDSLGESGGQDARREAELLRERIHAAYWVQAGDGPAGRY
                     LAMALDGQGRPVDGLGSNMGHVLGTGVLSADQAQSVAEQVTGPELLDDFGVRTFGSGN
                     GGFNPIGYHTGSVWTHDTAIVALGLAREGQDAGAATILRRLLSAGACFDYRYPELYSG
                     LPMMGRPAPYPASCRPQAWSAASAAVLLSVAVGLQVDLPKGKIRVRPLRPAPFGAITV
                     SGLRLGQAEITVAIDSQGDVTLSGVPDGLRVSITA"
BASE COUNT          277 a          607 c          583 g          243 t
ORIGIN      
        1 gcgatgccgt ccgcccacga cagggcggtc gaggcgtgcg agttctcgac gacgtcgtgc
       61 tcggactcgg tccggctggg gtagccggac aggccgccct gcttcttgag cttgctgaag
      121 tcctgcctgc cagtgaggag cttgtggaca taggactggt gtccagtgtc gaacacgatg
      181 gtgtcgcgcg ggctgtcgaa cacccggtgc agcgcgatcg tgagctccac gacaccgagg
      241 ttgggcccga ggtgaccacc ggtcttggag accgactcca ccaggaagtc gcggatctcc
      301 tgggccagcg cggggatctg ggcaggcgtg agcgccttca gctcagccgg gcccttgatg
      361 gtctcgagca ctcccacgcg cagcagtcct ttcaaactgg ggtcaccgcc agacaaccgc
      421 ctgagtctaa gcggtgatgc tgactcgaag cccgtccggc actcctgaca gcgtcacgtc
      481 gccttgcgaa tcgatggcga cggtgatctc ggcctgcccg aggcgaagac cagagacggt
      541 gatcgccccg aacggcgccg ggcgcagcgg ccggacccgg atctttccct tcggcaggtc
      601 gacctggaga cctaccgcca ccgagagcag caccgcggcg ctggcagcac tccaggcctg
      661 cggtcggcag gacgcggggt agggcgcagg tcgacccatc atcggcagtc ccgagtagag
      721 ctcgggatag cggtagtcga aacacgcacc ggccgacagg agccggcgca ggatggtcgc
      781 ggcccccgcg tcttggccct cgcgggccag ccctagagcc acgatcgcgg tgtcgtgggt
      841 ccacaccgat ccggtgtggt agccgatcgg gttgaagccc ccgttgcccg aaccaaaggt
      901 ccgcaccccg aagtcgtcga ggagctcggg gcctgtcacc tgctcggcca ccgactgggc
      961 ctggtcggcc gacaggacgc cagtgcccag aacgtggccc atgttcgaac ccagcccgtc
     1021 gaccgggcgg ccctgcccgt ccaaggccat ggccagatag cgaccagcgg gaccatcgcc
     1081 agcctgcacc cagtacgcgg cgtggatccg ctcacgcaac agctccgcct cgcgacgggc
     1141 gtcctggccg ccagactccc ccagcgagtc gagcaggtca gccgcaccga ggagcgcttc
     1201 cacggcatac gcctgggctt ccaccagggc gatggggccc tcggcgacgc tgccgtccct
     1261 gaaccgcatc gagtctccgg agtccttcca cccctggttg gccagcccgt ggccggtggt
     1321 gtcgaggtac ttcagcagcc cgtcgctgtc cggctgaccg gggccggtga gccagcccag
     1381 ggcggcgcgc agctgcggga gcagctcgcg aacgtcaacc tccgggagac cccagcgcca
     1441 ggcgtccacg agcaggcaga cccacagcgc cgtcgcgtcg accgtcccgt agtacagggg
     1501 cgggagggac aaaccctccg caccctcgta tgccgtgcgg cgcacctcat gggggatctt
     1561 gccgggctgc tcggcgcgct ccgggtcgtc ctgcgtgccc tgacgccgag ccaaggcccg
     1621 cagggtgcca gccgccagct cggtcccgaa cggcagcatc atccgcgcgg tccagatcga
     1681 gtcgcgaccg aacagcgtga ggtaccacgg
//
LOCUS       DASYFY010000197         2551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1276197, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000197 DASYFY010000000
VERSION     DASYFY010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1276197"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..1381
                     /locus_tag="VGN19_03720"
     CDS             170..1381
                     /locus_tag="VGN19_03720"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEV7195024.1"
                     /translation="MRRSTLSLAALGAVATLAVAACGSSSNNSSSSSGSSSASGSSSA
                     KAVSAVCKAPTSAAAGASAPVPSGLKASGKVGVILPDTTSSTRYTLYDAPLLKQAFTA
                     AGLQPDIQNSGGSTSKQQQIAQSMIGEGVKVILLDSIDQTSGAAVESAAKAAGIKVID
                     YDRVNIGGSAQYYVSFDNEGVGRLQGQTLADCLGASGKANPKVILMDGGTDVDNNAVL
                     FAKGAKSVLQPLADQKKLTIVSESVVKGWKVANAAPAFTQALTAAGGQVDGVLAANDD
                     IANAVIGVLQTSGLAGHVVITGQDAGVAGLQNILKGTQSMTVFKNVAKEANAAAALTI
                     ALIGGKDPSSLGITFVSGIDPQNAGLKSLLLTPEVIVQGNVEDVVTAGALKASEICNG
                     IQAQCDAAGVK"
     gene            1523..2299
                     /locus_tag="VGN19_03725"
     CDS             1523..2299
                     /locus_tag="VGN19_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195025.1"
                     /translation="MANPMLEVKGLNKSFGPVHVLHDVDLSVYPGQVTALVGDNGAGK
                     STLVKCIAGINHIDSGEVLFEGKPVSITDPRHAAELGIEFVYQDLALADNLDITQNMF
                     LGREVRRFGFMHDGEMERKARDTLSGLSVRTVSSVRQVVANLSGGQRQTVAIAKAVLW
                     NSKIVFLDEPTAALGVAQTRQVLDLVRRLADQGRGVVLISHNMNDVLEVADRVVALYL
                     GRVAAEVESKNSSVTQIVELITSGRSGDLGLTPAAANESI"
     gene            2301..>2551
                     /locus_tag="VGN19_03730"
     CDS             2301..>2551
                     /locus_tag="VGN19_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195026.1"
                     /translation="MSEQTTDQPSTGATPAPKGTSGERASSFSLDVDRRNIPTAFREY
                     VGRLRSGEPGTLPAVLGILVLGIMFSFVSSRFLSSNNIG"
BASE COUNT          449 a          909 c          818 g          375 t
ORIGIN      
        1 cccagtcccc gcagaccctg ctcaagctcc tgacctgagg acttgccggt cgttaacaag
       61 ttggtaacgc gcccgttcgc agggcggtcg aggcaatatg ttgtcgggcg aaacgtataa
      121 ggcagccggc gccccgaccg gtcaccctca catgggaagg cgcacgtaca tgcgcagatc
      181 gacattgtcc ctcgctgcgc tcggcgcagt cgccacgctc gccgtcgccg cctgcggctc
      241 ctcctcgaac aactccagca gctccagcgg ctcgtcgtcg gcgtccggca gctcgtcggc
      301 caaggccgtc agcgctgtct gcaaggcgcc cacctcggct gcggcgggcg cctcggcacc
      361 ggtccccagc ggcctcaagg cctccgggaa ggtcggggtc atccttcccg acacgacgtc
      421 gtcgacccgc tacacgctct acgacgcacc gctgctgaag caggcgttca ccgctgcggg
      481 cctccagccc gacatccaga actctggcgg gtccaccagc aagcagcagc agatcgccca
      541 gtcgatgatc ggcgagggcg tcaaggtgat cctgctcgac tcgatcgacc agacctcggg
      601 cgccgctgtc gagtcggcgg ccaaggccgc cggcatcaag gtcatcgact acgaccgcgt
      661 gaacatcggc ggcagcgcgc agtactacgt ctcgttcgac aacgagggtg tcggcaggct
      721 ccagggccag accctcgcgg actgcctcgg cgccagcggc aaggccaacc cgaaggtcat
      781 cctgatggac ggcggaaccg acgtcgacaa caacgcggtg ctgttcgcca agggcgccaa
      841 gagcgtgctg cagcccctcg ccgaccagaa gaagctgacc atcgtgtcgg agtcggtcgt
      901 caagggctgg aaggtcgcga acgcggctcc cgcgttcacc caggcgctca ccgccgcggg
      961 cggtcaggtc gacggtgtcc tcgccgccaa cgacgacatc gccaacgccg tgatcggtgt
     1021 cctgcagacc agtggcctcg ccggccacgt cgtcatcacc ggccaggacg ccggtgtggc
     1081 cgggctgcag aacatcctga agggcaccca gagcatgacg gtgttcaaga acgtcgccaa
     1141 ggaggccaac gccgctgccg ccctgacgat cgcgctgatc ggtggcaagg acccgtcgag
     1201 cctggggatc accttcgtct cgggcatcga cccgcagaac gccggcctga agtcgctgct
     1261 gctgaccccc gaggtcatcg tccagggcaa cgtggaggac gtcgtgacgg ccggagcact
     1321 caaggcctcg gagatctgca acgggatcca ggcgcagtgt gacgccgcgg gcgtcaagta
     1381 acaccagcct cgagcagcac cagtagttga ggcgcggcga tggccgggag gggtgacccg
     1441 cccggccatt gccgcgcatg ctgagcactt ccgttccacc tgcggccaca ctgtgggtca
     1501 cactttgaga agaggaccat ccatggcgaa cccgatgctc gaggtcaagg gcctcaacaa
     1561 gagctttggg ccggtgcacg tcctgcacga cgtcgacctg tcggtctacc ccggtcaggt
     1621 cacggcgctg gtgggtgaca acggcgccgg gaagtcgacg ctggtcaagt gcatcgccgg
     1681 gatcaaccac atcgacagcg gcgaggtcct cttcgagggc aagccggtct ccatcaccga
     1741 tccgcgccat gcggcggagc tcggcatcga gttcgtctac caggacctcg ccctggccga
     1801 caacctcgac atcacccaga acatgttcct gggccgcgag gtccgccggt tcgggttcat
     1861 gcacgacggc gagatggagc gcaaggcccg ggacacgctg agcggcctgt cggtgcgcac
     1921 cgtctcgtcg gtgcgccagg tggtcgcgaa cctctccggt ggtcagcggc agacggtcgc
     1981 gatcgccaag gccgtgctct ggaacagcaa gatcgtgttc ctggacgagc cgaccgccgc
     2041 actcggcgtc gcgcagaccc gccaggtgct cgacctggtc cgccggctgg ccgaccaggg
     2101 ccgcggcgtc gtactgatca gccacaacat gaacgacgtc ctcgaggtcg ccgaccgcgt
     2161 ggtcgccctc tacctgggtc gggtcgcggc cgaggtcgag tcgaagaaca gcagcgtcac
     2221 gcagatcgtc gagctgatca ccagcgggcg aagcggtgac ctcggcctca cccccgccgc
     2281 ggcgaacgag agcatctgag atgagcgagc agaccaccga ccagccgtcc accggcgcca
     2341 cccctgcccc caagggcacc tcgggcgagc gggccagcag cttctccctc gacgtcgacc
     2401 gccgcaacat ccccaccgcg ttccgcgagt acgtcggtcg gctccgttcc ggcgagcccg
     2461 gcaccctccc ggccgtcctc ggcatcctgg ttctgggcat catgttcagc ttcgtcagct
     2521 cccgcttcct cagcagcaac aacatcggca a
//
LOCUS       DASYFY010000198         1796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1853222, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000198 DASYFY010000000
VERSION     DASYFY010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1853222"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VGN19_03735"
     CDS             complement(<1..205)
                     /locus_tag="VGN19_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195027.1"
                     /translation="MSPYRPDESSAGIWFWIALIAIINATWISMDLWLRAHNHEYLTT
                     EFKEGLRKPLWGPLIVGLLAFTVA"
     gene            complement(202..477)
                     /locus_tag="VGN19_03740"
     CDS             complement(202..477)
                     /locus_tag="VGN19_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195028.1"
                     /translation="MITQRTQEMQVRVERTADGRGLVEVNGVDVTRGVTGASMELAPN
                     KPTRVWLSMAVVDGAQFSGSAHVGVATPTAELLIKLGWTPPTEEAAQ"
     gene            complement(474..704)
                     /locus_tag="VGN19_03745"
     CDS             complement(474..704)
                     /locus_tag="VGN19_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195029.1"
                     /translation="MTLAIAHDRHPSTQHFADLFDYEHLPAPLQGVSAKCHTLAQSMI
                     DELGDGPELSAGLRSLLQAKDAFVRQSKKDRG"
     gene            complement(701..1054)
                     /locus_tag="VGN19_03750"
     CDS             complement(701..1054)
                     /locus_tag="VGN19_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195030.1"
                     /translation="MSGNVVPLRRGGTHLALRSAAGEKKGQQTYEWVGSWPPPDKLVV
                     IIEKASHQSKVLNPAEQHPDTIPSFVGRPGYDVLEFVLNKLGDMPANPLQTWWAEYVV
                     LAGVRGASTPRKEPS"
     gene            complement(1051..1467)
                     /locus_tag="VGN19_03755"
     CDS             complement(1051..1467)
                     /locus_tag="VGN19_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195031.1"
                     /translation="MIGGVPVTGEAQGISEQEAWRRTRLLMAMVDSGKCKIEDRAVDG
                     VGVAWIRVMDASEIASAALADRDRELAELRAKIAEVEHLVRDAPYFRAETPPALAATL
                     TGHTVGGCECPRCVAIRAGLTALASSGSAPTGQEER"
     gene            complement(1464..>1796)
                     /locus_tag="VGN19_03760"
     CDS             complement(1464..>1796)
                     /locus_tag="VGN19_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195032.1"
                     /translation="RLHHRGDAMTKIVHRAVIHKFPLENEVTVLPWGEVLHVQAQSPG
                     DPMPTVWMRRNPYDLESATDDGSRQTVTIVGTGHEYDEETVGKFHGTAVCANGVFVWH
                     VFVKPGQS"
BASE COUNT          258 a          613 c          619 g          306 t
ORIGIN      
        1 cggcgacggt gaacgccagc agccccacga tgagcggccc ccacagcggc ttgcgcagcc
       61 cctccttgaa ctcggtggtc aggtactcgt ggttgtgcgc gcgcagccac aggtccatcg
      121 agatccaggt ggcgttgatg atcgcgatga gggcgatcca gaaccagatg ccggcgctgg
      181 actcgtccgg gcggtacggg ctcactgggc tgcctcctcg gtcggcggcg tccagcccaa
      241 cttgatgagc agctccgcgg tcggggtggc cacgccgacg tgggcgctgc cggagaactg
      301 ggcgccgtca acgacggcca tgctcagcca caccctggtt ggcttgttcg gggcgagctc
      361 catcgacgcc ccggtgacgc ccctggtgac gtcgacaccg ttgacctcga caaggccccg
      421 cccgtccgcg gtgcgctcga cgcgcacctg catctcctgc gtccgctggg tgatcacccg
      481 cggtccttct tggactgccg cacgaaggcg tccttggcct gcagcagcga gcgcaacccg
      541 gcggacagct ccgggccgtc gccgagctcg tcgatcatcg actgggccag ggtgtggcac
      601 ttcgcgctga caccctgcag cggcgcgggc agatgctcgt agtcgaacag gtcggcgaag
      661 tgctgggtgc tggggtgccg gtcgtgggcg atggcgaggg tcatgacggt tcctttcggg
      721 gggtggaggc gccgcggaca cccgcgagca ccacgtactc cgcccaccac gtctgcaacg
      781 ggttggcggg catgtcgccg agcttgttca gcacgaactc gagcacgtcg tagccgggcc
      841 ggccgacgaa gctggggatg gtgtcggggt gctgctcggc ggggttgagc accttcgact
      901 ggtggctggc cttctcgatg atgacgacca gcttgtccgg cggcggccag gacccgaccc
      961 actcgtaggt ctgctggccc ttcttctccc cggccgcgga gcgcagcgcc aggtgggtgc
     1021 cgccgcggcg cagcgggacg acgttgccac tcatcgttcc tcctgcccgg tcggtgccga
     1081 cccggacgac gcgagagcgg tgagaccagc cctgatggcc acgcagcggg gacactcaca
     1141 gccgccgacc gtgtggcctg tcagcgtggc ggccagcgcg gggggtgttt cggcgcgaaa
     1201 gtacggcgcg tctcggacga ggtgctcgac ctccgcgatc ttcgcccgca actcggccag
     1261 ttcccggtca cggtcagcca gcgcggccga cgcgatctca ctggcatcca tgacgcgaat
     1321 ccaggcaacg ccgacgccat cgacggcccg gtcctcgatc ttgcacttcc cgctgtcgac
     1381 catcgccatg agcagcctcg tgcggcgcca agcttcctgc tcgctgatcc cctgcgcctc
     1441 accggtcacc gggacacctc cgatcatgac tgtcccggct tgacgaacac gtgccagacg
     1501 aacacgccgt tggcgcagac ggcggtgccg tggaacttgc cgacggtctc ctcgtcgtac
     1561 tcgtgaccgg tgccgacgat ggtgacggtc tgacgcgacc cgtcgtcggt ggccgactcc
     1621 aggtcgtagg ggttgcgtcg catccagacc gtcggcatcg ggtcgcctgg gctctgtgcc
     1681 tggacgtgga ggacttcgcc ccacggaagg acggtgacct cgttctccag ggggaacttg
     1741 tggatcactg cgcggtgcac gatcttggtc atggcatctc ctcgatgatg aagtct
//
LOCUS       DASYFY010000199         2245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1013152, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000199 DASYFY010000000
VERSION     DASYFY010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013152"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..981
                     /locus_tag="VGN19_03765"
     CDS             <1..981
                     /locus_tag="VGN19_03765"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEV7195033.1"
                     /translation="PTLRFPDGLARRARSLAAAGVLALVAQQAAVFTTVWITHHRTSA
                     LGAVNVFTYVQAVYLLPYAVLAVPVATSAFPALAHSFATEASTPHEVLDSAAPGTAAR
                     DTLARALQWILLLTAGAAAVLMSVSRPVGAFFAALDRGAHHGGGPALAALPGTLSSYA
                     PGVVGFGTAALLTRALYVRGRPLYAALAVAAGWAIAALAPLLLVPPGSGPGITLGVLG
                     VASTAGMTVSAVLLAVLVGRAWGEEALRGSARTLKTVVVGVAVAIAVGDVLARALGGD
                     SLWASMGAGVVTAVATAAVYGVVVVVADRSVLATVLATVRTRWPASRGAS"
     gene            978..2222
                     /locus_tag="VGN19_03770"
     CDS             978..2222
                     /locus_tag="VGN19_03770"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7195034.1"
                     /translation="MRVVMLLGRSTGGIGTHVAELTAELRLLGDDVVVVTDELTATRF
                     DLAGARRWWPRLRRTSGGSLRETVRNLVRLRQLVRGADLVHAHGHQAGLLATLVSAST
                     GTPVVVSQHNAVLATRHTQQLVSALVQRVVARHAALVTGASTDLVAQASRFGARDSRL
                     APVPSPRVPGLLARPPLTVTGRAELAAELLLKAGVTKGGVAKGGVAKGGVTTGGVTKG
                     AVTKGGTDSVAAYGVGEYGTPRRIVLTVSRIARQKNLETLIAAAALVGEGVSWVVVGD
                     GDDALLSQYRHEAERVSAPVHFVGSVPDPSDWLRAAEVFALPSRWEARALVVQEAMAA
                     GTPVVASATGGLSDLVDGAGILVPVGDAAALARSVRDLLEDSQRRGQLSQLGRDRATS
                     WDDGRSTARRWHQWYSAASSMT"
BASE COUNT          253 a          785 c          851 g          356 t
ORIGIN      
        1 ccgaccctgc gcttccccga cggcctcgcg cgccgggccc gcagcctcgc tgcggcaggc
       61 gtgctcgccc tggtcgcgca gcaggcggca gtgttcacca cggtgtggat cacccaccac
      121 cgcacgagcg ccctaggcgc ggtgaacgtg ttcacgtacg tccaggccgt ctacctgctg
      181 ccgtatgccg tgttggccgt tcccgttgcc acgtccgcct ttcccgcgct tgcccattcg
      241 ttcgccacgg aggcgtccac cccgcacgag gtcctcgaca gcgctgcccc cgggaccgcg
      301 gctcgcgaca cgctcgcccg cgccctccag tggatcctgc tgctgaccgc tggtgccgcc
      361 gctgtgctga tgtccgtgtc ccgcccggtg ggcgcgttct tcgccgctct ggaccggggg
      421 gcccatcacg gcggtgggcc ggccctcgcg gcgctgccgg ggacgttgtc gtcctacgcg
      481 cccggggtcg tggggttcgg gaccgcagcc ctgctcacga gggccctgta cgtgcggggg
      541 cgtccgctgt atgccgcgct cgcggtggcc gcgggctggg ccatcgctgc tctagccccc
      601 cttctcctgg tgccgccagg ctcgggtccc gggatcacgc tgggggtcct cggggtggct
      661 tcgacggctg ggatgaccgt ctcggcagtc ctgctcgcgg tgctggtggg ccgggcctgg
      721 ggcgaagagg cgttacgggg ctctgctcgc acgctgaaga cggtcgtggt cggggtcgcg
      781 gtggccatcg cggtgggcga cgtgctggcc cgagccctgg gcggcgactc gttgtgggcg
      841 tccatgggtg ccggggtggt cacagcggtg gcgaccgcgg cggtctacgg ggtggtggtg
      901 gtcgttgccg accgctccgt cctggcaacg gtcctggcga cggttcggac gagatggccg
      961 gccagccggg gtgcgtcgtg agagtggtca tgctgctcgg gcggagtacc ggtgggatcg
     1021 gcacccacgt cgccgagctc accgctgagc tgcgcctcct gggcgacgac gtcgtcgtgg
     1081 tgaccgacga gctgaccgcc acccggttcg acctggccgg cgctcgacgg tggtggccgc
     1141 ggctgcggcg caccagcggg gggagcctgc gggagaccgt ccgcaacctc gtccggcttc
     1201 gccagctcgt gcgtggcgcg gacctggtgc atgcgcacgg tcaccaggcg ggactgttgg
     1261 cgacgctggt gtccgcctcg acggggaccc ccgtcgtggt gagccagcac aatgcggtgc
     1321 tggccacccg gcatacccag cagctggtct cggcactcgt gcagcgcgtc gtcgcgcggc
     1381 acgcggccct ggtgaccggg gccagcacgg acctcgtggc ccaggccagc cggttcggag
     1441 cgagggactc ccggctcgct ccggtgccct ctccgcgcgt gcctgggctg ctcgcccggc
     1501 ctccgctcac cgtgacgggc cgagccgagc tggccgccga gcttctcctc aaagccggcg
     1561 tcaccaaagg cggcgtcgcc aaaggcggcg tcgccaaagg cggcgtcacc acaggcggcg
     1621 tcaccaaagg cgcggtaacc aaaggcggca cggactcggt agcggcatac ggggtgggcg
     1681 aatacgggac ccccaggcgg atcgtgctca ccgtgtcgcg gatcgcgcgc cagaagaacc
     1741 tcgagacgct catcgccgcc gccgccttgg tcggcgaggg ggtcagctgg gtggtcgtcg
     1801 gcgatggtga cgatgccctg ctgtcccagt accgccacga ggccgagcgg gtgagcgcgc
     1861 cggtgcactt cgtgggctcg gtcccggacc cgtcggactg gctcagggcg gcggaggtct
     1921 tcgcgttgcc cagccggtgg gaggcgcggg cgctcgtggt ccaggaggcc atggcggccg
     1981 gaacaccggt ggtggcatcc gcaaccgggg gcctgtccga cctcgtcgac ggcgcaggca
     2041 tcctggtgcc cgtcggcgac gccgctgctc tcgcgcggtc ggtgcgagac ctcctcgagg
     2101 actcccagcg ccgagggcag ctgtctcagc tgggtcgcga ccgggcaaca tcgtgggatg
     2161 acggcaggtc gacggcgcgt cgctggcacc agtggtattc ggcagcctca tccatgacgt
     2221 agtgttgaag cccgtggtgg tgcag
//
LOCUS       DASYFY010000200         4268 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1329604, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000200 DASYFY010000000
VERSION     DASYFY010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4268
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329604"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            15..107
                     /locus_tag="VGN19_03775"
     CDS             15..107
                     /locus_tag="VGN19_03775"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195035.1"
                     /translation="MRVMVEAVELDQAQTVADRLVEVVRARLTL"
     gene            186..608
                     /locus_tag="VGN19_03780"
     CDS             186..608
                     /locus_tag="VGN19_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ohr family peroxiredoxin"
                     /protein_id="HEV7195036.1"
                     /translation="MPHESLTEPLYSSAATAQGGRAGHVTSEDGVVHLKLGKPGSKAN
                     PKANPETLFAAGYAACFGNALNSVATALGLDTSDSTVTATVTLGKTDTGVGLAVALVA
                     QVPGLDRGTAQQLVDAAHERCPYSKATRGNIDVTVTLG"
     gene            complement(637..1152)
                     /locus_tag="VGN19_03785"
     CDS             complement(637..1152)
                     /locus_tag="VGN19_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEV7195037.1"
                     /translation="MNENMTAAEGFDDLLAANRDFATRFTLGGFDGIAHRGVAVVTCM
                     DSRIDPLGMLGLSPGDAKIFRNPGGRVTSAALEALVLGVHLLNVQRILIVPHTRCAMT
                     VYTEQELRAKIGELAGQDASWQGFHVIADQQVALQQDVAAVRAHPLIPDTVAVGGFLY
                     DVDTGLLGQLI"
     gene            complement(1149..2828)
                     /locus_tag="VGN19_03790"
     CDS             complement(1149..2828)
                     /locus_tag="VGN19_03790"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HEV7195038.1"
                     /translation="MTDFDYEDLLPIGPDTTEYRLLSAEGVSTLEGPDGRGFLQVEPE
                     ALRLLTETAMHDIAHYLRPAHLAQLRRIVDDPDASNNDRFVALDLLKNANIAAGGVLP
                     MCQDTGTAIVMGKRGQHVLSSGPDERAIAQGVYDAYTRLNLRYSQLAPLTTWEEKNTG
                     SNLPAQIELYADTAAGHETAYKFLFMAKGGGSANKSFLYQETKAILNPERMLAFLDEK
                     LRALGTSACPPYHLAIVIGGTSAEFALKTAKYASAKYLDDLPREGDAATARGFRDTEL
                     EEQVLELTRGFGIGAQFGGKYFCHDVRVVRLPRHGASLPVAIAVSCSADRQALGKITP
                     EGVFLEVLERDPARFLPDTTEAHLDAEADAVVTIDLNRPMDEIRAELTKYPVKTRLSL
                     HGPLVVARDIAHAKIRERLEAGEGMPQYLKDHAVYYAGPAKTPEGYASGSFGPTTAGR
                     MDSYVDEFQAAGGSMVMLAKGNRSAQVTKACADHGGFYLGSIGGPAARLAQDCIKSVE
                     VLEYPELGMEAVWKIEVEDFPAFIVVDDKGHDFFASTIKPMATTIPRRPGL"
     gene            complement(2889..3806)
                     /locus_tag="VGN19_03795"
     CDS             complement(2889..3806)
                     /locus_tag="VGN19_03795"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEV7195039.1"
                     /translation="MSERLLVVGEALVDIVTDATGQRAEHVGGSPANVAVGLARLGHP
                     VDFACCLGHDPRGTRISNYLSSHGVTVLPESFGDQPTSTALAMVDDTGAATYEFDLHW
                     NLPALSVDPQTVHVHTGSIGAVLAPGATSVKAALRAVRERGTVSYDPNIRPGIMGDLA
                     AVRERVEELVALSDVVKASEDDLALLYAESSPEEVMADWVRLGAALVVVTLGADGVIF
                     RVSADQTVGSAPTRADHVVDTVGAGDSFMAGLVSGLMVGRLIGGPAARARLREATLVQ
                     VEPAVTRGLSTSAVTVGKSGAYAPSLDEL"
     gene            complement(3803..>4268)
                     /locus_tag="VGN19_03800"
     CDS             complement(3803..>4268)
                     /locus_tag="VGN19_03800"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HEV7195040.1"
                     /translation="LRFISDGDVAGAIMAARDETGIDLLLGVGGTPEGIITACAIKCL
                     GGVIQGRLWPQDDDERQRAIDAGHDLDRVLSTDDLVSSENCFFVATGITDGELLKGVR
                     YRAGGITTHSLVMRSKSGTIRLIESHHQLSKLRAYSSIDFDHAGQPQPGILA"
BASE COUNT          651 a         1446 c         1472 g          699 t
ORIGIN      
        1 gcaccgaacc gctggtgcgg gtcatggtcg aggcggtcga gctcgaccag gcacagactg
       61 tcgctgaccg cctcgtcgag gtcgtccgtg cgcggctgac gctctagtcc ttcggatagt
      121 cctggaatct gacggccagt gacggggttg aggtcgatgt acctacccac gacaaaggaa
      181 gtcctatgcc gcacgagtcc ctgaccgaac cgctgtactc gagtgccgcc accgcccagg
      241 gaggcagggc cggccacgtc acgagcgagg acggcgtcgt ccacctcaag ctgggcaagc
      301 ccggcagcaa ggcgaacccc aaggccaacc cggagacgct gttcgccgca ggctacgccg
      361 cctgtttcgg caacgccctc aactcggtgg ccaccgcgct gggcctggac acctcggact
      421 cgaccgtcac cgcgacggtc acgctcggga agaccgacac cggcgtcggc ctcgccgtgg
      481 cgctcgtggc gcaggtgccc ggcctcgatc gcggcaccgc gcagcagctg gtcgatgcag
      541 cgcacgagcg gtgcccctac tccaaggcca cgcgcggcaa catcgacgtc accgtgacgc
      601 tgggctgagt gccgctggat cgacgctggg ctggggttag atgagctgcc cgagcaagcc
      661 ggtgtccacg tcgtagagga acccgccgac cgccaccgtg tcaggaatca gcgggtgcgc
      721 acggaccgcc gccacgtcct gctgcaacgc cacctgctgg tcggcgatga cgtggaagcc
      781 ctgccaggag gcgtcctgac cggcgagctc gccgatcttg gcgcggagct cctgctcggt
      841 gtacacggtc atcgcacacc tcgtgtgcgg gacgatcagg atccgctgga cattgagcag
      901 gtgcacgccg aggaccagcg cctccagcgc ggccgacgtg acccggcccc cggggttgcg
      961 gaagatcttg gcgtcaccgg gcgataggcc cagcatgccc agtgggtcga tacgcgagtc
     1021 catgcaggtc accacggcga ctccgcggtg cgcgatgccg tcgaacccgc ccagcgtgaa
     1081 gcgggtggcg aagtcccggt ttgcggcgag caggtcgtcg aaaccctctg ccgcagtcat
     1141 gttctcgttc acagacctgg tctcctcggg atagtcgtgg ccatgggctt gatggtcgag
     1201 gcgaagaagt cgtggccctt gtcgtccacg acgatgaagg cggggaagtc ctcgacctcg
     1261 atcttccaga cggcttccat ccccagctcg gggtactcga gcacctcgac cgacttgatg
     1321 cagtcctggg ccaggcgcgc ggccgggcca ccgatcgagc cgaggtagaa gccgccgtgg
     1381 tccgcgcagg ccttggtcac ctgcgcggag cggttgccct tggcgagcat gaccatggag
     1441 ccacccgcgg cctggaactc gtcgacgtag gagtccattc gccctgctgt ggtcggcccg
     1501 aacgacccgc tcgcataacc ctcaggggtc ttcgccggtc cggcgtagta gacggcgtga
     1561 tccttgaggt actgcggcat accctcgccg gcctcgagcc gctccctgat cttggcgtgc
     1621 gcgatgtcac gcgccaccac gagcggccca tgcagcgaaa gccgtgtctt gacagggtat
     1681 ttcgtcagct cggcacggat ctcgtccatg ggtcggttga ggtcgatggt gacgacggca
     1741 tcggcctctg cgtcgagatg cgcctcggtg gtgtctggga ggaaccgcgc cgggtcccgc
     1801 tcgagcacct cgaggaacac cccctcgggg gtgatcttgc cgagcgcctg gcggtcagcc
     1861 gagcacgaca ccgcgatcgc cacgggcagg gacgcgccat gccgaggcaa ccggaccacg
     1921 cgcacgtcgt ggcagaagta cttgccgccg aactgggcgc cgatcccgaa gccgcgggtc
     1981 agctcgagca cctgctcctc gagctcggtg tctctgaacc cccgagccgt ggccgcgtcc
     2041 ccttcgcgag gaaggtcgtc gaggtacttg gcggacgcgt acttggctgt cttcagggcg
     2101 aactcggcac tcgtcccgcc gatgacgatg gccaggtggt acggcgggca agcgctggtg
     2161 ccgagggcgc ggagcttctc gtcgaggaac gccagcatgc gttcggggtt caggatcgcc
     2221 ttcgtctcct ggtacaggaa cgacttgttg gcactgccgc cgcccttggc catgaacaag
     2281 aacttgtatg ccgtctcgtg tccggcggcg gtgtccgcgt acagctcgat ctgggccggg
     2341 aggttggagc cggtgttctt ctcctcccag gtcgtcagtg gcgcgagctg ggagtagcgc
     2401 aagttcaagc gggtgtaggc gtcgtacacc ccctgcgcga tggcccgttc gtcggggccg
     2461 gagctgagga cgtgttggcc tcgcttgccc atgacgatgg cggtgccggt gtcctggcac
     2521 atcggcagga cgcccccggc cgcgatgttg gcgttcttca gcaggtccag cgccacgaac
     2581 cggtcgttgt tggaggcgtc cgggtcgtcg acgatgcggc gtagctgagc caggtgcgcc
     2641 ggccgcaggt agtgggcgat gtcatgcatc gccgtctcgg tcagcaggcg cagggcttcg
     2701 ggctcgacct gcaggaaccc ccgcccgtcc ggtccctcga gcgtggagac gccttcggcg
     2761 ctgagcagcc ggtactcggt ggtgtccggg ccgatgggca gcaggtcctc gtagtcgaag
     2821 tcggtcatgg actcctcgta ctccttcgtt cgtccggtcg ttagtgcggt cgttcgcgag
     2881 gtgacgatct acagctcgtc gaggctcggc gcgtaggcgc ccgacttgcc gaccgtcacg
     2941 gcgctggtgg acaggccacg ggtcacggct ggctcgacct gcaccagtgt cgcctcccgc
     3001 agtcgggcac gtgccgccgg gccaccgatc agccggccga ccatgaggcc ggacacgagt
     3061 ccggccatga aggagtcgcc cgcgccgacg gtgtcgacga cgtgatcagc cctggtcggg
     3121 gcactgccca cggtctggtc cgcgctgact cggaagatca cgccgtcggc tcccagcgtc
     3181 acgacgacca gggcagcgcc cagtcgcacc cagtcggcca tgacctcctc cggcgagctc
     3241 tcggcataca gcagggcaag gtcgtcctcg ctcgccttga ccacatcact gagcgcgacg
     3301 agctcctcga cgcgctcgcg gacggctgcc aggtcaccca tgatcccggg tcggatgttc
     3361 gggtcgtagg agacggttcc tcgctcacgc accgcgcgca gggccgcctt cacgctggtc
     3421 gcgccgggcg ccaggacagc accgatcgac ccggtgtgca cgtggacggt ctgcgggtcc
     3481 acgctcagtg cgggcaggtt ccagtgcagg tcgaactcgt aggtcgccgc gccggtgtcg
     3541 tcgaccatgg ccagcgccgt cgaggtcggc tggtcgccga agctctccgg gagcaccgtg
     3601 acaccgtgac tgctcaggta gttcgagatc cgcgtcccgc gcgggtcgtg tcccaggcag
     3661 caggcgaagt ccaccgggtg acccagccgt gccaggccga cggcgacatt cgccgggctc
     3721 ccgcccacgt gctcggcgcg ctggcccgtc gcgtccgtga cgatgtcgac cagcgcctcg
     3781 ccgacgacca gaagccgctc gctcacgcca ggatgcctgg ctgaggctgg ccggcgtggt
     3841 cgaagtcgat ggaggagtag gcccggagct ttgacagctg gtggtggctc tcgatgagcc
     3901 ggatggtgcc cgacttcgag cgcatgacca gggagtgcgt cgtgatgccg ccggcgcggt
     3961 agcggacgcc cttgagcagc tccccatcgg tgatgccggt agccacgaag aagcagttct
     4021 cactgctcac caggtcgtcc gtcgagagaa cccggtcgag gtcatgaccc gcgtcgatgg
     4081 cccgctgtcg ctcgtcgtcg tcctgcggcc acaagcgccc ctggatgacg ccaccgaggc
     4141 acttgatggc gcaggcggtg atgatgcctt cgggcgtgcc tcccaccccg agcaacaggt
     4201 cgatgccggt ctcgtcccga gccgccatga tcgcgccggc gacgtccccg tcggagatga
     4261 agcgcagc
//
LOCUS       DASYFY010000201         7396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_382949, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000201 DASYFY010000000
VERSION     DASYFY010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7396
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382949"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VGN19_03805"
     CDS             complement(<1..769)
                     /locus_tag="VGN19_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEV7195041.1"
                     /translation="MTQHHDQRDQTPMTQLPVVVEREGAVATVRFNRPEAMNALDIAT
                     KDALLTALGAVAEDPEVRCVVLTGSGRAFCVGQDLREHVGLLQRDDPSLWETVPKHYN
                     PIVELLATMNKPVVAALNGVAAGAGAAFAMAADIRVMVDSAGMNLAFAGIALSCDSGS
                     SWWLSRLVGPAKAKELLLLPRTVPAAECLDLGLVTSVVTPDELEAAVRELATTLAAGP
                     TLAYGSIRRAVAFSSGPDLSASLAQEAHYMALTGGSAD"
     gene            complement(777..1556)
                     /locus_tag="VGN19_03810"
     CDS             complement(777..1556)
                     /locus_tag="VGN19_03810"
                     /inference="COORDINATES: protein motif:HMM:NF019829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaX family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HEV7195042.1"
                     /translation="MHARSALFDLYGDHLLDRDGWAPIAACVGLLGSLGISAPAVRTA
                     VSRMVREGWLEPVERDVRGYAVSARGRERLREAHARIYRTDEVAWDGRWHLVVVDRVP
                     DRNARARGAQALAYLGYGQLAADTWIAPRPSRELGTALGPTGMAWHGFTGTVDGDTRE
                     VVSGVWDLSSLARAYRTFTETMAPAEPASTPEDAFVARTELVHEWRLFLFSDPGLPDE
                     VLPHEWPGRAAARAFDARAHALLPAARAWVEFWLAGRGDRP"
     gene            1723..1896
                     /locus_tag="VGN19_03815"
     CDS             1723..1896
                     /locus_tag="VGN19_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007923758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3117 domain-containing protein"
                     /protein_id="HEV7195043.1"
                     /translation="MAAMKPRTGDGPLEVTKEGRGIVLRMPLEGGGRLVVEMTPDEVR
                     ALGEAINNCEGLK"
     gene            2003..3544
                     /locus_tag="VGN19_03820"
     CDS             2003..3544
                     /locus_tag="VGN19_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HEV7195044.1"
                     /translation="MPAPDLLTPLTSDWMVRPTPLADVLVDLEPDDLVLALPVTAGVL
                     DADADASLSPNSTTGALALVGLNSAEVAAAHEPDSAAGAVTRLPLVPGERAARLVLLV
                     GVGNGSEGDLRSAGAAVGRASRGHAHLVTTIGADRHADVQGAFAEGLALGGYSAPQWL
                     SRPGRPTSPVGSVVLCGVHDEEATFHAFVRARATMLARNLAVTPSNVKDPAWLASQAR
                     TVGRRAGLEVKVWTTRELRAEGFGGLLAVGAGSDSPPRLVQLDYAPVGATAATPRVVL
                     VGKGITFDTGGLDLKPAEGMIAMKTDMSGAAIVLAVLAACQDLGVGVRVTGLLALAEN
                     ALSGSSFRPSDVITQYGGTTVEIGNTDAEGRLVLADALAYADLTLDPAYLVDIATLTG
                     HARVAMGRSMAPLYATDDALRGALERSAEATGEPVWSFPLVEDYRADLDSEIADINHI
                     AGIGGAGGSITAALFLREFAGSRRWAHLDIAGVGRSDVDRGLLTKGGTGFGARLLLHW
                     LENMA"
     gene            3541..3897
                     /locus_tag="VGN19_03825"
     CDS             3541..3897
                     /locus_tag="VGN19_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195045.1"
                     /translation="MNAGYGLSVRWSLENAPQDVAVKLRDYVVGTSMARFMFLDGLAF
                     KTWRMVEGGWFEGTYVFDQAVYRDDFAAEFNETAATAPGSVIIGSPPISVEAFEVVAI
                     AEGPAKFRRGPGPGTA"
     gene            complement(3939..4571)
                     /locus_tag="VGN19_03830"
     CDS             complement(3939..4571)
                     /locus_tag="VGN19_03830"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEV7195046.1"
                     /translation="MSAQKPASWAYAEEFVTENEVIEQARRRGEELGAVPVGNGAGVL
                     LRLLAAAVKAKSVVEIGTGAGTSGLWMLQGMPDDGILTTIDVEPEHQSSAKKAYAEAG
                     IAHQRTRVISGRALDVLPRMTDAAYDMVVIDADKAEYPSYVDHAIRLLRSGGVLVLDN
                     MLWHDKVADPAARDAVTVVLRDLGKRLRDDERLVPALLPVGDGVFAAVKR"
     gene            4787..5425
                     /gene="sigE"
                     /locus_tag="VGN19_03835"
     CDS             4787..5425
                     /gene="sigE"
                     /locus_tag="VGN19_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigE"
                     /protein_id="HEV7195047.1"
                     /translation="MDELDPVEQAWVPPTWEEIVEQHSARVYRLAYRLTGNVHDAEDL
                     THDVFIRVFRSLNSYQPGTFEGWLHRITTNVFLDKMRRKQRIRFDALSDESAARLPTR
                     EAGPEATFDATHFDDDVQHALDALSPDFRAAVVLCDIEGLSYEEIAATLGVKLGTVRS
                     RIHRGRAQLREALAHRDPALGRAARDFEPVPAPAPAPKRRLPVLGRAVHGSR"
     gene            5499..6101
                     /locus_tag="VGN19_03840"
     CDS             5499..6101
                     /locus_tag="VGN19_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195048.1"
                     /translation="MTAYADRAMDPIALLLWDRHVVTCACCGAAVAQERRVLMALRAP
                     AATAVPGDLRGMLLALADESAGVRPRGASATSARDDSYREPRHTPALPPIPVAPVPVV
                     DRGMPALHRSARRASVFAGLAAGATAAAAWGVAVTAAGLPVHDPAVIPGVLRGTPPVT
                     SPFAPAAFMVAKLGTGSGAPQPGIRPTVGRVRLRSAQSTP"
     gene            6098..>7396
                     /locus_tag="VGN19_03845"
     CDS             6098..>7396
                     /locus_tag="VGN19_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEV7195049.1"
                     /translation="MSDERDPAGDAFGEPQQPGQHGQPDHGIPESGGEPTGPVTFDHT
                     QELSAPVPSAHPGPEQGPQPNPEQHAAPPGEPPAPFGPYGAQPMPYGAQPVPYGAQPL
                     PWGTQPGPPPGGPPPTGPAGQRPGPGWGAVIAIAAIASLCAALIGGLFGGWVGATHQV
                     DFTGGASTIPTAGTGATARPSGSIASIAAMSLPSVVTIKVSGADGTGTGSGFVIDHAG
                     HILTNNHVVAGAASGGSIVIELSNGSQIHATIAGRDGSYDLAVLNTGRTDLTPLTMGS
                     SKDVVVGDQVIAVGAPLGLESSVTSGLVRALNRPVSPGGNGDQQSFINAIQTDAAINP
                     GNSGGPLLDMQGHVVGVNSAIARVPGTTDTQSGNIGVGFSIPSDQAVKTAEQLIRTGK
                     AVHPVIGVVLDRQYTGAGVRILSQASASSGAPVDPNGPAGK"
BASE COUNT         1067 a         2676 c         2579 g         1074 t
ORIGIN      
        1 ggtcggcgct gcctcccgtc agggccatgt agtgggcctc ctgcgccagg gacgcgctca
       61 ggtcaggccc tgagctgaac gcgaccgcgc gacggatcga cccgtacgcg agggtgggtc
      121 cagccgccag ggtggtcgcg agctcgcgga ccgccgcctc cagctcgtcc ggcgtcacca
      181 cgctggtcac caggccaagg tcgaggcatt cagcggccgg gacggtgcgg gggagcagca
      241 gcagctcctt ggccttcgcg ggtcccacca gacgcgacag ccaccacgag gaaccggagt
      301 cacacgacag cgcgatgccg gcgaacgcga ggttcatccc ggcggagtcg accatcaccc
      361 ggatgtccgc ggccatcgcg aaggccgcgc ccgcgccggc ggcgaccccg ttgagcgccg
      421 cgacgacggg cttgttcatg gtggccagca gctcgacgat agggttgtag tgcttcggca
      481 cggtctccca cagcgaggga tcgtcgcgtt gcagtagtcc cacgtgttcg cggaggtcct
      541 gaccgacgca gaaggcgcgt cctgagcccg tgaggaccac acagcgcact tccgggtcct
      601 cggctaccgc gccgagcgct gtcaacagtg cgtccttggt ggcgatatcg agggcgttca
      661 tggcctcggg ccggttgaag cgcaccgtgg ccacggcccc ttcccgctcg acgacgacgg
      721 gcaactgggt catgggggtc tggtccctct ggtcgtggtg ttgggtcatc gggccatcat
      781 ggtcgatcgc ctctgcctgc cagccagaac tccacccagg cgcgcgccgc cgggagcagc
      841 gcgtgggcgc gagcatcgaa cgcccgggcc gccgcacgcc ccggccattc gtgcggcagc
      901 acctcgtccg gcaggcccgg gtcgctgaac aggaacagcc gccattcgtg cacgagctcg
      961 gtccgcgcca cgaacgcgtc ctccggggtg ctggcgggtt cagccggagc catggtctcc
     1021 gtgaaggtgc gatacgcgcg ggccagtgag ctcaggtccc acacgccgga gacgacctcg
     1081 cgggtgtccc cgtcgacggt gccggtgaag ccgtgccagg ccatcccggt cgggcccagc
     1141 gccgtcccga gctcgcggct gggtcgtggt gcgatccagg tgtctgcggc cagctggccg
     1201 taaccgagat aggccagggc ctgcgccccc cgcgcacgag cattccggtc cggcacccga
     1261 tccaccacga ccaggtgcca acggccgtcc caggccacct cgtccgtgcg atagatccgg
     1321 gcatgcgcct cgcgcagccg ttcgcgcccg cgggcggaga cggcataccc gcgcacgtcg
     1381 cgctccacgg gctccagcca gccctcgcgg accatccggg acacagcggt ccgcaccgcg
     1441 ggggccgaga tcccgagcga gcccagcagt cccacgcacg cggcgatcgg ggcccacccg
     1501 tcgcggtcga gcaggtggtc gccatagagg tcgaagaggg ctgagcgggc atgcacggat
     1561 gcagtctcac cgatggggcc tcgagacggg gggagggtgg atttcgcctg cgagcgtgtt
     1621 cacgggataa tggagtaaat ctggcgcgca tggggagcac aaacacgggc gtggacccgc
     1681 gtgccggcag gacaccacgc ctgacaacga agggacgcac ccatggcggc gatgaagccg
     1741 aggactggcg atggcccgct cgaggtgacc aaggaaggcc gcggcatcgt cctgcggatg
     1801 ccgctggagg gcggcggtcg cctggtggtc gagatgaccc ccgacgaggt gcgcgcccta
     1861 ggcgaggcca tcaacaactg cgaaggcctc aagtgaccca ctgagacctc cgaccagacc
     1921 ccctccggca gccaccggtg ggggtctggt cgtgtgtggg gggtatgccg cgcccggcgg
     1981 gctgctcgat agggtcgagt ccgtgcctgc ccccgacctc ctgacccccc tgaccagcga
     2041 ctggatggtg cgacccaccc ccctcgccga cgtgctggtc gacctcgagc ccgacgatct
     2101 cgtgctagcc ctccccgtga cggccggtgt gctcgacgct gacgctgacg cgtccctgtc
     2161 cccgaacagc acgacggggg cgctggccct ggtcggcctc aactccgcag aggtggccgc
     2221 cgcgcacgag ccggactccg ccgctggcgc ggtgacgcgg ctacctctcg tgccgggtga
     2281 gcgggccgcc cggctggtgc tgctggtcgg ggtcggcaac ggctccgagg gtgacctgcg
     2341 gtcagccggg gccgccgtgg gtcgcgcatc gcgcgggcat gcccacctgg tgacgacgat
     2401 cggcgccgac cgccacgcgg acgttcaggg tgctttcgcc gaggggcttg ccctgggtgg
     2461 ctactcggct ccgcagtggc tgtctcgccc cggccgaccc acctcgccgg tggggtcggt
     2521 cgtgttgtgt ggcgtgcacg acgaggaggc gactttccac gcgttcgtcc gggcccgggc
     2581 caccatgctc gcccgcaacc ttgcggtcac cccctcgaac gtcaaggacc ctgcttggct
     2641 ggcgtcgcag gcgcgcaccg tcggccgtcg cgcgggtctg gaggtcaagg tctggaccac
     2701 gcgagagctg cgcgccgagg gcttcggcgg cctgctcgct gtcggagccg ggtcggacag
     2761 cccgccgcgg ctggtccagc tcgactacgc cccggtcggt gccaccgccg cgacgcctcg
     2821 ggtggtgctg gtcggcaagg gcatcacctt cgacaccggc ggcctggacc tcaagccagc
     2881 cgagggcatg atcgccatga agaccgacat gagcggggcc gccatcgtgc tggcagtcct
     2941 ggccgcgtgc caggacctgg gcgttggggt ccgggtgacg ggtctgttgg cgctcgcaga
     3001 gaacgcgctg agcgggtcct cgttccgccc ctcggacgtc atcacccagt acggcggaac
     3061 cacggtggag atcggcaaca cggatgcgga aggccggctc gtgctggccg atgccctggc
     3121 gtatgccgat ctcaccctcg atcccgccta cctggtcgac atcgccacgc tgaccggtca
     3181 tgccagggtg gcgatgggcc ggagcatggc cccgctgtac gcgaccgacg acgccctgcg
     3241 gggggcgttg gaacggtccg ccgaggccac gggcgagccc gtctggtcct tcccgctggt
     3301 cgaggactat cgggccgacc tcgacagtga gatcgccgac atcaaccaca tcgcgggcat
     3361 cggaggcgcc ggcggctcga tcacggcagc attgttcctc cgcgagtttg cgggctcacg
     3421 tcggtgggca catctcgata tcgcgggggt gggacgctcc gacgtggacc gaggactcct
     3481 caccaagggc ggcacgggct tcggagcccg gctgctcctt cactggttgg agaacatggc
     3541 atgaatgccg gatacgggct ctcggtgcgt tggtcgctcg agaacgcccc acaggacgtc
     3601 gcggtcaaac tgcgcgacta cgtcgtcggc acctcgatgg ccaggttcat gtttctggac
     3661 ggtttggcct tcaagacctg gcgcatggtc gagggcggct ggttcgaggg aacgtacgtc
     3721 ttcgaccagg ccgtctatcg cgacgacttc gcggcggagt tcaacgagac cgcggctacg
     3781 gcaccgggca gcgtcatcat cgggtcgccg ccgatctcgg tcgaggcttt cgaggtcgtg
     3841 gccatcgctg agggtcccgc caagttccgt cgcggccctg gtccaggcac ggcctgagcg
     3901 tcagtgcacg ccctgagcgt cagcgcacgg cctgagcgtc agcgcttgac cgcggcgaag
     3961 actccgtcgc ccaccggcag cagcgccggg acaaggcgct cgtcgtcccg cagccgcttg
     4021 cccagatcgc gcagcacgac ggtcacggcg tctcgcgcgg ccgggtcggc gaccttgtcg
     4081 tgccacaaca tgttgtcgag cacgagcacg ccgccggagc gcagcagccg gatcgcgtgg
     4141 tcgacatagc tcgggtactc ggccttgtcg gcgtcgatga ccaccatgtc gtaggcggca
     4201 tcggtcatcc tcgggaggac gtcgagggct cgcccgctga tgacccgggt ccgctggtgg
     4261 gcgatcccgg cctccgcgta ggccttcttc gccgagctct ggtgctcggg ctcgacatcg
     4321 atcgtggtca ggatgccgtc gtcaggcatc ccctgcagca tccacagtcc ggaggtgccg
     4381 gccccggtgc cgatctcgac gaccgacttg gccttgacgg ccgcagccag cagccgcagc
     4441 agcacgcccg cgccgttgcc gacgggcacc gccccgagct cctccccccg gcgccgcgct
     4501 tgctcgatca cctcgttctc ggtgacgaac tcctcggcat acgcccagct ggcgggcttc
     4561 tgtgcactca tgcggcaaac cctactgccg gagcccgccc gaactgggcg ggagccgcat
     4621 acccggggaa ggcatacagc gaaccctcag gttgttgggg aaccatgagt ggtgtccggt
     4681 cgtctggacg gatgcatgca ccgcgtcgag cccaccgcgc ccggcgcgcc gagcggaggt
     4741 gaggcacgtg accgcgaccg agaccttcgg cacgccagtc gaccacgtgg acgagttgga
     4801 cccggtcgag caggcctggg ttcccccgac ctgggaagag atcgtcgagc agcactcggc
     4861 tcgggtctat cggctggcgt accgcctgac cggcaacgtc catgacgccg aggacctcac
     4921 ccatgacgtg ttcatcaggg tcttccgctc gttgaactcc taccagccgg gtacgttcga
     4981 gggctggctg caccggatca ccacgaacgt cttcctcgac aagatgcgcc gcaagcagcg
     5041 gatccggttc gacgcgctgt ccgacgagtc ggcggcccgc ctccccaccc gtgaggccgg
     5101 ccctgaggcg acgttcgacg cgacccactt cgatgatgac gtccagcacg cgctggacgc
     5161 gctttcgccg gactttcgcg ccgccgtggt cctgtgcgac atcgaagggc tgtcctacga
     5221 ggagatcgcg gccaccttgg gcgtcaagct cgggacggtc cgctcccgga tccaccgcgg
     5281 ccgggcccag ctgcgcgagg ccctggcgca ccgagacccg gcgcttggcc gggcagcccg
     5341 agacttcgag ccggtccccg cgccggcgcc cgcgcccaag cgccgtctgc cggtgttggg
     5401 gcgggcggtg cacgggtccc ggtgatcccg tgaaccggcc ggggtgggcc acgctgccga
     5461 tcgcccatcg cgggcggggg cgatgtctcg aggctgaggt gacggcgtac gcggaccgtg
     5521 ccatggaccc catcgccctg ctcctgtggg accggcacgt ggtgacctgc gcctgctgcg
     5581 gtgccgcggt ggcgcaggag cgccgcgtgc tcatggcact gcgtgcccca gcagccactg
     5641 ccgtgccggg cgacctgcgt ggcatgctgc tggcgctcgc cgacgagtcc gctggcgtac
     5701 gtcctcgagg cgcctccgca acctcggccc gtgacgactc ctatcgcgaa cctcgccata
     5761 cgcccgcact tccaccgatc ccggtcgctc cggtcccggt ggtggaccga ggtatgccgg
     5821 cgctgcaccg ctccgcgcgg cgggccagcg tcttcgcggg ccttgccgcc ggtgcgaccg
     5881 ccgcggcggc ctggggggtc gcggtgactg ctgccggcct gccagtgcac gaccccgccg
     5941 tcatccccgg agttctgagg gggacaccgc cggtgacctc gccgttcgcc ccagcggcct
     6001 tcatggtcgc caagctcggc accggttcgg gcgcgcccca gccggggatc cgacccaccg
     6061 tcggccgggt gcgcctccgt tcggcacaat cgactccatg agcgacgagc gcgaccccgc
     6121 tggcgacgcc tttggcgagc cccagcagcc cggtcagcac ggtcagcccg accacggcat
     6181 acccgagagt gggggcgagc cgaccggacc ggtgacgttc gaccacaccc aggagctgtc
     6241 ggctccggtg ccctcggcgc accccggacc tgagcaaggc ccgcaaccca accccgaaca
     6301 gcacgctgcg ccccccggcg agccaccggc accgttcggc ccgtatggcg cccagcccat
     6361 gccgtacggc gcgcagcccg tgccgtacgg cgcgcaacca ttgccctggg gcactcagcc
     6421 cgggccgccg ccgggtggtc caccgccgac cggtcccgcc ggacagcgcc cgggaccagg
     6481 ctggggggct gtcatcgcca tcgccgccat cgcctccctg tgcgccgccc tgatcggcgg
     6541 cctgttcggc ggctgggtgg gggccaccca ccaggtcgac ttcaccggag gagcttcgac
     6601 catcccgacc gccgggaccg gagcaacggc gcgcccgtcg ggatccatcg cgtccatcgc
     6661 cgcgatgtcc ctgcccagtg ttgtcaccat caaggtcagc ggagctgacg gcaccggaac
     6721 aggttcgggc ttcgtcatcg accacgcggg ccacatcctg accaacaacc acgtcgttgc
     6781 gggggcagcc tccggaggct cgatcgtcat cgagctgagc aacggcagcc agatccacgc
     6841 gaccatcgcc ggacgggacg ggtcgtacga cctggccgtg ctcaacacgg ggcggaccga
     6901 cctcacgccc ttgaccatgg gctcgtccaa ggacgtcgtc gtcggcgacc aggtgatcgc
     6961 cgtcggtgca ccgctgggcc tcgagtcgag tgtgacctcc ggactcgtcc gcgcgctcaa
     7021 ccggccggtc agcccagggg gcaacggcga ccagcagtcg ttcatcaacg cgatccagac
     7081 cgacgccgcc atcaaccccg gcaacagtgg cggcccgctg ctggacatgc agggtcatgt
     7141 cgtcggcgtg aactcggcca tcgcccgcgt ccccgggacg accgacacgc agtccggcaa
     7201 catcggggtg gggttctcga tccccagcga ccaggcggtc aagacggccg agcagctgat
     7261 ccggaccggc aaggcggtcc acccggtcat cggcgtcgtc ctcgatcgcc agtacaccgg
     7321 cgccggcgtg cggatcctga gccaggcgtc ggcctccagt ggcgcaccgg tggaccccaa
     7381 cggccccgcg gggaag
//
LOCUS       DASYFY010000202         1725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_750782, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000202 DASYFY010000000
VERSION     DASYFY010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_750782"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1709
                     /gene="pepN"
                     /locus_tag="VGN19_03850"
     CDS             <1..1709
                     /gene="pepN"
                     /locus_tag="VGN19_03850"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HEV7195050.1"
                     /translation="VLAWRAGTILHEMAHMWFGDLVTMRWWDDLWLNESFATYMGNDA
                     QAEATKYTSAWVDFANGDKSWAALQDQLPTTHPIAADVPDVSTGRLNFDGISYAKGAS
                     VLRQLVAWVGQDAFFGGVRDYFTEHQWGNATLRDFLAPLERHSGRDLAAWTREWLQTA
                     GMNVLHAEVATTADGMIDSCTIVQSAANPRFSTLRSHRVGVGLYDLDDDGRLVRTERL
                     ELDVSGERTELEALRRRARPALLLLNDGDLTFAKIRLDDVSTQTVIDHLSDLDDALAR
                     SLIWAAVWDMTRDGELPASRYVDLVARHAPHEPVPTIVDDILGQAIGAVELYSHPDNR
                     PALRGRLHDMCRAILQQASPGTPHQLTALRATVTTSETDSQLAAAADLLEGRGLPPGM
                     VVDQDLRWFLIRRLAAAGRMSDDDINAESAQDRTDVGLRKAAAACAARPDPVAKEAAW
                     KRLVDPDTPLAMQKALIRGLQERDQEELFAPFLDRWVEMVPRYWRERSSEEAEFFTAG
                     MYPVYRVDDGVVAAADRLLEGGELKESGRRLVVESRDQTLRLQRAQAADHASEAEVGV
                     RT"
BASE COUNT          272 a          623 c          589 g          241 t
ORIGIN      
        1 cagtcctggc gtggcgagcg ggcacgatcc tccacgagat ggcgcacatg tggttcggcg
       61 acctggtgac gatgcgctgg tgggacgacc tctggctcaa cgagagcttc gccacgtaca
      121 tgggcaacga cgcgcaggcc gaggccacca agtacacgag tgcctgggtc gacttcgcca
      181 acggcgacaa gtcatgggcg gccctccagg accaactgcc caccacccac ccgatcgccg
      241 ctgacgtccc cgacgtcagc accgggcgcc tcaacttcga tgggatcagc tacgccaagg
      301 gcgcgtcggt gctgcgccag ctggttgcct gggtcgggca ggacgcattc ttcggcggtg
      361 ttcgcgacta cttcacggag caccagtggg gcaacgcgac cctgcgcgac ttcctggcgc
      421 ctctcgagcg ccactcgggc cgcgacctgg cggcatggac gcgcgagtgg ctgcagaccg
      481 cgggcatgaa cgtgctccac gcggaggtgg cgaccacggc cgacggcatg atcgacagct
      541 gcaccatcgt gcagtccgcg gccaacccgc ggttctcgac gctgcgttcc caccgggtcg
      601 gcgtcggcct gtacgacctc gacgacgacg gccggctggt tcgcaccgaa cggctcgaac
      661 tcgacgtgtc gggggagcgc accgagctgg aagcgctgcg tcgccgcgcc cggccggcac
      721 tgctgctgct caacgacggc gacctcacct tcgccaagat ccggctcgac gacgtgtcga
      781 cgcagactgt gatcgaccac ctcagcgacc tcgacgacgc gctcgcgcgg tcgctgatct
      841 gggcagccgt ctgggacatg acgcgcgacg gcgagctgcc ggccagccgc tacgtcgacc
      901 tcgtggcccg gcatgctccc cacgagccgg tgcccaccat cgtcgacgac atcctcggcc
      961 aggcgatcgg tgcggtcgag ctgtacagcc acccggacaa tcggcccgcg ctgcgcggtc
     1021 gcctccacga catgtgccgg gcgatcctcc agcaggcgtc gccgggcacc ccgcaccagc
     1081 tcaccgccct gcgggcgacc gtgaccacgt cggagacgga cagccagctc gccgcggccg
     1141 ccgatctcct cgagggcagg ggccttcccc cgggcatggt cgtcgaccag gacctccgct
     1201 ggtttctgat ccgccgcctc gccgccgcgg ggcggatgag tgacgacgac atcaacgcgg
     1261 agtcggccca ggacaggacc gacgtcgggc tgcgcaaggc tgccgccgcg tgtgcggctc
     1321 gccctgatcc tgtcgccaag gaggccgcct ggaagcggct cgtcgaccca gacaccccac
     1381 tggccatgca gaaggcgctg atccgtgggc tccaggaacg cgaccaggag gagctgttcg
     1441 ctcccttcct cgaccgctgg gtggagatgg tgccgcgcta ctggcgggag cgaagctccg
     1501 aggaggccga gttcttcacg gctgggatgt acccggtcta cagggtcgac gacggcgtgg
     1561 tggcagctgc cgaccgcctg ctcgaaggtg gcgagctcaa ggagtccggc cgccgcctcg
     1621 tcgtcgagag ccgcgaccag accctccgcc tccagcgcgc ccaggcggcc gaccacgcgt
     1681 cggaagccga ggtgggagtc cgcacataga gcgctacgct ggggt
//
LOCUS       DASYFY010000203         1558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_120335, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000203 DASYFY010000000
VERSION     DASYFY010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120335"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            318..1187
                     /locus_tag="VGN19_03855"
     CDS             318..1187
                     /locus_tag="VGN19_03855"
                     /inference="COORDINATES: protein motif:HMM:NF033747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class E sortase"
                     /protein_id="HEV7195051.1"
                     /translation="MPVYGVPVDRVPADDVGAAVHGAEDDGADDADDGADDDAAPVRA
                     PGDRWRLVARSLGELLVTVGVVLLLFVVYELWVTDLLNAQAQSKLDQSLHHQWSSSAP
                     LAPGTTDHGPFAVGQAFAILHIPRLGADYHRVIVEGTDQDQLAQGPGHYLGTAFPGEK
                     GNVSLAGHRVGRGSPFLELDKLRPGDPIVIETRTSWFVYRVLGDAASGNFGTDASGIP
                     GQQIVLPTNLSVISPTPDAPASAAPSGSYLTLTTCHPRFSARQRLVIHAKLEGSGTSK
                     ADQPHGPPELHGS"
     gene            1225..1383
                     /locus_tag="VGN19_03860"
     CDS             1225..1383
                     /locus_tag="VGN19_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009085537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195052.1"
                     /translation="MYGWIWRHLPGGTGLKAAQSLALVLIVAGLLLFVVFPLVEPYLP
                     FNSVTVDH"
     gene            complement(1465..>1558)
                     /locus_tag="VGN19_03865"
     CDS             complement(1465..>1558)
                     /locus_tag="VGN19_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006504215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEV7195053.1"
                     /translation="FTRTQVLTQAGTAMLAQANQSTQSILKLLG"
BASE COUNT          223 a          556 c          551 g          228 t
ORIGIN      
        1 tggcctacac cggtgcctcg gtcctgaccc cggcactggc cgggctcggc gccctcgtgc
       61 tcggtggcgg cctgctcatg gtgtcgcggc ggcgctccgc acgctgacac acagcgcgaa
      121 ccacgaggcc gcgccctgtt cccttccggg gagcagggcg cggtctcatt tagcatcggg
      181 gcacgacggc cgacggggga gtgtcagtgg aggacgacgg cggcgagagc cgcggccggc
      241 acagagctcc tgaagtcctg gccgtcgacg acgcaggagt tgacagcgcg ccctgtgaca
      301 ccctgcccgt ccacggcgtg cccgtctacg gcgtgcccgt cgaccgcgtg cccgcggacg
      361 acgtcggagc ggctgtgcac ggcgcagagg acgacggcgc ggacgacgca gacgatggcg
      421 cggacgacga cgccgccccc gtccgtgctc ccggcgaccg ctggcgcctc gtcgcgcgga
      481 gtctcggcga gctgctggtc accgtcggcg tcgtcctgct gctgttcgtg gtctacgagc
      541 tctgggtgac cgacctgctc aacgcgcagg cgcagagcaa gctcgaccag tcgctgcacc
      601 accagtggag ctccagcgca ccgctcgcgc cgggcaccac cgatcacgga ccgttcgccg
      661 tgggccaggc cttcgcgatc ctgcacatcc cgcggctggg agccgactac caccgcgtga
      721 tcgtggaagg cacggaccag gaccagctgg cccagggccc ggggcactac ctggggacgg
      781 cgttcccggg ggagaagggc aacgtgtcgc tcgccgggca ccgggtgggc cgggggtcgc
      841 cgttcctcga gctcgacaag ctgcgaccgg gtgacccgat cgtcatcgag acgcgcacca
      901 gctggttcgt ctaccgcgtg ctgggagatg cggcgagcgg gaacttcggc accgatgcga
      961 gcggcatccc gggccagcag atcgtgctgc cgacgaacct gtcggtcatc tccccgacgc
     1021 cggatgcgcc cgcgagcgcc gcgcccagcg ggtcctacct gaccctcacg acctgccatc
     1081 cgcgcttctc ggcccggcaa cggctggtga tccacgcgaa gctcgaaggc tcgggcacca
     1141 gcaaggccga tcagccgcac gggcctccgg agctgcacgg ctcctgagct cgcccccgcc
     1201 cgttcgcttc cggagaggac ctcgatgtac ggctggatct ggcgccacct acctggaggc
     1261 accgggctga aggcagcgca gtcgctggcc ctcgtgctca tcgtggccgg actgctgctg
     1321 ttcgtcgtgt tcccgctcgt ggagccctac ctgccgttca actcggtgac cgtcgaccac
     1381 tgagccgccc gagacgcacg gaaaaggggg gaggccgaag cctcccccct gtccgtatca
     1441 ggtggtgcgg tggcgttacc cagatcagcc gagcagcttg aggatgctct gcgtggactg
     1501 gttggcctgg gccagcatcg cggtgccggc ctgggtcagg acctgggtcc gagtgaag
//
LOCUS       DASYFY010000204         9818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_383109, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000204 DASYFY010000000
VERSION     DASYFY010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9818
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383109"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VGN19_03870"
     CDS             complement(<1..747)
                     /locus_tag="VGN19_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEV7195054.1"
                     /translation="MTQTMDRAVIDDATITDFREHGVTIVRGLFTPEQVGLIERGIER
                     NLADPSPMFKAASRPDDPGKFVEDFCNWQRIEEFRRVAFESRAADVAAALMGSHEVRL
                     YHDHMLVKEPGTKADTPWHQDQPYYDVEGANNCSMWAPVDTVAPESTLEFLAGSHLDG
                     WRMPRTFMDAQAKWFPEGSLTEIPDVESDRASFDIRGWAMEPGDAVFFHMLTLHHSYG
                     VPGTRRRRAFSLRFLGDDMTYAPREWTCSPD"
     gene            888..1829
                     /locus_tag="VGN19_03875"
     CDS             888..1829
                     /locus_tag="VGN19_03875"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEV7195055.1"
                     /translation="MSARDLSLRHLLALLAVHDEGSYRRAAAATGYSQAAITQQIAAL
                     ENAVGAPVFDRHPGPRPVTLTQVGREVVEAARVLVARADLLDARVTEVREGRWGRLAI
                     GTFQSVSATLLPVVLAQVRAEEPDVDISVVQSEDNVVLADSVASGALDVCFLVGPFKD
                     DRLSIREVCRDPFVAIEAADKPARDVLPIAELAGLPLIGHQDCVCHDMVELGFRTAGI
                     TATYVFRSNDNSAVQAMVRAGIGTAVMPLLAIDSHDPLVRVIPLQPPLPQRRILIAVP
                     RTRAAPTAQRFVQRAVMAGKDLPTVRRPPATSAVRAR"
     gene            1901..3151
                     /locus_tag="VGN19_03880"
     CDS             1901..3151
                     /locus_tag="VGN19_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195056.1"
                     /translation="MPRLLADVTPLRVSPEFRRLWAALGISNVGQQMTSVAVGIQVYN
                     LTGSSLAVGIVGFFQLVPLVGFGLYGGALSDSRDRRKLGLLTAVGLMCCSIVLVLQSL
                     AGLGSVALLYAIVAVQSGFFAVGNPARQALIPRLVGLDMLPAANALGMLSFGLGFTLG
                     PLLGGLVIAVTGGETAAYALDAVAFTATMYAMWRLRPMPPLPGAPRTAGWASVVAGMK
                     FLRGRKNLQMSFYVDMAAMVFGMPRALFPALAATFYPGSPLAKATIVGLLSAAPAVGA
                     VVSSALSGPLSHARRQGAITVGAIVVWGLAIATFGFVHQLWLGLALLAVAGAADNVSA
                     VMRQTILQAATPDEYRGRLQGIFTVVVAGGPRLGDVESGAVATLFGEAFSVVSGGVAC
                     LIAVGALVAAMPQFLHYDARHPTP"
     gene            complement(3164..4420)
                     /locus_tag="VGN19_03885"
     CDS             complement(3164..4420)
                     /locus_tag="VGN19_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019048676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195057.1"
                     /translation="MTAAAESAAPRSLWSGRALVLAGIVVSAFTLRTAVTAITPLLGR
                     IGAQLDFGSATIGVFGMLPTAAFAAFGLATPALARRIGLERTALLAMLLAAIGMLTRA
                     MAAQTGTLLVLSVLALGGMGMGNVVLPPLVKRYFGDRVGAISTIYIVVLTLGTMVPAL
                     VAVPLADATSWRVSIASWTIVAVLAAIPWALVLLAERRPSSPLSRLHDAAVAAGGEAA
                     ELEAPAPTGRVWRSPISWGLAAMFGMTSLITYSFFTWLPTILVSTGSSAAFGGTMVAL
                     FAGMGLVSAFTAPGLVVRIANPFPIVVGCAVLFFVGFAGLLYSPQHLTVLWVVIAGLG
                     PSTFPMALTMINLRTRTPAGSSAMSGFTQGLGYSVACLGPVLFGVLHQVTSAWTAPFA
                     LLSLAVVVMVIGGYAACQPRMLEDSW"
     gene            complement(4443..5018)
                     /locus_tag="VGN19_03890"
     CDS             complement(4443..5018)
                     /locus_tag="VGN19_03890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195058.1"
                     /translation="MSPSRTVNPAPRRALRKADDADVHPATTRPAPLSPVAGVGELTP
                     TASPVVPDASPQQNATTDAASTEKSKSGKASAGKARALESAADKKPGSAKPAAPNKAS
                     GDAPVTAAKKASGATKSTVAVWDNRFHGNTSDVLRAQQTTHDLLRGAEGILEVKVPKR
                     LRRAVRLEAENRGLTVDKVVIRLLADWIESP"
     gene            complement(5015..5857)
                     /locus_tag="VGN19_03895"
     CDS             complement(5015..5857)
                     /locus_tag="VGN19_03895"
                     /inference="COORDINATES: protein motif:HMM:NF012369.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEV7195059.1"
                     /translation="MATKDRSQHGQRPVLSCAVMALKGGVGKSTTTLGLAGAAWERGL
                     RTLVVDLDPQANTTAALDPGSFRYTSSDVLADARPGVAADAVVQSGWGVGLDVLPSER
                     ALEHRAVSVGQDSAQRLRVSLTGVVDTYDVVLVDCPPSLGELTRNALAAVQLALVVTE
                     PSFFALPGAEQALGALSIVRAEANLALRAAGILVNRARPQTSEHAFRLAELRAAYGDL
                     VLATVVPERTSVQQAQGACVPIQTWRSPGAREVADAYEDVLDSLLLRATTNLTAPLTG
                     TEHP"
     gene            6004..6687
                     /locus_tag="VGN19_03900"
     CDS             6004..6687
                     /locus_tag="VGN19_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010035781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEV7195060.1"
                     /translation="MSDLIDTTEMYLRTVFELGEEGVTPLRARIAERLGQSGPTVSQT
                     VARMERDGLITVEGDRHLQLTPHGRTLATRVMRKHRLAECLLVEVIGMPWEDVHAEAC
                     RWEHVMSESVERRILDLLGHPTMSPYGNPIPGLDELDDPAMPDEQRVLTSLDRVAGDG
                     AVRVTVRRIGEPIQDDHALMSALARAGATPGSTVKVTRSPGGILVGSAGEYAELSTAT
                     AAHVLVSQG"
     gene            complement(6977..7228)
                     /locus_tag="VGN19_03905"
     CDS             complement(6977..7228)
                     /locus_tag="VGN19_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HEV7195061.1"
                     /translation="MPLFMDVHTIEGGVTAAAVAEAHKADLQTQGKYGVDYLRYWVDE
                     ANGQIFCLVDAPDAETASAVHREAHGLVADAVHPVVEGA"
     gene            complement(7410..8645)
                     /locus_tag="VGN19_03910"
     CDS             complement(7410..8645)
                     /locus_tag="VGN19_03910"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEV7195062.1"
                     /translation="MKLAEVFALVAGPATDVEFVAYDGSRAGTPGGSVRLELKSPRGV
                     SLMLSSPGQLGLARAYVAGELDVDGDMYTALSQLADLGMGHLTARDKVHLAKALAPYA
                     TYRREPPPPEEVRLHGRRHAKNRDGDAIHHHYDVSNQFYEWVLGPSMAYTCAVFPTSD
                     TSLEQAQQEKVDLVCRKLGLKAGDRLLDVGCGWGTMVLHAVKNYGVTAIGVTLSRQQA
                     EFAQQQISDAGLEGQAQVRFQDYRDVPEAGFDAISSIGLTEHIGASNYPAYFSFLRSR
                     LLPEGRLLNHCITRTDTRQKTQYRKGFINRYVFPDGELVPIGQIIDVMEDEHLEVRHE
                     ENLREHYAMTLRDWLVNLDDNWDDAVQEVGRGKARVWRLYMAASRLGFERNWIQLHQV
                     LATRTDDRGSAGVPLRPWF"
     gene            complement(8689..>9818)
                     /locus_tag="VGN19_03915"
     CDS             complement(8689..>9818)
                     /locus_tag="VGN19_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEV7195063.1"
                     /translation="VPLCVPQLRTITLGGAVTGLGIESASWRNGCPHESVLSMDVMTG
                     AGDVLTVTRDAADPHADLFHGFPNSYGSLGYALSLTIELEPAAPYVRLRHIPVGDARG
                     AAQVLAEVCRDGAWDGERVDFVDGTVFSPTEAYVSLGRYEQNAAGQTPSDRTKDSIYY
                     RSVQSERTDLLTTHDYLWRWDTDWFWCSRAFGAQNPTIRKLWPAKLLRSDVYWKLIAL
                     DRRTSFSTRLDAARRRPPREHVVQDIEVPVDRLAEFLDFFHREVGIEPVWLCPLRQRD
                     PDQRWPLYQLDPGTTYINVGFWSTVGVPNGVDPADGRVNRRIEQVVAELGGRKSLYST
                     AFYPREEFDRLYGGTEYRELKDRYDPEGRLLGLYEKTVGRR"
BASE COUNT         1423 a         3378 c         3483 g         1534 t
ORIGIN      
        1 gtcgggggag caggtccact cgcgcggtgc gtaggtcatg tcgtcgccga ggaaccgcaa
       61 cgagaacgcg cgccggcgcc gggtgccggg gaccccgtac gagtggtgca gcgtgagcat
      121 gtggaagaac accgcgtcgc ccggctccat cgcccagccg cggatgtcga agctggcgcg
      181 gtcggactcc acgtccggga tctcggtcag gctgccctcg gggaaccact tcgcctgggc
      241 gtccatgaac gttcgcggca tccgccaacc gtcgaggtgg gagccggcga ggaactcgag
      301 ggtggactcg ggcgcgacgg tgtccaccgg cgcccacatc gagcagttgt tggcgccctc
      361 gacgtcgtag tacggctgat cctggtgcca cggcgtgtcc gccttggtgc cgggctcctt
      421 caccagcatg tggtcgtggt agagccggac ctcgtggctg cccatcagcg cggcggcgac
      481 gtcggcggcg cgggactcga acgcgacccg ccggaactcc tcgatccgct gccagttgca
      541 gaagtcctcg acgaacttgc ccgggtcgtc cggccggctg gcggccttga acatcgggct
      601 ggggtcggca aggttgcgct cgatcccccg ctcgatgagc ccgacctgct ccggggtgaa
      661 caggccgcgg acgatcgtca cgccgtgctc gcggaagtcg gtgatcgtcg cgtcgtcgat
      721 cacggcgcgg tccatggtct gcgtcatctc gggggcctcc tcgtggggtg gtgggtgtga
      781 tgacgaaggt aggcgacgtg acgtgatcgt gaaaagtggt agaagatggt cgttatgaac
      841 atagaacctg aacagcgatc acggccgcct ggaccgaggc ccgcagggtg agcgcccgcg
      901 acctgtccct gcggcacctg ctcgcgctgc tcgccgtgca tgacgagggg tcctaccgcc
      961 gcgcagccgc ggccactggc tattcgcagg ccgccatcac ccagcagatc gcggcgctgg
     1021 agaacgcggt cggggcaccg gtgttcgacc gccaccccgg tccccgcccg gtcacgctga
     1081 cccaggtggg gcgcgaggtc gtggaggcgg cgcgcgtgct cgtcgcgagg gcggacctgc
     1141 tcgacgcccg ggtcaccgag gtgcgcgaag gccgttgggg ccggctcgcg atcggtacct
     1201 tccagtccgt gtccgcgacg ctgttgcccg tggtgctcgc ccaggtccga gccgaggagc
     1261 cggacgtgga catcagtgtt gtgcagagcg aggacaacgt ggtgctcgcc gactcggtcg
     1321 cctctggggc gctggacgtg tgcttcctcg tcggtccgtt caaggacgac cggctctcga
     1381 tccgggaggt gtgccgcgac ccgttcgtgg ccatcgaggc ggccgacaaa ccggcccgtg
     1441 acgtgctgcc gatcgccgag ctcgccggcc tgccgctgat cgggcaccag gactgcgtct
     1501 gccacgacat ggtggagctg gggttccgca ctgcggggat taccgccaca tacgtgtttc
     1561 gcagcaacga caactccgcg gtgcaggcga tggtgcgggc ggggatcggg accgcggtca
     1621 tgccgttgct ggcaatcgac tcgcacgacc cgctcgtgcg ggtgataccc ctgcagccac
     1681 ccctgccgca gcggcgcatc ctgatcgcag tgccgcgtac tcgcgcggca cccaccgcgc
     1741 aacggttcgt gcagcgcgcc gtcatggccg gtaaggacct gccgacggtg agaaggccac
     1801 cggcaacaag cgcagtccgc gcccgttgag gatggtggta cgccgcagct gctgtccctg
     1861 agaccggtct gtgggcagcg gcgccgtaca gtccgtagcc gtgcctcgcc tgctcgccga
     1921 cgtgacccca cttcgggtct cgccggagtt ccgccggctg tgggcggccc tgggcatcag
     1981 caacgtcggc cagcagatga cctcggtggc ggtcggtatc caggtctaca acctcacggg
     2041 gtcctccctc gcggtcggca tcgtggggtt cttccagctc gtgccgctcg tgggcttcgg
     2101 gctgtacggc ggtgccctgt ccgacagtcg cgaccggcgc aagctcgggc tcctgacagc
     2161 cgtcgggctg atgtgctgct cgatcgtgct ggtgctgcag tcgctggccg ggctcggctc
     2221 ggtcgcgctg ctgtacgcga tcgtcgcggt gcagtccggc ttcttcgccg tcggtaaccc
     2281 tgcccggcag gcgctgatcc cgcgcctggt cggactggac atgctgccgg cggccaatgc
     2341 gctgggaatg ctcagcttcg ggctgggctt caccctgggc ccgctgctgg gcgggctcgt
     2401 gatcgcggtg accgggggtg agaccgcggc atacgccctg gacgccgtcg ccttcaccgc
     2461 caccatgtac gcgatgtggc ggttgcgccc gatgccgccg ctgcccgggg cgccgcggac
     2521 agcaggctgg gccagcgtcg tggcgggcat gaagttcctg cgcggacgca agaacctgca
     2581 gatgtcgttc tacgtcgaca tggccgcgat ggtgttcggc atgccacggg ccctgttccc
     2641 ggcgctggct gccacgttct accccggttc gccgctggcg aaggcgacca tcgtcggtct
     2701 gctgtccgcg gcaccggccg tcggtgccgt cgtgtccagc gcgctgtccg ggccgctgag
     2761 ccacgcccgc cgtcagggtg cgatcaccgt tggcgcgatc gtggtgtggg ggctggcgat
     2821 cgcgaccttc gggttcgtcc accagttgtg gctgggcctc gcgctgctgg ccgtcgccgg
     2881 cgccgccgac aacgtcagcg ccgtgatgcg ccagacgatc ctgcaggccg ccacaccgga
     2941 cgagtaccga ggccggctgc agggcatctt caccgtcgtg gtcgcgggcg gaccccggct
     3001 cggtgacgtc gagtccggtg ccgtggcgac gctgttcggc gaggccttct cggtggtgtc
     3061 aggaggcgtg gcctgcctga tagccgtcgg agcgctggtc gcggccatgc cgcagttcct
     3121 gcactacgac gcccgccacc cgaccccctg acgaccgagc cggctaccag gagtcctcga
     3181 gcatgcgggg ctggcaggcc gcgtagccac cgatcaccat gaccacgacc gccagcgaca
     3241 gcagcgcgaa cggtgcggtc cacgccgacg tgacctggtg cagcaccccg aacaggacgg
     3301 ggccgaggca tgcgaccgag tacccgagac cctgcgtgaa cccggacatg gccgaggatc
     3361 cagcaggggt acgagtccgc agattgatca tcgtgagcgc catcgggaag gtgctcggcc
     3421 caagaccggc gatcacgacc cacaggaccg tcaggtgctg gggggagtag agcagcccgg
     3481 cgaaccccac gaagaacagc accgcgcacc ccaccacgat cgggaacggg ttggcgatcc
     3541 gtacgaccag accaggtgct gtgaaggcgg agaccaggcc catgccggcg aagagggcga
     3601 ccatcgtgcc gccgaaggcc gccgagctcc cggtggagac caggatggtc ggcagccagg
     3661 tgaagaacga gtacgtgatg agcgaggtca tgccgaacat tgccgccagg ccccagctga
     3721 tcggtgagcg ccacacccgc ccggtcgggg caggggcctc gagctcggcc gcctcccctc
     3781 cggcagccac cgcagcgtcg tgcaatcgcg aaagcgggct gctggggcgc cgttcggcca
     3841 gcaacaccaa cgcccatggg atcgctgcca gcaccgcgac gatcgtccag gaggcgatgg
     3901 acacccgcca gctcgtggcg tcggcaagtg gcactgcgac gagcgccggc accatcgtcc
     3961 ccagtgtcaa caccacgatg tagatcgtgc tgatggcccc gacccggtcg ccgaagtagc
     4021 gcttcaccag tggtggcagc accacgttgc ccatgcccat gccaccgagt gcgaggacgg
     4081 agagcaccag cagtgtcccg gtctgcgccg ccatcgcgcg cgtcagcatg ccgatcgccg
     4141 cgagcagcat ggccagcagt gccgtgcgct ccagcccgat ccggcgcgcc agggccggtg
     4201 tcgccagacc gaacgcggcg aacgccgcgg tgggcagcat cccgaagacg ccgatggtcg
     4261 ccgatccgaa gtccagctgc gccccgatcc ggcccagcag gggcgtgatc gccgtgaccg
     4321 cggtacgcag cgtgaaggcg gagacgacga tgcccgcgag gacgagcgcg cgtccggacc
     4381 agagcgaacg tggcgcggcg gactcggctg ctgccgtcac ctcagccgtg gcgagcgtgc
     4441 cgtcatggcg actcgatcca gtcggcgagc agccggatca cgaccttgtc gacggtgagc
     4501 ccgcggttct cggcctccag ccggaccgcc ctgcgcaatc gcttgggaac cttgacctcc
     4561 aagattccct cggctccccg cagcaggtcg tgcgtggttt gctgtgctcg aagcacgtcc
     4621 gaggtgttgc cgtggaacct gttgtcccac accgcaactg tcgacttggt ggcgccggac
     4681 gccttcttcg ccgcggtcac cggcgcatcc cctgatgcct tgttcggcgc ggctggcttc
     4741 gccgacccgg gcttcttgtc ggcagcggac tccagggccc gggccttgcc agcagaggcc
     4801 ttgccgctct tcgacttctc ggtgctcgcc gcgtcagttg tcgcattctg ctggggagag
     4861 gcgtcaggaa ccaccgggct cgcggtgggg gtgagctccc cgacaccagc aaccggtgag
     4921 agcggcgcgg gccgcgtcgt ggcgggatgg acatcggcgt cgtcggcctt gcgcagggcg
     4981 cgccgtggtg cggggttcac ggttcggctc gggctcatgg gtgctccgta ccggtcaggg
     5041 gggctgtcag gttcgtggtc gcccgcagca ggagcgagtc gagcacgtct tcgtacgcgt
     5101 ccgccacctc gcgggcaccg ggggagcgcc aggtctggat cggtacgcat gcgccctggg
     5161 cctgctgcac cgacgtgcgc tccgggacca cggtcgccag caccaggtcg ccgtacgccg
     5221 cccgcagctc agcgagccgg aacgcgtgct cgctggtctg cggtcgcgcc cggttgacca
     5281 ggatcccggc cgcccgcagc gccaggttgg cctcggcgcg cacgatcgac agggcgccga
     5341 gggcctgctc ggcaccaggc agcgcgaaga acgacggctc ggtgaccacc agcgccagct
     5401 ggacggcggc gagcgcgttt cgcgtcagct cgcccaggga gggtggacag tccacgagga
     5461 cgacgtcgta cgtgtcgacc accccggtca gcgagacccg cagccgctgc gccgagtcct
     5521 ggcccaccga tacagcgcgg tgctccaggg cccgctccga gggcagcacg tcaaggccga
     5581 ccccccaacc gctctgcacc accgcgtcgg cggccacacc ggggcgggcg tcggcgagca
     5641 cgtcgctcga ggtgtagcga aagctccccg ggtccagcgc ggcggtggtg ttggcctgcg
     5701 gatcgaggtc gacgacaagg gtgcgcaggc cgcgctccca cgccgcgccg gccagtccga
     5761 gcgtggtcgt ggacttgccc acgccaccct tgagcgccat cacggcgcac gagagcaccg
     5821 ggcgttgccc gtgctgggag cggtccttgg tggccatcag ggcccgatcc tgccaccgat
     5881 cacgctcatc gcgggtgagg ccggcaccgg tgcaggtggt gctggcatca gtggggccag
     5941 atcgcggtgc cgcatggggg aggatgggag ggcaccgatc gacgtccggg gaagggctgg
     6001 cgcgtgagcg acctcatcga caccaccgag atgtacctgc gaaccgtctt cgagctcggc
     6061 gaggagggcg tcacgccgct gcgcgcccgg atcgccgagc ggctcggtca gagcgggccg
     6121 acagtgagcc agaccgtggc ccggatggag cgcgacggcc tgatcacggt ggagggggat
     6181 cggcaccttc agctcacgcc gcacggtcgc accctggcga cccgcgtgat gcgcaagcac
     6241 cggttggccg agtgcctgct ggtcgaggtg atcgggatgc cctgggagga cgtccacgcc
     6301 gaggcgtgcc gctgggagca cgtcatgagc gagtcggtcg agcgccggat cctggacctg
     6361 ctcgggcatc ccacgatgtc cccgtacggg aaccccatcc ccggcctcga cgagctggac
     6421 gatcccgcga tgcccgatga gcagcgggtg ctcacctcgt tggaccgggt ggccggggat
     6481 ggggcggttc gggtgacggt gcgtcggatc ggggagccga tccaggacga ccatgccctc
     6541 atgtccgctc tggcgcgggc cggagccacc ccggggtcca ccgtgaaggt gacccggtcc
     6601 ccggggggga tcctggtggg cagtgctggt gagtacgccg agctcagcac cgccacggcc
     6661 gcgcacgtgt tggtctcgca gggttgagca gggccgggcg aacggcccct tgagtcaccc
     6721 aacgcaattg acacactacg gaaggtggat gtgacctaag tcacatccat gatgtgactg
     6781 caggtcaggc ggctgacgga tcggcagcca cggcgattgt ccggttaccg gggcgacgtg
     6841 gtggaactgc ccgaggcgct tgcctagggt cggtcccgtc acccggcgcg acgtcccccc
     6901 tcgcgccggg tggccctatc gtgtcgcccg acccgcgcgc ccgctcgact ctcgcccgct
     6961 cggctcgccc aggcgctcag gcgccctcga cgacggggtg gaccgcgtcc gccaccaggc
     7021 cgtgggcctc gcggtggacg gcgctggccg tctcggcgtc gggtgcgtcg accaggcaga
     7081 agatctgccc gttcgcctcg tccacccagt agcgcaggta gtccacgccg tacttcccct
     7141 gcgtctgcag gtccgccttg tgcgcttccg cgaccgcggc ggcggtgacc ccgccctcga
     7201 tggtgtggac gtccatgaac agaggcatct caagctcatc tcgctcggtc ctggtcaccg
     7261 gtcggccggt cgccgcggcg tcgccaggtt ccctcatacc gaagcgcaac cggggcatcc
     7321 accgcatcgg ggagggatac ccaagtttgg ttcgggtcag tacctatgtc ggaaccggag
     7381 ccccgactgc cacggccccc cgcccgcgct cagaaccagg ggcgcagcgg cactccggcc
     7441 gatcctctgt cgtcggtacg ggtcgcgagc acctggtgca gctggatcca gttgcgctcg
     7501 aaaccgagcc gggaggcggc catgtagagg cgccagaccc gtgccttgcc ccggccgacc
     7561 tcctgcaccg cgtcgtccca gttgtcgtcc aggttgacca accagtcccg cagcgtcatt
     7621 gcatagtgct cgcgcaggtt ctcctcgtgc cgtacctcga ggtgttcgtc ctccatcacg
     7681 tcgatgatct gaccgatggg gaccagctcg ccgtccggga acacgtaccg gttgatgaat
     7741 cccttacggt actgcgtctt ctggcgggtg tcggtccgag tgatgcagtg gttgagcagc
     7801 cggccctccg gcagcagccg ggacctcagg aacgagaagt acgccgggta gttggaggct
     7861 ccgatgtgct cggtcaggcc gatggagctg atcgcgtcga agccggcctc gggcacgtcg
     7921 cggtagtcct ggaaccgtac ctgtgcctga ccctcgagcc ctgcgtcgga gatctgctgc
     7981 tgcgcgaact cggcctgctg ccgcgacagc gtcacaccga tggccgtgac gccgtagttc
     8041 ttcaccgcgt gaaggaccat ggtcccccag ccgcagccca cgtccagcag acggtccccg
     8101 gccttgaggc cgagcttgcg gcacaccagg tcgaccttct cctgctgtgc ctgctccagc
     8161 gaggtgtcgg acgtcgggaa caccgcgcag gtgtatgcca tcgacgggcc gagaacccat
     8221 tcgtagaact ggttgctcac gtcgtagtgg tggtggatcg cgtcgccgtc acggttcttg
     8281 gcgtgccgcc ggccgtgcag cctgacctcc tcggggggcg gtggctcgcg gcgatacgtc
     8341 gcgtacgggg ccagcgcctt ggccaggtgc accttgtcgc gtgcggtgag gtggcccatg
     8401 cccaggtcgg cgagctgcga cagcgcggtg tacatgtcac cgtcgacgtc gagctcgccg
     8461 gcgacgtacg cgcgagccag gcccagctgc ccgggcgacg acagcatcag ggagaccccg
     8521 cgggggctct tgagctccag gcgcaccgat ccgcccggtg tcccggctcg gctgccgtcg
     8581 tacgccacga actccacgtc agtggccggt cctgccacca gtgcgaagac ctcagcgagc
     8641 ttcatgtccg tcaccttctc ctgcggcgtt ggtgcttgcg gcgttcgctc atcgtcggcc
     8701 gacggtcttc tcgtacagac cgagcagccg tccctccggg tcgtagcgat ctttgagctc
     8761 tcggtattcc gtcccgccat acagtctgtc gaactcctcg cgcgggtaga aggcggtgct
     8821 gtagagcgac ttgcgcccac ccagctccgc gaccacctgc tcgatgcgcc ggttcacccg
     8881 cccgtcggca gggtcgacac cgttcgggac gccgacggtg gaccagaagc cgacgttgat
     8941 gtaggtcgtg ccggggtcga gctgatacag cggccagcgc tggtccgggt cgcgttggcg
     9001 cagcgggcac agccacaccg gctcgatgcc cacctcgcgg tggaagaagt ccaggaactc
     9061 ggcgaggcgg tccaccggga cctcgatgtc ctgcacgacg tgctcgcggg gtggccgtcg
     9121 acgggcggcg tccagccggg tcgagaacga tgtgcgccgg tccagtgcga tcagcttcca
     9181 gtacacgtcc gatcgcagca gcttggccgg ccacagcttg cggatggtgg ggttctgggc
     9241 accgaacgcc cgggagcacc agaaccagtc ggtgtcccag cgccacaggt agtcgtgggt
     9301 ggtgagcagg tcggtgcgct cggactggac cgaccggtag tagatgctgt ccttcgtgcg
     9361 gtccgagggt gtctgcccgg cggcgttctg ctcgtagcgg cccaggctca cgtacgcctc
     9421 ggtcggcgag aacaccgtgc cgtccacgaa gtcgacacgt tcgccgtccc aggcgccgtc
     9481 gcggcagacc tcggccagga cctgcgccgc gccccgtgcg tcgccgacgg ggatgtggcg
     9541 aagtcgcacg tacggggccg caggctcgag ctcgatggtc aggctcagcg cgtatcccag
     9601 cgagccgtac gagttcggga agccgtggaa caggtccgcg tgcgggtccg cagcgtcgcg
     9661 cgtcaccgtg aggacgtcgc cggcaccggt catcacgtcc atagacagca ccgattcgtg
     9721 cggacaaccg ttgcgccagc tcgcactctc gatgcccagc ccggtgaccg cgccgcccag
     9781 cgtgatggtg cgcagctgcg ggacgcacag cggcacca
//
LOCUS       DASYFY010000205         1561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1644364, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000205 DASYFY010000000
VERSION     DASYFY010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1644364"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VGN19_03920"
     CDS             complement(<1..824)
                     /locus_tag="VGN19_03920"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEV7195064.1"
                     /translation="MSVEERAAPEEYLGRQAATGVLWLAAQKWAIRVSGFLTLVVLTH
                     QISPRGFGVVAAAMTVVPMVYLLSDLGFSTYLLQTDDADQRSLSTAFWASVLAGVVLS
                     AGLVVIAPLLAVAFRTPDLVPVLRALVLSVVPTVLAGVPLALLRRAMAFRAVAIQALV
                     AAVLAQVVAVATALLGGGVWALVSQIVVSQWVIAVLAWRSAGWLPSWSLSPRQFRVMA
                     VFGVRVSGVDLVASSRVWVETWIIAASLGTTALGLFNISQRLVQVTQELAAASLTPV"
     gene            complement(859..>1561)
                     /locus_tag="VGN19_03925"
     CDS             complement(859..>1561)
                     /locus_tag="VGN19_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012879456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEV7195065.1"
                     /translation="PSEGLADALAERGIRIVEDGAQSQGATRFGRAAGTFGALAATSF
                     YPGKNLGAYGDAGAVLTDDEELARHVRLLGAHGSPSKYRHTEIGFNSRLDTLQAVVLR
                     AKLRRLPRWNEERRAAASVYDRLLGATAGVRLPVTLPGNEHVWHLYVVRVDRRDQVLR
                     MMQSEGVGAGVHYPVPIHLTPAMAGLGYGPGRFPVAERAAGQILSLPMFPGITVAQQE
                     RVAQVLAAALGQGPA"
BASE COUNT          255 a          592 c          533 g          181 t
ORIGIN      
        1 accggcgtca gcgacgcggc ggcgagctcc tgcgtcacct gcaccagccg ctggctgatg
       61 ttgaacaggc ccagggcggt cgtcccgaga ctcgcggcga tgatccacgt ctccacccag
      121 acccggctgc ttgcgacgag gtcgactcct gacacccgca cgccgaacac ggccatgacc
      181 cggaactggc ggggcgagag cgaccacgat ggcagccacc cggcactccg ccacgccagg
      241 acggcgatca cccactgcga gaccacgatc tggctcacca gggcccagac accaccaccc
      301 aggagggcgg tcgccaccgc caccacctgg gccagcacgg ccgctacgag ggcctggatg
      361 gcgaccgcac ggaaggccat ggcgcgcctc agcagggcca ggggcacccc tgctaggacg
      421 gtggggacga ccgagagcac gagcgcgcgc agcaccggca cgaggtcggg agtccggaac
      481 gccacagcga gcagcggcgc gatgacgacc agacccgcgg acagcacgac cccggcgagc
      541 accgacgccc agaaggcggt gctcaggctg cgctggtcgg cgtcgtcggt ctgcagcaga
      601 taggtcgaga agccgaggtc cgacagcagg tagaccatcg ggacgacggt catcgccgct
      661 gcgacgacgc cgaagccgcg cggagagatc tggtgggtca ggaccacgag cgtgaggaac
      721 ccgctgacgc ggatcgccca tttctgcgcc gccagccaga ggacacccgt ggcggcctgc
      781 cgcccgaggt actcctccgg cgccgcccgc tcctcgacgc tcacgctccg cacaccgttc
      841 cgccgggcca ggcgctggtc aggcgggccc ctggcccagg gccgcggcca gcacctgggc
      901 cacccgttcc tgctgggcga cggtgatccc ggggaacatc ggcaacgaca ggatctggcc
      961 ggcggcccgc tccgcgacgg ggaagcgtcc gggcccgtac ccgaggcccg ccatggccgg
     1021 agtgagatgg atgggcaccg gatagtgcac gcccgctccc accccctccg actgcatcat
     1081 ccgcaggacc tggtcgcggc ggtccaccct gacgacatac aggtgccaca catgctcgtt
     1141 cccgggcagc gtcaccggca gccgcacccc tgccgtcgcg ccgagcagcc ggtcgtagac
     1201 ggacgctgcc gcccgacgct cctcgttcca ccgggggagc cttcgcagct tcgcgcggag
     1261 gaccacggcc tggagggtgt ccaaccgcga gttgaagccg atctccgtat gccggtactt
     1321 cgacgggctg ccgtgggcgc ccaggagacg cacgtgccgg gccagctcct cgtcgtccgt
     1381 gaggaccgct ccggcgtcgc cgtaggcgcc gaggttcttg cccggataga agctcgtcgc
     1441 ggccagcgcg ccgaacgtcc ctgccgctcg cccgaagcgg gtcgcgccct gggactgtgc
     1501 cccgtcctcg acgatgcgga tcccccgctc cgccagtgca tccgcgagtc cctccgaggg
     1561 a
//
LOCUS       DASYFY010000206         1860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1224037, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000206 DASYFY010000000
VERSION     DASYFY010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1224037"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..536
                     /locus_tag="VGN19_03930"
     CDS             <1..536
                     /locus_tag="VGN19_03930"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEV7195066.1"
                     /translation="HQGLAVAPSQHQYSETVAADTVLSYVGSPSAQLPRGSTVRLLVS
                     AGPKPRVLPDVSGLTPAQAAQQLTDAGLVPVTVKVFSDSVDSGGLVGLSPASGQSVAR
                     GSTVQVLVSKGPELVAVPSMKGVKTIQDAIDALEAVGLVPGAAHGGLSSRPKAFDPGS
                     GTMVPKGSTVDIILHLL"
     gene            complement(596..1000)
                     /locus_tag="VGN19_03935"
     CDS             complement(596..1000)
                     /locus_tag="VGN19_03935"
                     /inference="COORDINATES: protein motif:HMM:NF014132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HEV7195067.1"
                     /translation="MAQFLSDAWLEEADKIRAEFHGKVTPPTQKVKINLVVTAVPFGD
                     GTVKAHIDTSEGDTEIESGHLDDATTTLTTDYDTARAVFIDQNQQAAMQAFMSGKVQI
                     SGDMTKIMGMMQGTPDPAALEIAARLKAVTDE"
     gene            complement(1120..>1860)
                     /locus_tag="VGN19_03940"
     CDS             complement(1120..>1860)
                     /locus_tag="VGN19_03940"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195068.1"
                     /translation="GGDGSRAAHQAAGRSGPVIDPPVKDQHHWRIMVEDRRLTTQGLE
                     RKQQLLDCAAELFAERGYAETRVIDIVKAAGVAKGLFYWYFDNKEALFRELVVLNRQR
                     LRQAQASAIDPTGEPLLQIRQGAEGSLAFMSRQAHFFALLEVENLGKQFADVLRKGNE
                     IHLADTTALVKQGIVDGSIRDENPSLLALGVLGNVGYYAHFHRTGRIHQSVEELAGFV
                     GRFIVCSLAADETAARRVLAVAPSSTFA"
BASE COUNT          247 a          625 c          677 g          311 t
ORIGIN      
        1 agcaccaggg cctggcggtg gcgccgtcgc agcaccagta ctccgagacg gtcgcggccg
       61 acaccgtgct gtcctacgtg ggctcaccgt cggcgcagct gccccggggg tcgaccgtgc
      121 ggttgctggt gtcggccggt cccaagcccc gcgtgctgcc cgacgtgtcc ggcctcaccc
      181 ccgcccaggc ggcccagcag ctcaccgacg caggtctggt tcccgtcacc gtcaaggtgt
      241 tcagcgacag cgtcgactcc ggtggcctgg tgggcctcag cccggcctcg ggtcagtcgg
      301 tcgcgcgcgg ctccacggtg caggtgctgg tgtcgaaggg gcccgagctg gtggcggtgc
      361 cgtcgatgaa gggcgtcaag accatccagg acgccatcga cgcgctcgag gccgtcggcc
      421 tggtccccgg tgccgcgcac ggcggcctgt cgagccggcc caaggccttc gacccgggca
      481 gcggcacgat ggtgcccaag ggcagcaccg tcgacatcat cctgcacctg ctctgacggc
      541 cgtcgcgtgt ccgcatctgg ttgcctggcc accggccacg gacaggaaat gacgtctact
      601 cgtccgtgac agccttgagg cgcgcggcga tctcgagggc ggccgggtcg ggcgtgccct
      661 gcatcatccc catgatcttg gtcatgtcgc cgctgatctg gaccttgccc gacatgaagg
      721 cctgcatggc cgcctgctgg ttctggtcga tgaacaccgc gcgggcggtg tcgtagtcgg
      781 tggtgagggt ggtggtggcg tcgtcgaggt ggcccgactc gatctcggtg tcgccctcgc
      841 tcgtgtcgat gtgcgccttg acggtgccgt cgccgaaggg caccgcggtg acgaccaggt
      901 tgatcttcac cttctgcgtg ggcggcgtga ccttgccgtg gaactcggcc cggatcttgt
      961 ctgcttcttc gagccacgca tcgctcagga actgggccac gagccctcct cggttcagtc
     1021 gcccggagcc ggctgcgggc agggcggttg ggcggcgacc ttacccaccc gacgtgaggc
     1081 cggggtgggt ccacgcaccg atgcggtggg gtgcggggct caggcgaagg tcgacgacgg
     1141 cgccacggcg agcacccgac gggccgctgt ctcgtcggcc gcgagggagc agacgatgaa
     1201 gcgccccacg aagccggcca gctcctcgac cgactggtgg atgcgcccgg tgcggtggaa
     1261 gtgggcgtag tagccgacgt tgccgagcac cccgagagcc agcaggctgg ggttctcgtc
     1321 gcggatgctg ccgtcgacga tgccttgctt caccagcgcg gtggtgtcgg cgaggtggat
     1381 ctcattgccc ttgcggagca cgtcggcgaa ctgcttgccc aggttctcga cctcgagcag
     1441 cgcgaagaag tgggcctggc gcgacatgaa ggccagcgag ccctcggcac cctggcggat
     1501 ctggaggagc ggctcgccgg tggggtcgat ggcgctggcc tgggcctgcc gcaggcgttg
     1561 gcggttcagc accaccagct cccggaacag ggcctccttg ttgtcgaagt accaatagaa
     1621 gaggcctttg gccacgccgg cggccttgac gatgtcgatg acccgcgtct cggcgtagcc
     1681 gcgctcggcg aacagctcgg cggcgcagtc gaggagctgc tgcttgcgct ccaggccctg
     1741 ggtggtgaga cggcggtctt cgaccatgat gcgccaatga tgctggtcct tgaccggtgg
     1801 gtcaatcacc ggcccagacc ggcccgccgc ctggtgcgcg gcgcggctac cgtcgccgcc
//
LOCUS       DASYFY010000207         2455 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_803250, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000207 DASYFY010000000
VERSION     DASYFY010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_803250"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1248
                     /locus_tag="VGN19_03945"
     CDS             88..1248
                     /locus_tag="VGN19_03945"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEV7195069.1"
                     /translation="MPSPWPSSAPRRRTGIPRGIRVLGVLVLALVQVGGSFGAAHAQP
                     SSRALDALGVVLLLIAPVSLLVRRPPWLRPILAGAATATFLSLGYPFGPVFFGYALAL
                     ILAVVSGRRLLAWAVAAAVLVATVETRFVGSSGVSWQGLGGMVAWTVVVLAAGELVRG
                     RRDRAISYRQAMQERRRRQAGEERLRIAQELHDVVAHHLSLINVQAGVALHLADRKPE
                     HIEPALRAIKDASKEALTELRSLIDLLRDEDSPAPRAPAPTLAALDDLVDRSGRAGIE
                     VTKVVEGQVRPLPAAVELAAYRIVQEATTNVIRHARASRASIVLGYGADALSVSIDDD
                     GRSAPDPANLESGNGLRGMHERAHALGGALMVTASPLGGLRVEATIPTRETR"
     gene            1245..1919
                     /locus_tag="VGN19_03950"
     CDS             1245..1919
                     /locus_tag="VGN19_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010202842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195070.1"
                     /translation="MIRVVLADDQALLRAGIRALLDAEDDIEVVGEAGNGPDAVALVL
                     RLSPDVVLMDIRMPGGDGLEATRAIVEDPALEGTRVVMLTTFDLDEYVFEAIRLGASG
                     FLVKDTEPAELLRGIRAVAAGDALLSPRVTRRLIGEFATRSRPTATPASARLAGLTER
                     EREVVALVGEGLTNDEIGRRLFVSPATAKTHVSRAMVKLQVRDRAQLVVLAYESGLVQ
                     PGWSLD"
     gene            2050..2322
                     /locus_tag="VGN19_03955"
     CDS             2050..2322
                     /locus_tag="VGN19_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018170597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEV7195071.1"
                     /translation="MVTALVTATAQNNWDGPGPWWPIFPILWFLFIVGFFFTFGFFGR
                     RRWGRMHAMSGQRAGEARLAERYAAGEIDEAEYERRLSTLRRMGAS"
BASE COUNT          356 a          814 c          890 g          395 t
ORIGIN      
        1 gtgcgcgagg gctgcgcccg cagaggtatg ccggtctgcg cccggcgcac gacgccgcct
       61 ggctcccagc ctccctaggc tgggggcatg cccagtcctt ggccgtcctc ggcgccacgg
      121 cgacggaccg gaatcccgcg cggcatacgg gtcctcggcg ttctggtgct cgcgctcgtg
      181 caggtggggg gcagcttcgg cgccgcgcac gcacagccaa gcagccgggc cctcgacgcc
      241 ttgggagtcg tgttgctgct gatcgcaccg gtcagcctcc tggttcgtcg gccgccctgg
      301 ctccgaccga tccttgccgg agcggccacg gcaacgttcc tatcgctcgg ctaccccttc
      361 ggcccggtgt tcttcgggta cgcgttggcg ttgatcctgg cggtggtcag cggccgacgc
      421 ctgcttgcct gggcggtggc cgcagcggtg ttggtggcca cggtcgagac tcggttcgtg
      481 gggtcgtccg gggtcagctg gcagggtttg ggcggcatgg tcgcgtggac ggtcgtcgtg
      541 ctggccgcag gggagctggt gcgcggtcgg cgtgaccggg ccatctccta tcggcaggcg
      601 atgcaggagc ggcgccggcg ccaagccggc gaggagcggc tgcgcatcgc ccaagagctc
      661 cacgacgtcg tggctcacca cctgtccctc atcaacgtgc aggccggagt tgccctgcac
      721 ctggcggatc gcaagcccga gcacatcgag ccggcgctga gggccatcaa ggacgccagc
      781 aaggaggcgc tcactgagct ccgatcgctg atcgacctgc ttcgcgacga ggattcaccg
      841 gcgcccaggg cgcccgcccc cactctcgcc gccctcgacg atctggtcga ccgaagtggt
      901 cgggcgggga tcgaggtgac gaaagtcgtt gagggacagg tccgcccgct accagcggca
      961 gttgagctcg cggcataccg gatcgtgcaa gaggccacca ccaacgtgat ccggcacgcg
     1021 cgggcatcgc gggcgagcat cgtcctcggc tatggtgcgg acgccctcag cgtgtccatc
     1081 gacgacgacg ggcgctcggc gcctgacccc gcgaacctcg agtcgggcaa tggcctgcgc
     1141 ggcatgcacg agcgagccca tgccctgggt ggtgcgttga tggtgacggc gtcgccgctc
     1201 ggcggactgc gcgtcgaagc caccatcccc accagggaga cgcgatgatc cgagtggtac
     1261 tcgcggacga ccaggcgttg ctccgggcgg ggattcgggc cctgttggac gcggaggacg
     1321 acatcgaggt ggtcggcgag gcaggcaacg gaccggacgc ggtggcgctg gtacttcgcc
     1381 tgagtcccga cgtggtgctc atggacatcc ggatgccggg tggcgacggt ctcgaggcta
     1441 cccgcgcgat agtcgaggac cctgccctcg aaggtacgcg cgtggtgatg ctgacgacgt
     1501 tcgacctcga cgagtacgtg ttcgaggcaa ttcgcctggg ggccagcggg ttcctcgtca
     1561 aggacaccga gccggccgag ctgctgcggg gcatccgcgc ggtcgccgca ggggatgccc
     1621 tgctcagccc gcgggtgacg aggcggctaa tcggcgagtt cgccactcgg agccgtccga
     1681 ccgccacgcc ggcgtcagct cgcctggccg ggctcaccga acgcgaacgc gaggtggtcg
     1741 ccctcgtggg ggagggcctg accaacgacg agatcggccg acggctgttc gtcagcccgg
     1801 cgacggccaa gactcacgtc agccgcgcca tggtcaagct ccaggtgcgg gaccgggccc
     1861 agctggtcgt gctcgcctac gagagcgggc tggtgcagcc gggctggtcg ctggactgac
     1921 tccgctgagg tagccgggac cacccggcat acccctggcg gtgcagccca ggtgtcgcca
     1981 ccggggggat tcggacgcac cccgtccgac caacgatgga ggtgttcact tccccatcaa
     2041 ggagctgtca tggtcaccgc acttgtcacc gctaccgcgc agaataactg ggacggacca
     2101 ggcccgtggt ggccgatctt cccgatcctg tggttcctat tcatcgtcgg gttcttcttc
     2161 acgttcgggt tcttcggccg caggcggtgg gggcgcatgc acgccatgtc cggtcagcgg
     2221 gccggcgagg cccggctggc cgagaggtat gccgccgggg agatcgacga ggccgagtac
     2281 gagcgccggc tctccacact ccgtcggatg ggggcgtcct agccgacgcc gcatcgatat
     2341 cgcggacgca ttgtcagaaa cgttgcgcag ggggacgatt gtcctgtcag gcccgccatt
     2401 ggatcgacgg accgcttctc aagagaggtg gttgttcaca ctatgaagcg atgga
//
LOCUS       DASYFY010000208         3306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_383322, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000208 DASYFY010000000
VERSION     DASYFY010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383322"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2485
                     /gene="gyrA"
                     /locus_tag="VGN19_03960"
     CDS             <1..2485
                     /gene="gyrA"
                     /locus_tag="VGN19_03960"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018775665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEV7195072.1"
                     /translation="QYHPHGDSAIYDTLVRLAQPWVMRAPLIQGQGNFGSPGNDPAAA
                     MRYPLVDGQGNFGSPGDDPAAAPRYTECRMAPLALEMVRDIDQDTVDFRDNYDGKTQE
                     PVVLPSRFPNLLVNGSSGIAVGMATNIPPHNLREVADAAQWVLANPEATREEVFEAMI
                     ARISGPDFPTGALILGRKGIEEAYRTGRGSIIMRAVVEVEEIQGRQCLVVTELPYQVN
                     PDTLAQKIAELTKEGRLSGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQL
                     QNNFGANMLALVDGVPRTLPVDAFIRHWVEHQIEVIVRRTQFRLRKAEADIHILRGYL
                     KALDALDEVIALIRRSQTVEAARDGLIELLAIDEIQARAILDMQLRRLAALERQKIID
                     DHNRLEAMILDFQDILDKPERQRTIVSDELAEIVAKYGDERRTRIEFFDGDMSMEDLI
                     PEEDVVVTITRGGYAKRTRVDAYRSQGRGGKGVRGASLRGDDMVDHFFTTTSHHWLLF
                     FTNLGRVYRAKAYELPDSGRDAKGQHVANLLAFQPEEKIAQVLDVRDYAEQPYLVLAT
                     KNGLVKKTRLADYDSPRTGGLIAINLKDGDELVAADLASATDDLLLVSRKAQSVRFHA
                     TDAQLRPMGRATSGVTGMRFRGGDSLLSLSVIHEGDDPDVFVVFENGMAKRSPASDWN
                     AKGRGGLGVAVAKITERNGDLVGALTVDEDDEVLVILGKGNIVRMPVSPVTRRGRNTQ
                     GMKFANPGAGDSVVALARNPERAVEAELGQSIVDGAVDVMPDQAVNGVVDDDSTGLDA
                     VPSGVNDQVAEGDVPAAETSDGDASGGTE"
     gene            2632..2985
                     /locus_tag="VGN19_03965"
     CDS             2632..2985
                     /locus_tag="VGN19_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3566 domain-containing protein"
                     /protein_id="HEV7195073.1"
                     /translation="MKLTVSRVDPWSAMKMSFLISVALGIAGVVMVAVLWMILSGMGV
                     FSQINRLVGTVFNDPSNPFNIMDFVGFGRVLSLSIVIGVIDVILMTALATLGAFLYNI
                     CSALVGGLQLTLTDD"
BASE COUNT          547 a         1124 c         1126 g          509 t
ORIGIN      
        1 tcagtaccac ccgcacgggg actcggcgat ctacgacacc ctggtccggc tggcgcagcc
       61 gtgggtgatg cgggcgccgc tgatccaggg ccagggcaac ttcggttccc cgggcaacga
      121 cccggcggcc gcgatgcggt acccgctggt cgacggtcag ggcaacttcg gcagcccggg
      181 cgacgacccg gccgccgccc cgaggtacac cgagtgccgg atggcgccgc tggccctgga
      241 gatggtgcgc gacatcgacc aggacacggt cgacttccgc gacaactacg acggcaagac
      301 gcaggagccg gtcgtcctgc ccagccggtt ccccaacctg ctggtcaacg gctcgtcggg
      361 catcgccgtc gggatggcga ccaacatccc gccgcacaac ctgcgcgagg tcgccgacgc
      421 cgcgcaatgg gtgctggcca accccgaggc gacccgcgag gaagtcttcg aggcgatgat
      481 cgcccgcatc tcggggcctg acttccccac cggtgcgctg atcctggggc gcaagggcat
      541 cgaggaggcc taccgcaccg gccgaggctc gatcatcatg cgggccgtcg tcgaggtcga
      601 ggagatccag ggccggcagt gcctggtcgt gaccgagctg ccgtaccagg tcaaccccga
      661 caccctcgcc cagaagattg ccgagctgac caaggaaggt cgcctgtccg gcatcgccga
      721 catccgcgac gagacctccg gtcgcaccgg ccagcgcctg gtcatcgtgc tcaagcgcga
      781 cgcggtcgcc aaggtcgtgc tcaacaacct ctacaagcac acccagctgc agaacaactt
      841 cggcgccaac atgctcgccc tggtcgacgg cgtgccgcgg acgctgccgg tggacgcgtt
      901 catccggcac tgggtggagc accagatcga ggtcatcgtc cgccgcacgc agttccgcct
      961 gcgcaaggcc gaggctgaca tccacatcct gcgcgggtac ctcaaggccc tggacgcgct
     1021 cgacgaggtc atcgccctga tccgtcggtc ccagaccgtc gaggccgcac gcgacgggct
     1081 gatcgagctg ctggcgatcg acgagatcca ggcccgcgcg atcctcgaca tgcagctgcg
     1141 acggctcgcg gccctcgagc gccagaagat catcgacgac cacaaccggc tcgaggccat
     1201 gatcctggac ttccaggaca tcctcgacaa gcccgagcgt cagcggacca tcgtctccga
     1261 cgagctggcc gagatcgtgg ccaagtacgg cgacgagcgc cggacccgga tcgagttctt
     1321 cgacggcgac atgtcgatgg aagacctcat ccccgaggag gacgtggtcg tcaccatcac
     1381 ccggggcggg tacgccaagc gcacccgcgt cgacgcgtac cgctcccagg gccgcggcgg
     1441 caagggcgtg cgcggcgctt ccctgcgggg cgacgacatg gtcgaccact tcttcacgac
     1501 gacctcgcac cactggctgc tgttcttcac caacctcggc cgggtctatc gggccaaggc
     1561 gtacgagctg ccggactcgg ggcgcgatgc caagggtcag cacgtggcga acctgctggc
     1621 gttccagccg gaggagaaga tcgcgcaggt gctcgatgtg cgcgactacg ccgagcagcc
     1681 gtacctggtg ctcgcgacca agaacggcct ggtcaagaag acgcggctgg ccgactacga
     1741 ctccccgcgc accggtgggc tgatcgccat caacctcaag gacggcgacg agctcgtcgc
     1801 ggcggacctg gcgtcggcga cggatgacct gctgttggtg tcgcggaagg cgcagtcggt
     1861 tcgcttccac gccaccgacg cgcagctgcg cccgatgggc cgggccacca gcggtgtcac
     1921 cgggatgcgg ttccgcggcg gtgactccct gctgtccctg agcgtgatcc acgagggcga
     1981 cgacccggac gtgttcgtgg tgttcgagaa cggcatggcc aagaggtcgc cggcctcgga
     2041 ctggaatgcc aagggccgcg gtggcctcgg cgttgcggtc gccaagatca ccgagcgcaa
     2101 cggcgacctc gtcggtgcgc tgacagtgga cgaggacgac gaggtactcg tcatcttggg
     2161 caagggcaac atcgtgcgta tgccggtgag cccagtgacc cggcgcgggc gcaacaccca
     2221 gggcatgaag ttcgccaacc ctggcgctgg tgactccgtc gtcgcgctgg cccgcaatcc
     2281 cgagcgggcg gtcgaagccg agctgggcca gtcgatcgtc gatggcgcag tggacgtcat
     2341 gcctgatcag gcggtcaacg gcgtggtcga tgacgactca actggactgg atgccgtacc
     2401 gtcaggggtg aacgatcagg tggcggaggg cgacgtgccc gctgctgaaa cgtctgacgg
     2461 cgacgccagt ggaggtaccg agtgagcacg gcaggccaga cgagcaccgc ctcgtcacgc
     2521 cccgcaggcg gcccgaagca ggagaccccc ggcgctccgt cgggtccaag gcccgcggct
     2581 ggcggtccga cccgtccggc tggtgccgct ggagtggctc gcgctcgccg cgtgaagctg
     2641 accgtctccc gcgtcgaccc gtggtcggcc atgaagatgt cgttcctcat ctccgtggcg
     2701 ctcggcatcg ccggcgtggt gatggtggcg gttctgtgga tgatcctgtc cgggatgggc
     2761 gtgttctcgc agatcaaccg gctggtgggc accgtgttca acgacccgtc caacccgttc
     2821 aacatcatgg acttcgtcgg cttcggccgg gtgctctcgc tgtcgatcgt catcggggtc
     2881 atcgacgtca tcctgatgac cgctctggcc acgctgggtg cgttcctcta caacatctgc
     2941 tccgccctgg tcggcggcct gcagctcacc ctcaccgacg actgagcggg cgctgggagc
     3001 gagctccgcg gcatacctct cctgcagcaa ccctggcagc acctcgcgca gcaacctctg
     3061 cttgcagaag ttgctgcccg gagcccaggt tgctgcatgg gttgcgggca cgaacctgtg
     3121 ctgagtgggg tgccgtgtgg ggtgccgagt gggctggtca gaggccccgg aacccgtttt
     3181 ggaggtgggt atgccggtgc tgtaacctcg tgcctcgtgc cacccaccgt ggcacagcgg
     3241 agattgggct cacgggccta tagctcagac ggttagagcg cttccctgat aaggaagagg
     3301 ccacag
//
LOCUS       DASYFY010000209        13396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_961205, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000209 DASYFY010000000
VERSION     DASYFY010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 13396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13396
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_961205"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1343)
                     /locus_tag="VGN19_03970"
     CDS             complement(<1..1343)
                     /locus_tag="VGN19_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015295 - solute:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015718 - monocarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate:H+ symporter"
                     /protein_id="HEV7195074.1"
                     /translation="MSLDLFSLLHPALAAASTPAIPAARLVPAALLGIAVIVLLITRF
                     KLHPFLGLTIGSLVVGAVAGVQLSATVDSFTKGFGATAASVGTLIALGAMFGKLLADS
                     GGADEIVDTIVGRSSARTLPWAMAGVGAIIGLPMFFEIGLVLLMPVIFLVARRSGLSV
                     IKVGIPALAGLSAMHGLVPPHPGPLVAIDALKANLGLTLGLGVLVAIPTVAIAGPLFA
                     RFAGRWVDVPAPTMYETRENALDPRPSFGLTLFAVLTPVVLMLGKALADILAGKDNPG
                     RTVLDFVGTPLIALLIAVIVGMFTLGRGARMGTKELAKSLEQALPPIAGIILIVAAGG
                     GFKQTLVDTGIGKLVATWVQGSGLSVLLLAWLVAVLIRLATGSATVATVTASGILAPL
                     AAGMAPTHVSLLVLAIGSGSVFFSHVNDAGFWLVKEYFGLSVGQTIKSWSLMETVL"
     gene            complement(1340..1861)
                     /locus_tag="VGN19_03975"
     CDS             complement(1340..1861)
                     /locus_tag="VGN19_03975"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEV7195075.1"
                     /translation="MQQPPPLVVVMGVSGSGKTTVGAALAQRLGVPFADADDFHPSEN
                     IAKMSAGIPLDDNDRRPWLQAIADWLAQHAETGGVASCSALKRGYRDILTGAAPDTFF
                     LHLHGDRDVLAARVAARPAHFMPAALIDSQFATLEPLQADERGAVLDVSKSIDDLVTE
                     AVTLLTAKGGVPA"
     gene            2016..2735
                     /locus_tag="VGN19_03980"
     CDS             2016..2735
                     /locus_tag="VGN19_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HEV7195076.1"
                     /translation="MTSPIPAHSASAAGGLHATVLDALGRDIVSGTVAVGEVLRIDQL
                     DLSYGVSRPVVREAVRVLESMGLVETRRRLGVRVRPRAEWHVFDPRVIRWRLDGPDRE
                     EQLLSLGELRRGFEPVAAELAAARATPQQCGAMTGAVMQMSVHAKAGDLEAYLQADTL
                     FHRTMLEASGNEMLAALHNVVGEVLAGRTHHHLMPPRPNPLAIRLHADVAEAIQSGDG
                     SAAFQAMTSIIDEASAALRDS"
     gene            complement(2750..3220)
                     /locus_tag="VGN19_03985"
     CDS             complement(2750..3220)
                     /locus_tag="VGN19_03985"
                     /inference="COORDINATES: protein motif:HMM:NF016840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF664 domain-containing protein"
                     /protein_id="HEV7195077.1"
                     /translation="MTLVDKETYLRFCDEALVGMRDLVVELGDQVANRRPELPDANSP
                     FAILTHCLGVCAHWASTVNLGRVVPRDRPAEFTASGLVADLAADVDRMRESLAGWVAA
                     ADLAAAPDNPPPPPEDFFAAIQGAVLFHVYEELSQHRGQLEITRDVLMNPAEPS"
     gene            complement(3224..5338)
                     /gene="ligA"
                     /locus_tag="VGN19_03990"
     CDS             complement(3224..5338)
                     /gene="ligA"
                     /locus_tag="VGN19_03990"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEV7195078.1"
                     /translation="MADVSEIVSSTVPQEARHAWAELAEQASDAQFAYHVKDAPTISD
                     GEYDELIRRLNALETDYPELRTPQSPTQQVGGAVFSTDFQAVDHLERMLSLDNCFSPQ
                     ELAQWAARVTRDAGTAAYHYLCELKIDGLAVNLLYENGRLTRALTRGDGRTGEDVTHN
                     VRTIEGIPHQLAGSGHPKRVEIRGEVFFPLEGFAELNASLVEAGKAPFANPRNSAAGS
                     LRQKDPRVTASRPLHMLVHGIGFRDGLELTRQSEAYEKLREWGLPISKHFRVLDVIDE
                     VQEFVRYFGEHRHSVEHELDGIVVKVDELTVQRQLGSTSRAPRWAIAYKYPPEEVNTK
                     LLDILVNVGRTGRVTPFGVMKPVVVAGSTVERATLHNADEVRRKGVLIGDTVVLRKAG
                     DVIPEILGPVVDLRDGTEREFVMPTLCPSCGTPLRPEKEGDKDIRCPNSRTCPSQLRE
                     RLAGLAGRGAFDIEALGWEGATALLDSGVLEDESGLFGLDETGIAQVPLFTRAAKKTD
                     PLEAVVDGRVLSANGKRLVENLAQAKRQPLWRVLVALSIRHVGPTAARALAQHFGSMA
                     AIREANVAELAGVEGVGGVIADAVREWFDAPENSWHLRIVDQWAADGVVMRDERDTSV
                     EQTLAGLTVVVTGSLEGFSRDEAKEAILARGGKASGSVSKNTDYVVVGENAGSKEEKA
                     RELGRPILDESGFRRLLETGEV"
     gene            5458..6960
                     /locus_tag="VGN19_03995"
     CDS             5458..6960
                     /locus_tag="VGN19_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEV7195079.1"
                     /translation="MTNLASNLVTTSREHPDDVAIKFMGNDISYGQIHGMAAQVAGSL
                     RAAGVEPGDRVAIILPNVPAFPVVFFGALLAGAIVVPMNPLLKSGEIDFFFTNSGAKV
                     AFVWPDFVAEATEGARNSGTRIIPCGPMGPAEGQLEPGEPIAVPVERDDNDTAIVLYT
                     SGTTGRPKGAELTHRNVHLNAHRSSVEIQQTTSADVVMGCLPLFHVFGLVVGLNAAVI
                     AGAALALIPRFDPAEAIKVIGNERVTIMMGVPTMYAAILNHPDSDSMDTTSLRTCCSG
                     GSAMPLEVMKAFESKFGCVILEGYGLSETSPVASFNMPDRERKPGTIGVAIPGCEMKL
                     VDLEGNDVPPGEGVGEIAIRGDNVMKGYWQNPEATAEAIPDGWFRTGDLATVDEEGYF
                     TIVDRKKDMILRGGMNVYPREVEEVLYSHPDVLEAAVVAVPDDLLGEDVGAAVALRPE
                     ATATLADVQSFVKERIAAYKYPRHLWQVSELPKGPTGKILRREVHKPTEA"
     gene            complement(6969..7952)
                     /locus_tag="VGN19_04000"
     CDS             complement(6969..7952)
                     /locus_tag="VGN19_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEV7195080.1"
                     /translation="MSSVVTSRPATAPARSTRVPWQAKYLMLALIWGSSFLLMKVGLR
                     TMAPLQISGLRIFAGTVVLLGLLAATGGRLPRERRVWGHLAVSGIFLTALPFSLFALG
                     EARVSSALAGIGNATTPLAAVFFALALLPSDRLSARKLVAVVIGFVGVVVIMQPWASA
                     GRPDLLGFGMTLVAGACYGLGWTYNRRYLGKADLGGLSMPTALLVVGSALMVPVLLVW
                     WLAHRDTYATPWAGHANTTGGSALLPLMCVLVLGVVGTGLAYMLQFDVVRGAGATVST
                     TVTYLIPVVSVILGVVVLHERLAWPQLLGAAIVLVSAVVIGLPDRRRRAAA"
     gene            complement(7960..8943)
                     /locus_tag="VGN19_04005"
     CDS             complement(7960..8943)
                     /locus_tag="VGN19_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HEV7195081.1"
                     /translation="MARATGIGSLPGTDIREALRGVRDLLGDGHLPYLPELPARGPGA
                     EMLGRSADLLVDLHVDLQPGGWRFVERPGHDAARTAAFWHQDLDELAEAFDGYEGDLK
                     LQAAGPWTLLAGLELTRGERAVSDPGAVRDLIGSLAEGLRQHVAEVGRLVPGATLVVQ
                     LDEPSLPAVLAGHLPTVSGFGHLRPIDPQIVRDGLREVLAAVPDAATVVHCCDPGIPL
                     PLLRTTGVGAVAMDTTALTAPRWESIAATVEDGVSLYAGCLPTDGTGSAKAAAAAVTR
                     GWQDAGLSVRGLRDLVATPSCGLAGLTPPGAWRVQRAAVDVAVELSERAES"
     gene            complement(9027..10112)
                     /gene="mnmA"
                     /locus_tag="VGN19_04010"
     CDS             complement(9027..10112)
                     /gene="mnmA"
                     /locus_tag="VGN19_04010"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEV7195082.1"
                     /translation="MRVVAAMSGGVDSAVAAGRMLDAGHEVVGVHLALSQSAATLRES
                     ARGCCTIEDAGDARRVADMLGIPFYVWDMAARFKRDVMEDFVAEYSAGRTPNPCLRCN
                     ETIKFAALLDKAVALGFDAVATGHYAQVVTRSDGTRELHRAVDSDKDQSYVLGVLDAE
                     QLARAFFPLGDTTKPDIRAEAKQRGFYVASKPDSHDICFIPDGDTKGWLTSRLGEQPG
                     EIVDVTSGAVVGAHAGAYAYTVGQRRGLGLDRSSLDAEPRYVVDVDTAANRVTIGTAD
                     LLGVNAIRGDHARWCGAPPRGVVSLGAQVRAHGEEVPAQAWASGDDVEVRLSTRLRGV
                     APGQSVVLYEGTRVVGSATIATTWLER"
     gene            complement(10112..11299)
                     /locus_tag="VGN19_04015"
     CDS             complement(10112..11299)
                     /locus_tag="VGN19_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013884432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HEV7195083.1"
                     /translation="MPAYLDHAATTPMLPAALQAMTEQLAITGNASSLHTSGRLARRT
                     VEEAREGIAKALGARPSEVLFTSGGTESDNLAVAGTFTARRESDPARIRIVSSSIEHH
                     AVLDCVEHLVTHEGAKVTWVEPDSRGLITVEAVRAAIETDPESVALVSVMWANNEVGT
                     VQPVAQLAAVAHEFGVPFHTDAVQAAGHVPVDFAASGADLMTITGHKVGGPLGVGALV
                     ARRDAVLAPRSFGGGQERQLRSGTLDVPAIRAFAVAIEEATSMLTSEADRLVALRDRL
                     IRSALDLGYEITVGGVWEPGDGIRRLPGNAHLLVPGCEGDSLLYLLDAAGVECSTGSA
                     CQAGVPQPSHVLLAMGLPERAARGALRLTLGHTSTDADVDALLAALPAAIDRARRASG
                     VSG"
     gene            complement(11614..12573)
                     /locus_tag="VGN19_04020"
     CDS             complement(11614..12573)
                     /locus_tag="VGN19_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEV7195084.1"
                     /translation="MAEVLVLVDHANGEVRKTTSELLTIARRLGEPSAVFVGDGFDAA
                     KETLAKYGAAKVYRVEAPEVTEFLVAPQAELLAQLVEKTSAAAVLIPSNTAGKEIAAR
                     LAIKTESGLITDAVDVQAAEGGGVATTQSVFAGSFSVQATVTKGTPIVTVKPNSAAPE
                     EAAGAAADEVFEVTISDAAKGAKVTESKPKQATGRPELTEAAIVVSGGRGTGGDFSKV
                     EEFADSLGAAVGASRAAVDAGWYPHTSQVGQTGKQVSPQLYVACGISGAIQHRAGMQT
                     SKTIVAINKDEEAPIFELVDFGVVGDLFQVLPQATEAVKTAKG"
     gene            complement(12611..13393)
                     /locus_tag="VGN19_04025"
     CDS             complement(12611..13393)
                     /locus_tag="VGN19_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEV7195085.1"
                     /translation="MNIVVCVKYVPDAQSDRTFNDSDNTTDRVGVDGLLSELDEYAVE
                     EALKIVEAGEGEVTVVTVGPDQAADALKKALQMGADKAVHVNDEAIHGSDAVATSLVL
                     AEAITKIGPADLVITGMASTDGTMSVVPAMLAERLGLPQVTFASELTVDGTTVTIRRD
                     GDAASETIVASLPALVSVTDQINEPRYPSFKGIMAAKKKPVETWSLADLGIDSSKVGL
                     DAAWTKVTSFTKRPPREQGQIVTDEGDGGTKLAEFLAAQKFI"
BASE COUNT         2160 a         4634 c         4641 g         1961 t
ORIGIN      
        1 agcacggtct ccatgagcga ccacgacttg atggtctggc cgacgctgag gccgaagtac
       61 tccttgacca gccagaagcc agcgtcgttg acgtgcgaga agaagaccga tcccgagccg
      121 atcgccagga cgagcagcga cacgtgggtc ggagccatac cggccgccag gggcgcgagg
      181 atgccggacg cggtgacggt ggcgaccgtc gccgaacccg tggccaggcg gatcagcacg
      241 gccaccagcc aggcgagcag cagcaccgac agcccgctcc cctgcaccca ggtggccacg
      301 agcttgccga tcccggtgtc gaccagagtc tgcttgaagc cgccaccggc tgccacgatg
      361 aggatgatgc cggcgatggg cggcagcgcc tgctcgagcg acttcgcgag ctccttggtg
      421 cccatgcgcg cgccgcggcc cagggtgaac atgccgacga tgacagcgat gagcagggcg
      481 atcagaggcg ttccgacgaa gtcgagcacg gtgcgccctg ggttgtcctt gcccgcgagg
      541 atgtcggcaa gcgccttgcc cagcatgagg acgaccgggg tgaggacggc gaagagggtc
      601 aggccgaacg aggggcgcgg gtcgagggcg ttctcgcggg tctcgtacat cgtgggggcg
      661 gggacgtcga cccagcggcc ggcgaaccgg gcgaagagcg ggccggcgat ggccacggtc
      721 gggatggcga cgagcacgcc caggcccagg gtcaggccga ggttggcctt gagggcgtcg
      781 attgccacca gtgggccggg gtggggtggg acgagcccgt gcatggccga gaggcctgcg
      841 agggcgggga tgccgacctt gatgacggac aggccggacc ggcgcgccac caggaagatg
      901 actggcatga gcagcaccag gccgatctcg aagaacatcg gcagtccgat gatggcgccg
      961 actccggcca tggcccacgg cagggtgcgc gcgctggagc ggccgacgat cgtgtcgacg
     1021 atctcatcgg cgccgccgga gtccgcgagc agcttgccga acatcgcgcc gagggcgatc
     1081 agggtgccga cgctcgctgc ggtggccccg aagcccttgg tgaagctgtc caccgtcgcg
     1141 gagagctgga ccccggccac ggcaccgacg accagcgagc cgatggtgag gccgaggaag
     1201 ggatgcagct tgaagcgggt gatgagcagg acgatgacgg cgatgccgag cagggctgcg
     1261 ggcaccagcc tcgccgcggg gatcgccggc gtgctggcgg ccgccagggc ggggtggagg
     1321 agggagaaca ggtcgaggct catgcgggga ctccgccttt cgcggtgagg agggtaacgg
     1381 cttcggtgac gaggtcgtcg atggacttcg acacgtcgag gacagctccc cgctcgtccg
     1441 cctggagcgg ttcgagcgtg gcgaactggc tgtcgatgag cgcggccggc atgaagtggg
     1501 ccgggcgcgc ggcgaccctg gcggcgagca cgtcgcggtc gccgtgcagg tgcaggaaga
     1561 aggtgtcagg tgccgcgccg gtgaggatgt cgcggtagcc gcgcttcagc gccgagcagc
     1621 tggccacgcc gccggtctcg gcgtgctggg ccaaccagtc agcgatggcc tggagccagg
     1681 ggcggcggtc gttgtcatcc agggggatcc ccgcggacat cttggcgatg ttctcagatg
     1741 ggtgaaagtc gtccgcatcg gcgaacggga ccccgaggcg ctgcgcgaga gccgcgccca
     1801 cggtggtctt cccggagccg gacaccccca tcacgacaac gaggggcggt ggttgttgca
     1861 tgtccgtgac tcctttgtcc ggctcgggtg cgcctgttcg acgactcgag tcactagagt
     1921 gccccctcag acctgcctta tcaagagttt tgcaaaataa ataatacttc ttagcgatcg
     1981 caggaggaac gtctgtcttc tggcacgctg gactcatgac ctccccgata cccgcccact
     2041 cggcttcagc cgccggtggc ctgcatgcga ccgtcctcga cgcgttgggg cgcgacatcg
     2101 tgtcgggcac ggtggccgtc ggtgaggtgc tccggatcga ccagctcgac ctgagctatg
     2161 gcgtgtcgcg accggtggtg cgcgaggccg tccgggtcct ggagtccatg gggctggtgg
     2221 agacccggcg acgtctcggg gtacgcgtcc gcccacgcgc ggagtggcac gtcttcgacc
     2281 cgagagtcat ccgctggcgg ctcgacgggc cggaccggga ggagcagctg ctctccctcg
     2341 gtgagctgcg tcgtggattc gagccagtcg cggccgagct ggcggcagca cgtgcgacgc
     2401 cccagcagtg cggcgcgatg acgggcgcgg tgatgcagat gtcggtgcac gccaaagcag
     2461 gcgacctcga ggcgtacctc caggcagaca cgctcttcca ccggacgatg ctcgaagcct
     2521 cagggaacga gatgctcgcg gcgctgcaca acgtcgtcgg cgaggtgctg gccggtcgta
     2581 cccaccacca cctcatgccg ccacggccca acccgctcgc catccgtctg cacgctgatg
     2641 tcgctgaagc gatccagtcc ggggacggca gcgccgcgtt ccaggccatg acctcgatca
     2701 tcgacgaggc aagcgcagcc cttcgggact catgagggct cagcgggatt catgagggct
     2761 cagcgggatt catgaggaca tcccgagtga tttccagctg cccgcggtgc tgcgacagct
     2821 cctcgtagac atggaaaagc accgccccct ggatggcggc aaagaagtcc tccggcggag
     2881 gtggcggatt gtccggtgct gccgcgagat ccgccgcagc cacccatccg gccagagact
     2941 cccgcatccg gtcgacgtcg gccgcgaggt ccgccaccag gcctgaggcg gtgaactccg
     3001 caggccggtc ccgcggaacc acgcggccga ggttgaccgt cgacgcccag tgcgcgcaga
     3061 ccccaaggca atgggtgagg atcgcgaacg ggctgttggc gtctggcagc tctggacggc
     3121 ggttggccac ctggtcacca agctcgacga ctaggtctcg cataccgacc agggcctcgt
     3181 cacagaagcg cagataggtc tccttgtcga ccagggtcac ggctcagacc tccccggtct
     3241 ccagcaacct gcggaaaccc gactcgtcga ggatggggcg ccccagctca cgcgccttct
     3301 cctccttgga gccagcgttc tcccccacca cgacgtagtc ggtgttcttg gagaccgatc
     3361 cggaggcctt gccaccacgc gcgaggatgg cctctttggc ctcgtcccgg gagaagccct
     3421 cgagtgaccc ggtcacgacg acggtcaggc ccgccagggt ctgctcaacc gaggtgtcac
     3481 gctcgtcacg catgacgacc ccgtcggcag cccactggtc gacgatccgc aggtgccagg
     3541 agttctccgg tgcgtcgaac cattcccgca ctgcgtcggc gatgactccg ccgaccccct
     3601 cgacaccagc gagctcagcg acgttggcct cgcggatcgc cgccatcgag ccgaagtgct
     3661 gcgccaacgc ccgcgcggcg gtggggccga cgtgccggat cgacagcgcc acgagcaccc
     3721 gccacagggg ctgccgcttg gcctgcgcaa ggttctcgac caggcgcttg ccgttggcgg
     3781 acagcacccg gccatcgacg accgcttcga gcgggtcggt cttcttcgcg gcgcgggtga
     3841 acagcggcac ttgggcgatc ccggtctcgt ccaggccgaa caagccgctc tcgtcctcga
     3901 gcacccccga gtcgagcagg gcggtggcgc cctcccagcc gagtgcctcg atgtcgaagg
     3961 cccctcgccc ggccagaccg gcaagacgtt cgcgcagctg ggaggggcag gtgcgcgagt
     4021 tggggcagcg gatgtccttg tcgccctcct tctctgggcg cagcggggtc ccgcacgagg
     4081 ggcacagcgt gggcatgacg aactctcgct cggtgccgtc tcgcaggtcg acgacggggc
     4141 cgaggatctc gggaatcacg tcaccggcct tgcgcagcac cacggtgtcg ccgatgagga
     4201 cacccttgcg ccgcacctcg tcggcattgt gcagggtggc ccgctccacg gtggaccccg
     4261 ccaccacgac cggcttcatc acgccgaacg gagtcacccg gcccgtgcgt cccacgttga
     4321 ccaggatgtc caggagcttg gtgttgacct cctcgggcgg gtacttgtag gcgatggccc
     4381 agcgcggagc ccgcgacgtc gaccccagct gccgctgcac cgtcagctca tcgaccttga
     4441 cgacgatccc gtcgagctcg tgctccacgc tgtggcggtg ctcgccgaag tagcggacga
     4501 actcctgaac ctcgtcgatg acgtccagta cccggaagtg cttggagatg ggcagccccc
     4561 actcgcgcag cttctcgtac gcctcggact gccgagtcag ctcgagcccg tcgcggaacc
     4621 cgatgccgtg cacgagcatg tgcagcggac ggctggcggt gacgcggggg tccttctgcc
     4681 gcaacgaccc tgccgccgag ttgcgcgggt tggcgaaggg cgccttgcca gcctcgacca
     4741 gggaggcgtt gagctcggcg aacccctcga gcgggaagaa gacctcgccg cggatctcga
     4801 cccgcttggg gtggccggac ccggcgagct ggtgcgggat cccctcgatc gtcctgacgt
     4861 tgtgcgtcac gtcctcaccg gttcgcccgt caccgcgggt gagagcacgc gtcagccggc
     4921 cgttctcgta gagcaggttc acggcgagcc cgtcgatctt gagctcacac agatagtggt
     4981 atgccgcggt gcccgcatcg cgcgtgaccc gcgccgccca ctgggccagc tcctgcgggg
     5041 agaaacagtt gtcgaggctg agcatccgct caaggtggtc gacggcctgg aagtcggtgg
     5101 agaacaccgc gccgccgacc tgctgggtcg ggctctgcgg ggtgcgcagc tcgggatagt
     5161 cggtctccag cgcgttgagc cggcggatca gctcgtcgta ctcgccgtcg ctgatggtcg
     5221 gcgcatcctt gacgtggtag gcgaactggg cgtcgctggc ctgctcggcg agctcggccc
     5281 acgcatggcg ggcttcttgc gggacggtgc tcgagacgat ctcactcacg tccgccatcc
     5341 tgccgcacgc taccgacgac gtgccgcgcc gcggcatacc tcgaagccgt agccaacggc
     5401 gacgggggca ggcaggatgg cgacaagccg tcgattcccc gcagaagtgg agccttcatg
     5461 acgaacctcg ccagcaacct ggtcaccacc tcccgggagc acccggacga cgtggctatc
     5521 aagttcatgg gcaacgacat cagctacggc cagatccacg gcatggccgc ccaggtggcc
     5581 ggctcgctgc gagcggccgg ggtcgagccc ggtgatcggg tcgcgatcat cctgcccaac
     5641 gtcccggcgt ttccggtggt cttcttcggg gcgctgctcg ccggcgcgat cgtcgtgccg
     5701 atgaacccct tgctcaagtc cggggagatc gacttcttct tcaccaactc cggcgccaag
     5761 gtggcgttcg tctggcccga cttcgttgcg gaggccaccg agggcgcccg caactccggc
     5821 acgcggatca tcccctgtgg cccgatgggg cctgccgaag gccagctcga gccgggcgag
     5881 ccgatcgccg tgccggtcga gcgcgacgac aacgacaccg ccatcgtgct gtacacgtcg
     5941 gggacgaccg ggcgacccaa gggcgccgag ctgacccacc gcaacgtcca cctcaacgct
     6001 caccgcagct cggtcgagat ccagcagacc acgtccgccg atgtcgtcat ggggtgcttg
     6061 ccgctgttcc acgtcttcgg gctggtggtg gggctgaacg ccgcggtcat tgctggcgct
     6121 gcgctggcgc tcatccccag gttcgacccg gccgaggcca tcaaggtcat cgggaacgag
     6181 agggtgacca tcatgatggg cgtccccacc atgtatgccg cgatcctcaa ccaccccgac
     6241 tcggactcga tggacacgac gtcgctgcgc acgtgctgct ctggcggttc ggccatgccg
     6301 ctggaggtca tgaaggcgtt cgagagcaag ttcggctgcg tgatcctcga ggggtacggc
     6361 ctgtcggaga cctcgccggt cgcgtcgttc aacatgcccg accgcgagcg caagccaggg
     6421 acgatcggcg tcgcgatccc ggggtgcgag atgaagctcg tcgacctcga aggcaacgac
     6481 gtcccgcccg gtgagggagt cggcgagatc gcgatccgcg gcgacaacgt catgaagggc
     6541 tactggcaga acccggaagc caccgccgag gcgatcccgg acgggtggtt ccgcaccggc
     6601 gacctcgcca cggtcgacga ggaggggtac ttcaccatcg tggaccgcaa gaaggacatg
     6661 atcctgcgcg gtgggatgaa cgtgtacccg cgcgaggtcg aggaggtgct gtactcccat
     6721 cccgatgtcc tggaggccgc cgtggtcgcc gttcccgacg acctgctggg cgaggacgtc
     6781 ggggcagcgg tcgcgctacg gcctgaggcg accgccaccc tcgccgatgt ccagagcttc
     6841 gtgaaggaac ggatcgcggc ctacaagtac ccacgccatc tctggcaggt gtcggagctg
     6901 cccaagggac cgaccggcaa gatcctgcgc cgcgaggtcc acaagcccac cgaggcctag
     6961 ccgagcggtc aggcggctgc ccggcggcgt cggtcgggca gcccgatgac cacagccgag
     7021 accaacacaa tggccgcgcc cagtagctgg ggccaggcca accgctcgtg cagcacgacg
     7081 actccgagga tcacggagac gaccgggatg agataggtga ccgttgtgct gacggtggca
     7141 cccgcaccgc ggacgacgtc gaactgcagc atgtaggcca ggccggtccc caccacgccc
     7201 agcacgagga cgcacatcag cgggagcagc gcgctgccac cggtcgtgtt cgcgtgcccg
     7261 gcccacgggg tggcataggt gtcgcggtgg gccagccacc acaccagcag cacaggaacc
     7321 atcagcgctg agccgaccac gagcagagcg gtaggcatcg agagcccgcc gaggtcggcc
     7381 ttgccgaggt accggcggtt gtaggtccac cccagcccat agcaagcgcc agcaaccaac
     7441 gtcatgccga agccgagcag gtcgggtcga cccgctgagg cccacggttg catgatgacg
     7501 acgaccccga cgaagccgat gaccaccgcc acgagcttgc gcgccgaaag cctgtcgctc
     7561 gggagcaagg ccagggcgaa gaagaccgcc gccagcggcg tggtggcgtt gccgatgccc
     7621 gccagcgccg aggacacacg tgcctcgccg agcgcaaaga ggctgaacgg caaggcggtc
     7681 aggaagatcc cggacaccgc caggtggccc cagacgcgcc gctcgcgagg cagccgacca
     7741 ccggtggcgg ccagcagtcc gagcaggacg accgtcccgg caaagatccg cagtcccgag
     7801 atctgcagcg gggccatcgt acggagcccg accttcatca gcaggaagct ggagccccag
     7861 atgagggcga gcatcaggta cttggcctgc cacggcaccc gggtcgacct ggccggtgcg
     7921 gtcgccggac ggctggtgac aacgctgctc atcgctggtt caactctctg ctcgctcgga
     7981 cagctccacg gccacatcga ccgccgcacg ttgaacgcgc caggcccctg gtggtgtgag
     8041 tccggcgagg ccacacgacg gtgtcgccac cagatcgcga aggccacgca cggacaggcc
     8101 ggcatcctgc cacccacggg tgacagccgc ggccgcggcc ttggccgaac ccgtgccgtc
     8161 tgtcggcagg cagcctgcgt acaggctgac gccgtcctcg acggtggcgg cgatggactc
     8221 ccaccgcggc gcggtcagag cggtggtgtc catggcgacg gcacccacgc cggtggtgcg
     8281 caacagcgga agcggtatgc cgggatcgca acagtgcacg acggtcgctg cgtccggcac
     8341 tgcggcgaga acctcgcgca gcccgtcacg cacgatctgg gggtcgatag gacgaaggtg
     8401 cccgaacccc gacacagtgg gcaggtgtcc ggccagcacg gccggcaacg agggctcgtc
     8461 cagctgcacg acgagggtgg cgccgggcac gagccgcccc acctctgcga cgtgctgccg
     8521 cagaccctct gccaacgagc cgatcaggtc tcggactgct cccgggtcgc tgacggcccg
     8581 ctcgccgcgc gtcagctcga gaccggccag cagcgtccag ggacccgccg cctggagctt
     8641 gaggtcgccc tcgtagccgt cgaaggcttc ggccagctcg tcaaggtcct ggtgccagaa
     8701 cgccgcggtc cgggcggcgt cgtgcccggg gcgctcgacg aaccgccagc cgccgggctg
     8761 gagatccacg tggaggtcga ccaacaggtc ggctgagcgg cccagcatct cggctccggg
     8821 cccgcgagcc ggcagctcgg gcaggtacgg caggtggccg tcgccgagga ggtcacggac
     8881 cccgcgcaac gcctcgcgga tgtccgtgcc cggaagggat ccgataccag ttgcgcgagc
     8941 cacaggccga gcctaaccac gcccaccgac accctcgacc gacaccctcg acgggcagcc
     9001 gattccactc agcggcccgg caccgatcag cgctcgagcc acgtggtggc gatggtggct
     9061 gaccccacca cgcgcgtgcc ctcgtagagg acgacggact gccccggggc aacgccgcgc
     9121 agccgagtcg agaggcgcac ctcgacgtcg tctcccgatg cccaggcctg ggccgggacc
     9181 tcttcaccat gggctcgcac ctgagctccg agcgacacca cgcctcgcgg gggggcgcca
     9241 caccagcgcg cgtggtcgcc acgaatggcg ttgaccccca agagatccgc ggtgccgatc
     9301 gtcacccggt tcgccgccgt gtcgacgtcc accacgtacc gtggctcggc gtcgagcgag
     9361 gaccggtcca gccccagacc ccgccgctga cccaccgtgt aggcatacgc gcccgcatga
     9421 gctcccacca ctgcgccgga cgtcacgtcc acgatctcgc ccggctgctc ccccagccgc
     9481 gaggtgagcc agcccttggt gtcgccatcg gggatgaagc agatgtcatg cgagtcgggc
     9541 ttgctggcga cgtagaaccc gcgctgcttg gcctccgctc ggatgtcggg cttggtcgtg
     9601 tcgcccagcg ggaagaaggc ccgggccagc tgctcggcgt cgaggacgcc cagcacgtac
     9661 gactggtcct tgtcggagtc gaccgcccga tgcagctccc gggtgccgtc ggatcgggtc
     9721 acgacctgcg cgtagtgccc ggtggccacg gcgtcgaagc ccagggccac cgccttgtcg
     9781 agcagcgcgg cgaacttgat ggtctcgttg caccgcaggc acgggttggg ggtgcgtccc
     9841 gccgagtact ccgcgacgaa gtcctccatg acatcgcgct tgaaccgcgc tgccatgtcc
     9901 cagacataga acgggatccc cagcatgtcg gccacccgcc gggcatcgcc cgcgtcctcg
     9961 atcgtgcagc agccacgagc ggactcgcgc agcgtggcag cactttggga cagcgcgaga
    10021 tgcacgccga cgacctcgtg accggcgtcg agcatccgcc cggcggcgac cgccgagtcg
    10081 acgccgcccg acatcgccgc gacgacccgc atcagcccga gaccccgctg gcccgccgag
    10141 cccggtcgat cgccgcgggc agcgccgcga gcagcgcatc cacgtccgcg tcggtcgagg
    10201 tgtggcccag cgtcagtcgc agcgcccccc gcgcggcgcg ctccggaagc cccatcgcga
    10261 gcagcacatg cgacggctgg ggtaccccgg cctggcaggc cgacccggtg gagcactcga
    10321 cccccgccgc gtcgagcagg tagagcagcg agtcgccctc gcagcccggc acgaggaggt
    10381 gcgcgttgcc cggcaggcga cgtatgccgt cacccggctc ccagacgccg cccaccgtga
    10441 tctcgtagcc gaggtctagc gcggagcgga tcagcctgtc acgcaaggca accagacgat
    10501 cggcctccga ggtgagcatc gacgtggcct cctcgatcgc gacagcgaaa gcccggatcg
    10561 ccggcacgtc cagggtcccg ctgcgcagct gccgctcctg gccgccgccg aagctgcgcg
    10621 gagcgaggac cgcgtcacga cgggctacca gcgccccgac cccgagcggg ccgccgacct
    10681 tgtggccggt gatcgtcatc aggtccgcac cgctggcggc gaagtcgacc ggaacatgtc
    10741 cggctgcctg cacggcgtcg gtgtggaacg ggaccccgaa ctcgtgcgcg accgcggcca
    10801 gctgggcgac cggttgcacc gtgcccactt cgttgttggc ccacatcacc gacaccagag
    10861 ccacggactc ggggtccgtc tcgatcgcgg ctcggacggc ctcgacggtg atcaggccgc
    10921 ggctgtccgg ctccacccag gtgaccttgg cgccctcatg ggtgaccagg tgctccacac
    10981 agtccagaac ggcgtgatgc tcgatcgagc tcgacacgat gcggatgcga gcggggtcgg
    11041 actcccgccg ggcggtgaag gtccccgcca cggccaggtt gtcggactcg gtgccacccg
    11101 aggtgaacag gacctccgag ggccgagccc cgagcgcctt ggcgatcccc tcgcgagcct
    11161 cttccaccgt ccggcgcgcg aggcgcccgg aggtatgcag cgacgacgcg ttaccggtga
    11221 tcgccagctg ctccgtcatc gcctgaaggg cagccggaag catcggcgtg gtagcggcgt
    11281 ggtcgaggta ggcgggcacc cgcaaagttt acgcgtcaac tgcctccccc cagtttctga
    11341 ccgatccgtg accacctgcc gtaaccgcac cccccgatac agcgttagac cctgtgacgc
    11401 gccgcgcagc acgtatgccg gtcaccaagc ctcctcagcg agggggcatg aagtccccgg
    11461 agctctggcc agttcgggga cttcgtgttg ccgcggcgct tcgctgggac tgtttcgctg
    11521 agccacgccg acctcgacac agcgcgcccc cggtccagga ccgggggcgc gctgtgtcaa
    11581 ggattcggac tgtgcggcat acgaggaggg cgttcagccc ttggctgtct tgaccgcctc
    11641 ggtggcctgc gggaggacct ggaagaggtc acccacgacc ccgaagtcga cgagctcgaa
    11701 gatcggggct tcctcgtcct tgttgatcgc gacgatggtc ttggacgtct gcatcccggc
    11761 gcggtgctgg atggcgccgg agatgccgca ggcgacgtac agctgcggag acacctgctt
    11821 gccggtctgg ccgacctggc tggtgtgcgg gtaccagcct gcatcgaccg cggcgcggga
    11881 cgcaccaaca gctgcgccga gcgagtccgc gaactcctcg accttggaga agtctccacc
    11941 ggtgccgcgc ccaccagaga ccacgatggc ggcctcggtc agctccgggc gtccggtggc
    12001 ctgcttcggc ttggactcgg tgaccttggc gcccttggcg gcgtcggaga tggtcacctc
    12061 gaacacctcg tcggcggccg caccggcagc ctcctcgggg gcggccgagt ttggcttgac
    12121 ggtcacgatg ggcgtgccct tggtgaccgt ggcctggacg gagaacgagc cggcgaacac
    12181 cgactgggtg gtggctacgc caccgccctc ggcggcctgg acgtcgaccg cgtcggtgat
    12241 cagacccgac tcggtcttga tcgccagacg ggcggcgatc tccttgcccg cggtgttgct
    12301 ggggatcagc acggccgccg cagaggtctt ctcgacgagc tgggccagca gctcagcctg
    12361 cggggccacg aggaactcgg tcacctcggg cgcctcgacg cggtagacct tcgccgcgcc
    12421 gtacttcgcc agggtctcct tggcggcgtc gaacccgtcg ccgacaaaca ccgccgaggg
    12481 ctcgcccagc cggcgggcga tggtcaacag ctctgaggtg gtcttgcgga cctcgccgtt
    12541 ggcgtggtcg accagcacga gtacttcagc cattagagga ttcgctttct ctgggtcttc
    12601 tgaaggtctc tcagatgaac ttctgggcgg ccaggaactc agcgagcttg gtgccgccgt
    12661 cgccctcgtc ggtcacgatc tgaccctgct cacgcggggg tcgcttggtg aacgaggtga
    12721 ccttcgtcca ggcggcgtcc agtcccacct tcgagctgtc gatgccgagg tcagcgagcg
    12781 accaggtctc caccggcttc ttcttggcgg ccatgatccc cttgaaggag gggtaccgcg
    12841 gctcgttgat ctggtcggtg accgacacca gcgcgggcag gctcgcgacg atcgtctccg
    12901 aggccgcatc gccgtcgcgg cggatcgtga cggtcgtgcc gtccacggtc agctcggagg
    12961 cgaacgtcac ctgaggcagc ccgagacgct cggcgagcat cgccgggacc acgctcatgg
    13021 tgccgtcagt ggacgccatg cccgtgatga ccagatcggc ggggccgatc ttggtgatcg
    13081 cctcggccag gaccagagag gtcgccaccg cgtccgagcc atggatggcc tcgtcgttga
    13141 catggaccgc cttgtcggcg cccatctgca gggccttctt caaggcatcg gcggcctggt
    13201 cggggccgac ggtcaccacg gtgacctcgc cctcccctgc ctcgacgatc ttcaaggcct
    13261 cctcgacggc gtactcgtcg agctcggaga gcagaccgtc gacacccacc cggtcggtgg
    13321 tgttgtcgga gtcgttgaac gtgcgatcgg actgtgcatc cggcacgtat ttcacgcaga
    13381 cgacgatgtt catgcg
//
LOCUS       DASYFY010000210         2628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_435641, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000210 DASYFY010000000
VERSION     DASYFY010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435641"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VGN19_04030"
     CDS             complement(<1..227)
                     /locus_tag="VGN19_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195086.1"
                     /translation="MNAFEVPVEVLVEGDRADEVTQRLPSLWEFCGPADDIAAEATVL
                     VTFDHDPQVLARAREAGRLTRDRRDDLLQVLT"
     gene            311..1828
                     /locus_tag="VGN19_04035"
     CDS             311..1828
                     /locus_tag="VGN19_04035"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HEV7195087.1"
                     /translation="MELRDYLVVLRAYWRGVTVFVLLGVALAAGASLAQHKEYQADAS
                     GFVSSGTSASPSEASVGDSLAKSRAASYVDLAKSRATAQTVIDTLGLKADPSGLIGSV
                     TVTQPLDTVLIKISARASTPRAAQQLADAWVQALKTQVDQVENPTRSAVQSLHVVPIE
                     SAELPTAPISPNTKRNVALGFVAGLLLGVGYAVLRSQLDRKLRRVEEIERQFGVTVAG
                     AIPLSSAMARKKGDLLPLVVLNGPRKVHDPVHSAEAFLKLRTNLQFMDIDNPPRVIVV
                     TSPMPGDGKSTVAANLAAALSMSDRRVVLIDGDLRRPVVAESFGLVEGAGLTDVLIGR
                     VDFADVAQRVQALPNLLVLAAGRTPPNPSELLGSKAMRRLLGWLADRGYTVIIDAPPL
                     LPVTDAAVLTASADGALITISAGRTMDTHLAAALGSLHAVQGHTLGVVLNRVPPKDAG
                     AGYYGGYYPTAEPRQQPPMSSSTARPQVAKPPTAKPPTAKPVPVKAAKPTTRAMV"
     gene            complement(1835..>2628)
                     /locus_tag="VGN19_04040"
     CDS             complement(1835..>2628)
                     /locus_tag="VGN19_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase S10"
                     /protein_id="HEV7195088.1"
                     /translation="DFDFKNDRAFVDYLPTYAAVAHYHGKHGRKSLKTVLAEAEAYAA
                     RDYPWALSRGNRLTAAERAEHVGRLASLIGLSQEYVDRADLRIEHVRFFTELRRDERL
                     AVGRLDARFTGPLAHGNAETWDADPSYDAISGPYAAAWNHYVREELGYANDLPYTQIS
                     SVANQEWSYKEFEAKPVDVSAQLARAMRANPDLLVHIAYGYHDGATPYYGAQDVVAHL
                     DIPPRLHDNIEHAYYEAGHMMYVHEPSRMQQSRDLAAFVTRASGT"
BASE COUNT          398 a          903 c          906 g          421 t
ORIGIN      
        1 gtcaggacct ggaggaggtc gtctcggcgg tctctggtca gtcgtccggc ttcccgggcg
       61 cgagccagca cctgcgggtc gtggtcgaac gtgaccagca ctgtggcctc ggcggcgatg
      121 tcgtccgcgg gcccgcagaa ctcccacaac gagggcagtc gctgcgtcac ctcgtcggca
      181 cggtcgccct cgaccagcac ctcgacaggc acctcgaaag cgttcaccac caatcggctc
      241 ggcgcgttct gtgcgcatcg tgggtcggag ccggtcacag cctgaaggct agagcagagg
      301 ggagctcgtc atggagctga gggactatct ggtcgtgttg cgcgcgtact ggcgcggtgt
      361 cacggtcttc gtgctgctgg gtgttgccct ggccgcgggg gccagcctgg cgcagcacaa
      421 ggagtaccag gcggatgcca gcggcttcgt cagctcgggg acgagcgcct ctccgagcga
      481 ggcgtcggtc ggggactcgc tggccaagtc tcgggccgcc tcgtacgttg acctcgcgaa
      541 gtcgcgcgcc acggcccaga cggtcatcga caccctcggt ctcaaggccg acccgtccgg
      601 cctcatcggg agtgtgacgg tcacgcaacc gctggacacc gtgctgatca agatcagcgc
      661 cagagcctcc accccccgtg ctgcccaaca gctcgccgat gcctgggtcc aggcgctcaa
      721 gactcaggtc gaccaggtcg agaaccccac acggtcggcg gtccagtcgc tgcatgtcgt
      781 cccgatcgag tccgccgagc tgccgaccgc accgatctcg cccaacacca agcgcaacgt
      841 cgcgctgggc ttcgtggcag gccttctgct cggagtcggg tatgccgtgc tgcgcagtca
      901 gctcgaccgc aagctgcggc gcgtcgagga gatcgagcgc cagttcggcg tcaccgtcgc
      961 cggggccatt ccgctgagct cggccatggc acgtaagaag ggtgacctcc tacccctggt
     1021 cgtgctgaac ggtccgcgca aggtccatga ccccgtccac tcggcagagg ccttcttgaa
     1081 gctgcgcacc aacctgcagt tcatggacat cgacaacccg cctcgcgtca tcgtcgtgac
     1141 gagccccatg ccgggcgatg gaaagtccac ggtcgcggcg aacctggccg cagcgctgtc
     1201 gatgtcggac cgtcgagtcg tcctgatcga cggagacctg cgtcggcccg tggtggccga
     1261 gtcgttcggc ctggtggagg gcgccggcct gacggatgtc ctgatcggcc gggtggactt
     1321 cgccgacgtc gcgcaacggg tacaggcgct gcccaacctg ctggtgctcg cggctggccg
     1381 cacgcccccg aaccccagcg agctgctggg ttcgaaggcg atgcgccggc tgctcggctg
     1441 gctcgccgat cgcggctaca ccgtcatcat cgatgctccg ccgctgctgc ccgtgaccga
     1501 cgcggcagtc ctgaccgctt cggccgacgg ggcgctgatc accatcagcg ccggccgcac
     1561 catggacacc catctggccg cggccctggg cagcctccat gcggtccagg gccacacgct
     1621 cggggtcgtg ctcaaccggg tgccgccgaa ggacgcgggt gccgggtact acggcgggta
     1681 ctacccgacg gccgagccgc ggcagcaacc ccctatgtcg tcgtcgaccg cgagaccgca
     1741 ggtcgcgaaa ccgccgaccg cgaaaccgcc gaccgcgaaa ccagttccgg tcaaggcagc
     1801 caagcccacc acgcgcgcga tggtgtagct ggactcaggt cccgctggcg cgcgtgacga
     1861 aggcggccag gtcgcggctc tgctgcatcc ggctgggctc gtggacgtac atcatgtggc
     1921 ccgcctcgta gtaggcgtgc tcgatgttgt cgtgcagccg tggcgggatg tccaggtgcg
     1981 cgacgacgtc ctgcgcgccg tagtagggcg tggccccgtc gtggtagccg taggcgatgt
     2041 ggaccaggag gtcggggttg gcccgcatcg cccgggcgag ctgcgcgctg acatcgacgg
     2101 gcttggcttc gaactccttg tacgaccatt cctggttcgc caccgaggag atctgggtgt
     2161 acggaaggtc gttggcgtag ccgagctcct cgcgcacgta gtggttccag gccgcggcat
     2221 acggcccgct gatcgcgtcg tacgacgggt cggcatccca ggtctcggca ttgccatgag
     2281 ccagcggacc cgtgaagcgc gcatcgagcc ggcccacggc caagcgctcg tcgcgacgca
     2341 gctcggtgaa gaaccgcaca tgctcgatcc gcaggtccgc acggtcgacg tactcctggc
     2401 tgagcccgat cagcgacgcc agccggccca cgtgctcggc ccgctcagcg gcggtgagcc
     2461 ggttgccgcg tgacagggcc cagggatagt cgcgggcggc atacgcctcg gcctcggcga
     2521 gcacggtctt gagggacttg cggccgtgct tgccgtggta gtgagccacc gcggcatacg
     2581 tcgggaggta gtccacgaac gcgcggtcgt tcttgaagtc gaagtcga
//
LOCUS       DASYFY010000211         2310 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1697164, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000211 DASYFY010000000
VERSION     DASYFY010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697164"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..571
                     /locus_tag="VGN19_04045"
     CDS             89..571
                     /locus_tag="VGN19_04045"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEV7195089.1"
                     /translation="MFSIRSSPLPADLGLLAARLGLAWIFIYYGGGKLFGAFNGPGIH
                     GTSLYMSNVAHLHPGGLFAVLGGLVEFGSGCAMALGLLARLAGVALVGDMVMAMITVT
                     WATGINNSTNPPGYQLNLALAILALVVALLGAGRFSLDAVIGQQLAARRPAQEGNGGG
                     "
     gene            576..1223
                     /locus_tag="VGN19_04050"
     CDS             576..1223
                     /locus_tag="VGN19_04050"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HEV7195090.1"
                     /translation="MPGVARVQHALPPRSQQIVRVSANIVGAAGAAYFAYVTLSAYLH
                     THRPIGVLFFAQQAVVVVAYLVRRPASAVTLRFGDWLLAFGGTFSPVLLRPDGAHPQW
                     GLTAGLALQLVGVIIALWSLTTLGRSFGFAAADRGLVSRGPYAIVRHPVYAAYVLLLA
                     GYLLQSVSLRNALVVLLTMGCDVGRIRAEERVLAQNPAHPAYCRRVRWRMLPGLW"
     gene            complement(1248..1970)
                     /locus_tag="VGN19_04055"
     CDS             complement(1248..1970)
                     /locus_tag="VGN19_04055"
                     /inference="COORDINATES: protein motif:HMM:NF015596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195091.1"
                     /translation="MTATDAVHARTFRSGVAYRRLVRRGLVPAAVLAGSLGATTSAGA
                     AQPKAVVTTAKVTGLGTVLVASHRVLYANANDPKGRSTCTGGCATIWPPLIVSSKTAH
                     HLGHIAGLGTIKRSNGKLQVAIHGHALYFNAGDHSLSQANGQGFLNNWFAVHTNGSLD
                     RTTISAPMATVPSTSQPASSSSSSTTRPTSTPSGPAPTSPPPTSPPPTSPPTTSPPPP
                     TTTTAPPTTTTTTSGGGGGVGF"
BASE COUNT          303 a          786 c          822 g          399 t
ORIGIN      
        1 gggacgcatc cccgactctc gacgcctgat ggctacaacc tccacatttt cgagccccgc
       61 gaggcaagca cgtcacttgc tcgggtgggt gttcagcatc cggtcgtcgc cgctgccggc
      121 cgacctgggc ttactggccg cacgcctcgg actggcttgg atcttcatct actacggcgg
      181 cggcaagctc ttcggcgcgt tcaacggtcc gggcatccac gggacgtcgc tctacatgtc
      241 caacgtcgca cacctgcacc cggggggcct cttcgccgtg ctcgggggtc tcgtcgagtt
      301 cgggagcggg tgcgccatgg ccttgggcct cctcgcccgc ctcgccggcg tcgcgctggt
      361 cggggacatg gtgatggcga tgatcaccgt gacgtgggca acaggcatca acaactcgac
      421 gaacccgccc ggctaccagc tcaacctggc cctggccatc ctcgcgctgg tcgtggcgct
      481 gctcggggcc ggccgcttca gcctcgacgc cgtgatcggg cagcagctcg ccgctcggcg
      541 ccctgcccaa gagggcaacg gcgggggctg acgtcgtgcc cggtgtcgcg cgcgtccagc
      601 acgcgctgcc gccgcgctcg cagcagatcg tccgggtctc ggcgaacatc gtcggcgcgg
      661 cgggcgcggc gtacttcgcc tatgtgacgc tgtcggcgta cctccacacc catcgcccca
      721 tcggcgtcct cttcttcgcc cagcaggcgg tggtggtcgt tgcgtatctc gtccgtcgcc
      781 ccgcgagcgc ggtgaccctg cgtttcggcg actggctgct tgcgttcggt gggacgttca
      841 gcccggtgct cctccggccc gacggcgcgc acccccaatg gggcctcacc gccggtctgg
      901 ccctgcaact cgtcggcgtg atcatcgccc tctggtccct gaccaccctc gggcggtcgt
      961 tcgggttcgc ggccgcggac cgcggcctgg tgagcagggg cccctacgcg atcgtccgcc
     1021 atccggtgta cgcggcctac gtgctgctgc tggcgggcta cctgttgcag agcgtctcac
     1081 tccgcaatgc gctcgtcgtg ctcttgacca tgggctgtga cgtcggacgc atccgcgccg
     1141 aggagcgggt cctggcgcaa aacccggcgc acccggccta ctgccggcgg gtccgctgga
     1201 ggatgctgcc gggcctctgg taagggaccc ctgaccgaac cggacgatca gaacccgacg
     1261 ccgccgccgc cacccgacgt ggtcgtcgtg gtggtcggcg gggcggtggt cgtcgtgggg
     1321 ggaggcggcg acgtggtcgg agggctggtc ggcggcggac tggtgggcgg cgggctggtc
     1381 ggtgctgggc cggacggggt ggatgtcggc cgcgtcgtcg acgaggacga gctcgacgcc
     1441 ggctgtgacg tcgagggaac ggtggccatg ggtgccgaaa tcgtcgtgcg gtcaaggctg
     1501 ccgttggtgt ggacagcgaa ccagttgttc aggaagccct gtccgttggc ttgcgacagc
     1561 gagtggtcac ccgcgttgaa gtagagggcg tgtccgtgaa tggcgacctg gagcttgccg
     1621 ttggaccgct tgatggtccc cagtccggcg atgtgaccca ggtgatgcgc cgtcttggac
     1681 gagacgatca gcggcggcca gatggtggcg cagccaccgg tgcaggtgct gcggcccttc
     1741 ggatcgttgg cattcgcgta gaggacccga tgtgacgcca cgaggaccgt gccgagcccg
     1801 gtgaccttcg ccgtcgtgac caccgccttc ggctgggccg cgcccgcgga ggtcgtcgca
     1861 cccagagagc ccgccaagac ggcggccggc acgaggccac gacggacgag gcggcggtac
     1921 gcaaccccgg accggaacgt tcgggcgtgg acggcatcgg tcgctgtcat cgggcggagt
     1981 cctccctcgt tgctggcgcg tggtatcagc agtgactacg ggccagggct ccagagggat
     2041 gggtcgggat tgggagatgc cgcgaccgga caacccctat ggaggacgcc gacgccacca
     2101 cagagcgccc ggtgcaggtc gagggctcag ccgaaagtca tccgcgctgc ctgcgaaccg
     2161 gtataaccgc gcttgcgacg gggggtctac ttcttcttcc tggccgacgc ctcattcagc
     2221 gccacggcgt ctcggaacag ctccttgaac gccttttcgt cgagcttgtc tccctcgttc
     2281 aggtcgatcg cacgccggac ggccccttcg
//
LOCUS       DASYFY010000212         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_173792, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000212 DASYFY010000000
VERSION     DASYFY010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173792"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..>1669
                     /locus_tag="VGN19_04060"
     CDS             265..>1669
                     /locus_tag="VGN19_04060"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEV7195092.1"
                     /translation="MATPKSELLPVLPMDDVVVLPHMTVTLAVEGDDQKAAIEAARQG
                     SRMILLVPRIEGKFGTIGTVGRLGESAELPTGAEAFMIRGDYRARLGGGQADIAGALF
                     VQADPIADPEPPTEASLELAREYRALLENLVESRGVPQVVQFLRAAKTPGHLADLAGY
                     SPDLSTEQKLEVLETIDLEQRLAQLIKWTKSILADASLKEKIRSDVAEGMEKTQREFL
                     LRQQLEAIKKQLNEGGSDVVSTYRERVAKAEMPEGVLTEVNRELDRLERTSEQNPEYG
                     WIRTYLDWMLDIPWNVRSEDNYDLVEARRILDEDHTGLSDVKDRIIEFLAVRKLRKER
                     GLEVLGGRGSGAIITLVGPPGVGKTSLGESVARALGRKFTRVSLGGIRDEADIRGHRR
                     TYVGALPGRIVRALKEAGTKNPVIMLDEIDKVGNDWRGDPSAALLEVLDPAQNNTFRD
                     HYLEVDLDLSEVLFIPTA"
BASE COUNT          291 a          585 c          554 g          239 t
ORIGIN      
        1 atcgtgacga agccgacctg ctttcgcttt cccatcgcct gatcctatac gcgtcctggc
       61 cccccacccc gtggggaggt ggccaccggt cgcgcagcga ccgctggtcg aaggggcggt
      121 ccgatttgct cccggcgtgc tgcgggcaac tgaaccgacc gcgtcgcccc atccggcgct
      181 cacgcgccga cctccccgca tggcggggag gtgaattggc gtcatgtgtg ggaattgcct
      241 gggctgggta aacgtttctt cgacatggca acaccgaagt ccgagctact ccccgtcctc
      301 cccatggacg acgtcgtcgt cctccctcac atgacggtca ccctcgctgt cgagggcgat
      361 gaccagaagg cggcgatcga ggcggcccgc cagggcagcc gcatgatcct gctcgtgccc
      421 cgcatcgagg gcaaattcgg caccatcggc accgtgggcc gcctgggcga gtccgccgag
      481 ctcccgaccg gcgccgaagc attcatgatc cgcggcgact accgcgcccg gctgggcggc
      541 ggccaggccg acatcgccgg cgccctgttc gtgcaggccg acccgatcgc cgaccccgag
      601 cccccgaccg aggcctcgct ggagctggcc cgcgagtacc gcgccctgct ggagaacctg
      661 gtcgagtcca ggggcgtccc gcaggtcgtg cagttcctgc gcgccgcgaa gacccccggc
      721 cacctggccg acctggccgg ctactcgccg gacctgagca ccgagcagaa gctggaggtc
      781 ctggagacca tcgacctcga gcagcggctc gcccagctga tcaagtggac gaagtccatc
      841 ctggcggacg cttcgctgaa ggaaaagatc cgcagcgatg tcgccgaagg catggagaaa
      901 acgcagcgag agttcctcct gcgccagcag ctcgaagcca tcaagaagca gctgaacgag
      961 ggcggcagcg acgtcgtgtc gacctaccgc gaaagggtcg ccaaggccga gatgcccgaa
     1021 ggcgtgctga ccgaggtgaa ccgcgagctg gaccgcctgg agcggaccag cgagcagaac
     1081 cccgaatacg ggtggatccg cacctacctg gactggatgc tggacatccc ctggaacgtg
     1141 cgctccgagg acaactacga cctggtcgag gctcgccgga tcttggacga agaccacacg
     1201 ggcctctcgg acgtgaagga ccgcatcatc gagttcctgg ccgtgcgcaa gctgcgcaag
     1261 gagcgcgggc tcgaggtgct cggcggacgt ggatcgggcg cgatcatcac gctggtcgga
     1321 cctccgggcg tgggcaagac ctcgctgggc gagtcggtcg cccgcgcgct gggacgcaag
     1381 ttcacgcgcg tctcgctggg cggcattcgc gacgaggctg acatccgggg ccaccgccgc
     1441 acctacgtcg gcgcccttcc gggccgcatc gtgcgcgccc tcaaagaggc cggcaccaag
     1501 aaccctgtga tcatgctgga cgagatcgac aaggtcggca acgactggcg gggcgacccg
     1561 tcggccgcgc tgctcgaggt cctcgacccg gcgcagaaca acaccttccg cgaccactac
     1621 ctggaggtcg acctcgacct gtcagaggtg ctgttcatcc cgacggcca
//
LOCUS       DASYFY010000213         1896 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1802398, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000213 DASYFY010000000
VERSION     DASYFY010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1802398"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..174)
                     /locus_tag="VGN19_04065"
     CDS             complement(<1..174)
                     /locus_tag="VGN19_04065"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HEV7195093.1"
                     /translation="MEPVLDNAVPTTGVGATRHTPLVIAHRGSSLAEPEHTLKAYLRA
                     IDEGADALECDVRL"
     gene            242..727
                     /locus_tag="VGN19_04070"
     CDS             242..727
                     /locus_tag="VGN19_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7195094.1"
                     /translation="MSVKLPAFQTLVDAHWRDVARLAHALAGPVDGDDVAQQAWTQAL
                     TAYPGLKSSANLRGWLLTITHRCAMDVHRGRARRALPHDDPAALAPVPTAPAADASLP
                     DGPLWARVAALPLRQREAVVLKYVGDLDHPTIAVALGTTPAMSRRLVSDALATLRKDL
                     P"
     gene            724..1314
                     /locus_tag="VGN19_04075"
     CDS             724..1314
                     /locus_tag="VGN19_04075"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEV7195095.1"
                     /translation="MTDLTDPVELLRSFSPDLRAPEFEHSDVSYVVEDTLVGRILLAR
                     NASGALVASSFAPDVASEDRLLARLSERISPRVLRQPQALDEVRAELESFLAGRTRAF
                     TVRTDLVLASDFQRQVLPRLASSVGYGQRATYGQLAALLNRPTAARAVGAALGANPLC
                     VVIPCHRVVAANGALTGYAGGLAAKEYLLGLEGAAR"
     gene            1319..1687
                     /locus_tag="VGN19_04080"
     CDS             1319..1687
                     /locus_tag="VGN19_04080"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEV7195096.1"
                     /translation="MSDAPGNRNPAVDAWFETYTNPQAALVQQVRSLVLAVSPKVTEA
                     IKWQAPTFLYRGNIASFYPKSKQHVSLMFHQGASLPDPTGLLEGEGDTSRVAKFADAD
                     DLATKAEALQGLVRAWITAH"
     gene            complement(1715..>1896)
                     /locus_tag="VGN19_04085"
     CDS             complement(1715..>1896)
                     /locus_tag="VGN19_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006503538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195097.1"
                     /translation="EVDDIESVPTSAVATVLDRKPQSLSPARDALLKKGLIYSAERGR
                     IAFTVPHFGRYLRTT"
BASE COUNT          267 a          679 c          650 g          300 t
ORIGIN      
        1 caggcgcaca tcgcattcga gcgcgtcggc cccttcgtcg atcgcccgca ggtacgcctt
       61 gagcgtgtgt tccggctcgg caagactcga gccacggtgg gcgatcacga ggggggtgtg
      121 ccgggtcgcc ccgaccccgg tcgtggggac ggcgttgtcg agcacgggct ccatgcttcc
      181 acacgtcgat ctccggtgcg gcacgatggc acactcacaa cacagggagg tcaggcgttc
      241 gatgagtgtg aagctgcccg ccttccagac cctggtcgac gcccattggc gcgatgtcgc
      301 ccggctggcc catgccctcg ccgggccggt ggacggcgat gacgtggcgc agcaggcgtg
      361 gacccaggcc ctgacggcct acccggggct caagtcatcg gccaacctgc gcgggtggct
      421 gctcaccatc acgcaccggt gtgcgatgga cgtgcaccgc ggacgggcgc ggcgagcgct
      481 gccgcacgat gatccggcgg cgctggcccc tgtgcccact gcccctgcag cggacgcgtc
      541 gctgcccgat ggcccgctgt gggctcgggt ggccgcgctg ccactgcggc agcgcgaggc
      601 cgtcgtcctc aagtacgtcg gcgacctcga ccaccccacg attgccgtcg ccctcggcac
      661 gaccccggcc atgagccggc gcctcgtgag cgacgccctc gcgacccttc gtaaggacct
      721 gccgtgactg acctgaccga tcccgtcgag ctgctgcgct cgttctcccc tgaccttcgc
      781 gcaccagagt tcgagcactc cgacgtctcg tacgtcgtgg aggacaccct ggtcggccgg
      841 atcctgctgg cgcgcaacgc ctctggggct ctggtcgcct cgtccttcgc gcccgacgtg
      901 gcgtcggagg accggctgct ggcccggttg agcgagcgca tctcaccgcg ggtgctgcgt
      961 cagcctcagg cgctggacga ggtgcgggcg gagctggagt cgttcctggc cgggcgaact
     1021 cgcgcgttca ccgtgcggac cgacctcgtg ctggcctcgg acttccagcg ccaggtcctc
     1081 ccccggctcg cctcgagcgt gggctacggg cagcgggcca cctacggtca gctggccgcc
     1141 ctgctcaacc ggcccacggc ggcgcgggcc gtgggcgcgg cactgggtgc caacccgctg
     1201 tgcgtggtca tcccctgtca ccgcgtggtc gccgcgaacg gcgccctgac cgggtatgcc
     1261 ggtgggctgg ccgcgaagga gtacctcctg gggctggaag gtgcggcacg atgagtcgat
     1321 gagcgacgca ccaggcaacc gcaaccccgc cgtcgacgcg tggttcgaga cgtacaccaa
     1381 cccccaggct gccctcgtcc agcaggtccg ctcgctcgtg ctggcagtct cgccgaaggt
     1441 cacggaagcc atcaagtggc aggctccgac gttcttgtac cgcggcaaca tcgcgtcgtt
     1501 ctatcccaag tcgaagcagc acgtctcgct gatgttccac caaggagcgt cgcttccgga
     1561 ccccaccggc ctgctggagg gtgaaggcga cacctcgcga gtggccaagt tcgccgacgc
     1621 cgacgacctc gccaccaagg cggaagcgtt gcaggggctg gtccgcgcct ggatcacggc
     1681 ccactgactg gctctgcgcc ggacgtgtcg gaggtcaggt cgtgcgcagg tatcggccga
     1741 agtgcggcac ggtgaaagcg atccggccac gctccgccga atagatcagc cccttcttga
     1801 gcagggcatc cctggccgga gacagggact ggggcttgcg atccagcact gtggcgactg
     1861 cggacgtcgg caccgactcg atgtcgtcga cctcct
//
LOCUS       DASYFY010000214         4292 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1592282, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000214 DASYFY010000000
VERSION     DASYFY010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4292
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1592282"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VGN19_04090"
     CDS             complement(<1..665)
                     /locus_tag="VGN19_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-like domain-containing protein"
                     /protein_id="HEV7195098.1"
                     /translation="MTAPVRAASRLRAPELAGRGWLNTGGRALSLEDLRGRIVVLDFW
                     TFCCVNCLHVLDELRPLEEKYADSLVLIGVHSPKFEHEADPDALAAAVERYAVHHPVL
                     DDPALTTWQAYTARAWPTLVVVDPEGYIVASMSGEGHAHGLAVLVEELIEEHRAKGTL
                     REGDSPYAAPEPADTALRFPGKAAALPDGSFLVSDTTHHELVWLDPDLATERQRFGGV
                     GVLA"
     gene            complement(662..1417)
                     /locus_tag="VGN19_04095"
     CDS             complement(662..1417)
                     /locus_tag="VGN19_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEV7195099.1"
                     /translation="MSERISRVAELVRAQAGHDLIVLPELWAPGGFSYREWADRAQPI
                     DGPIGAAMSAAARDAGAMLHAGSIVERPSSGEVGSDGHGLWNTSLVYGPDGGLVAAYR
                     KIHRFGFGSGELTLMDPGEDIVLVDLPAGAGKAGLSTCYDLRFPELYRRQLDEGAVAF
                     VVPAAWPAARVRHWTLLAHARAIENQCVVIACNTAGTHAGTAMGGHSQVVSATGEALA
                     MAGTAQEVLSVEVDMNAVTTWREQFPVLRDRRL"
     gene            complement(1510..3489)
                     /locus_tag="VGN19_04100"
     CDS             complement(1510..3489)
                     /locus_tag="VGN19_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006504161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEV7195100.1"
                     /translation="MSLPSTTRSRLPGVVLVLAGLVALPLMAALGQAAAAPVIGDPGA
                     FVRWGLLYAKTVQDLAAAATVGLLIHAAFLVPETTRTRRRLTATRAAAVTAALWAVTG
                     VAGAVLSMADLIGIPVSDPSFGRQFTTFAFSLEQTRVILIMAIGAAVVAAGALLARGR
                     VAMVWLAVLSVASLLPLALTGHAAGSGNHATAVNALAVHLIAVSVWVGGVLALAITGP
                     TLGRDLAPTARRFSVLAGWCFGAVGLSGVLSATLRLTGWSDLGSRYGALILVKSVALL
                     ALGYAGWRHRRALLARLDGDKATPAFVRLLLVELAVMGLAVGTAVALAHSAPPTHDST
                     VGDASPAFALTGYPAPPALDSSSWFTAWRTDWLWLGIAVVAVALYLGGVWRLQRRGDA
                     WPIHRPILWVLGWAVFVYATCGAPGVYGAVMFSAHMVMHMVIAMMVPLLLVPGAPILL
                     ALRTLPARTDKTWGPRELILQVVHSRVLRAFSNPVVAAALFFLSLVVFYYSPLFELAL
                     RTHTGHVLMILHFLLTGYLFTWVLVGIDPGPKKWPPLMLLVILFATMSFHAFFGVVMT
                     GSTTQLAPGFFDVIHLPWLTQPLQDQHDAGAIAWGIGEAPTVMLTLMVVIAWVRSDRA
                     ETERSDRQADRDGGAELIAYNARLAQLKQRSERRS"
     gene            3517..>4292
                     /locus_tag="VGN19_04105"
     CDS             3517..>4292
                     /locus_tag="VGN19_04105"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEV7195101.1"
                     /translation="MPLHPAAPEDLVGLVAAYQQTIQAVVDLGRSCGDADFDLPTACP
                     GWTVKDQISHVVGLESWLHTGDVPRVSVPEYAHIRHEAGQFVERSVEQRRSMVGSKVV
                     AELEVVAAKRIEQFGAPEMTLETVVRGAWGPAPAGESLRLRILDIWTHEQDIRQALGR
                     PGNLDSGGAAVFMDVLFAALPKLVARNAGIEPGNVVIFDVTGPIMGRAGIWVEEGEDG
                     GKPRGIPLFSGVAHDGDPRDVFTTITLSTDALTRRAAGRGS"
BASE COUNT          742 a         1514 c         1466 g          570 t
ORIGIN      
        1 gccagcaccc cgaccccgcc gaaacgttgt cgctcggtcg cgagatccgg atcgagccag
       61 acgagctcgt ggtgggtcgt gtcggacacc aggaaggagc cgtccggcag cgccgcagcc
      121 ttccccggga acctcaaagc ggtgtcggca ggctcgggcg cggcatacgg tgagtcgcct
      181 tcgcgcaacg tgcccttggc gcggtgctcc tcgatgagct cctcgaccag gaccgccagc
      241 ccgtgcgcgt gtccctcacc ggacatcgac gccacgatgt aaccctcggg atccacgacg
      301 accagcgttg gccaagcccg ggcggtgtag gcctgccacg tggtcagggc cgggtcgtcg
      361 agcacgggat ggtgcacggc gtaccgctcg acggcggcag cgagcgcgtc agggtccgcc
      421 tcatgttcga acttcggcga gtggacgccg atcaggacca gcgagtcggc gtacttctcc
      481 tccaacggcc gcagctcgtc caggacgtgc aggcagttga cgcaacagaa cgtccagaag
      541 tcgagcacca cgatgcgccc acgcaggtcc tccagcgaca gagcgcgtcc ccccgtgttg
      601 agccagccac ggccggcgag ctcgggcgca cgcagtcgtg acgccgctcg cacaggtgcc
      661 gtcacagccg ccggtccctc agcaccggga actgctcacg ccaggtcgtc accgcgttca
      721 tgtcgacctc aacgctgagc acctcttgag cagtcccggc catggccagg gcctcaccgg
      781 tcgcgctgac cacctgcgaa tgcccgccca tcgcggtccc agcgtgggtt ccagccgtgt
      841 tgcaggcgat gacgacgcac tggttctcga tcgcgcgcgc atgggcgagg agcgtccagt
      901 gccggacccg agccgccggc caggcggcag gcacgacgaa cgcgacagca ccctcgtcca
      961 gctgccggcg atacagctct gggaacctca ggtcgtagca cgtcgacaac cccgccttgc
     1021 cggcgccggc gggcaggtcg accagcacga tgtcctcgcc ggggtccatg agcgtgagct
     1081 caccggagcc gaacccgaac cggtgaatct tccggtatgc cgcgacgaga ccgccgtccg
     1141 ggccgtagac gagcgaggtg ttccagagcc cgtgcccatc ggacccgacc tcgccgctgg
     1201 agggtcgctc gacaatcgat ccggcgtgca gcatcgcgcc ggcgtcccgg gcggcggccg
     1261 acatggccgc gccgatcggt ccgtcgatgg gctgggctcg gtcggcccac tcgcggtagg
     1321 agaaccctcc cggcgcccac agctcaggca gcacgatcag gtcgtgaccg gcctgcgccc
     1381 tgaccagctc ggcgacccgc gagatccgtt ccgacatggg ttcgtcgtcg ccatacgcga
     1441 cctggaggac tgcgaccttg attgctggga ccgcgcttgt tgggaccgcg cttgttgggg
     1501 catccatact tagctccgcc tctccgagcg ctgcttcagc tgtgccaatc gtgcgttgta
     1561 agcgatgagc tcagcaccgc cgtcgcggtc ggcctgccgg tcgctccgct cggtctccgc
     1621 gcggtcgctg cgaacccagg caatcaccac catcagggtc agcatcacgg tcggtgcctc
     1681 gccgatcccc caggcgatcg cacccgcgtc atgttggtcc tgcagcggct gggtcaacca
     1741 gggcaggtgg atcacgtcga agaaccccgg cgcgagctgg gtcgtgctgc cggtcatcac
     1801 cacgccgaag aacgcgtgga acgacatggt ggcgaacaag atgaccaaca gcatcaacgg
     1861 cggccacttc ttcggccccg ggtcgatgcc gacgagcacc cacgtgaaca ggtacccggt
     1921 gagcaggaag tggaggatca tcagcacgtg gccggtgtgg gtgcgcaggg ccagctcgaa
     1981 cagcggcgag tagtagaaga cgaccaggct gaggaagaac agggctgccg cgacgacggg
     2041 gttggagaag gcgcgcagaa cccgggagtg gacgacctgc aggatcagct cgcgcggccc
     2101 ccacgtcttg tcggtgcgcg ccggaagcgt tcgcaacgcc aagaggatcg gcgccccggg
     2161 caccagcagc agcggcacca tcatggcgat caccatgtgc atgaccatgt gcgcggagaa
     2221 catgaccgcg ccatagacgc cgggcgcccc gcaggtcgca tagacgaaca ccgcccagcc
     2281 gaggacccac aggatgggcc ggtggatggg ccacgcatcc ccgcgacgct gcagccgcca
     2341 tacgccgccg agatagaggg ccacggcgac gacagcgatg ccgagccaca accagtcggt
     2401 gcgccaggcc gtgaaccagc tcgaggaatc cagcgccggc ggggccgggt agcccgtcaa
     2461 cgcgaaagcc ggcgaagcat cgccgacggt cgagtcatgc gtgggcgggg cgctatgagc
     2521 cagtgccacg gcggtcccga cggccagtcc catcacagcg agctcgacaa gcagcagccg
     2581 gacgaacgcg ggcgtcgcct tgtcgccgtc gaggcgagcc agcagcgcgc gccggtgccg
     2641 ccagccggca taacccagcg cgagcagagc cacagacttg accaggatca gcgcgccgta
     2701 gcgactgccg aggtcgctcc agccggtgag gcgcagggtg gcactgagca cccccgacag
     2761 acccactgcg ccgaaacacc acccggcgag taccgagaat cgtcgcgcgg tcggggccag
     2821 atcgcgcccg agagtcggcc cggtgatcgc cagggccagt accccgccga cccagacgct
     2881 gaccgcgatg aggtgcacgg ccagcgcgtt gacggcagtg gcgtggttgc ccgacccagc
     2941 ggcatgtccg gtcaacgcca ggggaagcag cgacgcgacg gacagcaccg ccagccagac
     3001 catcgccacg cgaccgcgcg cgaggagggc tccagcggcc acgacggcag ccccgattgc
     3061 catgatgagg atcacccgcg tctgctcgag cgagaacgcg aaggtcgtga actgtcgacc
     3121 gaacgacggg tcggacacgg gtatgccgat gaggtcggcc atgctcagca cggcccccgc
     3181 gaccccggtc acggcccaca gggcagctgt gaccgcggcg gcgcgcgtcg cggtcaggcg
     3241 tcgccgggta cgggtggtct ccgggacgag gaatgccgcg tggatcagga gcccgaccgt
     3301 cgccgcggcg gccaggtcct ggacggtctt ggcgtagagc agcccccacc gcacgaatgc
     3361 gccggggtcc ccgatcaccg gggcggccgc agcctgtccc agggccgcca tcagcggcaa
     3421 tgccaccaaa cccgcgagca cgagcacgac cccagggagt ctggaacgcg tggtcgaggg
     3481 gaggctcata cccaccagcg taagtagggt ggggtaatgc ctttgcatcc ggcagccccg
     3541 gaagacctcg tcggcctcgt ggcggcgtac cagcagacga tccaggcggt cgtcgatctg
     3601 ggacgctcct gtggcgacgc cgacttcgac ctgccgaccg cctgccctgg ctggacggtg
     3661 aaggaccaga tctcccacgt cgtcgggttg gagtcctggc tgcacaccgg cgacgttccc
     3721 cgagtctccg tgcctgagta cgcccacatc cgtcacgagg ccggccagtt cgtcgaacgc
     3781 tcggtcgagc agcgccgaag catggtcggc agcaaggtcg tcgccgagct ggaggtcgtg
     3841 gcggccaagc gcatcgagca gttcggcgcc cccgagatga ccttggagac cgtcgtccgc
     3901 ggcgcctggg gccctgctcc cgccggcgaa agcctgcggc tgcgcatcct ggacatctgg
     3961 acccatgagc aggacatccg tcaagcactg ggacgccccg gcaacctcga ctccggcggc
     4021 gccgcagtct tcatggacgt gctcttcgcg gcccttccga agctggttgc ccgcaacgcc
     4081 ggcatcgagc ccgggaacgt cgtgatcttc gacgtgaccg gccccatcat gggccgggct
     4141 gggatctggg tcgaggaggg tgaggacggt ggcaagcccc gcggcatacc cctgttctcc
     4201 ggggtggccc acgacggtga ccctcgcgac gtgttcacca ccatcacgct ctcgaccgac
     4261 gccctgactc gccgggccgc tggccgcggg tc
//
LOCUS       DASYFY010000215         6064 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1854635, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000215 DASYFY010000000
VERSION     DASYFY010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6064
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1854635"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VGN19_04110"
     CDS             <1..291
                     /locus_tag="VGN19_04110"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEV7195102.1"
                     /translation="VTRQADWSHADVETAHSLSEALSLAGPAAEVFVCGGGQVYAEAM
                     GWAHRLLITEVDQSPDGDVRFPRIDSARWRETSREAHQGFSWVTYERASQAS"
     gene            complement(297..1424)
                     /gene="paaE"
                     /locus_tag="VGN19_04115"
     CDS             complement(297..1424)
                     /gene="paaE"
                     /locus_tag="VGN19_04115"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaE"
                     /protein_id="HEV7195103.1"
                     /translation="MALLSGPRADTVTRRRAQFHPLTVAGVERLTDDAVAVTFHVPDE
                     LRADYRFEPGQHLTLRATIGGEDVRQSYSICLSRNQAQRTGTLRVASARVAGGRMSNW
                     LNDSLRAGDVIEVMTPLGSFTCATRPAGIRHHLAIAAGSGITPVLSLLATALEEEPGS
                     QVTLLYGNRTTASVMFLEELEDLKNRYLGRFQLLPVLSREPQDVELFTGRLDPERVAR
                     LLEVFAPVSTVDEWYLCGPYGMVTGAQELLAEAGVDAGHVHHEIFHVAEQESPRQEVA
                     VVEGAPPAAVVTINLDGRTTRIEMPTVDETILNATLRARPDAPYSCTGGVCGTCRARL
                     VSGEVRMDRNYALEPAEVAAGVVLACQSHPVTDEVSLDYDA"
     gene            complement(1435..1968)
                     /gene="paaD"
                     /locus_tag="VGN19_04120"
     CDS             complement(1435..1968)
                     /gene="paaD"
                     /locus_tag="VGN19_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaD"
                     /protein_id="HEV7195104.1"
                     /translation="MVNAVVSEVVVKDAVAQAIADIPDPEVPVVSIEDLGILRGVVVD
                     EAARHVRVTITPTYSGCPAMDVIGAHIRHVAGRSGYTSEVVTQLSPAWTTDWLSDRGR
                     ARLHEFGIAPPAARVSGSVGESVGAVGVSLHRRQVSCPQCGSTDTEELARFGSTACKA
                     LRRCRACREPFDEFKAL"
     gene            complement(1962..2738)
                     /gene="paaC"
                     /locus_tag="VGN19_04125"
     CDS             complement(1962..2738)
                     /gene="paaC"
                     /locus_tag="VGN19_04125"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HEV7195105.1"
                     /translation="MAEVTGSANPAVAPFVLGLADDALVYAQRLGEWISRGPQIEEDM
                     ALANIGLDLLGQARVLLTRVGELDGTGRTEDELAYFRDEREFRNVHLVEQERRGFGFE
                     MARLLWFASYQCELYAALRASSDPVVAGVAEKALKEVDYHRDHATQWLLRLGDGTEES
                     HRRMQQGLAEVQPYVAELFEDDESSATAAQAGVGVLPSSLHAGAAGYVAQVVAQATLE
                     APAESRWRSRAGRDGVHSRPMGSLLAELQHIARSHPGATW"
     gene            complement(2738..3061)
                     /gene="paaB"
                     /locus_tag="VGN19_04130"
     CDS             complement(2738..3061)
                     /gene="paaB"
                     /locus_tag="VGN19_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaB"
                     /protein_id="HEV7195106.1"
                     /translation="MSASNDGTNDRTNDRATWPLFEVFVRGKRGLSHVHVGSLHAPDA
                     TMALRNARDVYTRRQEGVSLWVVRASDITASSPDERDSFFDPAGDKVYRHPTFYDVPA
                     DVEYL"
     gene            complement(3058..4080)
                     /gene="paaA"
                     /locus_tag="VGN19_04135"
                     /pseudo
     CDS             complement(3058..4080)
                     /gene="paaA"
                     /locus_tag="VGN19_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148827.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaA"
     gene            4164..4817
                     /locus_tag="VGN19_04140"
     CDS             4164..4817
                     /locus_tag="VGN19_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195107.1"
                     /translation="MPTPDHQHDHAQDHSQHDHSQHDHSQQRGPLADASVRLARVSDA
                     PAVGIVQSVVWREAYAEVVPAEAVESFEPQAFGNAWRRSLGDPPPGVHRLLVACAGDQ
                     VVGFAAIGPSQDPDTSPETGELTALGVHPNARRAGHGSRLLNAAVDTLRGAGATAMSI
                     WVLATDEGTRAFLTRSGLAPDSAFRDRVVSPDGDTAREVRLMASLVEEEPPPPVPQS"
     gene            4814..5575
                     /locus_tag="VGN19_04145"
     CDS             4814..5575
                     /locus_tag="VGN19_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEV7195108.1"
                     /translation="MSAASAASSPLPRERRAQVLRQSVSVAVATGAYGISFGALSVAA
                     GLTIWQTQVLSLLLFSGGSQFAFVGIMAGGPAGAVAAIATSTLLGVRNSLYGLQVSRL
                     LEVRGLRRVAAAQVTIDESTAVGVAQPEAAAGRLGFWATGLGVFVCWNAMTLLGAVVG
                     DTIGDPRRYGLDAAAAAAFCALLWPRLKSVDAFAIAALAAVVAVLLAPHAPAGVPVLV
                     AAFSALLAAFWRRAHHDPPAPHHWVDEPSAFPEAP"
     gene            5572..5883
                     /locus_tag="VGN19_04150"
     CDS             5572..5883
                     /locus_tag="VGN19_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEV7195109.1"
                     /translation="MSVWTAVLAASALAFVLKFLGYIVPARWLDGDRTSRVTSALPIA
                     LLAALVGVQTVTTSGSVVVDSRAAAVAVAVVALLLRAPFIVVVVLAAAVAAGLRLLGL
                     P"
BASE COUNT          833 a         2135 c         2142 g          954 t
ORIGIN      
        1 gtgacgcgcc aggccgactg gagccacgct gacgtggaga cggcccactc gctcagcgag
       61 gcgttgtcgc tcgcgggccc ggcggccgag gtgttcgtct gcggcggcgg tcaggtgtac
      121 gccgaggcga tgggctgggc acatcggctg ctcatcaccg aggtggacca gtcgcccgac
      181 ggggacgtgc gtttcccccg gatcgactcg gcccggtggc gcgagacctc tcgcgaggct
      241 caccagggct tcagctgggt gacctacgag cgcgcctctc aggcgtcgta agcgtctcag
      301 gcgtcgtagt cgagggagac ctcgtcggtg accgggtggc tctggcacgc cagcacgacg
      361 cccgcggcga cctcggccgg ctcgagcgcg tagttgcgat ccatccgcac ctcgccggac
      421 accagccggg cgcggcacgt cccgcagacg ccgcccgtgc aggagtacgg cgcgtcgggc
      481 cgggcccgca gcgtggcgtt gagaatggtc tcgtcgaccg tgggcatctc gatccgggtg
      541 gtgcgcccgt cgaggttgat cgtgaccacc gccgccggcg gagcgccctc gacgacggcc
      601 acctcctgcc ggggggactc ctgctcggcc acgtggaaga tctcgtggtg tacgtgcccg
      661 gcgtcgaccc ccgcctcggc gagcagctcc tgggcgcccg tgaccatgcc gtacgggccg
      721 cagagatacc actcgtccac cgtggacacc ggcgcgaaca cctcgagcag ccgcgcgacc
      781 cgctcggggt cgaggcgccc ggtgaagagc tcgacgtcct gaggctcgcg cgacaggacc
      841 ggcaggagct ggaaccggcc caggtaacgg ttcttgaggt cctccagctc ttcgaggaac
      901 atcaccgaag ccgtggtccg gttgccgtac agcagggtga cctgcgagcc cggctcctct
      961 tcgagggcgg tggccagcag cgagaggacg ggcgtgatgc cactcccggc cgcgatggcc
     1021 aggtggtgcc gtatgccggc tgggcgggtc gcgcaggtga aggaaccgag cggcgtcatc
     1081 acctcgataa cgtcaccggc gcgcagggag tcgttgagcc agttcgacat ccggcctccg
     1141 gcgacccgag ccgaggccac cctcaaggtg ccagtgcgct gagcctggtt gcgagacagg
     1201 cagatcgagt acgactgtcg aacgtcctca cccccgatgg tggcccgcag ggtcaggtgc
     1261 tggccgggtt cgaaacggta gtccgcacgc agctcgtcgg gcacgtggaa ggtgaccgcg
     1321 accgcgtcgt cggtgaggcg ctccacgccc gccacggtca gcgggtggaa ctgcgcgcgg
     1381 cggcgggtga cggtatcggc ccgggggcca gagagcagtg ccatcagctg tccttcacag
     1441 ggccttgaac tcgtcgaagg gctcgcggca ggcgcggcaa cgccgcagcg ccttgcaggc
     1501 cgtcgaaccg aaccgggcga gctcctcggt gtcggtgctg ccgcactgcg ggcaggacac
     1561 ctggcgacga tgcaacgaaa cccccacggc gccaacagat tcaccgacgg atccactaac
     1621 gcgggcggcc ggcggtgcga tcccgaactc gtggagcctg gcacgaccac ggtcactgag
     1681 ccagtccgtc gtccatgccg gactgagctg ggtcacgacc tcgctggtgt atccggaccg
     1741 ccccgccacg tggcggatgt gcgcaccgat gacgtccatg gcggggcagc cggagtaggt
     1801 cggggtgatg gtgacccgaa cgtgacgggc tgcttcgtcg acgacgacgc cacgcaggat
     1861 cccaaggtcc tcgatggaga cgacgggcac ttcgggatcc gggatgtcgg caatggcttg
     1921 cgccacagca tctttcacga ccacctcact cacgacggcg ttcaccacgt cgctccaggg
     1981 tgcgaccggg cgatgtgctg cagctccgcg agcagggagc ccatcggtcg ggagtgcacg
     2041 ccgtcccgcc cggcgcgcga tcgccatcgc gactccgcgg gggcctcgag agtggcctga
     2101 gcgaccacct gggcgacata cccggcagcc cccgcgtgca gagacgaggg cagcaccccg
     2161 acgccggcct gcgcggccgt ggcggacgac tcatcatcct cgaacagctc ggccacatag
     2221 ggctgcacct ccgcgagccc ttgctgcatc cgccggtggg actcctcggt gccgtccccc
     2281 agtcgcagta gccactgggt ggcgtggtcc cggtggtagt cgacctcttt gagcgccttc
     2341 tccgccaccc cggcaaccac cgggtcggac gaggcacgca gcgcggcata cagctcgcac
     2401 tggtagctcg cgaaccacag cagccgcgcc atctcgaaac cgaagccgcg ccgctcctgc
     2461 tccacgaggt ggacgttgcg gaactcccgc tcgtcccgga agtaggccag ctcgtcctcg
     2521 gtgcggccgg tcccgtcgag ctcgcccacc ctggtcagca gcacgcgcgc ctggccgagc
     2581 aggtcgagcc cgatgttggc cagcgccatg tcctcctcga tctgcggacc ccgcgagatc
     2641 cactcgccga gccgttgggc atagaccagc gcgtcatcgg ccaggcccag gacgaacggc
     2701 gcgacagccg ggttcgccga cccggtgacc tcagccatca gaggtactcc acgtccgcgg
     2761 gcacgtcgta gaacgtcgga tgccggtaca ccttgtcgcc ggccgggtcg aagaacgagt
     2821 cgcgttcgtc cggtgagctg gcggtgatgt cggacgcccg caccacccac agcgacacgc
     2881 cctcctggcg gcgggtgtag acgtcgcggg cgttgcgcag ggccatcgtc gcgtccggcg
     2941 cgtgcagcga gccgacgtgc acgtgggaca ggccccgctt gccccggacg aacacctcga
     3001 acagcggcca ggtggccctg tcgttggtgc ggtcgttggt gccgtcgttg ctggcgctca
     3061 tgccacccgc tccgtcatgg cctgcttggc ggcatacgcg gtcgcggcct cgcggaccca
     3121 cgccccctcg tcatgcgcgg cgacccggaa ggcgatgcgt tcggcgttgc acgccccgtc
     3181 gcctttgagt acccgccaga actcgtccca gtcgatcacg ccgaagtcgt agtgcccgcg
     3241 ctcggcgttc taccgcaggt cgtcgtcggg agggcggatg cccaggcggt cggcctgcgg
     3301 caccatcatg tcgacgaact tctgacgcag gtcgtcgttg ctgaaccgct tgatccccca
     3361 ggccatggac tgttccgtgt gtcccccact cttggcggcg tctccggtgt cgggcgggcc
     3421 gaacatcatc aaggccggcc accaccaccg gttcgcggcg tcctgggcca tggcctgctg
     3481 ggcttcggtt ccgcgcatga gggtccagag gatctcgaaa ccctggcgct ggtggaacga
     3541 ctcctccttg cagacccgga tcatggcgcg cgcgtacggc ccgtacgaac aacggcacag
     3601 cggcacctgg ttcatgatcg cggcgccgtc gacgagccag ccgatcgccc cgcagtccgc
     3661 ccaggtcagc gtggggtagt tgaagatcga ggagtacttc tgccggccgg tgtgcaggcg
     3721 ctcgagcagg tcctctcggt ccacgccgag cgtctctgct gcgctgtaga gatagagccc
     3781 atggccggcc tcgtcctgca ccttggccat caggatcgcc ttgcgtcgca gcgaaggcgc
     3841 gcgggtgatc cagttgccct cgggctgcat cccgatgatc tccgagtggg cgtgctgcgc
     3901 gatctgccgg atcagggtct ggcgataggc ctccggcatc tggtcgcgcg gttcgatccg
     3961 ctgctcagcg tcgatgaggt cgtcgaacag ccccgactca gcggcgttga ggggctcgtc
     4021 cgggcccggg ggcgccactg agccgtcaga cgcgtcggtc gcgaagtcgt tgccgtacat
     4081 gccctccagt atgggtgttg ttacagactt ctgcaattgt gcagcgcaac tgtcatacgg
     4141 gtggtggatg acaggatggc gacatgccga cgcctgacca ccagcacgat cacgcgcagg
     4201 atcattcgca gcacgaccac tcccagcatg accactccca acagcgaggc ccgctggccg
     4261 acgccagcgt gcggctcgcc cgcgtgagtg acgcccccgc cgtgggcatc gtccagtccg
     4321 tcgtgtggcg tgaggcgtat gccgaggtgg tgcccgccga ggccgtggag tccttcgagc
     4381 cgcaggcgtt cggcaacgcg tggcgccgct cgctggggga ccccccgccg ggagttcacc
     4441 gtctgctggt cgcgtgcgcc ggagaccagg tggtggggtt cgccgccatc ggtccgagcc
     4501 aggatccgga cacctccccc gagaccggcg agctcaccgc cttgggagtc cacccgaacg
     4561 cccggcgcgc cgggcacggc tcacggctgc tcaacgcggc cgtggacacg ctgcggggcg
     4621 ccggcgcgac cgcgatgtcc atctgggtgc tcgcgaccga cgagggcacc cgggcgttcc
     4681 tgacgcgctc cgggctggcc cccgacagtg ccttccggga ccgggtcgtc tcgcccgacg
     4741 gcgacaccgc ccgcgaggtg cgcctgatgg cgtcgctcgt cgaggaggag ccacccccac
     4801 ccgtgccaca gtcgtgagcg ccgcgagcgc cgcatcgtcg ccgctgcccc gcgagcgccg
     4861 cgcccaggtg ctgcgacagt cggtgtccgt ggccgtggcc accggggcgt acggcatcag
     4921 cttcggagcg ctctccgtgg cggcgggctt gaccatctgg cagacccagg tgctttcgct
     4981 gctgctgttc tcgggcggct ctcagttcgc cttcgtcggg atcatggccg gaggacctgc
     5041 cggcgcggtt gcggcgattg ccacctccac cttgctgggc gtgcgcaaca gcctctacgg
     5101 gctgcaggtc tcgcgactgc tggaggtgcg cggacttcgg cgggtggcgg ccgcacaggt
     5161 caccatcgac gagtcgaccg cggtcggcgt cgcccagccg gaggccgcgg ccggtcggct
     5221 ggggttctgg gcgacggggc tcggtgtgtt cgtctgctgg aatgccatga ccctgctggg
     5281 ggccgtggtg ggcgacacca tcggggatcc gcgccggtac ggtctggatg ccgcggccgc
     5341 cgcggcgttc tgcgcgttgc tctggccgcg cctcaagtcc gtcgacgcgt tcgccatcgc
     5401 cgccctggcg gctgtggtgg ccgtgctgct cgcgccgcac gctccggcgg gagtccccgt
     5461 gctcgtggcc gcgttctccg cgctgctggc ggcgttctgg cggcgtgccc atcacgaccc
     5521 gccggccccg caccactggg tcgacgagcc gagcgccttc ccggaggcgc cgtgagcgtg
     5581 tggaccgcag tgctggccgc cagcgccctg gccttcgtgc tgaagttctt gggctacatc
     5641 gtcccggccc gctggctcga cggcgaccgg acgagccggg tcacctcggc gctcccgatc
     5701 gctctactgg cggccctggt cggagtccag accgtcacca cctcgggttc tgtggtcgtc
     5761 gactcgcgag cggcagccgt ggccgtcgcg gtcgtggcgc tgctgctgcg ggcgccgttc
     5821 atcgtcgtcg tggtgctggc cgcagcggtg gccgccggac tcaggctgct cggcctgccc
     5881 tagtcctccc ccacttcttg ccctgaatcc accggttttg gcggccagga cgcccgaaac
     5941 ggtgggttca gggcaatgag tcggggtggg ttcagggcaa tgagtcgggg tgggtggtgc
     6001 gccaggctcg cacggcggcg cgatagtgcc gctgctcccc ggatcggtcg ttggccaccc
     6061 ggca
//
LOCUS       DASYFY010000216         2716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1224622, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000216 DASYFY010000000
VERSION     DASYFY010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1224622"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..419
                     /locus_tag="VGN19_04155"
     CDS             <1..419
                     /locus_tag="VGN19_04155"
                     /inference="COORDINATES: protein motif:HMM:NF036525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195110.1"
                     /translation="LAASLQRFRDATFGVDDHAERLRAAVSSAYDVTPSEALAARILL
                     SHMDLLSTPRPSEREEAERQQARVLVRAIEDEWSALLEKGMADGAFARRDPRQSSQAI
                     LSLLVGVWRWYRPGGEQTLSTISKFMTGACERLVGP"
     gene            466..807
                     /locus_tag="VGN19_04160"
     CDS             466..807
                     /locus_tag="VGN19_04160"
                     /inference="COORDINATES: protein motif:HMM:TIGR02118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EthD family reductase"
                     /protein_id="HEV7195111.1"
                     /translation="MYNLVLMASKPDDWTHEQFIEWWRGEHAAVTYVLPGLRRWHHTD
                     IMDALEERSQGWDGISILSFDDRAALDAALASDEWKAALAHVGKMRGRRIAVMGEERV
                     MFDEKVIGATR"
     gene            882..1835
                     /locus_tag="VGN19_04165"
     CDS             882..1835
                     /locus_tag="VGN19_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7195112.1"
                     /translation="MPNDALRAVNVYALETSDGLALIDGGWHLPNTACELDAALRTIG
                     RGLDDVSAVFVTHIHRDHYTLAVELRRQVGARVHLGRAEAPGLRAVRELGSNVPVSSL
                     RELARAGAADLVEVVIALTQSEAFDAADWEDPDGWLEAGRLDLGSRQLEVVPTPGHTK
                     GHVVFHDVDSGLMFTGDHVLPTITPSIGFELSEWGRPLADYLYSLAAMRGRPDAILMP
                     AHGHPGGSLHDRVTVLLTHHQERFQQIFDNVEQATSPITGATVAGGMLWTRRGRAFGS
                     LDPFNQMIAICETMAHLDVLADRGQLVAVAEDDHPTRFSAA"
     gene            complement(1891..2643)
                     /locus_tag="VGN19_04170"
     CDS             complement(1891..2643)
                     /locus_tag="VGN19_04170"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7195113.1"
                     /translation="MMRFENRSVLVTGSTGGLGVEICRRLAEEGARLVVTDLQLEPCE
                     ALVHGLPRPEQHLALALDVAREDQWIAVTEQVRVQQAGLHALVNNAGIGSLATVEDET
                     TERWNQVVAIDQTSVWLGMKHAGALIERSGGGAVVNMSSILGTVGGFGTSFAYHAAKG
                     AVRTMTKSAALHWATRGVRVNSLHPGFIGTDQLLERFEGSERHRAMLAGTPMGRLGTA
                     SEIAAVVAFLASDDASFMTGSEIYADGGWTAQ"
BASE COUNT          427 a          950 c          905 g          434 t
ORIGIN      
        1 agctggccgc gtcgctgcaa cgcttccgag acgccacctt cggcgtggac gaccacgccg
       61 aacggttgcg cgccgcggtc tcgagcgcat acgacgtcac cccgagcgag gccctggccg
      121 cccggatcct cctctcgcac atggatctgc tcagcacccc gcgtccctcc gaacgcgagg
      181 aggcggagcg ccaacaagcg cgtgtcctcg tccgggccat cgaggacgag tggtcggcgc
      241 tgctcgagaa gggcatggcg gacggtgcgt ttgcacgtcg cgacccgcgc cagtccagcc
      301 aagccatcct gtcgctcctc gtcggcgtgt ggcgttggta ccgcccgggt ggtgaacaga
      361 ccctctcgac catctcgaag ttcatgacgg gggcctgcga gcggctggtc ggcccatgaa
      421 tgtcgtcatt gctcagccgg ccctagagcc ccacgaagga gacgcatgta caacctcgtc
      481 ctgatggcct cgaagcccga cgactggacg cacgagcagt tcatcgagtg gtggcgcggc
      541 gagcacgccg cagtgaccta cgtgctgccc ggcctgcgac ggtggcacca cactgacatc
      601 atggacgcgc tcgaggagcg ttcgcagggc tgggacggca tctcgatcct cagcttcgac
      661 gaccgggcgg ccctcgatgc cgccctcgcc agcgacgagt ggaaggcggc cctggcccac
      721 gtgggcaaga tgcgcggccg gcggatcgcc gtcatgggtg aggagagggt catgttcgac
      781 gagaaggtga tcggcgctac ccggtgattt ccgcgcgccc cgactggtgg gcgccagggt
      841 gcttcgaagc ggcgcccggt gtgcaccgga taccgctggc cttgcccaac gacgcgctgc
      901 gagccgtcaa cgtctacgcc ctggaaacat cggacggcct tgcccttatc gatggcggct
      961 ggcacctgcc caacaccgcg tgcgagctgg atgccgccct gcgcacgatc ggtcgtggcc
     1021 tggacgacgt gtcggcagtc ttcgtcactc acatccatcg cgaccactac acgctggccg
     1081 tcgagctacg gcgccaggtc ggggcgcggg tgcatctggg gcgggccgaa gcgcctggcc
     1141 tcagagctgt gcgggaactg ggcagcaacg tgccggtctc ctcgctgcgc gagctcgctc
     1201 gggccggcgc ggcggacctg gttgaggtgg taatcgcact cacccaatcg gaggccttcg
     1261 acgccgctga ctgggaggac cccgacggct ggctcgaggc gggacggctc gacctcggat
     1321 cccggcagct ggaggtggtg ccgacccccg ggcataccaa gggacacgtc gtgttccacg
     1381 acgtcgattc cggactgatg ttcaccggcg accacgtgct gccgaccatc accccctcca
     1441 tcggcttcga gctcagcgag tgggggcgcc cgctggccga ctacctctac tcgctcgccg
     1501 ccatgagggg tcgtcccgac gcgatcctca tgcccgccca cggacacccc ggagggtcgc
     1561 tccacgaccg cgtgaccgtg ctcctgaccc accatcagga acgttttcaa cagatcttcg
     1621 acaatgtgga gcaggcgaca tcaccgatta ccggggccac ggtcgcaggg ggaatgctgt
     1681 ggacgcgtcg gggccgagcc ttcggcagcc tcgacccgtt caaccagatg attgcgattt
     1741 gcgagacgat ggcgcacctc gacgtgctcg ccgaccgcgg ccagctcgtg gcggttgccg
     1801 aggacgacca cccgacgagg ttctccgccg cctaggtctc tgagggcgtt acgatcggct
     1861 cgccgttcca ccggaggtcg tgacgcgctc ctactgcgcg gtccagccgc cgtcggcgta
     1921 gatctctgag ccggtcatga agctggcgtc gtcactggcc aggaaggcga ccaccgcagc
     1981 gatctcgctc gcggtcccca accgacccat cggcgtgccg gcgagcatgg cgcgatggcg
     2041 ctcggagccc tcgaaccgtt ccaagagctg atcggtgccg atgaaccccg ggtgcagcga
     2101 gttcactctg accccccggg tggcccagtg cagagcggcg ctcttggtca tggtgcgaac
     2161 ggctcccttg gccgcgtgat aggcgaagct cgtgccgaac ccaccgaccg tgccaaggat
     2221 cgaggacatg ttgacgacgg cgccgccgcc cgagcgctcg atcagcgcac ccgcgtgctt
     2281 catcccgagc cagacggacg tctggtcgat agcgaccacc tggttccagc gctcggtcgt
     2341 ctcgtcctcg acggtggcaa ggctgccgat gccggcgttg ttgacgagcg cgtgcagacc
     2401 ggcctgctga acccgcacct gctccgtcac agcgatccac tggtcttccc gagcgacgtc
     2461 gagcgcgagg gcaaggtgct gctccggtcg aggcaagccg tgcaccagcg cctcgcacgg
     2521 ttcgagctgc aggtcggtga ccacgaggcg cgccccctcc tcggcaagcc ggcggcagat
     2581 ctccacaccc aggccgccgg tcgaaccggt gacgaggacc gacctgttct cgaaccgcat
     2641 catggacgtc actttctcgg gaggtcctcg gcctgcgatc ggttgctgct ctgacctggc
     2701 ttcgccgggg ctcaag
//
LOCUS       DASYFY010000217         9670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_909336, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000217 DASYFY010000000
VERSION     DASYFY010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9670
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909336"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VGN19_04175"
     CDS             <1..309
                     /locus_tag="VGN19_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEV7195114.1"
                     /translation="FGRLARRFGWTDEEDPVKVEEAVGRLFPRKDWTMLSHVLIFHGR
                     RTCHARKPACGACPVARLCPAYGTGETDPDNAAKLLKFELAPAAAGTDFPYAVGPGPL
                     "
     gene            306..1034
                     /locus_tag="VGN19_04180"
     CDS             306..1034
                     /locus_tag="VGN19_04180"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEV7195115.1"
                     /translation="MTAAPKPGPPSSAVMPRPAWLERAHAGIASADRGFFERFAPPPE
                     GGRLSSVLLLFGPAAGGGEDIVLTERAHTLRSQPGDISFPGGMREPSDTSDTEAALRE
                     TQEEVGIDPATIDVVGELPHIYLSPRRFVVTPVLGWWAVPGQVDRVDPGEVHRAVRAP
                     LADLLDPSSRFTVTHPSGYRGPGFDVDGLFIWGFTAGLLSAVLDFGGLTVPWDRSLER
                     PLPVRDQPGGRGDALTKTATEGRA"
     gene            1034..2245
                     /locus_tag="VGN19_04185"
     CDS             1034..2245
                     /locus_tag="VGN19_04185"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarP family serine protease"
                     /protein_id="HEV7195116.1"
                     /translation="MFLGLTVLDYLLIVLFISYGVTGYRQGLLVSVLSLAGFLTGGAL
                     AMWLVPMAITQWAQLGSSPLLRTVVLIAGVFILASAGQAVAVSLGGRLRSAVRVKPAQ
                     VFDSVLGAIAVVLSACVLVWFIAGALRGGAPAPLAKAIGESRVLRTIDSVVPPETSRL
                     FAGFRAVLDREGFPRVFDGLQAERITPVAPPDPAVVQTAAVRDAANSIVKITGVAESC
                     NRGQEGSGWVVAPERVVTNAHVVAGMRTPTLRIHGTGRSYTGRVVIFDPKRDLAVISV
                     PGLPAAPLRQGSDLARGDAGVVAGFPLDGPYRLDAARVRDIVDAQGSDIYGQPGTSRE
                     VYSLYAQVRPGNSGGPLLSADGRVVGVIFAKSLDDDKTGYALTANEVRPVLQAAASAS
                     TPVDTGACASG"
     gene            complement(2251..3165)
                     /locus_tag="VGN19_04190"
     CDS             complement(2251..3165)
                     /locus_tag="VGN19_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7195117.1"
                     /translation="MSLDASMALIEGPWEHRFVAANGARFHVAEQGDGPVVLLLHGFP
                     QFWWAWRHQLGALADAGYRACAMDLRGYGASDKPPRGYDTRTSATDVAAVLRSLGGSR
                     AVVIGHGWGGWIAWSMPTLQPTVTRAIASLSMPHPLVFRKASFTHPAQLKANAYLAGL
                     QRPFVPERQMTVHGGYVQRLLREWASPEGIWPSPDEARTYAEAMSLPFVAHSAAEYYR
                     WVVRSQFRPDGWRFAAAMRTPITVPVLQLHGEHDRAVLPSIAADPSAPVVGPFERHLV
                     AGAGHFLPEEAPDVVTGRLLDWLSRLPG"
     gene            complement(3254..3649)
                     /locus_tag="VGN19_04195"
     CDS             complement(3254..3649)
                     /locus_tag="VGN19_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEV7195118.1"
                     /translation="MSSNQQSPERTIGQLVADATHDISSIMRSEIALAKAEIASDAKS
                     AGLGAAMFGAAAFVGLLGLIFLFHTIAYVLAIWVPVWAGYLITTGLLFVVAAALAVLG
                     RRSLKAMKGKPERTIKNAQATITTIKSGS"
     gene            complement(3694..5004)
                     /gene="nhaA"
                     /locus_tag="VGN19_04200"
     CDS             complement(3694..5004)
                     /gene="nhaA"
                     /locus_tag="VGN19_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEV7195119.1"
                     /translation="MSLSPRRPRIFARPTWTETQFVAAALRTETVGGALLLLAALVAL
                     VWENTPAFHGYEALRDWSIGPPQLQLSLTLAQWASDGLLALFFFVAGLELKRELVVGE
                     LRTPAKAAVPVTAALSGVVVPAVMYAATVAVRGGSAAVLRGWAIPTATDIAFALAVLA
                     VIGTHLPSALRSFLLTLAVVDDLVAITIIAVFYTSSLHPMLLLAALVPMVMFGWLTQR
                     RVTRWWLLVPLAVLAWGLVHASGVHATVAGIVLGLIVPVRPRSKVASPTTTTTTTTGT
                     VGADELTEDLAHRFEHRLRPLSAGVAVPLFAFFAAGVRVVGGGFGQSLSDTAALGIGL
                     GLVVGKFVGVLGGTWAVARFTHAELDDDLAWWDVAGLSLLAGMGFTVSLLVAELAFGP
                     GTPHDQDAKVAVLLASALAAVLAAIVLRARNAAYRRLETLEPHG"
     gene            complement(5040..5582)
                     /locus_tag="VGN19_04205"
     CDS             complement(5040..5582)
                     /locus_tag="VGN19_04205"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEV7195120.1"
                     /translation="MPRLSVVVASTRPQRIGPRVAQWVLDAVPDDFETTLHDLRTLDL
                     PFLDEPAQPAAGNYAHEHTRRWSAAMLATDALVLVMPEYNRGYNAALKNAIDFLYAEW
                     EGLPVACVGYGWHGASFARSALRQTLERIKMTVVDAPSLSFGSTVSQAGEVTADDVVE
                     AELSAMFETLRASARAPRHR"
     gene            5762..6559
                     /locus_tag="VGN19_04210"
     CDS             5762..6559
                     /locus_tag="VGN19_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEV7195121.1"
                     /translation="MAYGAELSPIALAHRGGAGLAPENTLAAFGLASALGVRYLETDV
                     RLSADGHLVCFHDDRLDRVTGHRGPVRRHTLASLRAMRVGGTEQIPTLAEALEAFPHA
                     RFTVDLKDRDAIAPLVSLLKHRDFAERVCVAGAWDGWLASVRLQVPHVTTALGWRSLT
                     ALVGASRTGMSPARRFATAEFAHVPLRLGRVPVFVERLVEGAHRIGVRVIVWTVDEPH
                     QMTRLLDAGVDGIITDRPDLLREVLVARDQWLPMLPTAPNRVPEDAA"
     gene            complement(6590..8539)
                     /gene="acs"
                     /locus_tag="VGN19_04215"
     CDS             complement(6590..8539)
                     /gene="acs"
                     /locus_tag="VGN19_04215"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019136211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEV7195122.1"
                     /translation="MSQSAQSRSFEPSSAFAQAANGRAELYDEAAADHEAFWARQARE
                     RLTWAKDFESTLDWSGAPFAKWYVGGQLNAAYNCVDRHVEAGNGDRVAIHFEGEGGDT
                     RTITYADLQRDVAKAANALQGLGVGKGDRVAIYLPMVPEAVAAMLACARIGAPHSVVF
                     GGFSADALRTRIADAEAKVVITADGQFRRGKAVPLKPAVDAALDGETTVEKVLVVRRT
                     NEKVDWVQGRDVWWHEAVEAASDVHEAQPHDAEHPLFILYTSGTTGKPKGIFHTTGGY
                     LAQAAYTNSVVHDVHPETDVYWCTADIGWVTGHSYIVYGPLANGATQVIYEGTPDTPH
                     QGRWWEIIEKYKVSILYTAPTAIRTFMKWGDDLPAKFDLTSLRVLGSVGEPINPEAWL
                     WYRKHIGSDRCPIVDTWWQTETGGIMISPLPGVTTLEPGSAQRPIPGISAEILDDEGK
                     PLRDPEAVGYLVLTKPWPGMLRGIWGDPERYKETYWSRFGEKYYFAGDGAKYDADGNI
                     WLLGRVDDVMNVSGHRLSTAEIESALVSHPSVAEAAVVGASDDTTGQAVVAFVILRGG
                     FHDDGDATVQELRNHVAKEIGPIAKPRSIMVVAELPKTRSGKIMRRLLRDVAENREVG
                     DVTTLADSSVMGLIKQGMSSGSGED"
     gene            8694..9551
                     /locus_tag="VGN19_04220"
     CDS             8694..9551
                     /locus_tag="VGN19_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195123.1"
                     /translation="MNSTLRRDRAEMRRAAEASRLGAITRRFGPEALLLLGVLSWWPA
                     GFWGLQTWLQLPLHIGQGDVLFFGAIAGAASVSLFVRAPWPRFGVVLGFSVIGWLLSA
                     PSRDSVPAERQTLVILLAAAALLGILLGARGHRSLLAAATVLALVAGLSPATWPHGLP
                     LAVALALPFGVASWQKVAPTLVSIARILVIWLVFGLLAAAVSHAWRVAHFGSGAGTRQ
                     HQLGHVIQEAWTFAKSQWWSLSQQSLSHQVGWFWVAAVLAVLVVATRVVTSGARRPAP
                     TGSPSRPGS"
BASE COUNT         1382 a         3314 c         3390 g         1584 t
ORIGIN      
        1 ttcggccgcc tcgcgcgacg gttcggctgg accgacgagg aggatccggt caaggtcgag
       61 gaggcggtgg gtcggctgtt cccgcgcaag gactggacga tgctgtctca cgtcctgatc
      121 ttccatggcc gccggacctg ccacgcccgc aagccagcct gtggcgcctg tccggtggcc
      181 cggctctgcc cggcctacgg aaccggcgag accgaccccg acaacgccgc gaagctgctc
      241 aagttcgagc tggctcccgc tgctgccggg accgacttcc cgtatgccgt ggggccagga
      301 ccactgtgac cgctgcgccc aagcccggtc cgccctcgtc cgcggtgatg cctcggcccg
      361 cctggctcga gcgggcccac gccggtatcg cctcggccga tcgtggcttc ttcgagcggt
      421 tcgcgccgcc gcccgagggg ggccgactgt ccagcgtgct gctgctcttc ggaccggcgg
      481 ctggtggggg cgaggacatc gtgctcaccg aacgggcgca caccttgcgg tcgcagcctg
      541 gtgacatctc cttccccggc ggcatgcgtg agccgtcgga cacctctgac actgaggccg
      601 cgctgcgcga gacgcaggag gaggtgggga tcgacccggc cactatcgac gtcgtcggcg
      661 agctgcccca catctacctg agcccgcgac ggttcgtcgt cacgccggtg ctcggctggt
      721 gggccgtgcc gggtcaggtg gatcgggtcg acccgggcga agttcaccga gccgtgcgag
      781 cgccgctggc cgacctcctc gaccccagct ctcggttcac ggtcacccat ccgagtgggt
      841 accgcgggcc gggattcgac gtcgacggcc tgttcatctg gggttttacg gctggactgc
      901 tgtcggcagt cctcgatttc ggcgggctga ctgttccgtg ggaccgtagc ctcgaacgac
      961 cgcttcctgt ccgagaccaa cccggtggcc ggggggacgc gttgaccaag acagcaacgg
     1021 agggccgggc ctgatgtttc tcggactcac cgttctcgac tacctgctca tcgtgctgtt
     1081 catcagctac ggggtgaccg gataccgaca aggtctgctc gtgagcgtgc tttcgctggc
     1141 cggcttcctc accggtgggg ccctggcgat gtggctcgtg ccgatggcga tcacccagtg
     1201 ggctcagctg gggtcctcgc cgcttttgcg cactgtcgtt ctgatcgccg gcgtcttcat
     1261 cctggcctcg gcggggcagg cggtggcggt gtcgctcggc ggtcggctcc gatcggcggt
     1321 gcgggtcaag ccggctcagg tgttcgactc ggtgctgggc gccattgcgg tggtgctctc
     1381 cgcctgcgtg ctcgtgtggt tcatcgctgg cgcgctgcgc gggggtgccc cggcaccgct
     1441 ggcgaaggcc atcggcgagt cccgcgtgct gcggaccatc gactcggtgg tcccgccgga
     1501 gacgtcgcgg ctgttcgccg gattccgggc ggtgctggac cgtgagggct tcccccgggt
     1561 gttcgacggt ctgcaggccg agcggatcac cccggtcgcg cctcccgacc cagccgtcgt
     1621 gcagacggcc gccgtgcgcg acgcggcgaa ctcgatcgtc aagatcaccg gtgtcgcgga
     1681 gtcctgtaac cggggccagg aggggagcgg ctgggtcgtg gcccccgagc gggtcgtgac
     1741 caacgcgcac gtcgtcgccg ggatgcgcac tccgacgctg cgcatccacg gcaccggtcg
     1801 gtcctacacc ggccgagtgg tgatcttcga cccgaagcgt gacctcgccg tcatcagtgt
     1861 ccccggcctc ccggcggccc cgctgcgaca gggttccgac cttgcgcgag gcgatgccgg
     1921 tgtcgtggcc gggttccccc tcgacggtcc gtaccgactc gatgctgctc gcgtgcgtga
     1981 catcgtcgac gcccagggct cggacatcta tggtcagcct ggcacgagtc gcgaggtcta
     2041 ctccctgtac gcccaggtgc gtccgggcaa ctccggcggc ccactgctgt cggccgacgg
     2101 tcgcgtggtg ggagtcatct tcgccaagtc gctggatgac gacaagactg gctacgcatt
     2161 gaccgccaac gaggttcgtc cggtcctgca ggccgcagct tcggcctcga cgccggtcga
     2221 caccggcgcg tgcgccagcg gctgagggtt ctagccgggc agtcggctga gccagtcgag
     2281 caggcggccg gtgaccacgt caggggcttc ttcgggcagg aagtgccctg ccccggcgac
     2341 gaggtgccgc tcgaaggggc ccacgacggg cgccgagggg tcggctgcga tgctcggcaa
     2401 caccgcgcgg tcgtgctcgc cgtgcagctg cagcaccggc actgtgatcg gggttcgcat
     2461 cgccgcggcg aaccgccacc cgtccggtcg gaactggctt cgcacgaccc agcggtagta
     2521 ctcggctgcc gaatgggcga cgaacggcag ggacatggcc tcggcgtacg tccgggcctc
     2581 gtcgggtgaa ggccagatgc cctcggggga ggcccactcc cgcagcagtc gttggacata
     2641 cccgccatgc acggtcatct ggcgttcggg cacgaacggt ctttgcaggc cagccagata
     2701 cgcattcgcc ttgagctgcg cggggtgggt gaacgacgcc ttgcggaaca ccagcgggtg
     2761 cggcatcgac agtgaggcga tggcgcgggt caccgtcggc tggagggtcg gcatgctcca
     2821 ggcgatccac ccgccccaac cgtgaccgat gaccacggcg cgagaaccac ccagcgatcg
     2881 caggacggcc gcgacgtccg tggccgacgt tcgggtgtcg tagccacgcg gtggtttgtc
     2941 cgaggcgcca tagccgcgca ggtccatggc gcaggcgcgg tagcccgcgt cggccagggc
     3001 gcccagctgg tgcctccagg cccaccagaa ctgcggaaag ccatgcagga gtagcacgac
     3061 cgggccgtcg ccctgctcgg ccacgtggaa gcgtgcgccg ttggcggcga cgaacctgtg
     3121 ctcccaggga ccctctatga gggccatcga ggcgtccagg ctcatggggt gcttaccggc
     3181 gccttcggcg gcgtgctcac cgagtgttca cgacttcggg cctgcggtat gccggtagcc
     3241 gcgcgccggg ccctcaggac ccggatttga tcgtcgtgat ggtggcctgc gcgttcttga
     3301 tggtgcgttc gggcttgccc ttcatcgcct tcaggctcct gcgcccgagc acggccaggg
     3361 ccgcggcgac gacgaacagc agtccggtcg tgatgaggta gcccgcccag accggaaccc
     3421 agatcgcgag cacgtaggca atcgtgtgga agaggaagat caagcccagc agaccgacga
     3481 acgcggcagc gccgaacatc gccgctccca ggcccgccga cttggcatcg ctggcgatct
     3541 cggccttggc gagggcgatc tcgctgcgca tgatgctgga gatgtcatgg gtcgcatcgg
     3601 cgacgagctg cccgatggtt cgttcggggc tctgctggtt ggagctcatg gcctcaccct
     3661 cgcttccgtc ggcggtgtgc cggcgtgcca accctaaccg tgcggctcga gcgtctccag
     3721 cctgcggtat gcggcgttgc gggcgcgcag cacgatggcg gccagaactg ccgcgagggc
     3781 ggaggcgagc agtaccgcca ccttggcatc ctggtcatgc ggcgtgcctg ggccgaacgc
     3841 gagctctgcc accagcagag agacggtgaa ccccatcccg gccagcaggg aaagtcctgc
     3901 gacgtcccac caggccaggt cgtcgtcgag ctcggcgtgg gtgaatcgag ccacggccca
     3961 ggtcccgccg aggaccccca cgaacttgcc tacgacgagt ccaagcccga tgcccagcgc
     4021 agcggtgtcc gacaagctct ggccgaagcc gccgccaacc acccggaccc cggccgcgaa
     4081 gaacgcgaag agcgggacag cgacaccggc cgacagtggt cgcagccggt gttcgaatcg
     4141 gtgcgccaga tcctccgtga gctcgtctgc cccgacagtg cccgtcgtcg tcgtcgtggt
     4201 cgtggtcggg ctcgcgacct tgctccgcgg ccggaccggg acgatgaggc cgagcacgat
     4261 cccggcgacc gtggcgtgga ctcccgacgc gtggaccaag ccccacgcca ggaccgccag
     4321 gggcacgagc agccaccagc gggtcactct gcgctgagtc agccaaccga acatcaccat
     4381 gggcacgagc gcagcgagca gcagcatcgg atgaagtgag ctggtgtaga agaccgcgat
     4441 gatggtgatc gccacgaggt cgtcgacgac agccagggtc agcaagaagc tgcgcagtgc
     4501 cgacggcagg tgcgtgccga tgaccgccag gactgcgaga gcaaaggcaa tatcggtcgc
     4561 ggtggggatc gcccacccgc gcagcacggc cgcgctgccc ccacgcacgg ccaccgtcgc
     4621 ggcatacatc acggcgggca cgaccacccc gctgagcgca gcggtcacgg gcactgccgc
     4681 cttggccggc gtgcgcagct cgccgacgac gagctcgcgc ttgagctcca gaccggcgac
     4741 gaagaagaac agtgcaagga ggccgtcgga agcccactgg gccaacgtga ggctcagctg
     4801 gagttgcggc ggtccgatgc tccagtcgcg cagcgcctcg tagccgtgga aggcgggcgt
     4861 gttctcccac accagcgcga ccagcgccgc gagcaacagc agcgcgccgc cgacagtctc
     4921 ggtgcgtagg gcggccgcga cgaactgggt ctccgtccag gtcggacggg cgaagattcg
     4981 aggccgacgc gggctgaggc tcacgaccgc ccctttcggt aagccttggg gccgtaagcc
     5041 taacggtggc gcggtgcgcg tgcggatgcg cgcaaggtct cgaacatggc actcagctcc
     5101 gcctcgacga cgtcatccgc ggtgacctcc ccggcctggc tgaccgtcga gccgaacgac
     5161 aggctgggag cgtcgacgac cgtcatcttg atgcgctcga gggtctggcg gagtgccgac
     5221 cgggcgaagc tggcgccgtg ccagccgtac ccgacgcagg ctacgggcag gccctcccac
     5281 tcggcataga ggaagtcgat ggcgttcttc agggcggcgt tgtacccacg gttgtactcc
     5341 ggcatgacca gcacgagcgc atcggtcgcg agcatcgcgg cggaccagcg tcgggtgtgc
     5401 tcgtgggcgt agttaccggc cgcaggttgc gcaggctcgt cgaggaaggg cagatccaga
     5461 gtgcgcaggt cgtgcagcgt cgtctcgaag tcgtccggaa ccgcgtcgag cacccattgc
     5521 gcgacccgtg ggccgatccg ttgcgggcgg gtgctggcga cgacgacgga caggcgtggc
     5581 atgtcccgaa gtgtgtcagg cgcacgccgg cagctcgcgt cgaccgtcga ccgttcgacc
     5641 gccgatcacc tttgggcgcc caggggcgcc tagcccgaac ggctgccgac gatcgggtga
     5701 acagtcgtct gggagctcgt tttcactggg agggggcggt gttggtgggc actctggagt
     5761 catggcgtac ggagccgagc tcagtccgat cgcgctggcc catcggggcg gcgccggtct
     5821 cgcgcccgaa aacaccctgg ctgcgttcgg cctcgcgagc gcgttggggg ttcggtacct
     5881 cgagacggac gtccggctca gtgcagacgg gcacctggtc tgcttccacg acgaccggct
     5941 ggaccgggtg acgggacacc gaggaccagt gcgacggcac actctcgcgt cgctccgcgc
     6001 catgcgcgtg ggtggaaccg agcagatccc caccctcgcc gaggcgctcg aggcgtttcc
     6061 gcacgcccgg ttcaccgtcg acctcaagga tcgcgacgcc atcgcaccgc tggtctcgct
     6121 gctgaagcac cgcgacttcg cggaaagggt ctgtgtcgca ggggcctggg acgggtggct
     6181 ggcgtccgtg cggcttcagg ttcctcacgt cacgaccgcc ttgggctgga ggtcgctgac
     6241 cgcgctggtc ggagcctcca ggacgggtat gtcgccggct cgccggttcg ccacggcgga
     6301 gtttgcgcat gtcccgcttc gcctggggcg ggtgcccgtg ttcgtggagc gactcgtcga
     6361 gggtgcgcac cggatcggcg tgcgggtcat cgtgtggacc gtggacgaac cgcaccagat
     6421 gacccggctc ctggacgccg gggtcgacgg catcatcacc gatcgtccgg acctgctgcg
     6481 cgaggtgctc gtggcgcgtg accagtggct gcccatgctg cccacggcgc cgaatcgagt
     6541 acccgaggac gcggcttagt gcgtccgggt ccaacgaggg cacgcaacct cagtcctcgc
     6601 cggacccgga ggacatcccc tgcttgatga gccccatcac cgaggagtcg gccagcgtgg
     6661 tcacgtcacc cacctcgcgg ttctcggcca cgtcgcgcag cagccggcgc atgatcttgc
     6721 cgctgcgggt cttgggcagc tcggcgacga ccatgatcga gcgcggtttc gcgatcggcc
     6781 cgatctcctt ggccacgtgg ttgcgcagct cctggaccgt ggcgtcaccg tcgtcgtgga
     6841 agcccccgcg caggatgacg aacgcgacga ccgcctgacc ggtggtgtcg tcgctggccc
     6901 cgaccaccgc ggcctcggcg acggaggggt gcgacacgag tgccgactcg atctcggccg
     6961 tcgagagccg gtggccggag acgttcatga cgtcgtcgac ccggccgagc agccagatgt
     7021 tgccgtcggc gtcgtacttc gcaccgtccc cggcgaagta gtacttctcg ccgaaccgcg
     7081 accagtacgt ctccttgtac cgctccgggt cgccccagat gccgcgcagc atccctggcc
     7141 acggtttggt cagcaccagg tagccgacag cttcggggtc gcgcaggggc ttgccctcgt
     7201 cgtcgaggat ctccgcgctg atgccgggga tcggccgctg cgccgagccg ggctcgaggg
     7261 tggtcacgcc aggcaacggg ctgatcatga tcccgccggt ctccgtctgc caccaggtgt
     7321 ccacgatcgg acaccggtca gagccgatgt gcttgcggta ccacaaccac gcctcggggt
     7381 tgatcggctc gcccaccgag ccgagaaccc gcagcgaggt gaggtcgaac ttcgcgggga
     7441 ggtcgtcgcc ccacttcatg aacgtccgga tcgcggtggg cgcggtgtag aggatggaca
     7501 ccttgtactt ctcgatgatc tcccaccacc ggccctggtg tggggtgtcc ggcgtgccct
     7561 cgtagatcac ctgggtcgcg ccgttggcca acggcccgta gacgatgtac gaatgcccgg
     7621 tgacccagcc gatgtcggcc gtgcaccagt acacgtcggt ctccgggtgc acgtcatgca
     7681 cgaccgagtt cgtgtatgcc gcctgcgcga ggtagccccc ggtggtgtgg aagatgcctt
     7741 tgggctttcc ggtggtgccc gaggtgtaca ggatgaacag cgggtgctcg gcgtcgtgcg
     7801 gctgcgcctc gtggacgtcg ctggcagcct cgaccgcctc gtgccaccac acgtcgcgcc
     7861 cctggaccca gtcgaccttc tcgttggtgc gtcgcaccac cagcaccttc tcgacggtcg
     7921 tctcaccgtc aagggcggcg tcgaccgcgg gcttgagcgg gactgccttt ccgcggcgga
     7981 actggccgtc ggcggtgatg accaccttgg cctcggcatc ggcgatgcgg gtgcgcaggg
     8041 cgtctgccga gaacccgccg aacaccaccg aatgtggggc cccgatgcgc gcgcacgcca
     8101 gcatcgccgc gaccgcctcg ggcaccatcg gcaggtagat ggccacccgg tcgcccttgc
     8161 caacccccaa gccctgcaac gcgttcgcgg ccttcgccac gtcccgttgc aggtcggcat
     8221 acgtgatggt ccgggtgtcg ccgccctcgc cttcgaagtg gatcgccacg cggtcgccgt
     8281 tgccggcttc gacgtggcgg tccacgcagt tgtatgccgc gttgagctgg cccccgacgt
     8341 accacttcgc gaagggcgcg ccgctccagt ccagcgtcga ctcgaagtcc ttggcccagg
     8401 tgaggcgctc tcgggcctgc cgcgcccaga aggcctcgtg gtcggccgcc gcctcgtcgt
     8461 agagctctgc ccggccgttc gcggcctgcg cgaacgcgct gctcggctcg aacgacctcg
     8521 actgcgctga ctgcgacacg gtgaccctcc tggaacttcg cgatggcggc caaaccctga
     8581 ggacgaggcc acggaacacc ccacagccaa ctcgcatccg gccttcgcat caaggggacg
     8641 accgatccgt ggctatccgg cgcaaccttc ggacaaccga ctacgctcgc gtcgtgaaca
     8701 gcactcttcg tcgtgaccgc gctgaaatgc gccgggccgc ggaggctagc cgactcgggg
     8761 cgatcacccg ccgcttcggc cccgaggcct tgctgttgct cggggtgctc agctggtggc
     8821 ctgcgggctt ctgggggctt cagacctggc tgcagctgcc gttgcacatc ggacagggcg
     8881 atgtactttt cttcggagcc atcgccggtg ccgcctcggt ctcgctcttc gtgcgagccc
     8941 cgtggccgcg cttcggagtc gtcctcgggt tcagcgtcat cggctggctg ctgtcggcac
     9001 cgtctcgaga cagcgtgccg gccgaacgcc agacactggt gatcctgctg gcggccgctg
     9061 cgcttctagg catattgctc ggcgcgcgcg gtcaccggag tctgctggcg gccgcgacgg
     9121 tgctcgcgtt ggtggcgggg ctctctccgg ctacctggcc gcacgggctg ccgctggcgg
     9181 tggcgctcgc tcttccgttc ggggtcgcct cgtggcagaa ggtcgcgccc acgctggtgt
     9241 cgatagcgcg aatcctggtg atctggttgg tctttggact gctggccgcg gccgtgagcc
     9301 acgcctggcg agtggcgcat ttcgggtctg gcgccggcac ccgacagcat cagctcgggc
     9361 acgtgatcca ggaagcgtgg acttttgcca agagccaatg gtggtcgctg tcgcagcagt
     9421 cgctgtcgca tcaggtcggg tggttctggg tcgcggcggt gcttgccgtg ctcgtcgtcg
     9481 cgacccgggt cgtcaccagt ggtgcgcgac gtccagcacc aaccggctcc ccgtcgcgtc
     9541 ctggatcgtg aagacgcgga acggtagacg cgctcgcacg ccgagaccca tcgtggtctg
     9601 accttcgaaa gtccctgccc acgcgacctg gcggaacgtg gcatagcccg cgacgttcac
     9661 gacctcggcg
//
LOCUS       DASYFY010000218        13055 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1172024, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000218 DASYFY010000000
VERSION     DASYFY010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 13055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13055
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1172024"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VGN19_04225"
     CDS             <1..501
                     /locus_tag="VGN19_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEV7195124.1"
                     /translation="VIKAGAATEVELKERKHRIEDAVRNAKAAIEEGIVAGGGVALLQ
                     ATKAAFEKLELEGDEATGANIVRVAASAPLKQIAINAGLEGGVVAEKVSTLDAGWGLN
                     AATGEYVDLIAAGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEKAAPMAPGGDE
                     MGGMGF"
     gene            681..1478
                     /locus_tag="VGN19_04230"
     CDS             681..1478
                     /locus_tag="VGN19_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195125.1"
                     /translation="MSATPQRDLVTSDGHDAPAPAARVLGLTKIYGRGETQVRALDGV
                     TLDIATGEFTAIMGPSGSGKSTLMHCTAGLDSVTSGTVFIGDVDLTGLRDKALTTLRR
                     DRVGFVFQSFNLVPTLNARENILLPLAIAGREPESEWFDTVIDTVGLRDRLTHRPSEL
                     SGGQQQRVACARALMSRPEIVFADEPTGNLDSTSGAEVLGFLRRSVDEFAQTIVMVTH
                     DPVAASHTDRVVFLADGKVVDEMREPTAERILERMAELSAASRAIGG"
     gene            1482..4025
                     /locus_tag="VGN19_04235"
     CDS             1482..4025
                     /locus_tag="VGN19_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEV7195126.1"
                     /translation="MLRASWKSLLGRKLRLLMSGFAIILGVAFVSGSLIFTDTLGRAF
                     SGIVDTVGDVVVRPASARSGFDNSPTSVTLSGPLVRQLATVPGAARADGNVSDSTTFV
                     VSTKGKLIGGQGAPGLGLSYNDAPTAAGDPPAKIKQGRWPTRSGEVALDVLSAERAGY
                     TIGDQVVLATSGAQPIVRATLVGTVQFKSGGLVGATLSFFDTRTAQQLYLGGKDAYTD
                     AWVTARPGVSQDQLVKAVQARLPKGYQAISGAAAAKESQNAINQALSFISTFLLIFAG
                     VALFVGSFLIVNTFSILVAQRSRELALFRALGAARRQVTRSVLFEAFVVGLVGATLGL
                     GLGFLLALGIRALFATFGLDLSGSPLVFEWPTAFWSYAVGLVVTMVAAYLPARRAGKM
                     PPVAAMRDDVAMPEAALRWRLLVGGVLMLGGLGSLYVGSFTSVDNSAYYVGGGVLGLV
                     LGVALTSPIIGRPVIALCGLVYRRAFGAVGVMAEQNAVRNPRRTAATASALMIGLTLV
                     SMMSVFGASAKASVDKSIAQTFAADYVVSNAIGQPFSHQVTAEVAAVPGVQTVSPMRY
                     VRVKLNSDATFGAAIDPESFAKAVPLDMVSGSFHGASAQTVFLDDKTAAADHLVTGDT
                     VLAALGGAAREPLRVGGVFKHQTIAPSVLVTLDAATAAGLPTQDTLTYVLRQPGANAK
                     TVEAGIEKVIAGLPTVSLKDQNAFAAEQRQPIDQLLNLIYALLGLAVIIAVLGIINTL
                     ALSVIERTREIGLLRAVGLSRRQLRTMIRLESVAIALLGAVLGVVLGLGSGWALQRSL
                     AGDGIDVLSIPVTQLSVFVVVAGVVGILAALWPGRRAARLDVLKAITTE"
     gene            complement(4046..4336)
                     /locus_tag="VGN19_04240"
     CDS             complement(4046..4336)
                     /locus_tag="VGN19_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion target"
                     /protein_id="HEV7195127.1"
                     /translation="MSTQFQVDPQRISAASGDIARISGEIEGQVNAMMGRLQGLQDAW
                     TGTAAARFQTLVGEWHSTQRQVRASLDSISTVLGAAGAHYAETEAQTLRMFS"
     gene            4460..5200
                     /locus_tag="VGN19_04245"
     CDS             4460..5200
                     /locus_tag="VGN19_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020016189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4031 domain-containing protein"
                     /protein_id="HEV7195128.1"
                     /translation="MTIWIDPPAWPAHGRLWSHLISDLSYAELHDFAAAQGVSRRAFE
                     GDHYDVPDDLYAHLVSAGARPVAGRDLVRILRGSGLRIQKRTRERVVASFSEPSWLPP
                     GSRVDVIASRQATPPVGTVVVRLATLVGLEVMLAVAPDGRLDLPSAKVERDDVGNTVA
                     RLRAALDGPRDRPVSLLGYVRHTVPDPDVTYPWPTPTASFAVYLESREVDTTAPPGAG
                     RWVSLAASASLVGDRDWWPLVAPLGQSS"
     gene            5197..5706
                     /locus_tag="VGN19_04250"
     CDS             5197..5706
                     /locus_tag="VGN19_04250"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEV7195129.1"
                     /translation="MSRLMARVEQATPAPGSRATVELWLSSVAVAENLVFAAMVILDD
                     GHGRYAVVFSPRRDEWGAPGGWREEGESVAGCARREVLEETGLQVPPADLRPVGYEIF
                     DPPPNRPGVPVGRYCLQVFRARADGSCRLVSSAPDAVDPAWVTELQLEKLCGRQFWWP
                     LVEAVVRRA"
     gene            complement(5724..6023)
                     /locus_tag="VGN19_04255"
     CDS             complement(5724..6023)
                     /locus_tag="VGN19_04255"
                     /inference="COORDINATES: protein motif:HMM:NF012354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEV7195130.1"
                     /translation="MLRAFLAVAEEGSVSAAAEQLGYSQPGLSHRIQTLERELGAVLF
                     RRRGNGMTLTREGQLLLPYARMTMAMMRDVNQAIAEFRELRNAARPPPERKDNRE"
     gene            complement(6208..6861)
                     /locus_tag="VGN19_04260"
     CDS             complement(6208..6861)
                     /locus_tag="VGN19_04260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195131.1"
                     /translation="MHALRTAWARDVAVLAPQAQPEAVDAVGSELVRRLAEPHRSYHT
                     VQHVVEVFRALEELADSGELNPIDATLARLAGWFHDAVYDPSARQGVNELASAELATD
                     RLFGLGLHQAEVGLVRRLVLGTTSHELTGDRTSAAFHDADLWILSAPPARYSQYLAQV
                     RREYAAVPDQAFGTGRAAVLRPFLERSSIFATATARDGWEDRARANLVGELESLHLR"
     gene            complement(6980..8998)
                     /locus_tag="VGN19_04265"
     CDS             complement(6980..8998)
                     /locus_tag="VGN19_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020014253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7195132.1"
                     /translation="MSVAPELKREQDYLEGARQALARMREQTLSLKVQAHDPISAEHL
                     ARTLHLRAASLQDDPSTTLFFGRIDTDESERWYIGRRHVADEAGDPLVIDWRAQMSTA
                     FYRASRAEPLSVVLRRRFGLDRGALTAYEDEHLQDRAENDVRSQILAEEIERPRVGPM
                     RDIVATIQPEQDEIVRAGADQTICVQGAPGTGKTAVGLHRAAWLLYAFRDRLARSGVL
                     VIGPNRAFLEHIAAVLPALGEVSVGHTTIEELVADVPVRAQDATPTAVLKGDARLAEV
                     LRYAVWSAVRPATDPLVVPRGVRKWRVAAYEVNEIIDELKTRGVRYDAARQMLPQRLA
                     HAVLLQMERAGDSPDDRVQDQVARSSVVKKYAQSLWPALDAKGVLFSLFSDAEGLARH
                     AEGLLSQDEQGLLLWQTPPRARSSARWSTADAVLLDELGDHIARTPSLGHVVLDEAQD
                     LSPMQLRAVGRRCSTGAATVLGDLAQGTTPWATDSWESSLAHLGKPGSHIEVLDRGFR
                     VPASVIEFAARLLPRVAPGLGAPVSVRDNPGRLEVLEVEKSRVLEVTVQTVVSEAAQP
                     GSVGVITPDAFVQEVSAQLSAAGVDHGVLGRDHGDIDHQIDIVPASVAKGLEFDRVVV
                     VEPAAIAAAEPDERTGLRRLYVVLTRAVSALTVVHSEPLPPELAQGRV"
     gene            complement(9136..10569)
                     /locus_tag="VGN19_04270"
     CDS             complement(9136..10569)
                     /locus_tag="VGN19_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEV7195133.1"
                     /translation="MTQTHAETQSQPETPSQPGTSSQPETQSHPGEPTAPVWFGQTQE
                     LTTQHPAFGGAPAGEHPAYPPVFQPPAGPPPSVPTRDGAEPAQPANRRRWTELTAVAA
                     LAAILASGGTYAATRLGDSQSSSAVSASTLGRGTDAGPVVQANANNPNWTATAAAVAP
                     SVVSITVATGQGTAQGSGVVIDGKGHVLTNNHVVSGMGAGATITVTLKDGRSYKATVA
                     GTDANTDLAVLTLTSPPSDLKPVALGNSSDLKVGDPVMAIGNPLGLAGTVTTGIVSAL
                     NRPVTTQADSTTPTDPFGQGSSGQSSDSTQVVTNAIQTSAAINPGNSGGALVNASGQL
                     VGINSSIASLGSSGTSQSGSIGIGFAIPVNEVKSIAAQLIATGSAQHAFLGVTLRDGT
                     ATDGASQRAGAEVTSVSAGTPAANAGLRKGDVVIGVNSDLVDSSLALVANIRERAVGD
                     KVTLTVLRSGKQVILSTTLVAKSTTTQ"
     gene            complement(10619..12124)
                     /locus_tag="VGN19_04275"
     CDS             complement(10619..12124)
                     /locus_tag="VGN19_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7195134.1"
                     /translation="MTNSPGPKSVRGAALDRLTRQLEALPLRLRLISVMVVLLLAALT
                     VTASATTVLMRQDLTSRVDQDLQRAWLSVAQQALDTLVRQQQGGATRLPSGYAVVFYP
                     ADGSNSVELDPTGESVRPAVPATLPLTSPHVRTNTPFTIGSHGGNTSWRAIAGRTRDY
                     SATFIVAVSLSSVDRTVRRLLLVELLIGLSVLLVCATAGWYAVHRAFRPLRQIEDTAA
                     AIADGDLTRRIPTRTAEDEVTSLSRSLNVMLAQIEQSFAAREASEERMRQFVADASHE
                     LRTPLAAVRGYAELYRQGAVRDTADVASAMSRIEGEATRMGGLVEDLLMLARLDDQRP
                     LQFGPVDLTVLAAEAAQDARAIAPDRTITVSGIEGPVAPAVAGGDESKLRQVVANLVS
                     NALNHTPAGSPVEIAVGLKDLRATAVLEVRDHGPGVDPQKARKVFERFYRADPSRMRG
                     HGGGSGLGLAIVAAIVNAHHGRIGVGQTPGGGATFVLQLPTANSQAYPRTP"
     gene            complement(12121..12828)
                     /locus_tag="VGN19_04280"
     CDS             complement(12121..12828)
                     /locus_tag="VGN19_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195135.1"
                     /translation="MTNALPEARLLVVEDEPNIRELLATSLRFAGFEVHVAGDGATAL
                     NLASNNEIDLVVLDVMLPDMDGFTVTRKLRDSGRQLPIVFVTARDSVDDKIKGLTVGG
                     DDYVTKPFSLEEVVARIRAVLRRTRGERDDSAALRFEDLELDEDSHEVLRAGRPIDVS
                     PTEFKLLRYLMLNPNRVLSKAQILDHVWDYDFRGESGIVESYISYLRRKIDVDGVPPL
                     IHTKRGVGYVLRRPPGA"
     gene            complement(12883..>13055)
                     /locus_tag="VGN19_04285"
     CDS             complement(12883..>13055)
                     /locus_tag="VGN19_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HEV7195136.1"
                     /translation="GRVLRPKGDGRTAHFYTVVSRDTVDAEFAAHRQRFLAEQGYSYR
                     IVDADELPSPTE"
BASE COUNT         1916 a         4371 c         4605 g         2163 t
ORIGIN      
        1 gtcatcaagg ccggtgccgc gaccgaggtc gagctcaagg agcgcaagca ccgcatcgag
       61 gacgccgtgc gcaacgccaa ggccgccatc gaagagggca tcgtcgccgg tggtggcgtg
      121 gctctgctgc aggccaccaa ggccgcgttc gagaagctcg agctcgaggg tgacgaggcc
      181 actggtgcga acatcgttcg cgtcgctgcc tcggctccgc tgaagcagat tgccatcaac
      241 gccggcctcg agggcggcgt cgtggcagag aaggtcagca cgctcgacgc aggttggggc
      301 ctcaacgccg cgaccggcga gtacgtcgac ctgattgctg ccggcatcat cgacccggcg
      361 aaggtcacgc gttccgctct gcagaacgcc gcgtcgatcg ccgcgttgtt cctcaccacc
      421 gaggccgtca tcgccgacaa gcccgaaaag gctgcgccga tggcccccgg tggcgacgag
      481 atgggtggca tgggcttctg acgaagcccg cgtaacccgg catacgccac agctgagggc
      541 ggtccaccga aaggtgggcc gccctcggtc gtgtctgagg gttccctcag ggtccagtca
      601 gggtcgatcc tgaaggcatc ggggggctgc aatccctacg gtttgaggag cacgccgcca
      661 accacgaacc gggagccgac atgagtgcaa caccccagcg agatctcgtc acgagtgacg
      721 gtcacgacgc gcccgccccg gccgctcgcg tgctcggcct gaccaagatc tacgggcgtg
      781 gggagacgca ggtccgggcc ctggacggcg tcacgctcga catcgccacg ggcgagttca
      841 cggccattat gggtccgtcg gggtccggca agtccacgct gatgcactgc accgcgggtc
      901 tggactcggt cacgagcggg acggtcttca tcggcgacgt cgacctcacc gggctgcgag
      961 acaaggcgtt gaccacactg cgccgggacc gggtcgggtt cgtcttccag tcgttcaacc
     1021 tcgtcccgac gctcaacgcc cgcgagaaca tcctgctgcc cctggccatc gccggtcggg
     1081 agccggagtc cgagtggttc gacaccgtca tcgacacggt cgggcttcgt gaccggctga
     1141 cccaccgtcc cagcgagctg tcgggtggac agcaacaacg agtggcctgt gcccgggccc
     1201 tgatgagtcg ccccgagatc gtgttcgcgg acgagcccac ggggaacctc gactcgacct
     1261 caggtgccga ggtgctgggg ttcctccgac gcagcgtgga cgagttcgct caaacgatcg
     1321 tcatggtcac gcacgacccg gtggcggcct cgcacaccga ccgcgtggtg ttcctcgccg
     1381 acggcaaggt ggtcgacgag atgcgcgagc ccaccgccga gcgaattctc gagcggatgg
     1441 ccgagctctc tgcggcctcc cgcgcgatag ggggctgacc catgcttcgt gccagctgga
     1501 agagtctgct ggggcgcaag ctgcgcctgc tcatgagtgg cttcgcgatc attctcgggg
     1561 tcgcgttcgt gtccgggtcg ctgatcttca ccgacacctt gggccgggcg ttctccggaa
     1621 tcgtcgacac cgtgggcgat gtcgtcgtcc gacccgcgtc ggcccgtagc ggcttcgaca
     1681 actctccgac gtccgtaacc ctcagcgggc cgctcgtccg gcagctcgcc accgtgcccg
     1741 gcgccgcgcg ggccgatggc aacgtcagcg attcgaccac cttcgtggtc tcgaccaagg
     1801 gcaagctgat cggtggccag ggggcgccag gcctggggct ctcatacaac gacgccccca
     1861 ccgccgctgg ggacccgccg gcgaagatca agcagggacg gtggccgacg cgttccggag
     1921 aggtggctct ggatgtcctg agcgcggagc gcgccggata cacgatcggc gaccaggtcg
     1981 tcctcgccac cagcggcgcc cagcccatcg tgcgggcgac cttggtcggc accgtgcagt
     2041 tcaagtccgg gggtctcgtc ggggccacct tgtcgttctt cgacacccgc accgcgcagc
     2101 agctctacct cggcgggaag gacgcctata cggatgcctg ggtgacggcg cgtccagggg
     2161 tgagccagga ccagctggtc aaggccgtcc aggcccgact gccgaagggt taccaggcga
     2221 tctccggagc ggccgcggcg aaggagtccc agaatgccat caaccaggcg ctgtccttca
     2281 tcagcacctt cctgctgatc ttcgccgggg tcgcgttgtt cgtcgggtcg ttcctgatcg
     2341 tgaacacctt ctcgatcctg gtggcccagc gcagtcgtga gctggcgttg ttccgcgccc
     2401 tcggcgccgc ccgcaggcag gtcacccggt cagtgctgtt cgaggcattc gtcgtcgggc
     2461 tggtcggcgc cactctcggc ctggggctgg gcttcttgct ggcgctgggg atcagggcct
     2521 tgttcgcgac gttcggactc gatctcagcg gctccccatt ggtcttcgag tggcccaccg
     2581 ctttctggtc gtatgccgtc gggctggtcg tgacgatggt cgccgcctac ctgccagctc
     2641 gccgggccgg caagatgccg ccggtcgcgg ccatgcgcga cgatgtcgcg atgccggagg
     2701 cggcgctccg ctggcgcctg ctggtcggcg gggtgctcat gctgggcggc ctcgggagct
     2761 tgtatgtggg ctcgttcacc tcagtggaca actctgccta ctacgtcggg ggcggggtgc
     2821 tcggcctcgt cctaggggtc gctctgacca gtccgatcat cggtcgaccg gtcatcgcgc
     2881 tgtgcggtct cgtctatcgc cgggccttcg gcgcggtcgg tgtgatggcc gagcagaacg
     2941 cggtacgcaa ccctcgccgc accgcggcca ccgcatctgc actgatgatc gggctgaccc
     3001 tggtgtcgat gatgtcggta ttcggcgcct cggcgaaggc cagcgtcgac aagtcgatcg
     3061 cgcagacctt cgccgccgac tatgtcgtgt ccaatgcgat cgggcagccg ttcagccacc
     3121 aagtgaccgc tgaggtcgcc gcggtgcccg gagtccagac cgtcagcccc atgaggtacg
     3181 tccgggtgaa gctcaacagc gatgcgacgt ttggtgccgc tatcgacccc gagagctttg
     3241 ccaaggccgt tccgctggac atggtgtccg gctcgttcca tggggccagc gctcagaccg
     3301 tgttcctgga cgacaagacg gccgccgcgg accatctggt gaccggcgac acggtgctcg
     3361 ccgccctggg tggcgccgca cgggaaccgc tcagggtggg aggggtcttc aagcaccaga
     3421 ccatcgcgcc gtcggtgctc gtgaccctgg acgccgccac cgcggcaggc ctaccgaccc
     3481 aggacaccct gacctacgtc ttgcgacagc caggagcgaa cgccaagacg gtcgaagccg
     3541 gcatcgagaa ggtcatcgcc ggactcccca cggtctcgct caaggaccag aacgccttcg
     3601 ccgcagagca gcgtcagccc atcgaccagc ttctcaacct gatctatgca ctgctcggcc
     3661 tcgcggtgat catcgccgtg ctgggcatca tcaacaccct ggcgctctcg gtgatcgagc
     3721 ggacccgcga gatcgggctg ctgcgcgccg tcgggctcag tcgacggcag ctgcgcacaa
     3781 tgattcggct ggagtcggtc gccatcgccc tgctcggggc cgtgctcggg gtggtgctcg
     3841 ggttggggtc cggctgggcc ctgcagcgca gcctggccgg cgacgggatc gacgtcctgt
     3901 cgatccccgt gacccagctg tcggtcttcg tcgtggtcgc aggtgtggtg ggcatccttg
     3961 ctgccctgtg gcctgggcgg cgagcggccc gcttggacgt gttgaaagcg atcacgaccg
     4021 agtagccccc gcgctgtggc cgcgctcagc tgaacatccg cagggtctga gcctctgtct
     4081 ctgcgtagtg cgctccggcg gcgcccagaa cggtgctgat cgagtccaga gatgctcgga
     4141 cctgccgttg ggtggagtgc cattcgccca ccagggtctg gaagcgggcg gcagccgtgc
     4201 ccgtccacgc gtcctggagg ccttgcagcc ggcccatcat ggcgttgacc tgaccctcga
     4261 tctcaccgga gatgcgggcg atgtcacctg acgctgcgct gatgcgctgt gggtcgacct
     4321 ggaactgtgt ggacatggtg tgctccttgc gtctgcgggg ccaccgtgac acccgcgcct
     4381 tcctcgaccg taggcggatg cagctgcgga cccccgccgt tatccacagc tcgcccggac
     4441 aggcagtagc gtcggtcggg tgaccatctg gatcgacccg ccggcctggc ctgcacacgg
     4501 acgcctgtgg tcgcacttga tcagtgacct gtcgtatgcc gagctgcatg actttgccgc
     4561 tgcccagggc gtatcgcgcc gagccttcga gggcgaccac tacgacgtgc ccgacgacct
     4621 gtatgcccac ctcgtttcgg caggcgcgcg gccggtcgca gggcgtgacc tggtcaggat
     4681 cctgcggggt agcggactgc gcatccagaa gcggactcgc gagcgggtcg tggcgtcctt
     4741 ctccgagccg tcctggctcc ccccaggtag ccgcgtcgac gtcatcgcct cgcgccaggc
     4801 cacgcctccg gtgggcacgg tcgtggttcg cctggcgacc ctggtcggcc tagaggtgat
     4861 gctggccgtg gcccccgacg gtcgcctgga cctgccctcc gcgaaggtcg agagggacga
     4921 cgtggggaac accgttgccc gcctgcgcgc cgccctcgat ggcccacgag accgtccggt
     4981 gagcctgctg ggctacgtgc ggcacacggt cccggatccc gatgtcacgt atccctggcc
     5041 gaccccgacg gccagctttg cggtctatct ggaatcgcgt gaggtggaca cgaccgcgcc
     5101 acccggcgcg ggccggtggg tctccctcgc ggcgtcggcc tcactggtgg gagaccgcga
     5161 ctggtggccg ctggtcgcac ccctgggcca gtcctcgtga gcaggctcat ggcccgcgtc
     5221 gagcaggcga ccccggcgcc aggctcgcgg gccacggtcg agctctggct ctcgtcggtt
     5281 gccgtggccg agaacctggt gttcgccgcc atggtgattc tcgatgacgg ccatggccgg
     5341 tatgccgtgg tgttcagccc gcgccgtgac gagtggggtg cgcccggcgg gtggcgcgag
     5401 gagggtgagt cggtggcggg ctgtgcgcgg cgcgaggttc tcgaggagac cggcctccag
     5461 gtgccacccg cagacctcag gccggtgggg tatgagatct tcgatccacc gccgaaccgt
     5521 ccgggcgtac ctgtgggcag gtactgcttg caggtattcc gggcgcgggc ggacgggagt
     5581 tgccggctgg tgagctcggc accagatgcc gtcgacccgg cgtgggtgac cgagctccag
     5641 ttggagaagc tgtgtggtcg gcagttctgg tggcccctgg tcgaggcagt ggtccgtcga
     5701 gcctgaggac gtgacgctcg cgttcactct cggttgtcct tgcgctcggg cggcgggcgg
     5761 gcggcattac gcagctcgcg gaactccgcg atggcttggt tgacgtcgcg catcatggcc
     5821 atcgtcatgc gggcgtaagg gagcaggagc tggccctcgc gggtcagtgt catgccgttg
     5881 ccgcggcgcc ggaacagcac ggcccccagc tctctctcga gggtctggat ccggtggctc
     5941 agacccggtt gggagtagcc gagctgctca gctgccgccg agacggagcc ctcctcggcg
     6001 actgccagga aggctctcag caactgcaaa tccaatgggt cccccggact gtgtgatgtg
     6061 tcccgcccca acaaaacagc cgacccgacg agatgcaacg agctattcga atctcgaatg
     6121 tagggttgac aactgacggt cctgtgtgag tcgaaatgct ctgtggacaa cgtcgagtta
     6181 tcgcggtgat cgtggcgcga tgacgcgtta cctgaggtgc agggactcaa gctcgccaac
     6241 gaggttggcc cgcgctcggt cctcccagcc gtctcgagcc gtcgccgtgg caaagatgga
     6301 gctgcgttcc agaaatggcc gaagcaccgc ggcacgtccg gtcccgaagg cttggtcggg
     6361 tacggcggca tactcacgtc tgacctgggc gaggtactgc gagtaccgcg ctggcggggc
     6421 cgacaggatc cacaggtcgg catcatgaaa ggcggcggac gttcggtcgc cggtcagctc
     6481 atgactggtt gtgccaagca ccaggcgacg caccagcccc acttcggcct ggtgcagccc
     6541 caggccgaac agcctgtcag tggcgagctc ggcgctcgcc agctcgttga ccccctggcg
     6601 agcgctgggg tcatacaccg catcgtggaa ccagccggcg aggcgggcga gggttgcatc
     6661 gatggggttg agctctccgc tgtccgccag ctcctcgagc gccctgaaca cctccaccac
     6721 atgctggacg gtgtgatagc tgcgatgcgg ctcagccaac cgccggacca gctcgctccc
     6781 gacggcatcg acggcctcag gctgcgcctg cggggcgagt acggccacgt cacgagccca
     6841 ggcggtgcga agagcgtgca cctgccgagt ctcgcagacg tcacacttgc gggcctggaa
     6901 cgtcccatcc ccgaccggtc aaggggatga caggtcagct ggacggcagg caccgcccca
     6961 atgcgcctgc cgtccagcgc tagaccctcc cctgagcgag ctcaggcggg aggggctcac
     7021 tgtggaccac ggtcagtgcc gagaccgcgc gagtgagcac gacatagagc cgccgcagtc
     7081 ccgtccgctc gtcaggctcc gccgcggcga tcgcggcggg ctccacgacc acgacccggt
     7141 cgaactccag gcccttggcg accgacgccg gcacgatgtc gatctgatgg tcgatatcgc
     7201 cgtggtcgcg acccagaaca ccgtggtcga cccccgccgc gctgagctgg gccgagacct
     7261 cctgcacgaa tgcgtctggg gtgatcaccc cgaccgagcc aggctgcgca gcctcggaca
     7321 ccacggtctg cacggtcacc tcaagcaccc gcgacttctc cacctcgagc acctcgagcc
     7381 gaccggggtt gtctcgtacc gagaccggag cgccaagccc aggggcgacc cgaggcagca
     7441 gccgtgcggc gaactcaatg acgctcgccg gaacgcggaa gccgcggtcc aggacctcga
     7501 tgtggctgcc gggcttgccc aggtgcgcca gggaggactc ccaggagtcg gtcgcccacg
     7561 gggtcgttcc ctgggccaga tcgccgagta cggtcgcggc gcccgtcgag cagcgtcggc
     7621 ccactgcccg cagctgcatc ggcgagagat cctgggcctc gtcgagcacc acgtgtccga
     7681 gggatggcgt ccgggcgatg tggtcgccca gctcgtcgag cagaaccgcg tccgcggtcg
     7741 accaccgcgc ggagctgcgg gcgcgcggcg gggtctgcca cagcagcagg ccctgctcgt
     7801 cctgcgagag gagaccctcg gcgtgccggg cgagcccctc ggcatcggag aacagggaga
     7861 acagcacgcc tttggcatcc agggcaggcc acagcgactg tgcgtacttc ttgaccaccg
     7921 acgagcgcgc tacctggtcc tgcacgcggt cgtcggggga gtcgccggcg cgctccatct
     7981 ggagtagtac cgcgtgggcc agacgttgcg gcagcatctg acgggccgcg tcgtagcgca
     8041 ctccccgggt cttcagctcg tcgatgattt cgttgacctc gtacgccgca actcgccact
     8101 ttcgcacccc gcggggcacc acgagcgggt ccgtggccgg acgcacggcc gaccacacgg
     8161 cataccggag gacttcggcg aggcgggcat cgcctttgag cactgcggtg ggggttgcat
     8221 cctgcgctcg cacgggcaca tcggccacga gctcctcgat ggtcgtgtgg ccaacggaca
     8281 cctcgcccaa ggcgggcagc acggcggcga tgtgttcgag gaaggcgcgg ttggggccga
     8341 tcaccagcac acctgaacgc gccaggcggt cgcggaaggc gtacagcagc caggccgcgc
     8401 gatgcagccc gacggcggtc ttgcccgtcc ccggtgcccc ttggacacag atggtctggt
     8461 cagcaccggc cctgacgatc tcgtcctgct cgggctgaat cgtggccacg atgtcgcgca
     8521 tcggacccac ccggggacgt tcgatctcct cggcaaggat ctggctacgg acatcgttct
     8581 cggcgcgatc ctggagatgc tcgtcctcgt aggcggtgag cgctccccgg tcgaggccga
     8641 accggcgccg caacaccacg ctcaggggct ccgcacgcga cgcgcggtag aaggccgtgg
     8701 acatctgagc ccgccagtcg atgaccagcg gatccccggc ctcgtcggcc acatgccgcc
     8761 gtccgatgta ccaccgctcg gactcatcgg tgtcgatccg tccgaagaac agcgtcgtgg
     8821 acgggtcatc ctgcaacgag gcggccctca ggtgcagcgt ccgcgccagg tgttcggccg
     8881 agatcgggtc gtgggcctgg accttgagcg acagggtctg ttcgcgcatt cgcgcgaggg
     8941 cctgccgcgc gccctcgaga tagtcctgct ctcgcttcag ctcgggggcg acagacacaa
     9001 gggtctacct tgccactacc acgactccgg gcctaacgag ttttccttgc gctggtcagg
     9061 cgttggtcac gcgctggtcg tcggccagtc ggggcgaggc tcgccccgac cggccggacg
     9121 ttgagggcgc ggcggtcact gcgtggtcgt ggacttcgcg acgagagtgg tcgacagaat
     9181 gacctgcttg ccggaccgca ggaccgtcaa ggtcaccttg tctccgaccg cgcgctcccg
     9241 gatgttggcg accagggcca gcgaggagtc gaccaggtcg ctgttcactc cgatcacgac
     9301 gtcgcccttg cgcagccctg cgttggccgc aggagttccc gcgctcacgc tcgtgacttc
     9361 ggcgccggcc cgctggctgg ccccgtccgt ggccgtcccg tcgcgcaggg tcacgcccag
     9421 gaaggcatgc tgggcgctcc cggtggcgat cagctgggcg gcgatgctct tgacctcgtt
     9481 gaccgggatg gcgaagccga tcccgatgct tccgctctgg ctggtccccg acgagccgag
     9541 ggaggcgatc gaggagttga tccccacgag ctgcccgctg gcgttgacga gggcgcctcc
     9601 ggagttgccg gggttgatcg ccgctgaggt ctggatggcg ttggtgacga cctgggtcga
     9661 gtcgctgctc tgcccgctgc tgccctggcc gaaggggtcg gtgggcgtcg tcgagtcggc
     9721 ctgggtggtg actggccggt tgagtgcgct gacgatgccg gtggtcaccg tgccagcaag
     9781 acccaggggg ttgccgatcg ccatgacggg gtcgccgacc ttgaggtcgc tggagtttcc
     9841 gagggcgacc ggcttgaggt cgctgggcgg gctggtcagg gtcaagaccg ccaggtcggt
     9901 gttggcatcg gtgcccgcca ccgtggcctt gtagctgcgg ccgtccttca aggtcaccgt
     9961 gatcgtggcg cccgcaccca ttccactgac gacgtggttg ttggtcagga cgtgcccctt
    10021 cccgtcgatg acgacgcccg aaccctgcgc ggttccctgt ccggtggcga cggtgatcga
    10081 gacgacgctg ggcgcaacgg cggcggcggt ggcggtccag ttggggttgt tggcgttggc
    10141 ctggaccacc ggtccggcgt cggtgccgcg acccagcgtg gacgcgctca cagcggagga
    10201 ggactgtgag tcgcccaacc gggtcgcggc ataggtgccg ccactggcca ggatggcggc
    10261 gagggccgcg acggcggtga gttccgtcca tcggcgccga ttggccggct gggcaggctc
    10321 tgccccgtcc cgagtgggaa cggaaggggg cggcccagcc ggtggctgga agaccggcgg
    10381 gtatgccggg tgttcacctg caggcgcccc accgaaggcg gggtgctggg tggtcagctc
    10441 ctgggtctgc ccgaaccaga ccggagcggt gggctctccc gggtgggact gggtctcagg
    10501 ctgggacgac gtccccggct gtgacggggt ctcaggctgg gactgcgtct ccgcgtgggt
    10561 ctgggtcatg gctgcactcc tcggtctggc ttggtgactt cagtcaaacc gtcgaacgtc
    10621 aaggagttct ggggtaggcc tgagagtttg ctgtgggcag ctgcaggacg aaggttgccc
    10681 cgcccccagg tgtctggccc actccgatgc gcccgtggtg ggcattgacg atggctgcga
    10741 cgatggccag ccccagaccg ctgccgccac catggccgcg catgcgcgag gggtccgccc
    10801 ggtagaagcg ctcgaacacc ttgcgggcct tctgcgggtc cacgcccggt ccgtggtcgc
    10861 gcacttcgag gacggctgtg gcgcgaaggt ccttcagccc cacagcgatc tcgacgggcg
    10921 accccgccgg ggtgtggttg agggcgttcg acaccaggtt cgccaccacc tggcgcagct
    10981 tggactcgtc gccccccgcg accgccggcg ccaccgggcc ctcgatgccg ctcacggtga
    11041 tggtccggtc cggggcaatg gcgcgggcat cctgggccgc ctcggccgca aggaccgtga
    11101 ggtcgaccgg accgaactgc aagggccgct ggtcgtcgag ccgggcgagc atgagcaggt
    11161 cctcgacgag gccccccatg cgggtggcct caccctcgat cctcgacatc gcgctggcga
    11221 cgtcggcggt gtcccgcact gcgccttgcc gatacagctc ggcgtaccct cggacagcgg
    11281 cgagtggagt gcgcagctcg tgcgaggcgt cggccacgaa ctggcgcatc cgctcttcgg
    11341 aggcttcgcg agccgcgaac gactgctcga tctgggcgag catgacgttg agcgaccggg
    11401 acagcgaggt cacctcgtcc tccgctgtgc gggtggggat gcggcgggtc aggtcgccgt
    11461 cggcgatcgc ggcggcggtg tcctcgatct gacgcaacgg gcggaaggcg cgatgcacgg
    11521 cataccaccc agccgtggcg cacaccagga ggacggaaag tccgatgagg agctcgacca
    11581 ggagcaaccg gcgcactgtc cggtcgacac tcgagaggga gacggccacg atgaaggtcg
    11641 ccgagtagtc ccgggtccgc ccggcgatcg cgcgccagct ggtgttgccg ccgtgcgagc
    11701 cgatggtgaa gggcgtgttc gtgcggacgt gcgggctggt cagcggcagc gtcgcgggca
    11761 ccgcgggacg caccgactca ccggtcgggt cgagctcgac ggagttggac ccgtcggccg
    11821 ggtagaacac gaccgcgtac ccgctcggca gcctggtcgc gccgccttgt tgctggcgca
    11881 cgagggtgtc cagggcctgc tgcgccacgc tgagccacgc gcgttggaga tcctggtcga
    11941 cgcggctggt caggtcctgt cgcatgagca cggtcgtcgc cgaggcagtg accgtcagcg
    12001 cggctagcag gagcaccacc atgaccgaga tcagcctcag gcgtagtgga agcgcctcaa
    12061 gctgccgggt gagccggtcg agggctgctc cgcggacact cttggggcca gggctgttgg
    12121 tcatgctccg ggcggccggc gtagcacgta gcccacgcct cgcttggtgt ggatcagcgg
    12181 tgggacaccg tccacgtcga tcttgcggcg caggtaggag atgtaggact cgacgatccc
    12241 gctctcgccg cggaagtcgt agtcccagac gtggtccaga atctgcgcct tcgacagcac
    12301 gcggttcggg ttgagcatca ggtaacggag cagcttgaac tccgtggggg agacgtcgat
    12361 cgggcggccg gcccgcagca cctcgtgcga gtcctcgtcg agctccaggt cctcgaaccg
    12421 cagtgccgcg ctgtcgtccc gctcgccacg ggtccgtcga aggaccgcgc ggatccgcgc
    12481 gacgacctcc tcgagactga agggcttggt gacgtagtcg tccccgccga cggtcagtcc
    12541 cttgatcttg tcgtccacgg agtcgcgcgc cgtgacgaag acgatgggca gctggcgacc
    12601 gctgtcgcgc agcttcctgg tgaccgtgaa accgtccatg tcgggcagca tcacgtcgag
    12661 gacgaccagg tcgatctcgt tgttgctggc caggttcagg gccgtggctc cgtcgccggc
    12721 gacatggacc tcgaaaccgg cgaagcgcag cgaggtggcg agaagctcgc ggatgttggg
    12781 ttcgtcttcg acgaccagca ggcgcgcctc gggcagggca ttggtcaccg tctcagtgtt
    12841 gtgccggatc ctgagagtgt cctgtatgcc gtctgggtgt tctcactcgg tcggtgaggg
    12901 cagctcgtcg gcgtccacga tgcggtagga gtaaccctgc tcggctagga accgctggcg
    12961 gtgcgcggcg aactcggcat cgacggtatc ccgggacacg accgtgtaga agtgcgcggt
    13021 tcgcccgtcc cccttggggc gcagcacccg accga
//
LOCUS       DASYFY010000219         3493 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_174172, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000219 DASYFY010000000
VERSION     DASYFY010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174172"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..664)
                     /locus_tag="VGN19_04290"
     CDS             complement(<1..664)
                     /locus_tag="VGN19_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEV7195137.1"
                     /translation="MSLAAFGAGWIDAVVGGGGLVQLPALLLAFPGASPAQLLGTNKL
                     SSIFGTTTSAVTYWRRVRPDLRTALPMAGVAYLGAIGGALLGLHLPKSAFNPVILAML
                     VVVGAYTVAKPALGEETALRFAGHRHTVVAMLTGFVIGVYDGALGPGTGSFLVFALVG
                     LMGYAFLEASAKAKIANFATNLGALTVFIPGGHVMWGIGAVMAVANIAGGYAGARTAV
                     ARG"
     gene            complement(697..1470)
                     /locus_tag="VGN19_04295"
     CDS             complement(697..1470)
                     /locus_tag="VGN19_04295"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEV7195138.1"
                     /translation="MGGSPLRAVIFDWGGTLTPWHEVDLPAQWRVFAREVHGLPVEDT
                     HMSPEDLAEADSLAVRLHQAEEQAWSRGRETHQSASIAEILREAGVDPAHDRHHLALA
                     AYQRFWEPHTHTDPQVRPLWQGLRERGLRVGVLSNTIWTRAYHREVFQRDGVLDLLDG
                     DVYSSEIHCVKPHADAFRAACDAVGVQPLEAAYVGDRLFEDVHGPQQLGMRAIWIPHS
                     DIPRSQQVAIDATPDAEAHQLLDILDIIDGWLAEGPRPA"
     gene            complement(1470..3278)
                     /locus_tag="VGN19_04300"
     CDS             complement(1470..3278)
                     /locus_tag="VGN19_04300"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEV7195139.1"
                     /translation="MALRMSTLFLRTLREDPADAELPSHRLLVRAGYIRRVSPGIYTW
                     LPLGLRVLRRVETIVREEMDAMGAQELLFPALLPKEPFEATGRWEEYGNNIFRLQDRK
                     GADYLLGPTHEEMFTLTVKDLFSSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMK
                     DSYSFDLDEAGLDKAYQLHRDAYIRIFNRLGFHYVIVQAMAGAMGGSKSEEFLATADN
                     GEDTYVRCANCGYAANVEAVRVPVPDPLPYGDVPAAHAEDTPGTPTIETLVAHLNARF
                     PREDRAWTAADTLKNVLVMVVQPDGTREPLAIGVPGDRDIDEKRLGAQVEPAAVEAFE
                     EKDFAANPTLVKGYIGPGALGAESASKVRYLLDPRVVEGTRWVTGANTPGQHVIDLVA
                     GRDFTADGTIEAAEVRAGDGCPSCGHELEIARGIEMGHIFQLGRKYAEALDLKVLDQN
                     GKLQTVIMGSYGVGVSRAVACVAEGNHDEFGLVWPREISPADVHLVATGKDDEVFTAS
                     EEITRELEAQGLTVLFDDRRGVSPGVKFKDSELIGVPTIVVVGRGLADGTVEIKDRAS
                     NERRTLPVDDVVAEVVRTVRDGQRDDRRGGRRGGVV"
BASE COUNT          536 a         1200 c         1228 g          529 t
ORIGIN      
        1 tgccgcgggc cacggccgtt cgcgccccgg catagccgcc ggcgatgttg gcgacggcca
       61 tgaccgcacc gatcccccac atcacgtgac cccctgggat gaacacggtg agcgctccga
      121 ggttggtggc gaagttcgcg atcttggcct tggcgctggc ttccaggaag gcgtacccca
      181 tcagacccac caacgcgaac acgaggaagg accccgtgcc cggacccagc gcgccgtcgt
      241 agacgcctat gacgaatccg gtcagcatcg ccacgaccgt gtgccggtgc ccggcgaagc
      301 gcagcgcggt ctcttccccg agagcgggct tggccacggt gtaggcccca accaccacga
      361 gcatcgcgag gatgaccggg ttgaacgcgc tcttgggaag gtgcaggccc agcagcgctc
      421 ccccgatcgc gccgaggtag gccaccccgg ccatgggcag cgcggtgcgc aggtcgggac
      481 gcaccctgcg ccagtaggtg accgcgctcg tggtcgtccc gaagatcgag gacagcttgt
      541 tcgtgcccag aagctgggcg gggctggccc cagggaacgc cagcaggagg gcgggcagct
      601 gcaccagtcc cccaccgccg acgacggcgt cgatccagcc ggcgccgaac gctgcgagcg
      661 acatcagcag aacggtgctg accgccagat gccccactag gcgggccgcg ggccctcggc
      721 cagccacccg tcgatgatgt ccaggatgtc caggagctgg tgcgcctcgg cgtcgggggt
      781 ggcatcgatg gcgacctgct ggctgcgagg gatgtccgag tgcgggatcc agatggcgcg
      841 catgcccagc tgctggggtc cgtggacatc ctcgaacaag cggtccccga cataggccgc
      901 ctcgagcggc tgcactccca cggcatcgca cgccgcccgg aacgcgtccg catgcggctt
      961 cacgcagtgg atctccgagg agtagacgtc tccgtcgagc aggtcgagca cgccgtcccg
     1021 ctggaagacc tcgcggtggt aggcccgcgt ccagatcgtg ttggacagca cccccacgcg
     1081 cagtccacgc tcccgcagtc cttgccacag cggccggacc tgcgggtcgg tgtgcgtgtg
     1141 cggctcccag aagcgttggt atgccgcgag cgccagatgg tggcggtcgt gcgccggatc
     1201 gacgccagcc tcacgcagga tctcggcgat cgaggcgctt tggtgcgtct cccgaccgcg
     1261 ggaccaggcc tgctcctcgg cctggtggag gcgcacggcg agggagtccg cttcagccag
     1321 gtcttcgggg gacatgtggg tgtcctccac gggcagccca tgcacctccc gagcgaagac
     1381 ccgccactgc gcgggcaggt cgacctcgtg ccagggggtg agagtgccgc cccagtcgaa
     1441 gatcactgcg cgcaacgggc taccgcccat cagacgacac cacctcgccg gccgcctcga
     1501 cgatcgtccc gctggccgtc ccgcacagta cggacgacct cggcgacgac gtcgtccacg
     1561 ggcagcgtgc ggcgctcgtt gctggcgcgg tccttgatct cgaccgttcc gtcagcaagg
     1621 ccccggccca ccacgacgat ggtgggaacg ccgatgagct cggagtcctt gaacttcacc
     1681 ccggggctga cgccacggcg atcgtcgaag agcacggtga ggccctgggc ctcgagctcg
     1741 cgggtgatct cctcggaggc ggtgaagacc tcgtcatcct tgccagtggc gaccaggtgc
     1801 acgtccgccg ggctgatctc ccgcggccag acgaggccga actcgtcgtg gttgccctcg
     1861 gccacgcagg ccacggcacg cgacacaccc acgccatagg accccatgat gacggtctgg
     1921 agcttgccgt tctggtccag aaccttgagg tcgagcgcct cggcgtactt gcggccgagc
     1981 tggaagatgt ggcccatctc gatgccccgg gcaatctcga gctcgtggcc gcagctgggg
     2041 cacccgtcgc cggcccggac ctcagccgcc tcgatcgtgc cgtccgcggt gaagtcgcgg
     2101 cccgccacga ggtcgatgac atgctggccg ggcgtgttgg cgccggtgac ccatcgggtg
     2161 ccctcgacca cgcgcgggtc gagcaggtag cggaccttcg atgccgactc ggcgccgagc
     2221 gccccgggcc cgatgtaccc cttgaccaga gtggggttgg cggcgaagtc cttctcctcg
     2281 aaggcttcga cggcggctgg ctcgacctgg gcaccaagcc gcttctcgtc gatgtcccgg
     2341 tctccgggca cgccgatcgc gagcggctcg cgggtgccgt ccggctggac caccatgacg
     2401 agcacgttct tgagcgtgtc ggccgcggtc cacgcgcggt cctcgcgggg gaacctcgcg
     2461 ttgaggtggg cgaccagcgt ctcgatggtg ggcgtgccgg gggtgtcctc ggcatgcgcg
     2521 gccggcacgt cgccgtacgg cagcgggtcg gggaccggca cgcgcacagc ctcgacgttc
     2581 gcggcatacc cacagttggc acaccgcacg taggtgtcct cgccgttgtc cgcggtggcg
     2641 aggaactcct cggacttcga cccgcccatc gcgccggcca tcgcctggac gatgacgtag
     2701 tggaagccga gccggttgaa gatccggatg taggcgtcac ggtggagctg gtacgccttg
     2761 tccaggcctg cctcgtccag gtcgaaggag tacgagtcct tcatcacgaa ctcgcgtccg
     2821 cgcaggagac cggcgcgcgg ccgggcctcg tcgcggtact tggtctggat ctggtagatc
     2881 gacagcggca ggtccttgta cgacgagaac aggtccttga ccgtgagggt gaacatctcc
     2941 tcgtgggtgg ggccgagcag gtagtcggcg cccttgcggt cctggaggcg gaagatgttg
     3001 ttgccgtact cctcccagcg cccggtggcc tcgaagggct ccttgggcag caaggcaggg
     3061 aacagcagct cctgtgctcc catggcgtcc atctcctcgc gcacgatggt ctccacgcga
     3121 cgcagcaccc gcagcccgag cggcaaccag gtatagatgc cagggctgac acgtcggatg
     3181 tagccggctc gcaccaggag ccggtggctc ggcagctcgg catcggccgg gtcctcgcga
     3241 agggttcgca ggaacagggt cgacatgcgc agggccacgg gatctcctca gttcgtgggc
     3301 aacgccctga ggatataggc cgccggcaga ctggcaggac gccctagcgc ctgtggccct
     3361 agcgcccggt ggctcgaagc gccgtgcgga tgagcggcac ctgaagcgga agccgagcga
     3421 gggtagcggc gaaggccgtc tgggcggccg gggtgccctt gcgacgggcg cgcttgccgt
     3481 agttagcgct cat
//
LOCUS       DASYFY010000220         1628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_646226, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000220 DASYFY010000000
VERSION     DASYFY010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_646226"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..918
                     /locus_tag="VGN19_04305"
     CDS             196..918
                     /locus_tag="VGN19_04305"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEV7195140.1"
                     /translation="MADPAEAARPTSGNARLCFVLTVVVLVGFSVARAFGYVGPPIVS
                     AFTLTAAILLVAWASGMTPADLGLARQDLPAGLRYGLGAFALVVLVLVVAAVIPFTDS
                     FLHDSRAQISGGRLAYQVGVTVVLLTAVPEELAFRGALLGSALGLWPQRSATIVSSAL
                     FGLWHVWPTLDTMSDNPAVSGASGSLAGQVGVVLGAVVVTFVAGLLFCWLRLRSRSLL
                     ASFLAHVATNGVALVVAWFVVH"
     gene            complement(955..>1628)
                     /locus_tag="VGN19_04310"
     CDS             complement(955..>1628)
                     /locus_tag="VGN19_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta-hydrolase family protein"
                     /protein_id="HEV7195141.1"
                     /translation="SWLSYLVDQKKAREAGRALFDAVYDRWSKLPQDQRPKLYVAGES
                     LGSFGAETAFSGEYDLRNRTAGTLFAGPPNFNTLFREFSDNRDKGSLEIQPVYKAGRT
                     VRFAEDTSADIPPDNQPWDGTRVLYMMHASDPIVWWSPSLVLQKPDWVSEPPGKDVLE
                     RTVWIPFVTFWQVTADLPFATGVPAGHGHKYTGEYVDGWNATMRPSGITPDDLAQIKA
                     VISKG"
BASE COUNT          204 a          539 c          568 g          317 t
ORIGIN      
        1 acacgggttc ggtgttggcc cactgggcgt cggccgcggc atcggtgaag cggtggttga
       61 ggatccgcca cagggcgcgg ttgagggcga tctccgcggc ccggtcgtgc gtcacgccgt
      121 cagcgtatgc cggtccccgc accggcccct cgtcatctac ccgggtttgt gcggccccgg
      181 cggtaggttc gcgggatggc ggatccagcg gaagccgcac gaccgacgag cgggaacgct
      241 cgtctctgct tcgtcctcac cgtcgtcgtc ctcgtcgggt tcagcgtggc ccgggcattc
      301 ggatacgtcg ggccgcccat cgtgtctgcg ttcaccctca ccgcggccat cctgctggtg
      361 gcctgggcca gcgggatgac ccccgcggac ctcggcctcg cgcgccagga cctgccagcc
      421 ggcctgcgct acggccttgg agccttcgcg ctggtggttc tcgttctcgt ggtcgcggcg
      481 gtgatcccct tcaccgactc cttcctgcac gactcgcgcg cacagatcag cggtgggcgt
      541 ctggcgtacc aggtcggagt gacggtcgtc ctgctgacag ccgtgcccga ggagctcgcg
      601 ttccgaggtg ctctgctcgg gtcggcactc gggctgtggc cgcagcggtc cgcgacgatc
      661 gtcagctcgg cgctcttcgg gctgtggcac gtctggccca ccctggacac gatgtcggac
      721 aacccagcgg tgagcggtgc gtcgggcagt ctcgccggcc aggtgggcgt cgtgctgggc
      781 gctgtcgtcg tcacgttcgt tgcgggcctt ctcttctgct ggctgcgtct gcggtcgcga
      841 agcctgctgg catcgttcct cgcccacgtt gcgacgaacg gggtcgcgct cgtggtggcg
      901 tggttcgtgg tgcattgacg gggcggaccc gttctcatgc tttggagatg actgctagcc
      961 cttcgagatg actgccttga tctgggccag gtcgtccggt gtgatcccac tcggccgcat
     1021 cgtcgcgttc cagccgtcga cgtactcgcc ggtgtacttg tggccatgtc ccgccggcac
     1081 gccggtcgca aagggaaggt cggccgtgac ctgccagaag gtcacgaacg ggatccacac
     1141 cgtgcgctcg agcacgtcct tgcctggagg ctcactcacc cagtccggct tctggaggac
     1201 caggctcgga ctccaccaga cgatcgggtc tgacgcatgc atcatgtaga gcacgcgcgt
     1261 gccgtcccat ggctggttgt cgggcggtat gtcggcggag gtgtcctctg cgaaccgcac
     1321 ggtgcgaccg gccttgtaga cgggctggat ctccaggctt cccttgtcac ggttgtcgct
     1381 gaactcgcgg aacagcgtgt tgaagttggg tgggccggca aacagggttc ccgcagtgcg
     1441 gttgcgcagg tcgtactcgc cactgaaggc ggtctccgcg ccgaacgacc ccaggctctc
     1501 cccggcgaca tacagcttcg ggcgctggtc ctgcgggagc ttcgaccaac ggtcgtagac
     1561 cgcgtcgaag agggcgcgtc cggcctcgcg agccttcttc tggtcgacga gataggacag
     1621 ccaggagg
//
LOCUS       DASYFY010000221         5145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1330886, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000221 DASYFY010000000
VERSION     DASYFY010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5145
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330886"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..860
                     /locus_tag="VGN19_04315"
     CDS             <1..860
                     /locus_tag="VGN19_04315"
                     /inference="COORDINATES: protein motif:HMM:NF033206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ScyD/ScyE family protein"
                     /protein_id="HEV7195142.1"
                     /translation="GVLTRVVDHIISLASPAGIAAEGMAAVSTWGTHTYAQIGANTAG
                     IPPQAPASNPIVAGARAQLGRTIAITATGWRSLASTGDINFAWTATHKALQPDQFPDS
                     NPNGITTVGTTQYVANAGANLLDGVNSVGGVSPLAYFRVPAGSPTDAVPTCVAQAPDG
                     SLYVGELLGGTFAPGHARVWRIANGHAAVKWDGFTTIQGCGFDDLGNFYATEFQASGL
                     NLAPNASPLGAVVKVTPSGHRTTFGMGSLFFPSGFAYNDGAVYVSNWSIMPAQNQGPT
                     GQVVKIVVH"
     gene            complement(1005..1694)
                     /locus_tag="VGN19_04320"
     CDS             complement(1005..1694)
                     /locus_tag="VGN19_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7195143.1"
                     /translation="MPERPEPLRVLVVEDEPVALEAHTAYVERVPGFMVVATATTSQA
                     ALHALRRIAIDVVLLDMNLPDRHGLEVIRAMRAGGHAADVIAVTSARDLDVVRAAVSL
                     GVVQYLLKPFVFATLRDRLEAYRSYRDQLGGADQLSTQAEVDEVLAGARHSTRTALPK
                     GMSGELLAKVTRSLREAEGLSATELADRVGVSRVTARRYAEHLCEGRLALRTQRYAGA
                     GRPEVEYRWVG"
     gene            complement(1687..3333)
                     /locus_tag="VGN19_04325"
     CDS             complement(1687..3333)
                     /locus_tag="VGN19_04325"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEV7195144.1"
                     /translation="MPVSAPRWVGAPARWSVAAQTFALQVLVALLVVLVGTVAAYAQT
                     QRAGRQEATARATAVAETLASTPLVVSGVQGGAARTELQPFAQQVLHQTHTDFVVVMS
                     PQGIRYTHPDPSQIGKPFLGHIEAARAGGIVVEDYAGTLGPSRRVVVPVRDRGGAVVG
                     LVAVGIRETAVSEQLRGQLPVIVLAGLAAALLSGLGTGLVARRIRRQTHGLGERQLQE
                     MVEYYDAVLHAVTEGLILTDLDGRLLLANDEAVRLLGLPDDAPGRAVATLGLGAPIVE
                     ALTDSEPRQDELHVTSARVLVLNKARAHWEGRALGFVATLRDRTDLEHLTGELDSARG
                     LTEALRSQAHESANRLHAIVSLIELGHPERALAFATEELQLSQLLTDRIVGAVAEPAL
                     TALLLGKAAQASERGIDLRIAPDAVWPSHAAPVRDVVTIVGNLIDNAFDAVASHGGQS
                     ASPASPAGERWVQIASRLDDGYVVLSVADSGPGLPPEAVEAAFRRGYSTKAEGSAGRR
                     GIGLALVAQSVSRLGGSMDVSGPPGARFTVRLPVEERARA"
     gene            3479..4891
                     /locus_tag="VGN19_04330"
     CDS             3479..4891
                     /locus_tag="VGN19_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEV7195145.1"
                     /translation="MTSSADIVVDRPAPRRDRTHYLYLAVIVAMILGILVGFAFPEFA
                     VQLKWLGTGFVNLIKMMITPIIFCTIVLGIGSVRKATQVGKVGGLALGYFLTMSTVAL
                     AIGLVVGNLIHPGAGLHLTKELAATGRKQVGAAHTSTADFILGLIPDTLVSSLTAGSV
                     LQALLVALLVGFALQKMGRTGEPVLAGIKHFERLVFRLMAMIMYAAPIGAFGAMAAVV
                     GATGWKALQSLAIVMIAFYLTCALFVFVVLGTLLKLVTGVNVFALLRYLAREFLLILS
                     TSSSESALPRLIAKMEHAGVSRPVVGITVPTGYSFNLDGTAIYLTMASLFIADAMDKP
                     FSIGQQISLLLFMIIASKGAAGVTGAGLATLAGGLQSHRPDLVDGVGFIVGIDRMMSE
                     ARALTNFAGNSVATVLIGHWVGELDRPRLDAVLAGHLPFDESTLLEDEVTGARRVEPD
                     GGVGGSSGLETSREPALQPR"
BASE COUNT          783 a         1877 c         1713 g          772 t
ORIGIN      
        1 acggtgtcct gaccagagtc gtcgaccaca tcatctcgct cgccagcccg gcggggattg
       61 ccgccgaggg catggcggcg gtgtccacct ggggcaccca cacctacgct cagatcggtg
      121 cgaacacggc cgggatcccc ccgcaggcgc ccgccagcaa cccgatcgtc gcaggcgctc
      181 gagcccagct cggtcgcacg atcgccatca cggcgaccgg ctggcgttcc ctggccagca
      241 cgggcgacat caacttcgcc tggaccgcca cgcacaaggc gctccagcct gaccagttcc
      301 cggactccaa ccccaacggc atcaccacgg tcggcaccac ccagtacgtc gccaatgccg
      361 gcgcgaacct cctcgacggg gtcaacagcg tcggaggggt ctcgccgctg gcgtacttcc
      421 gggtcccggc cggctccccc actgacgcag tcccgacgtg cgtggctcag gcgccggacg
      481 ggtcgctgta cgtcggcgag ctcctcggcg gaacgtttgc ccccggccac gcccgggtct
      541 ggcggatcgc caacggtcac gcggccgtga agtgggacgg gttcaccacg atccagggct
      601 gcggcttcga cgacctgggg aacttctacg ccaccgagtt ccaggccagc ggcctgaacc
      661 tcgcccccaa cgccagcccg ctgggtgcgg tcgtcaaggt gacgccgtct gggcaccgga
      721 ccacgttcgg gatgggttcg ctgttcttcc cctccggctt cgcctacaac gacggagcgg
      781 tgtacgtctc caactggagc atcatgccgg cccagaacca ggggccgact gggcaggtcg
      841 tgaagatcgt cgtgcactga cgcccgcacc aaggccggtc aacgccccgg ccaaatgggc
      901 cggatagggc caaacagcag gggtatgccg cgtgggttgt cctacgcggc acacccttgt
      961 tcggctcagg caacatctcg ggcgccacct ctccgattga gctgtcatcc cacccagcgg
     1021 tactccacct cggggcggcc ggcaccggca taccgctggg tccgcagcgc gaggcggccc
     1081 tcgcagagat gctcggcgta gcgtcgcgcg gtgacccggc tgacacccac gcggtcagcg
     1141 agctcggtgg ccgagagccc ctctgcctcg cgcaaagacc gggtgacctt ggcgagcagc
     1201 tccccgctca tgcctttggg caacgccgta cgagtgctgt ggcgcgcacc agcgagcacc
     1261 tcgtcgacct cggcctgggt actgagctgg tcagcgcccc cgagctggtc gcggtacgag
     1321 cggtaggcct cgaggcggtc acgcagcgtg gcgaagacga agggcttgag caggtactgc
     1381 acgacgccga gagacaccgc ggcacgcacg acgtcgaggt cgcgtgcgga cgtgacggcg
     1441 atgacgtccg ccgcgtggcc tccggcccgc atcgcgcgga tcacctccag cccatggcgg
     1501 tccgggagat tcatgtcgag caggacgacg tcgatggcga tgcgtcgcaa ggcgtgcagg
     1561 gctgcctggc tcgtggtggc ggtggcgacc accatgaagc ccggcacgcg ttcgacgtat
     1621 gccgtgtgag cctcgagcgc gaccggttcg tcctcgacga ccaggacccg cagcggctca
     1681 ggccgctcag gcacgagctc gctcctcgac gggaagccgc accgtgaagc gggcgccggg
     1741 cggcccggag acgtccatgc tcccgcccag tcgggacact gactgggcga cgagggccag
     1801 accgatgcca cgcctgcccg cgctgccctc cgccttggtc gagtagccgc gacggaacgc
     1861 cgcctcgacc gcctcgggcg gtaggccggg gcctgagtcg gcgacgctca acaccacgta
     1921 gccatcgtcg agccgggagg cgatctggac ccagcgctcg cccgctggcg aagcgggtga
     1981 cgcggactgg ccgccgtgcg acgccacggc gtcgaaggcg ttgtcgatga ggttgccgac
     2041 gatggtcacg acgtctcgga ccggcgcggc gtgggacggc cagacggcat ccggcgcgat
     2101 ccgcaggtcg atcccgcgct cgctcgcctg ggccgccttg ccgagcagca gtgctgtcag
     2161 cgccggctcg gccaccgcgc cgacaatgcg gtcggtcagc agctgcgaca gctggagctc
     2221 ttcggtggcg aaggccagcg cgcgctccgg gtggcccagc tcgatgagcg acacgatggc
     2281 gtggagccgg ttggccgact cgtgggcctg ggaacgcagc gcctcagtga ggccacgggc
     2341 ggagtcgagc tcgccggtga ggtgctcgag gtcggtgcgg tcgcgcagcg tggccacgaa
     2401 acccagtgcc cgcccctccc agtgcgcgcg ggccttgttc aacaccagca cccgggcgga
     2461 cgtgacatgc agctcgtcct gacgcggttc cgagtcggtc agggcctcga cgatcggcgc
     2521 ccccagccca agggtggcca cagcccgacc gggggcatcg tcgggcagtc cgagcagtcg
     2581 cacggcttcg tcgttcgcga ggagcagccg gccgtcgagg tccgtgagga tcaggccttc
     2641 cgtgacggcg tgcaggacgg cgtcgtagta ctccaccatc tcctgcagct ggcgctcgcc
     2701 cagcccgtgc gtctgccgcc ggatgcgccg ggccaccagc cccgtgccga gacccgagag
     2761 cagggccgca gcgagccccg cgagcacgat cacgggcagc tggccgcgca gctgttcgct
     2821 caccgcggtc tcccggatgc cgaccgcgac gagtccgacc acagcgccgc cacgatctcg
     2881 caccggcacg accacgcgtc gcgacggccc cagggtgccg gcgtagtcct cgacgacgat
     2941 gccgccggcg cgtgccgcct cgatgtggcc gaggaacggc ttgccgatct gcgaggggtc
     3001 cgggtgggtg tacctgatcc cctgcgggct catcacgacg acgaagtcgg tgtgagtctg
     3061 gtgaagcacc tgctgagcga acggctgcag ctcagtcctc gccgcgccgc cctgcactcc
     3121 gctgaccacc agcggggtgc tggctagcgt ctcggcgacc gcggtcgcgc gcgcggtggc
     3181 ttcctgtcgc ccggctcgct gggtctgcgc gtaggcagcg acagtgccga cgaggacgac
     3241 caacagagcc accagcacct gcagcgcgaa cgtctgtgcg gcgacgctcc accgggcggg
     3301 cgcgccaacc cacctgggcg cgcttaccgg catacgagcc accggtcccg gtcgaactca
     3361 atgaacacaa cggtgaccct agtcacctca gtggcccagt ctcgtggatg ttcagccctc
     3421 ccgggcccag gcccgggacc agttccagac caatcccaga ccaatcccgg agaagaccgt
     3481 gaccagcagc gccgacatcg tcgtcgatcg ccccgccccg aggcgcgacc gcacgcacta
     3541 cctctacctc gccgtcatcg tggcgatgat cctgggcatc ctcgtcggat tcgcctttcc
     3601 cgagttcgct gtgcagctca agtggctcgg caccggcttc gtcaacctca tcaagatgat
     3661 gatcacgccg atcatcttct gcaccatcgt ccttggcatc ggctcggtcc ggaaggccac
     3721 ccaggtgggc aaggtcggcg gcctcgcgct cggctacttc ctcacgatgt cgaccgtcgc
     3781 cctcgccatc ggcctggtcg tcggcaacct catccacccc ggcgctggcc tgcacctgac
     3841 caaggagctc gccgccactg gtcgcaagca ggtaggagcg gcgcacacca gcacggccga
     3901 cttcatcctc ggcctcatcc ccgacaccct cgtctcctcg ctcaccgccg gctcggtcct
     3961 gcaggcgttg ctcgtcgccc tgctcgtcgg cttcgccctg cagaagatgg ggcgcaccgg
     4021 cgagccggtc ctggccggca tcaagcactt cgagcggctc gtcttccggc tgatggcgat
     4081 gatcatgtat gccgcgccga tcggagcgtt cggcgcgatg gcggccgtgg tgggcgccac
     4141 cgggtggaaa gccctgcaga gcctggccat cgtgatgatc gcgttctacc tcacgtgcgc
     4201 gctgttcgtc ttcgtcgtcc tgggcacgct cctcaagctg gtgacgggcg tcaacgtgtt
     4261 cgcgctgctg cgttacctcg cccgcgagtt cctgctcatc ctgtcgacgt cgtcctcgga
     4321 gtcagcactg ccgcggctca tcgccaagat ggagcacgcc ggggtctccc gtccggtggt
     4381 gggcatcacg gtgccgaccg gctactcgtt caacctcgac ggaacggcca tctacctgac
     4441 gatggcgtcg ctgttcatcg ccgacgccat ggacaagccg ttctcgatcg ggcagcagat
     4501 ctcattgctg ctgttcatga tcatcgcgtc caaaggtgcc gccggggtca cgggcgcagg
     4561 gctcgcgacg ctggccggcg gcctgcagtc gcatcgcccc gatctggtcg acggcgtcgg
     4621 cttcatcgtc ggcatcgacc gcatgatgag cgaggcgcgg gcgctgacca acttcgccgg
     4681 caactcggtc gccaccgtcc tgatcggcca ctgggtcggc gagctggacc gcccccgtct
     4741 cgacgccgtg ctggcaggcc acctgccgtt cgacgagtcg acgctcctcg aggacgaagt
     4801 gacgggcgca cggcgggtcg agcccgatgg cggggtcggc ggcagcagcg gactcgagac
     4861 cagccgggag ccagccctgc agccccgctg agccacgcga ccgacccacg gtcaacgtcg
     4921 aatgccttga gcccacgccg ccacgcgggc tcagggcatt cgcctgcgcg ggaggccttc
     4981 cgccatcgaa tgcacgagaa cgatgcgttc cgccctccga caactgcacc aacgacgtct
     5041 tcagctccgc gtacctttga ccgtcgtccg catggctacg cagccactcg gcgacaggcg
     5101 cacctgcgcc tccggccact gctcggacgt gaagaggtgc ccgat
//
LOCUS       DASYFY010000222         6395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1540338, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000222 DASYFY010000000
VERSION     DASYFY010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6395
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1540338"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..969
                     /locus_tag="VGN19_04335"
     CDS             76..969
                     /locus_tag="VGN19_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018185741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEV7195146.1"
                     /translation="MLEPRKLAALLGRQPLGIVLAAPYAVFLAAVFAYPLGLAVWISF
                     HRYFFAAPGAQVDRPFVGFANYVTVLGDPAVRQSFLNVLEFLVINVPLTVVLSLVLAA
                     ALNSVAHIRTFLRVAYYVPYVTASVALVAVWLFLFSSSGMVNNLLGPLAPNPSWLVNS
                     TLAMPVIAIFVTWKQLGFFILLYLAALQNVPKELYESASVDGAGRLRSFMSVTVPGVR
                     PATTLVVILATITGANLFTEPYLLTNGGGPDGASTSPVFLMYQKGIEQGAPDVAAAIG
                     VILVVAVLAISLINRRLLERD"
     gene            1127..1876
                     /locus_tag="VGN19_04340"
     CDS             1127..1876
                     /locus_tag="VGN19_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012804136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEV7195147.1"
                     /translation="MLVGSFKAKSDTTLSGLLPTGLTTHNYAQIDSRVNLLRSLANSG
                     IFTGGVLLGTVVFGILAGYALARLHFRGRGTLFAVMLLVQIVPFQLLIIPIYVMIVRT
                     YGLADSYLGMILPFAINSTAVFLFRQFFLQLPEELFSAARLDGAGELRILWSIALPLV
                     RPALLTAVLLTFIGPWNEFLWPFLVTKQTDMQPLAVTLANYISNVAGRADNPFGAILA
                     GAVVLAAPAVALFMAFQRHFTTSDIGSGVKG"
     gene            1873..3087
                     /locus_tag="VGN19_04345"
     CDS             1873..3087
                     /locus_tag="VGN19_04345"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEV7195148.1"
                     /translation="MTTLGLGIVGAGGFAGFVAGATADLPDVEIRAVADPVLARAEAL
                     AHQHGARVLADWQDLVAVPDVDVVVVATPPSTHAAIATAALEAGRHVFCEKPLATDES
                     DADAMVELVERTGRVLVVDHVLRYNPILRALTRLQPGLLGEVQSFSFDNDASDEDLDD
                     DHWFWDPGASGGIFIEHGVHFFDAATMLVGRPPTTVQATLARRAEQGPVDLVSATVMH
                     GPAVLATHTHSFTHAHRCERQHLRLDYGAAEARVEGWIPVDAVIDAWTDDAGARLVES
                     LPFQVEDTLSVDGFRLGAEARITTQVRRDVASSAAARGRGRSLDVPHHVRIELTLGGP
                     AAKAQVYAESVRAAMSDLVAAVRTGTTPFSSVREGAAAVAVAAAATRAGLDGRMTAVT
                     AHHLCPTEARTA"
     gene            3084..5162
                     /locus_tag="VGN19_04350"
     CDS             3084..5162
                     /locus_tag="VGN19_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013583786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195149.1"
                     /translation="MTTIDTPTGRHGLRKSLAGATAALAVVLATASAAPAQAHTAGAP
                     GARSGTTAPLTNLAHLDWLGAHVTPPDQAGHTTYELAQQPAVGTLWTYAEPDGSGGYR
                     HVGGGTYDPATDTYGQGAFNADDMSRAAVVYLRHWRATGSPASRTHAYDLLRGLTYLQ
                     TADGPNAGNVVLWMQPDGTLDPSAKPKELPDPSDSDASYWLARTIWALGEGYAAFRET
                     DPAFASFLQGRLDLAVAALDRESLSRYGQYLTIDGQRTPAWLVADGADASAEAVLGLA
                     ADVQANGSPTAKRALGELSEGIADLSAGNAQTWPYGAVRPWARSLSVWHAWASQMPAG
                     LARASTVLGDAHLADVAARDSFTFDPWLLTSGGPDNGRQPTRTDASQIAYGVDARLES
                     LIATGQGARQQASHRLAGIVGAWFFGANPAGTPMYDPATGVTFDGIGADGTVNHNSGA
                     ESTIHGLLAMLTLDAHPDVAALARTATITQRIGTRTVELEHGTLTGGARPVVPPSVWT
                     GEAQYSGSGYVSAPDGGRDSLTLTADRPSLVLPVVDLQPGSSAVTRYAVGDRTLGQVR
                     SGAIGAQGDSPAPGALLPVTLPTTLPAGTTTLSSTTSASNGDEARLDAVMVEPLVSQL
                     ALSGDGHQTALLSSRSPVVRQAHVALPGAGTAYVETYDGTGALVRSWATRAQTLEVAV
                     PAGGFAYLRR"
     gene            5262..6251
                     /locus_tag="VGN19_04355"
     CDS             5262..6251
                     /locus_tag="VGN19_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020017986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 130 protein"
                     /protein_id="HEV7195150.1"
                     /translation="MTQHAFPHAEFPLGPFKPYEGNPIMRPQGDTWESASVYNPAAVV
                     KDGKVVLLYRAHADDIVSHVGLATSEDGIHFERHPEPVLSPTESYEEFGCEDPRVTEI
                     DGTYYLTYTGWDHKSAQLCLATSTDLFTWTKHGPLFPDFNTFLPVGNGSPAPWSKAGA
                     ILSVPIDGRYLMYFGEGSIYYAWSDDLIHWTPCSNDEPIMVPTLPGTFGSFLVEVGPQ
                     PIITNNGLILLLHNAAVKNDDGTVRYTCGQLLFSPDDPTTILAQMNRPWLEPQTYEDM
                     HGLVSNVTFVEGLVFFRDTWFAYYGQSDSTLGVATYKVGDTYATHAVDGTPAA"
BASE COUNT          923 a         2409 c         2076 g          987 t
ORIGIN      
        1 cggcaagacg ccggtggaca gcgcgctgtc gcaggccgcc gacaagatca accagctggc
       61 tagccagccg tgaccgtgct ggaaccccgg aagctggcgg ccctcctggg ccgccagccc
      121 ctgggaatcg tcctcgccgc cccgtatgcc gtgttcctcg ccgcggtctt cgcgtacccc
      181 ctgggtctgg cggtgtggat cagcttccac cggtacttct tcgcagcccc gggcgctcag
      241 gtcgaccgcc cgttcgtcgg gttcgcgaac tacgtgacag tgttgggcga cccggccgtg
      301 cggcagtcgt tcctcaacgt gctcgagttc ctggtcatca acgtgccgct gaccgtggtg
      361 ctgtcgctgg tgctcgccgc cgccctgaac tctgtggcgc acatccgcac gttcctgcgc
      421 gtcgcgtact acgtccccta cgtgacggcc agcgtggccc tcgtcgcggt ctggctgttc
      481 ctgttcagca gcagcggcat ggtcaacaac ctgttggggc cgctcgcgcc caacccctcc
      541 tggctggtga acagcactct ggccatgccg gtcatcgcga tcttcgtcac ctggaagcag
      601 ctcggtttct tcatcctgct ctacctggcc gccctgcaga acgtcccgaa ggagctgtac
      661 gagtcggcct ccgtcgacgg cgccgggcgg ttgcgttcct tcatgagcgt caccgtgccc
      721 ggtgtccgtc ccgcgaccac gctcgtggtc atcctggcca ccatcaccgg tgccaacctg
      781 ttcaccgagc cctacctgct gaccaacggc gggggtcccg acggggcgtc aacctccccg
      841 gtgttcctca tgtaccagaa ggggatcgag cagggcgccc cggacgtggc cgctgcgatc
      901 ggggtcatct tggtggtcgc cgtcctggcc atctccctga tcaaccgacg cctcttggag
      961 cgtgactgac atggctgtga acgcgacgaa cgcgaccagc gcgacgaact caccgacgcc
     1021 gacagtgccg ccggcgccgt cggccggccg ggccaaggcc gtgcgctggc tcagcttcgg
     1081 ggcgttgctc ctgggggcgc tggtgttcct gttccccttc tactacatgc tcgtcggctc
     1141 cttcaaagcc aagtccgaca ccactctgag cggcctgctg ccgaccggcc tgacgacgca
     1201 caactacgcc cagatcgaca gccgggtgaa cctgctgcgc tcgctggcca actcggggat
     1261 cttcaccggc ggcgtcctgc tggggacggt cgtgttcggc atcctggccg gctatgcctt
     1321 ggcacgactg cactttcggg gtcgaggcac gttgttcgcg gtcatgttgc tcgtccagat
     1381 cgtgcccttc cagctactga tcatcccgat ctacgtgatg atcgtgcgga cctacgggct
     1441 ggccgactcc tacctaggca tgatcctgcc gttcgcgatc aactccacgg cggtgttcct
     1501 gttccgccag ttcttcctcc agctgcccga ggagctgttc tcggcggcgc gcctggacgg
     1561 ggcgggcgag ctgcgcatcc tctggtcgat cgccctcccg ctggtcaggc cggcgctgct
     1621 cacggccgtg ctcctgacct tcatcggccc ctggaacgag ttcctctggc ccttcctcgt
     1681 caccaagcag accgacatgc agcccctggc ggtcaccctc gccaactaca tcagcaacgt
     1741 ggccggccgg gccgacaacc ccttcggcgc catcctcgcc ggcgctgtcg tgctcgcggc
     1801 accggccgtg gccctgttca tggccttcca gcgccacttc accacctccg acatcggatc
     1861 aggagtcaag ggatgaccac tctcggactg ggcatcgtgg gcgccggcgg gttcgccggg
     1921 ttcgtcgcgg gcgccacagc agacctgccc gacgtcgaga tccgggcggt cgccgacccg
     1981 gtcctcgccc gagcggaggc cctggcccac cagcacggtg cgcgcgtcct ggcggactgg
     2041 caggacctgg ttgcggtccc cgacgtggac gtggtggtcg tcgcgacgcc gccgtccacc
     2101 cacgcggcga tcgccaccgc cgcactggag gcgggccggc acgtgttctg cgagaagccg
     2161 ctcgcgaccg acgagtccga cgccgacgcg atggtggagc tcgtcgagcg caccggtcgc
     2221 gtcctggtcg tcgaccacgt gctgcgctac aaccccatcc tgcgcgcact gacgcggctc
     2281 cagcccggac tgctgggcga ggtgcagagc ttcagcttcg acaacgacgc cagcgatgag
     2341 gacctcgacg acgaccattg gttctgggac ccgggcgcca gcgggggcat cttcatcgag
     2401 cacggcgtgc acttcttcga cgccgcgacc atgctggtgg ggcgtccgcc gacgacggtg
     2461 caagccaccc ttgcgcgccg agccgagcag gggccggtgg acctggtcag tgcgaccgtc
     2521 atgcacggtc cggcggtgct ggccacgcac acacacagct tcacccacgc ccaccggtgc
     2581 gagcgacagc acctgcgcct ggactacggc gcggccgaag cgcgcgtcga ggggtggatc
     2641 cccgtcgacg cggtgatcga cgcatggacg gacgacgccg gggcccggct ggtcgagagc
     2701 ctgccgttcc aggtggagga caccctctcc gtggacgggt tccgtctcgg cgccgaggcg
     2761 aggatcacga cgcaggtgcg acgcgacgtg gcatccagcg cagccgctcg cggccgggga
     2821 cggtcgttgg acgtgccgca ccacgtgcgt atcgagctga ccttgggcgg cccggccgcc
     2881 aaggcgcagg tgtatgccga gagcgtgcgg gccgcgatga gcgacctggt tgcagccgtg
     2941 cgcaccggca ccacaccgtt cagctccgtg cgcgagggcg cggcagccgt agccgtggcg
     3001 gcagcggcta ccagagccgg gctcgacggt cgcatgaccg ccgtcacggc ccatcatctg
     3061 tgcccgacag aagcgaggac cgcatgacga ccatcgacac ccccacgggc cggcacggcc
     3121 tgcggaagtc tctggcggga gccaccgcag ccctcgccgt cgttctcgcg accgcgtcgg
     3181 cggcgccggc ccaggcccat accgcgggcg ccccaggcgc gaggtcgggt acgaccgcac
     3241 cactgaccaa cctcgcccat ctcgactggc tcggcgccca cgtcacgccg ccggaccagg
     3301 cgggccacac gacctacgag ctcgcccagc agcctgccgt cggcacgctc tggacctacg
     3361 ccgagcccga cggcagcggt ggctaccgcc atgtcggcgg ggggacctat gaccccgcga
     3421 ccgacaccta cgggcagggc gccttcaacg ccgacgacat gtcgcgtgcc gcagtcgtct
     3481 acctgcgcca ctggcgcgcc accggctcgc cggcaagccg gacccatgcc tacgacctgc
     3541 tgcgcggcct gacctacctg cagaccgcgg acggcccgaa cgccggcaac gtcgtgctgt
     3601 ggatgcagcc cgacggcacc ctcgacccga gcgccaagcc caaggagctg ccggacccct
     3661 ccgacagtga cgcgtcctac tggttggcgc ggaccatctg ggcactgggg gagggctacg
     3721 ccgccttccg cgagaccgat cctgcgttcg cgtccttcct gcagggccgg ctcgacctcg
     3781 ccgtcgccgc cctcgaccgc gagagcctga gtcgctacgg ccagtacctc accatcgacg
     3841 gccagcggac gcccgcatgg ctggtcgccg acggcgccga tgccagtgca gaggcggtgc
     3901 tcggcctggc tgccgacgtg caggcgaacg ggtcgccgac cgcgaagcgg gccctggggg
     3961 agctgagcga ggggattgcc gacctatcgg ccggcaacgc ccagacctgg ccgtatggtg
     4021 ccgtgcgccc gtgggcgcgg tccctctcgg tctggcatgc ctgggcctcc cagatgccgg
     4081 ccggtctcgc ccgggcgtcg accgtcctgg gcgacgccca cctggccgat gtcgccgccc
     4141 gggactcgtt cacgttcgac ccctggctcc tgacctcagg tggccccgac aacggccggc
     4201 agcccaccag gacggacgcg tcgcagatcg cctacggcgt cgatgcccgg ctcgagtcgc
     4261 tcatcgccac cggacagggc gcgcgccagc aggcgtccca ccgcctggcc ggcatcgtgg
     4321 gcgcctggtt cttcggcgcc aaccctgcag gcaccccgat gtacgacccg gcaacgggcg
     4381 tgaccttcga cggcatcggc gctgacggca ccgtgaacca caactccggc gcggagtcca
     4441 ccatccacgg cctgttggcg atgctcaccc tcgacgcgca ccctgacgtg gcggcgctgg
     4501 cgcggaccgc caccatcacc cagcgcatcg gaacccggac ggtcgagctg gagcacggga
     4561 cgctgaccgg tggcgcgcgt ccggtcgtgc caccgtcggt gtggaccggg gaggcgcagt
     4621 actccggctc cggttacgtg tcggctcccg acggcggcag ggactcgctc acgctgaccg
     4681 cggaccggcc ctcgctggtc cttccggtcg tcgacctgca gccgggcagc tctgcggtga
     4741 cccgttacgc cgtgggcgac cgcacgctcg gccaggtgcg ctcgggcgcc atcggcgccc
     4801 agggtgactc cccggcccca ggcgccctgc ttcccgtaac cctgcccacg acgctgcccg
     4861 cgggcacgac gacgctgtcc tccaccacca gcgcctcgaa cggcgacgag gccaggctcg
     4921 acgccgtgat ggtggagccg ctcgtgtccc agctggctct gagcggagac ggccaccaga
     4981 ccgccctgct gtccagcagg tccccggtgg tccggcaggc gcacgtggcg ctccccggcg
     5041 ccggcacggc atacgtcgag acctatgacg gcaccggcgc gctcgtgcgc tcgtgggcca
     5101 cccgggccca gaccctggag gtcgccgtcc cggcgggagg cttcgcgtac ctgcggcgct
     5161 gagcgcaccc cgaaccgttc cacgagaacc cttgtccccc cgaccccttg acgccccatc
     5221 agatccatcg acccacaccg acccgaaccg aatgaggagc catgacccag cacgccttcc
     5281 cccacgccga gttccccctg ggcccgttca agccctatga gggcaacccg atcatgcgcc
     5341 cgcagggcga cacctgggag tccgcgagcg tctacaaccc ggctgccgtc gtcaaggacg
     5401 gcaaggtggt cctgctctac cgggcccacg ccgacgacat cgtctctcat gtcgggctgg
     5461 cgacgagcga ggacggcatc cacttcgaac gtcacccgga gccggtcctg tcgccgaccg
     5521 agtcgtacga ggagttcggg tgcgaggacc cgcgagtgac cgagatcgac gggacctact
     5581 acctcaccta cacggggtgg gaccacaagt ccgcccagct gtgcctggcg acatcgaccg
     5641 acctcttcac ctggaccaag cacggtccgc tgttccccga cttcaacacg ttcctgccgg
     5701 tcggcaacgg gtcgcccgcc ccgtggagca aggcgggagc gatcctgtcc gtgcccatcg
     5761 acggccggta cctcatgtac ttcggcgagg gctcgatcta ctacgcgtgg tcggacgacc
     5821 tcatccactg gacgccgtgc tccaacgacg agcccatcat ggtgcccacc ctgcccggca
     5881 ccttcgggtc gttcctggtc gaggtgggcc cgcagcccat catcaccaac aacggcctga
     5941 tcctgttgct gcacaatgca gccgtgaaga acgacgacgg cacggtccgc tacacctgtg
     6001 gccagctcct gttctcgccc gacgacccga cgacgatcct cgcgcagatg aaccgtccgt
     6061 ggttggagcc ccagacctac gaggacatgc acggcctggt ctccaacgtc acattcgtcg
     6121 aggggctggt cttcttccgc gacacctggt tcgcgtacta cgggcagagc gactcgaccc
     6181 tcggcgtggc cacctacaag gtcggcgaca cgtacgccac ccatgccgtc gacgggaccc
     6241 ccgcggcgtg agctcctggc tgggcagccc accccaccac cgctggctgg agagcgagct
     6301 cgaccgcctg ctcgccttca gccgcgggtc ggtgcatccg tccggtggtt tcgcgtggct
     6361 cgacgcgcag ggccgtcctc ggctcgaccg tccgg
//
LOCUS       DASYFY010000223         3421 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1119579, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000223 DASYFY010000000
VERSION     DASYFY010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1119579"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VGN19_04360"
     CDS             <1..258
                     /locus_tag="VGN19_04360"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771850.1"
                     /note="catalyzes the formation of
                     (R)-2,3-dihydroxy-3-methylbutanoate from
                     (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and
                     isoleucine biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEV7195151.1"
                     /translation="GDYVSGPRVIDPRVKENMQAVLADIKNGAFAKRFIDDQDAGGPE
                     FKALREKGAQHPIEGTGKELRKLMSWIKETDSDYVEGSAAR"
     gene            complement(354..1136)
                     /locus_tag="VGN19_04365"
     CDS             complement(354..1136)
                     /locus_tag="VGN19_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEV7195152.1"
                     /translation="MRVVVTGAAGDLGWRVGRELTRRGHTVVPASRRTGVDLATGDGL
                     DAVLSGADAVVHCATNPRRARAVDVEGTRRITTALARQDDPAHLVAISIVGCDLVPFG
                     YYRAKADAERLIETSAIPATVVRATQFHALAAFLARVTQVGRMGITLRDLTLRPVDIG
                     WVASRLVDHAVGPRPTGPERAVDLVGPDILSIPELAAAVAAHDDRPTTRFVRVPPVGR
                     AMRGLSAGALISAGEVERGGRSFSEWLATQPHPLPRGMHDRS"
     gene            1329..2915
                     /gene="serA"
                     /locus_tag="VGN19_04370"
     CDS             1329..2915
                     /gene="serA"
                     /locus_tag="VGN19_04370"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018768338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEV7195153.1"
                     /translation="MSKPIVLIAEELSPATIDALGPDFEIRQIDGANRDELLPALADV
                     DAVLIRSATKMNAEAISAAKKLKVIARAGVGLDNVDVDAATRAGVMVVNAPTSNITSA
                     AELAVGLLLATARNIAPANQALKGGAWKRSKYGGVELLDKKVGIVGFGRIGQLVAERL
                     KGFGMEILAYDPYVSAQRAGQLGAQLVTLDELLEQSDFITVHLPKSPETLGLLGKEAL
                     AKVKPTVRIINAARGGIVDEEALAEALREGRVAGAGIDVFATEPTTESPLFEHESVVV
                     TPHLGASTDEAQEKAGVAVAKSVRLALGGDLVPDAVNVSGGAVPEEVRPGIALVEKLG
                     RIFTALAGSVPVQLDVDVKGEITAFDVSIWKLAALKGLFADVTEVPVTYVNAPLLAEQ
                     RGCEVRLLTDPTTQDFRNVTTLRGTLADGSTVSVSGTLTGPRLVEKVVGVNGFDIEVP
                     LSEHLAFFTYVDRPGVIGTVGRLLGDAQVNIDSMQVARNERGGQALVALTVDSAIPAD
                     VLAAIASDVGAEVHLVDLAG"
BASE COUNT          556 a         1157 c         1201 g          507 t
ORIGIN      
        1 ggcgactacg tctccggccc acgggtgatc gacccgcggg tgaaggagaa catgcaggcg
       61 gtcttggcgg acatcaagaa cggggcgttc gccaagcggt tcatcgatga ccaggacgcg
      121 ggcggacccg agttcaaggc cctgcgcgag aagggcgctc agcatccgat cgagggcacc
      181 ggcaaggagc tccgcaagct gatgagctgg atcaaggaga cggacagcga ctatgtcgag
      241 ggttcagccg cgcgttgaca ggcgcctgag ctcgactagt caagacggca gctgcgtcgc
      301 acctacggat ccaggtccca ggtggcgacg cagctgccgt tctgcgtcga tggtcaggag
      361 cggtcgtgca tgccccgcgg tagcgggtgc ggctgggtgg ccagccactc gctgaaggac
      421 ctcccgcccc gctcgacctc gccggccgag atgagtgcgc cagcggacag gccccgcatc
      481 gcccgcccga ccggcggaac cctgacgaag cgcgttgtgg ggcggtcatc atgagcggcc
      541 acggcggcag cgagctcggg gatgctgagg atgtccggcc cgacaaggtc cacggcacgc
      601 tcaggcccgg tggggcgtgg cccgaccgcg tggtcgacca gccgggacgc aacccagccg
      661 atgtcgacag ggcgaagggt gaggtcgcgc agcgtgatcc ccatccgtcc tacctgcgtc
      721 accctggcca ggaacgcggc gagcgcatgg aactgggtgg cccgcacgac ggtggccggg
      781 atggcgctgg tctcgatgag ccgctcggcg tcggccttgg cccggtagta cccgaacggg
      841 accaggtcgc atccgacgat cgagatcgcc accaggtggg ccgggtcgtc ctgccgggcg
      901 agggctgtgg tgatccggcg ggtgccctcg acatcgacgg ctcgggcccg gcgagggttc
      961 gtggcgcagt gcaccacggc gtcggccccg ctgagcacgg cgtcgagccc gtcaccggtc
     1021 gcgaggtcca cgccggtccg ccggctggct gggaccacgg tgtgcccccg ccgggtgagc
     1081 tcgcggccca ctcgccagcc gaggtcgcct gccgctcctg tcactacgac tcgcatgcgc
     1141 ccatcgtgcc gggtcacgtg ggggtcgccg atgtgtggtt cgccacgcgg catacccgct
     1201 cgtgcgtgga ggcggcccgc cgtgtgtcac atgccgagca ggccatccac atgctgaacg
     1261 gccccgtatg ctggccgcga gcacagcgtg gtgccgaccc tcatccgtga ccaccaaagg
     1321 accgacacgt gagcaagccg atcgtcctca tcgccgagga gctctcgccg gcgaccatcg
     1381 acgccctggg gccagacttc gagatccgtc agatcgacgg agcgaaccgt gacgagctgc
     1441 tgcccgcgct cgcggacgtg gacgccgtgc tcatccggtc tgccacgaag atgaacgccg
     1501 aggccatcag cgccgcgaag aagctcaagg tcatcgcccg ggccggggtc ggtctggaca
     1561 acgtcgacgt cgacgccgcc acccgggccg gcgtcatggt cgtcaacgcc ccgacctcga
     1621 acatcacctc ggcggccgag ctcgcggtgg gcctgctgct cgcgacggcc cgcaacatcg
     1681 cccccgccaa ccaggccctc aagggcggcg cctggaagcg cagcaagtac ggcggcgtgg
     1741 agctgctgga caagaaggtc ggcatcgtcg ggttcggccg gatcggccag ctcgtcgccg
     1801 aacggctcaa gggtttcggc atggagatcc tggcctacga cccctatgtc tcggcccagc
     1861 gtgccggcca gctcggagcc cagctggtca cgttggacga gctgctcgag cagagcgact
     1921 tcatcacggt gcacctgccg aagagccccg agacgctcgg gcttctcggc aaggaggcgt
     1981 tggccaaggt caagccgacc gtgcgcatca tcaacgcagc gcgtgggggg atcgtcgacg
     2041 aggaggccct cgctgaggcc ctgcgcgagg gtcgcgtcgc cggcgccggt atcgacgtgt
     2101 tcgccactga gcccaccacc gagagcccgt tgttcgagca cgagtccgtc gtcgtgaccc
     2161 cccacctggg ggcctccacg gatgaggctc aggagaaggc cggcgtggcg gtggcgaagt
     2221 cggtgcggct cgcgctcggg ggcgacctcg tgccggacgc ggtcaacgtc tcgggtgggg
     2281 cagttcccga ggaggtccgc cccgggatcg cactggtcga gaagctcggt cgcatcttca
     2341 ccgccctggc cggatcggtt ccggttcagc tggacgtcga cgtcaagggc gagatcaccg
     2401 cgttcgatgt ctccatctgg aagctcgcgg cgctcaaggg gctgttcgcc gacgtcaccg
     2461 aggtcccggt gacgtatgtc aacgccccac tgctggccga gcagcgcggc tgcgaggtgc
     2521 gcctgctcac cgaccccacc acccaggact tccgcaacgt gaccaccctg cgcggcaccc
     2581 tggcggacgg gtcgacggtg agcgtgtccg gaaccttgac cggaccgcgc ctggtcgaga
     2641 aggtcgtcgg cgtcaacggg ttcgacatcg aggtcccgct gtcggagcac ctcgccttct
     2701 tcacctacgt ggaccgtccg ggagtcatcg gcaccgtggg ccggctgctc ggggacgccc
     2761 aggtgaacat cgacagcatg caggtggccc gtaacgagcg gggtggccag gccctcgtgg
     2821 cgctcaccgt cgacagcgcg atcccggccg atgtcctggc ggccatcgcg tcggacgtcg
     2881 gcgccgaggt gcacctggtg gacctcgccg gctaacggcg gctcttcctc agctcgaaac
     2941 catcggtatg ccggtgggtc tgttcacgca gacccgccgg catccgcggt tttcagccct
     3001 tctggtgacg aaaaccacgg ccgagggcgt ctcacacagt gggaaacggg tatcaactag
     3061 ttggacgtcc acgtaatctc ataggcatgg cgcggcagtt ggtcattctt atctgccgcg
     3121 gcgagttcag gtagtcagcc cactcgccgc ggagatcccg cgtgcgtggc tggctgggcg
     3181 ccccgacatc cggagcgcgc ccccgagaac tcgacaccat ccaactgtgt tgcgacacag
     3241 gggaattcac aaggactgag gatcatgagc gaagaggcac agaaggcacg tcaggcgctg
     3301 caggagtcga tggacctgcg cgagcagggt cactccgacg actgaacact gcaggcgcga
     3361 ggctgcggcc tcgctgttgc acgacgacac gaccctgggc tcacgctcag ggtcgtgtcg
     3421 t
//
LOCUS       DASYFY010000224         2212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1383141, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000224 DASYFY010000000
VERSION     DASYFY010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1383141"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..118
                     /locus_tag="VGN19_04375"
     CDS             <1..118
                     /locus_tag="VGN19_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histone-like nucleoid-structuring protein Lsr2"
                     /protein_id="HEV7195154.1"
                     /translation="GGKRDLADVRDWARKHGHTVSDRGRISAEIQAAYDKAH"
     gene            186..839
                     /locus_tag="VGN19_04380"
     CDS             186..839
                     /locus_tag="VGN19_04380"
                     /inference="COORDINATES: protein motif:HMM:NF023007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEV7195155.1"
                     /translation="MDVKQVLDNEADLPWSWLGLLQAQLQGEDPTAGWRGLVATGVHT
                     SSGVIVAPAMPAAFVLQWSLEVAAEAGLYAALRLRGIHDPTSSGLTFAVEPAQGYPTR
                     VHFRSLLSPTSTPSPTSRASPGEDGEDGEDGEDGETLVSANQAAYRRAAVRFAESYQP
                     GVNLGRQQRLELVQDVWAAAVARSEGDPPPARGSCCYIYVLPGAHECAGCPRRGRYR"
     gene            complement(864..1733)
                     /gene="ligD"
                     /locus_tag="VGN19_04385"
     CDS             complement(864..1733)
                     /gene="ligD"
                     /locus_tag="VGN19_04385"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEV7195156.1"
                     /translation="MSENAAVLVEGRRLKLTSLDKLMYPSTETTKGEVLSYYAQVAPV
                     LLPHLAGRPVTRVRWPHGTGDQSFFEKNLPSGAPSWLPRVQVDDVTYPMVEDLAQLTF
                     LVNLNSIEFHVPQWQVDEGGHRQAPDRLVIDLDPGAPAGLAECATVALMVRERLGDLG
                     LDLVPVTSGSKGMQLYARLAGDLSSDQIRDLTQQLAQELTKRHPELIVWKMTKSLRPG
                     KIFLDWSQNVAAKTTICPYSLRGRETPRVAAPRSWDEVEAGAQGAPFEQLMFDEVLER
                     LESQGDLAAELLG"
     gene            complement(1750..>2212)
                     /locus_tag="VGN19_04390"
     CDS             complement(1750..>2212)
                     /locus_tag="VGN19_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEV7195157.1"
                     /translation="GVVSKRLSSPYLAGRRSADWLKSPHRATVSVVVGGWRSEKTNDS
                     GRLGAVLVGMPDGAGGWRYAGGVGSGIAGRAAVQLAAALAPLTRADSPFSTDVPRADA
                     VGVTWVEPALVVEARTLEVTRDGRLRQPAYLGIRTDLTPQELLDEAVGEDN"
BASE COUNT          332 a          755 c          785 g          340 t
ORIGIN      
        1 cggcggcaag cgtgacctgg ccgacgtgcg cgactgggct cgcaagcacg gccacaccgt
       61 cagcgaccgt gggcgtatct cggccgagat ccaggccgcc tacgacaagg cccactgagc
      121 agcaccggct cagccgccac tgagcagcca ctgagcgtcg gtcggcgtcc atcggcggag
      181 ctctcgtgga cgtgaagcag gtcctcgaca acgaggcgga cctcccctgg agctggctcg
      241 gccttctgca ggcccagctc cagggggagg acccgacggc cggctggcgc ggcctggtcg
      301 cgaccggggt gcacaccagt tccggtgtga tcgtggcgcc ggccatgccg gccgctttcg
      361 tcctgcagtg gtcattggag gtggccgccg aagccgggct gtatgccgcg ttgcggctgc
      421 gcggtatcca tgacccgacg agctcagggc tgacgttcgc ggtcgaaccc gcccagggat
      481 atccgaccag ggtccatttc agatccctgc tgtcgccaac atcgacgccg tcgcccactt
      541 cgcgagcttc gcccggcgag gacggcgagg acggcgagga cggcgaggac ggcgagacct
      601 tggtgtcggc caaccaggcc gcgtaccggc gagcggcggt caggttcgcc gagtcctatc
      661 aaccaggggt gaacctgggg cgtcagcagc ggctcgagct ggtccaggac gtctgggcgg
      721 cggctgtcgc gcgcagcgaa ggagacccgc cgccggcccg agggtcgtgt tgctacatct
      781 acgtgctacc gggcgcccat gagtgcgctg gctgcccgag gcgcggtcgt taccgctgac
      841 cgcgcgcgcg gactgacgcg gggctagccg agcagctcgg cagccaggtc tccctggctt
      901 tcgagacgct ccagaacctc gtcgaacatg agctgttcga aaggggcccc ctgtgcgccg
      961 gcctcgacct cgtcccagct gcgcggagcg gcgacccggg gagtttccct gccgcgcaac
     1021 gaataggggc agatcgtcgt ctttgcggcg acgttctggc tccagtcgag gaagatcttg
     1081 cccggtcgaa gtgacttggt catcttccag acgatgagct ccgggtgacg cttcgtgagc
     1141 tcctgagcga gctgctgggt caggtcgcgg atctggtcgg agctgagatc tccggccagt
     1201 cgggcataca gctgcatgcc cttgctgccg ctggtcaccg ggaccaggtc gagccccaga
     1261 tcgcccagcc gctctcgcac catcaaagcc accgtggcgc attcggccaa cccggccggg
     1321 gctccagggt cgaggtcgat gaccagccgg tcgggtgcct gacgatgacc cccctcgtcg
     1381 acctgccact ggggaacgtg gaactcgatg gagttgaggt tgaccaggaa cgtgagctgg
     1441 gcgaggtcct cgaccatggg gtaggtgacg tcgtcgacct gcacccgcgg cagccacgac
     1501 ggggcaccgg agggcaggtt cttctcgaag aagctctggt cgcccgtgcc gtgcggccaa
     1561 cgaacccgcg tgaccgggcg acccgccaga tgcggcagga ggaccggagc cacctgggcg
     1621 taatagctga gcacctcgcc cttggtggtc tcggtcgagg gatacatcag cttgtcgagg
     1681 ctggtcagct tgagcctgcg accctcgacc agcacggccg cgttctcgct catctcgcct
     1741 cttcgctcat cagttgtcct cgccgaccgc ttcgtcgagc agctcctggg gggtcaggtc
     1801 ggtgcggatg cccaggtatg ccggttgccg cagccggccg tcacgggtga cctccaacgt
     1861 gcgcgcctcc acgaccagtg cgggttcgac ccaggtcacg ccgacggcgt cggcgcgcgg
     1921 aacgtcggtg ctgaaggggg agtcggcgcg ggtcagcggc gcgagggcgg cggcgagctg
     1981 gaccgcggcc cgtccggcga tcccgctgcc gacgccaccg gcataccgcc atccgccggc
     2041 gccgtcgggc attccgacga ggacggcgcc gagccggccg gagtcgttcg tcttctccga
     2101 tcgccacccc ccgaccacga cggagaccgt cgcccggtgc ggggacttga gccagtccgc
     2161 cgagcgccgt ccggccagat agggggagga gaggcgcttg ctgaccacgc cc
//
LOCUS       DASYFY010000225         4621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1278147, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000225 DASYFY010000000
VERSION     DASYFY010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4621
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1278147"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VGN19_04395"
     CDS             complement(<1..559)
                     /locus_tag="VGN19_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7195158.1"
                     /translation="MASTSLPILGGPPHERADAARNREALLVAATELVQRCGVGSVTM
                     DAVAHQAGVGKGTVFRRFQSRAGLMAALLNDLERSWQGQVISGPPPLGPGASPMDRLL
                     AFGRSRLDYNLTAAQLIEASGQAGRRSLAAQSFTGRHVVYLLGQLEVRGDRAFLARAL
                     LAPLESVIVEQALVSDGFPVERFVQG"
     gene            668..1216
                     /locus_tag="VGN19_04400"
     CDS             668..1216
                     /locus_tag="VGN19_04400"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014923102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HEV7195159.1"
                     /translation="MSETRVVVLVGSLRADSLNRRIAEKLVERSPRGVSIEIAEGLGE
                     VPFYNEDLDAGEVPEAAQRLRELVAGADRVLAVTPEYNGTMPAVLNNAIDWLSRPYGR
                     GAIKGKPFAVVGTTPTPYGGKWAHEHARRSATIAGAVAPDHIAVSQTSIDVDVLGDEE
                     VVGRLVGAVEALVALEPAAAVA"
     gene            complement(1273..3402)
                     /locus_tag="VGN19_04405"
     CDS             complement(1273..3402)
                     /locus_tag="VGN19_04405"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HEV7195160.1"
                     /translation="MASPTSLDVSADLRLKATGVLRQLVGRADAEFRDGQLEAVEALV
                     GLHRRVLVVQRTGWGKSAVYFVSTALRRAEGAGPTVIVSPLLALMRDQIGAAQRAGMR
                     AVTMNSANAEEWGEVSAALSRNEVDVLLVSPERLNNPRFRDEQLPDLARRCGLLVVDE
                     AHCVSDWGHDFRPDYRRIRDLLATLPSDTPVLATTATANARVVTDVVEQLAFGGQQVL
                     TLRGGLARDSLRLGVMRLASPEQRLAWLLAHLDSLPGSGIVYTLTVSAAEDIAAALRE
                     AGHEVRAYTGRTDPGDRERLEASLRDNEVKALIATSALGMGFDKPDLGFVLHLGAPSS
                     PVAYYQQVGRAGRATERADVLLLPGPDDRDIWAYFASASMPQQEQADAVLRALAAAKA
                     PLSTVALESMVDIRRTRLELLLKVLDVDGAVRRVAGGWTSTGEPWTYDAERYARVAAA
                     RVREQELMLTYEKTGECRMAFLQESLDDESAQPCGRCDSCAGTWFPTDLPEAAVTTAR
                     GRLERAGVEVEPRAQWPSGMQRLGVPLKGKISADQAMASGRAVARLSDLGWGQQLRTL
                     LRAPDAPAPAALIQACVPILRDWDWGRRPEAVVSVPSRQRPQLVESVATGLAELGRLR
                     SLGSLDLVESGPVGEPGGNSAFRLAGVWGRLGVGAELRAALAELDGPVLLVDDLASSR
                     WTLTVAAQALREAGATTVLPFVLAVEG"
     gene            3451..3960
                     /locus_tag="VGN19_04410"
     CDS             3451..3960
                     /locus_tag="VGN19_04410"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEV7195161.1"
                     /translation="MPPPQGTELGTDLGTEQRTEQGRRYRVAVPLRWSDMDAYGHVNN
                     VQFLRLLEDARVIGFEEWFGQDRSVLSEGILVARHEIEYLAPLLFRVPPIVVEMWATR
                     IAGAGFDLAYEVRDGRVGQDDTIYARAETTLVLYDFETSKPRRMDDALRSMLGIHSGE
                     PVPFRWRRR"
     gene            3945..4598
                     /locus_tag="VGN19_04415"
     CDS             3945..4598
                     /locus_tag="VGN19_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195162.1"
                     /translation="MASTLMDLHFPDHQGVEDLRTFVSRARAADDDGAVRLQATGTTL
                     AAYVGVLPGGGLLAEGAVLGLRVMPLAEPATVDVTVSLAAVADRLAREVGAVLSLPPM
                     LVSAPWSAVAPPRSGWERVGALPCEVLEEYARQGIEEIARGVPADAGGHAVTALRRQV
                     WGRLTPTTPPVPSGGAFAAYVLGFTEPGTEATVWAHGRWTRLSAPHGHVLVRGAAAP"
BASE COUNT          676 a         1647 c         1652 g          646 t
ORIGIN      
        1 agccctgcac gaaacgctcc acggggaacc cgtcgctgac cagggcctgc tcgacgatga
       61 cgctctccag cggggccagt agcgccctgg ccaggaatgc tcggtcacca cggacctcca
      121 gctgtcccag caggtagacg acatggcgtc ccgtgaagga ctgggccgcg agggaccgcc
      181 ggccggcctg tccggaggct tcgatcagct gggctgcggt gaggttgtag tccaggcggg
      241 agcgaccgaa ggcgagaagc cgatccatcg gcgatgcgcc cggccccagc ggaggcggtc
      301 cgctgatgac ctgaccctgc cagctcctct cgaggtcgtt gagcagcgca gccatcagtc
      361 ccgctcggct ctggaaccgt cggaacaccg tccccttgcc gacgcccgcc tggtgcgcca
      421 ccgcgtccat ggtcaccgac ccgacgccgc accgttgcac gagctcggtg gcggcgacga
      481 gcaacgcctc gcggttgcga gcagcgtccg cccgctcgtg cggaggcccg ccgagtatcg
      541 ggagtgacgt gctggccatg gccgcagtct aagagcgtga cgagaaatct ctccgggaag
      601 gaagaaaagc ggaccgcggt ccgtttaagc cagagtcgtg atcattcccc ccgaaaggct
      661 cgcctccatg tctgaaaccc gcgtcgtcgt cctcgtcggc agcctgcgtg ctgactccct
      721 caaccgtcgc atcgccgaga agctcgtcga gcgcagcccg cgtggcgtct cgatcgagat
      781 cgccgagggc ctgggcgagg tgccgttcta caacgaggac ctcgacgccg gtgaggtgcc
      841 ggaggctgca cagcggcttc gtgagctggt ggccggcgcg gatcgggtgc tggcggtgac
      901 tcccgagtac aacgggacca tgcctgcggt gctcaacaac gccatcgact ggctgtcgcg
      961 cccctacggt cgcggcgcga tcaagggcaa gccgttcgcc gtggtcggca ccactcccac
     1021 gccgtacggt ggcaagtggg cacacgagca cgctcgccgc tcggccacca tcgctggtgc
     1081 cgttgctccc gaccacattg ccgtgtcgca gacctcgatc gatgtcgacg ttctcggtga
     1141 cgaggaggtc gtcgggcggc tcgtcggggc tgtcgaggcg ttggtcgcgc tcgagcccgc
     1201 ggcagcggtg gcctgacgct gcgcgccttc cccgcggtca gcggctgagc ggcacaggca
     1261 ccgacggccc gctcagccct cgacggccag cacgaacggc aggaccgtcg tcgccccggc
     1321 ctctcgcaga gcctgggcgg cgacggtcag cgtccagcga gagctggcca ggtcgtcgac
     1381 cagcagcacc gggccgtcca gctcggccag cgccgcgcgc agctcagctc cgacgcccag
     1441 ccgaccccag accccggcga gccggaaggc gctgttgccg ccgggctcac cgacgggccc
     1501 cgactcgacc aggtcgaggg agcccagcga gcgcagccgc ccgagctcgg ccaggccggt
     1561 ggccaccgac tcgacgagct gaggccgctg acgagatggc acgctgacga ccgcctccgg
     1621 tcggcggccc cagtcccagt cgcgcaggat cggcacgcac gcctggatca gggcggctgg
     1681 cgccggggca tccggcgctc gcagcagggt gcgaagctgc tgcccccagc cgagatcgct
     1741 gagccgggcc accgcacgcc cgctcgccat cgcctggtcg gccgagatct tgcccttgag
     1801 gggcactccc agacgctgca tgcccgaagg ccactgggcc cggggttcca cctcgacccc
     1861 ggcgcgctcc aaccgcccgc gggcggtcgt cacggcggcc tctggcaggt cggtcgggaa
     1921 ccaggtgccc gcacaggagt cacagcggcc gcagggctgg gcgctctcgt cgtccaggga
     1981 ctcctggagg aacgccatcc tgcactcgcc ggtcttctcg taggtgagca tcagctcctg
     2041 ctcgcggacc cgggcggcag ccactcgggc atagcgctcg gcgtcgtagg tccacggctc
     2101 gccggtggag gtccacccac cggcgacccg gcgcaccgct ccgtcgacat cgagcacctt
     2161 caggagcagc tccaggcgag tgcggcggat gtcgaccatg gactccagcg cgaccgtcga
     2221 cagcggcgcc ttcgccgcgg caagggcgcg cagaactgcg tcggcctgct cctgctgcgg
     2281 catcgacgcc gatgcgaagt acgcccagat gtcacggtcg tcgggacccg gcaggagcag
     2341 gacgtccgcc cgttcggtgg ctcgccccgc gcggccgacc tgctggtagt aggcgacggg
     2401 cgatgacggc gcccccaggt gcaggacgaa acccaggtcc ggcttgtcga agcccatccc
     2461 caaggctgac gtggcgatga gggccttcac ctcgttgtcg cgcaggctgg cctcgaggcg
     2521 ctcccggtcg ccggggtctg tgcggccggt gtaggcccgg acctcatgtc ccgcctcgcg
     2581 cagggcggcg gcgatgtcct ccgccgcgct caccgtgagg gtgtagacga tgccgctgcc
     2641 aggcagggag tcgaggtggg ccaacagcca cgcgagccgt tgctcgggtg aggccaggcg
     2701 catcactccc agccggagcg agtcacgagc caacccaccg cgcagggtga gcacctgttg
     2761 ccccccgaag gccagctgct cgacgacgtc ggtgaccact cgggcgttgg cggtggcggt
     2821 cgtcgccagg accggggtgt cgctcggcag ggtcgccagc aggtcgcgga tgcgccggta
     2881 gtcgggccgg aagtcgtgtc cccagtccga gacgcagtgc gcctcgtcca cgaccagcag
     2941 cccgcaacgg cgggcgaggt cggggagctg ctcgtcgcga aaccgggggt tgttcagccg
     3001 ctcgggactg accagcagca cgtcgacctc gttgcgggac aaggcagccg agacctcgcc
     3061 ccactcctct gcgttggcgg agttcatggt gaccgcgcgc atccccgcgc gctgggcggc
     3121 gccgatctgg tcgcgcatga gggccagcag cggggacacg atcacggtcg gcccggcgcc
     3181 ctcggcgcgc cgcagagccg tgctgacgaa gtagaccgcg gacttgcccc accccgtgcg
     3241 ttgcacgacc aggacccgcc gatgcaggcc aaccagagcc tcgaccgcct cgagctggcc
     3301 gtcgcggaac tcggcatcgg cgcgaccgac cagctggcgt agcacgccgg tcgctttcag
     3361 gcgaaggtcg gcggacacgt cgagcgaggt gggggatgcc atgccgacca ccgtatgccg
     3421 ccgggccgac acccctgcga ggatgtcccc atgccaccac cgcaaggcac tgagctaggc
     3481 actgacctag gcactgagca acgcactgag caaggccggc gctaccgggt ggccgttccg
     3541 ctgcggtgga gcgacatgga cgcctatggc catgtcaaca acgtgcagtt cctgcggctc
     3601 ctcgaagatg ctcgcgtcat cgggttcgag gagtggttcg gccaggaccg atcggtcctc
     3661 tccgagggga tcctcgtggc acgacacgag atcgagtacc tcgcaccgct gctgttccgg
     3721 gtccctccga tcgtcgtgga gatgtgggcc acccggatcg ccggagccgg tttcgacctg
     3781 gcctacgagg ttcgggacgg ccgggtcggg caggacgaca ccatctacgc gcgtgccgag
     3841 acgaccctgg tgctctatga cttcgagacc agcaagccgc gtcggatgga cgacgcgctg
     3901 cggtccatgc tcgggatcca cagcggcgag ccggtgccgt tccggtggcg tcgacgctga
     3961 tggaccttca tttcccagac caccagggcg tcgaggacct gcgcaccttc gtgagccggg
     4021 cccgggccgc tgacgacgat ggcgcggtgc gactgcaggc gaccggcacc actctggctg
     4081 cctacgtcgg agtgcttccc ggcggcggcc tgctcgccga aggtgccgtc ctggggcttc
     4141 gcgtcatgcc gctggccgag cccgcgacgg tcgacgtgac cgtgtcgctg gctgccgtcg
     4201 ctgaccggct ggcgcgcgag gtcggcgcgg tgctgagcct gcctcccatg ctggtgtcgg
     4261 cgccctggtc ggcggtggcg cccccgcggt cggggtggga acgagtcggt gcgctgccgt
     4321 gtgaggtgct cgaggagtac gcccgccagg ggatcgagga gatcgctcgc ggggtcccgg
     4381 cggacgcggg aggccacgcg gtcaccgccc tgcgccggca ggtctggggg cgcctgacgc
     4441 cgacaacgcc gccggtgccc tcgggcggcg ccttcgcggc atacgtgctg gggttcaccg
     4501 agccaggcac cgaggcgacc gtgtgggcgc acggccgatg gacgcgcctg tcggcgccac
     4561 atggccatgt gctcgtacgc ggcgccgcgg cgccctgacc agcaggcgcg cgaacggccc
     4621 g
//
LOCUS       DASYFY010000226         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_909869, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000226 DASYFY010000000
VERSION     DASYFY010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909869"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VGN19_04420"
     CDS             <1..492
                     /locus_tag="VGN19_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEV7195163.1"
                     /translation="LVSWSALARATDRSVTALVLRRYDFGRRRSDVPFAVVSSPWHLV
                     VGTIATVVGLLLPVAVALAGVFATALLLAGTQGTELGPGAPITLAVGGVLGLLMLWWG
                     PGGASLRRGSRSIVRRLVPVGLASQIIGGLLVVLGLVAALLALRHGASLTWKPFSGSP
                     FGG"
     regulatory      789..1003
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00379"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-AMP (ydaO/yuaA leader) riboswitch senses
                     the signaling molecule cyclic di-AMP; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="cyclic di-AMP"
                     /db_xref="RFAM:RF00379"
     gene            1010..>1530
                     /locus_tag="VGN19_04425"
     CDS             1010..>1530
                     /locus_tag="VGN19_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEV7195164.1"
                     /translation="MQYLSKHAAAKKISVKQRLAGVGIAGAATLIGGLATAGSAKASS
                     VWDAVAACESSGNWAINTGNGFYGGLQFTPSTWSGFGGTAYAPRADLATRDQQIAIAQ
                     RVLASQGPGAWPVCSVRAGLSRASGGATSSQITVSRSTVRAPLTTKRVTTSTSTVRKS
                     VIKRKTYAVAPASR"
BASE COUNT          211 a          551 c          520 g          248 t
ORIGIN      
        1 ctcgtgagct ggtccgcgct cgcccgcgcc accgaccgct ccgtcacggc cctggtgctg
       61 cggcgctacg acttcgggcg ccggcgcagt gacgtgccgt tcgccgtcgt ctcgagtccg
      121 tggcacctcg tcgtgggcac catcgcgacc gtggtggggc tgctgctgcc cgtcgccgtg
      181 gcgctggccg gggtgttcgc caccgccctg ctcctcgccg gcacccaggg caccgagctc
      241 ggccccggcg cgccgatcac cctcgccgtc ggcggcgtcc tcgggctgct catgctgtgg
      301 tgggggccgg gtggtgcctc gctccggcgt gggtcgcgct cgatcgtgcg gcgcctcgtg
      361 cccgtcggcc tcgcgtccca gatcatcgga gggctcctgg tcgtcctggg cctcgtcgct
      421 gcgctcctgg cgctgcgaca cggggcgagc ctcacgtgga aacccttctc cggcagtccg
      481 ttcggcggct gacggctgga gttctgcgac cgtgccgcgg ttcggcggcg cctggggtcc
      541 tggccgtcga catctgtgtc gcccagtggg cccgtagcgc acccgtctgg ccaacggctc
      601 cgaaaaaaga tcacgaaagt gtctcggctt gggttgtgcg acgtgacaac gtcacgtacc
      661 gtcagtgctc ggcggaaccc ggcctctggc cggaacggga actgcacacc tggttcccgg
      721 ctcgcttcgt cgcgtccggc tccacacgta cgctcccaca acttcacatg gacacccatc
      781 aaatccgttc cctgagcgcg ccgagcctcg ccagccaggg atgtagccca cacccgtggg
      841 ccgggcgagg acgggggacc cagtgtggcc agtgagtgca tgtgtgtcga agcacgtgtc
      901 aatgaggacg agaactggcc ttggggtgaa gtcgcttctg cgacagggca cctgacgccc
      961 caacccgaca gctaaccccg caggcgcgcg tcaggaagga atcaccacca tgcagtacct
     1021 gtccaagcat gctgctgcca agaagatctc ggtcaagcag cgcctcgcgg gagtcggcat
     1081 cgctggcgcg gccaccctca tcggcggtct ggccacggcc ggatcggcca aggcatcctc
     1141 ggtctgggac gccgtcgctg cgtgtgagtc cagcggcaac tgggccatca acacgggcaa
     1201 cggcttctac ggaggcctcc agttcacgcc gagcacgtgg agcggcttcg gcggcacggc
     1261 ctacgccccg cgcgccgacc tcgccacgag ggaccagcag atcgcgatcg cccagcgcgt
     1321 tctcgcctca cagggccccg gcgcctggcc ggtgtgctcg gtccgcgctg gtctgtcgcg
     1381 tgccagcggc ggcgcgacgt cgagccagat caccgtctcg cgttcgacgg tgcgcgcacc
     1441 gctgacgacg aagagggtga cgacctcgac ctcgaccgtc aggaagtcgg tcatcaagag
     1501 gaagacgtat gccgtcgcgc cggcctcgcg
//
LOCUS       DASYFY010000227         8449 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1488055, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000227 DASYFY010000000
VERSION     DASYFY010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8449
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1488055"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VGN19_04430"
     CDS             <1..424
                     /locus_tag="VGN19_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195165.1"
                     /translation="TMSAAIVLIPLVAMASAALIAILAEPGAGPAHRILALTPLRYTG
                     RVSYGMYLWHPFVIAVVVAWKLPVPVLASTVLAMAVATASWLLLERPILRPSGSRRPP
                     RPEHHAFGVGTDDQWPVRSDRSETWSETAGSNPSPSAR"
     gene            complement(346..1527)
                     /locus_tag="VGN19_04435"
     CDS             complement(346..1527)
                     /locus_tag="VGN19_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEV7195166.1"
                     /translation="MAPYLDESRIDSEEAIAALDSRQTLRGLATAGAQVREAIELSGQ
                     GGIERVSGGERPRSVLVASLGGSAVVCDVLELLAEPGSPVPVSVRRNVPLPGWVGPLD
                     LVIAVSLSGRAAGPLALAAEAARRGAALLTVGAPQSPLADVAARARGVHIDIGRGRVT
                     SRTALWSLLAPVLLAAGHLGLVDVREQVLLDTADRLDEVAEAARPSSESFVNPAKVLA
                     TDLAEGVPVVLGDGALSGVAARRTASMLARTARVPATWGELPDDAAQVVACFDGPYTA
                     AYGEAAAARRTGDLFADPYLDGPVSPRLSLLMLRDAEPDPRTPESAQAATLAEAVADA
                     AREAGVRVSQVQAQPGHPLTRLAGQIATTDFAATYLALGLGLDPAVSLHVSDLSERTG
                     H"
     gene            complement(1538..1735)
                     /locus_tag="VGN19_04440"
     CDS             complement(1538..1735)
                     /locus_tag="VGN19_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEV7195167.1"
                     /translation="MPDQKAQIEPWLREILRCPACRSELSDAEGPTGVELHCTNVECG
                     LQYRIDDGVPVLLVDEARKPA"
     gene            complement(1735..3177)
                     /locus_tag="VGN19_04445"
     CDS             complement(1735..3177)
                     /locus_tag="VGN19_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEV7195168.1"
                     /translation="MPTPVLSEFVKAYDVRGVVPEQLNVDVAWALGAAFACEIVVPDG
                     AAGVVIGHDMRPSSPELSRAFAAGVTAHGLDATLIGLASTDGLYYASGALDLPGAMFT
                     ASHNPAQYNGIKLCRAGARPVGQDTGLTQVRDTAQRLLDSGTSAGPQGTRAGSVVERD
                     VLTDYSRFLRGLVDLSGIRPLKVVVDAGNGMGGHTVPAVLGAAAGLDALPLTVVPLYF
                     ELDGTFPNHEANPLEPENLRDLQQAVVEHGADLGLAFDGDADRCFVVDERGIAVTPSA
                     ITALVATREIQREVEAGRSAADVAVVYNVISSAAVPEIIAEHGARGVRTRVGHSFIKA
                     EMAREQAVFGGEHSAHYYFRDFWFADTGMLAALHVLAALGEQDEPLSRLAAAYSRYAA
                     SGEINSTVTDAAAATARVTDWATAQGAEPDELDGLTATHKGTQDAPMWWFNLRASNTE
                     PLLRLNVEAADEDTMTQVRDDVLALVRGEG"
     gene            complement(3197..3583)
                     /locus_tag="VGN19_04450"
     CDS             complement(3197..3583)
                     /locus_tag="VGN19_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3499 domain-containing protein"
                     /protein_id="HEV7195169.1"
                     /translation="MSLSRRCSRTACPRRALATLTYVYSDQTAVVGPLATYAEPHTYD
                     LCTEHAEGLTAPRGWEIVRLSGEYVEPEPSHDDLLALANAVREAGRPRLDAPHTARAA
                     VAPAVEGASGAVETGRRGHLRVLRDG"
     gene            3730..4074
                     /locus_tag="VGN19_04455"
     CDS             3730..4074
                     /locus_tag="VGN19_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013117567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase family protein"
                     /protein_id="HEV7195170.1"
                     /translation="MTTRRELFDELVLDSATRLEPRVGPGFAEVEFAVEDVPPSDPAP
                     WERDGVPLGRTFPGHGRQPARIVIYRRPVESRAQDLRELTSVVQDVVVEQVAALFGMA
                     PGDLDPRYGDSD"
     gene            complement(4076..5554)
                     /locus_tag="VGN19_04460"
     CDS             complement(4076..5554)
                     /locus_tag="VGN19_04460"
                     /inference="COORDINATES: protein motif:HMM:NF040160.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5719 family protein"
                     /protein_id="HEV7195171.1"
                     /translation="MSLSVLAVVRAVVVTAAGAGLVVAATRVPGVVAVGAVVGAPSSA
                     QASSSPVHGASLECPGPELVGVPGLRDLPVGVRVAAATAPLAALASTQPVATPGTLTL
                     TGMPGASLAAPGTQRGRQVAANLTAGQGAEASATQSLAPGLAAAQSWLVTSGDQRSLG
                     SVPCVRPAADQWLLAGGSAPGRQERLVLTNPGGNPVTVDVTLHGPSGPISSSIGKSLV
                     VPAHGRAAFLLDSISGSITSPAVHVVTQGGLVGAVVNDTWLNGTQPGGSDDASPSAAP
                     SRDQIIPAVDVKGLAVLRVVVPGSGEAVVQARVLTRLGPRALPSGGVSRVPGGTVRDI
                     DLSGLPAGASALQVRSDQPVVASAIFVRAGKQSLDFAWAVSTPPITTVAGMPFSDPAG
                     VTHRLDLTASTGSATAEVITVTAAGGEHAQKVSVPTDGTVSVAIPAQTSSVWVMPVSG
                     PGQLRAGVDSWIDDHTGTLITSTPLLDSALRTTTVGVRQTLE"
     gene            complement(5551..>8449)
                     /locus_tag="VGN19_04465"
     CDS             complement(5551..>8449)
                     /locus_tag="VGN19_04465"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7195172.1"
                     /translation="AALADSPGSAAAQDGSTPVVEYLWVLAADCVAAPTALGRLVDAV
                     RRSPSVAVAGPKLLVWDKANALRSVGLQLTRSGRLLPSPVVGEPDQGQYDRRSDVLAV
                     PSTGMLAKRSVCDELGWHDGLGEFGSEVDFGWRAQQSGRRVVVVPRATVRTGATPGST
                     GHTTTPRLRRQARRVALTRCSWWALPVLGAWIALSSLLAGVALLLAKQPRAAWAELSD
                     LGAVLTPRRVATARWASRQARQVRRRDLAGLFVGPGNVLRHAGDLIHDHVAFEVVARP
                     ATGGDLAAVESGPVDDDAEDLNLLGSTWASRAARNPGLLAVLTATVGSVVASRHLGGG
                     LFSSSSTGLAGGELVGVRADAWSTWHAWLDGWHGAGLGQGGEQGPYLVVLAGLSWVVA
                     HVPVLGSPYSPLGASVAVLVALAMPGATLAAYLGSRVLTHSTWPRALAALAWGTTSVV
                     TTAVAAGRLGALVAAMVVPLVAAGCVLAARRTGSTTATAATVLGAAILGAFAPALLVL
                     VVAVGVLTVVLGRGWARLRGLMLALGPVLLLGPWVATLVQEPQLILTGPGLSVWGQAQ
                     ALPWQLALLHPGGVGGYPVVLGAPLVLAGLLGLLRGGRRGAGAVVLGLVALAGLAFAL
                     AAPRLHLGVVPVDQPQGGQPISAWAGTGLLVLTLALLGSALHGSRGLPVGRAAGGWLA
                     VARWPIAAALVASVLAGLAWTGWHSVGSGLQAWTDPRPAVAIDQAESGLSNRMLVLHP
                     DVAGLRYQLLGSEPGNPVRTLPAAAANKPDTAELDAAVSALFEQGAAPGELSPSRLLA
                     DQAVGFVGLQTDASDPRLRQLDATAGLTRLGEHDGVIFWRVAVPSMSAQGDQPTPSRA
                     RVVTTTGEQAIPVIGPHGQVDVKVVVPARATLVLAEPTGWLRHARVAVDGRLLAPTDG
                     RAAYALPAGAGQLTVEVVPTDVLWRYGQGLLLVIVAFLAVPLGNRTSRRRR"
BASE COUNT         1294 a         3066 c         3037 g         1052 t
ORIGIN      
        1 gacgatgagc gcagccatcg tcctcattcc gttggtagcc atggcgtcgg ccgccctcat
       61 cgccatcctg gccgaaccgg gcgcaggccc tgcacaccgg attcttgccc tgacaccgct
      121 gcggtacacc ggccgagtct cctacggcat gtatctgtgg catccgttcg tcatcgccgt
      181 ggtcgtcgcg tggaaactcc ccgtcccggt tctggcgagc acggtgctgg cgatggcagt
      241 ggccacagcg tcctggctgc tattggagcg cccgatcctc cgaccctcgg gatcccgccg
      301 cccaccccga ccggagcacc acgccttcgg cgtcggcacc gacgatcagt ggccggtgcg
      361 ctcggacagg tccgagacgt ggagtgagac cgcgggatcc aacccgagcc ccagcgccag
      421 gtaggtcgcc gcaaagtccg tcgtcgcaat ctgacccgcc agtcgcgtca gtgggtgccc
      481 cggctgggcc tgcacctgcg acacccggac tcccgcttcc ctggccgcgt cagccaccgc
      541 ctcggccaac gtcgctgcct gagcggactc gggagtcctc gggtccggct cggcgtcacg
      601 cagcatgagc agggacagcc gaggcgagac cggtccgtcc aggtaggggt ccgcgaacag
      661 gtcaccggtg cgccgggccg cggccgcctc cccgtacgcg gcggtgtagg gaccgtcgaa
      721 acaggccacc acctgcgccg cgtcgtccgg aagctcaccc caggtcgctg gcacccgagc
      781 cgttctggcc agcatggacg cggtacgacg cgctgcgact ccgctcagcg caccatcccc
      841 gagcaccacg ggcaccccct cggccagatc tgtcgccaac accttggccg ggtttacaaa
      901 cgactccgag gagggcctgg ccgcctcagc gacctcgtcg agccggtcgg cggtgtccag
      961 cagcacctgc tcccgcacgt ccaccaggcc caggtgtccg gcggccagca gcaccggggc
     1021 cagcagggac cacaaggccg tccgagacgt gacccggcca cgaccgatgt cgatgtgcac
     1081 ccctcgagca cgggccgcca catcggcgag cggggactga ggcgcgccca ccgtcagcag
     1141 ggctgccccg cggcgagccg cctcggcagc cagggcgagc gggcctgcgg cgcgacccga
     1201 cagcgacaca gcgatgacga ggtcgagtgg ccccacccag cccggcagcg ggacgttgcg
     1261 acgcacgctg accggcaccg gggatcccgg ctcggccagc agctccagaa cgtcgcagac
     1321 gacggcagaa ccccccaggg acgcaacgag gacggaccgt ggccgttcac caccgctgac
     1381 ccgttcgatg ccaccctgcc cggacagctc gatggcttcc cggacctgcg cgccggcggt
     1441 ggccagccct cgcagggtct ggcgcgagtc gagtgccgcg atggcctcct cgctgtcgat
     1501 gcgcgactcg tccaggtagg gagccatcgc cgtgggctca ggccggcttg cgggcttcgt
     1561 cgacgagcag gacgggcacg ccgtcatcga tgcggtactg cagtccacac tcgacgttgg
     1621 tgcagtgcag ctccaccccg gtggggccct cggcgtccga cagctccgac cggcacgcgg
     1681 ggcaccgcag gatctctcgc agccacggct cgatctgcgc cttctggtcc ggcatcagcc
     1741 ttctcctctc accagggcga gaacatcgtc ccgcacctgt gtcatcgtgt cttcatcagc
     1801 ggcctcgacg ttgagccgaa gcagtggttc ggtgttcgag gcacgcaggt tgaaccacca
     1861 catcggtgcg tcctgcgtgc ccttgtgggt cgccgtcaga ccgtccagct cgtccggctc
     1921 cgcgccctga gcggtggccc agtcggtgac gcgggcggtg gccgcggccg cgtcggtgac
     1981 cgtggagttg atctcgccgg acgcggcata ccgactgtat gccgcggcca gccggctcaa
     2041 gggctcgtcc tgctccccga gggcggccag cacgtgcagg gcggcgagca tgccggtgtc
     2101 cgcgaaccag aagtcccgga agtagtagtg cgcgctgtgc tcgccaccga aaacggcctg
     2161 ctcgcgcgcc atctcggcct tgatgaagga gtgacccacc cgcgtgcgga ctccgcgtgc
     2221 accatgctcg gcgatgatct cggggaccgc cgcggaggag atgacgttgt agacgacggc
     2281 cacgtccgcc gccgaccgac ccgcctcgac ctcccgctgg atctctcggg tggcgacgag
     2341 ggcggtgatt gcactggggg tcaccgcgat gccgcgctcg tccacgacga agcaccggtc
     2401 ggcatcaccg tcgaaggcca gcccgaggtc ggccccatgc tcgaccacgg cctgctggag
     2461 gtctcgcagg ttctccggct cgagcgggtt cgcctcatgg ttggggaagg tgccgtccag
     2521 ctcgaagtag agcgggacca cggtgagcgg cagggcgtcg agacccgccg cagcgccgag
     2581 cacggcaggc acggtgtggc cacccatccc gttcccagca tcgaccacga ccttcagcgg
     2641 gcggatcccc gacaggtcga ccagaccgcg caggaatcgc gagtagtcgg tgaggacgtc
     2701 acgctcgacc acggagcccg cgcgtgtccc ctgaggacca gcgctggtgc ccgagtcgag
     2761 cagccgctgg gcggtgtctc gcacctgggt cagcccggtg tcctggccga cgggtcgggc
     2821 gccggcccgg cagagcttga tgccgttgta ctgggccggg ttgtgcgatg ccgtgaacat
     2881 cgcgccgggg aggtcgagcg ctccgctggc gtagtagagg ccgtccgtac tggccaggcc
     2941 gatcagcgtg gcgtcgagac cgtgtgcagt caccccggcc gcgaacgcgc gggagagctc
     3001 cggggaggag gggcgcatgt catggccgat caccaccccg gctgcaccgt cgggaacgac
     3061 gatctcgcag gcgaaggcag cccccagtgc ccacgccacg tcgacattga gctgctccgg
     3121 gacaacaccc cgcacgtcat aggccttgac gaactccgac agcacaggcg taggcacgcc
     3181 cgaaacccta gcgggctcag ccgtcacgca agacgcgaag gtgcccgcgg cggcctgtct
     3241 cgaccgctcc ggaggctccc tcgaccgcgg gagcgaccgc agccctcgcg gtgtgcgggg
     3301 catccagtcg tgggcggccc gcttcgcgaa cggcgttggc gagggcgagc aggtcgtcgt
     3361 gtgacggctc gggctcgacg tactcgccgg agagccgcac gatctcccag cctcgcggcg
     3421 cagtcaggcc ctcggcgtgt tcggtgcaca ggtcataggt gtgcggctca gcgtatgtag
     3481 caagcggacc cacgacggca gtctggtcgg agtagacgta ggtgagggtg gccagggccc
     3541 ggcgggggca cgcggtgcgg gaacaccttc gggacaggct cacgcgggga ctctatgcca
     3601 cgtcattcag gccgcagcac cggcacgccg tagcatggcg aggtgacttc gagcggccct
     3661 caccgcgtcc atcgcgaccg acacggacgg ggcatccggg gcccgctcgc ctggcccgcc
     3721 gtccctgcga tgaccactcg tcgcgagctg ttcgacgagc tggtgctgga cagtgcgacc
     3781 cgcctcgagc cgagggtcgg tccgggcttc gccgaggtcg agttcgccgt cgaggacgtc
     3841 ccgcccagcg acccggcccc ctgggagcgc gacggcgtcc cgctcggccg gacgttccct
     3901 ggccatgggc ggcagccggc ccgcatcgtc atctaccgcc ggccggtgga gagtcgcgcc
     3961 caggatctgc gcgagctgac ctcggtcgtg caggacgtcg tggtcgagca ggtcgccgcc
     4021 ctcttcggga tggcacccgg cgacctcgac ccgcggtacg gggactcgga ctgagtcact
     4081 cgagagtctg acgcaccccg accgtggtgg tccgcagggc cgagtcgagc aacggcgtcg
     4141 aggtgatcag ggtgcccgtg tgatcgtcga tccacgagtc gaccccggcc cgcagctgcc
     4201 ccgggcctga gaccggcatc acccagaccg agctggtctg agcggggatg gccaccgaga
     4261 ctgtgccgtc cgtggggacg ctcaccttct gggcgtgctc gcctcccgcg gcagtgacgg
     4321 tgatgacctc agcggtggcc gaaccggtcg acgcggtgag gtcgagtcgg tgagtgacgc
     4381 cggccggatc agagaacggc atcccggcga cggtcgtgat cggtggcgtg gagaccgccc
     4441 aggcgaagtc gaggctctgc ttgcccgcgc gaacgaaaat ggccgaggcg accacgggct
     4501 ggtcggagcg cacctgcagg gcgctcgccc ccgcaggcag ccccgaaagg tcgatgtcac
     4561 gcacggtccc gccgggcacc cggctgaccc cgccgctggg cagcgcgcgc gggcccaggc
     4621 gggtcaggac gcgggcctgc acgacggcct ctcccgaccc gggcaccacg acccgcagca
     4681 ccgccaaacc cttcacgtcg acggcgggga tgatctggtc gcgcgacggg gctgccgagg
     4741 ggctggcgtc gtcgctaccg ccgggctgcg tgccgttcag ccaggtgtcg ttgaccacgg
     4801 cgccgacgag gccgccctgg gtgacgacgt gaaccgccgg tgaggtgatg ctgccggaga
     4861 tggagtcaag caggaacgcg gcgcggccat gggcggggac gaccaatgac ttgccgatgg
     4921 agctcgaaat gggaccggac gggccgtgca gcgtcacgtc cacggtgacc gggttgccac
     4981 cggggttggt gagcacgagc cgctcctgac gtccgggcgc gctaccaccg gcgagcagcc
     5041 actggtcggc agcgggtcga acgcagggca ccgagcccag cgaacgctgg tcccccgagg
     5101 tgaccagcca tgactgggct gccgccagtc cgggggcgag tgactgggtg gcggaggcct
     5161 cggccccttg acccgcggtc aggttcgccg ccacctggcg gcctcgttgg gtcccgggcg
     5221 cggccaggct cgcacccggc ataccggtca gggtgagggt gccgggcgtc gcgaccggtt
     5281 gcgtactggc cagtgcggca agcggcgcgg tcgcggcggc gacccgcacg ccgaccggca
     5341 ggtcgcgcag acccgggacg ccaacgagct cggggccggg gcactccagc gacgcgccgt
     5401 gtacggggct gctgctggcc tgtgccgacg agggagcccc gaccactgca cccaccgcca
     5461 cgacaccagg cacccgcgtc gccgcgacca ccagaccggc tccggcggcg gtcacgacca
     5521 ccgcccgcac gacggcaagg acggacaggc tcatcgtcgc ctcctggacg ttcggttgcc
     5581 caagggcaca gccaggaagg ccacgatcac gaggagcaac ccctggccgt agcgccacag
     5641 gacatcggtc gggacgacct cgaccgtcag ctggcccgcg cccgcaggca gggcgtaggc
     5701 cgcgcggccg tccgtcgggg cgagcaggcg cccgtcgacg gccacacgtg cgtgccgcag
     5761 ccaaccggtc ggctcggcca ggacgagagt ggcacgggcc ggcacgacga ccttgacatc
     5821 gacctgtccg tgcgggccga tgacgggaat ggcctgttcg ccggtcgtgg tgaccacccg
     5881 cgcccgggag ggcgtcggct ggtcaccttg ggccgacatg ctcggcaccg cgacccgcca
     5941 gaagatgacg ccgtcgtgct ctccgaggcg ggtcaggccc gcggtcgcgt cgagctggcg
     6001 cagccggggg tcggaggcat ctgtctgcag ccccacgaag ccgacggcct ggtcggcgag
     6061 cagccgcgac gggctcagct cccccggcgc cgccccttgc tcgaacagcg cgctgaccgc
     6121 agcatccagc tctgcggtgt cgggcttgtt cgcggctgcg gccggcagcg ttcgcaccgg
     6181 gttccctggc tcgctgccca ggagctggta gcgcaggccg gcgacgtccg ggtggagtac
     6241 cagcatccgg ttgctcagcc cactctcggc ctggtcgatc gccactgccg gccgggggtc
     6301 ggtccaggcc tgcaggccgg agccgaccga gtgccagcca gtccaggcca acccggcgag
     6361 gacactggcg acgagggcgg cagctatcgg ccagcgggcc accgcgagcc agcccccagc
     6421 cgcgcgaccc accggaagcc cccgtgaccc gtgcagggcc gagccgagca acgccaaggt
     6481 cagcaccagc aacccggtgc cggcccacgc cgaaatgggt tggccccctt gcggttggtc
     6541 caccgggacg actcccaggt gcagtcgcgg tgcggccaac gcgaacgcca gtccggccag
     6601 ggcaaccagg cccagcacga ccgcgccggc gcctcgcctg ccaccgcgca gcaagcccag
     6661 cagcccggcg aggaccagcg gggcgccgag gaccacggga tatcccccga cgccaccggg
     6721 atggagcagg gccagctgcc agggcagcgc ctgagcctgc ccccagacgg acaggccggg
     6781 gccggtgagg atgagctggg gctcctggac cagcgtggcg acccacggcc cgaggagcag
     6841 caccgggccc agggccagca tcagcccgcg aaggcgagcc cagccccgcc ccaggaccac
     6901 ggtgaggact ccgaccgcaa cgaccagcac gagtagggcc ggggcgaacg caccgaggat
     6961 cgccgccccc agcaccgtcg cggcggtcgc ggtagtggac cccgtccgtc gcgctgcgag
     7021 cacgcagccc gcggcgacca gcggcaccac catggccgca acgagcgcgc caaggcgtcc
     7081 cgcggcgacc gctgtggtga ccacggaggt ggttccccag gcgagggctg cgagcgcccg
     7141 cggccaggtc gagtgagtga gcacccgcga ccccaggtat gccgcgagcg ttgcgcctgg
     7201 catcgcgagg gccaccagga cagccactga cgcgcccagt ggcgagtagg gcgatccgag
     7261 caccggcacg tgggcgacga cccaggacag accggcgagc acgacgaggt aggggccttg
     7321 ttctccgcct tgtccgagtc cggcaccgtg ccaaccgtcg agccaggcgt gccaggtcga
     7381 ccaggcatcc gcacggacgc ccacgagctc gccaccggcg agcccggtcg atgagctgct
     7441 gaacaggcca ccgcccaggt gccgcgaggc gaccacggac ccgacggtgg cggtgagcac
     7501 cgcgagcagg ccggggttac gagccgcccg tgatgcccag gtcgaaccca ggaggttgag
     7561 gtcctcggcg tcgtcgtcga ccggcccgct ctcgacggca gcgaggtccc cgcccgtcgc
     7621 aggccgggcg acgacctcga aagcgacatg gtcgtggatc aggtcgccgg cgtgacgcag
     7681 cacgttgccc gggccgacga acagaccggc aagatcgcgt cggcgcacct ggcgggcctg
     7741 acgggaggcc cagcgagccg tggcaactcg gcgcggggtc aacacggcgc cgaggtcgct
     7801 gagctccgcc caggcggctc gtggctgctt ggccagcagc agggcaacgc cggccagcag
     7861 gctcgacagg gcgatccagg cccccagtac gggaagggcc caccacgaac agcgggtgag
     7921 cgccaccctt ctggcctgtc gacgcagccg gggagtggtg gtgtggccgg tggacccggg
     7981 ggtcgcccct gtgcggacgg tggctcgcgg gacgacgacg acccggcggc cgctctgctg
     8041 ggcacgccag ccgaagtcga cctcggagcc gaactccccc agcccgtcgt gccagccgag
     8101 ctcgtcgcag accgagcgtt tcgccagcat gcccgtggac gggacggcca ggacatcgct
     8161 gcgccggtcg tactggccct ggtcaggctc gccgacgacc ggtgagggca gcaggcgacc
     8221 gctgcgggtg agctggagcc cgaccgaccg caacgcgttg gccttgtccc agacgagcag
     8281 cttggggccg gcgacggcga ccgacggcga ccgacgcacg gcatccacga gccggcccag
     8341 ggccgtggga gcggccacgc agtccgcggc caggacccag aggtactcca ccaccggagt
     8401 cgaaccgtcc tgtgccgcag ctgagcccgg gctgtcagcg agtgccgcg
//
LOCUS       DASYFY010000228         4272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_121655, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000228 DASYFY010000000
VERSION     DASYFY010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4272
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121655"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1274
                     /locus_tag="VGN19_04470"
     CDS             <1..1274
                     /locus_tag="VGN19_04470"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195173.1"
                     /translation="GQPNPLASNYSLHAVFNDADGIPTAADVRVSGVGVGKVTAISHD
                     PRSPGFSVVTIQISDTHAVPVYSNGFAKVRPKTLLGEKYVDLTVGSSASGEAIGSGGY
                     LPVAETGKDVSNDEIFNSFDATTRAQQQQVLAALDSATKGRAGDIQAILPQLQRVVAN
                     LTPVAQVYEKDQPQTDDIFVQLNTIMQALADEHSQLAGFLANGNVALGAIAQKDQALV
                     STLQGASNVATELNTAMNPTIAQQRQALDELASTLASENNLLFDIVGPKCNGHPCGID
                     TVIAGTLNGQVAYPNDQLNVTSPNGEGVTGRWDSMFSEPGPAGPAAGQTSTGASTCSN
                     PTVPTPNIPSKASGTCALNIVLSFHCDTIAQTLAGFLAQLPTTGPVTQATIQAACQAA
                     TGHTFPALPVSTSGPSVPGMNTTAYLAGLFG"
     gene            1271..2362
                     /locus_tag="VGN19_04475"
     CDS             1271..2362
                     /locus_tag="VGN19_04475"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195174.1"
                     /translation="MMVRVVRMFGSSKALFAAAVVSGAVVGLALSFGSSSHTAVADFS
                     NVNGLTGGNEVRIGGIEVGTVQSLDVKADPQTGQQAARVTFTVDDAHWPLRQGTSVAV
                     RPKGVLSNVYVDVEPGSPSAPSLGDSPRFDVNHTSSPVNLDELSNVFDPSVRTSIRTQ
                     LQEGVIVFGGTGIGDFNQTLANANPLTASAIPITSVLGQRTPELDRLNFEFDKISGDL
                     AREDANLRGLLVNGEQFLGVLASHEASLQGTLVHAAGTLTSIDQGLRGEEGNLTAIFQ
                     KGPNALNQAKTSADLLAPLISSVDPYIADLDVLLHEFLTATGYTQTLPPTNNAYGSLL
                     DMLRVDGSLPPSNKTAKACGGTPYNPGPC"
     gene            2362..3726
                     /locus_tag="VGN19_04480"
     CDS             2362..3726
                     /locus_tag="VGN19_04480"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195175.1"
                     /translation="MSGTGRRGGFNPLIAGFIAGAVIVLLLATLVKINLDLAAPWAST
                     HTMTAQVTDVDGISSGSDVRIAGRAVGQVTSVTAQGNYSTVTFHLDDSNWPLPGDTSA
                     SIRLATLLGQKYLQLSPGSDWAHPFTDNAVIALKATKPVVDFDQILNTFNKPTRDALT
                     SLVRTAATAVKGQEGTLQQLIPDLRDLSVHSVAPTGELVTRNAEINNILVNLGTTADQ
                     LNQSGNDLVGVIDNMNTITGALASNQGALEGYIANTDALNLNTNAVLSGGKDAAFNAG
                     LKLLAPFTTQLNQLMRTLVPETFHFATDTSPSTHQHIYQDAVNLVFEIGSATAQSNKS
                     GFFLRQYANGVDPCGLIGPTCVATTLPVAPPVPSGGGLPCLPPLPCLTLPNGPSLPNL
                     NLPVLPVPTLPAAPTLPPVSLPPILATPTPAPSPTPICVLGICTAQQASYDTATPLAR
                     WGWL"
     gene            3723..>4272
                     /locus_tag="VGN19_04485"
     CDS             3723..>4272
                     /locus_tag="VGN19_04485"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195176.1"
                     /translation="MRRQPRVNPFWSGVVAAIVLVVAMVGVVVGGIPGGPAISLPWNH
                     TMVLHVQLANADGLAPHASVDVAGVKVGEVHDVTSQGDIALATLNIDPQYSDIRSDAQ
                     VLLRPHGLFGPKYIEITPGSNSGQLLADGATINVRNTVQPVDLDQVLQALQAPEAQNL
                     RTAIVELGKAAAGKGDDVNHLLG"
BASE COUNT          752 a         1614 c         1290 g          616 t
ORIGIN      
        1 tcgggcagcc gaacccgctg gcatccaact actcactgca cgctgtgttc aacgatgccg
       61 acggcattcc caccgcggcc gacgtccgcg tcagcggcgt cggcgtcggc aaggtcacgg
      121 cgatctcaca cgatcccagg agcccgggct tcagcgtggt caccatccag atcagcgaca
      181 cgcacgccgt gcccgtctac agcaacggct tcgccaaggt ccggcccaag accctcctcg
      241 gcgagaagta cgtggacctg acggtgggct cgagcgcgag cggggaggcg atcggctccg
      301 gcggctacct gccggtggcc gagaccggca aggacgtgtc caacgacgag atcttcaact
      361 ccttcgacgc caccacccgc gcccagcagc agcaggtgct cgccgcgctc gacagcgcaa
      421 ccaagggtcg agccggcgac atccaagcga tcctgcccca gctccagcgg gtggttgcca
      481 acctcacccc ggtcgcgcag gtgtacgaga aggaccagcc gcagaccgac gacatcttcg
      541 tgcagctgaa caccatcatg caggcgcttg cggacgagca cagccagctc gccggcttcc
      601 tcgccaacgg caacgtggcg ctcggtgcga tcgcccagaa ggaccaggcg ctggtgtcca
      661 cgctccaggg ggcgagcaac gtcgccacag agctcaacac cgcgatgaac cccaccatcg
      721 cccaacagcg tcaggcgctc gatgagctcg cctccacgct ggcctccgag aacaacctcc
      781 tcttcgacat cgtcgggccc aagtgcaacg gccacccgtg cgggatcgac acggtcatcg
      841 cgggtaccct caacggacag gtggcatacc cgaacgacca gctgaacgtc acctctccca
      901 acggcgaagg cgtcacgggc cgttgggatt cgatgttctc cgaaccgggg cccgccggcc
      961 cggccgccgg gcagacgtcc acgggcgcga gcacatgcag caatcccacc gtgccgacgc
     1021 ccaacatccc gtccaaggcg tcgggcacct gcgcgctgaa catcgtgctc tccttccact
     1081 gcgacacgat cgcgcagacc ctggccggct tcctcgccca gctcccgacc acaggcccgg
     1141 tgacccaggc aacgatccag gcggcgtgcc aggccgcgac cgggcacacc ttcccggccc
     1201 ttcccgtctc gacgtccggc ccctcggtgc cggggatgaa cacgaccgca tatctcgcgg
     1261 ggctgttcgg atgatggtgc gcgtcgttcg catgttcggc tcgtcgaaag ctctcttcgc
     1321 tgccgccgtg gtcagcggtg ccgtggtggg ccttgccctc tccttcggca gctcttcgca
     1381 caccgccgtc gcggatttca gcaatgtcaa cggtctgacg ggcggcaacg aggtgcgcat
     1441 cggaggcatc gaggtgggca cggtgcagtc gctcgacgtg aaggccgatc cgcagacggg
     1501 acagcaggcg gcgcgggtga ccttcacggt cgacgacgca cactggccgc tgcgccaggg
     1561 caccagcgtg gccgtccggc ccaagggcgt cctgagcaac gtgtacgtgg acgtcgaacc
     1621 cggttctccg agcgcaccgt cgctgggcga ctccccccgg ttcgacgtca accacaccag
     1681 cagccccgtc aacctcgacg agctctccaa cgtcttcgac cccagcgttc gcacctcgat
     1741 ccgcacccag ttgcaggagg gtgtcatcgt gttcggggga acggggatcg gtgacttcaa
     1801 ccagaccctc gccaacgcca acccgctgac cgcctcggcc attccgatca cctcagtgct
     1861 cgggcagcgc acccccgagc tcgaccggct caacttcgag ttcgacaaga tcagcggcga
     1921 cctcgcgcgc gaggacgcca acctgcgcgg gctgctcgtc aacggcgagc agttcctggg
     1981 agtcctcgcc agccacgagg cgtcgctgca gggcaccctg gtgcacgcgg cggggacgct
     2041 cacctcgatc gaccagggcc tccgcggcga ggagggcaac ctcacggcca tcttccagaa
     2101 gggtcccaac gcgctcaacc aggcgaagac ctcggccgac ctgctcgcgc cgttgatctc
     2161 cagcgtggac ccgtacatcg cggacctcga cgtcctgctg cacgagttcc tcaccgccac
     2221 cggctacacg cagacgctgc cccccaccaa caacgcatac gggagcctgc tcgacatgct
     2281 ccgcgtcgac ggttcgctgc caccgtccaa caagaccgcg aaggcgtgcg gtggcacgcc
     2341 ttacaacccg ggtccgtgct gatgagtgga acaggacgcc gcggaggctt caacccgctg
     2401 atcgccggct tcatcgccgg ggcggtgatc gttcttctcc tggccacgct ggtgaagatc
     2461 aacctggacc tcgccgcgcc gtgggcctcg acccacacca tgacagcgca ggtcaccgac
     2521 gtcgacggga tcagctcggg cagtgacgtg cgcatcgccg gtcgcgctgt cggccaggtg
     2581 acgtcggtca cggcccaggg gaactacagc accgtcacct tccatctcga cgacagcaac
     2641 tggccccttc ccggcgacac gtctgcctcc atccgactgg cgacgctgct cggccagaag
     2701 taccttcagc tcagcccggg gtccgactgg gcgcacccgt tcaccgacaa cgcggtcatc
     2761 gcgctcaagg cgaccaagcc ggtggtcgac ttcgaccaga tcctcaacac gttcaacaag
     2821 ccgacgcgcg acgcgctgac gagcctggtc cgcaccgcgg caaccgcagt caagggccag
     2881 gagggcacgc tgcagcagct catccccgac ctgcgtgacc tctccgttca cagcgtcgcg
     2941 ccgaccggtg agctggtgac acgcaacgcg gagatcaaca acatcctggt caacctcggc
     3001 acgaccgctg accagctcaa ccagagcggc aacgacctcg tcggcgtgat cgacaacatg
     3061 aacacgatca ccggggccct ggccagcaac cagggagcgc tcgagggcta catcgccaac
     3121 accgacgcgc tcaacctgaa caccaacgcg gtgctcagtg gagggaagga cgccgccttc
     3181 aacgccggcc tcaagctgct cgctcccttc accacccagc tcaaccagct gatgaggaca
     3241 ctggtaccgg agacgttcca cttcgccacc gacacgagcc cgtccacgca ccagcacatc
     3301 taccaggacg cggtcaacct cgtcttcgag atcggctcgg cgacggccca gagtaacaag
     3361 tccggtttct tcctccgcca gtacgccaac ggtgtcgacc cgtgcggcct gatcgggccc
     3421 acctgcgtgg ccacgaccct gccggtggcc ccgccggtac cgtccggtgg cggcctcccg
     3481 tgcctgcccc cgctgccgtg cctcacgctg ccgaacggtc ccagcctgcc caacctgaac
     3541 ctgccggtgc tccccgtccc gaccctgccg gcggccccga ccctgccgcc ggtgtcactg
     3601 ccgccgatcc tggccacccc gacgcctgcg ccgtcaccca cgccgatctg tgtcctcggt
     3661 atctgcactg cccagcaggc cagctacgac accgccacgc cgctggcgcg atggggctgg
     3721 ctgtgagacg gcagccgcgc gtcaacccgt tctggagcgg cgtcgtcgcc gccatcgtgc
     3781 tcgtcgtggc gatggtcggt gtggtggtcg gcggcatccc gggcggcccg gcgatctcgc
     3841 tgccctggaa ccacaccatg gtcctgcacg ttcagcttgc caacgcggac gggctcgccc
     3901 cccacgcgag cgtcgacgtg gccggtgtga aggtcggcga ggtgcatgac gtcacctcgc
     3961 aaggcgacat cgccctggcc acgctgaaca tcgatcccca gtacagcgac atccgcagcg
     4021 acgcacaggt gctgcttcgt ccgcacggcc tcttcggtcc caagtacatc gagatcaccc
     4081 cggggagcaa ctccggccag ctgctcgccg atggcgccac catcaacgtc cgcaacaccg
     4141 tgcagcccgt cgacctcgac caggtgctcc aggcgctgca ggcgccggaa gctcagaacc
     4201 tgcgcacggc gatcgtcgag ctgggcaagg ccgcggcagg caagggcgac gacgtcaacc
     4261 accttttggg gg
//
LOCUS       DASYFY010000229         4154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1540579, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000229 DASYFY010000000
VERSION     DASYFY010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4154
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1540579"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VGN19_04490"
     CDS             complement(<1..480)
                     /locus_tag="VGN19_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195177.1"
                     /translation="MSDITQRGVVHTVDDERMRSAGDPQSAAPGRLQAALRPTTPISP
                     LGPARGPLARLGDRAYGLAFLLVVGLLMAYAVASYEKVFVPVVHVTLLTDRIGSQMQP
                     SSDVKIRGLIVGEVRSIETTASGARLDLALDPALAGLVPGDVTARLLPKTLFGERFVD
                     "
     gene            complement(508..1470)
                     /locus_tag="VGN19_04495"
     CDS             complement(508..1470)
                     /locus_tag="VGN19_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HEV7195178.1"
                     /translation="MMRVGAIDCGTNSIRLLVADIDATTGSLTDVVRRMEVVRLGYGV
                     DRTGFIAPEAMSRTLAMAREYAAQCRELGAQDVRFVATSASRDASNAAEFVAGVSAAF
                     GHYGITPEVISGDEEAALSFRGATGGLRAHALPGPYLVVDLGGGSTEFVRGEASVESA
                     LSVDIGCVRMSERHLHTDPPTAGEVAAAVRDIDAAVDRAATVVDFRGIASLVGLAGTV
                     TTITAHALGLDSYDPARIHLTELSPERVLEACRSLLHQSRAERAALGFMHPGRVDVIG
                     AGALIWHQVVSRLARQGVERVVTSEHDILDGIALSTAARQDLTP"
     gene            complement(1467..1994)
                     /locus_tag="VGN19_04500"
     CDS             complement(1467..1994)
                     /locus_tag="VGN19_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF501 domain-containing protein"
                     /protein_id="HEV7195179.1"
                     /translation="MTTHHQGASQEDLDAVQAQLGREPRGVAAVAHRCPCGRPDVLMT
                     EPALPDGTPFPTTFYATCPKLTGAISTLESTGLMKEMTDRLAADPELAERYAAAHEDY
                     LARRAELGEVEQIAGISAGGMPTRVKCLHVLAAHSLAVGPGVNPLGDETLALLDDWWS
                     GGSCVPAQTASPERA"
     gene            complement(1991..2413)
                     /locus_tag="VGN19_04505"
     CDS             complement(1991..2413)
                     /locus_tag="VGN19_04505"
                     /inference="COORDINATES: protein motif:HMM:NF016839.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEV7195180.1"
                     /translation="MLASVGVLLAVTLVPTLRSYLHQQGQIAALRQQVAAQRVDVANL
                     QKEQARWTDDAYVVQQARERLKFVKVGEMSYTVIDGKQPVKTVSGVASVPAASSSHPW
                     YGQLWESVQVADAGPASLVPAARAPGTPSRAPLVPAAK"
     gene            complement(2647..3936)
                     /gene="eno"
                     /locus_tag="VGN19_04510"
     CDS             complement(2647..3936)
                     /gene="eno"
                     /locus_tag="VGN19_04510"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006946760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEV7195181.1"
                     /translation="MATIDAVGAREILDSRGNPTVEVEVALDDGTIARAAVPSGASTG
                     AFEAVERRDGDKNRYLGKGVEEAVDAVLDEIGPKLVGYDASEQRLVDGVMLGLDGTDN
                     KGHLGANAILGVSLAVAKAAAESAGLPLFRYVGGPNAHVLPVPMMNILNGGSHADSNV
                     DIQEFMIAPIGAATFREALRWGAEVYHSLKAVLKEKGLATGLGDEGGFAPNLESNRAA
                     LDLILEAIDRAGYQAGSQIALALDVAASEFHNEDGTYQFEGVAKTADEMVDYYSDLVD
                     SYPLVSIEDPLNEEDWDGWKAMTDRLGAKVQIVGDDLFVTNPTRLQRGIDARTANALL
                     VKVNQIGSLTETLDAVELAHRNGYRCMMSHRSGETEDVTIADLAVATNCGQIKTGAPA
                     RSERVAKYNQLLRIEEELDEAAVYAGTGAFPRFSPQA"
BASE COUNT          660 a         1485 c         1382 g          627 t
ORIGIN      
        1 atccacaaac cgctcaccaa acaacgtctt cggcaacaac cgcgccgtca catcccccgg
       61 aaccaacccc gccaacgccg gatccaacgc caagtccaac cgcgcccccg acgccgtcgt
      121 ctcgatcgag cgcacctcac ccacgatcaa cccccggatc ttcacatccg aagacggctg
      181 catctgcgac ccgatccgat ccgtcaacaa cgtcacatgc accaccggga cgaagacctt
      241 ctcgtaggac gccaccgcgt aagccatcag cagaccgacc accagcagga aggccagccc
      301 ataggcgcgg tcgcccagcc gggccaacgg gccacgcgcg ggccccagtg gagagatggg
      361 agtcgtgggc cgcagggcag cctggagtcg accgggagcc gcggactgcg ggtctcctgc
      421 cgatcgcatc cgctcgtcgt cgaccgtatg caccactcct cgttgcgtga tgtccgacac
      481 cgtggcaacg aagggaccgc gcggaggtta cggcgtgagg tcctgacggg ctgcagtgct
      541 gagggcaatg ccgtcgagga tgtcgtgctc ggaggtgacc acgcgctcga cgccttgccg
      601 agccaggcga ctgaccactt ggtgccagat cagggcgcct gcaccgatga cgtccacccg
      661 tcccgggtgc atgaacccga gggccgcacg ctcggcccgc gactggtgca gcagggaccg
      721 gcacgcttcg agcacccgct caggggacag ttccgtcagg tggatccgcg ctgggtcgta
      781 gctgtccagc ccgagggcat gggcggtgat ggtggtgacg gtgccggcga gacccaccag
      841 cgacgcgatc cccctgaagt cgacgaccgt cgcggcgcgg tccacggccg cgtcgatatc
      901 ccgcaccgct gcagcgacct cccccgctgt gggcgggtcc gtgtgcaggt gtcgctccga
      961 catccgcaca cagccgatgt ccaccgacag cgccgactcg accgaagcct cgccccgaac
     1021 gaactccgtt gagccgccac ctaggtccac gaccagatac ggaccaggta gggcatgtgc
     1081 ccgcaggccg cccgtggctc cccggaagga caaggcagct tcctcgtccc ccgagatcac
     1141 ctcgggcgtg atcccgtagt ggccgaacgc cgcgctcacc cccgccacga actccgccgc
     1201 gttcgaagca tcgcgagagg ccgacgtggc cacgaaacgc acgtcctgag cgccgagctc
     1261 ccggcactgg gcggcatact ctcgggccat cgcgagggtg cggctcatcg cctcgggggc
     1321 gatgaacccg gttcggtcca ccccgtaccc gaggcgcacg acctccatgc ggcgcacgac
     1381 gtcggtgagc gaacccgtcg tcgcgtcgat gtccgccacc aggagacgga tcgagttcgt
     1441 tccgcagtcg atcgcgccga cgcgcatcag gcgcgctccg gcgacgccgt ctgggccggt
     1501 acacatgaac caccggacca ccagtcgtcc agcagtgcca gcgtctcgtc cccgagcggg
     1561 ttcacccccg gaccgaccgc tagggaatga gccgccagca cgtgcaggca cttgactcgt
     1621 gtcggcatcc cgcccgccga gatgccggcg atctgctcga cctcaccgag ctcggcgcgg
     1681 cgggccaggt agtcctcatg ggcagcggca taccgctcgg cgagctcggg gtccgcggcc
     1741 agccggtcgg tcatctcctt catgagcccg gtcgactcca gcgtcgagat ggctccggtg
     1801 agcttggggc aggtcgcata gaacgtggtc gggaagggcg ttccgtcggg cagggctggc
     1861 tcggtcatca gcacgtcggg gcgaccgcac gggcatcgat gcgccactgc ggcgaccccg
     1921 cggggttcgc gtccgagctg cgcctgcacc gcgtcgaggt cctcctgcga cgcgccctgg
     1981 tggtgcgtgg tcacttggct gcggggacca gcggtgcgcg gctcggcgtc cccggagcgc
     2041 gcgcagccgg aaccagcgac gcgggacccg catcggcgac ctggacggac tcccaaagct
     2101 ggccgtacca cggatggctg ctgctggcag ccggcaccga cgcgactccg gacaccgtct
     2161 tgacgggctg cttcccgtcg atgacggtgt aggacatctc gcccaccttg acgaacttca
     2221 ggcgttcgcg ggcctgctgg acgacgtacg cgtcgtccgt ccaccgcgcc tgttccttct
     2281 ggaggttggc gacatcgacc cgctgggcgg ccacctgctg gcgcagcgcc gcgatctggc
     2341 cctgctggtg aaggtaggac cgcaacgtgg gcaccaaggt caccgccagc agcacgccga
     2401 ccgaagccag cacgaccgac cgcagcacag cccgcgacgc gcgacggtcc tgaacgccgc
     2461 gaggtggtgc cggcttgcgg acaccggacg tcgtcgcggg acgggggcgt ccgggaccca
     2521 cgccgggtcg cgcgtgggtc gaccggggtg acgaggtgcg tcgcaccggc ttacgcccct
     2581 ctgcgccgtg tccggcgtgt ccgccgcgtc ccgttgttgg catcgaccca gaacccctgg
     2641 gttccgtcag gcctgcggcg agaagcgcgg aaaggcgccg gtaccggcat acacggcggc
     2701 ctcgtcgagc tcctcctcga tgcgcagcag ctggttgtac ttggccaccc gctcagagcg
     2761 cgcgggcgcg cccgtcttga tctggccgca gttcgtggcg accgcgaggt cggcgatggt
     2821 gacgtcctcg gtctcgccgg accggtggct catcatgcag cggtagccgt tgcggtgggc
     2881 cagctcgacg gcatcgaggg tctcggtgag cgagccgatc tggttgacct tgaccaggag
     2941 tgcgttggcg gtccgcgcgt cgatcccgcg ctgcagccgc gtggggttgg tgacgaagag
     3001 gtcgtcgccg acgatctgga ccttcgcgcc gaggcggtcg gtcatggcct tccagccgtc
     3061 ccagtcctcc tcgttgagcg ggtcctcgat cgagacgagc gggtaggagt cgaccaggtc
     3121 ggagtagtag tcgaccatct cgtcggcagt cttcgcgaca ccctcgaact ggtaggtgcc
     3181 gtcttcgttg tggaactcgc tggccgccac gtccagggcc agggcgatct ggctgcccgc
     3241 ctggtagccc gcccggtcga tcgcctcgag gatgaggtcg agagccgcgc ggttcgactc
     3301 gaggttgggc gcgaagccgc cctcgtcgcc caggccggtg gccaggccct tctccttgag
     3361 caccgccttg agcgagtggt agacctccgc gccccagcgc agcgcctcac ggaaggtggc
     3421 ggcgccgatg ggcgcgatca tgaactcttg gatgtcgacg ttggagtcgg cgtggctacc
     3481 accgttgaga atgttcatca tcggaacggg cagtacgtgc gcgttggggc cgccgacgta
     3541 gcggaacaag ggtagaccgg cagactccgc tgccgccttg gccaccgcaa gcgacacccc
     3601 cagaatcgcg ttggcaccca ggtggccctt gttgtcggtg ccgtccagcc cgagcatcac
     3661 accgtcgacc agccgctgct cgctcgcgtc gtaacccacg agcttggggc cgatctcgtc
     3721 gagcacggcg tcgacggcct cctcgacacc cttaccgagg tagcggttct tgtcgccgtc
     3781 cctccgctcg acggcctcga aggccccggt cgaggccccg gaaggcactg cggcgcgggc
     3841 gatggtgcca tcgtccagag ccacctccac ctcgaccgtg gggttgccac gggagtcgag
     3901 gatctcgcga gcgcctactg cgtcaatggt ggccacagac ttctccatcg tgggtcgaaa
     3961 gggtgctggt acgtcagccc cgaggctacc cgctcagcgt tcgacgctcg gtcaccgacc
     4021 cgcgccccaa gccccaaggg ggcgacgacc caaatcgtcc caaaatccgg acgaaccttg
     4081 acttttcgca gaccgaagtc aacccatttg cgctgttacc ttccccacac ccactgaccg
     4141 gtggggacag agcc
//
LOCUS       DASYFY010000230         5086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1488210, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000230 DASYFY010000000
VERSION     DASYFY010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5086
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1488210"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..1299)
                     /gene="ilvA"
                     /locus_tag="VGN19_04515"
     CDS             complement(76..1299)
                     /gene="ilvA"
                     /locus_tag="VGN19_04515"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006549 - isoleucine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEV7195182.1"
                     /translation="MASPLLSVSVDDIRAAQDLLSGVVRPTPLEFSRALADRVGTEVY
                     LKCENLQRAGSFKIRGAYTRMARLSPEEKARGVVAASAGNHAQGVALAGQLLGIDVKV
                     YMPYGAPMPKLTATKAYGATIEQVGTTIDECLVKAREWEAQSGAVLIHPFDHTDIVAG
                     QGTAGLEILEQCPDVKTIVVSTGGGGLLSGIAVAVKALRPEVRVIGVQAEQAAAYPLS
                     LAAGKPVAYENMQTMADGIAVGMPGDVTYALVRDLVDDIETVSEEGLSRALLFLLERA
                     KLLVEPAGAAAVAHLMERAGQPLEGPVVAVLSGGNIDPLLLLRIIRHGMAAAGRYLQF
                     RVRVSDRPGHLARLLADCAAVDANVLEVEHIRTGTTITVDEVEIGLQLETRGPQHCEE
                     VLRTLRSKGYQLKFG"
     gene            complement(1389..2252)
                     /locus_tag="VGN19_04520"
     CDS             complement(1389..2252)
                     /locus_tag="VGN19_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195183.1"
                     /translation="MTVEVSDSQVSVTADLRRPEIRETTLLHQSLAIVRRNLIHIKRM
                     PEMLMDVTIQPVMFVLLFAYVFGGSITVKGSAAGYREWLMGGIMGQTIAFASAVVAIG
                     LTADLGNGIVDRMRSLPINSAAVLVGRSLSSLIHSSIGVLVMSVTGLAVGWRIRGGVG
                     DALLAYGLLLLWGFAMIWLGILVGSSLRSVEAVNGVMFTTLFPITFLANTFAPTERMT
                     PWLRTIAEWNPISSLVQAVRELWGNAGPAAADAALPLHHPVLTTILWTVGITLVTAPL
                     SVRAFRRRTQQ"
     gene            complement(2249..3223)
                     /locus_tag="VGN19_04525"
     CDS             complement(2249..3223)
                     /locus_tag="VGN19_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012878125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195184.1"
                     /translation="MSTPAIEAEHLVKTFGDQTAVDDVSFVVPQGSVLGLLGPNGAGK
                     TTTVRMMTTLTTPTSGTARVAGHDVVRDAHAVRRSMGLTGQAATVDELLTGRENLRLI
                     GSLYGLTTSYVRQAGADLLERFSLAEAADRPAKTYSGGMRRRLDLAVSLIATPPVLFL
                     DEPTTGLDPRSRVELWEVLRGLVKDGTTLLLTTQYLEEADHLADRIVVIDKGRVIAEG
                     TPLELKDRSGRASIVLTVSRAEDLRTAENLLRAHVSEVHVDEAARQLTAPAEGLPDMT
                     RIAAVFEGSAIELDDLGLKRPSLDDVFLHLTGHRAEQSTTDAEQELVS"
     gene            complement(3350..3766)
                     /locus_tag="VGN19_04530"
     CDS             complement(3350..3766)
                     /locus_tag="VGN19_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010550773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195185.1"
                     /translation="MSDTPMLMTPVLDLVVLDCPDPQALAGFYSTILGWPFEDDSSAD
                     WVTLRPPGEAGEAGRPVGRITLAFQRVEGYQPPTWPQGPRPQHFHLDFMVSDIDAAEP
                     AVLAAGATVPEHQPSETGSFRVYLDPAGHPLCLCRG"
     gene            complement(3776..>5086)
                     /locus_tag="VGN19_04535"
     CDS             complement(3776..>5086)
                     /locus_tag="VGN19_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate mutase L"
                     /protein_id="HEV7195186.1"
                     /translation="FLCVDFGSTFTKAALVSGDGRLLATAATPTTIGSDVLDGYRLLR
                     SELAVHGVPDEVLACSSAGGGLRLAVVGYEREVTAEAGHRVGLSAGARVVHVASGPMS
                     GADVAALRGSHPDLVLLVGGTDGGNADVLRHNASRLAKSRLRAPVVVAGNTSAGEQVS
                     ELLSSTGRHFTLTENVLPAIGVIAPEPARAALRRAFLEHVIGGKGLSRGPEFARLVQA
                     PTPDAVLDGVEVLAQTLDSDVLVIDIGGATTDVYSALRPQGEDAGLGKEVVAPLWQSR
                     TVEADLGMRWNAEGIVEAARREHVALPEETEAYAAKVAAHPAHLPADDREQTVELALA
                     RAAAVVAVRRHARPAGPGSSPRPLSDVRLLVGSGGVLRHACPAGRAGVLGAVVEDHAG
                     GWRVPRQAELVTDAAYLLFAVGLLREREPTVARRLAQAVVGGRF"
BASE COUNT          809 a         1789 c         1746 g          742 t
ORIGIN      
        1 aagccctaca tcccctgatc cgcccctacc tgacgaaggg ccgcacccac cgggtgcggc
       61 ccttcgaggt ttgtctcagc cgaacttgag ctggtatccc ttgctccgca gggtgcgcag
      121 tacctcctcg cagtgctgcg ggccacgtgt ctccagctgc aagccgatct cgacctcgtc
      181 gacggtgatg gtggtgccgg tccggatgtg ctcgacctcg aggacgttgg cgtcgacagc
      241 ggcacagtcg gccagcaggc gggccaggtg cccgggacgg tcggagacgc gcacccggaa
      301 ctgcaggtag cgtccggccg cggccatgcc atggcggatg atccgcagca gcagcaacgg
      361 gtcgatgttt ccaccggaga gcacggcgac gaccggaccc tcgaggggct ggccggctcg
      421 ctccatcagg tgggccactg cggcggcacc ggcgggctcg accaacagct tcgctcgctc
      481 gagcaggaag agcagcgccc gcgacagccc ctcctcgctg accgtctcga tgtcgtcgac
      541 cagatccctg accagcgcat aggtgacgtc acccggcata ccgacggcga tgccgtcggc
      601 catcgtctgc atgttctcgt acgcgacagg tttgcccgcc gcgagcgaca acgggtatgc
      661 cgcggcctgc tcggcttgca ccccgatcac ccggacctcg gggcgcaggg ccttgacggc
      721 cacggcgatg ccggagagca gaccgccacc gccggtgctc acgacgatcg tcttgacgtc
      781 ggggcactgc tcgaggatct ccagaccagc ggtgccctga cccgccacga tgtccgtgtg
      841 gtcgaagggg tggatcagca cggcgccgct ctgcgcctcc cactcgcggg ccttgaccag
      901 gcactcgtcg atggtcgtgc cgacctgctc gatggtcgcg ccataggcct tggtcgccgt
      961 cagcttgggc atgggggcgc cgtagggcat gtagaccttg acgtcgatac ccaggagctg
     1021 gcccgcgagc gcgacgccct gggcgtggtt gccggcactg gcggccacga ctccgcgggc
     1081 cttctcctcc ggggagagcc gcgccatccg tgtataagcc ccgcggatct tgaacgagcc
     1141 cgcacgctgg aggttctcgc acttcaggta cacctcggtg ccgacgcggt cggcgagggc
     1201 ccggctgaac tcgaggggcg tggggcggac gacaccgctg agcaggtcct gcgcagcgcg
     1261 gatgtcgtcc acggaaacgg acagcaacgg tgatgccatg gcggcaggct atcgccccgg
     1321 cacggagggt ccggaccact cccgcgtgtg gcttgggagc tgttcgcgcc ggtgcggggt
     1381 ccggcccctc actgctgggt gcgccgccgg aacgcccgga ccgagagggg tgccgtgacc
     1441 agcgtgatcc ccacggtcca caggatcgtc gtgagcacgg ggtggtgtag cggcaacgcg
     1501 gcgtccgcgg ccgccggtcc ggcgttgccc cacagctcgc ggaccgcctg caccaacgag
     1561 gagatcgggt tccactcggc gatggtgcgc aaccacggcg tcatccgctc ggtcggcgcg
     1621 aaggtgttgg ccaggaacgt gatcgggaac agggtcgtga acatgacgcc gttcacggcc
     1681 tcgaccgatc gcaggctgga ccccacgagg atgccgagcc agatcatcgc gaagccccac
     1741 aggagcagga gcccgtacgc cagcagcgcg tcgccaacgc cgcccctgat gcgccagccc
     1801 accgccagcc cggtcaccga catcacgagc acgccgatgc tggagtggat caggctggac
     1861 aggctgcggc ccacgagcac ggccgcggag ttgatcggta gggagcgcat ccggtcgacg
     1921 atgccgttgc cgagatcggc ggtgagcccg atggccacca ctgcggaggc gaacgcgatc
     1981 gtctggccca tgatgccgcc catcagccac tcgcgataac ccgcggccga ccccttgacc
     2041 gtgatcgagc cgccgaacac ataggcgaac agcagcacga acatcaccgg ctggatagtg
     2101 acgtccatca gcatctcggg catgcgcttg atgtggataa ggttgcggcg aacgatcgcg
     2161 agcgactgat gaagcagggt ggtctcgcgg atctcgggtc gcctcaggtc ggcggtcacg
     2221 ctcacctggg agtcgctcac ctcgacggtc atgacaccag ctcctgttcc gcgtcggtgg
     2281 tggactgctc ggcccggtga cccgtgaggt ggaggaagac gtcgtcgagg ctgggtcgct
     2341 tgagcccgag gtcatcgagc tcgatggcac tgccctcgaa gaccgcggcg atccgggtca
     2401 tgtcaggcaa cccctcggcc ggggccgtga gctgacgggc cgcctcgtcg acatggacct
     2461 cggacacgtg ggcgcgcaac agattctcgg cggtccggag gtcctcggcc cgagacacgg
     2521 tcaacacgat gctcgccctg ccgctgcggt ccttcagctc gaggggggtt ccctcggcga
     2581 tgacccggcc cttgtcgatg acgacgatcc ggtcggcgag atggtcggcc tcctccaggt
     2641 actgcgtcgt gagcagcagc gtggtgccgt ccttgaccag cccgcgcagc acctcccaga
     2701 gctcgacccg gctccgtggg tccagacccg tggtcggctc gtcgaggaac aggaccggcg
     2761 gcgtggcgat gaggctcacg gccaagtcca ggcgacgacg catgccaccg gagtacgtct
     2821 tggcgggacg atcggccgcc tcggccagcg agaatcgctc cagcaggtcg gcgccggcct
     2881 gccgcacgta ggacgtggtc aggccataga gcgatccgat cagacgcagg ttctcgcgac
     2941 cggtcagcag ctcgtcgacg gtggcggcct gcccggtgag ccccatcgac cgccggaccg
     3001 cgtgcgcgtc gcgcacgaca tcgtgcccgg ccaccctcgc cgttccgctc gtcggagtcg
     3061 tcaaagtcgt catcatgcga accgtggtcg tcttgcctgc gccgttgggc cccagcagac
     3121 cgagcaccga accttggggc accacgaagc tgacgtcgtc gacggctgtc tggtcgccga
     3181 acgtcttgac gaggtgctcc gcctcgatcg ctggcgtgct catggcttca ccgtaggtgt
     3241 gcgaggtgac gcggtgcgaa ccatttctgt gtcctcccgg ctatcgcgtt atatcgcgtt
     3301 gttggaacac gttatatcgc gagttggtcg aagcgcaata ccccaaggat cagccccggc
     3361 agaggcataa cggatggcca gccgggtcga ggtacacgcg gaagctcccc gtctcggacg
     3421 gctggtgctc gggcacggtc gcgccagccg ccagcactgc gggctcagcc gcgtcgatat
     3481 cggagaccat gaagtcgagg tggaagtgct ggggtctcgg cccctgcggc caggtcgggg
     3541 gctgatagcc ctccactcgc tggaaggcca gcgtgatccg cccgaccggt cgcccggcct
     3601 caccggcctc gccaggcggc cggagggtga cccaatcggc cgacgagtcg tcctcgaagg
     3661 gccagccgag gatcgtggag tagaagccag ccagggcctg gggatcggga cagtccaaga
     3721 cgacgaggtc gagaaccggg gtcatcagca tgggcgtgtc gctcataccc agacgctaga
     3781 accggccacc gacaaccgcc tgggccaggc gtcgggccac cgtcggctcg cgctctcgga
     3841 gcaaccccac cgcgaacagc aggtaggccg cgtccgtgac cagctcggcc tgacgtggca
     3901 cccgccatcc cccggcgtga tcctcgacga ccgcgccgag cacccctgcg cgcccggcgg
     3961 gacaggcatg ccgcagcact ccgcctgagc cgacgaggag gcgcacgtcg gacagcggac
     4021 gcgggctcga gccaggtcct gcgggccgag catggcggcg gacggcgacg acggcggcag
     4081 ctcgtgccag cgccagctcg accgtctgct cgcggtcatc cgccggaagg tgggccggat
     4141 gggccgccac cttcgcggca tacgcctcgg tctcctcggg gagggcaacg tgctcgcgcc
     4201 gggcggcctc cacgatgccc tcggcgttcc accgcatccc cagatctgcc tcgaccgtgc
     4261 gcgactgcca caggggagcc acgacctcct tgcccagacc ggcatcctca ccctgcggac
     4321 gcaacgcgga gtagacgtcg gtcgtcgccc cgccgatgtc gatcacgagc acgtctgagt
     4381 ccagcgtctg ggccagcacc tccaccccgt cgaggacggc gtcaggtgtc ggcgcctgga
     4441 ccagccgggc gaactcgggc ccccgcgaca gccccttccc gccgatgaca tgctcgagaa
     4501 aggcgcgacg cagcgcggct cgtgcgggtt cgggggcgat gaccccgatg gcggggagca
     4561 cgttctcggt gagcgtgaag tggcgacccg tggaggagag cagctcgctc acctgttctc
     4621 ctgcactcgt gttgcccgcc accaccacgg gcgccctcag acggctcttg gcgagtcgag
     4681 acgcgttgtg ccgcaacacg tccgcgttac cgccgtccgt gccgccgacg aggagcacga
     4741 ggtcggggtg gctgccgcgc agggctgcga catccgcgcc cgacatcggt ccgctcgcca
     4801 cgtggacgac ccgcgccccg gcgctcaggc cgacccggtg ccctgcctcg gcggtcacct
     4861 cgcgctcgta gccgaccacg gccaaccgca gccctccccc ggcactcgag caggcgagca
     4921 cctcgtccgg gacgccgtgg acggccagct ccgaacgcag cagccgatac ccgtccagaa
     4981 cgtcgctgcc gatggtcgtc ggggtggccg cggtcgccag caaccggcca tccccagaga
     5041 ccagtgccgc cttggtgaac gtcgacccga agtcgacgca gaggaa
//
LOCUS       DASYFY010000231         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1068619, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000231 DASYFY010000000
VERSION     DASYFY010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068619"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VGN19_04540"
     CDS             complement(<1..573)
                     /locus_tag="VGN19_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit B"
                     /protein_id="HEV7195187.1"
                     /translation="MNAHLLLAALPTALRKLDPRHVFRSPVMFVVWVGSLLTTYFCVV
                     HPSTFAIVTTIWLWATVVFANMAEAVAEGRGKAQADSLRRAKKETTARRLLSGGAEEV
                     VPATSLGVGDRVVVQAGEVIPGDGDVVEGIASVDESAITGESAPVIRESGGDRCAVTG
                     GTTVLSDRIVVEIKTEPGQSFLDRMIALVEG"
     gene            complement(570..>1895)
                     /gene="kdpA"
                     /locus_tag="VGN19_04545"
     CDS             complement(570..>1895)
                     /gene="kdpA"
                     /locus_tag="VGN19_04545"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEV7195188.1"
                     /translation="VTNTNWQAYAGESGVTPLTQAVGLTVQNFVSAAVGLAVAVALVR
                     GLARRHTDQLGNFWVDLTRSITRVLLPISIVGAVILMVGGVIDNLSAPITVHTLAGGS
                     QVIQGGPVASQGIIKILGTNGGGFFNANSAHPFENPNAVTDLFQIFLLLVIGFTLPRM
                     YGVMVGDRRQGWSILGLMTTLWVAGVVVATRAELLAGRGLGGALEGKEIRFGVWASAL
                     FGVSTTGTSTGAVNSAHESFSPIGGGMLLTNMVFGEISPGGVGTGLYSALVVAVLAVF
                     IAGLMVGRTPEFLGKTIGRHEITLAALVTLVMPALVLFGSGLAIALPREQANLLAAGP
                     HGLTEMVYAYASATNNNGSAFAGLTADAPFFNLTLSVVMALGRFLPIVLVVALAGRLA
                     QQGRRPAPVATMPTHTPLFVTLLVGVAVIVTALTFFPALALGPIAEALS"
BASE COUNT          334 a          639 c          659 g          263 t
ORIGIN      
        1 accttcgacc agggcgatca tcctgtccag gaagctctga ccgggctcgg tcttgatctc
       61 cacgacgatg cggtccgaga ggacggtcgt gccccccgtg acggcgcatc ggtcgccacc
      121 ggactcccgg atcaccggcg ccgactcccc ggtgatggcg gactcgtcga cggaggcgat
      181 gccttcgacg acgtcgccgt cgccggggat gacttcaccg gcctgcacca ccactcggtc
      241 gccgacgccc aggctcgtcg ccggcacgac ctcctcggca ccccctgaca ggagccgacg
      301 cgcggtcgtc tccttcttcg cacggcgcag cgaatcggcc tgggccttgc cgcgcccctc
      361 ggcgaccgcc tcggccatgt tcgcgaagac gactgtggcc cacagccaga tcgtggtgac
      421 gatggcgaac gtggacgggt gcacgacgca gaagtacgtc gtcagcagcg agcccaccca
      481 caccacgaac atcaccggcg agcggaacac gtgacgcggg tcgagcttgc gcagggcggt
      541 gggtagtgcg gccaggagca ggtgggcgtt cacgagagag cctcggcaat cggcccgagg
      601 gccagcgcag ggaagaaggt gagggcagtg acgatgacgg caacgccgac cagcagcgtg
      661 acgaacagcg gggtgtgggt gggcatcgtc gcgacggggg cgggtcgtct gccctgctgg
      721 gccagacgtc ccgccaacgc gacgacgagc acgatcggca ggaagcgccc cagcgccatc
      781 accacactga gcgtcaggtt gaagaagggt gcgtccgccg tcagtcctgc aaaggcgctg
      841 ccgttgttgt tggtggccga cgcgtacgca tagaccatct cggtgagccc gtggggtccg
      901 gcagccagga ggttggcctg ctcgcgaggt agcgcgatgg ccaggccact gccgaacagg
      961 accagggccg gcatgaccaa ggtgacgagc gcggcgagcg tgatctcgtg gcgcccgatg
     1021 gtcttgccca ggaactcggg tgtccgaccg accatgagcc cggcgatgaa caccgccagg
     1081 accgcgacga ccagcgccga gtacaggccg gtgccgacgc cgcccggaga gatctcgccg
     1141 aagaccatgt tcgtcaacag catgcctccg ccgatcggcg agaagctctc gtgggccgag
     1201 ttgacggcgc ccgtcgaggt tcccgtggtg ctgaccccga acagggccga ggcccagact
     1261 ccgaaccgga tctccttacc ctccaacgcc ccacccaggc cacgaccggc cagcagctcg
     1321 gcccgcgtcg cgacaaccac gccagcgacc cacagggtcg tcatcagccc caggatggac
     1381 cagccctgac gcctgtcccc caccatgact ccgtacatgc gcgggagggt gaagccgatg
     1441 accaggagca ggaagatctg gaagaggtcg gtgaccgcgt tggggttctc gaacgggtgc
     1501 gccgagttgg cgttgaagaa gcctccaccg ttcgtgccga ggatcttgat gatcccctgc
     1561 gaggcgaccg gtccgccctg gatgacctgt gacccgccgg ccagggtgtg cacggtgatc
     1621 ggggcgctga gattgtcgat caccccgccg accatcagga tcacggcccc gacgatcgag
     1681 atgggcagca gcacgcgggt gatgctgcgg gtgaggtcga cccagaagtt tccgagctgg
     1741 tcggtgtgcc tgcgcgcgag tccacggacc agggcgacgg ccaccgcgag acccaccgcg
     1801 gcggacacga agttctggac ggtgagcccg acggcctggg tgagcggggt gacgccgctc
     1861 tcgccggcat acgcctgcca gttcgtgttg gtgac
//
LOCUS       DASYFY010000232         3130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1278750, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000232 DASYFY010000000
VERSION     DASYFY010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3130
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1278750"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..853
                     /locus_tag="VGN19_04550"
     CDS             <1..853
                     /locus_tag="VGN19_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEV7195189.1"
                     /translation="EELVKRFDPRTTLATLLASAAGFASAHLLLHPSAAADFRVPVLA
                     EPTLAQAPLVLVVGVTSGLLGVAYNAAVMKGLRVADTSRWPVVARAALIGGLVGGLGW
                     VAPGVVGGGDNLTQQALLGQGAIAAVTGVLVLRFVLGVLSYAACTPGGLFAPMLVLGS
                     HLGLLVALVGHAVAPHQTPEPASLALIAMAAFFTATVRAPVTGIVLATEMTSSTTLLA
                     PMLGACAIAMLTANAFRSTPIYDQLTRRAVSAFRVNTIEASSAMAGWGGVVDSSSRPA
                     ASGGPRA"
     gene            complement(779..2077)
                     /locus_tag="VGN19_04555"
     CDS             complement(779..2077)
                     /locus_tag="VGN19_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018775516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEV7195190.1"
                     /translation="MHVSAIALIAATLFVWGLVSKRLARADLTAPIVFIVVGAALAWA
                     GLVDGPEESAKLTPLVEITLVWVLFSDAAHLPMRELRRDVWRYLRLLVVGLPLTVLLG
                     WALAAWFWPDLGLWLALFVGAALAPTDAALGIPVVTNPVVPSRIRQLITVESGLNDGI
                     ATPVVMVAIAGAAAAAGLEGHEGAGHAVVQLALGVVVGSAVGAAGGWLLRMARQHDLA
                     AEDFTGVAVLALGLLAYAAALVLGGNGFVAAFCGGLAFGACAGRRGPEELVYLEQTGE
                     LVSALVWLAFGVIAIPIMLERVDALMLLYAAISLTLVRMLPVALSLVGSGLDRRTVLF
                     VGWFGPRGLASLVFALLALEGLGPVADEAVAVVAVTVLLSVLAHGVSAAPLAARYGRA
                     AAAAGPEAGGPVDVIELRPGSAARRRAGRRVDDTTPAGHG"
     gene            complement(2106..2768)
                     /locus_tag="VGN19_04560"
     CDS             complement(2106..2768)
                     /locus_tag="VGN19_04560"
                     /inference="COORDINATES: protein motif:HMM:NF022589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAP family protein"
                     /protein_id="HEV7195191.1"
                     /translation="MDGIAAVLPFAVGVAISPVPIITVILMLFSSRARINGPMFALGW
                     AVALAVVSGIVLVAGDAASDSATTVGVSWSQVLFGAVFLVLAGRSWKKRPAPGEQPEP
                     PKWMAGIDSLSPGRALAFGLLLAGVNPKNLLLAAGAGAAVAGLALPTTNAVISLLVFV
                     VVASLTIAGPVTYYLVGGESARTTLDATKEWLALHNDAVMTVLFLVLGVNLISKGIPP
                     LT"
BASE COUNT          513 a         1117 c         1081 g          419 t
ORIGIN      
        1 cgaggagctc gtcaaacggt tcgacccccg caccacgctc gccacgttgc tggcgtccgc
       61 cgcaggcttc gccagtgcgc acctgctcct gcacccttcc gccgcagccg atttccgggt
      121 gccggtcctg gcggaaccca ccttggcgca ggcgcccttg gtgctcgtcg tcggcgtgac
      181 cagcggcctc ctcggtgtcg cctacaacgc cgcggtgatg aagggcctgc gggtcgccga
      241 cacgagccgc tggccggtcg tggcccgcgc cgccctgatc ggcggcctcg tcggagggct
      301 cggctgggtc gccccgggag tcgtcggcgg cggggacaac ctcacccagc aggccttgct
      361 cggccaaggc gccatcgccg ccgtcaccgg cgtgctggtg ctgcgcttcg tcctgggggt
      421 gctctcgtat gccgcgtgca ctcctggcgg actcttcgca ccgatgctcg tgctcggctc
      481 gcacctcggc ctgctcgtcg cgttggtcgg ccatgcggtg gcgccacacc agacgcctga
      541 accggcctcg ttggcactga tcgccatggc ggccttcttc accgcaaccg tccgggcgcc
      601 ggtgaccggc atcgtgctgg ccaccgagat gacctcgtcg acgaccctcc tggcgcccat
      661 gctcggcgcc tgcgcgatcg cgatgctgac cgccaatgcg ttcaggtcca cgccgatcta
      721 cgaccagctg acgcgacgag cagtctctgc cttcagggtg aacacgatcg aagcctcgtc
      781 agccatggcc ggctggggtg gtgtcgtcga ctcgtcgtcc cgcccggcgg cgagcggcgg
      841 accccgggcg tagctctatg acatcgaccg ggccacctgc ctccggaccc gcggcggccg
      901 ccgcccttcc gtatcgcgcg gccaagggtg ccgcactgac cccgtgggcc agcacactga
      961 gcaggactgt tacggcgaca accgcgacgg cctcgtcggc gaccggcccg agaccctcca
     1021 aggcgagcag tgcgaagacg agtgaggcca gccccctcgg accgaaccac cccacgaaca
     1081 gcacggtccg gcggtcgaga ccactgccga ccaaggacag ggccaccggc agcatccgca
     1141 ccagggtgag gctgatggcg gcatacagca gcatgagggc gtcgacgcgc tcgagcatga
     1201 tcgggatggc gatgactccg aaggccagcc acaccagtgc cgagacgagc tcacccgtct
     1261 gctcgaggta gacgagctcc tccggaccac ggcgcccggc gcaggcgccg aaggccagcc
     1321 caccgcagaa cgcggcgacg aacccgttgc cgcccaggac gagcgcggcg gcgtacgcga
     1381 gcagccccag ggcaaggaca gcaacgcctg tgaagtcttc ggcggccagg tcgtgctgcc
     1441 gggccatgcg taggagccag ccgcccgcgg cgccgaccgc ggatccgacc acgaccccca
     1501 gggccagctg gacgacggcg tggccagcac cctcgtgacc ttcgaggccg gctgcggccg
     1561 ccgcgccggc gatggcgacc atgacgacag gggtggcaat cccgtcgttc aacccgctct
     1621 cgaccgtgat cagctgacgg atgcgggacg ggacgacggg attggtgacc accgggatcc
     1681 cgagcgcagc gtcggtcggc gcgagggcgg cgcccacgaa cagtgccaac cacagcccca
     1741 ggtcgggcca gaaccacgcg gccagagccc atccgagcag gaccgtcagg ggcagtccga
     1801 cgacgagcag gcggaggtag cgccacacgt cacggcgcag ctcgcgcatc ggcaggtggg
     1861 cagcatccga gaagagcacc cagaccaggg tgatctcgac gagtggggtg agcttcgccg
     1921 actcctcagg cccgtcgacc agccctgccc acgcgagtgc ggcaccgacg acgatgaaca
     1981 cgatcggcgc tgtcaggtcg gcgcgtgcca gccgcttgga gaccagcccc cagacgaaca
     2041 gggttgccgc gatgagggcg atcgcgctga cgtgcatggc cgtcccttct gccgggttcg
     2101 atgcatcacg tgaggggcgg gatgcccttc gagatgaggt tcacgccgag cacgaggaag
     2161 agcaccgtca tgacggcgtc gttgtgaagc gcgagccatt ccttggtcgc gtcgagggtg
     2221 gtgcgggctg actcaccgcc gaccaggtag taggtcaccg ggccggcgat cgtcaggctc
     2281 gcgacgacga cgaagaccag cagggagatg acggcattcg tcgtcggcag cgccaagccg
     2341 gcaacggccg caccagcgcc agccgcgaga aggaggtttt tcgggttgac ccccgccagc
     2401 agcagcccga acgcgagtgc cctgccgggt gacaacgagt cgatgccggc catccacttc
     2461 ggcggctcag gctgctcccc gggcgccggg cgcttcttcc agctgcgccc cgccaagacc
     2521 aggaagacgg cgccgaagag cacctgcgac cacgagaccc cgactgtggt ggcgctgtcc
     2581 gatgccgcgt cgcccgccac gaggacgatc ccgctgacga cagcgagcgc cacggcccag
     2641 ccgagggcga acatgggacc gttgatcctg gcgcggctcg agaacaacat gaggatcaca
     2701 gtgatgatcg ggaccgggct gatcgcgaca ccgacggcga agggtaggac tgcggcaata
     2761 ccgtccatgt cgggctctcc tgttgacctg ttgccttccc ccggcccgcc gtggagcggc
     2821 gaggcggcgc tcggcaccgg agtccatcgt cgcgccccga ccagggccag tgggtcatcc
     2881 cggctgggtg acctttgacg accgtgacgg gtgccccccg tgcacacacc gacgatgaac
     2941 cgcatcgccg acaagggtgt ccactacgcc aacttccaca ccacaggggc gacgatcgca
     3001 tccccgggcg tggcactcag cgcggggatg gggcccgcgc tgcgtcgagc tggcggtcga
     3061 gggtgatcgc cgcgtcgatg agcgcgaggt gggtgaaggc ctgcgggaag ttgccgatct
     3121 gctcaccggt
//
LOCUS       DASYFY010000233         3620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_752957, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000233 DASYFY010000000
VERSION     DASYFY010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3620
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_752957"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VGN19_04565"
     CDS             complement(<1..394)
                     /locus_tag="VGN19_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HEV7195192.1"
                     /translation="MTTPPTLTVEQLRSDIESGVVDTVIVAFTDMQGRLQGKRIHGQF
                     FLDSVLGHGTEGCNYLLAVDVDMNTVDGYAISSWERGYGDMMFDLDLDTLRRTPGQPY
                     SATVQCDLSWLDGSGPVRPSPRSVLKAQV"
     gene            complement(418..1143)
                     /locus_tag="VGN19_04570"
     CDS             complement(418..1143)
                     /locus_tag="VGN19_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HEV7195193.1"
                     /translation="MNAVDRLTSLPDVVLRPASGNAFEATVEQLATAIRLGVFTDGEQ
                     LPPERELADRLGVSRNTLREAIAALRDSGLVQTRRGRGGGTAITYAGLEPGTANVPVR
                     TGAALADAMDFRRVVEPGAAALAATRTLAADQRAWLLDSARAAREAPDNAAHRLADSR
                     FHLAVATMCGSPMLIEAVTRAQAAVHELLSAIPVLRRNIEHSNDQHDAIVRAILAGDP
                     DAARAAMEEHCDATSALLRGLLG"
     gene            complement(1202..>3620)
                     /locus_tag="VGN19_04575"
     CDS             complement(1202..>3620)
                     /locus_tag="VGN19_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7195194.1"
                     /translation="VIGCSVAYHLAQLGWTDVVLLEQGSLSGGTTWHAAGLVGQLRAT
                     EASTRLVQYSTDLYSRLEAETGLGTGYRTCGGLTLARTPERMVQLRRTAASAAAYDLD
                     CELLTAEQARERYPLIQVDDVVGAIWLPGDGRADPADLTQALAKGARLRGVRIHERVR
                     VTDVLTSGGRASGVRTDQGDLECEVVVNCAGQWAKAVGDLVGVTVPLHSAEHFYVVTD
                     QIHGVHRDLPILRDPDGYTYVKEEVGGLLVGGFEPVAKPWVAPDQIPYPFEFALLEED
                     WEHFEILMDSAVHRIPVLAETGIRKFYNGPESFTPDNQFIIGEAPSVPGFFVCAGFNS
                     VGIASAGGAGRAMAEWIVEGGPTMDLITADLRRFSPLAGNTDWLRARVGEVLGLHYAL
                     PWPNRELETARPLRRSPVYDLLVAQGACLGSRNNWERANVFAPPGVPAVVEYSWDRPS
                     WVDWSVAEQRATRDAVAVFDQTSFSKYLVVGRGAEQALQWLCTADVAVPVGRAVYTGM
                     LNARGTYESDITVTRIGPQEFFVVSSAATTDRDVDWMRRHLPHGCDASVVDVTSMYAV
                     FGVMGPRSAELLSVLSRDGFDDASFPFGTSREVQLGHATVRATRITYVGELGWELYVP
                     CDLAVGVYEDLFSAGKGLGVVPAGYYAIEAMRLEKGYRAFGRELTTDYGPVEAGLLFA
                     CKLRTEVDFLGRAAVEAARGRPTGRRIVSFVLDDPCAYPWGGELVLRDGVPVGQVTSA
                     GWGAAIGSAVGLALIGDRASGTASPQWIRDGAYEIDVAGQRFSATVTLRGPFDGEGRK
                     LGRREKV"
BASE COUNT          560 a         1288 c         1248 g          524 t
ORIGIN      
        1 cgacctgggc cttcagcacc gacctgggcg agggccgaac cggtccactg ccgtccagcc
       61 aagacaggtc gcactggacg gtcgcggagt acggctgacc aggggtgcga cgcagggtgt
      121 ccaggtcgag gtcgaacatc atgtcgccgt agccacgctc ccaggagctg atggcatagc
      181 cgtcgacggt gttcatgtcc acgtcgaccg cgaggaggta gttgcacccc tccgtgccat
      241 ggcccagcac cgagtcgagg aagaactgcc cgtggatgcg cttgccctgc aggcggccct
      301 gcatgtcggt gaacgccacg atgaccgtgt cgacaacccc ggactcgatg tccgagcgga
      361 gctgctcaac ggtcagcgtc ggtggtgtgg tcatgctgcc tcctcgatct cggtccgtca
      421 gcccagtagt ccacggagca gtgcggacgt ggcgtcacag tgctcctcca tcgcggccct
      481 ggcggcgtct gggtcgcccg ccaggatggc ccgcacgatc gcgtcgtgct ggtcgttgga
      541 gtgctcgatg ttgcgccgca gcaccgggat cgcgctgagc agctcgtgga cggccgcctg
      601 cgccctggtc accgcctcga tgagcatcgg cgagccgcac atcgtcgcca ccgccaggtg
      661 gaaacggctg tcggccaggc ggtgggcggc gttgtcgggc gcctctcgcg cggcccgagc
      721 gctgtcgagc agccacgcgc gctggtccgc tgccagggtc cgtgtggcgg cgagcgccgc
      781 ggcgcccggc tcgaccaccc gccggaagtc catggcgtcc gcgagcgcgg caccggtcct
      841 caccgggacg ttcgccgtgc cgggctcgag ccccgcgtag gtgatcgcgg tgccgccacc
      901 gcgaccgcgt cgggtctgaa cgagtccgga gtcacgcagc gcggcgatgg cctcgcggag
      961 ggtgttgcgg ctgacgccga gccggtcggc gagctcccgc tccgggggta gctgctcgcc
     1021 atcggtgaag acgccgagcc ggatcgcggt cgccagctgc tcgacggtgg cctcgaacgc
     1081 attgcccgaa gcgggccgca gcaccacgtc gggcagagac gtcagacgat ccaccgcgtt
     1141 caccttccga tccaataccc ctcgatggtg cacgtcaatg gtctgggaaa gaaccattga
     1201 gctaaacctt ctctcgccga ccgagcttgc ggccctcgcc gtcgaacggc ccccgcagcg
     1261 tcacggtggc cgagaaccgt tgcccggcaa cgtcgatctc gtaggcgccg tccctgatcc
     1321 actgcggact cgcggtcccg ctggcgcggt cgccgatgag ggcgagcccg acggcagatc
     1381 cgatcgccgc tccccatccg gcactcgtga cctggccgac cggcacgccg tcgcgcagga
     1441 ccagctcgcc accccacgga taggcgcagg ggtcgtcgag gacgaacgag acgatgcggc
     1501 gcccggtggg ccggcccctg gccgcctcga cggctgccct gccgaggaag tcgacctcgg
     1561 tcctgagctt gcaggcgaac agcaagcccg cctcgaccgg gccgtagtcg gtggtcagct
     1621 cgcgaccgaa tgcgcggtag cccttctcca gacgcatggc ctcgatggcg tagtaccccg
     1681 ccgggaccac gccgaggcct ttccctgcac tgaagaggtc ctcgtagacg ccgacggcca
     1741 agtcgcaggg gacgtacagc tcccaaccca gctcgcccac atacgtgatc cgggtggcac
     1801 gcacggtcgc gtggccgagc tggacctccc gactggtccc gaacggaaag gacgcgtcgt
     1861 cgaagccgtc acgagacagc accgacagga gctcggcgga ccgtggcccc atgacgccga
     1921 acacggcata catgctggtc acgtcgacga cgctggcgtc gcacccgtgc gggaggtgtc
     1981 gccgcatcca gtcgacgtcc cggtccgtcg tcgccgcgct gctgacgacg aagaactcct
     2041 gcgggccgat cctggtgacg gtgatgtcgc tctcgtaggt cccgcgcgcg ttgagcatcc
     2101 cggtgtagac cgcgcgaccc accgggacgg cgacgtcggc ggtgcacagc cactgcaggg
     2161 cctgttcggc accccggccc acgacgaggt acttggagaa cgacgtctgg tcgaacacgg
     2221 cgaccgcgtc gcgggtggcg cgctgctcgg ccacagacca gtccacccat gaggggcggt
     2281 cccaggagta ctcgacgacc gccggaaccc ccggtggggc aaagacattc gcgcgctccc
     2341 agttgttgcg actgcccagg cacgcaccct gggccaccag taggtcgtac accggcgagc
     2401 gacgcagcgg ccgggctgtc tcgagctcgc ggttgggcca gggcagggcg tagtggagcc
     2461 ccagcacctc gccgaccctg gcccgcagcc agtcggtgtt gccggccagc ggcgagaagc
     2521 gacgcaggtc tgcagtgatg aggtccatcg tcggaccacc ctcgacgatc cactcggcca
     2581 tcgcccggcc cgctcccccc gccgacgcga tgcccacgga gttgaagccg gcgcagacga
     2641 agaagcccgg caccgagggc gcctcgccga tgatgaactg gttgtcggga gtgaagcttt
     2701 cgggaccgtt gtagaacttg cggatgccgg tctcggcgag gaccgggatc cggtgcacgg
     2761 cgctgtccat caggatctcg aagtgctccc agtcctcctc cagcagcgcg aactcgaacg
     2821 ggtacgggat ttggtccggg gcgacccacg gcttggccac tggctcgaag ccaccgacca
     2881 gcaggccacc gacctcctcc ttgacgtagg tgtagccgtc ggggtcgcgc aggatgggca
     2941 ggtcgcgatg caccccgtgg atctggtcgg tgaccacgta gaagtgctcg gcagagtgca
     3001 gcggaacggt cacgccgacc aggtccccca ccgccttggc ccattgcccg gcgcagttga
     3061 ccacgacctc acactcgagg tcgccctgat cggtcctgac cccgctcgct cgtcccccgg
     3121 aggtcaggac gtcggtgacc cggacccgtt cgtggatccg caccccgcgc aggcgcgcgc
     3181 ccttggccag ggcctgggtc aggtccgcgg gatcggcgcg accgtccccc ggaagccaga
     3241 tggcgcccac cacgtcatcg acctggatga gggggtagcg ctcacgtgcc tgctccgcgg
     3301 tgagcagctc gcagtcgagg tcgtacgccg cggcgctcgc cgcggtgcgc ctcagctgca
     3361 ccatgcgctc aggcgtcctg gcgagcgtca ggccgccgca ggtgcggtag ccggtgccca
     3421 ggcccgtctc cgcctcgagg cgggagtaga ggtccgtgga atactgcacc aggcgcgtgc
     3481 tcgcctcggt cgcccgcagc tggccgacca ggccggcggc atgccaggtg gtgcccccgg
     3541 acagcgaacc ctgttcgagg agaacgacat cggtccaccc cagctgggcc aggtggtacg
     3601 cgacgctgca gccgatgacg
//
LOCUS       DASYFY010000234         1632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_700380, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000234 DASYFY010000000
VERSION     DASYFY010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_700380"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VGN19_04580"
     CDS             <1..206
                     /locus_tag="VGN19_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195195.1"
                     /translation="AETVPGRTFGRWAMAKVAADGGPDIRLLSNAQRQTIVAAGADHH
                     VTPDQESVLSFMRDSVDHPVIPQ"
     gene            234..776
                     /locus_tag="VGN19_04585"
     CDS             234..776
                     /locus_tag="VGN19_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012244884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HEV7195196.1"
                     /translation="MATALVIVDFQNDFTPGGALGVPHGDELAPRINTLAASGAFDLV
                     LATRDWHPPDHGSFSAQGGEWPVHCVAGSEGAQLHPALDRDRLDIVLDKGQDPVTEGY
                     SAFDGTSLQTILRDRGIDAVTVCGLATDYCVKHTALDAVRAGFQVTVDGRAIAGVDVE
                     PGDSERALAELAEAGVAVQN"
     gene            809..1036
                     /locus_tag="VGN19_04590"
     CDS             809..1036
                     /locus_tag="VGN19_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018777454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEV7195197.1"
                     /translation="MEQPVEISGDMIRLGQLLKLSGAAQDGVHAKALIADGWVSVNGE
                     PELRRGRQLHAGDLVVVAGIEPAVAYRLRTR"
     gene            1075..1452
                     /locus_tag="VGN19_04595"
     CDS             1075..1452
                     /locus_tag="VGN19_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195198.1"
                     /translation="MESATEVVARFLSALDTEVREVAPGQWGMVLDAAGYVLDVGLVV
                     RGGLLRAQAAVLPPEVINPHQLLYWNRQSPLVSFAENMAGEVFVCGELPLESLEAETL
                     DRFLGLLLANATRAREFAITSTS"
     gene            1449..>1632
                     /locus_tag="VGN19_04600"
     CDS             1449..>1632
                     /locus_tag="VGN19_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEV7195199.1"
                     /translation="MTPVLEFRQRVPLRWRDMDMLGHLNQSVYHELLEEGRAGLISEL
                     IGRLGDARDGGAFVMAH"
BASE COUNT          233 a          546 c          583 g          270 t
ORIGIN      
        1 gggccgaaac cgtgccgggg cggaccttcg gtcggtgggc gatggccaag gtggcggccg
       61 acggtggccc ggacatccgc ctgctgagca acgcccaacg ccagacgatc gtcgccgccg
      121 gggctgatca tcacgtgacc cctgaccagg agtcggtgct gtcgttcatg cgtgactcgg
      181 tggatcaccc cgtcattccg cagtgaccat ctgagcctcg ccggaccggc gtcatggcca
      241 cggctctcgt catcgtcgac ttccagaacg acttcacccc cggcggggcg ctcggggtgc
      301 cgcatggcga tgagctcgca ccgcggatca acacgctcgc cgcgtcgggt gcatttgacc
      361 tggtgctcgc cacccgcgac tggcatccac ccgaccatgg ctcattttcc gcacagggcg
      421 gggagtggcc ggtgcactgc gtggcgggca gcgagggcgc gcagctccat ccagcactcg
      481 accgggatcg tctcgacatc gtgctcgaca agggccagga tcccgtcacc gagggctact
      541 cggcgtttga cggcacgtcg ctgcagacga tcctgcgtga ccgcggcatc gacgccgtga
      601 ccgtgtgcgg tctcgccacc gactactgcg tcaagcacac ggcacttgac gcggtacgcg
      661 ccggcttcca ggtcacggtg gacgggcgag ccatcgcagg ggtcgacgtt gagcccgggg
      721 actccgagcg cgcgctggcc gagctggccg aggccggggt cgcagtgcag aactgacgac
      781 gcccgcgggc ggctgcgaca ctccgtgcgt ggagcaaccc gtcgagatct ccggcgacat
      841 gatccggctc ggtcagctgc tcaagctgtc cggtgccgcg caggacgggg tccacgccaa
      901 ggcgctgatc gctgacggct gggtgtcggt caacggcgag ccggagctgc gccgcgggcg
      961 gcagctacat gccggtgacc tggtcgtggt cgccggtatc gagcccgccg tcgcctaccg
     1021 gctgaggacc aggtagcgca acccgcaaaa agcggtgcct tatcctgtgc ggccatggag
     1081 tccgccaccg aggtcgtcgc ccgcttcctg tcggcgctgg acaccgaggt gcgcgaggtc
     1141 gcgcccggcc agtggggcat ggtgctcgac gcggctggct acgtgctcga cgtaggtctc
     1201 gtggtccgag gtgggctgct gcgcgcgcag gcggcggtgc tgccccccga ggtgatcaat
     1261 ccccatcagc tcctctactg gaatcggcag tcgccgctgg tgtcgtttgc cgagaacatg
     1321 gctggcgagg tcttcgtgtg cggagagctc ccactggagt ccctggaggc tgagacgctc
     1381 gaccggttcc tcggtctgct gctggccaac gcgacgcggg cccgcgagtt cgccatcacc
     1441 tcgacgtcgt gacgccggtt ctggagtttc gccagcgcgt gcccctgcgg tggcgcgata
     1501 tggacatgct cggccacctc aaccagtcgg tctatcacga gctgttggag gaggggcgcg
     1561 cggggctgat cagcgagctg atcggtcgtc tcggggacgc gcgggacggc ggcgcgttcg
     1621 ttatggctca cg
//
LOCUS       DASYFY010000235         1537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1751344, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000235 DASYFY010000000
VERSION     DASYFY010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1751344"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..532)
                     /gene="crcB"
                     /locus_tag="VGN19_04605"
     CDS             complement(155..532)
                     /gene="crcB"
                     /locus_tag="VGN19_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEV7195200.1"
                     /translation="MTLLFVVIGGAVGAPLRYLTDLFVQSKHDTAFPWGTLTVNVVGS
                     AVLGGVLAAASVGHLSADLVALLGTGLCGALTTFSTFGFETVRLMQEGSAVAARLNVT
                     VSLAAGFLAGAGAWALTLALLGG"
     gene            complement(529..1020)
                     /gene="crcB"
                     /locus_tag="VGN19_04610"
     CDS             complement(529..1020)
                     /gene="crcB"
                     /locus_tag="VGN19_04610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEV7195201.1"
                     /translation="MPEDPPTDPRTVRPSTDRRLRVERQGPFRGRGDVLAMIALGGAL
                     GSTARYAVGLLLPHAPDRIPWSTVTANLTGAFLLGVLMVFVNDVWPPNRYLRPLLGVG
                     VLGGYTTFSTYMLDAHALAAAGALGALAAYVLVTLVGGLIAVRLGAAFGRLLTRPRGR
                     ETA"
     gene            1328..>1537
                     /locus_tag="VGN19_04615"
     CDS             1328..>1537
                     /locus_tag="VGN19_04615"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEV7195202.1"
                     /translation="MGAGGPRYLWLMPLVVAGMLLVALVFGELGSHYPLAGALYQYGK
                     YSVGSAYGWWVGWIYGIALLVTVASV"
BASE COUNT          242 a          536 c          556 g          203 t
ORIGIN      
        1 ccagcgaatg cacgacttcg tggcgcagtc cctgtcgatg cagctggccc accgccagca
       61 ccgccccgtg atcgtcgtgc cgttgaccgt cgtcgactgg cacgcacccg cgccgtggga
      121 gtgaccccgc gaccggtgcg aaccggcgga tgcctcagcc gccgagcagc gcgagggtga
      181 gcgcccacgc cccggcgccg gcgaggaagc ccgcagccag gctgacggtc acgttgagcc
      241 tcgccgccac ggcggaaccc tcctgcatca ggcgtacggt ctcgaacccg aacgtcgaga
      301 aggtcgtcag cgcgccgcac aacccggtcc ccagcagggc gacgagatcg gcggacaggt
      361 gcccgaccga cgcagcggcc aggacccctc cgaggacagc ggaaccgacg acgttgaccg
      421 tcagggtgcc ccacgggaag gcggtgtcgt gcttcgactg cacgaacagg tccgtgaggt
      481 agcgcagggg cgcgccgacc gcgccgccga tgaccacgaa gagcaacgtc atgccgtctc
      541 cctgccacgc ggtcgcgtca ggaggcgacc gaaggctgcg ccgagccgta ccgcgatcag
      601 gccgccgacc agggtcacca gaacgtaggc ggcgagggct ccgagcgcgc cggccgcggc
      661 gagggcgtgg gcgtcgagca tgtacgtcga gaaggtcgtg tagccgccca ggacgccgac
      721 gcccagcagc gggcgcaggt atcggttcgg aggccagacg tcattgacga agaccatcag
      781 gacgccgagc aggaaggccc cggtgaggtt cgcggtgacc gtcgaccagg ggatgcggtc
      841 cggcgcgtgc ggcaagagca ggcccacggc ataccgggcg gtgctcccga gcgcccctcc
      901 gagggcgatc atcgcaagga cgtctccgcg tccccggaac ggaccttggc gctcgacgcg
      961 cagccggcgg tccgtggatg ggcgcacggt gcgcgggtcc gtgggcgggt cctcgggcat
     1021 ggctctccta cctgtctcag gtagggactg ttggcgacgg ggatgtcgcg gttgtcggcg
     1081 agccccaccg ccatcgacga ccacgatacc gactcgagga ctggcggcca cctgggggcc
     1141 ctgctcttgg acgcccacct ccaggcctgg gtcgcgctga ccccggcgac gggcacggcc
     1201 tcagggcaag cactctcgcg cggctcaggg atccacggaa atgcctgagc ggcagggctc
     1261 ttggggggat tctgagaccc aggggtacac gcagccttca ggatgacgac atggccagcc
     1321 cctcgacgtg ggcgccggcg gcccgcgcta tctctggctg atgccgctcg tcgtggccgg
     1381 gatgctcctc gtggcactcg tcttcggtga gctgggcagc cactacccgc tcgccggcgc
     1441 gctctaccag tacggcaagt actcggtcgg ctcggcgtac gggtggtggg tcggctggat
     1501 ctacggcatc gcactgctcg tcaccgtcgc gagcgtc
//
LOCUS       DASYFY010000236         3770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_595822, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000236 DASYFY010000000
VERSION     DASYFY010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595822"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..1972
                     /locus_tag="VGN19_04620"
     CDS             50..1972
                     /locus_tag="VGN19_04620"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7195203.1"
                     /translation="MSSTASLKIAVVGPTHPYKGGVASHTTMLAHELAETGHDVTLVS
                     WSHLYPSKLYPGEQAVPGGAADVPPFPRTVRALSWARPDTWIRTGRRLRGFDVIVVIH
                     VIPAVVPAHLVLLRAAGPSRRVRSGATSSSRGPRSVVIAHNVLPHETHPGDRELMERL
                     FQRVDGVLVHSDSQAKLAYELHAPRVSVTDLPPHLPGGMPVEHDGYDGPPRLLALGIV
                     RDYKGVDLLMEALAEVPGPTLTVAGEMWGSSGDRVKELAQDPRLRDRVEVHGGYVPAD
                     RLAPLLASHDVLALTYRSATASQNVMLGQQHGLPVLASDVGTFGSQVRDGVDGLLVPP
                     SDKAALVAALRRLAQPGYAALLRSAVRPPDLSGPWARYVGAIEALGAVEPAAEPTVDG
                     TDDDDPQVHEGVVGHLRHRLGASVRAVVAASRPEVTVGRQDLPDWVRASDVLADGDEA
                     DEAKAFARTLGLPRVGDSVAAWAALGTLAAIVRVRDDGRRSAVIVDESGARSPLSRWA
                     RAIGFEPVELELTGRRSSVEVLDVDTASLDVIVRLHPGGCDADDIDEAMSQASWALKS
                     GGLLCVTLPIGGSRAEGALGPADVRGVLARAHDLGFVLVGDLDGDITGRMRQASDTST
                     RPDAAYGLLRLTLRRR"
     gene            1972..2970
                     /locus_tag="VGN19_04625"
     CDS             1972..2970
                     /locus_tag="VGN19_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEV7195204.1"
                     /translation="MTRSRVLSVLRIALALLVVAGVALAVGRNWAQVSRDISHVKLGD
                     LVLAAGLVALAPILTMLGWRRLLTDLGSTLHLAPAGGVFFVGQLGKYLPGSVWSIVAQ
                     AEMALRLHVPRRRSTVVGLISIGLAVVCGLIMGLPAVPPLLSHSSSASTGWVLVLAVP
                     LLAVVLWPRLLNWGIGLGLRLLRREPLEHQLSGRAVFLACVYFLGAWLVSGLAVLVLA
                     RAVSDRPVDTSRLLVATVAGFALASSVSMFAVILPAGVGLREGILVLLLAPLISTSGA
                     AAVVVLARFLTVLADVLFALLGWAWARSHHLITAKAERERLVEDRVVEDVPPAAGR"
     gene            2981..>3770
                     /locus_tag="VGN19_04630"
     CDS             2981..>3770
                     /locus_tag="VGN19_04630"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195205.1"
                     /translation="MPNRDETDPNPQVAAPPGGPLLAVAKRGAEHLLWARVALQRRAE
                     AWRGYGSSRPAPTVVPATAVLRTEAMWRAAVEQAARLRLPQHRDLPKNWDALGAVAAV
                     LTLADDGSRQARVMDAGSARYSPVLPWLRLYGLGSTPGSLLGINLEFGAEVHRDGVVF
                     RHGDVTATELPDGSLDAVTCMSVIEHGVPLEPFLRESARILRPGGILCVSTDYDQDPP
                     DTTGRTAYGSSVHIFGPEEIRDLLVTAQSCGLELVGDLSTSDSLS"
BASE COUNT          445 a         1339 c         1379 g          607 t
ORIGIN      
        1 gcgcccgagc gtctgagcgg cacagggtcc accacgtgag cagcccagcg tgagtagcac
       61 agcctcgctg aagatcgcgg tcgtcggccc gacgcacccg tacaaggggg gcgtcgcctc
      121 gcacaccacg atgctcgcgc atgagctcgc ggagaccggc catgacgtga ccctcgtgtc
      181 gtggtctcac ctgtacccct cgaagctcta tcccggcgag caggccgtac ccggtggcgc
      241 cgctgacgtc ccgccgttcc cgcgcacggt tcgggcgctc agctgggccc ggcccgacac
      301 ctggatccgc acggggcgcc ggctgcgtgg tttcgacgtc atcgtcgtga tccacgtcat
      361 ccccgcggtc gtgcccgcgc acctcgtgct gctgcgggcg gccggcccgt cgcgtcgcgt
      421 tcgctccggg gcgaccagct cgtcgcgtgg gccgcggtcg gtcgtcatcg cccacaacgt
      481 cctgccgcac gagactcacc ccggcgaccg cgagctgatg gagcggctct tccagcgggt
      541 cgacggcgtc ctcgtgcaca gcgactccca agccaagctg gcctatgagc tgcacgcacc
      601 gcgggtgtcg gtcaccgacc tgcctccgca cctgcccggg ggcatgccgg tcgaacacga
      661 cgggtacgac gggccgccca ggctgctcgc gctcgggatc gtgcgcgact acaagggcgt
      721 cgacctgctc atggaggcgc tcgccgaggt ccccggcccg acgctgacgg tggccgggga
      781 gatgtggggc tcgagcgggg accgggtcaa ggagctcgcc caggaccccc ggctccgcga
      841 ccgggtcgag gtgcacggtg gctatgtccc ggccgatcgg ctggcgcccc tgctcgcctc
      901 ccatgacgtg ctggccctga cctaccgcag tgccacggcc tcgcagaacg tcatgctggg
      961 ccaacagcac ggcctgcccg tgctggcctc cgatgtgggc accttcggca gccaggtccg
     1021 tgacggggtg gatggcctgc tcgtgccccc gagtgacaag gcggcgctgg tggcggccct
     1081 gcgcagactg gcccaaccgg ggtatgccgc gctgctacgt tccgcggtgc gtccacccga
     1141 cctgtcggga ccgtgggcgc gctacgtcgg cgccatcgag gccctgggtg ccgtggagcc
     1201 ggcggcggaa ccgaccgtcg acgggaccga cgacgatgac ccccaggtcc acgagggagt
     1261 ggtcggtcac ctccggcatc gcctcggcgc ctcggtccgc gccgtggtgg cggcgtctcg
     1321 acccgaggtc acggtggggc gacaggatct gccggactgg gttcgcgcct cggatgtgct
     1381 ggccgacggc gacgaggccg acgaggccaa ggcctttgcc cgcaccctgg gcctgcccag
     1441 ggtgggcgac agcgtcgctg cctgggctgc gctgggcacg ctggcagcga tcgtgcgggt
     1501 ccgcgacgac ggccgtcgaa gcgcggtcat cgtcgacgag tcaggtgccc gttcgccgtt
     1561 gtcccgctgg gcgcgagcga tcgggttcga gcctgtcgag ctcgagctca ccggacggcg
     1621 ctcctccgtc gaggtcctcg acgtcgacac cgcgtcgctc gacgtgatcg tgcggctgca
     1681 cccaggtggg tgcgacgccg acgacatcga cgaggcgatg agccaggctt cctgggccct
     1741 gaagtcgggc ggcctgctgt gcgtgaccct gcccatcggc gggtcgcgcg ccgagggtgc
     1801 actcgggccc gcggacgtcc gaggggtgct ggctcgggct cacgacctag gcttcgtcct
     1861 ggtgggcgac ctcgacggcg acatcaccgg ccgcatgcgg caggcctccg atacctccac
     1921 ccgcccggac gcggcatacg gcctgctccg cctgactctg aggaggcgct gatgacgcgg
     1981 tcccgcgtcc tgagtgtcct acgcatcgcg ctcgcgctcc tggtggtcgc cggggtcgcg
     2041 ctcgcggtgg gccgcaactg ggcgcaggtg tcccgcgaca tcagtcacgt caagctgggt
     2101 gacctggtgc tcgctgccgg actggtcgcc ctggcgccga tcttgaccat gctggggtgg
     2161 cggcgtttgc tgaccgacct tggctccacg ctgcacctcg ccccggcggg cggcgtcttc
     2221 ttcgtgggcc agctcggcaa gtacctgccg gggtcggtgt ggtccatcgt ggcgcaggcg
     2281 gagatggccc tgcggctgca cgtcccgcgg cgcaggtcga cggtcgtggg gctgatcagc
     2341 atcgggcttg ccgtggtgtg cggcctgatc atgggacttc cggcggtgcc gcccctgctg
     2401 tctcacagca gcagcgcctc gacgggctgg gtgttggtgc tggccgtccc gctgctcgcg
     2461 gtggtcctgt ggccgcggtt gttgaactgg gggatcggcc tggggctgcg actgctcagg
     2521 cgggagccgc tggagcacca gctctcgggg cgggcggtgt tcctggcgtg tgtgtacttc
     2581 ctcggcgcat ggctggtgtc cggcctggcc gtgctggtgt tggcgcgagc ggtttccgac
     2641 cggcccgtgg atacgtcccg gctcctggtg gctacggtgg ccggctttgc cctcgcctcg
     2701 tccgtgtcga tgttcgccgt gatcctgccg gcaggcgtcg gcctgcgtga gggaatcctg
     2761 gtcctgctgc tcgccccgct catctcgacg tcgggcgcgg ccgcggtggt cgtcctggcc
     2821 cgcttcctca ccgtgctggc cgacgtcctc ttcgcgttgc tgggctgggc ctgggcccgc
     2881 tcacaccacc tgatcacggc caaggcagag cgggagaggc tggtcgagga ccgagtcgtt
     2941 gaggacgtcc cgccagccgc gggccgctag attgcccccc atgcccaacc gtgacgagac
     3001 cgaccccaac ccccaggtcg ccgcgccccc cggcggcccc ctgctggcgg tggccaagcg
     3061 cggagccgag catctgctgt gggccagggt ggccctgcag cgacgggccg aggcgtggcg
     3121 cggctatggg agctcccgac ccgctccgac cgtggtgccg gcgaccgccg ttctgcgcac
     3181 cgaggcaatg tggcgcgcgg ccgtggagca ggcggcgcgg ctgcggctac cgcagcaccg
     3241 cgacctgccc aagaactggg atgccctcgg ggctgtcgca gcggtgctga ccctggccga
     3301 cgacggtagc cgccaggccc gggtcatgga cgccggcagc gcgcgctact ccccggtgct
     3361 gccctggcta cggctctacg gactcggttc gacgccagga tccttgttgg ggatcaacct
     3421 ggagttcggt gcggaggtgc atcgggacgg ggtggtcttc cggcacgggg acgtgacggc
     3481 gaccgaactg cccgacggct ccctcgacgc cgtgacgtgc atgtcggtga tcgagcacgg
     3541 ggtgccgctc gagccgttcc ttcgggagag cgcccgcatc ctgcggcccg gagggatcct
     3601 gtgtgtctcc acggactacg accaggaccc gccggacacc accggccgga cggcatacgg
     3661 cagctcggtg cacatcttcg gtccggagga gatccgggac ctgctcgtga cggcgcagtc
     3721 ctgcgggctg gagctggtcg gcgacctgtc cacctcggac tcgctctccc
//
LOCUS       DASYFY010000237         4606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_910875, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000237 DASYFY010000000
VERSION     DASYFY010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4606
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_910875"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..1443
                     /locus_tag="VGN19_04635"
     CDS             157..1443
                     /locus_tag="VGN19_04635"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006206 - pyrimidine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HEV7195206.1"
                     /translation="MSGFAAVDVIIAKRDGRELSGEQIDWVIDAYTRGVVADEQMSSL
                     AMAILLNGMNRREISRWTAAMINSGERMDFSALSRPTSDKHSTGGVGDKITLPLAPLV
                     AACGVAVPQLSGRGLGHTGGTLDKLESIPGWRATMTNEQMLAQLEDVGAVICAAGDGL
                     APADKKLYALRDVTGTVEAIPLIASSIMSKKIAEGTGALVLDVKVGSGAFMKTVEDAR
                     ELARTMVDLGTDAGVTTVALLTNMQVPLGLTAGNALEVRESVEVLAGGGPEDVVELTL
                     VLAREMLAAAGRDDVDPADALRDGRAMDTWKAMIRAQGGDPDAELPIAKETHEILVPA
                     DGVLTQLDALKVGVAAWRLGAGRARKEDPVQAGAGVQLHAKPGATVRGGDRLLTLHTD
                     TPERFERAIAALEGAYTIAPEGSRPDLMPLVIEKIS"
     gene            1453..1830
                     /locus_tag="VGN19_04640"
     CDS             1453..1830
                     /locus_tag="VGN19_04640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin"
                     /protein_id="HEV7195207.1"
                     /translation="MPELIPTPTTIPVPGGKIIDEHVGRVNTGTEAVSVAHMKAPGDW
                     TEPFQTPAFDEVTLVLAGSVLVDHDGGQLRVQAGQSVITRAGERIRYSTGAEGAEYVA
                     VCLPAFSPDTVHREDEAESEGEA"
     gene            1881..3008
                     /locus_tag="VGN19_04645"
     CDS             1881..3008
                     /locus_tag="VGN19_04645"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004000 - adenosine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009168 - purine ribonucleoside
                     monophosphate biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEV7195208.1"
                     /translation="MPADPIVRAPKALLHDHLDGGLRPQTIIEIADQIGYAGLPATDA
                     ASLGAWFRESADSGSLVRYLETFDHTIAVMQTTEGLRRVARESVLDLAADGVVYAESR
                     YAPEQHLEGGLELEDVVEAVNAGFREGEAEAAEAGTPIRVTALLTAMRHAAKSTEIAE
                     LAVRYRDRGVAGFDIAGAEAGFPPTRHLDAFEYLRRENAHFTIHAGEAFGLPSIWEAI
                     QWCGADRLGHGVRIVDDLVVRGKLFGDDVTAAMTADPDEIVLGRLAAYVRDTRIPLEM
                     CPSSNVQTGAAASVGLHPISLLKRLRFRVTVNTDNRLMSGTSMSREMQLLVDEAGWAL
                     DDLRWVTINAMKSAFIPFDERLAIIEGIVKPGYQALATTAS"
     gene            complement(3037..3852)
                     /locus_tag="VGN19_04650"
     CDS             complement(3037..3852)
                     /locus_tag="VGN19_04650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEV7195209.1"
                     /translation="MSSSTVGVGADDLVTGEAVALDLPRAGVGLRMLSGAIDIVVGYS
                     VFIALQLLATLLVGGTDDALTVAIITVGTIAAMVGLPTTMETLTRGKTLGHLALGLRT
                     VRDDAGPISFRQALTRALVGVVELYLCYGVPALFCAIISTKGKRFGDLLAGTYVVRDR
                     QRIALPQPPSMPPHLAGWATAADLAPLPDQLAVAVRQFLARVETFTPAVRDQLGQRLL
                     DEALPYVSPAPPPGNHPVYVLSAMLAERRVRDAARLEREATLRSRLLPSEHPG"
     gene            3894..>4606
                     /locus_tag="VGN19_04655"
     CDS             3894..>4606
                     /locus_tag="VGN19_04655"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HEV7195210.1"
                     /translation="MDLDAFVAAHRGDWDRLDALTKQRRLSGAEADEILDRYQRVATH
                     LSMIRSTAPDASLVSYLSILLARARSRSAGTRTVAWSDLGRFFAVSFPAALYRLRWWW
                     LGALVVDLLVAFVVGWWLLDHPSVESSFASPEQIRALVNNDFAHYYSQYAATSFALKV
                     WTNNLWVAALCIAVGVFCLPVVLMLYMNMLNLAVVGSIMIRHGRGAVFFGLILPHGLL
                     ELTCVFVAAGVGLRLFWTWV"
BASE COUNT          721 a         1542 c         1642 g          701 t
ORIGIN      
        1 tgccgtgcgg ccggtgccgt caggtgatct acgagttcgg cgggcagaac ctgctggtgg
       61 acaccccgac cgggccggag accatgacct gggtgctgcc ggcggcgttc gggccagagc
      121 acctgccgcc tgtatgagcg ccttcgcgag gtggacatga gcggcttcgc cgcagtggac
      181 gtgatcatcg ccaagcgtga tgggcgggag ctcagcggcg agcagatcga ctgggtgatc
      241 gacgcctaca cccgcggcgt ggtcgccgac gagcagatgt cgagcctggc catggccatc
      301 ctcctgaacg gcatgaaccg tcgcgagatc tcgcgctgga ccgccgccat gatcaacagt
      361 ggcgagcgga tggacttctc cgcgctgtcc aggcccacct ccgacaagca ctccaccggg
      421 ggagtcggcg acaagatcac cctgccgctg gcccccctcg tcgcggcctg tggcgtcgca
      481 gtcccgcagc tctcgggtcg cgggctcggc cacaccggag gcaccctcga caagctcgag
      541 tccattccgg gctggcgggc gacgatgacc aacgagcaga tgctcgccca gctcgaggac
      601 gtgggcgccg tgatctgcgc ggcaggcgac ggcctggccc cggcggacaa gaagctgtac
      661 gccctgcgtg acgtgaccgg cacggtcgag gccatcccgc ttatcgcgtc gtcgatcatg
      721 agcaaaaaga tcgcggaggg caccggggca ctcgtccttg atgtcaaggt gggcagcggt
      781 gccttcatga agaccgtcga ggacgcccgt gagctggccc gcaccatggt cgacctcggc
      841 accgatgccg gagtgaccac cgtcgcgctg ttgaccaaca tgcaggttcc gctcgggctg
      901 accgcgggca atgctctcga ggtgcgcgag tccgtcgagg tgctggcagg tggcgggccc
      961 gaggatgtcg tggagctgac cctggtgctg gcccgcgaga tgctggccgc agcgggccgg
     1021 gacgacgtcg accccgctga cgccctgcgc gatgggcggg ccatggacac ctggaaggcg
     1081 atgatccggg cccagggcgg cgaccccgac gccgagctgc ccatagccaa ggagacccac
     1141 gagatcctcg tcccggccga tggtgtcctg acccagctcg acgccctcaa ggtgggggtg
     1201 gcggcctggc ggctgggtgc tggtcgcgcg cgcaaggagg acccggtcca ggccggggcc
     1261 ggggtgcagc tgcatgccaa gcccggcgcc acggtgcgtg gcggcgatcg gctgctcacg
     1321 ttgcataccg atactccaga gcgcttcgag cgcgccatcg cggccctcga gggggcgtac
     1381 accatcgccc ccgagggctc ccgtccagac ctgatgccac tagtcatcga gaagatctcc
     1441 taaggtgaag acgtgcctga gctgatcccc acgcccacga ccatccccgt ccccggcggg
     1501 aagatcatcg acgagcatgt cgggagggtg aacaccggca ccgaagccgt ctccgtcgcg
     1561 cacatgaagg cgcccggaga ctggacggaa ccgttccaga cgcccgcgtt cgacgaggtc
     1621 acgctcgtcc ttgccggttc agtgctggtc gatcatgacg gcggacagct tcgcgtccaa
     1681 gcggggcaga gcgtgatcac gcgcgccggt gagcggatcc ggtactccac cggagccgag
     1741 ggtgccgagt acgtggccgt ctgcctgccc gccttctcgc ccgacacggt gcatcgagag
     1801 gacgaggcgg agtcggaggg cgaggcgtga tcttcggccg caagggcgac gccgaggttc
     1861 cggccgaggg gccgacagct ctgcccgccg acccgatcgt gcgcgccccc aaggcgctgc
     1921 tgcacgacca cctggacggg ggcctacgcc cgcagaccat catcgagatc gccgaccaga
     1981 tcgggtatgc cgggctgccc gccacagacg cagcgagcct gggtgcctgg ttccgcgaga
     2041 gcgctgactc cggatcgctg gtccgttatc tagagacctt cgaccacacg atcgccgtca
     2101 tgcagaccac cgaaggactg cgacgggtgg cccgggagag cgtgctcgac ctcgcggccg
     2161 acggggtcgt ctatgcggag agcagatacg cgcctgagca gcacctcgag ggtggcctcg
     2221 agctcgaaga cgtcgtcgag gcggtcaacg ccgggttccg cgagggggag gccgaggccg
     2281 ccgaagccgg cacccccatc cgcgtcaccg ccctgctgac cgcgatgcgg cacgctgcaa
     2341 agagcaccga gatcgccgag ctcgcggtgc gctaccgcga ccggggcgtc gcggggttcg
     2401 acatcgccgg ggccgaggcg gggttccctc ccacccgcca cctcgacgcc ttcgagtacc
     2461 tgcgccgcga gaacgcccac ttcacgatcc acgccggtga ggcgttcgga ctgcccagca
     2521 tctgggaggc catccagtgg tgtggcgcgg accgcctcgg tcacggcgta cgcatcgtcg
     2581 acgacctggt ggtgcgcggc aagctcttcg gcgacgacgt cacggccgcg atgaccgcgg
     2641 acccggacga gatcgtgctg ggaaggctcg ccgcctacgt gcgggacacc cggatccctc
     2701 tggagatgtg cccgagcagc aacgtgcaga cgggcgcggc ggcgtcggtg ggactgcacc
     2761 ccatctcgct gctcaagcgg ctgcggttcc gggtcacggt caacacggac aaccggctca
     2821 tgagcgggac gtcgatgtcc cgcgagatgc agctgctcgt cgacgaggcg gggtgggccc
     2881 tggatgacct gcgctgggtg accatcaacg ccatgaagtc cgcgttcatc ccgttcgacg
     2941 agcggctcgc gatcatcgag ggaatcgtca agccgggcta ccaggcgttg gcgaccacgg
     3001 cgagctgacg atccagctga cgatctagct gacgatctac cctgggtgct cgctcggcaa
     3061 cagcctggag cgcagggtcg cctcgcgctc caagcgggcg gcatcacgaa cccgtcgctc
     3121 ggccagcatg gcgctcagca cgtagaccgg gtggttacct ggaggtggcg cgggggagac
     3181 gtagggaagg gcttcgtcca gcagccgttg cccgagctgg tcgcggacgg caggcgtgaa
     3241 ggtctcgacc cgggcgagga actggcgcac cgcgaccgcg agctggtcgg gcagcggcgc
     3301 gagatcagcg gcggtcgccc acccggccag atggggcggc atggagggtg gctggggcag
     3361 ggcgatccgc tgccggtcgc ggaccacata cgtgccggcc agcaggtcgc cgaaacgctt
     3421 gcccttggtg gagatgatcg cgcagaacag ggcgggcacg ccgtagcaga gatagagctc
     3481 gacaacaccg accagagcgc gggtgagcgc ctgccggaag ctgatcgggc cggcgtcatc
     3541 gcgaaccgtc cgcagtccga gcgccaggtg acccagggtc ttgccacggg tcagggtctc
     3601 catcgtcgtc gggagtccca ccatggcggc gatggtcccg accgtgatga tcgcgacggt
     3661 caaggcgtcg tcggtcccgc ccaccagcag ggtcgccagg agctgcaagg cgatgaagac
     3721 ggagtatccg accacgatgt cgatcgctcc ggagagcatg cgcagcccga cgcccgcgcg
     3781 gggaagatcc agcgcgaccg cctcgccagt gacgaggtcg tcggcaccga cccccacggt
     3841 gctgctgctc atgtcggtca ccctagcgac gtcgcgaggc tagggtggcc gatgtggact
     3901 tggacgcctt cgtggccgcc catcgggggg actgggatcg gctcgacgcg ctcaccaagc
     3961 agcgtcggct gtcgggcgcc gaggccgacg agatcctcga ccgctaccag cgggtggcga
     4021 cccacctgtc catgatccgc tccaccgcgc cggatgcgtc gttggtcagc tacctgtcca
     4081 tcctgttggc tcgggctcgc tccaggtcgg ctggcaccag gaccgtggcg tggtccgacc
     4141 tggggcggtt cttcgcggtg tccttcccgg ccgcgctgta ccggctgcgg tggtggtggc
     4201 tgggcgcgtt ggttgtcgac ctgctggtgg ccttcgtggt cggctggtgg ctgctcgacc
     4261 acccgtcggt ggagagctcg ttcgcctcgc ctgagcagat ccgcgccttg gtgaacaacg
     4321 acttcgcgca ctactacagc cagtatgccg cgacgtcctt cgcgctgaag gtgtggacga
     4381 acaacctctg ggttgcggct ctgtgcatcg ctgtcggggt cttctgcctc cccgtcgtgc
     4441 tgatgctcta catgaacatg ctcaacctcg cggtggtcgg gtcgatcatg atccgccacg
     4501 ggcggggcgc ggtgttcttc ggcctcatcc tgccgcacgg gctactcgag ctcacctgcg
     4561 tgttcgtggc ggcgggcgtg ggcctgcggt tgttctggac ctgggt
//
LOCUS       DASYFY010000238         2463 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_753310, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000238 DASYFY010000000
VERSION     DASYFY010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753310"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VGN19_04660"
     CDS             <1..703
                     /locus_tag="VGN19_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7195211.1"
                     /translation="LGIAQKLVAEGARVVVTARKPEALAEAVERLGGAAHALGIAGNA
                     ADEAHQDEVIQAARDTFGGLDYLVNNTGINPVYGPMLDTPLDTARKIMEVNVLSAFSW
                     TQKAVTTGLGSAQAPGAIVNVASIAGLGATGSIGWYAVSKAALIHLTVELAYQLGPAV
                     RVNAVAPAIVKTQFAQALYEGREEKVAAAYPMKRLGAPEDIAGAVSCLRSPDAGWVTG
                     QTLVVDGGVTLGGGL"
     gene            700..1491
                     /locus_tag="VGN19_04665"
     CDS             700..1491
                     /locus_tag="VGN19_04665"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019159816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7195212.1"
                     /translation="MTIDLTGRGVVVTGAGRGIGAAYAKAFIARGARVVVNDLDPATA
                     QATADELGAIAIPGDASSEAGVAALVSDARAQLGAIDVFCANAGVARGGTEAVGERAW
                     EVSWNVNVMAHVRAAKLLVPDWLSRGGGTFVTTASAAGLLSIPGAAPYAVTKHAAVAF
                     AEWLSMTYGDRGVRVHAVCPQGVRTDMLWNSGAAGRALMEPSAVEPDDVAQDLLAAME
                     EGRFLVLPHPEVAQMYAGRAADPDRWLAGMRKMAAALPAVTMGTD"
     gene            1506..>2463
                     /locus_tag="VGN19_04670"
     CDS             1506..>2463
                     /locus_tag="VGN19_04670"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009760554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003960 - NADPH:quinone reductase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase family protein"
                     /protein_id="HEV7195213.1"
                     /translation="MLAWQVAELGEPGEVLTLTEVPEPVVTPGHVRVRVRATALNFPD
                     VLMVRGLYQVRPELPFVPGVEVCGEVVEVGSDVSGLAVGDRVVGTTAVPDGGLAQQCL
                     MPARGTFQAPASLADAAASALTIGYQTAYVGLVRRAALAAGETLVVHAAAGGVGSAAV
                     QVGKALGARVVAVVGSEAKAVAAHDAGADVVVDRSRDDFVSALKEAVGAGGADVVFDP
                     VGGGAYDASTKVVAFEGRIVVVGFTSGQIPTPGLNHALVKNYSILGLHWGLYLQRDHS
                     VATEAHAQLTRWAEAGVIKPVVSQQVPFGEAPSALRRLGAGES"
BASE COUNT          344 a          814 c          918 g          387 t
ORIGIN      
        1 cctcggcatc gcccagaagc tcgtcgcaga gggcgcacgg gtggttgtca ccgcccgcaa
       61 gccggaggcg ctggccgagg cggtcgagcg tctcggtggg gccgcacacg cgctcggcat
      121 cgccgggaac gccgcggacg aggctcacca ggacgaggtc atccaggctg ctcgggacac
      181 cttcggtggg ctggactacc tggtcaacaa caccgggatc aaccccgtct acggaccgat
      241 gctcgacacc ccgctggaca ccgcccgcaa gatcatggag gtcaacgtcc tctccgcgtt
      301 ctcgtggacc cagaaggccg tgaccactgg gctggggtcg gcgcaggcgc cgggcgcgat
      361 cgtcaacgtc gcctccatcg ccggactggg tgccaccgga agcatcggct ggtatgccgt
      421 gagcaaggcc gctctgatcc acctcaccgt cgagctggcc taccagctcg gcccggcggt
      481 gcgggtcaac gccgtggccc cggccatcgt caagacgcag ttcgcccagg cgttgtacga
      541 aggccgtgag gagaaggtcg ccgcggccta cccgatgaag cggctgggcg cgcctgagga
      601 catcgctggt gcggtgtcgt gcctgcggtc tccggatgcc gggtgggtca ccggacagac
      661 cctcgtggtc gacggtggcg tgacgctggg tggcggtctg tgaccatcga cctgaccggt
      721 cgcggcgtgg tggtgaccgg agccggccga ggcatcggcg cggcatacgc gaaggccttc
      781 attgcccgag gggcgcgggt ggtcgtcaac gacctcgacc cggccacggc tcaggcgacc
      841 gccgatgagc tcggcgcgat cgcgatccca ggagacgcgt ccagcgaagc cggggtggcc
      901 gccctggtca gcgacgcacg agcgcagctc ggagccatcg acgtgttctg cgccaacgcc
      961 ggggtggcgc gtggcggcac cgaggctgtc ggcgaaaggg cgtgggaggt gtcgtggaac
     1021 gtcaacgtca tggctcacgt ccgtgccgcc aagctgctgg tacccgactg gctgagtcga
     1081 ggcggcggca ccttcgtcac cacggcgtcc gcggccggcc tgctctcgat ccctggtgcc
     1141 gcgccctacg ccgtgaccaa gcacgcggcg gtggccttcg ccgagtggct ctcgatgacc
     1201 tacggagaca ggggagttcg cgtccacgcg gtctgcccgc agggtgtgcg gaccgacatg
     1261 ctgtggaact ctggcgcggc cggacgcgcc ctgatggagc cctccgccgt cgagcccgac
     1321 gacgtggccc aggaccttct ggcggcgatg gaggaggggc gattcctcgt cctgccccac
     1381 cctgaggtcg ctcagatgta tgccggtcgc gcggcggatc cggaccgctg gcttgccgga
     1441 atgcgcaaga tggccgcggc cctgccggcc gtcaccatgg gcaccgactg aggcgggagc
     1501 tcgacatgtt ggcatggcag gtcgcggagc tgggtgagcc tggcgaggtc ctcaccctca
     1561 cggaggtgcc cgagcccgtt gtcacgcccg gccatgtccg ggtgcgggtg cgcgcgaccg
     1621 cactcaactt ccccgatgtc ctcatggtgc gtggcctcta tcaggtgcgt cccgagcttc
     1681 ccttcgtccc cggcgttgag gtgtgcggcg aggtggtcga ggtcggatcc gacgtctcgg
     1741 gcctggccgt cggtgaccgg gtcgtcggca ccaccgcggt tccggatggc ggcctcgcgc
     1801 agcagtgcct gatgccggct cggggcacgt tccaggctcc ggcatccctg gccgacgctg
     1861 cggcgagcgc gctcaccatc ggctaccaga cggcatacgt cgggctggtg agacgggcgg
     1921 cgctggcggc gggagagacg ttggtcgtgc atgctgccgc gggtggcgtg gggagtgctg
     1981 cggtgcaggt agggaaggcc ctcggcgcca gggtcgtcgc ggtggtggga agcgaggcca
     2041 aggctgtcgc ggctcatgac gccggcgccg acgtcgtggt cgaccgttcg cgagatgact
     2101 tcgtgtccgc gctcaaggag gccgtggggg ctgggggtgc cgatgtcgtc ttcgaccctg
     2161 tgggtggggg tgcctatgac gcgagcacca aggtcgtcgc cttcgaggga cggatcgtcg
     2221 tggtggggtt caccagcggt cagatcccca cgccgggact caaccacgcg ctcgtgaaga
     2281 actactcgat cctcgggctg cattggggtc tgtatctgca gcgcgaccac tcggtcgcca
     2341 ctgaggcaca cgcgcagctg acccgctggg ccgaagccgg ggtgatcaaa cccgttgtct
     2401 cgcaacaggt tcccttcggc gaggcgccca gtgccctgcg ccggctgggt gccggcgaga
     2461 gca
//
LOCUS       DASYFY010000239         1801 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1173474, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000239 DASYFY010000000
VERSION     DASYFY010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173474"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1204)
                     /locus_tag="VGN19_04675"
     CDS             complement(<1..1204)
                     /locus_tag="VGN19_04675"
                     /EC_number="3.5.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanine deaminase"
                     /protein_id="HEV7195214.1"
                     /translation="MTLFRAPVLDTPVSPFEGGALRSEDDAGLLVEQGTIVARGPFAQ
                     VAAEHPDADVLDLRDGLLLPGMVDTHVHFPQVRVIGGLGKPLLDWLAECALPEELRLA
                     DVDLARGVARDFVTGLVGAGTTTALVFGSHFASAVDVMFEAADLWGLRVTTGLVVSDR
                     LLPEPLLTTPERAYEEARDLAARWHGKGRLRYAVTPRFSFSASDPILASCAATFEETP
                     GAWFTSHVNENNAEIAEVARLFAGAAYVDTYDRHGLVTERSVLAHNVHPTDDELGLLA
                     ARGAAVAHCPTSNCALGSGLFPLRRHLDAGVKVAIGSDVGAGTGFSLFKEGLQAYFMQ
                     QLLGPQGYPLTSSHLLYLCTAAGADALGLGDQVGALSVGRQFDAVWVLPEGGDPLAVG
                     LGNAKSPED"
     gene            complement(1201..>1801)
                     /gene="xdhC"
                     /locus_tag="VGN19_04680"
     CDS             complement(1201..>1801)
                     /gene="xdhC"
                     /locus_tag="VGN19_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="xanthine dehydrogenase accessory protein XdhC"
                     /protein_id="HEV7195215.1"
                     /translation="LNDKAPVEHGQQCCGGEVAILLEPLAVVPSVAVFGMGHVGLELA
                     RILARHDLELHLVDSRADHLTADRFAALEDSVATIHVHHAPVPELVLGEVPRGTHVLV
                     MTHDHAEDVALCDAALRCGHLASIGLIGSSAKWRRFEKRLLEEGHDPSAVARITTPIG
                     LADLGGKEPAVIAVSVAADLLRTFEAELAASRSRQEARG"
BASE COUNT          279 a          637 c          644 g          241 t
ORIGIN      
        1 cgtcctcggg cgacttggcg ttgccgagcc cgactgccag cgggtcccct ccctcgggga
       61 gcacccagac cgcgtcgaac tgccggccca cgctgagggc acccacctgg tcaccgaggc
      121 caagtgcgtc ggccccggcc gccgtgcaca ggtacagcag gtgcgacgag gtgagcgggt
      181 acccctgcgg accgagcagc tgctgcatga agtacgcctg caggccttcc ttgaacagcg
      241 agaaccctgt gcccgcaccc acatccgacc cgatcgccac cttcaccccg gcgtcgaggt
      301 gccggcgcag ggggaacagg ccgctgccca gggcgcagtt gctggtcgga cagtgtgcga
      361 ccgctgcacc gcgggcagcg agcagcccca gctcgtcgtc ggtggggtgg acgttgtggg
      421 cgagcactga ccgttccgtc accagcccgt gccggtcata ggtgtccacg tatgccgcgc
      481 ccgcgaaaag ccgtgccacc tctgcgatct cggcattgtt ctcgttgaca tgggaggtga
      541 accacgcacc gggagtctcc tcgaacgtcg cggcgcacga ggcaaggatc gggtcgctgg
      601 cagagaacga gaaccgtggt gtcacggcat accgcaggcg gcccttgccg tgccatcgcg
      661 cggcgaggtc gcgagcctcc tcgtacgctc tctcgggagt ggtgaggagg ggctcgggga
      721 gcaggcggtc ggacacgacc aggcccgtcg tcacgcgcag cccccacagg tcggccgcct
      781 cgaacatcac gtccaccgct gaggcgaaat gggacccgaa caccagcgcg gtcgtcgtcc
      841 cggcgcccac gagtccggtg acgaagtcgc gggcgacgcc gcgggcgagg tcgacgtcgg
      901 cgagccgcag ctcctcgggc agggcacatt cggcgagcca gtcgagcaac ggcttgccga
      961 gtcccccgat gacccggacc tgcgggaagt ggacgtgggt gtccaccatg ccgggcagca
     1021 ggaggccgtc gcgcaggtcg agcacgtcgg cgtcggggtg ctccgcggcc acctgggcga
     1081 agggccctcg ggccacgatc gtcccctgct cgaccagcag cccggcatcg tcctcggagc
     1141 gaagcgcgcc gccctcgaag ggactgaccg gggtgtcgag caccggcgcc cggaacagcg
     1201 tcaccctcgt gcctcctgtc gggaccggct cgcagccagc tcggcctcga aggtgcgcag
     1261 gaggtcggcc gccacgctca cagcgatgac ggccggctcc ttgccgccga gatcggccag
     1321 cccgatcggg gtcgtgatcc gcgcgacggc cgaggggtcg tggccctcct cgagcagccg
     1381 cttctcgaac cgtcgccact tggcggagga gccgatgagg ccgatcgacg cgaggtggcc
     1441 gcagcgcagg gcggcgtcgc acagcgcgac atcctcggcg tggtcgtggg tcatcaccag
     1501 gacgtgggtc ccgcggggta cttcgccgag gacgagctcg ggaacgggcg cgtggtgcac
     1561 atggatcgtg gccaccgagt cctccagtgc cgcaaagcgg tccgcggtca ggtggtcggc
     1621 ccgggagtcg acgaggtgca gctcgaggtc gtggcgcgcc aggatcctcg cgagctcgag
     1681 gccgacgtgc cccatcccga acaccgccac cgacggcacg accgccaggg gctcgagcag
     1741 gatggccacc tcacctccac aacactgctg gccgtgctcg accggtgcct tgtcgttgag
     1801 c
//
LOCUS       DASYFY010000240         2558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_490389, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000240 DASYFY010000000
VERSION     DASYFY010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490389"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..353
                     /locus_tag="VGN19_04685"
     CDS             <1..353
                     /locus_tag="VGN19_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195216.1"
                     /translation="IFWCVSFFFASAGASSAYLTVSEIFPLEVRGQAISYFFAIAQVV
                     GALGPVLFGALVGEGKERGPLFWGYVLASAIMVIGGAVAMFIGVDAEGKGLEDIADPL
                     SRVSGEPPLEPARA"
     gene            363..923
                     /locus_tag="VGN19_04690"
     CDS             363..923
                     /locus_tag="VGN19_04690"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7195217.1"
                     /translation="MIDHNAPYTIVVGVSATSKSPAALHWAAELAALRGGRVVAVRAW
                     RPTPPQTSSRVSPSPLTEDASLAHEQELASLEADVDEVLGAGHGVEVRLVEGGRRRAL
                     VRASEEADLLVVDAPRRLDLSSGPGFAQRLVYTARCPVVVIPPNLSGAPRTGLERAAA
                     AVGRTVADAAGRSGRPGLSHPPDAGY"
     gene            990..1490
                     /locus_tag="VGN19_04695"
     CDS             990..1490
                     /locus_tag="VGN19_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HEV7195218.1"
                     /translation="MERAIREAQERGDFDNLPGAGKPLRNLGNPETEDPNWWVRGLLE
                     RENIDLTGAMPPALALRKEAETYPQSLLDLHTEESVRAVLEDYNRRVRQDRLRPALGP
                     LPPLIARTLDVDDLVRQWRELRDASVREAPPAHAAYPSVQSAPDRKRPGWLRRLLRRS
                     VRRGLG"
     gene            complement(1878..>2558)
                     /locus_tag="VGN19_04700"
     CDS             complement(1878..>2558)
                     /locus_tag="VGN19_04700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195219.1"
                     /translation="PTPAPVYSCVQTSTQGKCYYSAVPYITGASGDPYINQNIWASDG
                     KYQQTLYAASPRDWYITANANTNFGGVLTYPNVGWNMSGTVDSKAVTSSSWSTTIPHN
                     PETAAWAAYDLWFNNWADEVMIQTDIAANSYYNCAAVTTATFGGQPWHMCQFGSERVW
                     KPGTDDNHLINRASGTLDIKAMLVWMEQHGFLPASSTWTAGSYGFEVCDTGGLTQKLA
                     VNDFSWRS"
BASE COUNT          348 a          838 c          939 g          433 t
ORIGIN      
        1 cgatcttctg gtgcgtctcg ttcttcttcg cctcggcggg cgcctcctcg gcctacctca
       61 ccgtcagcga gatcttcccc ctcgaggtgc gcgggcaggc gatctcgtac ttcttcgcca
      121 tcgcccaggt ggtgggcgcg ctcgggccgg tgctcttcgg tgcgctcgtg ggcgagggca
      181 aggagcgcgg cccgctgttc tggggctacg tgctcgcctc ggcgatcatg gtgatcgggg
      241 gtgccgtggc gatgttcatc ggcgtcgacg ccgagggcaa gggtctggag gacatcgccg
      301 acccgctcag ccgggtgtct ggggaaccgc cgctcgagcc ggctcgcgcc taggaggtca
      361 cgatgatcga ccacaacgcg ccatacacga tcgtcgtggg cgtcagcgcg acctcgaagt
      421 ccccggcggc tctccactgg gcggccgagc tcgccgccct gcgcgggggc cgggtggtgg
      481 ccgtgcgcgc gtggcgaccg actccgccgc agaccagctc gcgggtcagc ccctcgccgc
      541 tgaccgagga tgcctccctt gcccatgagc aggagctggc ctcgctcgag gccgacgtcg
      601 acgaggtgct cggtgccggt cacggtgtcg aggtccggct cgtggagggt ggccggcggc
      661 gggcgctcgt gcgggcctcc gaggaggccg acctgctcgt ggtcgacgct ccccggcggc
      721 tcgacctctc ctcggggccc gggttcgccc agcgcctcgt gtataccgcc cgctgccctg
      781 tggtggtgat cccgcccaac ctctcgggtg ccccgaggac gggactggaa cgagcggctg
      841 cggcagtcgg gcggacggtt gccgacgcgg cgggcaggtc gggtcgaccg ggtctcagcc
      901 atccgcccga cgcgggatac tgaggtcgtc cagggacgga gctggctggt gctgtcggag
      961 gcctgagggt ggagcgttat gagtcgcccg tggagcgggc gatccgcgag gcgcaggagc
     1021 gcggtgactt cgacaacctg cccggcgcgg gaaagcctct gcgcaacctg ggcaaccccg
     1081 agaccgagga cccgaactgg tgggtgcggg gcctgctgga gcgcgagaac atcgacctga
     1141 cgggggccat gcccccggcc ctggcgctgc gcaaggaggc cgagacctat ccgcagtcgc
     1201 tgctggacct gcacaccgag gagagcgtcc gcgcggtgct cgaggactac aaccggcggg
     1261 tccggcagga ccggcttcga ccggcgctcg ggccgctgcc gccgctgatc gcccggacgc
     1321 tggacgtcga cgacctcgtg cggcagtggc gtgagctgcg ggacgcctcg gtgagggagg
     1381 caccgcccgc ccacgcggca tacccctctg tgcagtccgc gccggaccgc aagcgcccgg
     1441 gctggctcag gcgcctgctg cgccggtcag tccgacgtgg gctcggctga cagcacgctc
     1501 tgctggctcg gcagcacggc caccatggtg gtgcgagtcc gtggtcctgc cacgcgggcg
     1561 ctcacctgag gtctcttgac gtcaagaaga cagtgcgctc gtcgcgcggc ccgggccctg
     1621 tcttgtgcag tacggacgcg accctctatg cgcctctggc gcgagcgaat gcactgcaaa
     1681 catcacatgc tccgacaaaa ccataggtcg ccgccccctc ggtacacccc cccttcggtt
     1741 gaaggggggt gtacggaggc tcggtcacgg cgcgatgcgg gttctgaacc ggcgtccggc
     1801 gttgcgcatc atcgagggca cgcgtggcca cgaagaggcg cgcgcctgcc agatccgccc
     1861 tggagcagcc ggcggagtca ggacctccat gagaagtcgt tgacggcgag cttttgggtc
     1921 aatccgcccg tgtcgcagac ctcgaagccg tagctgccgg cggtccaggt gctgctggcc
     1981 ggcaggaagc cgtgctgctc catccaaaca agcatggcct tgatgtccag cgtgccggat
     2041 gcccggttga tgaggtggtt gtcgtcggtg ccgggcttcc agaccctttc ggagccgaac
     2101 tggcacatgt gccacggctg tccgccgaac gtcgcggtgg tgaccgctgc gcaattgtag
     2161 tagctgttcg ctgcgatatc agtctggatc atgacctcat cggcccagtt gttgaaccac
     2221 aggtcgtaag ccgcccacgc ggcggtctca gggttgtgcg ggatcgtcgt gctccaggag
     2281 gagctggtga cggccttgct gtcgaccgtg ccgctcatgt tccagccgac gttggggtag
     2341 gtgagcacgc cgccgaagtt ggtgttcgca ttggcggtga tgtaccagtc gcgcgggctg
     2401 gcggcgtaga gtgtctgctg gtacttgccg tcgctggccc agatgttctg gttgatgtac
     2461 gggtcaccgc tggcacccgt gatgtagggg accgcggagt agtagcactt gccctgggta
     2521 gacgtctgga cgcaggagta gacgggggcg ggagtcgg
//
LOCUS       DASYFY010000241         4940 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1436381, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000241 DASYFY010000000
VERSION     DASYFY010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4940
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1436381"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VGN19_04705"
     CDS             <1..311
                     /locus_tag="VGN19_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019134971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEV7195220.1"
                     /translation="TGWQADYPGLYDFIQPLYYTKASSNDGDYSNPALDKLIGQAASA
                     KTLNESNQLLNQAQTILFKDLPAIPLWYSNVTGGFSQNVSNVSIGWDSTPLYYSIYKK
                     "
     gene            432..1358
                     /locus_tag="VGN19_04710"
     CDS             432..1358
                     /locus_tag="VGN19_04710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195221.1"
                     /translation="MAWYVGRRVLQMIPVFFGATLLVYALVFLLPGDPIAALGGNRPL
                     APGVAAQLRHTYHLDQPFIIQYLDYLKGIIHWDFGTSYSGRPVSSVMAEAFPVTIRLA
                     LLALLFEGVLGIGAGLIAGLRRGGIFDASLLIASLVVIAVPIFVIGFFVQIVFGVKLG
                     WINPTVGPEATWGELIVPAMVLGSVSFAYVLRLTRDSITENLSADWVRTASAKGLSRR
                     RVVSTHVLRNSLIPVATFLGADLGSLMAGAIITEGIFNIPGVGHALYQAIVRGEGATV
                     VSIVTVLVLIYIATSLVVDLLYAVLDPRIRYV"
     gene            1351..2301
                     /locus_tag="VGN19_04715"
     CDS             1351..2301
                     /locus_tag="VGN19_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018773797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195222.1"
                     /translation="MSETALWAAQSHFVADLEETPLQVTDKLDESTPPGGLWLEAWRT
                     LRRRPLFIVSSVIIVLLLLVAFFPDVFASKSPTFCQLQDSLAGSRSGHPFGFDIQGCD
                     IYSRVIHGARASISVGVLTTLLTVIFGGTVGALAGFYGGWLDSFLARITDIFFSVPLL
                     LGAITCMQAFTDKTVWVVALVLAVFGWPQVARIMRGSVISVRSAEYVTAATALGASRS
                     KVLLRHVLPNAIPPVIVIATVSLGAFIGAEATLSFLGIGLNPATTVSWGGDISQAQNV
                     LRSNPSVLLYPAAALSLTVLSFIMLGDAVREALDPKSRKR"
     gene            2298..4064
                     /locus_tag="VGN19_04720"
     CDS             2298..4064
                     /locus_tag="VGN19_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018134548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195223.1"
                     /translation="MSDVISSTSQTYVDRNAPLLEIKDLDVAFRGPDGKDIPAVRGAN
                     LVVYPGQTVAIVGESGSGKSTTAHAVIDLLPGTGHITGGQILFEGRDITKMRRGEAEE
                     LRGEGIGLVPQDPMSNLNPVWKIGYQVSEALKANGKAKGSDAKRQAARLLTEAGLGDA
                     DRRLKQYPHEFSGGMRQRTLIAIGLASRPRLLIADEPTSALDVTVQRQILDHLETLTD
                     ELGTAVLLITHDLGLAAERAEQLVVMYRGRVVESGPARQILADPQHPYTRRLVASAPS
                     LAAHRAGTAAARAEVVERAAQVADAAAHEGGTLAAEAPEHVEVAATNDVLRIENLTKV
                     YKLRGAGRNTGEFKAVDDVSFDIRRGTTTAVVGESGSGKSTLAQMVLRLQEPTSGRVL
                     FDGVDVTSFDRKAQFAFRRRVQPIFQNPYGSLDPTYSIYRTIEEPLRLHSVGNKRERE
                     AIVREMLDRVSLPSSVMRRFPNELSGGQRQRIAIARALALRPEVVVCDEAVSALDVLV
                     QAQILDLLSELQAELGLTYLFITHDLAVVRQIADNVVVMQSGKMVEHADTNTVFDSPQ
                     QEYTRTLLHAIPGSRLELSAEA"
     gene            4078..4491
                     /locus_tag="VGN19_04725"
     CDS             4078..4491
                     /locus_tag="VGN19_04725"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEV7195224.1"
                     /translation="MTSARRLLLVHAHPDDETINNGATMARYIAAGVQVTLLTCTLGE
                     EGEILVPELAQLAADQADQVHRPAPPCEVVGRLGGFGREPLRRSTTGRTGLRRPWWPP
                     FAWVCSFSIPASRRCRARAGRNANDVNVMRGRVLG"
     gene            complement(4716..>4940)
                     /locus_tag="VGN19_04730"
     CDS             complement(4716..>4940)
                     /locus_tag="VGN19_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195225.1"
                     /translation="SPNHFAELSGPSQVSTYPVPKSGPGAHRGAMVPPPVQTGRREGT
                     HMKQVKGLTSCLLAAALLLRGGQPNPRQSP"
BASE COUNT          720 a         1726 c         1640 g          854 t
ORIGIN      
        1 gaaccggctg gcaggccgac taccccggtc tgtacgactt catccagccg ctgtactaca
       61 cgaaggccag ctcgaacgac ggtgactact ccaacccggc gctggacaag ctgatcggcc
      121 aggccgcctc ggccaagacg ctcaacgagt ccaatcagct gctgaaccag gcgcagacca
      181 tcctgttcaa ggacctgccg gccatcccgc tctggtactc caacgtcacc ggaggtttca
      241 gccagaacgt gtccaacgtg tccatcggct gggactcgac cccgctctac tactccatct
      301 acaagaagta gcgcggctca gcgtgcggtg cggggtgggg cgcatgtgtc ccccccgcac
      361 ccatgcccgg gaatcccaga ttctcaagcg cgtcagtttc gcggcgagtg cgcacgacta
      421 ggaggttcgt agtggcgtgg tacgtgggac gccgtgtact gcagatgatc cccgtcttct
      481 tcggcgcgac cctgctggtc tacgcgctgg tgttcctcct accgggggac cccatcgccg
      541 cgctcggggg caaccggccg ctcgctccgg gggtggccgc ccagttgcgg cacacctatc
      601 acctggatca gccgttcatc atccagtacc tggattacct caaggggatc atccactggg
      661 acttcggcac gtcctactcg ggacgtccgg tctcctcggt gatggccgag gccttcccgg
      721 tcaccattcg gctggccctg ctggccctgc tgttcgaggg tgtcctgggc atcggcgccg
      781 gcctgatcgc cgggctgcgt cgcgggggca tcttcgacgc ctcgctgctg atcgccagcc
      841 tcgtcgtcat cgccgtcccg atcttcgtca tcggcttctt cgtgcagatc gtgttcggcg
      901 tcaagctcgg ctggatcaat ccgacggtgg gtccggaggc cacctggggc gagctgatcg
      961 tccccgccat ggtgctcggc tcggtctcct tcgcctacgt cctgcggctg acccgggact
     1021 cgatcaccga gaacctcagc gccgactggg tgcgcaccgc ctcggccaag gggctgtcac
     1081 ggcgccgggt ggtgagcact cacgtcctgc gcaactcgct gatcccggtg gccaccttcc
     1141 tcggtgccga cctgggttcg ctgatggcgg gcgcgatcat caccgagggc atcttcaaca
     1201 tccccggcgt ggggcacgcc ctctaccagg ccatcgtgcg tggcgagggt gccaccgtcg
     1261 tctcgatcgt cacggtgctg gtgctgatct acatcgcgac cagcctggtg gtcgacctgc
     1321 tctacgccgt cctggacccg aggattcgtt atgtctgaga ccgctctgtg ggccgcgcag
     1381 tcgcacttcg tcgccgacct cgaagagacg ccgctgcagg tgacggacaa gctggacgag
     1441 tccacccctc cgggcggtct ctggctcgag gcctggcgca ccctgcgccg ccgcccgctg
     1501 ttcatcgtct cctcggtgat catcgtgctg ctcctgctcg tggcgttctt cccggacgtg
     1561 ttcgcctcga agagccccac gttctgccag ctgcaggaca gcctggccgg ctcccgctcg
     1621 ggtcacccgt tcggcttcga catccagggc tgtgacatct actcccgggt catccacggc
     1681 gcccgcgcgt ccatcagcgt gggtgtgctg accacgctgc tcaccgtgat cttcggtggg
     1741 accgtcgggg cgctggccgg cttctacggc gggtggctcg actcgttcct ggcccgtatc
     1801 accgacatct tcttctcggt gccgctgctc ctcggagcca tcacctgcat gcaggccttc
     1861 accgacaaga cggtgtgggt cgtcgcgctc gtgctcgccg tgttcggctg gccgcaagtc
     1921 gcccgcatca tgcgcggctc ggtcatctcg gtccggagcg ccgagtacgt gaccgcggca
     1981 accgcgctgg gggcgtcccg gtcgaaggtg ctgctgcggc acgtgctgcc caatgcgatc
     2041 ccgccggtga tcgtcatcgc gaccgtctcg ctcggcgcgt tcatcggcgc cgaggcgacc
     2101 ctgtcgttcc tgggcatcgg gctgaacccc gcgacgaccg tgtcctgggg tggcgacatc
     2161 agtcaggcgc agaacgtgct gcgctcgaac ccctcggtgc tgctctaccc ggccgccgcg
     2221 ttgtcgctga ccgtgctgag cttcatcatg ttgggcgacg cagtgcgtga ggccctcgac
     2281 cccaagtcac gcaagagatg agcgacgtca tttcctcgac cagccagacc tacgtggacc
     2341 gcaacgcccc tcttctggag atcaaggatc tcgacgtggc cttccggggg cccgacggca
     2401 aagacatccc ggctgtgcgc ggggcgaacc tggtcgtcta tccgggtcag accgtggcga
     2461 tcgtcggtga gtccgggtcg gggaagtcga ccaccgccca tgcggtcatc gacctgctgc
     2521 ccgggaccgg tcacatcacg ggtgggcaga tcctcttcga gggccgcgac atcaccaaga
     2581 tgcgccgggg tgaggccgag gagctgcgcg gggagggcat cgggctggtg ccgcaggacc
     2641 cgatgtccaa cctcaacccg gtgtggaaga tcgggtacca ggtctccgag gcgttgaagg
     2701 cgaacgggaa ggcgaagggg tccgatgcca agcggcaggc ggcccggctg ctgaccgagg
     2761 cgggtctcgg ggacgccgac cggcgtctca agcagtaccc gcacgagttc tccggcggta
     2821 tgcgccagcg caccctgatc gccatcgggc tggcctcgcg gccgcggctg ctcatcgccg
     2881 acgagcccac ctcggccctc gacgtcacgg tccagcggca gatcctcgat cacctggaga
     2941 ccctgaccga cgagctgggc accgcggtgc tgctgatcac gcacgacctc ggtctggccg
     3001 ccgagcgggc cgagcagctg gtggtgatgt atcgcggccg ggtggtggag tcgggtccgg
     3061 cccggcagat cctcgccgac ccccagcacc cctacacccg ccggctggtc gcctcggcgc
     3121 cgtccctggc ggcccaccgt gccgggacgg ccgcggcgcg ggccgaggtg gtcgagcggg
     3181 ccgcgcaggt ggccgatgcc gccgcgcacg agggcgggac cctggcggcc gaggcgccgg
     3241 agcacgtcga ggtcgccgcg accaacgacg tcctccgcat cgagaacctg accaaggtct
     3301 acaagctgcg cggcgccggc cggaacaccg gcgagttcaa ggccgtcgac gacgtgagct
     3361 tcgacatccg gcgggggacc accaccgctg tggtgggcga gtccggctcg ggcaagtcca
     3421 cgctggccca gatggtcctg cggctgcagg aaccgacctc ggggcgggtg ctgttcgacg
     3481 gcgtggacgt gaccagcttc gaccgcaagg cgcagttcgc cttccgccgc cgggtccagc
     3541 ccatcttcca gaacccctac ggctccctcg accccacgta cagcatctac cgcaccatcg
     3601 aggagcccct gcggctgcac agcgtgggca acaagcgtga gcgcgaggcg atcgtgcggg
     3661 agatgctgga ccgggtgtcg ctgccgtcgt cggtcatgcg gcgcttcccc aacgagctct
     3721 ccggcggcca gcgccagcgc atcgcgatcg cccgggccct ggccctgcgt cccgaggtcg
     3781 tcgtctgcga cgaggcggtg tcggcgctgg acgtgctcgt gcaggcgcag atcctcgacc
     3841 tgctctcgga gctgcaggcc gagctcgggc tcacctacct cttcatcacc cacgacctgg
     3901 ccgtcgtccg gcagatcgcc gacaacgtcg tggtgatgca gagcggcaag atggtcgagc
     3961 acgccgacac caacaccgtc ttcgactcgc cgcagcagga gtacacgcgc acgcttctgc
     4021 acgcgatccc ggggtcccgc ctcgagctgt cggcggaggc atagccacga tggtggcgtg
     4081 acctccgccc gccgactcct gctggtccac gcccaccccg acgacgagac gatcaacaac
     4141 ggggcgacca tggcccgcta catcgccgcc ggtgtccagg tcacgctcct cacctgcacg
     4201 ctgggggagg agggcgagat cctcgtcccg gaactcgccc agctcgccgc ggaccaggcc
     4261 gaccaggttc accgcccggc gccgccctgc gaagtcgtcg gccgcctggg cgggttcggt
     4321 cgcgaacctt tgcgtcgttc gacgacgggc aggaccggtt tacgccgtcc gtggtggccg
     4381 ccctttgcct gggtgtgttc cttttccata ccggcgtctc ggcgatgtcg tgcgcgggca
     4441 ggccggaatg cgaatgatgt caatgtaatg cggggtcgcg tcctcgggtg attgacgtgg
     4501 gtcaacaagc cgccgtcagc gcagcgtttg gaactgctgc actgatcggt gacatcgggt
     4561 gaggcagcgt gcgtcgggac agcagcgtca tgagttcgcc ccttcatggg ggcaaatttg
     4621 ctcactcgat gagtcgagcg acacccagac atgccgctgt gccgcatctc catgtgagag
     4681 tcgaccccag acaggcgaga gactctccat gaagttcagg gcgactggcg tgggttcggt
     4741 tggcctccgc gcaggagcag tgccgcggcc agcagacagg acgtgagtcc cttgacctgc
     4801 ttcatgtgcg tgccttcccg gcgtcccgtc tggaccggtg gcgggaccat agccccgcgg
     4861 tgagcccccg gcccggattt gggcacgggg tacgtcgaga cctgcgacgg tccgctcagc
     4921 tcagcgaagt ggttgggact
//
LOCUS       DASYFY010000242         6325 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_280800, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000242 DASYFY010000000
VERSION     DASYFY010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6325
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280800"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..308)
                     /locus_tag="VGN19_04735"
     CDS             complement(<1..308)
                     /locus_tag="VGN19_04735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195226.1"
                     /translation="MKASKVLAAVGVASALVAAGSPAFASNGVNSNELLKHGAAMRTV
                     HAAASSRTAQAATLASEQMTYHGGQVQTAPKVYVVYYGSQWGSAGTNGLPTTDPSGVA
                     P"
     gene            841..2184
                     /locus_tag="VGN19_04740"
     CDS             841..2184
                     /locus_tag="VGN19_04740"
                     /inference="COORDINATES: protein motif:HMM:NF039776.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GEVED domain-containing protein"
                     /protein_id="HEV7195227.1"
                     /translation="MGITLSPAAWAYQVPTSPATINGGVATLTLPGSGLTTTISTTGL
                     TGVTQASTLGSRGYVASDFTPGLTTTTPAVELSTDAVNNCPAVGTCSGLGSITVTFSQ
                     PVRNPILDIAGIGGDVFQFDSNHVVTSQSQLHSIFTLTTPGITMTDLSGGNLAVSGQT
                     ITATSASTSYRCDTAVQSTPSLGVKEYDAQATAACGSVRLNGIITSVTFDLSALFTRT
                     TSAVPAYTNNNLSDPRHNQDAYVITATAGEDFGDAPASYDQGNAARAILSDLTLGPTV
                     TEDNATVANGAASPNAGPTAALDGGDDGVTLGPLTTAATSYSTTVSISGASKPGIVCG
                     WIDVNSNGIFDTAERACATFAAGATSATLTWSGLSGLTAGNTYARFRVGYDVAQTQSP
                     IGASSAGEVEDYLLPITAEVAVPVIDPRVALGLLPLGGLALLGARRSARRRRLAS"
     gene            2181..3320
                     /gene="wecB"
                     /locus_tag="VGN19_04745"
     CDS             2181..3320
                     /gene="wecB"
                     /locus_tag="VGN19_04745"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017203013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEV7195228.1"
                     /translation="MTGLPPRSVAVVLGTRPEIVKLAPVIRRLGDVAFVIHTGQHFDG
                     SMSEVFLREHGLAEPDLRLAAGGYGRAEQLSHMLVGLDRLFAEGRFVATVVQGDTNST
                     LAGALAANGRGVPLVHVEAGLRSHDRAMPEEHNRVMTDHLADVLCAATPDNVANLRAE
                     GIPASRIRLTGNTVVESVLDQLPERPARLRLLVELGLKPDGYVLATIHRPENTDSAVT
                     LRAILTELAVLPLPVVLPLHPRTAAAAAGAGLEELLAQLRVVDPVGSATFLALAAHAA
                     VLVSDSGGVQEECTVLKRPLVVVRRSTERPEAMTDFAVLVAPGPQIGHGVGAMLEGHA
                     QRIATLKRLPSPFGDRTAADLVVDTIRDLVDGPRQTLAMTAQHQG"
     gene            3326..3505
                     /locus_tag="VGN19_04750"
     CDS             3326..3505
                     /locus_tag="VGN19_04750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195229.1"
                     /translation="MYGSSMGLPGAGVGVVVGGSTLAMTGAAAVPVLVTAALVLIAAG
                     AALARLAFLRRKPVP"
     gene            3502..4857
                     /locus_tag="VGN19_04755"
     CDS             3502..4857
                     /locus_tag="VGN19_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017203011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7195230.1"
                     /translation="MIVAMLQGLSLFAMVLFIGYVATIVVPYLRHQPDVPGDASTFDW
                     HILIPARDEEVVIAATVTRLLRDFPTTHVWVIDDDSEDRTAQIVHGMATDPRVHLVQR
                     RRPQARTGKGDALNAAYNALLRWLPSDHDPARVIVGVVDADGSLAPDVLDLVAGARVF
                     GDPQVGGVQISVRMSNRFGRGDGTARSVLGAGFARFLVRMQDLEFVGTISAMQMLREK
                     TGSVGLGGNGQFSRLSVLNTLTEDFDAPWHGALLEDYELGLHILLAGYQNRFVFSAEV
                     DQEAVESLRRLIAQRTRWAQGGMQCSRMYLTPILQSRHLSTAGALEAAYFLIAPWTQL
                     FGVLYWPSLYAVFAVKALNFPGGPVAFAQTFWFLAVVTLVTGVGPFALWGPLYRRVVD
                     PSMSRFRSVLLGLEYAAYLTYTYPTTVRAFGRMLSGRTGWAKTRRNAEPLVAGPVAIE
                     A"
     gene            4895..5464
                     /locus_tag="VGN19_04760"
     CDS             4895..5464
                     /locus_tag="VGN19_04760"
                     /inference="COORDINATES: protein motif:HMM:TIGR04178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195231.1"
                     /translation="MPAGFLVVLAALLLVENDAFRSLEARGARPLVGLLTHHGTSRAV
                     GDVIFFGLGTRDALGLKITTGCTTVVLLVPFLLIMAAIAAKSPVPATRVVAAATVGSA
                     MLVAVNLIRLTGIAWATSIWGLTDGFEISHFLAGSIFAIVGFAAALVISVRLLVGRAD
                     AQGAYQRAGRRHSGRHRGPGRGPLSGPSR"
     gene            complement(5685..6095)
                     /locus_tag="VGN19_04765"
     CDS             complement(5685..6095)
                     /locus_tag="VGN19_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010156672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195232.1"
                     /translation="MTAPTPYLQLPGTARDALTFYGDVFGCAVQLHTFAEFDRADGPG
                     DAIAHGYLHEGPVALFAADVSGDEPSLNCQGMMLSLLGAARPSVLRSWFAGLSEGGRI
                     VEDLQERPWGASDGQVVDRFGLRWLIGFEGDENE"
     gene            complement(6049..>6325)
                     /locus_tag="VGN19_04770"
     CDS             complement(6049..>6325)
                     /locus_tag="VGN19_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195233.1"
                     /translation="VLLVTPDDPPRLSEEEAERLQDAHLSHLADLHDRGVLLAAGPLT
                     DPSPGRHYRGLSILRCDREEALRLKGDYVPSGHDCTHALPPAARYCP"
BASE COUNT          963 a         2236 c         2094 g         1032 t
ORIGIN      
        1 ggcgccaccc cggacgggtc cgtggtcggc aggccgttgg ttccggctga gccccactgg
       61 ctgccgtagt acacgacgta caccttgggt gccgtctgca cctgaccacc gtggtaggtc
      121 atctgctcgg atgccagcgt cgccgcctgg gccgtcctgc tgctcgcggc tgcgtgcacc
      181 gtgcgcatcg cggcgccgtg cttgagtagc tcgttgctgt tgacaccgtt ggacgcgaac
      241 gctggagacc cggcggccac cagagccgag gccacgccca ctgcggccag aaccttcgaa
      301 gctttcacaa atcgctcctt cgtcaagccg acggttccga gatgatgagc cgttcggcaa
      361 ccaggcggcg ggtgtgccgc gcgagcagca gcctgatggg tcagagcctg aacgtgcgag
      421 ccttttggac aaacgatgaa caggaaatgg ccactgcaat aaccaagcga gcgctcacgt
      481 tcaccagcac gagcaaacgt gtggcgtgta gggattgctc tcaccgtggt tgccgcccga
      541 cagctggctc gccgtgcgcg cctcgggatg cgcactgccc tggcggctct gtctgatgac
      601 gagtgggcgg tcgcctgagc ctttggccgt gccgaagtcc gggccggcac cgttttctgg
      661 cgcagcgtct tttctctggc gcagcgtcac acttcccgcg attccccgtc cccacgtaga
      721 ccggtgacca gtaccgaggg gaaaagaatc gtgaaggctg gaacgtgcat acgccatgtc
      781 cgctcgaagt cagggggccg ccgcgtccga tggggtacgg cggtagcagc cgccgtcttg
      841 gtgggcatca ccctgagccc cgcggcgtgg gcctatcagg tgcccacgtc gcccgcgacg
      901 atcaacgggg gcgttgccac cctgacgctg ccaggctcgg ggctgacgac gaccatctcg
      961 acgaccggcc tcaccggcgt cacacaggcc tcgaccctcg gcagccgtgg atacgtggcc
     1021 agcgacttca ccccagggct gaccaccaca acccccgctg tcgagctatc cacagacgcc
     1081 gtcaacaact gtcctgcggt gggcacttgc tcagggctgg ggtcgatcac cgtcaccttc
     1141 agccagccgg tgcgcaaccc gatcctggac atcgcaggca tcggcggtga cgtcttccag
     1201 ttcgactcca accacgtcgt gacctcgcag tcccagctcc actcgatctt caccctgacc
     1261 acccccggga tcacgatgac cgacctgtcc ggtggcaacc tggccgtatc cggacagacg
     1321 atcaccgcca ccagcgccag caccagctac cgctgcgaca ccgcggtcca gtcgacaccc
     1381 tcgctgggcg tcaaggagta cgacgcccag gccacggccg cctgcggatc ggtgcggctc
     1441 aacgggatca tcacgtcggt gactttcgac ctcagtgcgc tgttcacccg caccacgagc
     1501 gccgttccgg cctataccaa caacaacctc agcgacccca ggcacaacca ggacgcctac
     1561 gtcatcacgg cgaccgcggg tgaggacttc ggcgatgcgc ccgcgtccta cgaccagggc
     1621 aacgcagcac gcgccatcct gtcggacctg acattgggtc ccactgtcac cgaggacaac
     1681 gccactgtcg ccaacggcgc agcctcaccc aatgccggcc cgaccgcggc cctcgatggt
     1741 ggcgacgacg gcgtcaccct cggtccgctg accactgcgg ccacgagcta cagcacgact
     1801 gtctcgatca gtggggccag caagcccggc atcgtatgcg gttggatcga cgtcaactcc
     1861 aacggcatct tcgacacggc cgaacgggcc tgcgcgacgt tcgccgccgg cgcgaccagc
     1921 gcgaccctga cctggtctgg gctgagcgga ctgaccgccg ggaacaccta cgcgcgattc
     1981 cgcgtgggct atgacgtcgc gcagacccag tcgcccatcg gcgcctccag tgcgggcgag
     2041 gtcgaggact acctcttgcc gatcaccgca gaggtcgcgg tcccagtgat cgacccgcgg
     2101 gtcgccctgg ggctgctccc cctcgggggc ctggccctgc tcggcgcccg ccgatcagcc
     2161 cgtcgtcgcc gtctcgcgtc gtgacgggcc tccccccacg cagcgtcgca gtcgtcctgg
     2221 gcacccggcc cgaaatcgtc aagctcgccc cggtgatccg gcgtctgggc gacgtggcgt
     2281 tcgtcatcca caccggtcag cacttcgacg gaagcatgtc cgaggtgttc ctgcgcgagc
     2341 acggcctggc cgagccggac ctgcggctcg cagcgggtgg ctacggtcgt gctgagcagc
     2401 tctcgcacat gctggtcggg ctcgaccggc tgttcgcaga gggccggttc gtcgcgacgg
     2461 tggtccaggg cgacaccaac tcgaccctcg ctggggcgct cgccgcgaac gggcgaggcg
     2521 tgccgctcgt gcacgtcgag gccggcttgc gcagtcatga ccgcgccatg cccgaagagc
     2581 acaaccgagt catgaccgac cacctcgccg atgtgctctg cgccgccacg ccggacaacg
     2641 tcgcaaacct ccgcgccgag gggatccctg ccagccggat ccggcttacg ggcaacaccg
     2701 tcgtggagtc ggtcctggac cagctccccg agcgcccggc gcggcttcgg ctgttggtgg
     2761 agctggggct caagccggat ggctatgtcc ttgcgaccat ccatcgcccc gagaacaccg
     2821 actcggccgt gacgctgcgc gccatcctga ccgaacttgc cgttctgcct ctaccagtgg
     2881 tgctcccgtt gcacccacgg acggcggcgg cggctgctgg cgcgggcctt gaggagctgt
     2941 tggcacagct tcgcgtggtg gaccccgtgg ggtccgcgac ctttctggcg cttgccgccc
     3001 acgcggcggt cctcgtctcg gactccggcg gggtccagga ggagtgcacc gtgctgaagc
     3061 ggccgctcgt cgtcgtgcga cggtccaccg agcgcccgga agcgatgacg gacttcgcgg
     3121 tcctcgtcgc gcccggccct cagatcggcc acggcgtcgg ggcaatgctc gaggggcacg
     3181 cccaacgcat cgcgaccctg aaacgactgc ccagcccgtt cggggatcgc accgccgctg
     3241 acctggtggt ggacacgatc cgcgacctgg tcgacggccc gcgccagacc ttggcgatga
     3301 ccgcgcagca ccaggggtag ggaccatgta cggaagctca atgggactcc cgggcgccgg
     3361 cgtcggtgta gtcgtgggcg gcagcaccct ggccatgacg ggggcggccg ccgtgcccgt
     3421 gctggtcact gccgcactgg tactcatcgc agcgggggcg gccctggcgc gcctggcctt
     3481 cttgcggcgt aagcctgtgc cgtgatcgtt gccatgctgc aagggctgtc gctgttcgcg
     3541 atggtcctgt tcatcgggta cgtcgccacc atcgtcgtgc cctatctgcg gcatcaaccc
     3601 gacgtgcccg gtgacgcgtc caccttcgac tggcacatcc tcatcccggc acgtgacgaa
     3661 gaggtcgtga tcgctgccac ggtcacccgg ctgttgcggg acttcccgac gacgcacgtg
     3721 tgggtgatcg acgacgacag cgaggaccgc actgcgcaga tcgtgcacgg gatggccacc
     3781 gatccccggg tccacctcgt gcagcgccgg cgcccgcagg cccgcaccgg caagggcgac
     3841 gcgctcaacg cggcatacaa cgccctgctg cggtggttgc ccagcgacca cgacccggca
     3901 cgcgtcatcg tgggcgtcgt cgacgccgac gggtcactgg ccccggacgt gctcgacctg
     3961 gtcgcgggcg cccgggtctt cggcgaccca caggtgggcg gggtccagat ctcggtgcgg
     4021 atgtccaacc gtttcgggcg gggcgacggc acggcgcgct cggtactcgg ggccgggttt
     4081 gcccgcttcc tggtgcgaat gcaggacctc gagtttgtgg ggaccatctc ggcgatgcag
     4141 atgctccgcg agaagaccgg ctctgtcggg ctcggcggca acgggcagtt cagtcggctg
     4201 tcggtgctca acacgctgac agaggacttc gacgcgccct ggcacggggc cctgctcgag
     4261 gattacgagc tgggtctgca catcctgctg gctgggtacc agaaccgctt cgtcttcagc
     4321 gccgaggtgg accaggaggc cgttgagagc ctgcgtcggc tgatcgccca gcgcacccgg
     4381 tgggctcagg gtgggatgca gtgctcacgg atgtacctca ctccgatcct gcagtcgcgt
     4441 cacctgagca cggcaggcgc cctggaggcc gcgtacttcc tgatcgcccc gtggactcag
     4501 ctcttcgggg tgctctactg gcccagtctg tatgccgtgt tcgccgtgaa ggcgttgaac
     4561 ttcccgggcg gtccggtggc cttcgcccag accttctggt tcctcgcggt ggtcaccctg
     4621 gtgacggggg tgggtccgtt tgcgctctgg ggaccgttgt atcggcgcgt agtcgacccg
     4681 agcatgagcc ggttccggtc cgtcttgctc ggcctggagt atgccgccta cctgacgtat
     4741 acctacccca cgacggtgcg cgccttcggc cggatgctct cgggccgcac ggggtgggcc
     4801 aagacgcgac gcaacgccga gccgctggtg gccggcccgg tcgccatcga ggcctgagat
     4861 ggcggctgcg ctgcccatct cacggagccg actggtgcca gccgggttcc tcgtcgtcct
     4921 ggccgcactg ctgttggtgg agaacgacgc cttccggtcc ctcgaggcac gcggtgcacg
     4981 accccttgtc gggctgctga cccaccacgg cacgtcgagg gcggtggggg acgtgatctt
     5041 cttcggtcta ggaacgaggg acgccctggg attgaagatc acgaccggct gcaccaccgt
     5101 cgttctcctg gtgccgttcc tgctcatcat ggctgccatc gccgccaaga gtcctgttcc
     5161 ggcgacgcgg gtcgtcgctg ctgcgaccgt cgggtcggca atgctcgtgg cggtcaacct
     5221 catccggctc accggcatcg cctgggccac gtcgatctgg ggactcaccg acggcttcga
     5281 gatcagccat ttcctggcag gctcgatctt tgcgatcgtc gggttcgccg ccgcgctggt
     5341 gatctcggtc cgactcctcg tgggccgagc tgacgcccag ggcgcgtacc agcgagcagg
     5401 tcgacgccac tcaggaaggc accgcggccc aggtcgtggg cccctatcgg gcccgagccg
     5461 ctgagcgacc aagggcgtgt tggttcgctt gacggtcagg ggtgccgccg tcaagcgaac
     5521 caaggcccag cctgcgcccg tcgcagctag gggcgagccc ccagcaggct gccgggccag
     5581 gacccccacc caccaggcaa agcgccggcg gacgaggggt cctcactccc attgagaggc
     5641 caaccgtccg caaatgtgac gcccgtgggc gggcgggcgt tacctcactc gttctcgtcg
     5701 ccctcgaaac cgatcaacca gcggagaccg aaacgatcca cgacctggcc gtccgaggcg
     5761 ccccagggcc gttcctgcag gtcttccacg atcctgcctc cctcggaaag ccccgcgaac
     5821 cagctgcgca gcacggaagg cctggctgca ccgagcaagg acagcatcat cccttggcag
     5881 ttgagcgaag gttcgtcgcc gctcacgtcg gcggcgaaga gcgccaccgg cccctcgtgc
     5941 aggtaaccgt gggcgatggc gtcgcccggg ccgtcagccc ggtcgaattc cgcgaaggtg
     6001 tgcagctgca cggcgcagcc gaacacgtcc ccatagaagg tcagcgcgtc acgggcagta
     6061 cctggcagct ggaggtaagg cgtgggtgca gtcatgcccc gatggtacgt agtcgccctt
     6121 gagcctcagc gcctcctcgc ggtcacagcg caggatcgac agcccccgat aatgacgacc
     6181 cgggctcggg tcggtcagcg gtccggcagc cagcaggacg ccgcggtcat gcaagtccgc
     6241 gaggtggctc aggtgcgcgt cttggagccg ctcagcctcc tcctcggaga gccgaggagg
     6301 atcatctggg gtcaccagca gcaca
//
LOCUS       DASYFY010000243         1627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_490583, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000243 DASYFY010000000
VERSION     DASYFY010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490583"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VGN19_04775"
     CDS             complement(<1..214)
                     /locus_tag="VGN19_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEV7195234.1"
                     /translation="MVPDPVGSVLRFALFMFFVVLLGRLVLDWVQAFARDWRPRGVLL
                     ILAEVVYTITDPPLKALRRLIPPLTIG"
     gene            complement(270..749)
                     /gene="sepF"
                     /locus_tag="VGN19_04780"
     CDS             complement(270..749)
                     /gene="sepF"
                     /locus_tag="VGN19_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEV7195235.1"
                     /translation="MAGALRKTMVYLGLAEDDERYDGYDSYDYDESAHHAAPEERSAA
                     VTPLPQRTPVARVVRDVEVGALNRITTIHPRTYNEAKNIGESFREGTPVIMNLSDMDD
                     SDAKRLVDFAAGLVFGLHGSIERVTSKVFLLSPAHVEVASEEAGAPAPSTRGLFNQS"
     gene            complement(794..1513)
                     /locus_tag="VGN19_04785"
     CDS             complement(794..1513)
                     /locus_tag="VGN19_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEV7195236.1"
                     /translation="MSHPSNSSTRRTDLEHRLATVRSRIADACDTAGRDPDEVTLVAV
                     TKFFPAADLDLLVELGIDAVGENRDQEAAAKLASVRHRSQLTVHFIGQLQTNKAPSVV
                     RYADVIQSVDRPRLVAALDRAAAAAGVRPSVLVQVSLDPDPHGRGGVPMAQASALAEA
                     VGAAEHLRLRGVMAVAPLGVDPAVAFGRLREVAGGIREVHPDASWISAGMSGDLEAAI
                     AHGATHLRVGSAILGSRQSHG"
     gene            complement(1510..>1627)
                     /locus_tag="VGN19_04790"
     CDS             complement(1510..>1627)
                     /locus_tag="VGN19_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HEV7195237.1"
                     /translation="HDVAVQWIPGCSREDDRLYSYRRDGTTGRFAGVVVLAS"
BASE COUNT          255 a          565 c          570 g          237 t
ORIGIN      
        1 ttccgatggt caacggaggg atcagacgcc gaagcgcctt caggggcggg tcggtgatcg
       61 tgtagacgac ctcggcgagg atgagcagga ccccgcgcgg tcgccagtcc ctggcgaacg
      121 cctggaccca gtcgagcacc agccgcccca ggagcacgac gaagaacatg aagagggcaa
      181 accgcagcac gctgcctacg ggatcgggaa ccatgggatt accctcgcac gcgccgctgg
      241 gcctggggcc cctgggtcag ctcccgccgt cagctctggt tgaacagacc gcgcgtgctg
      301 ggggcggggg ccccggcctc ctcggaggcg acctccacgt gggccggcga caggagaaag
      361 accttggagg tgacccgctc gatggagccg tgcagcccga agaccagccc tgccgcgaag
      421 tcgaccaggc gcttggcgtc cgagtcgtcc atgtcggaca ggttcatgat caccggcgtt
      481 ccctcgcgga agctctcacc gatgttcttg gcctcgttgt aggtgcgcgg gtggatcgtc
      541 gtgatgcggt tcagcgcacc gacctcgacg tcacggacga cgcgagccac cggagtgcgc
      601 tgcggcagcg gggtgacggc agccgagcgc tcctcgggtg cggcgtggtg agccgactcg
      661 tcgtagtcgt agctgtcgta cccgtcatag cgctcgtcat cctcggcgag ccccaggtac
      721 accatcgtct tgcgtagcgc cccagccatg tgcgagctcc cttgagtccg tgcggtcgtc
      781 ttcgcgactg aagttacccg tgagactggc gagaaccgag gattgcgctg ccgacacgca
      841 ggtgtgtcgc cccatgggcg atggcggcct cgagatcgcc actcattccg gccgagatcc
      901 acgaggcgtc cggatggacc tcgcgtatgc cgccggccac ctcccgcagc cgcccgaagg
      961 cgacggcggg gtccacgccc aggggcgcca cggccatgac cccgcgaagc cgcaggtgct
     1021 ccgcggcgcc caccgcctcg gcgagggccg atgcctgcgc catcggcacc ccgccgcgac
     1081 cgtgcggatc ggggtcgagc gacacctgga cgagcaccga tgggcgcacc ccggcggccg
     1141 ccgccgcccg gtccagtgcc gccaccagcc gtggccggtc cacggactgg atgacatcgg
     1201 catacctcac gaccgacggg gccttgttgg tctggagctg gccgatgaag tgcacggtca
     1261 gctgcgaacg gtgccgcacg gaggccagct tggccgcggc ctcctggtcg cggttctccc
     1321 ccaccgcgtc gatgccgagc tcgaccagca ggtcgaggtc ggcggcgggg aagaacttgg
     1381 tgacggccac cagcgtgacc tcgtccgggt cgcgccccgc cgtgtcgcag gcgtccgcga
     1441 tccgacttcg aacggtggca agccgatgct cgaggtcggt cctgcgggtg gagctgttcg
     1501 aggggtggct cacgaggcga ggaccaccac gccggcgaac cggcccgtgg tgccgtcacg
     1561 tcggtaggag tacagccggt cgtcctcccg cgaacatccc ggaatccatt gcaccgcaac
     1621 gtcatgc
//
LOCUS       DASYFY010000244         4778 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_753636, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000244 DASYFY010000000
VERSION     DASYFY010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4778
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753636"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VGN19_04795"
     CDS             complement(<1..445)
                     /locus_tag="VGN19_04795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195238.1"
                     /translation="MGRASERVGIVGLAAFLAVDVALVVLALGSTRSPVSGAGLPVGG
                     ATTSVTGSATPSDKTTAAASGASSTTGASGPRIQIAPLTVGLVAVDQSTAMRFTVGTC
                     AKGGSVLEVSRDGGATWSARSTPFDSVVRIRVKPNQSLFSVGANRA"
     gene            complement(445..1038)
                     /locus_tag="VGN19_04800"
     CDS             complement(445..1038)
                     /locus_tag="VGN19_04800"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HEV7195239.1"
                     /translation="MSPPAQPARILTVCTGNICRSPFLERALQAELDQSWGPGAVTVR
                     SAGTGAMVGSAMDPSARALLESSGYSAEGFLARDLTEPLVAEADLVLTATRVHRGRVA
                     SLHPRALRYVFSFREFAELVSGVPDEQLTTAKPEAADHVRQVVTRAAAQRGARPPLED
                     EDADIVDPYRRPQDVFEQMSTQIMEALPAVARALGRH"
     gene            complement(1046..1543)
                     /locus_tag="VGN19_04805"
     CDS             complement(1046..1543)
                     /locus_tag="VGN19_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FABP family protein"
                     /protein_id="HEV7195240.1"
                     /translation="MVFNLDTDLPRELAPLAWLVGRWEGAGVVGYPTIESANFGQEVE
                     VSHDGRPFLQWQSRTWLLSESGEKVRPLATELGFWRPGENGEVELLLAHPTGIVELYY
                     GTAEPAKIQLRTDGVLRSPRAKEYNAATRLYGLVNSNLLWAMDMSAVGQSLQSHVSAE
                     LKRVA"
     gene            1665..2036
                     /locus_tag="VGN19_04810"
     CDS             1665..2036
                     /locus_tag="VGN19_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013839782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HEV7195241.1"
                     /translation="MSEPRTRLVVKVTCGVEAPERLNQALTVAATAVAGGVPVSLWLT
                     GEATWMAVPGRAENFDLPYAAPLAELRDAVLAEGVLTVCGQCAARRDLTEADLVAGAQ
                     IRGAAAFVEEVMAEGARSLVY"
     gene            complement(2048..2893)
                     /locus_tag="VGN19_04815"
     CDS             complement(2048..2893)
                     /locus_tag="VGN19_04815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195242.1"
                     /translation="MSELPDQAPAAAAPLTRRELREAASRRRFPRRVYPPGRLTVLTT
                     VAFAGLVALTGFAGPTLVAVAVALGGFVVAWGWPILLNLPSPRGTTGVLAAGTVLMAA
                     AVIVTPNDPFLRWVPAALAVSVVIAFLHQLLRRDGRPRLTESVAATTSGLAIISSGVA
                     LAPLPHVLNGAPTLAAAMAGLGVGALADPLIGARRGRQWALFIAMVLGGSAAVGVALV
                     AGHPRTGAAGLLGLMAAGVSHAARRILAVLPSAGSSRAQLALASSSAMLVGVVAYVLV
                     RRFVA"
     gene            complement(2910..3173)
                     /locus_tag="VGN19_04820"
     CDS             complement(2910..3173)
                     /locus_tag="VGN19_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEV7195243.1"
                     /translation="MPGGEQAQVGVTVRYWAGARAAAGVDEDSFDHCPTVGSATAAVV
                     ARHPALEPIVRVSTLLLDGRAVTPQTSLSSGAVLEVLPPFAGG"
     gene            3277..3981
                     /locus_tag="VGN19_04825"
     CDS             3277..3981
                     /locus_tag="VGN19_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195244.1"
                     /translation="MARLLLLTNSLAPSAEVLPALGLLSHHVRILPAEPTALVDAPAC
                     DAVLLDARRDLAVARSLCRVLRISGMSVPLIAILTEGGLAGLTAEWGVDEALLESAGP
                     AEVEARLRLAAGRLQGEAEPVEVQITSGEVTIDEATYSARVRGRLLDLTYKEFELLKY
                     LAQHPGRVFSRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGSEHEVLIGTVRNVGYR
                     FVPAEDAPAQDSPVDA"
     gene            4026..>4778
                     /gene="mshD"
                     /locus_tag="VGN19_04830"
     CDS             4026..>4778
                     /gene="mshD"
                     /locus_tag="VGN19_04830"
                     /EC_number="2.3.1.189"
                     /inference="COORDINATES: protein motif:HMM:TIGR03448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035447 - mycothiol synthase activity
                     [Evidence IEA];
                     GO_process: GO:0010125 - mycothiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol synthase"
                     /protein_id="HEV7195245.1"
                     /translation="MASPFLTNRLRLTPGDVEGVRNLERRARATDGVGPLSEQAVLWL
                     ADTSGRVRHHLAYAADALVGYAQVADGDDAEGDNSDDGGDADAATAELVVDPDHRRRG
                     LGRQLADAVAAHAPPSRLWAHGNLEAARALAKSAGWVPVRELHKLGRALSASEAQAAA
                     SALPPGFAARAFIPGRDEQAWLEVNAAAFAHHPEQGRLTLADLLEREQQPWFDPQGLV
                     LVETLETPRQVVAFHWTKVDPTERSSVDPTQGA"
BASE COUNT          761 a         1692 c         1675 g          650 t
ORIGIN      
        1 tggcccggtt ggccccgacc gagaacagcg actggttggg cttcacgcgg atgcggacga
       61 cggagtcgaa cggggtggaa cgcgcgctcc aggtggcacc gccgtcacgg ctgacctcca
      121 agaccgagcc gcccttggca caggtcccca cggtgaagcg catcgcggtt gactggtcga
      181 cagccacgag gccgacggtg agcggcgcga tctggatgcg cgggccagag gccccagtgg
      241 tggacgacgc gccgctagcg gccgccgtgg tcttgtctga gggggtggca gaaccggtga
      301 cgctcgtggt ggcgccaccg accggcaagc cagccccgct cacagggctg cgcgtgctgc
      361 ccagggccag caccacaagc gcgacgtcca cggccaggaa ggccgcgagc ccgacgatcc
      421 cgacacgctc gctggctcgt cccatcagtg cctccccaac gctctcgcca ctgccggcag
      481 ggcttccatg atctgggtgg acatctgctc gaaaacgtcc tgcggacgtc ggtacggatc
      541 gacgatgtcg gcgtcctcgt cttccaacgg cggccgggcc ccgcgttgag ctgccgcccg
      601 ggtgaccacc tgacgcacgt ggtcggcagc ctccggcttc gcggtggtca gctgctcgtc
      661 cggcacgccg gacacgagct cggcgaactc acggaaggag aacacataac gcaaggctct
      721 ggggtgaagg cttgcgaccc ggccccggtg cacgcgcgtg gcggtgagca ccaggtcggc
      781 ctcagccacc agaggctcgg tgagatcgcg agccaggaac ccctcggcgc tgtacccgct
      841 ggactcgagc agggcacgcg ccgatgggtc catggccgag ccgaccatcg cgccggtgcc
      901 cgcactgcgc acggtcacgg cgccgggacc ccaggactgg tcgagctcag cctgaagggc
      961 tcgctcaagg aacggggagc ggcagatgtt gccggtacag acggtcagga ttcgcgcggg
     1021 ttgcgcaggt gggctcacgc gaggcctatg cgacgcgctt gagctcagcc gagacgtggc
     1081 tctgcagcga ctgacccacc gccgacatgt ccatcgccca cagcaggttc gagttcacca
     1141 ggccgtagag ccgggtcgcc gcgttgtact ccttggcccg tgggctgcgc aggaccccgt
     1201 ccgtacggag ctggatcttg gccggctcgg ccgttccgta gtacagctcc acgatgccgg
     1261 tggggtgagc gagcagcagc tccacctcac cgttctcgcc gggtcgccag aagcccagct
     1321 cggtcgcgag cgggcgcacc ttctcgccgg actcgctcag cagccaggtg cggctctgcc
     1381 actgcaggaa cggacgcccg tcatggctga cctcgacctc ctggccgaag ttcgccgact
     1441 cgatggtcgg gtagccgacg actccggcgc cctcccaccg gccgacgagc cacgccaacg
     1501 gagccagctc gcgtgggagg tcggtgtcga ggttgaagac catcagcgtg gggtcttcac
     1561 caggcggtac accacgaaac cagcgaacca ggtcacgacg acgacggtca gagccagcag
     1621 ggacaggaag aacgtgtgca cgggcgagat cgtagcctgt gaccatgtct gaaccccgca
     1681 cccgactcgt cgtgaaagtc acttgcggtg tcgaggcacc cgagcggctc aaccaagccc
     1741 tcaccgtggc ggccactgcg gtggccggcg gagtcccggt gagcctgtgg ctcaccggcg
     1801 aagcgacctg gatggccgtc ccggggcggg ccgagaattt cgacctgccg tatgccgcgc
     1861 cgctggcgga gctgcgggac gccgtcctcg cggagggagt gctgaccgtg tgcggtcagt
     1921 gcgcggcgcg gcgcgacctc acggaggcgg atctggtggc gggtgcgcag atccggggtg
     1981 cggcggcctt cgtcgaagag gtgatggccg agggcgcccg gtccctcgtg tactgaccgt
     2041 caggcactca ggccacgaag cgacgaacca gcacgtacgc gacgactccg accagcatcg
     2101 ccgaggatga ggccagcgcc agctgcgccc ggctggaacc cgcagagggc aggactgcca
     2161 ggatccgccg cgccgcatgc gagacccccg cggccatcaa ccccagcagg ccagctgccc
     2221 cggttcgtgg gtggccggcc accagcgcga ctcccacggc agccgaaccc ccgaggacca
     2281 tcgcgatgaa cagcgcccac tgacgtcccc tgcgcgcgcc gatcaggggg tcggccagcg
     2341 cacccacgcc caggccggcc atggcggcgg cgagggtcgg agcaccgttg agcacatgcg
     2401 gcaaaggcgc gagcgcgaca cccgaggaga tgatggccag tccgctggtc gtggcggcca
     2461 cggactcggt cagccggggt cggccatcac ggcgcagtag ctggtgaagg aaggcgatga
     2521 cgacggacac ggccaaggcc gcgggcaccc atcgcaagaa ggggtcgttc ggagtgacga
     2581 tgacggcggc ggccataagc acggtgccgg cagcaagcac gccggtcgtt ccgcgcgggc
     2641 tcggcaggtt caggaggatc ggccaccccc aagccacgac gaaaccgccc aacgcgacgg
     2701 cgaccgccac caaagtgggt ccggcgaagc cggtgagggc gacgagaccg gcgaacgcga
     2761 ccgtcgtcag gaccgtcagg cgtccgggtg gatagacccg gcgcgggaac cgtcggcgag
     2821 aggccgcctc ccggagctca cgccgggtga gcggcgcggc ggcggctggc gcctggtccg
     2881 gtagttccga cacaggcggc atcctcccat cacccaccgg caaagggggg caggacctcc
     2941 aggaccgccc cggatgacag ggacgtctgc ggcgttacgg cacgtccgtc gagcagcagg
     3001 gtgctgacgc ggacgatggg ttcgagcgcg gggtgtcggg ccacgaccgc ggccgtggcg
     3061 gatcccaccg tcgggcagtg gtcgaaggag tcctcgtcga cacccgccgc cgcccgggcg
     3121 ccggcccagt agcgcacggt gacaccgacc tgggcctgct caccacccgg cataccgcct
     3181 cctctgccca ccttcggcac aacacatcgt gagacaacga tctcatcatg cgttcgtcac
     3241 cgcgtgtgga cccccagcaa cgtatccttc atgggcatgg cccgtctgct gctgctcacc
     3301 aactctctgg cgccgagcgc cgaggtgttg ccggcgttgg gcctgctcag ccaccacgta
     3361 cggatcctcc cggccgagcc cactgcactg gtggacgccc ctgcgtgtga tgccgttctg
     3421 ctcgacgccc gccgagacct ggccgtcgct cgttcactgt gtcgcgtcct gcggatctcg
     3481 gggatgtcgg tgccgctcat cgcgatcctg accgagggcg gtctcgccgg tctcacggcc
     3541 gagtggggcg tggacgaggc actcctggag tccgccggtc ccgccgaggt cgaggcacgc
     3601 cttcgcctcg ccgcggggcg cctgcagggc gaggccgagc cggtggaggt ccagatcacc
     3661 tccggtgagg tcacgatcga cgaggccacc tactccgcgc gggtccgggg acgccttctc
     3721 gacctcacgt acaaggagtt cgagctgttg aagtacctcg cgcagcaccc cgggcgggtg
     3781 ttcagccgcg cccagctgct gcaggaggtc tggggttacg actactacgg cggcacccgc
     3841 accgtcgacg tccacgtgcg gcgcctgcgc gccaagctgg gctccgaaca cgaggtgctg
     3901 atcgggaccg tgcgcaacgt cggctaccgc ttcgtgcctg ccgaggatgc cccggcgcag
     3961 gacagcccgg tcgacgcctg accgcaagaa agggggatgg accgacgcgt ggtccaatgc
     4021 ttgccgtggc ctcacctttc ctgaccaacc gtttgcgcct gaccccgggg gatgtcgagg
     4081 gcgtccgcaa cctggagcgt cgggcgaggg caaccgacgg tgtcggcccc ctgtcggaac
     4141 aggccgtgct ctggctcgcc gacaccagcg gtcgagttcg gcatcacctc gcgtatgccg
     4201 cggacgccct cgtgggctac gcccaggtcg ccgatggtga cgacgccgag ggtgacaaca
     4261 gtgacgacgg tggtgacgcc gacgcagcga ccgccgagct ggtcgtggat cccgaccacc
     4321 gccgccgtgg ccttggtcga cagctagccg acgccgtcgc ggcgcacgcc ccgccatcgc
     4381 gcctctgggc ccacggcaac ctcgaggccg cgagggccct ggccaagagc gccggctggg
     4441 tccccgtccg tgagctgcac aagctcggcc gagccctgtc cgcttctgag gcgcaggccg
     4501 cggccagcgc gctgccgccg gggttcgcgg ctcgcgcctt cattcctggg cgcgacgagc
     4561 aggcatggct cgaggtcaac gccgctgcct tcgcccacca ccctgagcaa ggccggttga
     4621 cgctggcgga cctgctcgaa cgtgagcagc agccctggtt cgacccccag ggcctggttc
     4681 tcgtcgagac cctggagacc ccccgccaag tcgtcgcctt ccactggacc aaggtcgacc
     4741 ccaccgagcg ctcctcagtg gacccgaccc agggtgcc
//
LOCUS       DASYFY010000245         2879 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_701091, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000245 DASYFY010000000
VERSION     DASYFY010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701091"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1188)
                     /locus_tag="VGN19_04835"
     CDS             complement(<1..1188)
                     /locus_tag="VGN19_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019134968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195246.1"
                     /translation="MSDVISSTSQTYVDRNAPLLEIKDLDVAFRGPDGKDIPAVRGAN
                     LVVYPGQTVAIVGESGSGKSTTAHAVIDLLPGSGHITGGQILFEGRDITKMRRREAEE
                     LRGEGIGLVPQDPMSNLNPVWKIGYQVSEALKANGKAKGSDAKRQAAQLLTEAGLGDA
                     DRRLKQYPHEFSGGMRQRTLIAIGLASRPRLLIADEPTSALDVTVQRQILDHLETLTD
                     ELGTAVLLITHDLGLAAERAEQLVVMYRGRVVESGPARQILADPQHPYTRRLVASAPS
                     LAARRAGTAAARAEVVERAAQVADAAAHEGGTLAAEAPEHVEVPVTNDVLRIENLTKV
                     YKLRGAGRNTGEFKAVDDVSFNIRRGTTTAVVGESGSGKSTLAQMVLRLQEPTSGRVL
                     FDGV"
     gene            complement(1185..2135)
                     /locus_tag="VGN19_04840"
     CDS             complement(1185..2135)
                     /locus_tag="VGN19_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011775454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195247.1"
                     /translation="MSETTLWATQSHFVADLEETPLQVTDRLDESAPPGGLWLEAWRI
                     LRRRPLFIVSSVIIVLLLLVAFFPGVFASKSPTFCQLQDSLAGSRSGHPFGFDIQGCD
                     IYSRVIHGARASISVGVLTTLLTVVFGGVVGALAGFYGGWLDSFLARITDIFFSVPLL
                     LGAITCMQAFTDKTVWVVAIVLAVFGWPQVARIMRGSVISVRSAEYVTAATALGASRM
                     KVLLRHVLPNAIPPVIVIATVSLGAFIGAEATLSFLGIGLNPATTVSWGGDISQAQNV
                     LRSNPSVLLYPAAALSLTVLSFIMLGDAVREALDPKSRKR"
     gene            complement(2128..>2879)
                     /locus_tag="VGN19_04845"
     CDS             complement(2128..>2879)
                     /locus_tag="VGN19_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007270406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195248.1"
                     /translation="QPFFVQYLDYLKGIIHWDFGTSYSGRPVSSVMAEAFPVTIRLAL
                     LALLFEGVLGIGAGLIAGLRRGGIFDASLLLLSLVVIAVPIFVIGFFVQIVFGVKLGW
                     INPTVGPEATWGELIVPAMVLGSVSFAYVLRLTRDSITENLSADWVRTATAKGLSRRR
                     VVSTHVLRNSLIPVATFLGADLGSLMAGAIITEGIFNIPGVGHALYQAIVRGEGATVV
                     SIVTVLVLIYIATSLVVDLLYAVLDPRIRYV"
BASE COUNT          506 a          944 c         1027 g          402 t
ORIGIN      
        1 cacgccgtcg aacagcaccc gccccgacgt cggttcctgc agccgcagca ccatctgggc
       61 cagcgtggac ttgcccgagc cggactcgcc caccaccgcg gtggtggtcc cccgtcggat
      121 gttgaagctc acgtcgtcga cggccttgaa ctcgccggtg ttccggcccg cgccgcgcag
      181 cttgtagacc ttggtcaggt tctcgatgcg gaggacgtcg ttggtcacgg ggacctcgac
      241 gtgctccggc gcttccgccg ccagggtccc gccctcgtgc gcggcggcat cggccacctg
      301 tgccgcccgc tcgaccacct cggcccgcgc cgcggccgtt ccggcgcggc gggccgccag
      361 ggacggtgcc gaggcgacga gccggcgggt gtaggggtgc tgggggtcgg cgaggatctg
      421 acgggccgga ccggactcca cgacccggcc gcggtacatc accaccagct gctcggcccg
      481 ctcggcagcc agaccgaggt cgtgcgtgat cagcagcacc gcggtgccca gctcgtcggt
      541 cagggtctcg aggtgatcga ggatctgccg ctggaccgtg acgtcgaggg ccgaggttgg
      601 ctcgtcggcg atgagcagcc tcggtcgcga ggccagtccg atggcgatca gggtgcgctg
      661 gcgcataccg ccggagaact cgtgcggata ctgcttgaga cgccggtcgg cgtcgccgag
      721 acccgcctcg gtcagcagct gggccgcctg gcgcttggca tcggagcctt tggcctttcc
      781 gttggccttc agggcctcgg agacctggta cccgatcttc cagaccgggt tgaggttgga
      841 catcgggtcc tgcggcacca gcccgatgcc ttccccgcgc agctcctcgg cctcgcgtcg
      901 gcgcatcttg gtgatgtcgc gcccctcgaa gaggatctgc ccacccgtga tgtggccgct
      961 cccgggcagc aggtcgatga ccgcgtgagc ggtggtcgac ttgcccgatc cggactcacc
     1021 gacgatcgcg acggtctgac cgggatagac gacgaggttc gccccgcgca cggccgggat
     1081 gtccttgccg tcgggccccc ggaaggcgac gtcgagatcc ttgatctcca ggagcggggc
     1141 gttgcggtcc acgtaggtct ggctggtcga ggaaatgacg tcgctcatct cttgcgtgac
     1201 ttgggatcga gggcctcacg cactgcgtcg cccaacatga tgaagctcag caccgtgagg
     1261 gacaacgccg cggccgggta gagcagcacc gaggggttgg agcgaagcac gttctgcgcc
     1321 tgactgatgt cgccacccca ggagacggtc gtcgccgggt tcaggccgat acccaggaac
     1381 gacagggtcg cctcggcacc gatgaaggcg ccgagcgaga cggtcgcgat gacgatgacc
     1441 ggcgggatcg cgttcggcag cacgtgccgg agaagcacct tcatccggga cgcccccagc
     1501 gcggtggccg ccgtcacgta ctcggcactc cggaccgaga tgaccgagcc gcgcatgatg
     1561 cgcgccacct gcggccaacc gaacacggcg agcacgatcg cgacgaccca caccgtcttg
     1621 tcggtgaagg cctgcatgca ggtgatggct ccgaggagca gcggcaccga gaagaagatg
     1681 tcggtgatac gggccaggaa cgagtccagc cacccgccgt agaagccggc cagcgcgccg
     1741 acgaccccac cgaagaccac ggtgagcagc gtggtcagca cacccacgct gatggacgca
     1801 cgggcgccgt ggatgacccg ggagtagatg tcacagccct ggatgtcgaa gccgaacgga
     1861 tgacccgagc gggagccggc caggctgtcc tggagctggc agaacgtggg gctcttggag
     1921 gcgaacactc ccgggaagaa ggccacgagc aggagcagca cgatgatcac cgaggagacg
     1981 atgaacagcg ggcggcggcg caggatgcgc caggcctcca gccagagacc gcccggaggg
     2041 gctgactcgt ccagccggtc ggtcacctgc agcggcgtct cttcgaggtc ggcgacgaag
     2101 tgtgactgcg tggcccacag agtggtctca gacatagcga atcctcgggt ccaggacggc
     2161 gtagagcaga tcgaccacca ggctggtcgc gatgtagatg agcacgagca ccgtgacgat
     2221 cgagacgacg gtggcaccct cgccacgcac gatcgcctgg tagagggcgt ggccgacgcc
     2281 ggggatgttg aagatgccct cggtgatgat cgcgcccgcc atgagcgaac cgaggtccgc
     2341 gccgaggaag gtcgccaccg gaatcagcga gttgcgcagg acgtgggtgc tgaccacccg
     2401 gcggcgggac agccccttgg ccgtggcggt gcgcacccag tcggcgctga ggttctcggt
     2461 gatcgagtcg cgcgtcagcc gcaggacgta ggcgaaggag accgagccga gcaccatggc
     2521 gggaacgatc agctcgcccc aggtcgcctc ggggcccacc gtggggttga tccagccgag
     2581 tttcaccccg aagacgatct gcacgaagaa accgatgacg aagatcggga cggcgatgac
     2641 gacgaggctg aggagaagca gcgaggcgtc gaagatgccc ccgcggcgca gcccggcgat
     2701 caggccggcg ccgataccca ggacaccctc gaacagcagg gccagcaggg ccagccggat
     2761 ggtgaccggg aaggcctcgg ccatcacgga ggagaccgga cgtcccgagt aggacgtgcc
     2821 gaagtcccag tggatgatcc ccttgaggta atccaggtac tgcacgaaga acggctgat
//
LOCUS       DASYFY010000246         1654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1173870, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000246 DASYFY010000000
VERSION     DASYFY010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173870"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VGN19_04850"
     CDS             complement(<1..485)
                     /locus_tag="VGN19_04850"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7195249.1"
                     /translation="MELAEFKLSVDRWLDEHAAELQPEFEGIGTLDDQMAQLRKVMRL
                     GYDAGFTRWGWPERVGGLGGSNLLRAYLGEALTARDLVEPGNYSMPEVLAPTMIDFAP
                     AALAAAMVPRLLSGDEIWCQGFSEPGTGSNLGSLACRATKDGDGWRVNGQKVWTSLAQ
                     YA"
     gene            complement(504..947)
                     /locus_tag="VGN19_04855"
     CDS             complement(504..947)
                     /locus_tag="VGN19_04855"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEV7195250.1"
                     /translation="MDPARTADIIELEQVLARYAVGMTRDDVDAVMEVFTPDGTYSAF
                     GTTYALEDFPTLVAAAPKGLFLTGTPVLDLDGDSGTGTGYQTLCFVEQTTHDMRIGWY
                     TDTYRKTGNGWRVQTRSMTFLRRSGARDSGKAHDPGRPMPSSSDA"
     gene            1127..>1654
                     /locus_tag="VGN19_04860"
     CDS             1127..>1654
                     /locus_tag="VGN19_04860"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195251.1"
                     /translation="MTSTDDATAAAGSDPPVRRRDLAVARSLDSARVRSEGRVQRFLD
                     AGFELLASAESGRDFTVQEVVDRSGQSLRSFYQYFAGKHELLLALFDEAIRSTADRLE
                     DQLAKENTPLERLHRFVVEYYRMCLPAPKGRASKNNPTPVLAEFCHQLLTAHQEEASR
                     AFVPLVALLEKALADA"
BASE COUNT          257 a          575 c          551 g          271 t
ORIGIN      
        1 gcgtactggg ccaagctcgt ccacaccttc tggccgttca cgcgccagcc gtcaccgtcc
       61 ttcgtggcgc ggcaggccag agagcccagg ttgctccccg tccccggctc cgagaagccc
      121 tggcaccaga tctcgtcgcc cgacaggagc cgcggcacca tggcggcggc aagcgctgcg
      181 ggcgcgaagt cgatcatggt cggggcgagc acctcgggca tggagtagtt acccggttcg
      241 acgaggtcgc gcgccgtcaa agcctcgccc aggtacgcgc gcagcaaatt ggagccaccc
      301 agaccaccga cgcgttcggg ccagccccag cgcgtgaacc cggcgtcgta gccgagtcgc
      361 atgaccttgc gcagctgcgc catctggtcg tcgagcgtcc cgatgccctc gaactcgggc
      421 tggagttcgg cggcgtgctc gtcgagccaa cggtcgaccg acagcttgaa ctcggccagc
      481 tccaccgcgt ccccctcgcg ggcctaggcg tccgaggaag acggcatcgg gcggcccggg
      541 tcgtgcgctt tgcccgagtc gcgtgcccca ctgcgccgca agaaggtcat cgagcgcgtc
      601 tgcacccgcc agccgttgcc ggtcttgcgg tacgtgtcgg tgtaccaccc gatgcgcatg
      661 tcgtgcgtcg tctgttcgac gaaacagagg gtctggtacc ccgtgcccgt gcccgagtcg
      721 ccgtcgaggt cgaggaccgg ggtgccggtc aggaagagac ccttgggggc ggcggccacc
      781 agggtgggga agtcctcaag cgcgtaggtc gtgccgaagg cgctgtaggt gccgtcgggg
      841 gtgaacacct ccatcaccgc gtccacgtcg tcgcgggtca tgccgaccgc gtaccgggcc
      901 aggacttgtt cgagctcgat gatgtcagcc gtgcgagccg ggtccatgcg cggtcacgat
      961 aacagcattc tcaaaatctg ccatgcgctg tgcaggcacg gcgacgagca ccctcgacag
     1021 ggcatggacg cggtacggga accacctttg cagattttct tcgcaccgtc agctccgtgg
     1081 gggagagtct cgctctcaat tgggggtaac ccgatacact cagtcgatga cctccaccga
     1141 cgacgccact gccgctgcgg gatcggatcc cccggtgcgc cggcgggatc tggcggtcgc
     1201 ccgctcgctc gactcggctc gcgtccggag cgagggccgg gtgcaacgct tcctcgacgc
     1261 cggcttcgag ctcctggcca gcgccgagtc tggccgtgac ttcactgtgc aggaggtggt
     1321 ggaccgctcc ggacagtcac tgcgcagctt ctaccagtac ttcgccggca agcacgagct
     1381 gctgctggcg ctcttcgacg aggcgatccg ctcgacggcc gaccgcctcg aggaccagct
     1441 ggccaaggag aacaccccgc tcgaacggct gcatcgcttc gtggtcgagt actaccggat
     1501 gtgcctgccg gctcccaagg gccgcgcgtc gaagaacaac cccaccccgg tcctcgccga
     1561 gttctgccac caactgttga ccgcccacca ggaggaggcg tcgcgggcct tcgtgcctct
     1621 ggtcgcgttg ttggagaagg ccttggccga tgcc
//
LOCUS       DASYFY010000247         8802 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1384939, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000247 DASYFY010000000
VERSION     DASYFY010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8802
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1384939"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /gene="msrA"
                     /locus_tag="VGN19_04865"
     CDS             <1..498
                     /gene="msrA"
                     /locus_tag="VGN19_04865"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007923948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEV7195252.1"
                     /translation="GGLTPNPTYEETCTGLTGHAETVLVAYNPQETSPELLLKEFWEN
                     HDPTQGNRQGNDVGTAYRSAVYWTTEGQRLSAEATREAFQKVLTDNGFGTITTELRAA
                     EDAGTFYYAEDYHQQYLFKNPGGYCNHGPNGMTCPVGLVRQDQLPSQQSVLPADGSGI
                     VQQER"
     gene            complement(483..941)
                     /locus_tag="VGN19_04870"
     CDS             complement(483..941)
                     /locus_tag="VGN19_04870"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEV7195253.1"
                     /translation="MPRFRAAAALCLMSLAVGGGLVVAPGATASRPPVKISFVQYDSP
                     GRDTGSNASLNSEYVLITNTTTTNRALTGWTLRDKAAHIYRFPAFVLKAKASVYVRTG
                     KGIATASNRYYNLAWYVWNNTGDTAYLRDGRGVLQYSCTWTSRGLGYRSC"
     gene            1245..1535
                     /locus_tag="VGN19_04875"
     CDS             1245..1535
                     /locus_tag="VGN19_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195254.1"
                     /translation="MGPNRPGRGSHIATASFMVGSAVRGLGVGRRLAEEMLRWAREEG
                     YAAVQFNAVVETNLGAVRLWQDLGFEIIGTVPAAFDTRRHGHVGLHVMLLRL"
     gene            complement(1532..2092)
                     /locus_tag="VGN19_04880"
     CDS             complement(1532..2092)
                     /locus_tag="VGN19_04880"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7195255.1"
                     /translation="MIDPDSPYTIVVGVSATSKSPAALHWAAELAALRGGRVVAVRAW
                     RPTPPQTGSRVTASPVIEDAEAAEAEELAALRADVAEVLGGTHGVQVRLVQGGRRRAL
                     VKTSEEADLLVVDAPRRLDLSSGPGFAQRLVYAAKCPVVVMPPSVSGTPKTRLERAAG
                     AVGRTMVDAAGRAGRPGLSHPPTGGA"
     gene            complement(2104..3570)
                     /locus_tag="VGN19_04885"
     CDS             complement(2104..3570)
                     /locus_tag="VGN19_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012246058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195256.1"
                     /translation="MTTAAAESGGGLRSLVPARLDRLPWAKFHWMVVVGLGVSWILDG
                     LEIQLVSTAGFQKSLGMSSTEVGLAGTVYLIGQVVGALTFGRLTDRWGRKKLFIITLA
                     IYLVGSGVAGLAWTPWFLYLWRFVAGLGIGGEYTAINSAIDELIPAKYRGRVDIAVNG
                     TYWAGALLGAGASFYLLDTSRVPENLGWRIAFFIGPVMGLVIIWVRRHIPESPRWMVT
                     HGQGEEAERIVDGIERTLEEQGASLRPVDESKAMVVKPKERLPFSDLMEVFFKRYPSR
                     TALGLTMMITQSFLYNAIFFTYALVLQNFYHLDKSAAAVYFIPFAIGNLLGPLLLGHL
                     FDTIGRRKMIFTTYLLAGLVLLVSAFLFKQGSLNATTHTIFWCVSFFFASAGASAAYL
                     TVSEIFPLEVRGQAISYFFAIGQVVGALGPVLFGALVGKGTERTPLFWGYVLASAIMI
                     VGGIVAVAIGVDAEGKGLEDIADPLSRVSEPPLEPVRA"
     gene            3732..4622
                     /locus_tag="VGN19_04890"
     CDS             3732..4622
                     /locus_tag="VGN19_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7195257.1"
                     /translation="MRIVSLLPSTTEILFVIGAGDHVVGVTVECDTPVEARERAIVST
                     TTIPGGLTSREIDAFVSAAMAAGEDLYHLDQGALSRLDADLVVTQDLCAVCAVDVSVV
                     DEALDYLGCRADVLTIDPHTLADVLDSVVQLGQASGTERAATALVKSLTARLYAVEQV
                     VRDLPRPRALVLEWTDPPFAPGHWVPEMVEAAGGASALGRKGEKSVRIRWDDVRGCGA
                     DVVVCAPCGYDLEGAAALGEALLASGELPPGIPVWAVDANASFARPGPRLVDGVEALA
                     GILHPDAAQPPNPMMARRLR"
     gene            complement(4674..6050)
                     /locus_tag="VGN19_04895"
     CDS             complement(4674..6050)
                     /locus_tag="VGN19_04895"
                     /EC_number="4.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004122 - cystathionine beta-synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019344 - cysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-synthase"
                     /protein_id="HEV7195258.1"
                     /translation="MKYAEHIADLVGNTPLVKLNAVTEGVAATVLAKIEYLNPGGSVK
                     DRIALKMIEAAEASGELKPGGTIVEPTSGNTGVGLALVAQRRGYSCVFVCPDKVSQDK
                     RDVLKAYGAEVVVCPTAVAPDHPDSYYSVSDRLVKEIDGAWKPNQYANQNGPASHYES
                     TGPEIWNDTDGRVTHFVAGVGTGGTITGTGRYLREVSADREGGRVQVIGADPEGSVYS
                     GGTGRPYLVEGVGEDFWPTAYDPDVVDDVIAVSDADSFHMTRRLAKEEGLLVGGSCGM
                     AVVAALRAAKDLPAEAVLVVLLPDSGRGYMSKIFNDDWMSSYGFMKSVDQATVGEVLH
                     RKAGDLPALVHTHPTETVRDAIEILHEYSVSQMPVVKAEPPVMAGEVAGSVSERALLE
                     ALFNGSAHLTDPVGKHMEPSLPLVGAGEPVASARAELEKHDAIMVVEDGKPVGVLTRA
                     DLLIALVN"
     gene            6163..7350
                     /locus_tag="VGN19_04900"
     CDS             6163..7350
                     /locus_tag="VGN19_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEV7195259.1"
                     /translation="MAVSAVGVTSTSERKGFPMGRARRARKIAATAAYGGGGLAAGIG
                     TLGVLGYGLLKAEAKVARRLVGQPFDGAPDDDGTYGAGIGEPVEFVVLGDSSAAGMGA
                     DHRYQTVGAIIANGVSALTGRPVHLTNCAVVGSESSGLELQLANALDQVPSPHVAVIM
                     IGANDVTHRIDKSIAVRHLGDTVRRLRDLGAEVVVGTCPDLGTIQPIPQPLRLIGRRW
                     SRDMAAAQTVAVVEAGGRTVSLGDLLGPEFAQRPHEMFSADRFHPSPAGYARAAAALL
                     PSVYAALGVWEGSARDEPVPDTRRGEGVGPVAIAAEYAVRDPGTEVSATEIAGQSRGP
                     RGRWAVLLRRPHKAVPDRQDEVVGVTEAASIAEVGRSALAPDSESKATPADPATRHTI
                     EAD"
     gene            7392..8615
                     /locus_tag="VGN19_04905"
     CDS             7392..8615
                     /locus_tag="VGN19_04905"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEV7195260.1"
                     /translation="MTEAVIVSTARTPIGRAFKGSLKEMRPDDLSVQVIAAALAKIPA
                     LDPTLVEDLYWGCAEPSGRQGSNLARVIAVLAGFDGLPGSTINRFCASSVQTTRMAFH
                     AIKAGEGDIFISGGVECVSQYSNWAGAGGSAGDDQNPLFAPAQARSVQTAKTNETWTD
                     PRANDLLPDVYLTMGQTAENVATLRGISRERQDEWGVSSQNRAEKAIANGFFEREIAP
                     VTLADGTVVSKDDGPRAGVTVDGLKGLNPVFREQGTITAGNCCPLNDGAAALVVMSDT
                     KAKELGLTPLARVVSTGVSGLSPEIMGLGPVEASRQALARAGMTIGDLDLYEINEAFA
                     AQVLPSADDLGMDFDKLNVHGGAIALGHPFGSTGARITTTLLNGLEARDGQFGLETMC
                     VGGGQGMAIIYERLS"
     gene            complement(8608..>8802)
                     /locus_tag="VGN19_04910"
     CDS             complement(8608..>8802)
                     /locus_tag="VGN19_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195261.1"
                     /translation="PVDHALGCMPRVRRLVDDLAESDVPDLGPAVVMDQLTVVVYDAC
                     ESGGQDDLTARLAELRRDLS"
BASE COUNT         1396 a         3038 c         3033 g         1335 t
ORIGIN      
        1 ggtggcctca cgcccaaccc cacctacgag gagacctgca cgggcctgac gggccacgcc
       61 gagacggtgc tcgtggcgta caacccgcag gagacctcac ccgagctgct gctcaaggag
      121 ttctgggaga accacgaccc cacccagggc aaccggcagg gcaacgacgt cggcacggcc
      181 taccggtcgg cggtgtactg gacgaccgaa gggcagcgac tgtccgccga ggccacccgc
      241 gaggccttcc agaaggtgtt gacggacaac ggttttggca ccatcaccac cgagcttcgt
      301 gccgcggagg acgcgggtac cttctactac gccgaggact accaccagca gtacctgttc
      361 aagaaccccg gcggctactg caaccacgga cccaacggca tgacctgccc cgtcggactc
      421 gtccgccagg accagctgcc ctcccagcag agcgtcctgc cggccgacgg gagcggaatc
      481 gttcagcagg agcggtagcc cagaccccga gaggtccacg tgcagctgta ctggagaact
      541 ccgcggccgt cgcgcagata tgcggtgtct ccggtgttgt tccagacgta ccacgcgagg
      601 ttgtagtagc ggttgctcgc ggtcgcgatg cccttgcccg tgcggacgta gacggacgcc
      661 ttggccttga gaacaaaggc cgggaaccga tagatgtgag ctgctttgtc cctcagcgtc
      721 cagccggtga gcgcgcggtt cgtcgtcgtg gtattcgtga tcagaacgta ttcgctgttc
      781 aggctggcat tgctcccggt gtcgcgcccg ggcgagtcgt actgcacgaa ggagatcttc
      841 acgggcggcc tgctggccgt ggcgcccggg gcgaccacta acccaccgcc gaccgcgagg
      901 gacatcaggc acagcgctgc agcggcacga aatcgaggca tgaggcgcac gctaaccagt
      961 ccggaaggcc tggcgaatca gccgaatggg ctaaatcgga catcgttctg tctgcggtca
     1021 ccttcagccc gccttaccat cggccgcgtg ctgatccgcg acgcagagcc aggtgacctc
     1081 gagtcgttcg cgccgatttt tcggcagatc gtcgacgacg gcgagaccta cgcctaccca
     1141 gaaggcttgt cggacaccca gatccgcggc ctctggttcg agcagccgcc tgggcgcacc
     1201 gtggtcgcac tcgacgaggg ggcgccctcg tcggcggcgc gaaaatgggc ccgaaccgtc
     1261 ccggccgggg ctcgcacatc gccaccgcga gcttcatggt gggttcggcc gtgcgaggcc
     1321 tgggcgtcgg tcgccggctc gccgaggaga tgctgcggtg ggctcgcgag gaggggtatg
     1381 cagcggtgca gttcaacgcc gtcgtcgaga ccaacctcgg cgcggtgcgg ctctggcagg
     1441 acctgggctt cgagatcatc ggaacggtcc cggcagcctt cgacacccga cgtcacgggc
     1501 acgttgggct gcacgtgatg ctgctgcgtc tctaagcgcc cccagtcgga ggatggctga
     1561 ggccgggtct ccccgcgcgg cccgccgcat cgaccatggt gcgcccgact gccccagccg
     1621 cacgctcgag gcgcgtcttg ggtgtgcccg agacgctggg cggcatcacg acgaccgggc
     1681 acttcgcggc atacacgagc cgttgggcga accccggacc cgacgagagg tcgagccgcc
     1741 gcggagcgtc gacgaccaag aggtcggcct cctcggaggt cttgaccaag gcgcgccggc
     1801 ggccgccctg aaccaaccgc acctgcactc cgtgggtgcc gccgagcacc tccgcgacat
     1861 cggcccgcag ggcggcgagc tcctccgcct cggctgcctc ggcgtcctcg atgaccggcg
     1921 acgcggtgac ccgtgagccc gtctggggcg gggtcgggcg ccacgcgcgc actgcgacga
     1981 cgcgaccgcc gcgcagtgcc gctagctcgg cagcccagtg cagggccgcc ggggacttcg
     2041 aggtggcgct gactcccacc acgatcgtgt acgggctatc agggtcgatc atgaccagac
     2101 ctcctaggcg cgaaccggct cgagcggcgg ttcgctcacc cggctcagtg gatcggcgat
     2161 gtcctccagt cccttgccct ccgcgtccac gccgatcgcg accgcgacga tcccgccgac
     2221 gatcatgatg gctgaggcaa gcacgtatcc ccagaacagc ggagtgcgct ccgtgccctt
     2281 gccgaccaga gccccgaaca gcaccggtcc caacgcgccg accacctgac cgatggcgaa
     2341 gaagtaggag atcgcctgac cgcgcacctc cagcgggaag atctcgctga ccgtgaggta
     2401 tgccgcggac gcgcctgccg aggcgaagaa gaaggacacg caccagaaga tcgtgtgcgt
     2461 ggtggcgttg agcgagccct gcttgaacag gaacgccgag acgagcagga ccagcccggc
     2521 gagcaggtag gtcgtgaaga tcatcttgcg tcggccgatg gtgtcgaaca ggtggccaag
     2581 gagcaacggg cccagcaggt ttccgatggc gaacgggatg aagtagacgg ccgctgcgga
     2641 cttgtcgagg tggtagaagt tctgcagcac caacgcgtag gtgaagaaga tggcgttgta
     2701 gaggaagctc tgagtgatca tcatggtcag gccgagggcc gtccgcgatg ggtaccgctt
     2761 gaagaagacc tccatcaggt cggaaaaggg gagccgctcc ttcggcttga cgaccatcgc
     2821 cttgctctcg tcgaccggtc gcagcgaggc gccctgctcc tccagggtcc gctcgatacc
     2881 gtcgacgatc cgctcggcct cctcgccctg gccgtgcgtg accatccagc gggggctctc
     2941 gggaatgtgc cggcgtaccc agatgatcac caggcccatg accggaccga tgaagaacgc
     3001 gatgcgccag ccgaggttct cagggaccct gctggtgtcg agcagataga agcttgcccc
     3061 ggcgcccagg agcgcccctg cccagtaggt gccgttgacg gcgatgtcga cccgaccgcg
     3121 gtacttggcc gggatgagct cgtcgatggc gctgttgatc gccgtgtact cgccaccgat
     3181 gcccagaccg gcgacgaagc gccacaggta caggaaccac ggagtccagg cgagcccggc
     3241 gacgccactg ccgaccaggt agatcgccag cgtgatgatg aagagcttct tgcgacccca
     3301 acggtccgtg aggcgtccga aggtgagcgc gccgaccacc tggccgatga gatagaccgt
     3361 gcccgccagc ccgacctccg tggaggacat gcccaagctc ttctggaagc cggccgtgga
     3421 caccagctga atttccaggc catccaggat ccaggacacc cccagcccga cgaccaccat
     3481 ccagtggaac ttcgcccagg gcaggcggtc cagtcgggct gggacgaggc ttcgcagccc
     3541 accgccgctc tctgctgctg ctgtcgtcat cgacactcct ccttggtcgt tcgggcccac
     3601 gtcggccggc gccttctggg aaggtacgcc cgctttgccg gattcgcgcg tcgagcatcc
     3661 ttgcaggtca gcgggccagc accccaattg gccgccctca ggcgtgcaac gtgccccgta
     3721 aagtccatgc catgcggatc gtgtctcttc tcccctccac caccgagatc ctcttcgtca
     3781 tcggtgccgg cgaccacgtc gtcggagtga ccgtggagtg cgacacccca gtggaggcca
     3841 gagagcgcgc catcgtctcc acgacgacga tccctggcgg actgacgtca cgcgagatcg
     3901 atgccttcgt cagtgcggcg atggctgcgg gcgaggacct gtaccacctg gaccagggcg
     3961 cgctgtcccg gctcgacgcc gacctggtcg tcacccagga cctctgcgcc gtgtgcgcgg
     4021 tcgacgtctc agtggtggac gaggccttgg actacctggg ctgccgggcc gacgtgctga
     4081 ccatcgaccc gcacacgctg gccgacgtgc tggactcggt cgtccagctg ggacaggcca
     4141 gcggtaccga gcgtgcggcg accgcgctcg tgaagtcttt gaccgctcgg ctgtatgccg
     4201 tggagcaggt cgtgcgcgac ctgccccgcc cgcgggccct ggtgttggag tggaccgacc
     4261 cgccgttcgc gccgggacat tgggtgcccg agatggtcga ggccgccggc ggtgccagtg
     4321 ccctcggccg gaaaggcgag aagtcggtca ggatccgctg ggatgacgtg cgcgggtgtg
     4381 gcgccgacgt ggtggtctgc gcaccgtgcg ggtacgacct cgagggggcc gctgccctcg
     4441 gcgaggcgct actcgccagt ggcgagctgc cacccggcat accggtgtgg gcggtggacg
     4501 cgaatgcgag cttcgcgcgc cccggaccgc ggttggtcga cggcgtcgag gcgcttgccg
     4561 ggatcctgca cccggatgcg gcgcagccgc cgaacccgat gatggcccgg cggctgcggt
     4621 agccgtgtgt gctggtcgag ctggcgcgtt ctaggcgggt cagctcaacc gggtcagttc
     4681 accaacgcga tgagcaggtc ggcccgggtg aggacgccga ccggcttgcc gtcctcgacg
     4741 accatgatcg cgtcgtgctt ctccagctcg gctcgtgccg atgccaccgg ctccccggcg
     4801 ccgaccagcg gcagcgacgg ctccatgtgc ttcccgacgg ggtcggtcag gtgggcgctg
     4861 ccgttgaaca gggcctcgag caaggctcgc tcgctgactg acccggcgac ctcgccggcc
     4921 atgacgggcg gctcggcctt gaccacgggc atctgcgaga ccgagtactc gtgcaggatc
     4981 tcgatggcgt cgcggacggt ctcggtcggg tgcgtgtgca ccagcgcggg caggtcgccg
     5041 gccttgcgat gcagcacttc gcccacggtc gcctggtcga cggacttcat gaacccgtag
     5101 gagctcatcc agtcgtcgtt gaagatcttg gacatgtaac cgcgaccgct gtccggcagc
     5161 agcaccacca gcacggcttc agcgggcagg tccttggcgg cccgcagcgc cgcgaccacg
     5221 gccatcccgc aggagccacc gacgagcagg ccctcctcct tggccagccg gcgggtcatg
     5281 tggaacgagt cggcatcgct gaccgcgatg acgtcgtcga ccacgtccgg gtcgtaggcg
     5341 gtgggccaga agtcctcgcc cacgccctcg accagatacg gtcggcccgt tccgcccgag
     5401 tagaccgagc cctcagggtc ggctccgatg acctgcacgc gtccgccctc gcggtcggcg
     5461 gacacctcac gcaggtagcg gccggttccc gtgatcgtgc cacccgtgcc gacgccggcg
     5521 acgaagtgcg tgactcggcc atcggtgtcg ttccagatct ccgggccggt gctctcgtag
     5581 tgcgaggcgg gtccgttctg gttcgcgtac tggttgggct tccaggctcc gtcgatctcc
     5641 ttcaccagtc ggtccgagac cgagtagtag gagtcggggt ggtccggcgc caccgcggtg
     5701 gggcacacca cgacctcggc cccgtaggcc ttgaggacgt cgcgcttgtc ctggctgacc
     5761 ttgtcggggc agacgaagac gcaggagtag cccctgcgct gggccaccag ggccaacccg
     5821 acgccggtgt tgccggaggt gggctcgacg atggtgccgc cgggcttcag ctcgcccgac
     5881 gcctcggcgg cctcgatcat cttcagggcg atgcggtctt tgaccgagcc ccctggattg
     5941 aggtactcga tcttggccag gaccgtcgcg gccaccccct cggtgacggc gttgagcttg
     6001 acgagtgggg tgttcccgac gaggtcggcg atgtgctctg catacttcac gccgtcatcc
     6061 tctcagatgc tggacggtcc tcccgcagac ggccgagccg ctccgcagtg ccccggcgca
     6121 ccatcgagtc aggggtaccg gcatcctggg gggaggcacc acatggctgt ctcagccgtt
     6181 ggcgtgacga gcacgagcga gcggaagggc ttccccatgg gcagggcacg acgcgcacgc
     6241 aagatcgcgg cgacggccgc ctacggcgga ggtggcctgg ccgccggcat cgggaccctg
     6301 ggagttctcg ggtacggact gctcaaggcc gaggcgaagg tcgcccgacg tctggtcggg
     6361 caacccttcg acggggcgcc cgacgacgat gggacctatg gggccggcat cggcgaaccc
     6421 gtggagttcg tggtcctggg cgactcgtcg gcggccggga tgggcgccga ccaccggtac
     6481 caaaccgtcg gggcgatcat cgccaacgga gtttcggccc tgaccgggcg gcccgttcat
     6541 ctgaccaact gcgcggtggt cgggtctgag tcctccgggc tggagctgca gctcgccaac
     6601 gcgctggacc aggttcccag tccccacgtg gctgtcatca tgatcggggc gaacgacgtc
     6661 acccaccgca tcgacaagtc catcgccgtg cgccacctcg gggacaccgt gcgccggttg
     6721 cgggacctgg gcgccgaggt tgtcgtcggc acgtgccccg acctcgggac gatccagccg
     6781 atcccccagc ccttgcggct gatcggccgg cgctggtcgc gagacatggc ggcggcgcag
     6841 accgtggccg tggtcgaagc cgggggacgc accgtctcgc tcggcgacct gctcggcccc
     6901 gagttcgcgc agcgcccgca cgagatgttc agcgcggacc gcttccaccc gtccccggcc
     6961 ggctatgccc gagcggctgc ggcgctactg cccagcgtgt atgccgccct cggcgtctgg
     7021 gagggatcgg cccgagacga gccggtgccc gacacccgcc gcggagaggg ggtggggccc
     7081 gtcgcgatcg ccgcggagta tgccgtccga gaccccggca ccgaggtcag cgcgaccgag
     7141 atcgccggcc agagccgtgg tccacgtggc cgctgggccg tgctgttgcg tcgcccccac
     7201 aaggcggtac ccgaccggca ggacgaggtc gtcggcgtca cggaggcggc gtcgatcgcg
     7261 gaggtcgggc gcagcgccct ggccccggac agcgagagca aggccacacc cgcggaccca
     7321 gccacacggc ataccatcga ggctgactaa gcggccgctt atctggcggc ccctcgacga
     7381 ggaggaaccc cgtgaccgaa gccgtcatcg tctccaccgc ccgcacgccc atcggacgcg
     7441 cgttcaaggg ctcgctgaag gagatgcggc ccgacgacct gtcggtgcag gtcatcgccg
     7501 cggctctggc caagatcccc gccctcgacc ccacgctggt cgaggacctc tactggggct
     7561 gcgccgagcc ctcgggtcgc cagggttcca acctggcgcg cgtgatcgcc gtcctcgccg
     7621 gtttcgacgg gctgcccggg tcgacgatca accggttctg cgcctcctcg gtgcagacca
     7681 cgcggatggc gttccacgcc atcaaggctg gtgagggcga catcttcatc tccggtggcg
     7741 tcgagtgcgt ctctcagtac agcaactggg cgggagcggg cgggtctgcc ggcgacgacc
     7801 agaaccccct gttcgcgccg gcgcaggccc gcagcgtgca gacggccaag accaacgaga
     7861 cctggaccga cccgcgtgcg aacgatctgc tgcccgacgt ctacctgacg atgggtcaga
     7921 ccgcggagaa cgtcgccacc ctgcgcggca tctcccgcga gcgccaggac gagtggggcg
     7981 tgagcagcca gaaccgcgcc gagaaggcca tcgccaacgg cttcttcgag cgtgagatcg
     8041 ctccggtgac cctggccgac ggcacggtcg tgagcaagga cgacggcccc cgcgcggggg
     8101 tcacggtgga cggcctcaag ggcctgaacc cggtcttccg ggagcagggc accatcaccg
     8161 caggcaactg ctgcccactc aacgacggtg ccgccgcgct cgtggtcatg agtgacacca
     8221 aggccaagga gctcggcctg acgccactgg cacgcgtggt gtccacaggc gtttccgggc
     8281 tgtcccccga gatcatgggg ctgggccctg tcgaggcctc acgtcaggca ctggcccggg
     8341 ccggcatgac gatcggggac ctcgacctct acgagatcaa cgaggcgttc gccgcgcagg
     8401 tgctgccgtc cgcggacgac ctcggcatgg acttcgacaa gctcaacgtg cacggcggtg
     8461 ccatcgcgct cggccatccg ttcgggtcga ccggggcgcg catcacgacc acgctgctca
     8521 acggcctgga ggctcgggac ggtcagttcg gcctggagac catgtgcgtg ggtggcggtc
     8581 agggcatggc gatcatctac gaacgcctca gctgaggtct cgtcgcagtt cagccagtcg
     8641 ggcggtcagg tcatcctggc cgcccgactc gcaggcgtcg tagaccacca ccgtcagctg
     8701 gtccatgacg accgccgggc ccaggtcggg gacgtcggac tccgcgaggt cgtcgacgag
     8761 tcggcgcacc cgcggcatac agccaagcgc gtggtccacc gg
//
LOCUS       DASYFY010000248         7045 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1489774, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000248 DASYFY010000000
VERSION     DASYFY010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7045
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1489774"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..643)
                     /locus_tag="VGN19_04915"
     CDS             complement(<1..643)
                     /locus_tag="VGN19_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEV7195262.1"
                     /translation="MDATSAAVLAGFAGLLTGALAVVAVRYSERQQRRIPEPVVPPPL
                     PAGVGDVLAVLRSGAIVVDSADAVINNSPSAVAYGLVRDHELVHAELRHLARQVRRDG
                     VIREAQLELSRGPLGQGRSIMQARVAPLGSSHVLLLVEDHTQAKRVEEVRRDFVANVS
                     HELKTPVGGLGLLAEAILDAKDDPEAVARFASRMQVESHRLAQLVKEIVDLSRL"
     gene            814..1503
                     /gene="phoU"
                     /locus_tag="VGN19_04920"
     CDS             814..1503
                     /gene="phoU"
                     /locus_tag="VGN19_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEV7195263.1"
                     /translation="MRDAFHEDLDTISDQLVEMTRLAGSAMARATTALLDADIQLAES
                     VIDADKELDRLRERLDAHSIDLLARQQPVATDLRMVVTSMRMSADLERMGDLARHVAK
                     VARLRYPESAVPADIRATILQMGQVAERIVAKCGSVIAAKDVEDAKTLERDDDAMDEL
                     HRVLFSHLIDGTWKHGTEAAVDMTLVGRYYERFADHAVSVAHRVVYLVTGEWDIAEDH
                     EEQEDGVSDPL"
     gene            complement(1507..2241)
                     /locus_tag="VGN19_04925"
     CDS             complement(1507..2241)
                     /locus_tag="VGN19_04925"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004619 - phosphoglycerate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglyceromutase"
                     /protein_id="HEV7195264.1"
                     /translation="MAYTLILLRHGHSDWNAKNLFTGWVDVDLNEQGRAEAVSGGRLL
                     RDRGVLPTVVHTSVLRRAINTANLALDAADRHWIPVRRDWRLNERHYGALQGLDKAAT
                     REKYGDEQFMLWRRSFDTPPPPIELGSEYDQSDDPRYAGVEVPRTECLKDVIVRMMPY
                     WEGAIQDDLRAGETVLVTAHGNSLRALVKHLDQISDEDIAGLNIPTGQPLVYTLGDDF
                     MPLQPAEYLDPEAAAEAAAAVANQGR"
     gene            complement(2252..2767)
                     /locus_tag="VGN19_04930"
     CDS             complement(2252..2767)
                     /locus_tag="VGN19_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HEV7195265.1"
                     /translation="MTALQTTVRSFLDEAEIEWEQGARDGEFVLTLPGEKKLKTVASL
                     VATGDALSVSAFVIRNPDENHETFYRYLLRKNLRLPGLAYAIDGSGDVYVSGRLPGAA
                     VDAAYLDRLLGVVLEAADAHFNELLVIGFLSSMRKEWDWRVSRGESLRNLEAFRSILQ
                     RDGDPAPDGAQ"
     gene            complement(2764..4077)
                     /gene="mshA"
                     /locus_tag="VGN19_04935"
     CDS             complement(2764..4077)
                     /gene="mshA"
                     /locus_tag="VGN19_04935"
                     /EC_number="2.4.1.250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010125 - mycothiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-inositol-3-phosphate glycosyltransferase"
                     /protein_id="HEV7195266.1"
                     /translation="MGCCDRIDRVAMLSVHTSPLEQPGTGDAGGMNVYVVEVAHQLAR
                     RGVEVEIFTRTTTADLPPTVELEPGVLVRHVTAGPYEGLGKQDLPGQLCAFAAGVMRT
                     GAHEPEGHYTLVHSHYWLSGQVGWLAADRWQVPLVHTMHTMARVKNLHLAEGDTPEPS
                     GREIGEVQVVEAADRLIANTLGERHELIDLYAADPEKVVVVPPGVDLSLFSPGDQRAA
                     RAAVGLPLDAKVLLFVGRIQPLKAPEVLVKAAAELLARHPDWRGQLVVAVLGGPSGSG
                     LEHPQSLQELADGLGVSAQVRFVPPVSRGDLVQWYRAADLVAVPSHSESFGLVAVEAQ
                     ACGTPVVAARVGGLPTAVGEAGVLVDGHDPRVWADTLGELLLDPERREKLSRMAVEHA
                     SLFGWDRTTERLYEVYVEACRSRHRSKDTPSPNGSLVVSPSAVTP"
     gene            complement(4112..4906)
                     /locus_tag="VGN19_04940"
     CDS             complement(4112..4906)
                     /locus_tag="VGN19_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195267.1"
                     /translation="MIWRGRDLSRSMVALVTSLTALALLGLVTHAPAWFGHDEGVGNV
                     PPGLLTVLPNARGVATLGGGVSVSLYPDGMRITRGNDLLLQTVVGGSVLSGVVGQVSV
                     NGTDVRETVDRHVDNLVVDELVFLPGRATYFGHLYDSGVTLPVTIRIELAGSTIRLGA
                     SVIGADAVVWHLARQTRTFGIPPALGAMILRGHAAWIAPNTPDGRAAFSTVLGTDVGA
                     GPQPAERSVDLRSAGRTDVHVWTDSGYLTVSSQARHLPTATTSTTS"
     gene            4966..5769
                     /locus_tag="VGN19_04945"
     CDS             4966..5769
                     /locus_tag="VGN19_04945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006946424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195268.1"
                     /translation="MEQRPVGTITRGTTNPNRLRRVDRWLAGPQAWRLTRSPEPPVVV
                     DLGFGASPVTAVELHARLSRVRPEVVVVGIEIEPDRVARAKPLEREGLSFRLGGFEVP
                     LDAGSQATVVRAFNVLRQYDEAAVAAAWATVQGRLAPHGLFVDGTCDELGRLSTWVAI
                     DRSGPQSMTLSWRLRGLQTPSTIAERLPKALIHRNVQGERVHTWLSAVDRAWAHAAQH
                     ASFGVRQRFIATASALQADGWPVLDGPARWRLGELTVAWDAVAPDGQRA"
     gene            complement(5757..6152)
                     /locus_tag="VGN19_04950"
     CDS             complement(5757..6152)
                     /locus_tag="VGN19_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HEV7195269.1"
                     /translation="MVNTPEETLHMTTLADPREEIFTVERPWGNFQQFVSNHQVTVKI
                     ITVQPGHRLSLQTHDHRGELWQILDLPIEVTIGDRSWSAQPGEAVWVPPHTLHRMANH
                     GDRPGRLLEIAFGDFDEADIVRLQDDYAR"
     gene            complement(6146..6478)
                     /locus_tag="VGN19_04955"
     CDS             complement(6146..6478)
                     /locus_tag="VGN19_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2516 family protein"
                     /protein_id="HEV7195270.1"
                     /translation="MISALGSAQGIVILLLSLAAFAAEVFALVDTARTRPDAFVAAGK
                     RTKKFWTIINGIATVLGFISIGTGLLFSVGLLAIVGSGIYLADVRPALKQVRGTGGGQ
                     HMGPYGPW"
     gene            complement(6509..>7045)
                     /locus_tag="VGN19_04960"
     CDS             complement(6509..>7045)
                     /locus_tag="VGN19_04960"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEV7195271.1"
                     /translation="MLATCVANGWDTATYRHPDHPVQQAIARTLSELTGDAIGAVAVD
                     GCGAPVMAVTLAGLARAFGRLASAAPDTEEGQVADAIRANPAYLGGTDRDVTALIEST
                     PGLVAKDGAESVYAVGLADGRGVAVKVADGSSRAKPMILAAVLRRLGVDTPALARLEH
                     APVLGHGEPVGAIVAVNV"
BASE COUNT         1119 a         2434 c         2458 g         1034 t
ORIGIN      
        1 gcaggcggga caggtcgaca atctccttga cgagctgggc gaggcgatgg ctctccacct
       61 gcatccggct ggcgaagcgg gccacggcct cggggtcgtc cttggcatcc agaatggcct
      121 cggcgagcag accaagaccg ccgacagggg tcttgagctc gtggctgacg ttggcgacga
      181 agtcacgccg aacctcctcc acccgcttgg cctgggtgtg gtcctccacc agcaacagca
      241 cgtggctgct gcccaacggc gcgacccggg cctgcatgat cgagcgccct tgacccaggg
      301 gtccgcgtga cagctccagc tgcgcctcgc ggatgacgcc gtcgcgccgt acctgacggg
      361 ccagatgacg cagctcggca tgcaccagct cgtggtcccg gaccagcccg taggcgacgg
      421 ccgacggcga gttgttgatc acggcgtcgg cggagtccac gacgatggcg ccggagcgca
      481 gcacggcgag aacatcgccc actccagccg ggaggggtgg gggtaccacg ggctcgggaa
      541 tgcgccgctg ctgccgctcg gagtagcgga cggccacgac ggcgagtgcg ccggtcagca
      601 gtccggcgaa cccggccagg actgctgcac tggtggcatc cacgtgttca aatgtacgca
      661 acggagtgga cgccacagtg caccctcggg cactctcctg cggggacgtt tccagatgtt
      721 cactacagtc caccccagcg ttcatccccc cgtgggagtc tcaggctcgc actaaccacg
      781 gcgcgctcgg cgcgccccgg cccgaaggaa cccatgcgcg acgcgtttca cgaggacctc
      841 gacaccatct cggaccagct cgtcgagatg actcggctcg cggggtctgc gatggcccgg
      901 gcgacgaccg cgctgctgga cgccgacatt cagctcgcgg agtcggtgat cgacgccgac
      961 aaggagctcg accggctgcg cgagcgcctg gacgcccact cgatcgacct gctcgcgcgc
     1021 cagcagccgg tagccacgga cctgcgcatg gtcgtcacct cgatgcggat gagtgccgac
     1081 ctcgagcgca tgggcgacct cgcccgccac gtcgccaagg tcgcgcgcct tcgctacccg
     1141 gagtcggccg tccccgccga catccgcgcg acgatcctgc agatgggtca ggtggccgag
     1201 cgcatcgtcg ccaagtgcgg ttccgtgatc gcggccaagg acgtcgagga cgccaagacc
     1261 ctcgagcgcg acgacgacgc gatggacgag ctgcaccgcg tcttgttcag ccacctcatc
     1321 gacgggacgt ggaagcacgg caccgaggcg gcggtcgata tgacgctggt gggtcgctat
     1381 tacgagcggt tcgccgacca cgccgtgtca gtggcccacc gcgtcgtcta cctggtcacg
     1441 ggtgagtggg acatcgccga agaccacgaa gagcaggaag acggcgtctc cgaccccctc
     1501 taggtctcag cgaccctggt tggccacggc ggcggccgct tcggcggcgg cctcgggatc
     1561 gaggtactcg gccggctgaa gcggcatgaa gtcgtccccg agggtgtaga ccagaggctg
     1621 gccggtgggg atgttcagac ccgcgatgtc ctcgtcgctg atctggtcga gatgcttgac
     1681 caaggctcgc aggctgttgc catgggcggt gacgagtacg gtctcgccag cccggaggtc
     1741 gtcctggatc gcgccctccc agtacggcat catccggacg atcacgtcct tgaggcactc
     1801 ggtacgcggc acctcgacac cggcataccg cgggtcgtca ctctggtcgt actcactgcc
     1861 gagctcgatc ggcggcgggg gcgtgtcgaa cgagcgacgc cacagcatga actgctcatc
     1921 gccgtacttc tcgcgggtgg ctgccttgtc gagcccctgg agcgctccgt agtggcgctc
     1981 gttcaggcgc cagtcgcgcc gcaccgggat ccagtgccgg tcggcggcat cgagcgccag
     2041 gttcgcggtg ttgatggccc gacgcagtac cgaggtgtgg acgaccgtgg gcagcacccc
     2101 gcggtccctg agcagtcgcc cgccgctgac cgcctccgca cgcccctgct cgttgaggtc
     2161 gacgtcgacc cagccggtga agaggttctt ggcgttccag tcggagtgcc cgtgacggag
     2221 caggatgagc gtgtaggcca tggcgcccag cctactgagc cccatccggg gccggatcac
     2281 cgtcccgctg caggatcgac cgaaaggcct cgaggttgcg cagcgactct cctcgcgaga
     2341 cccgccagtc ccactccttg cgcatcgagg acaggaagcc gatcacgagc agctcgttga
     2401 aatgagcgtc agccgcttcg aggacgacgc ccaggagccg gtccaggtat gccgcgtcga
     2461 cagccgcccc aggcagccgg cctgacacat agacatctcc ggaaccgtcg atcgcgtagg
     2521 ccagcccggg aagccgcagg ttcttgcgca ggaggtaacg gtagaacgtc tcgtggttct
     2581 cgtcggggtt gcgaatcacg aaggctgaga ccgacagggc gtcacccgtg gcgaccaggg
     2641 acgccacggt cttgagcttc ttctcccctg ggagggtgag gacgaactca ccatcgcggg
     2701 caccctgctc ccactcgatc tcggcctcgt ccagaaagga gcggaccgtc gtctggaggg
     2761 ctgtcacggg gtaaccgcgg acgggctgac gaccagcgag ccgttcggtg acggggtgtc
     2821 cttcgaccgg tggcggcttc gacacgcctc gacgtacacc tcgtagaggc gctcggtcgt
     2881 gcggtcccac ccgaacaggg acgcgtgctc gaccgccatt ctcgacagct tctcgcggcg
     2941 ctccgggtcg agcagcagct caccgagcgt gtccgcccag actcgtgggt cgtgcccgtc
     3001 gaccagtacg ccggcctctc ccacggcggt cggcagcccg ccgactcgcg ccgcgaccac
     3061 cggggtgcca caggcctggg cctcgaccgc cacgaggccg aacgactccg agtgggaagg
     3121 cactgccacg aggtcggccg cccgatacca ctggaccagg tcaccgcgcg agaccggcgg
     3181 gacgaacctg acctgggcgc tcacgcccag cccgtcggcg agctcctgga gcgactgcgg
     3241 atgctcgagc ccggaacccg acggcccgcc gagcacggcc acgaccagct gaccccgcca
     3301 gtccggatgt cgagccagca gctcagccgc cgccttgacg agcacttccg gggccttcag
     3361 cggctggatc ctgccgacga acagcagaac cttggcgtcc aggggcaggc cgaccgccgc
     3421 gcgggccgcg cgctggtccc ccggcgagaa cagcgacagg tccacccctg gagggacgac
     3481 gaccaccttc tcgggatccg cggcatacag gtcgatcagt tcatgacgct cgcccagggt
     3541 gttggcgatc aggcggtcgg ccgcctcgac gacctggacc tcaccgatct cgcgaccgct
     3601 cggctccggg gtgtcaccct cggcaaggtg gaggttcttg acccgcgcca tggtgtgcat
     3661 ggtgtgcacg aggggaacct gccaccggtc tgcagccagc cacccgacct ggccggacag
     3721 ccagtagtgc gagtgcacga gggtgtagtg cccttcgggc tcgtgggccc cggtgcgcat
     3781 cacgcccgcg gcgaacgcgc atagctgacc gggcaggtcc tgcttgccga ggccctcgta
     3841 cggcccggcc gtgacatgcc gaaccagcac tcccggctcc agctcgacag tcggagggag
     3901 gtcggcggtg gtcgtccggg tgaagatctc gacctctacg ccgcggcgcg cgagctggtg
     3961 ggccacctcg acgacataga cgttcatgcc gcctgcgtcg ccggtccccg gctgctccag
     4021 cggcgaggtg tgcacgctga gcatggcgac tcgatcgatg cggtcgcagc agcccatgga
     4081 gcgagtctgc caccccgatg ggggccgggg gctacgaggt ggtgcttgtc gtggcggtgg
     4141 gcaggtgccg cgcctgggag gacaccgtga gataacccga gtccgtccac acatggacgt
     4201 ccgtgcgacc cgcagatcgc aggtccacac tccgctccgc cggctgaggt cccgccccga
     4261 cgtcggtccc caggacggtg ctgaaggcgg cgcgcccgtc cggggtgttc ggcgcgatcc
     4321 aggcggcatg gccgcgcagg atcatggcgc ccaaggcggg gggtatgccg aacgtcctcg
     4381 tctgccgggc gaggtgccag accaccgcgt cggccccaat gaccgaggcg ccgagtcgga
     4441 tcgtcgagcc cgcgagctcg atcctgatcg ttactggcag agtgacgccg gagtcgtaca
     4501 ggtgaccgaa gtaggtcgcg cgaccgggga ggaacaccag ctcgtccacg accaggttgt
     4561 ccacgtggcg gtccaccgtc tcgcggacgt cagtgccgtt cacgctgacc tggcccacca
     4621 ctccggacaa caccgacccg cccacgaccg tctgcagcag caggtcgttg cctcgggtga
     4681 tccgcatgcc gtcgggataa agggacacgg ataccccacc cccgagcgtg gcgacccccc
     4741 gggcattcgg cagaaccgtc agcaggcccg gtggaacgtt gcccacgccc tcgtcgtggc
     4801 cgaaccacgc gggggcgtgc gtcaccagcc cgagcagtgc gagcgcggtc agcgaggtca
     4861 ccagcgccac catgctgcgg ctgaggtcgc gcccgcgcca gatcacgcca tcaccctagg
     4921 gctcggcgct gcccgtaggc tgcccgcgtg gggggacaga gcccgatgga acaacggccg
     4981 gtgggcacca tcacacgcgg gaccaccaac cccaaccgcc tgcgacgggt ggaccgctgg
     5041 ctggccggtc cccaggcctg gcggctgacc cgcagcccgg agccgcccgt ggtggtcgat
     5101 cttggcttcg gcgcctcgcc ggtcacggcc gtcgagctgc acgcccggct cagcagggtg
     5161 cggccggagg tcgtggtggt cgggatcgag atcgagcccg atcgggtggc ccgagccaaa
     5221 cccctggagc gagaaggact ctcgttccgg ctcggcgggt tcgaggtccc gctggatgcc
     5281 gggagccagg cgaccgtcgt gcgggccttc aacgtgcttc ggcagtacga cgaggcagcg
     5341 gtcgccgctg cctgggccac cgtccagggt cggctggcac cccatgggct gttcgtcgac
     5401 ggaacctgcg acgagctggg acgcctgagc acctgggtcg ccatcgaccg gagcgggcca
     5461 cagtcgatga cgttgtcgtg gcggttgcga gggttgcaga ctccctcgac catcgccgag
     5521 cgccttccga aggccctcat ccaccgcaat gtccagggcg agcgcgtcca cacctggctg
     5581 agtgccgtcg accgcgcctg ggctcacgcc gcgcagcacg cgagcttcgg ggtgcggcag
     5641 aggttcatcg ccacggcgag cgccctgcaa gccgacggct ggccggtgct cgacggcccg
     5701 gctcgatggc gtctcggcga gctgacagtc gcctgggatg cggtggcgcc tgatggtcag
     5761 cgcgcgtagt cgtcctgaag gcgaacgatg tccgcctcgt cgaagtcgcc gaaggcgatc
     5821 tccaggaggc gaccggggcg gtcgccatgg ttggccatcc gatggagggt gtgcgggggc
     5881 acccagacgg cctcgcccgg ctgcgcgctc cagctgcggt caccgatggt gacctcaatg
     5941 ggcaggtcca ggatctgcca gagctcgcca cgatggtcgt gcgtctgcaa agatagccgg
     6001 tgtcccggct ggaccgtgat gatcttgacg gtgacctggt ggttcgagac gaactgctga
     6061 aagtttcccc acggtcgctc gacggtgaag atctcctcgc gagggtcagc gagagtggtc
     6121 atgtgcagtg tctcctcagg tgtgttcacc atggcccata cggtcccatg tgttggccgc
     6181 cccccgtgcc acgcacctgc ttgagtgctg gccgcacgtc cgccaggtag atcccggagc
     6241 cgacgatggc caggaggcct acggagaaca gcagcccggt cccgatcgag atgaagccaa
     6301 ggacggtggc gatgccgttg atgatggtcc agaacttctt ggtgcgcttc ccggcggcga
     6361 caaaggcgtc cggtcgggtc cgggccgtgt cgacgagagc aaagacctcg gcggcaaacg
     6421 cggccaggga cagcaggagg atgacgattc cctgcgcgga gccgagggcg gagatcatga
     6481 ggacagccta agggtcgggg tcgtcgtctc agacgttcac cgcgacgatg gcgccgacgg
     6541 gttccccgtg gcccagcacg ggggcgtgct cgagacgggc gagcgccggg gtgtcgacac
     6601 cgagccggcg cagcacggcg gcgaggatca tcggcttggc tcgggaggac ccgtcagcca
     6661 ccttcacggc gaccccgcgc ccgtccgcca gacccacggc atacaccgac tcggccccgt
     6721 ccttggccac caggcctggc gtcgactcga tgagggcagt cacgtctcgg tcggtgccgc
     6781 ccaggtaggc cgggttggcg cggatcgcgt ccgcgacctg accctcctcg gtgtccgggg
     6841 cagcgctagc gaggcgaccg aaggcgcggg ccagcccggc aagggtcacc gccatgaccg
     6901 gggcaccgca cccgtcgaca gccaccgcac cgatggcgtc gccggtgagc tcggagagcg
     6961 tccgcgcgat cgcctgctgc accgggtggt cgggatgacg gtaggtcgcg gtgtcccagc
     7021 cgttcgccac gcaggtggcc agcat
//
LOCUS       DASYFY010000249         3316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1226734, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000249 DASYFY010000000
VERSION     DASYFY010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1226734"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..124
                     /locus_tag="VGN19_04965"
     tRNA            52..124
                     /locus_tag="VGN19_04965"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:85..87,aa:Ala,seq:ggc)
     gene            complement(274..570)
                     /locus_tag="VGN19_04970"
     CDS             complement(274..570)
                     /locus_tag="VGN19_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195272.1"
                     /translation="MTDMDLVLRALAERGVWHGSDDGDAELVRVEIRRAARKAGIKVR
                     TFVDGLGRPHACTPDGLPAHEPWRGAVIHAHESGAMGAVIAQALDRLFRTDDSG"
     gene            complement(616..1815)
                     /locus_tag="VGN19_04975"
     CDS             complement(616..1815)
                     /locus_tag="VGN19_04975"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEV7195273.1"
                     /translation="MTNPDEPGGAPVQRRRKTAPDKRSSGESSIFKGEDGRWHGFVSM
                     GKKDNGRRDRRHVSAAKRADVVVKVRALETKRDAGMVEAAGRAPTVGEWLDHWLEHIA
                     ARRVRARTLESYESTVRLHLRPGVGHQRLDRLQPEHLERLYAALADKGLGPASILRAH
                     RVLSRALKVASQRGKVARNVATLVDPPLVRRPETALPLSAQEVKRVMAAALAHRNAAR
                     WTVAMAVGLRQSEALALRWADVDLERATLTVRRGVHRVRGQGLVYEEPKADRSRRTVA
                     LPAPLVEALRAHRAAQVEERLAAGAEWANLDLIFAQPNGKAIERKSDWRAWKALLQEA
                     GVRDIRVHDGRHTAATLLLSEGVHPRVVMEVLGHAQMRTTTDTYSHVLPALGRDAADR
                     MGKALWD"
     gene            complement(1895..2251)
                     /locus_tag="VGN19_04980"
     CDS             complement(1895..2251)
                     /locus_tag="VGN19_04980"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7195274.1"
                     /translation="MTAHSASEPERDRTKKARPSDPRRLSDVVAGGRLLFTPEEAATV
                     LRIGRTTVYALMKAGELHPVHIGRSCRLSRADLERYVRRLESPPPSRTRPRRRGPTIT
                     NQRGLFDLSSDPVDPA"
     gene            complement(2495..2632)
                     /locus_tag="VGN19_04985"
     CDS             complement(2495..2632)
                     /locus_tag="VGN19_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195275.1"
                     /translation="MLGELAQQLEDGRIYDRDLLALAGALNAVHDAYIRRSSFRGLIG
                     R"
BASE COUNT          453 a         1133 c         1188 g          542 t
ORIGIN      
        1 gccgggcctg tagtgttgcc gacggctcgg acacaccaga ccgggccgca aggggctgtg
       61 gcgcagctgg tagcgcacca cactggcagt gtgggggtca ggggttcgag tcccctcagc
      121 tccacccttc tgaccaggcc gttcttcgat ccggagggcg gccttcgtcg tcgacggtgc
      181 cactttggta gccactggat ccattcggtg ccagcgcaat cccgaaccgt ccgcgctcgt
      241 gcgcgtcggt tcgcggtggt gcgacggctg acctcagccg ctgtcgtcgg tgcggaaaag
      301 gcggtcgagc gcctgcgcga tgacggcgcc catagccccg gactcatggg cgtggatcac
      361 ggctcctcgc cagggctcgt gcgccggcaa gccgtcaggc gtgcaggcat gaggtcgccc
      421 gagcccgtcg acgaaggtgc ggaccttgat ccctgccttg cgtgccgcgc gacggatctc
      481 gacacggacc agctcggcgt ccccgtcgtc gctgccatgc cacacgccgc gctcggcgag
      541 ggcccggagg acgaggtcca tatcggtcac acggttatcg tcccgcggga ctttcggggc
      601 gaattcagtg tcaggtcagt cccacagtgc cttgcccatg cggtccgcgg cgtcgcggcc
      661 gagggctggc agaacgtggc tgtaggtgtc cgtggtcgtg cgcatctgtg cgtggccgag
      721 cacttccatg accactcgtg ggtgcactcc ctcggacagc agcaaggtcg ccgcggtgtg
      781 tcggccgtcg tgcactcgga tgtcccgcac gcccgcctcc tggagcaggg ccttccaggc
      841 gcgccagtcg gacttgcgct cgatcgcctt gccgttgggc tgggcgaaga tcaggtccag
      901 gttcgcccac tccgcgccgg cggccagccg ctcctcgacc tgagcagcgc ggtgggcgcg
      961 cagggcctcg accagcggtg ccggcagcgc gacggtccgg cgactgcgat cagccttggg
     1021 ctcctcgtag acgaggccct gcccgcggac gcggtggacg ccacggcgaa ccgtgagcgt
     1081 tgcgcgctcg aggtcgacgt cggcccagcg gagggcgaga gcctcggatt gccggaggcc
     1141 gacggccatc gccacggtcc accgggcggc gttgcgatgc gccagggccg cggccatcac
     1201 acgctttacc tcctgtgcgc tcaacggcag agcggtctcc ggtcgcctga ccagcggagg
     1261 gtcgaccaag gtcgccacgt tgcgggcgac cttgccgcgc tgtgaggcca ccttcagcgc
     1321 tcgggagagc acccggtgcg cacgcaggat cgaggccggc ccgaggccct tgtccgcgag
     1381 ggccgcgtac agccgctcca agtgctccgg ctgcaggcgg tcgagcctct ggtgaccgac
     1441 gcccgggcga aggtgcagcc ggacggtgct ctcgtagctc tccagcgtgc gtgcgcgaac
     1501 ccttcgggcg gcgatgtgct cgagccagtg gtccagccac tcaccgaccg tgggtgcccg
     1561 gccggctgcc tccaccatgc cggcgtcccg cttggtctcg agggcgcgga ccttgacgac
     1621 cacgtcggcg cgtttcgccg cggagacgtg ccgtcggtca cgccggccgt tgtccttctt
     1681 gcccatcgac acgaagccgt gccaccggcc gtcctcgccc ttgaagatcg acgattcacc
     1741 gctggaccgt ttgtcgggtg cggtcttcct ccgccgctgc acgggtgcgc cgccgggttc
     1801 gtcggggttc gtcatcgacc gctcctcgct gtggtcctgg gccgacatcg agtgtggcgc
     1861 tccgctctga catccggatc cggcaatcca cagctcaggc tggatccacg gggtccgagc
     1921 tgaggtcgaa caggccccgc tggttcgtga tcgtcggccc gcgccgccgc ggtcgggttc
     1981 ggctcggcgg gggactctca agccggcgga cgtagcgctc gaggtcggca cgggacagcc
     2041 gacagctacg tccgatgtga acgggatgga gctcgccggc cttcataagc gcgtagacgg
     2101 tcgtccggcc gatccgcaag accgtcgcgg cctcttccgg tgtgaacagc aggcggccac
     2161 ccgcgaccac gtccgagagg cgtcgcgggt cgctcggcct tgccttcttc gtgcggtctc
     2221 gttccggctc ggacgcggag tgggcagtca tgccagtaca aggcgccaaa aaagtcgaat
     2281 tgctgacagg tagagcgtga cgagttgttc gttgacgaac tgacgcgtgc cgggacggat
     2341 ggcgacagag gcggccgaca tcgacggtgg ctgcgctccc gatcaggggt gacaaccctg
     2401 tcaccccgcg accctgggct gtcaccccac gttcttgggc tgtcaccccg acgcacgtgc
     2461 gctgtcatcc ctgggggagg tccggggggt ggggctaccg acctatcagg ccgcggaagg
     2521 atgagcggcg gatgtaggcg tcgtggactg cgttgagagc gccggccaag gcgaggaggt
     2581 cgcggtcgta gatgcggccg tcctcgagct gctgggcgag ttcgcccagc acgtgagacc
     2641 agtcctggcg ccgaggggca atgggcgtag ggacctcgac gcggcgctcg acgacctgaa
     2701 ccgcggcaag tccggaggcc gccgcccggg actgctccca ggctcgctgc cggcatgggg
     2761 acgagcacca cttgggcagc cgccccgtgg ccttgacagc gatcgggccg cggcaccacc
     2821 cgcacgttcg cgcggcaacc cgccgcggcg acgcgtccgg cacgtctagc ggcatcgggg
     2881 ccgagccgat gtcagcgggg gcctttccgc ccgactgcga tctcgagcta cgcgccggcg
     2941 gttgggtccg gtctacgcgc ttgcggcgtt tgcccatgcc gcagatggtc cggacggctg
     3001 ttccgcaccc tgtcacccct gatccgtcac gacggatcga cggggaaccc gtgcatgagg
     3061 tgtgacggtt cgcgatcttg atatctccag cgagcaatca gacgctgtga cgagggctgg
     3121 gccacgggtc ctggggcagc ccgctcggcg gtcgcgtccg ggtgatcggg cgatcaacgg
     3181 gtttcgcgcg gttccccttc gcgacgccca tttcgtgagc gattgggcgg ccgtctggcc
     3241 ggccgcgaca cgccctctgg tgacttgggg agatcccacc tccacaggga tgagcgcgtg
     3301 aggctgcgcg aatggc
//
LOCUS       DASYFY010000250         8764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_911650, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000250 DASYFY010000000
VERSION     DASYFY010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8764
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_911650"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..2066
                     /locus_tag="VGN19_04990"
     CDS             84..2066
                     /locus_tag="VGN19_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEV7195276.1"
                     /translation="MNRLAHSTSPYLLQHKDNPVDWQEWGPEAFDEARRRDVPILLSV
                     GYAACHWCHVMAHESFEDDEVAAALNDGFVAVKVDREERPDVDAVYMTATSALTGHGG
                     WPMTCVLTPEGEPFFCGTYFPKQQFLHVLAQVREVWTNERDRVLESGAHIATRLREIT
                     AAGSPQPLDETALGEAVGALRRQFDEARGGFGGAPKFPPSMVLEFLLRHHARTGSTDA
                     LAMARGTCEAMARGGIYDQLAGGFARYSVDAAWVVPHFEKMLYDNAQLLRVYAHLFRT
                     TGDHLARRVAAETAAFLVRDLGTTEGGFASALDADTDGVEGLTYAWTPAQLEEVLGEQ
                     DGRAAAQLLAVTAVGSFEHGSSTLRLATDPTDPQWWERARNLLWENRNRRPQPARDDK
                     VVTSWNGLAIAALADAAMLLEDPELLDAARRCAAFVVANHVVDGRLRRSSRAGRVGAA
                     AGVADDYGNLAEGLLALYQASGEPRWLEVAQQLLRTATEQFRDQDGGFHDTAADAEPL
                     LFRPRSPSDNAEPSGQSALAGALLTCSALTGDPELRALAEAGLAASGLLASRDPRFGG
                     WALAVAEAAVTGPLQVAVVAAHPDDPQAAALRQVARRSTSPGLVVDHGSPDEPGHPLL
                     AQRPLVDGRAAAYVCRGFVCDAPVTDPEALVAAVSR"
     gene            complement(2076..2729)
                     /locus_tag="VGN19_04995"
     CDS             complement(2076..2729)
                     /locus_tag="VGN19_04995"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEV7195277.1"
                     /translation="MTPELLSGLPEAERRRVAELMVRRHFSRGESLFHEGDLADCVHF
                     IVDGHIVVQRTTPAGDRAAFTVMGPGEAVGELALLSPDGRRSSSVQALEPVVTLALDA
                     RAFAALTAQRPEVNRLLVDLLAARVRRLSDHLVDALYSTVEERVRRRLVDLCGIYGVE
                     HGQAVLPLTQSDLAELSGASRPATNRVLKGLAERGLVVLARGRIHLPDVAALRALVQ"
     gene            2876..3052
                     /locus_tag="VGN19_05000"
     CDS             2876..3052
                     /locus_tag="VGN19_05000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195278.1"
                     /translation="MTTHPHRDLAHHHPIVRRTDLGRWMWTCTCGGASCRTTSHTWHQ
                     VMVEALLHSMTIAP"
     gene            complement(3100..4665)
                     /locus_tag="VGN19_05005"
     CDS             complement(3100..4665)
                     /locus_tag="VGN19_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ligase PGM1-related protein"
                     /protein_id="HEV7195279.1"
                     /translation="MRTSSAPTLGDLDEAARYAAFDRLQKRLPAVWDGMQTGDPLESV
                     VVVPSLTVDRVVAASPGMTQAMEERFLFMLLLLRQPRLRMVYVTSVAVDPAIIEYYLS
                     LLPGVIPSHARSRLHLVSVGDARPGALTEKLLARPRVLTVIRSLIPDPHRCHLVPYNT
                     TALERDLAIELGIPMYAADPRLFPLGTKSGCREVFTEAGVRFPAGAEHLATPGEVVAA
                     LSALRVRRPAARSAMVKLNEGVSGSGNATVDLTGLPTPGSPAEAAALARRVSEMSLED
                     PAVDVDAFLAKLAQRRGIVEERILGEEVRSPSVQLRVTPHGILEILSTHDQVLGGPSG
                     QSYLGARFPADPAYAPLITTDAVRIGEVLARKGVMGRFAIDFVVVRNGPVWESHAIEV
                     NLRKGGTTHPFLTLQFLTDGRYDPQSARFLTPSGAERHLVATDHLQDPLLHGLRVEDL
                     FDLVARAGMHYDQSRQRGVVFHMISAITECGQVGMTAIAESAAQAQEVYAEAEQALRA
                     EAQAALAPQPLPW"
     gene            complement(4690..5820)
                     /locus_tag="VGN19_05010"
     CDS             complement(4690..5820)
                     /locus_tag="VGN19_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7195280.1"
                     /translation="MTDDGTVLVVDDLAQNRRLMDAILTPRGFTVLVAASGQEAMSIL
                     AERLPDVVLLDVLMPELDGYETCRRIRADPRTAFLPVVMVTASGERWRLRGLEAGADD
                     FITKPFDQAELLARVRSLVRIKRYHDTVTSQAAELRDWNRELSRRVADQVAELERLDR
                     LRRFLAPQVAREILARGDDDGILLSHRREITTVFTDLRGFTAFAETAEPEETMAVLGD
                     YHRALGELVFRFEGTLEHFAGDGLMVFFNDPVPCTDAPDRAVSMAVAMRGSVADLAET
                     WRWRGHNLGFGVGIAQGYATLGRVGFEGRYDYAAIGTVTNLAARLCAEARNGQILVTP
                     RVLSGITAVVKSKPVGPLHLKGFSRQVEAFEVLDLQPLSVSQ"
     gene            complement(5810..6202)
                     /locus_tag="VGN19_05015"
     CDS             complement(5810..6202)
                     /locus_tag="VGN19_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7195281.1"
                     /translation="MVAPSRTVLLVEDNERNLKLARDLLEFHGFTVLVATTGEDALTE
                     ASRSEPDLILMDLQLPGIDGRTALSRLRAQPGTAGIPVVALTAFAMAADRAQALEAGF
                     DGYLEKPISVRDFPQQVRQYLKGAPHDR"
     gene            complement(6366..7100)
                     /locus_tag="VGN19_05020"
     CDS             complement(6366..7100)
                     /locus_tag="VGN19_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEV7195282.1"
                     /translation="MSAVSTPPRKAFVEQVMGMPISVHVRGEVDAPEVGVGVGQVWSM
                     LRRVDEVFSTWRPDSELMRLRRDELSPQHAHPWLAEVEALCAEATDRTAGLFSATAAG
                     RDNYDPTGLVKGWAVERAAQLLAGVPRISFCINAGGDLVAGRGQWAQPSTWQVGIENP
                     RVGGTVEAMVPLTEGGLATSGNAARGAHILDPRDGNVVNREGSATVWGPSLMWADVWA
                     TALFVDPDAGRTRLALTDPAYRCLVL"
     gene            complement(7097..7375)
                     /locus_tag="VGN19_05025"
     CDS             complement(7097..7375)
                     /locus_tag="VGN19_05025"
                     /inference="COORDINATES: protein motif:HMM:NF016121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEV7195283.1"
                     /translation="MTKTYTGTAIDTQYGPVQVQITVTNGKITKSIAVQVPYTDPRDQ
                     EINSQAVPQLNAEVLQQQSASIDMVSGATFTSNGYIQSLQSAIDQAHL"
     gene            7395..7595
                     /locus_tag="VGN19_05030"
     CDS             7395..7595
                     /locus_tag="VGN19_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195284.1"
                     /translation="MVDEVLGPELVLALEPVVAELEAVDGVVVVVVVAGVWVPLTVPL
                     TVPLTWATTLEAAVVPALEVEV"
     gene            complement(7669..>8764)
                     /locus_tag="VGN19_05035"
     CDS             complement(7669..>8764)
                     /locus_tag="VGN19_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferredoxin reductase family protein"
                     /protein_id="HEV7195285.1"
                     /translation="GFTSFNLLWAHIVLITLGYAASSSKGLWGTIVSFVLDYPGMLLA
                     VAGTAALCMVVVTSVQKARAKLRYESWHLIHLYGYLGAGLALPHQLWTGQEFLRSTAS
                     TVFWWTLYAVCAGAVLVFRVAVPLYRSLSSPLRVEAVRQEGEGVTSVVVGGPGVARLD
                     VAPGQFFQWRFLDGQGWSRAHPFSLSAAPDGRHLRITAAQVGDGTDRLARVRPGTRVL
                     VEGPYGRLHPGVRTQRKVLLMGAGIGITPLRALLEGLDQAPGDVVLIHRARTADDLVL
                     ADELHELATRLGARYVTVPGPRVPGRASWLPASAAHLSDAEALTQLVPDVAERDVFLC
                     GAPGWMDAVRHAALAAGVPAHQLHLERFVY"
BASE COUNT         1346 a         3045 c         3087 g         1286 t
ORIGIN      
        1 gtcggctgtg caaggctggt cggtgtgttc atgagccgga tggtcagcgt gacgagtccc
       61 cacccgacgg ggaggcggac gagatgaatc gactcgcgca ctcgacgagc ccgtacctgt
      121 tgcagcacaa ggacaatccc gtcgactggc aggagtgggg gccggaggcg ttcgacgagg
      181 cccggcggcg agacgtgccc atcctgctct cggtcgggta tgccgcgtgc cactggtgtc
      241 atgtcatggc ccacgagtcg ttcgaggacg acgaggtcgc agctgcgctc aacgacggct
      301 tcgtcgcggt gaaggtggat cgcgaggaac ggccggatgt ggacgccgtc tacatgaccg
      361 ccacgagcgc gctcaccggc cacggaggtt ggccgatgac gtgcgtcctc accccagagg
      421 gcgagccgtt cttctgcggg acctacttcc cgaagcaaca gttcctgcac gttctcgccc
      481 aggtccgcga ggtctggacg aacgagcgcg accgggtgct cgagagtggc gctcacatcg
      541 cgacccggct cagagagatc actgcggccg gcagcccgca gcctctcgac gagaccgcgt
      601 tgggcgaggc cgtgggtgcg ctgcggcgtc agttcgacga ggcgcgtggc ggcttcggtg
      661 gggcgccgaa gttcccgccg tcgatggtgc tcgagttcct gctgcgccat cacgccagga
      721 ccggctcgac cgacgcgctg gccatggccc gaggcacctg cgaagcgatg gcccgcggcg
      781 gcatctatga ccagctcgcc ggagggttcg cccggtactc ggtggacgcg gcctgggtag
      841 tcccgcactt cgagaagatg ctctacgaca acgcgcagct gctccgggtc tatgcgcacc
      901 tgttccgcac cacaggggac cacctcgcgc ggcgggtggc cgccgagacg gccgcctttc
      961 tcgtgcgcga cctggggacg accgagggtg gcttcgcctc cgccctggac gccgacaccg
     1021 acggcgtcga gggcctgacc tatgcctgga ctccggccca gctggaagag gtgctgggcg
     1081 agcaggacgg ccgggctgcc gcccagctgc tggccgtgac cgcggtcggc agcttcgaac
     1141 acggcagctc gacgctccgg ctggcgaccg atccgacgga cccgcagtgg tgggagaggg
     1201 ctcgaaacct gttgtgggag aaccgcaacc gtcgacctca gccggcccgc gacgacaagg
     1261 tcgtcacgtc gtggaacggt cttgcgatcg ctgccctcgc cgacgccgcc atgctgctcg
     1321 aggatcccga gctccttgac gccgcccggc gctgtgccgc gttcgtggtg gccaaccacg
     1381 tggtcgacgg acgtctgcgc cgctcgtccc gggccgggcg cgtgggcgcg gcagctggcg
     1441 tggccgacga ctacgggaac cttgccgagg gcctgctcgc cctgtaccag gccagcggtg
     1501 aaccgcgctg gctggaggtc gctcagcagc tgttgcgcac cgcaaccgag cagttcaggg
     1561 atcaggacgg tgggttccac gacactgccg cggatgccga gccgctgctg ttccgcccgc
     1621 gcagcccgtc cgacaacgcc gaaccctcag gccagtcagc gctcgccggc gccctgctca
     1681 cctgctccgc gctgaccggc gaccccgagc tacgcgccct tgccgaagct ggcctcgcgg
     1741 cgtccggtct gctcgcatcg cgcgacccac ggttcggcgg ctgggcgctc gcggtggccg
     1801 aggcggccgt caccggaccc ctgcaagtcg cggtcgtcgc cgcccacccc gacgaccccc
     1861 aggccgcagc gctgcggcag gtcgcccgac gctccacctc accgggcctc gtggtcgacc
     1921 acgggtcacc cgacgaacct ggccacccac tcctggcgca gcgcccgctg gtcgacggcc
     1981 gtgcggcggc atacgtgtgc cgtgggttcg tctgtgacgc accggtaacc gaccccgagg
     2041 cgctcgtcgc cgccgtgagt cgctgaccgt tcagctcact gcaccaaggc gcgcagcgcg
     2101 gccacgtcgg gaaggtggat ccgcccgcgc gccaggacga ccagccctcg ttcggccagc
     2161 cccttcagca cccggttggt ggccggccgg gaggctcccg agagctcggc gaggtcgctc
     2221 tgggtgagcg gcaggactgc ctgcccgtgc tcgacgccgt agatcccgca caggtcgacc
     2281 agccgacgcc tgacccgctc ctcgacggtc gagtacaacg cgtcgacgag gtggtcggac
     2341 aggcgccgca ctcgggcggc cagcaggtcc accagcaggc ggttcacctc gggccgctgc
     2401 gccgtcaggg ccgcgaaggc tcgcgcgtcg agggcgagcg tgacgaccgg ctcgagtgcc
     2461 tggacggagg agctgcgtcg cccgtccggg ctcagcagcg cgagctcacc caccgcctcc
     2521 cccggtccca tgacggtgaa cgccgcccga tcgccggctg gtgtggtccg ctgcacgacg
     2581 atgtggccat cgacgatgaa gtggacacag tccgccaggt ctccctcatg aaagaggctc
     2641 tcccctcggg agaaatggcg ccgcaccatg agctcagcca cgcggcggcg ctccgcctcg
     2701 ggcaggccgc tcaacagttc cggcgtcatg gctgaagtgc agcaccgacc ggcgattccc
     2761 acaacgtggc ctaccgcacc gccgttgtgt catctgcgaa acagacccac gagccgcgcg
     2821 cgccgagagt gagtcatccg cacttgcggc caccacgaac cttgaggagg tcgtcatgac
     2881 aacccacccg caccgcgacc tggctcacca ccaccccatc gtccgtcgca ccgacctcgg
     2941 acgctggatg tggacctgca cgtgcggggg cgcctcgtgc cgcaccacga gccacacctg
     3001 gcaccaggtc atggtcgagg cgctcctgca ttccatgacg atcgctccgt gagaccagca
     3061 gcgctcacgg cattcgtccc cgacgggcgg ggcaggcgtt caccacggca gcggttgggg
     3121 ggccaacgct gcctgcgcct cagcgcgcag cgcctgctcc gcctccgcat agacctcttg
     3181 ggcctgtgcg gcggattcgg cgatcgccgt catgccgacc tgtccgcact cggtgatcgc
     3241 gctgatcatg tggaagacga cgccccgttg acgtgactgg tcgtagtgca tgccggcccg
     3301 agccacgagg tcgaagaggt cctcgacgcg cagaccgtgc aacagagggt cctggaggtg
     3361 gtcagtggcg accaggtggc gctcggctcc agagggcgtg aggaaccgcg ccgactgcgg
     3421 gtcgtaccgg ccgtccgtca ggaactggag cgtgaggaag gggtgggtcg tccctccctt
     3481 gcgcaggttg acctcgatgg cgtggctctc ccacaccggg ccgttgcgga ccactacgaa
     3541 gtcgatggcg aacctgccca tcaccccctt ccgcgcgagc acctcgccga tgcggaccgc
     3601 gtcggtcgtg atcaagggcg cgtatgccgg gtcggccgga aagcgggcac cgaggtagga
     3661 ctgcccgctc ggcccaccga gcacctggtc gtgcgtcgac aggatctcga ggatgccgtg
     3721 cggggttacg cgcagctgga cgctggggct gcgcacctcc tcgccgagga tccgttcctc
     3781 gacgatgccg cgtcgctgcg ccagcttggc gaggaacgcg tcgacgtcga cggccgggtc
     3841 ctccaacgac atctcgctca cccgtcgagc aagcgcggcg gcctcggcgg gactcccggg
     3901 ggtgggaaga ccggtgaggt cgacggtcgc gttgccggag ccggacaccc cctcgttgag
     3961 cttgaccatg gccgaccggg cagctggccg gcggacccgc agcgccgaga gcgcagcaac
     4021 cacctcgccg ggggtcgcga ggtgctcggc gcccgcgggg aaccgaacgc ccgcttcggt
     4081 gaacacctca cggcaccccg acttggtgcc cagcgggaag aggcgcgggt ctgcggcata
     4141 catcgggatg cccagctcga tcgccaggtc tcgctccagt gccgtcgtgt tgtacggcac
     4201 gaggtgacag cgatgcgggt ccgggatgag agagcggatc acggtcagca cccgggggcg
     4261 agcgagcagc ttctcggtca gcgctccggg tcgggcatcg cccacgctga cgaggtgcag
     4321 ccgcgagcgt gcatggctgg ggatcacccc cggcagcagt gacaggtagt actcgatgat
     4381 cgccgggtcg accgccaccg acgtcacgta gaccatccgc agtcgcggct gacgcagcag
     4441 caggagcatg aaaaggaacc gctcctccat cgcctgcgtc atccccgggc tggccgcgac
     4501 gacccggtcg acggtcagcg atggcaccac gacgacggac tcgagggggt cgccagtctg
     4561 catgccgtcc cacaccgcgg ggagccgttt ttgcagacgg tcgaacgcgg cataccgcgc
     4621 ggcctcgtca aggtcgccca gcgtcggggc gctcgacgtc ctcatgacga caccctcatg
     4681 acgacacgcc tattgcgaga cgctcagggg ctgcaggtcg agcacctcga acgcctcgac
     4741 ctggcgcgag aaccctttga ggtggagcgg gccgacgggc ttgctcttca ccactgcggt
     4801 gattccggag agcacgcgcg gcgtcaccag gatctggccg ttgcgggcct cggcgcacaa
     4861 ccgggccgcg aggttggtca ccgtgccgat ggcggcgtag tcgtagcgcc cctcgaaccc
     4921 gacgcggccc agggtggcgt aaccctgggc gatcccgacg ccgaacccga ggttgtgccc
     4981 ccgccagcgc caggtctcgg ccagatccgc cacgctgcca cgcatcgcga ccgccatgga
     5041 gaccgcccgg tccggggcgt cggtgcacgg caccgggtcg ttgaagaaga ccatcagtcc
     5101 gtcacctgcg aagtgctcga gggtcccttc gaaccggaag accagctcgc cgagggcgcg
     5161 gtggtagtca ccgagcaccg ccatcgtctc ctcgggttcc gcggtctcgg cgaaggcggt
     5221 gaagccgcgc aggtctgtga agacggtggt gatctcgcgg cgatgactga gcaggatgcc
     5281 gtcgtcgtcc cctctggcga ggatttcgcg ggccacctgg ggggcgagga agcgccgcag
     5341 ccggtcgagc cgctcgagct cggcgacctg gtccgcgacg cggcgtgaca gctcgcggtt
     5401 ccagtcgcgc agctcggccg cctgagaagt cacggtgtcg tggtagcgct tgatgcgcac
     5461 gagcgagcgc acccgcgcaa ggagctctgc ctggtcgaac ggcttggtga tgaagtcgtc
     5521 tgcgcccgct tcgaggccgc gcagccgcca ccgttcgcca ctggccgtga ccatcacgac
     5581 gggcaggaac gctgtcctcg ggtcggcccg gatcctgcga caggtctcgt agccgtccag
     5641 ctcgggcatc agcacgtcga gcaggacgac gtcgggcagc cgctccgcca ggatcgacat
     5701 ggcctcctgc cccgacgcgg cgaccaggac cgtgaagccg cgcggcgtga ggatggcgtc
     5761 catcagcctg cggttctggg ccaggtcgtc caccaccaga accgtgccgt catcggtcat
     5821 ggggcgcccc cttcaggtac tggcgcacct gctgcggaaa gtcacggacg ctgatcggct
     5881 tctcgaggta gccgtcgaag ccggcctcca gagcctgcgc ccggtcggcc gccatggcga
     5941 aggctgtgag ggcgacgacc ggtatgccgg cggtgcccgg ttgggcccgc agtcgggaca
     6001 gggccgtgcg accgtcgatg ccgggcagct ggagatccat caggatgaga tcgggctcgc
     6061 tgcgggacgc ctcggtcagc gcgtcctccc ccgtagtggc gacgagcacc gtgaagccgt
     6121 ggaactcaag caggtcgcgc gccagcttga ggttgcgctc gttgtcctcg accaatagga
     6181 ccgtacggct gggcgcgacc atccgagcct ccactccccc ggctgcactg gcgatgtgcg
     6241 gccagcaacc tttgaagtgt gctctcaaac cctggccctt gcctacaacg aaggggtgat
     6301 gactgcgttt gcaaggggtg agcgccgacc cgagccgggc gccgagccga ggtcgcttcg
     6361 ggggctcaga gcaccaggca gcggtatgcc gggtcggtca gagccagccg cgtgcggccc
     6421 gcgtcggggt cgacgaacag ggccgtcgcc cagacatcgg cccacatgag gctgggaccc
     6481 cagacggtgg cggacccttc gcggttgacg acgttgccgt cgcgtgggtc gagaatgtgg
     6541 gctcccctgg cagcatttcc cgaggtggcc aggccgccct cggtcagtgg caccatcgcc
     6601 tcgaccgtgc cgcccactcg cgggttctcg atgccgacct gccaggtcga cggctgcgcc
     6661 cactgccctc ggccggccac caggtctccg ccggcgttga tgcagaacga gatccgcggc
     6721 actccggcca gcagctgggc ggccctctcg accgcccagc ccttcacgag cccggtgggg
     6781 tcgtagttgt ccctacctgc ggcggtggcg ctgaagagcc cagccgttcg gtccgtggcc
     6841 tcagcacaga gggcctccac ctcggccagc caggggtggg cgtgctgcgg ggacagctcg
     6901 tctcgccgca accgcatgag ctcactgtcg ggccgccacg tgctgaacac ctcgtcgacc
     6961 cggcgcaaca tgctccacac ctggccgacg ccgaccccga cctccggagc gtcgacctcg
     7021 ccgcgcacgt ggacgctgat cggcataccc atgacctgct ccacgaacgc cttgcgcggc
     7081 ggggtggaca cggcgctcac agatgggcct ggtcgatcgc cgactgcagc gactggatgt
     7141 agccgttgga ggtgaaggtc gcgcccgaga ccatgtcgat gctcgcactc tgctgctgga
     7201 ggacctcggc gttgagctgc ggcacggctt gggagttgat ctcctggtcc cggggatcgg
     7261 tgtacgggac ctgcaccgcg atcgacttgg tgatcttgcc gttcgtgacg gtgatctgga
     7321 cctgcacggg gccgtactgg gtgtcgatcg cggtgccggt gtaggtcttc gtcacgctgg
     7381 tcgtactgga cttcgtggtg gacgaggtgc tcggccccga gctcgtgctc gcgctcgagc
     7441 ccgtcgtggc ggagctcgaa gcggtcgacg gtgtcgtggt cgtggtggtc gtcgcgggcg
     7501 tctgggtgcc gttgacagtg ccgttgacgg tgccgttgac ctgggctacc acgctggaag
     7561 cggccgtcgt gcccgcgctc gaggtcgagg tgtgatagct gaacaagagc acaagggtgg
     7621 tcagcgtgga cagtgcccac agggtgatgc gtcgcatcgc ggtgctcctc agtagacgaa
     7681 tcgctcgaga tggagctggt gggctgggac gcccgcggcc aaggccgcgt ggcggaccgc
     7741 gtccatccac ccgggggcac cacagaggaa gacgtcgcgc tcggccacgt cgggcaccag
     7801 ctgggtcagc gcctccgcgt cgctcaggtg agcggcgctg gcgggcagcc aggacgcccg
     7861 gccgggcacc cgtggcccgg gcaccgtgac gtatcgcgct ccgagtctgg tggccagctc
     7921 gtgcagctcg tcggccagga cgaggtcgtc cgcagtgcgc gcccgatgga tcaggacgac
     7981 gtcaccgggc gcctggtcga gtccctcaag caaggcgcgc agcggcgtga tgccgatgcc
     8041 ggctcccatg agcagcacct tgcgctgggt gcgcacgcca gggtgcagcc ggccataggg
     8101 accctccacg agaaccctgg ttcccgggcg aacccgggcg agacggtcgg ttccgtcgcc
     8161 gacctgggcc gcagtgatgc gcaggtgacg gccgtcaggg gctgcggaga gtgagaacgg
     8221 gtgggcccgg gaccacccct ggccgtcgag gaagcgccac tggaagaact gcccgggggc
     8281 gacgtcgagc cgagcgactc ctggccctcc caccacgacc gaggtgaccc cctcgccctc
     8341 ctgccggacc gcctccaccc gaagcggcga gctcagcgag cggtacagcg gcacagccac
     8401 gcggaacacg agcaccgcac cggcgcacac ggcatacaag gtccaccaga agacggtcga
     8461 ggcggtggag cgcaggaact cctgcccggt ccacagctgg tgcggcaacg cgaggccggc
     8521 cccgagatag ccgtagaggt ggatgagatg ccaggactcg taccgcagct tcgcacgcgc
     8581 cttctggacc gacgtcacga cgaccatgca gagcgcggcc gttcccgcta cggcgagcag
     8641 catcccgggg tagtccagga cgaagctcac gatggtgccc cacaagccct tggagctgct
     8701 cgcggcatac ccgagggtga tgagcacgat gtgggcccac aggaggttga acgaggtgaa
     8761 gccg
//
LOCUS       DASYFY010000251         1966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_701336, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000251 DASYFY010000000
VERSION     DASYFY010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701336"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VGN19_05040"
     CDS             <1..535
                     /locus_tag="VGN19_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017203085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEV7195286.1"
                     /translation="CADHLVEQGWVAPDRLAAEGGSAGGLLIGAALNLAPQRFRAVHA
                     AVPFVDALTTILDPSLPLTVVEWEEWGNPLADPEVYAYMKSYSPYENVRDGAPYPAVL
                     ATTSLNDTRVYFTEPAKWVARLREATSSDPAARPVLLRTEMVAGHGGKSGRYDSWRQL
                     AWEWAFLIDQLGAAPRS"
     gene            694..>1966
                     /locus_tag="VGN19_05045"
     CDS             694..>1966
                     /locus_tag="VGN19_05045"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEV7195287.1"
                     /translation="MDEWPIQLRHAWDLAVDCLLPMALLCGDDSTMLYNASFADLLGT
                     QHPHAFGRPAAGVLPELGEVPGAAPRLEAGFGAGEPFLEEGTQLSLRRSEAHGASPDV
                     GFYLRAGSPVRDDDGTVVAVLHVVIETTQALRRAHAVARLATSLAMAVSVDDVCKVVL
                     RQSLTALDAISATICLPSPGPAGWRMARRHRIEELSSDEERLPLIWSEIGEDIAALVA
                     LVTASGRPHLAANGEHVALPLRAGSSGAVLLVARQAEPIPSDVTTMVDALSELVGDVL
                     GRAVVFDAERATAELLQRTLLPPNLPQSDAVSIAARYEPVSKGRPAGGDFYDSFFLPD
                     GRLSVVIGDVVGRGVMAASVMGQVRAAVRGAALTHSDPGSVMATLDRVVQELDALWPA
                     SMPLGATRARPGMAFGGELFVTMLFGIVDPET"
BASE COUNT          254 a          677 c          710 g          325 t
ORIGIN      
        1 ctgcgccgat catctggtcg agcaggggtg ggtggctccc gaccgtctgg ccgccgaggg
       61 gggttccgcc ggaggactgc tgatcggggc tgcgctcaac ctggccccgc agcgcttccg
      121 agcggttcac gcagccgtcc ccttcgtgga tgcgctgacg acgatcctcg acccgtcgct
      181 gccgctgacc gtcgtggaat gggaggagtg gggaaacccg ctcgcggacc ccgaggtcta
      241 cgcctacatg aagtcgtact ccccgtatga gaacgtgcgc gacggtgcgc cctatccggc
      301 cgtgctggcg accacgtcgt tgaacgacac cagggtctac ttcaccgagc ccgcgaaatg
      361 ggtggcccgg ctgcgagagg ccaccagcag cgaccccgcg gcacgaccgg tgctgttgcg
      421 cactgagatg gtcgccggcc acgggggcaa gagtgggcgc tacgacagct ggcggcagct
      481 ggcctgggag tgggcgttcc tcatcgacca gctcggggca gctccccgaa gctgaggccc
      541 gccgaaattt ccgccccctg acgccctcat gggactgggt gcggtcatac gctcttggcg
      601 agagggaggg cgcacacggt ggttgatggc agggcatccg aggcgaggcg cctcgccgag
      661 acctgggact gggcgtcgac cagcctaggt cctgtggacg aatggccgat acagctgcgg
      721 cacgcctggg acctggctgt cgactgcctg cttccgatgg cactgctgtg cggcgatgac
      781 tccacgatgc tgtacaacgc ctcgttcgcc gacctcctcg ggacccagca tccgcacgcc
      841 ttcgggcggc cggcggccgg cgtcctgccc gagctggggg aggtgcctgg ggccgctccg
      901 cgtctcgagg cggggttcgg agcaggtgag ccgttcctcg aggagggcac gcagctgtcg
      961 ctgcgacgct ccgaagccca cggcgcctcc cccgacgtcg gcttctacct gcgggccggt
     1021 tctccggttc gcgacgacga cggaaccgtc gtggcggtgc ttcatgtcgt catcgagacc
     1081 acccaggcgc tccggcgcgc ccacgcggtc gcccgcctgg ccacctccct cgccatggcg
     1141 gtgtcggtcg acgacgtctg caaggtggtg ctgcgccagt ccctgactgc actcgatgcg
     1201 atttcggcca ccatctgcct tccctctccg ggcccggcgg gctggcggat ggctcgccgg
     1261 caccggatcg aggagctgtc gtcggacgag gagaggctgc cgctgatctg gtccgagatc
     1321 ggggaggaca tcgctgctct ggtggctttg gtgaccgctt cggggcgtcc gcatctggca
     1381 gccaacgggg agcacgtggc actgccgctg cgcgcggggt cgtccggggc ggtgctgctg
     1441 gtggcccgcc aggccgagcc catcccctcg gacgtgacca cgatggtgga tgccctgtcc
     1501 gagctcgtcg gtgacgtcct ggggcgagcc gtcgtgttcg acgcggagcg cgccaccgcg
     1561 gagctgctcc agcgaactct cctgccgccc aacctgccgc agtccgacgc ggtcagcatc
     1621 gcagcccgct acgagccggt gtcgaagggc cggccggcgg gcggtgactt ctacgactcg
     1681 ttcttcctgc ccgacggccg gctgtccgtc gtgatcggtg atgtcgtggg gaggggggtg
     1741 atggcggcga gcgtgatggg ccaggtccgc gcggccgtcc gtggggccgc cctgacgcac
     1801 agcgaccctg ggtccgtcat ggccacgctc gaccgggtgg ttcaggagct ggacgcctta
     1861 tggcccgcgt ccatgccgct cggcgccacc cgcgcccgtc cgggcatggc gttcggcggc
     1921 gagctgttcg tcaccatgct ctttggcatc gtcgaccccg agaccg
//
LOCUS       DASYFY010000252         5539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_176379, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000252 DASYFY010000000
VERSION     DASYFY010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5539
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176379"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..467)
                     /locus_tag="VGN19_05050"
     CDS             complement(147..467)
                     /locus_tag="VGN19_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3099 domain-containing protein"
                     /protein_id="HEV7195288.1"
                     /translation="MNRPHRAHHPVTPVQSVTAVPQSLAEEQASRIKRYLLTMAVRTV
                     CFLGAAVSGMQGAPWWVWGSLAIAAIVLPYVAVVMANAVRPRPPGSSSPVLPSDEGPE
                     RLER"
     gene            617..1327
                     /locus_tag="VGN19_05055"
     CDS             617..1327
                     /locus_tag="VGN19_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP reductase"
                     /protein_id="HEV7195289.1"
                     /translation="MAGRNVLVTGGNRGIGLSIAQALSDAGHQVVVTHRSGEPPQGLR
                     GVRCEVTDSASVDAAFTEAEQLLGGSVDVLVANAGITKDTLLMRMTDEEFDSVVDTNL
                     AGAFRCARRAVKGMIRQRHGRIVFISSVVGLYGSPGQANYAASKAGLVGLARSISREL
                     GGRGITANVVAPGFIETDMTAELPEDRKKAYQATIPAGRFAQPEEVAAAVRFLVGDDA
                     AYITGAVIPVDGGLGMGH"
     gene            1371..2129
                     /gene="fabI"
                     /locus_tag="VGN19_05060"
     CDS             1371..2129
                     /gene="fabI"
                     /locus_tag="VGN19_05060"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEV7195290.1"
                     /translation="MLLEGKKLLITGVLMDSSIAFHVAKIAQEQGAEVVLTSFGRTFK
                     ITQTIAKRLPSTPPVIELDVTNPEDLETLSERLGEHVDHLDGVLHSIGFAPQGAFNFL
                     EGTFEDVATAMHASAYSLKSLGVAALPLMREGGSIVGLTFDAKFAWPVYDWMGVAKAA
                     FESTNRYLARDLGPKGIRCNLVAAGPIRTTAAKSIPGFQTFEDTWNTRAPLGWDVNDA
                     VPAAKACAALLSDWFPATTGEIVHVDGGVHAMGQ"
     gene            2175..4361
                     /locus_tag="VGN19_05065"
     CDS             2175..4361
                     /locus_tag="VGN19_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEV7195291.1"
                     /translation="MTTESAVAVSEVRVLEGPNLYFAKPAIKVSLELPGYLDADTTTL
                     LGLARHIGIRSARPGSPGTEQRQRFVMRVVERAVRLLAQASGTSRLGVRVRAGQAPDQ
                     VVAAFVWRRRGRGQGLGHGIGPVLAAWLEGGDVVEEHGRLISQGDPGERPSILRPTIP
                     VASITGTNGKTTTTRLLGHIGMTAGLRTAWSSTDGIVVQGETIQDGDYSGPAGARGVL
                     TAPGVQLGILETARGGMLLRGMGVWTNDVSVVTNVSADHLGLHGIDTVDQLAEVKAIV
                     TKATKPKGWVVLNGEDPRVWAMRSGIKARPWVFTLRSDAPAIRESLDQGGRAITVLDG
                     EITVLESGQDPDRLVSILDVPATLSGLSQHNIANCLAGAAAALGLGLPRAAVVEGLRT
                     FAPDDRLNPGRMNTYTVKRGDGASVTVIVDLAHNEAGLEALMDVAHGLKAPGGQVHLG
                     LGLAGDRTDELLESIGELAGLRADRIVAAHKEHYLRGRTMHELEGHLRAGLARAGVAD
                     IESFDTELSGLQALVPSAADGDVVALMCHSERAQVAAWLAQQGATPDTPDDIRRKVVA
                     ARGEHEFEDQITVLWAMPDEQARPAAVAKLRAQRPGDPRLAYELAGSYDAAGQEQEAI
                     PLYREALAAGLREPYRHRARIQLASSLRAVGQPDLAYSLLTELAVERPGNTAVEAFRA
                     LAGLDSGRANQAVADLVDALLHHSGDEDSLAYGHVLHAYAAELRAR"
     gene            complement(4415..>5539)
                     /locus_tag="VGN19_05070"
     CDS             complement(4415..>5539)
                     /locus_tag="VGN19_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEV7195292.1"
                     /translation="LREGLGYDRTDVAVVTNVAPDHLGMKGIDTLEQLAEVKAVVVEA
                     VPRDGFAVLNADEPLVRKMRRRCSGGIVWFSLEAPGSKVRELIDDHCRRGGRAVVLEP
                     TDRGDMIVIKHGRRSMQLAWTHLLPSTFGGTAKFNVANAMAAAGAAFAAGAGLHEIRQ
                     GLRTFTTSYYLSPGRMNFVNVHNVDVFVDYCHNAPGMRVLGEFVEGYAAQKAGQAELG
                     KVSRIGMISTAGDRRDDDMRELGAIAARHFDVVVVREDQRLRGRVRGETARLIVEGAQ
                     GQIGAEGVRCRQVEMVLSEVDAVRHCMARANPGDVVVLCVDNHAEVLNELELMTQSAQ
                     PGAHSAHGIGDPDLDPVELQSEAQVSGDEAAAAETEPAHG"
BASE COUNT          861 a         1921 c         1923 g          834 t
ORIGIN      
        1 gaggaagtcg ccaagggtcc ctcggtgcgc ctcgcacgcg agccagacct tgcgtcgctc
       61 gggagtatgc agcttggggt tgttccacag gtgggcccag gttgcggggg cacggcagcc
      121 cttggcactg cagaccaggt ccgccactat cgttcgagcc gttcgggacc ctcatcactg
      181 ggaagaactg gcgaactact gccgggtggg cggggtcgga ccgcgttggc catgaccact
      241 gcgacgtacg gcagcacgat ggccgcgatg gccaggctgc cccagaccca ccacggcgca
      301 ccctgcatgc cgctcacagc ggcgccgagg aagcacacgg tacgaacggc catggtcagc
      361 aggtaccgct tgatccggga ggcctgctcc tcggccaggg actgcggcac cgcggtcacc
      421 gactgcaccg gggtgaccgg gtgatgcgcg cggtgcggtc ggttcacccc tccacgatat
      481 gccgcctgcg atgcggtgta cccgtcggta gtcgataggg tcgcgaccgg aggcgccggc
      541 tggtgacagg ccgtcctcga acgtagcgtc gagacattgc atcgagacat ttgcttcgaa
      601 ctcacggagg acgtccatgg caggccggaa cgtgctggtc acgggtggca accgcggaat
      661 cggtctgagc attgcgcagg ccctcagcga cgccggtcac caggtggtgg tcacgcaccg
      721 ttcgggcgag ccaccacagg gtctgcgtgg ggtgcgctgc gaggtgaccg actccgcgtc
      781 cgtggatgcc gccttcaccg aggccgaaca gctgctgggc gggtcggtgg acgtgctcgt
      841 ggccaacgcc gggatcacca aggacaccct gctcatgcgg atgacggacg aggagttcga
      901 ctccgtcgtc gacaccaacc tggctggagc gtttcggtgc gccaggcgag cggtcaaggg
      961 gatgatccgg cagcgtcacg gtcggatcgt cttcatctcc agcgtggtcg gcctctacgg
     1021 ctcgcccggg caggccaact acgccgccag caaggctggc ctcgtggggc tggcgcggtc
     1081 gatctcccgc gagctggggg gccgaggcat cacggccaac gtggtggccc ccgggttcat
     1141 cgagaccgac atgaccgctg agctccccga ggaccgcaag aaggcctatc aggccaccat
     1201 cccggccggc cggtttgccc agcccgagga ggtggccgcc gcggtgcggt tcctggtcgg
     1261 cgacgacgcg gcatacatca ccggagcggt catccccgtc gacggtggcc tcgggatggg
     1321 ccactgaccc cgcgtcacca cctctcaccc cccgcgaaag ggacctcacc atgctgctcg
     1381 agggcaagaa gctcctgatc accggcgtcc tcatggactc ctccatcgcc ttccacgtcg
     1441 ccaagatcgc gcaggagcaa ggggccgagg tggtgctgac gtcctttggt cgaacgttca
     1501 agatcaccca gaccatcgcc aagcggctgc cgagcacgcc gccggtcatc gagctcgacg
     1561 tgaccaaccc tgaggacctc gagactctgt cggaacggct gggcgagcac gtcgaccacc
     1621 tcgacggcgt gctgcactcg atcggattcg ctccgcaggg tgccttcaac ttcctcgaag
     1681 gcaccttcga ggacgtcgcc accgccatgc acgcctcggc atactcgctg aaaagccttg
     1741 gcgttgctgc ccttccgctc atgcgtgagg ggggcagcat cgtggggctg accttcgacg
     1801 cgaagttcgc gtggccggtg tacgactgga tgggggtggc gaaggcggcc ttcgagtcga
     1861 ccaaccgcta cctcgcccgc gacctcggtc ccaagggcat ccgctgcaac ctggtggccg
     1921 ccggtccgat ccgcaccacg gctgccaagt cgatacccgg cttccagacg ttcgaggaca
     1981 cctggaacac gcgggctccg ctgggttggg atgtcaacga tgccgtgccc gccgccaaag
     2041 cctgcgccgc tctgctctcg gactggttcc ccgcgacgac gggcgaaatc gtccacgtcg
     2101 acggtggcgt ccacgccatg gggcagtgac caccgagtcc agtttgtccg tccttcacga
     2161 ttaggctccg ctgcatgacg actgagtccg ccgtcgcggt cagcgaagta cgggtcctcg
     2221 agggccccaa cctctatttc gccaagccgg ccatcaaggt cagcctcgag ctgcctgggt
     2281 acctcgatgc cgacaccacg accttgctgg gactggctcg ccacatcggc attcgcagtg
     2341 cgcgtcctgg ctcgccaggc actgagcagc gacagcggtt cgtcatgcgg gtggtggagc
     2401 gggccgtgcg cctgctggcc caggccagcg ggacgtctcg gctgggcgtc cgcgtgcgcg
     2461 ctggtcaggc tcccgaccag gtcgtggccg cctttgtctg gcgcagacgc ggccgcgggc
     2521 agggactggg acacggaatc gggcccgtgc ttgcggcgtg gctcgagggc ggtgacgtcg
     2581 tcgaggaaca cggccgactg atcagccagg gcgacccggg cgagcgaccg tcgatcctgc
     2641 ggcccaccat cccggtcgcc tcgatcaccg gcaccaacgg gaagacgacc acgacgcggc
     2701 tgctcggcca tatcgggatg accgcggggc tgcggaccgc ctggtcctcg actgacggca
     2761 tcgtcgtcca gggggagacg atccaggacg gcgactactc cgggccggcc ggcgcccgcg
     2821 gggtgcttac cgcaccgggc gtccagctcg ggatcctgga gacggcacgg ggaggcatgc
     2881 tgctgcgcgg gatgggggtc tggaccaacg acgtgagcgt cgtgaccaac gtgtcggccg
     2941 accatctggg cctgcacggc atcgacaccg tcgaccagct ggccgaggtg aaggccatcg
     3001 tcacgaaggc caccaagccc aaggggtggg tggtgctcaa cggcgaggac ccccgggtgt
     3061 gggcgatgcg gtccggcatc aaggcccgac cgtgggtgtt cacgttgcgc tccgacgcac
     3121 cggccatccg cgagtcgctc gaccagggcg ggcgcgccat caccgtgctg gacggcgaga
     3181 tcacggtgct ggagagcggc caggaccccg accgtctcgt cagcatcctg gacgtgccag
     3241 cgaccctgtc cggcctgtcc cagcacaaca tcgcgaactg cctggccggt gctgccgcgg
     3301 ccctgggcct aggcctgccg cgcgccgcgg tcgtcgaggg actgcggacg tttgcgccag
     3361 acgaccgcct gaacccgggc cggatgaaca cctacacggt gaagcggggc gacggggcca
     3421 gcgtcactgt gatcgtcgac ctggcccaca acgaggccgg cctggaagcg ctgatggacg
     3481 tggcgcacgg cctgaaggcg ccgggcgggc aggtccacct cgggctcggg ctcgccggcg
     3541 accgcaccga cgaactgctc gagtcgatcg gtgagctcgc agggcttcgc gctgaccgga
     3601 tcgtcgccgc tcacaaggag cactacctgc gtgggcgcac gatgcacgag ctggagggcc
     3661 acctacgggc cggtctggca cgtgctggcg tcgccgatat cgagtccttc gacaccgagc
     3721 tcagcggcct gcaggcgctc gtcccgagtg ccgctgacgg ggacgtcgtg gcgctgatgt
     3781 gccactccga acgggcccag gtcgcggcgt ggctggcgca acagggcgcc actcccgaca
     3841 ccccggacga catccggcgc aaggtggtcg cagcccgcgg cgaacacgag ttcgaggacc
     3901 agatcaccgt gctgtgggcg atgcccgacg agcaggcgcg ccccgcggcg gttgccaagc
     3961 tgcgcgccca gcgccccggc gacccgcggc tggcctacga gctggccggc agctacgacg
     4021 ccgctggtca ggagcaggaa gccattcctc tctaccgcga agccctggct gcgggtctgc
     4081 gggagccgta ccggcaccgc gctcggatcc agctcgcctc cagccttcga gccgtgggcc
     4141 aacccgacct ggcctactcg ttgttgaccg agctcgccgt cgagcggccg gggaacaccg
     4201 cggtcgaggc ctttcgcgcg ctggccgggc tggacagcgg gcgcgcgaac caggcggttg
     4261 ccgacctggt cgatgccctg ctgcaccact caggcgacga ggactccctc gcctatgggc
     4321 acgtcctgca cgcgtatgcc gcggagttac gcgcgcggta gcccccggac cgccctcgga
     4381 gccccaccgg agcggggcgg ggcgccgacg ctgatcagcc gtgtgcgggc tcggtctccg
     4441 ccgcggctgc ctcgtcccca gagacctggg cctcggactg cagctccacc gggtcgaggt
     4501 cggggtcacc gatgccgtgc gcagagtgag cgcccggctg ggccgactgc gtcatgagct
     4561 cgagctcgtt gaggacctcg gcgtggttgt cgacgcagag caccaccacg tcaccgggat
     4621 tcgccctggc catgcagtgt cgcaccgcat cgacctcgga tagcaccatc tccacctggc
     4681 ggcagcgcac cccctcggca ccgatctgcc cctgcgcacc ctcgacgatg aggcgggcgg
     4741 tctcgccccg gacgcgtccg cgcagccgct ggtcctcgcg gacgacgacc acatcgaaat
     4801 ggcgagccgc gatggcgccg agctcccgca tgtcgtcgtc gcgccggtct ccggcggtgg
     4861 agatcatccc gatccgagag accttgccaa gctctgcttg gccggccttc tgggcggcat
     4921 acccctcgac gaactcaccg agcacccgca tgcctggcgc gttgtggcag tagtcgacga
     4981 agacgtccac gttgtgcacg ttgacgaagt tcatccggcc aggggagagg tagtagctcg
     5041 tggtgaaggt gcgcaggccc tgccggatct cgtgcaggcc ggcacccgcc gcgaaggcgg
     5101 caccggcggc ggccatggcg ttggccacgt tgaactttgc ggttccgcca aaggtggagg
     5161 gcagcaggtg cgtccaggcc agctgcatcg agcgacggcc gtgcttgatg acgatcatgt
     5221 cgccgcggtc ggtcggttcg aggacgacgg cgcggccgcc gcgtcggcag tggtcgtcga
     5281 tgagctcacg gaccttgctg ccgggcgcct cgagcgagaa ccacacgatg ccgcccgagc
     5341 agcgtcgccg catcttgcgc actagcggct cgtcggcgtt gagcactgca aaaccatcac
     5401 ggggtacggc ctcgacgacg acggccttca cctcggccag ctgctcgagg gtgtcgatgc
     5461 ccttcatgcc caggtggtcc ggagcaacgt tcgtgaccac cgcgacgtcg gtccggtcgt
     5521 atcccaaccc ctcgcggag
//
LOCUS       DASYFY010000253         5671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1174413, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000253 DASYFY010000000
VERSION     DASYFY010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5671
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1174413"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..565
                     /locus_tag="VGN19_05075"
     CDS             98..565
                     /locus_tag="VGN19_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195293.1"
                     /translation="MKSRVMLASLTACLALTGTGIWLAEARTAPQVSQTDNAPARRAF
                     EVAMNLRQSAPGAAVPTSARHLIAIDQFRSGGGSADHFTYTRNERVDPQHVRLDGSYI
                     ARSTVFLPDRNGQLVRADPSNVLDFTAQLEKDAATGQWTVASFDWHFAPGSEP"
     gene            complement(593..1582)
                     /gene="selD"
                     /locus_tag="VGN19_05080"
     CDS             complement(593..1582)
                     /gene="selD"
                     /locus_tag="VGN19_05080"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018771022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEV7195294.1"
                     /translation="MTTLSTPVRLTQYAAGGGCACKLPPGELQEVLRGLGGQSSPDLI
                     VGLDTGDDGAVVRIAGDVAVISTADFFTPVVDDAYDFGRIVAANALSDVYAMGGRPVL
                     AINLVGWPRSVLPLELLREVLRGGLAVAEEAGCPVGGGHSIDDPEPKYGMAVTGVADP
                     NRLLRNDAAVAGLPLSLTKPIGVGMLNNRHKATGEVFPQAVESMTALNAAASAAALAA
                     GVVAATDVTGFGLLGHLFSMLRASGVGAVLDSAAVPVLDGAVGALRDGYVSGGTRRNL
                     EWVRPHLDSGLGEDKLLMLADAQTSGGLLIVGEVPGAPVIGYTVAGPPRIRVA"
     gene            1607..1702
                     /locus_tag="VGN19_05085"
     tRNA            1607..1702
                     /locus_tag="VGN19_05085"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1642..1644,aa:Sec,seq:tca)
     gene            1719..3044
                     /gene="selA"
                     /locus_tag="VGN19_05090"
     CDS             1719..3044
                     /gene="selA"
                     /locus_tag="VGN19_05090"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEV7195295.1"
                     /translation="MPQAHPTDARRLVPRTDTVLANPQVAQAISRLGRDTVLVAVRAA
                     QERARTGELPPDGVVDATLASLPERATTMTPVLNATGVVVHTNLGRAPLSAAAVDAIT
                     AAAGSVDVELDLITGKRSRRGRGVIAALLEAVPQAEAALVVNNGAAALVLATTALAAG
                     REVVVSRGELVEIGDGFRLPDLIVSTGARLREVGTTNRTTLADYEAAIGPDTGCILKV
                     HPSNFRVEGFTSSVPVTALATLGLPVVHDLGSGLLHPHPLLPQEPDAAGSLVDGAAVV
                     TFSGDKLLGGPQAGIVLGNRDTVERLRRHPLARAVRADKTTLAALEATVRGPRPPVWD
                     ALEAAPEVLHERCEALVAALPSELGAVTVPADGVVGGGGAPGQPLPGWAVALPERYAA
                     SLRQLPHPVLARVERGRCLVDLRCIAPRDDAAVGAAIILAGESAAPEAP"
     gene            complement(3046..4611)
                     /locus_tag="VGN19_05095"
     CDS             complement(3046..4611)
                     /locus_tag="VGN19_05095"
                     /inference="COORDINATES: protein motif:HMM:NF019913.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195296.1"
                     /translation="MSTLEDLTAGPGGMAGIVGALSRRFRPVTRRNLLVGATVAAAAL
                     ATKPKEFALRPVGAYATICGPGNVASAGWTVFCCTINKGVNACPPGSFAAGWWKAADS
                     SWCGSGYRYIVDCNASCSRCTTGCGTSGLCSSSCWSCSCGSGSTATCDQRRVCCNAFR
                     YGQCNTQVRCSGGVHCRVVSCVAPYKWANCTTTSLVDNRTSEHSAPCLPAWGAIEQRY
                     MALGDQASFLKASTGPNRSVGDRLGGVYVTYQGGAIYWTSGTGAQPVGTLALRAWSAI
                     GGVSGPLGYPTNASGPGARASGWIQLFQGGALAGATGAVVLPVYQPSWAVWVANAREA
                     GALGYPTVSRVANPDGIGWHQQFQGGLITASTGTQAVAVAAPIADVWVQNGREGGPLG
                     YPTDIRRSAGTAWLQLFEHGAIAGSSSTPTVAVAGVMYAGWVANGGPSGLLGYPVTSV
                     ARGSQGGNQQFQGGELWALHAGPARLVYGSVLTAWKNAGGAGGGYGYPLTDTTATGDG
                     RLTCTFEHGTITA"
     gene            complement(4608..5129)
                     /locus_tag="VGN19_05100"
     CDS             complement(4608..5129)
                     /locus_tag="VGN19_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195297.1"
                     /translation="MADTYGLTAQAPRGWHVAVTRRPGALPPAAGLRKLSAATPLEDL
                     TRPVLHACTRPMPADRGDFGTGAVDLLGPDDVFVAVVDYGPEVADQGLFERQGMPKLA
                     PSQFAPNRLQRPLPGMSAAQHFFSSGGRAFCLFVVLGSHARRMASVPRAAALVRTVHI
                     TDRATLTRQGGRP"
     gene            complement(5133..>5671)
                     /locus_tag="VGN19_05105"
     CDS             complement(5133..>5671)
                     /locus_tag="VGN19_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195298.1"
                     /translation="TTAYLVGSLAGGFALGGLAGLVGQVVPTAARTSHWSLGVLALLC
                     FAGLVLDLRGAQSVPSWRRQVDERWLTAYRGWVYGLGFGVQLGFGLVTIITSTSTYAV
                     VLLAALSGQVGAGLAIGGTFGLVRALPSLLMARVQDRRRLHDAFDMIERWAVSGRVVA
                     RLALGVAGVVLGAAAVGS"
BASE COUNT          907 a         2110 c         1876 g          778 t
ORIGIN      
        1 ccggccttcg aaaagaagct ccccacggga actgcgacgt acaccccggg gaaatgcctt
       61 cgcactcgtc gacgaaaccg gcaggacggg acctgagatg aagtcacgcg tcatgctcgc
      121 ctcgctgact gcctgcctgg ccctcacggg aaccgggatc tggctcgccg aggcccgaac
      181 tgcgccacag gtctcccaga ccgacaacgc gcccgcgcgg cgggcctttg aagtggcgat
      241 gaacctacgt cagtcagcac ccggcgcggc ggtccccacg agtgcgcgtc acttgatcgc
      301 catcgaccag ttcagatcgg gcggcggctc cgcagaccac ttcacgtaca ccaggaacga
      361 gcgcgtcgac ccccagcacg tgcgcctgga cggcagctac atcgcgcgct cgaccgtctt
      421 tctccccgac aggaacggcc agctcgttcg ggcggatccc agcaacgtcc tcgacttcac
      481 ggcacagctg gaaaaggacg ccgccacagg tcaatggacc gtggcgtcgt tcgactggca
      541 cttcgccccc ggcagcgagc cataggcggg gaagaaaccg gcgacctcag ccctaggcga
      601 cgcggattcg aggaggccca gccacggtgt acccgatgac cggcgccccc ggcacctcac
      661 cgacgatgag cagcccacca ctggtctgcg cgtcggccag catgagcagc ttgtcctcgc
      721 caagcccact gtcgaggtga ggacgcaccc actcgaggtt gcgtcgagtc cccccgctga
      781 catacccatc ccgaagcgct ccaacggcac catcaagcac cggaacggcg gccgagtcga
      841 gcacggctcc gactcctgaa gcgcgcagca tcgagaacag atgccccagc agcccgaacc
      901 ccgtgacatc cgtcgccgcc acgaccccag cagccagagc cgcagcactc gcggccgcat
      961 tcagcgcagt catcgactcc accgcctgcg ggaacacctc accggtggcc ttgtgccggt
     1021 tgttgagcat ccccaccccg atcggcttgg tcaggctcag cggcagcccg gcaaccgcgg
     1081 catcgttgcg cagcaaccgg ttcgggtccg ccacccccgt gacagccatg ccgtacttgg
     1141 gctcgggatc gtcgatgctg tgacctccgc ccaccgggca cccggcctcc tcggccaccg
     1201 ccagaccacc gcgcagcacc tcgcggagca gttccagcgg cagcacggac cgcggccagc
     1261 cgacgaggtt gatggccagc actggccgtc cacccatggc atacacgtcg gacagcgcgt
     1321 tcgcggccac gatccggccg aagtcgtacg cgtcgtcgac caccggagtg aagaagtccg
     1381 cggtgctgat cactgcgacg tcgccggcga ttcggaccac ggcgccgtcg tccccggtgt
     1441 ccagaccgac gatgaggtcc gggctcgact gcccaccaag cccccgcaga acctcctgga
     1501 gctcgccggg cgggagcttg caggcgcagc cgccgccggc ggcgtactgg gtcaaccgca
     1561 caggtgtgct cagcgtggtc atgctgccta cgctagcctc gccagcggag gcgtacaggc
     1621 gcctggtggc cctcccggtc ttcaaaaccg gtgcagccga gtagctcggc tgggcgggtt
     1681 cgattcccgt ccgcctccgc cacccgacag gaggccgtat gccgcaggcg caccccaccg
     1741 acgcgcgtcg cctggtcccc cgcaccgaca cggtgctcgc gaatcctcag gtggctcagg
     1801 cgatctcgcg gctgggtcgg gacaccgttc tggtggcagt acgcgcggct caggaacgtg
     1861 cccgcaccgg tgagctgcca cccgacggcg tggtcgacgc caccctggcg agcctgccgg
     1921 agcgcgccac caccatgacc ccggtgctca acgccaccgg ggtcgtcgtg cacaccaacc
     1981 tgggtcgggc cccgctgtcg gctgcggccg tggacgccat tacggccgcc gcaggcagcg
     2041 tcgacgtcga gctggacctg atcacgggca agcggtcgcg ccgcggccgc ggggtgatcg
     2101 cggcactcct cgaggccgtc ccccaggccg aggctgcgct cgtcgtcaac aacggggctg
     2161 cggctctggt cctggccaca accgcactgg ctgccggtcg tgaggtcgtc gtcagccgcg
     2221 gcgagctggt ggagatcggc gacggattcc ggctccccga cctgattgtt agcaccggcg
     2281 cccgactgcg cgaggtgggt accaccaacc gcaccacctt ggccgactac gaggcggcga
     2341 tcggtccgga caccggctgc atcctcaagg tgcacccgag caactttcgc gtcgagggct
     2401 tcacctcatc agtcccggtc actgccctgg ccacgctggg gctccccgtg gtgcatgacc
     2461 tcggcagcgg cctgcttcat ccgcacccgc tgctccctca ggagcccgac gccgcagggt
     2521 ccctggtcga cggcgcagca gtggtcacct tcagcggcga caagctcctc ggcggcccgc
     2581 aagcgggcat cgtgctcgga aaccgagaca cggtcgagcg tctgcgtcga cacccgctcg
     2641 cccgagcggt tcgggcggac aagacgacgc tcgccgccct cgaagcgact gttcgcggac
     2701 cgcggcctcc cgtgtgggat gccctcgaag cagcccccga ggtcctccac gagcgctgcg
     2761 aggcgttggt cgcagccctc ccgtccgaac tgggtgctgt gacggttccg gctgacggag
     2821 tggtgggcgg cggtggcgcc cccggccaac cgttgccagg gtgggcggtc gccctccccg
     2881 agcggtatgc cgcgtcgctg cgccagctgc cacaccccgt cctcgctcgc gtggagcggg
     2941 gtcggtgcct ggttgacctc aggtgtatcg cgccgcgcga cgacgcagcc gtgggagccg
     3001 caatcatcct ggcgggcgag tcggcggcgc ccgaggcgcc atagttcagg ccgtgatggt
     3061 gccgtgctcg aacgtgcagg tgagccgacc gtcgccagtg gcggtggtgt cggtcagcgg
     3121 atagccgtag ccaccgcccg cgcccccggc attcttccag gccgtgagaa ccgagccgta
     3181 gaccagccgc gctggtccgg cgtgcagggc ccacagctcg cctccctgga actgttggtt
     3241 gcccccctgt gaccctcgag ccacggaggt gaccgggtac cccagcagtc cagacggtcc
     3301 cccgttcgcc acccacccgg catacatcac tccggccacg gctaccgtcg gcgtactgct
     3361 cgagccagcg atcgctccgt gttcgaacag ctgcagccac gcggttccgg ccgaacggcg
     3421 gatgtctgtg ggatagccga gcggaccacc ctcccgtccg ttctggaccc agacgtcggc
     3481 gatgggtgcg gccacggcca cggcctgggt accggtgctc gcggtgatga gccctccctg
     3541 gaactgctga tgccacccga ttccgtcagg attggccacc cgcgacaccg tcgggtagcc
     3601 caaggcgcct gcctcgcggg cgttggctac ccacactgcc cagctcggct ggtacacagg
     3661 tagcacgacc gcccccgtgg cgccggccag agctccgcct tggaacagct ggatccagcc
     3721 gctcgcacgg gcacctggac ctgaggcgtt ggtgggataa cccagggggc cgctcacccc
     3781 gccgatggct gaccacgcgc gcagggccag cgtcccgact ggctgggccc cggtgccgga
     3841 cgtccagtag atggccccgc cctgatacgt cacgtacacg ccaccgaggc ggtcgcccac
     3901 actgcggttc ggcccggtgg acgccttgag gaacgacgcc tggtcgccga gtgccatgta
     3961 ccgctgctcg atcgcccccc acgcgggcag gcacggagcg ctgtgctcgc tggtgcggtt
     4021 gtcgacgagg ctcgtggtgg tgcagttggc ccacttgtac ggcgccacac agctcacgac
     4081 ccggcagtgc acgccgccgc tgcacctcac ctgggtgttg cactggccgt agcggaaggc
     4141 gttgcagcac acccgccgct ggtcacaggt cgccgtcgac cccgagccgc acgagcagct
     4201 ccagcagctc gagctgcaga ggcccgaggt gccgcacccg gtggtgcacc gcgagcagga
     4261 tgcattgcag tccacgatgt agcggtagcc actgccgcac cacgaggagt ccgcagcctt
     4321 ccaccacccg gctgcgaagc tgcccggcgg acaggcgttg acgcccttgt tgatcgtgca
     4381 gcagaagacc gtccagccgg ccgacgcgac gttgcccggc ccgcagatcg tggcataggc
     4441 gcccactggg cgaagggcga actccttggg cttcgtcgcc agggcagcgg cggccaccgt
     4501 ggcccccacc agcaggttgc gccgggtgac cgggcggaac ctgcgcgaca gggcgccgac
     4561 gatcccggcc atcccccctg gcccggcggt gaggtcctcg agagtgctca cggtcggcct
     4621 ccctggcggg tcaacgtggc acggtcggtg atgtgcaccg tccgcacgag cgcagcagct
     4681 cgcggcaccg aggccatccg ccgagcgtgg ctgccgagca cgacgaacag gcagaacgct
     4741 cgaccgccgg agctgaagaa gtgttgcgcc gcgctcatgc caggcagcgg tcgctggagc
     4801 cggttgggag cgaactggga gggcgccagc ttgggcattc cctgtctctc gaacaggccc
     4861 tggtcggcga cctcggggcc gtagtcgacc accgcgacga agacgtcgtc gggcccgagc
     4921 aggtcgacgg cgccggtgcc gaagtcccca cggtcggccg gcatgggtcg ggtgcaggca
     4981 tgcaacaccg gccgggtgag gtcctcgaga ggtgtcgcag ccgaaagctt cctcaggccc
     5041 gcggccgggg gcagcgcacc tgggcgccgg gtcacggcga cgtgccaccc tcgcggggct
     5101 tgcgccgtca ggccgtaggt gtccgccatg cctcagctcc caactgcggc ggcaccaagg
     5161 acaacccccg caactccgag cgccagccta gccacgactc gccccgaaac cgcccatctc
     5221 tcgatcatgt cgaacgcgtc gtgcagtcgg cgtcggtcct gcacccgcgc catcagcagg
     5281 gacggaagag cacggacgag tccgaaggtt ccgccgatgg cgagcccggc acccacctgg
     5341 ccactgaggg cagcgagcag cacgacggca tacgtcgacg tgctggtaat gatcgtgacc
     5401 aggccaaacc ccagctgcac cccgaagccc aagccataga cccagccgcg gtatgccgtc
     5461 agccaccgct cgtccacttg gcggcgccac gacggcaccg actgcgcgcc ccgcaggtcc
     5521 aggacgagtc cggcgaagca caacagggcg aggacgccca acgaccagtg cgacgtgcgc
     5581 gccgcggtcg gcacgacctg gccgaccagt ccggcgagtc ctcccagcgc gaatccgccc
     5641 gccagcgaac ccacgaggta tgccgtggtg g
//
LOCUS       DASYFY010000254         4235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1280274, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000254 DASYFY010000000
VERSION     DASYFY010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4235
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1280274"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            594..2018
                     /locus_tag="VGN19_05110"
     CDS             594..2018
                     /locus_tag="VGN19_05110"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEV7195299.1"
                     /translation="MERQQVRAAIYARISQDRSGAQAGVTRQLEDTRKLAAELHWEVV
                     EEFVDNDVSAKQRRWSTSQRRFVNTTRPRYEALLDAIREHRVDAVLAWHPDRLYRRIR
                     DLEDLVDMLEQNNVDVVTVKAARVNLSTASDRLNARLPGSVAMYESEIKSERVAAAAA
                     RRALQGRFSGGMRPYGYEPDGVTIREEEARHLRAAYNGVLAGRSLAEVTRRLTAAGST
                     SSTGRSWTPQHLRIVLLSPRFAGLATHKGAIVGEAVWPAVVDRETWETVRATLTDPAR
                     RTTPGNAPRHLLSGVTFCARPDCGRACRVSTTGGRGRPRRLVYRCPHGHVTRSKELLE
                     RFVTEVTLAYLEREGVRPEPASEVIDAAPARDVEVLRQRLEAVAVDYAEGVVTKEQLH
                     AATRTLRARIAELDGALAASTRSRALSVVDGVPDLRVAWDGFDLDTRRAVVRALWRVE
                     LAPQSSGSPGVHPEGVLMTPAVDV"
     gene            2334..3719
                     /locus_tag="VGN19_05115"
     CDS             2334..3719
                     /locus_tag="VGN19_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEV7195300.1"
                     /translation="MPTNLEAALAGFHGRLIGQGNPDYDTARAVYNAMIDRSPALVAQ
                     VRDESDVAMAVTAARDQGVTVAVRGGGHNGAGFGTVDGGLVIDLRELNSVEVDPQNKR
                     VRVGGGATWGEVDGATGAHGLATPSGIISTTGVGGLTLGGGLGHLTRMYGLAIDNLLE
                     ADVVLADGSRVTANAQDNRDLFWALRGGGGNFGVVTSFTFKLNDVSTFTGGPTFWAVE
                     QGDQVLKAYREFIGKAPRHLSGFFAYIQVPPAPPFPEELHLRPVAAVVWACVGDLETA
                     QTAMAPLLDSLPEPLLHGVAAMPHTALQSAFDALYPKGQQWYWRADFVNTIPDEAVAI
                     HQRFGAELPTFQSTMHMYPIDGAAHDVAREDTAWAYRDAQWGSVFAGVSADPGDAGKI
                     RQWCIDYFEALHPFSAGGAYVNMMMDEGEERVRASYGANYDRLAQVKSEYDPGNLFHL
                     NQNIKPLATAR"
BASE COUNT          672 a         1404 c         1516 g          643 t
ORIGIN      
        1 ccagccaagc gtggagaagt ctcacgggct ctcaaatagg gggtactcaa gtcgacgttt
       61 agcccttgaa ggcagttctg ccacggcgtg gcggatgagc tcgaaccggt gcaccaggca
      121 acggatgacg acgacgtcgg acggcgccca cggccactcg cagcgccacc gcatgggcga
      181 gccatcgggc gagccacacc ggtcggtccc cgtcggctgg tgtcctatgg gccatcgtgc
      241 ggcgttcttg ccgccgaggt gggcgcgttg cgactagcga tagtcgaggc tccttggggg
      301 catcggctgc tgtggcgggc ctcctggcta cggctgggtg accctgcggt cgtccggtac
      361 gaggcctacc gtccgttgaa gccgcaccgc cgccgtccga aagtctctgc cgacggttgg
      421 aggccgcgcg ttgtccgcgc cgaccacctc gacgacctgg tccggcttgg cacgctgacg
      481 ccaggccgcc cggttcctcg aggtttgcgc cgaggccggc ccaacaggct ggtggccgga
      541 ggtacccagg ccgacaagac ggcctgtcgg ttgagacacc tacggttggc aggatggaga
      601 ggcagcaggt cagggcggcg atctacgcgc ggatctcgca ggaccggtcc ggtgcccagg
      661 ctggggtgac tcggcaactg gaggacaccc ggaagctggc cgcggagctc cactgggagg
      721 tggtcgagga gttcgtcgac aacgacgtct cggccaagca gcggcgctgg tcgacgtcgc
      781 agcgcaggtt cgtcaacacc acccgaccgc gctacgaggc gctgctcgac gcgatccgcg
      841 agcaccgagt ggacgcggtg ctggcgtggc acccggaccg gttgtaccgg cgtatccggg
      901 acctggagga cctagtggac atgctggagc agaacaacgt cgatgtcgtc acagtgaagg
      961 cggccagggt caacctgtcg accgcgtcgg accggctcaa cgcccggctg ccggggtcgg
     1021 tggcgatgta cgagtcagag atcaagtccg agcgggtcgc cgccgcggcg gcccgccggg
     1081 cactgcaggg caggttctcc ggcgggatgc gcccgtacgg gtacgagccg gacggcgtca
     1141 ccatccgcga ggaggaggcc cgccatctcc gtgccgccta caacggcgtc ctggccggtc
     1201 gctccctggc cgaggtgacc cgccggctga ccgcggccgg gtccacctcc agcaccgggc
     1261 ggtcgtggac cccgcagcac ctgcggatcg tgctgctgtc accccggttc gccggcctgg
     1321 ctacccataa gggggcgatc gtgggggagg cggtgtggcc cgcggtggtg gaccgggaga
     1381 cgtgggagac ggtccgcgcg actctgaccg acccggcgcg gcggaccacg ccggggaacg
     1441 cgccgcgtca cctgctgtcc ggggtcacgt tctgcgcccg accggactgt ggccgggcgt
     1501 gccgggtgtc gacaacgggt gggaggggtc ggccacggcg gctggtgtac cggtgccctc
     1561 acgggcacgt gaccaggtcc aaggagctgc tcgagcggtt cgtcaccgag gtgacgctgg
     1621 cctacctcga gcgcgaaggg gtccgcccgg aacccgcgtc cgaggtcatc gatgctgccc
     1681 cggcccggga cgttgaggtg ctgcggcagc ggctggaggc ggtggcggtg gactacgccg
     1741 agggtgtggt gaccaaggag cagttgcacg cggcgacccg cacgctgcgc gcccggatcg
     1801 ctgagctgga cggtgccctg gccgcctcca ccaggtcgag ggccctgtcg gtggtcgacg
     1861 gcgtccccga cctacgggtg gcttgggatg ggttcgacct ggacacccgc cgcgccgtgg
     1921 tccgggcgct ctggcgggtg gagctggcgc ctcagagttc gggcagtccc ggcgtacatc
     1981 cggaaggcgt cctgatgacg ccagcggtcg acgtctgaac gtgtctgcat ggcctgcgaa
     2041 gactcgacag cggtcgtgaa aaccgtcgcc gcgcgtcctg acatgcttga gcgctcgttc
     2101 gctgcgcagg ttgcccatgt ctgcccgggt ccagctcgtc gtcatcgcac cgcgccgagt
     2161 tgacccgacg aaagccgacg aaagggcctc gacgatggca acgccgggtg ccagtatcga
     2221 cagtcgagtc accggaatgg tccttctggg tcatgccccg cgcacttgac cggactacct
     2281 tgaaaggttg gaacgccagg gattctgcac cgtcgagacc ctaggagtgg agaatgccaa
     2341 ccaaccttga ggcagcactt gccggctttc atgggcggct gatcggccag ggcaacccgg
     2401 actacgacac cgcgcgtgct gtgtacaacg ccatgatcga caggtcgccg gcactggtcg
     2461 cgcaggtccg ggacgagtct gacgtcgcca tggccgtcac ggctgcccgc gaccagggcg
     2521 tgacggttgc ggtgcgtgga ggtggacaca acggcgccgg cttcggcacg gtcgacggtg
     2581 gcctggtcat cgacctgcgc gagctcaact cggtagaggt ggacccgcag aacaagcggg
     2641 tccgggtcgg cggcggtgcc acctggggag aagtggacgg ggcgacaggg gcccacgggc
     2701 tggcgacgcc cagcgggatc atctcgacca ccggggtggg cggcctcacc ctcggcggcg
     2761 gcctgggaca cctcacgcgc atgtatggcc tggcaatcga caacttgctc gaggccgacg
     2821 tggtgctggc cgacggcagt cgggtgacgg cgaacgccca ggacaaccgc gaccttttct
     2881 gggccctgcg tgggggcggt ggcaacttcg gggtggtcac gtcgttcacg ttcaagctca
     2941 acgacgtctc gacgttcacc ggcggcccga cgttctgggc ggtcgagcag ggcgaccagg
     3001 tcctcaaggc ctaccgcgag ttcatcggaa aggccccccg ccacctgagc ggcttcttcg
     3061 cctacatcca ggttcccccg gcaccgccgt tccctgagga gctgcacctg cgcccggtgg
     3121 ccgctgtcgt atgggcctgt gtcggagacc tggagactgc gcagacggcc atggcgccct
     3181 tgctcgacag cctgcccgag ccgctcctgc atggtgtcgc ggccatgccc cacacggcgc
     3241 tccagagtgc ctttgacgcg ctctacccca aggggcagca atggtactgg cgcgctgact
     3301 tcgtgaacac catccctgac gaggcggtgg cgatccacca acgcttcggt gccgagctgc
     3361 cgaccttcca gtcgacgatg cacatgtacc ccatcgacgg ggccgcgcac gacgtggccc
     3421 gggaggacac ggcgtgggcc taccgcgacg cgcagtgggg gtcggtcttc gccggtgtct
     3481 ccgccgaccc aggcgacgcc ggcaagatcc ggcagtggtg catcgactac ttcgaagcgc
     3541 tccacccctt ctccgctggc ggtgcctacg tgaacatgat gatggacgag ggcgaggagc
     3601 gggtgcgcgc gagctatggc gccaactacg acaggctggc acaggtgaag tccgagtacg
     3661 acccgggcaa cctcttccac ctgaaccaga acatcaagcc gttggcaacg gcgcgatgag
     3721 gcgaagtcga gaccgattcc tgggcgcgat gcttagcggg ctgttgctgg tctgagaatg
     3781 ctgtttgatg ctttgacact gcgtgccgcc ccaaccgatc acgctcacac ctcgccgcgc
     3841 tctcctgcga cggctgactt gagcgtcagc gcctagctcc ggtggctggc ccctcgcggc
     3901 cgaagacccg cactcgagag cgtcgcgtca acgtcccaca ggggccaggt agagccaccc
     3961 cgactcgccg cggaacggct caaagccgaa cggtgcgcag aaggcgatgg cgggattgcc
     4021 ctcggcgtgg gcaaccagca gcgcagcgtc gatggcggga gcaacgttcc ggcaaacctc
     4081 aacgcgtgca ccattagcca ggtgcccagg cctcggtgct gccagcggat gtcgacaccg
     4141 agccgtgaca ccaggatcgc cggcagggct gtgcgcccgg acctgaaacc ccggacgggc
     4201 cggccagcct ccacctggaa ggtgctgagg cggta
//
LOCUS       DASYFY010000255         3436 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_544595, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000255 DASYFY010000000
VERSION     DASYFY010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3436
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544595"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1589)
                     /locus_tag="VGN19_05120"
     CDS             complement(<1..1589)
                     /locus_tag="VGN19_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195301.1"
                     /translation="MSPNGFTSSDGHPAHGDRFRYGPWHGGADPLAAPFDVRAALDQI
                     GRDVLAGGSAAEALRDLLHRGLDGTRGLDALTQRLRRAREAARRRGDLSGTLDQVRAA
                     LDQALAAERDTLSGEDSDAARLAEMDLATLPDDVAGQVRALASHEWHSADAKAIYDQI
                     AQLLQREVLDAQFAGLKQALSGQNPEVLAAVRDMLGDLNQLLASHARGEDTTDQFREF
                     MAKHGDLFPEQPGTVDELIDLLARRQAAAARMMASLSPQQREQLGQLMSEALADADLA
                     SQMAQLSDNLRALRPGLDRASPVGMGQGGEPLGYSAAVAAVAELADLEELGQQLGQSY
                     PGSTLDDVDVDRLEEHLGADAARDFEALRRLERELESQGYLSHGDDGLRLTPRAVRRL
                     GETALKRVFDGLSADGSGDHVDHRTGHADEPTGLTRGWEFGDEQPIDVVRTVSNALRR
                     NGIRPGTVGLDVSDFEVVETERRTTAAVALCVDMSFSMVNEGRWGPMKQTALALTHLV
                     QTRFRQDALQIIGFDLAARRLT"
     gene            complement(1592..2983)
                     /locus_tag="VGN19_05125"
     CDS             complement(1592..2983)
                     /locus_tag="VGN19_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017888312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195302.1"
                     /translation="MTPNDFPSTLGDLAASAYRHRSVKAELRENLLTRLRAGDEAFPG
                     IVGFDDTVLPELEAALLAGHDFVLLGERGQGKTRVMRTLGQLLDEWSPAVAGCEINDD
                     PLQPVCSRCLRLKAELGDDLPVRWRHRTDRYAEKLATPDTSVGDLVGDVDPVKVAQGR
                     TLGDPETVHYGLVPRANRGVLGLNELPDLAERIQVALFNVLEERDIQIRGYSLRLPLD
                     LLVVATANPEDYTNRGRIITPLKDRFGAEIRTHYQEDVSDEVRLISQEARLVAEVPEH
                     LVEVVARFTRGLRESSAVDQRSGVSARFAIAGTESVAASALRRAAREGESRAVARICD
                     VPPVVPTLLGKVEFEMGEEGREREVLDHLLRVATAETFRARLAGLDLSGFTDLFAEGA
                     VVETGELVPATDLLAQVGPTPGLSKVLDRLGHGDDAEPGVVAAAIEFVLEGLHLTRRL
                     DKDTVAGRTVYGA"
     gene            complement(3125..>3436)
                     /locus_tag="VGN19_05130"
     CDS             complement(3125..>3436)
                     /locus_tag="VGN19_05130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195303.1"
                     /translation="LTWLAVRRYGTAAAVELVSEGIQTTARYAGVPQKYNATVSRAWV
                     ELVGYHAGEQDRDDFAAFADHHTALLDKRLLTRFYRPTTLASTPARTGWVEPDLAAFP
                     W"
BASE COUNT          495 a         1190 c         1219 g          532 t
ORIGIN      
        1 gtcaggcgtc gagcggcgag gtcgaagccg atgatctgca gggcgtcctg ccggaaccgc
       61 gtctggacga ggtgggtcag tgccagcgcg gtctgcttca tgggtcccca ccgaccctcg
      121 ttgaccatcg agaacgacat gtcgacgcag agcgccaccg ctgccgtggt tcgtcgctcg
      181 gtctcgacga cctcgaagtc gctcacatcg aggccgacag tgcctggtcg gatgccgttg
      241 cgccgcaacg cgttcgacac ggtacggacc acgtctatgg gttgctcgtc accgaactcc
      301 caaccgcgag tcaggccagt gggctcgtcg gcatgaccgg tgcggtggtc gacatggtca
      361 cccgacccat cagcggagag gccgtcgaaa acccgcttga gtgcggtctc tcccaggcgt
      421 cgtaccgcgc gcggggtgag ccgaagcccg tcgtcgccgt gactgaggta cccctgactc
      481 tccagctcgc gctccagtcg tcggagcgcc tcgaagtcgc gagcggcgtc cgcccccagg
      541 tgctcctcga gtcggtccac gtcgacgtcg tcgagggtcg accccgggta ggactgaccg
      601 agctgctgcc ccagctcctc gaggtcggcc agctccgcga cagccgccac cgcagcgctg
      661 tagccgagcg gctccccgcc ctggcccatg cccacggggc tggcgcggtc aagtccaggg
      721 cgcagcgccc tgaggttgtc cgacagctgt gccatctgcg aggcgaggtc ggcatcagcc
      781 aacgcctcgc tcatcagctg gccgagctgt tcgcgctgct gggggctgag ggacgccatc
      841 atccgcgccg ctgcagcctg tcgccgagcc agcaggtcga tgagctcgtc aaccgtgcca
      901 ggctgctcgg gaaacaggtc accatgctta gccatgaact cgcggaactg gtcggtggtg
      961 tcctcacctc tggcgtgaga ggcgaggagc tggttgaggt cgccgagcat gtcacgcacc
     1021 gctgccagca cctccgggtt ctgacccgag agtgcctgtt tcagaccggc gaactgggcg
     1081 tccaggacct ctcgctgcag cagctgggcg atctggtcat agatggcttt cgcgtccgcc
     1141 gagtgccatt cgtgggaagc cagcgcccgg acctgaccgg ccacatcgtc gggcagggtg
     1201 gccaggtcca tctccgcaag gcgcgccgca tcgctgtcct cgcccgacaa ggtgtcacgc
     1261 tcggcggcga gcgcctggtc cagggcggcg cgtacctggt cgagggtccc ggagaggtcg
     1321 ccgcgtcggc gcgcggcctc gcgcgcgcgg cgcagtcgct gggtcagggc gtccaggcca
     1381 cgggtgccgt cgaggcccct gtgcaggagg tccctgagtg cctcggcggc cgagcccccg
     1441 gccagcacgt cacggccgat ctggtccagg gcggctcgga cgtcgaaggg agcagcgaga
     1501 gggtcggccc caccgtgcca gggtccgtac cgaaaccggt ccccgtgggc ggggtggccg
     1561 tcagagctcg tgaagccgtt gggggacatg gctaggcccc gtagaccgtt cgtccggcga
     1621 ccgtgtcctt gtcgaggcgc cgggtgagat gcaggccctc caggacgaac tcgatggcgg
     1681 ccgccaccac ccccggctcg gcgtcgtcgc cgtgaccgag ccgatcgagc accttggaca
     1741 gtccgggcgt ggggccgacc tgggcgagga ggtccgtcgc gggcacgagc tcaccagtct
     1801 cgaccacggc accctcggcg aacaggtcgg tgaagccgga caggtcgagc ccagccaggc
     1861 gggcccggaa ggtctcggcg gtggctaccc gcagcaggtg gtccaggacc tcccgttcac
     1921 ggccctcctc acccatctcg aactcgacct tgccgagcag agtgggcacc accgggggta
     1981 cgtcacagat gcgggcgacg gctcgggact cgccctcgcg ggcggcccgt cgcagcgcgg
     2041 acgccgccac gctctcggtg ccggcgatgg cgaagcgcgc agagacccct gagcgttggt
     2101 cgacggcgga cgactcgcgc aggccgcggg tgaatcgggc gaccacttcg acgaggtgct
     2161 cggggacctc ggccacgagc cgcgcctcct gcgagatcag ccgcacctcg tcgctgacgt
     2221 cctcctggta gtgcgtgcgg atctcggcgc cgaaccgatc cttcaggggg gtgatgatgc
     2281 gcccgcggtt ggtgtagtcc tccgggttcg cggtcgccac gacgagcagg tccagcggaa
     2341 gacggagcga gtagccgcgg atctggatgt cgcgttcctc cagcacgttg aacagcgcca
     2401 cctggattcg ctcggccagg tcggggagct cgttcagccc caacaccccg cggttcgcgc
     2461 gggggaccag cccgtagtgc accgtctccg gatcgcccag cgtgcgcccc tgcgcgacct
     2521 tgaccgggtc gacgtcgccg accaggtcgc ccacgctggt gtctggggtc gcgagcttct
     2581 cggcataccg gtcggtgcgg tgccgccaac ggacgggcag gtcgtcgccg agctcggcct
     2641 tcagtcgcag gcagcgcgag cagaccggct gcagcgggtc gtcattgatc tcgcagccgg
     2701 cgacggctgg tgaccactcg tccagcaact gccccaaggt gcgcatcacg cgggtcttgc
     2761 cctgcccgcg ctcgccgagc aacacgaagt cgtggccggc caacagggcc gcctcgagct
     2821 cgggaagcac cgtgtcgtcg aagccgacga tccccggaaa cgcctcgtct ccggcgcgga
     2881 gccgggtcag caggttctcg cggagctcgg ccttgacgga gcggtgacgg taagcgctgg
     2941 cggcgaggtc gcccagggtg ctcgggaagt cgttcggcgt catctgccga atctacgtcc
     3001 ggtctgccct agacggcagc cggtgagtca caggctggga cgcgttgtga cgccgaccat
     3061 cccactcgac agtggctgcc agcgaggatc ccggcccttc cctgactggg ccgcccgccg
     3121 ccggttacca ggggaaggct gcgaggtccg gctcgaccca tcccgtccgt gcgggtgtgc
     3181 tggccagggt ggtgggccgg tagaagcgcg tgagcaggcg cttgtcgagc agtgccgtgt
     3241 gatggtcggc gaaggctgcg aagtcgtccc ggtcctgctc gcctgcgtgg tatcccacca
     3301 gttcgaccca ggcccggctg acggtcgcgt tgtacttctg gggcactccc gcgtagcggg
     3361 cggtggtctg gattccctcg ctgaccagct cgaccgcggc agcagtgccg tatcgccgca
     3421 ccgccagcca ggtcag
//
LOCUS       DASYFY010000256         4478 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_438962, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000256 DASYFY010000000
VERSION     DASYFY010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438962"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VGN19_05135"
     CDS             <1..414
                     /locus_tag="VGN19_05135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEV7195304.1"
                     /translation="RDPAVFPDLVLPVVVAGALLAGPSGGALLGLGAGWLVDLMPPGA
                     PALGTNALLYAAAGLLAGAGRREGPAPWGWLAVIGVAASAVEMAGRVVVALLSGVTVV
                     WPTIGLRLLLTSLLCAIAVPGLVRLEQWLVRRRAW"
     gene            411..2420
                     /gene="mrdA"
                     /locus_tag="VGN19_05140"
     CDS             411..2420
                     /gene="mrdA"
                     /locus_tag="VGN19_05140"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEV7195305.1"
                     /translation="MTGRRDGQRAGFARLWVLGLVVLALTGTLVGRLGQVQIRDHAAY
                     QRAAATLNTRITAQPALRGRILDRHGIPLVDNTAETVVTVDRKVLADAKDGGRAVVSR
                     IAMVLGVPFDLLWGRTYLCGTAGAPRAPACWGGSAYVPVPLLVGADARRALSLLERPD
                     LYPGVDVLAAPVRQYPQKRTVNAAQVLGYLAPATVQDLAAAPGLVGDLDLVGRSGLEK
                     QYEQQLRGVPGRTTVAVDPRGVATRVLSQVAPVPGRDLVTTLDVRVQAAAESALRRAV
                     AAARSRGHRADGAAAVVLDTATGGVLASASYPTYDPDVWTGGIGAKALASLVAPTAGQ
                     PLVNRVTSAVYPPASTFKVVSLPAAIRAGNSLSGTYDCASSYRIGNRTFANYESRAYG
                     PISLTKAIEVSCDTIFYDFAYRSWLAQGGLAAPSDTNDPFVAMAHAFGLGADTGIDLP
                     GERSGRVPDRAWKRETWAATRTDTCRRANTGYPDVARTDPARAAYLKALAVENCRSGF
                     EFRAGDAANFAIGQGDIGVTPLQLTRAYAAIANGGVLVTPHVALGFQSPGGSMEPVAP
                     GRTASVDLPSGALPFLHQALQDVVTRGTAAGAFAGFPLAQWPVAGKTGTAEAFGSQDS
                     AWFVSYAPATKPRYAVAVVISQAGTGGEAAAPAGRQIYDVLRTLR"
     gene            2507..3901
                     /gene="lpdA"
                     /locus_tag="VGN19_05145"
     CDS             2507..3901
                     /gene="lpdA"
                     /locus_tag="VGN19_05145"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEV7195306.1"
                     /translation="MADFDLVVLGAGPGGYVAAIRASQLGLRAAVVESKYWGGVCLNV
                     GCIPSKALLRNAELAHILTHEKDKFGIEGDATMSFKPTHARSRAVSAGIVKGVHFLMK
                     KNKITEIDGWGTLTSPTSMDVALNSGEKRAITFDKLIIATGATTRLIPGTSLSDRVVT
                     YEEQILTDQLPESIVIAGSGAIGVEFAYVLKNFGVDVTIVEFLDRMVPTEDAEVSKEL
                     LKHYKKLGITVLLSTKVESIDDSGEKVTVTVSPAAGGESRVIETDKVLQAIGFAPRLE
                     GYGLEALGVATERGAIVIDEHCRTNVDGVYAIGDVTGKLMLAHTAEAQGVVAAETMAG
                     AETMPVEYDFIPRATYCQPQIASFGYTEEQAKDKGYDVKVAKFPFSANGKAMGLGDAV
                     GFVKVVADAAHNEIIGAHLIGPDVTELLPALTLAQKWDLTADEVARNVFAHPTLSEAV
                     KEAVEGIAGHMINL"
     gene            3915..4472
                     /locus_tag="VGN19_05150"
     CDS             3915..4472
                     /locus_tag="VGN19_05150"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEV7195307.1"
                     /translation="MPRLRLPIETERLVLRSFRPGDEDDVLAYRSVSEVVRYIPGEPK
                     TRDQVADLVAERATAGRVDEKSPILTLAVELAGRVIGDVLLHLDGLDGHDGKQAEVGW
                     VFAPDVAGHGYATEAARAITQAAFEEIGVHRVWAQLEPENTGSSRICERLGMRREALF
                     RQGSWFKERWTDLAVYAILADEWRD"
BASE COUNT          647 a         1504 c         1612 g          715 t
ORIGIN      
        1 cgggatccag ccgtgtttcc cgacctcgtg ctgccggtcg tcgtggctgg agcgctcctc
       61 gccgggccgt cgggcggtgc cctgctcggc ctcggcgccg gctggctggt ggacctcatg
      121 cctccggggg cgccggccct gggcaccaac gccctgctgt atgccgcggc cggactgctc
      181 gcgggagcag gccgccgaga ggggcccgcg ccctgggggt ggctggcggt gatcggcgtg
      241 gctgccagcg ccgtcgagat ggccgggcgc gtcgtggtcg ccctgctgtc cggagtcacc
      301 gttgtctggc cgacgatcgg tctgcgcctg ctgctgacgt cgctgctctg tgcgatcgcc
      361 gtcccaggac tggttcggct ggaacagtgg ctggtgcggc ggagggcctg gtgaccggtc
      421 gtcgcgacgg ccagcgggct ggcttcgcgc gcctgtgggt gctgggcctg gttgtcctcg
      481 ccctcaccgg cacccttgtg gggcggctcg ggcaggtaca gattcgcgac cacgcggcat
      541 accagcgcgc tgcggcgacc ctgaacaccc gcatcaccgc tcagccggcg ctgcgtggcc
      601 gcatcctgga ccgtcacgga atcccgctgg tggacaacac cgctgagacc gtggtgacag
      661 tggaccggaa ggtgctggcc gacgccaagg atggcgggcg cgctgtggtc agtcggatcg
      721 cgatggtgct gggcgtcccg ttcgacctgc tgtggggccg gacctatctg tgcggcactg
      781 cgggcgcgcc gcgggcaccg gcctgctggg gtggctcggc ctatgttccg gtgcccttgc
      841 tcgtcggggc ggacgcgcga cgggcgctca gcctgctcga gcgacccgac ctgtatcccg
      901 gggtcgacgt gctggcggca ccggttcgtc agtaccccca gaagcggacg gtcaacgcgg
      961 cacaggtcct gggctacctg gcgccggcaa cggtccagga cctcgccgcc gccccgggcc
     1021 tggtgggtga cctcgacctc gtgggtcggt cgggcctcga gaagcagtac gaacagcaac
     1081 tgcgcggtgt ccccgggcgg accaccgtcg ccgtcgaccc tcgtggggtg gccacccggg
     1141 tgctgtcgca ggtcgcgccg gtgcccggtc gtgacctggt caccacgctg gacgtgcggg
     1201 ttcaggctgc cgccgagtcg gcgctgcgac gagccgtggc tgcggcccgc agtcgtgggc
     1261 accgggccga cggagcggcc gcggtcgtcc tcgacaccgc gaccggcggg gtcctcgcct
     1321 cagccagcta ccccacctat gaccccgacg tctggaccgg gggcatcggt gccaaggccc
     1381 ttgcttcgct cgtcgccccg accgccggtc agcccctggt caaccgcgtc acctccgcgg
     1441 tctatccgcc cgcctcgacg ttcaaggtcg tcagcctgcc agcggcgatc cgggcgggta
     1501 actccttgtc ggggacctac gactgcgcca gcagctatcg gatcggcaac cgcaccttcg
     1561 ccaactacga gtcgcgggcc tatgggccga tctccttgac caaggccatc gaggtctcct
     1621 gcgacacgat cttctacgac ttcgcctacc ggtcctggtt ggcacagggc ggtctggcgg
     1681 caccctccga tacgaacgac ccgttcgtgg ccatggcgca cgccttcgga ctcggcgccg
     1741 acaccgggat cgacctcccc ggcgagcgca gcggccgcgt ccccgaccgc gcctggaagc
     1801 gcgagacctg ggctgccacc cgcactgaca cctgccgccg ggcgaacacc ggctatccgg
     1861 acgttgcgcg cacggaccca gcacgcgcgg catacctcaa ggccttggcg gtggagaact
     1921 gtcgcagcgg cttcgagttc cgggccgggg acgcggcgaa cttcgccatc gggcaaggcg
     1981 acatcggcgt gacgcccctg cagctgaccc gggcctacgc ggccatcgcg aacggtgggg
     2041 tgttggtgac cccgcacgtg gcactcggct tccagtcgcc aggcgggtcg atggagcccg
     2101 tggccccggg ccgaacggcc tccgtggacc ttccgtcggg agcgctgccc ttcctgcacc
     2161 aggcactgca agacgtggtg actcgcggaa cggcggccgg cgcgttcgca ggctttccgc
     2221 tggctcagtg gcccgtggcc ggcaagacgg gcaccgccga ggccttcggg tcgcaggact
     2281 ccgcatggtt cgtgtcctat gcgccggcga ccaagcccag gtatgccgtg gccgtcgtga
     2341 tctcgcaggc cggaaccggg ggagaggcgg ccgccccggc tggccgacag atctacgacg
     2401 tcctgcgcac cctgcgctga gtgggtggcc tgaggtcggg tgcactgagg tcgggtgcac
     2461 tgaggtcggg tggggtggcc gctcgccagt cagtaggctg ccccacatgg ctgacttcga
     2521 tcttgtcgtc ctcggtgctg gtcccggcgg atacgtcgcg gcgatcaggg cctcacagct
     2581 cgggctgcgg gccgcggtgg tggagtccaa gtactggggc ggggtctgcc tcaacgtcgg
     2641 ctgcatcccc tcgaaagcgt tgttgcgcaa cgccgagctg gctcacattc tcacgcacga
     2701 gaaggacaag ttcgggatcg agggcgacgc cacgatgtcc ttcaagccca cgcacgctcg
     2761 ctctcgcgcg gtgtcggcgg gcatcgtcaa gggcgtgcac ttcctcatga agaagaacaa
     2821 gatcaccgag atcgacgggt ggggcaccct gaccagcccg acgtcgatgg acgtcgcgct
     2881 caactcgggc gagaagcggg ccatcacctt cgacaagctc atcatcgcca cgggcgcgac
     2941 caccaggctg atccccggca cctcgctgtc ggaccgggtg gtgacctacg aggagcagat
     3001 cctcaccgac cagctgcccg agtcgatcgt catcgccggg tcgggagcga tcggggtcga
     3061 gttcgcctat gtcctgaaga acttcggcgt ggacgtgacc atcgtcgagt tcctggaccg
     3121 tatggtgccg accgaggacg cggaggtgtc caaggagctc ctcaagcact acaagaagct
     3181 cggcatcacc gtgttgctct cgacgaaggt cgagtcgatc gacgacagcg gtgagaaggt
     3241 caccgtgacg gtgtcgccgg ccgcaggcgg ggagtcccgc gtcatcgaga cggacaaggt
     3301 ccttcaggcc atcggcttcg ccccccggct ggagggctat ggcctcgagg cgctcggggt
     3361 cgcgacagag cgcggcgcca tcgtcatcga cgagcactgc cggacgaacg tggacggcgt
     3421 ctatgcgatc ggggacgtca cgggcaagct catgctggcg cataccgcgg aggcccaggg
     3481 cgtggtggcg gccgagacga tggcgggcgc agagaccatg ccggtcgagt acgacttcat
     3541 cccccgcgcg acgtactgtc agccgcagat cgcctccttc gggtacaccg aggagcaggc
     3601 gaaggacaag ggctacgacg tcaaggtcgc gaagttcccg ttctcggcca acggcaaggc
     3661 gatggggttg ggggacgcgg tgggattcgt gaaggtggtc gcggacgccg cccacaacga
     3721 gatcatcggg gcccacctga tcggtcccga cgtcaccgag ctgctgcccg cgctgacgct
     3781 cgcccagaag tgggacctga ccgctgacga ggtggcgcgc aacgtgtttg cgcacccgac
     3841 cctgtccgag gcggtcaagg aggccgtcga gggcatcgcc ggtcacatga tcaacctctg
     3901 actatcactc acgtatgccg cggctccgac tgccgatcga gaccgaacga ctggtgctgc
     3961 ggagctttcg gcccggggat gaggacgatg tcctcgccta tcgctccgtg tcggaggtcg
     4021 tccggtacat ccccggtgag ccgaagacgc gggaccaggt cgctgatctg gtggccgagc
     4081 gtgcgacggc gggtcgggtc gacgagaagt cgccgatcct gacgctggcc gtcgagctgg
     4141 ccggccgggt gatcggggac gtcctgctgc atctcgacgg cctcgatggt cacgacggca
     4201 agcaggccga ggtcgggtgg gtcttcgcgc cggatgtagc ggggcacgga tacgcgaccg
     4261 aggctgccag agccatcacc caggcggctt tcgaggagat cggcgtgcat cgcgtgtggg
     4321 cccagctcga gcccgagaac accggttcgt ctcgcatctg cgaacggctg ggcatgcgtc
     4381 gtgaggcctt gttccggcag gggtcgtggt tcaaggaacg gtggaccgac ctggcggtct
     4441 acgcgatctt ggcggacgaa tggcgcgatt agggctgg
//
LOCUS       DASYFY010000257         4061 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_702051, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000257 DASYFY010000000
VERSION     DASYFY010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_702051"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VGN19_05155"
     CDS             complement(<1..665)
                     /locus_tag="VGN19_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching enzyme"
                     /protein_id="HEV7195308.1"
                     /translation="MEIWPGKAYPLGATYDGTGVNFALFSEVAEKVELCLIDDDGAET
                     RVALPEVDGFVWHGHLPGIQPGQRYGYRVHGPYDPAHGHRCNPAKLLIDPYAKAIDGM
                     ADGDQSLFSYDFDAPSDDPDKANVEDSLGHTMLSVVINPFFDWDQDRSPRREYHETVI
                     YEAHVKGLTALHPEIPEEIRGTYAGIAHPATIAHLTELGVTAIELMPVHQFVNDFTLR
                     DKGL"
     gene            876..1631
                     /gene="fabG"
                     /locus_tag="VGN19_05160"
     CDS             876..1631
                     /gene="fabG"
                     /locus_tag="VGN19_05160"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEV7195309.1"
                     /translation="MTTERVAIVTGAARGIGAATAQRLAADGNAVAVLDLDEAACAQT
                     VAAITGSGGRALAVGVDVANADQVEAAVKRVADELGAPTILVNNAGITRDNLIFKMTE
                     GDWDAVINVHLRGSFLMTRAVQAYMTAEKFGRIVNLSSTSAQGNRGQVNYSAAKAGLQ
                     GFTKTLAVELGKFNVTANAVAPGFIQTEMTKMTAERLGVSFEDFITHSAAAIPVQRVG
                     QPEDIAATISFLCSDEAGFVSGQVIYVAGGPQD"
     gene            complement(1600..3015)
                     /locus_tag="VGN19_05165"
     CDS             complement(1600..3015)
                     /locus_tag="VGN19_05165"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7195310.1"
                     /translation="MWGMAEVQPVGTLEREVASDEAERRGALQRDLWARTAEVAGRLN
                     RAHGELVEIAVQLLEGGHWGDGGFRSAEHYFVVRAGLSPAHARDVVAVARRRSELPEA
                     RTALRRGRLSLDQVAVVAHHVPQSHQRSMTDLARHATVPQLRRVVSRHAFAVAPGADG
                     AGPSAESSLAERRACARPELSMRYDRDGRFQLRYSAPATVGALVEQAVKEAKDALFLG
                     RTQSAEVASEAALPSYADAIEELANRSLASVSSTSRAAHYRVYMHLSTDGAWVGGGHA
                     IPMPLVQRFLSEGVLQPVWETEGRPVNVGRDLRILPLRSRRLIEDRDRGCRFPGCTTT
                     RFVEIHHLLDWANGGATDDVNLVSLCPFHHDAVSRGDFTMTGDPTRPDGLVVVNRYGL
                     RIGPPPWRDLTAPAGGDPPIPAGSPVYEPPTGERAQWCDLEVLADAELPARLWRAGAL
                     TGRSGLSGLSGLSPGDRPPRR"
     gene            3132..3464
                     /locus_tag="VGN19_05170"
     CDS             3132..3464
                     /locus_tag="VGN19_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7195311.1"
                     /translation="MDNDPLNTTFAALADPTRRAILERLAHGDATVGELAEPFAMTLP
                     AISKHLSVLERAGLIVKSRDGQRRHCRITTTPLKNATAWLDDYRRHWEANLDSLDTYL
                     SKIQNQEK"
     gene            3467..3967
                     /locus_tag="VGN19_05175"
     CDS             3467..3967
                     /locus_tag="VGN19_05175"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7195312.1"
                     /translation="MSNTAFNTHQRATVTPDGSQLVITRTFAAPASLVYEAMTNPEHI
                     RQWWGAGHGEVTVCEVDLRVGGRWHFAQVTPRGEEVSFSGEYRELDPPGRIVHTEVYD
                     NIQSPAALVESTYTEEGGFTTLRAVITYDSPQSVEMVLASGMESGLNDSYDALERLVM
                     SLDRRR"
BASE COUNT          683 a         1423 c         1325 g          630 t
ORIGIN      
        1 aggcccttgt cgcgcagggt gaagtcgttg acgaactggt gcaccggcat gagctcgatc
       61 gcggtcaccc cgagctcggt caggtgggcg atggtcgcgg ggtgcgcgat accggcatag
      121 gtcccacgga tctcttccgg aatctccggg tgcagcgcgg tgagcccctt cacgtgggcc
      181 tcgtagatga ccgtctcgtg gtactcccgg cgcggtgagc ggtcctggtc ccagtcgaag
      241 aacgggttga tgaccaccga gagcatcgtg tgcccgaggc tgtcctcgac attggccttg
      301 tccgggtcgt cactgggagc gtcgaagtcg taggagaaga gcgactggtc gccgtccgcc
      361 atgccgtcga tggccttggc gtacgggtcg atcaggagct tggccgggtt gcagcggtgc
      421 ccgtgggccg ggtcgtacgg cccgtggacc cggtagccgt agcgctgccc gggctggatt
      481 ccggggaggt ggccgtgcca gacgaaaccg tcaacctcgg ggagcgcgac gcgcgtctcg
      541 gcgccgtcgt cgtcgatcag acacagctca accttctcgg ctacctccga gaacagggcg
      601 aagttgaccc ccgtgccgtc gtaggtggcg cccagggggt atgccttgcc gggccagatc
      661 tccatatggt gcctttgttc tcgatgccgt cagggtgctt tcggcggtgc tgcgagggcg
      721 acgctgacct ctggacctgc ccattgtgcc ggagttcacg agaaccgctg acctggtgcc
      781 accccaacac taagcaagcg cttagtagac tcgcccgcag gccgcatcaa actcccccct
      841 caacccgacc accaacccga ccccctggag gattcatgac caccgagcgt gtagccatcg
      901 tgaccggagc cgcccgtggc atcggcgcgg ccacagcaca gcgcctggcc gccgacggaa
      961 acgccgtggc cgtcctggac ctcgacgagg cggcatgtgc gcaaaccgtc gccgcgatca
     1021 cgggctcggg tggccgcgcc ttggcggttg gggtggacgt ggccaacgcc gaccaggtgg
     1081 aagcagcggt caagcgggtc gccgacgagc tgggtgcgcc caccatcctg gtgaacaacg
     1141 cgggcatcac gcgcgacaac ctgatcttca agatgaccga aggcgactgg gacgccgtca
     1201 tcaacgtgca cctgcgtggg tccttcctga tgacccgcgc ggtccaggcc tacatgactg
     1261 cggagaagtt cggccgcatc gtcaacctgt cctcgacctc cgcgcagggc aaccggggcc
     1321 aggtcaacta ctccgcagcg aaagccggcc tgcagggctt caccaagacg ctggccgtcg
     1381 agctcggcaa gttcaacgtc accgcgaatg cagtcgcccc aggcttcatt cagaccgaga
     1441 tgaccaagat gaccgccgaa cgcctcgggg tctcgttcga ggacttcatc acccattcgg
     1501 ccgcggcgat cccggtgcag cgcgtgggcc agcctgaaga catcgccgcc acgatctcgt
     1561 tcctgtgctc cgacgaggcc gggttcgtgt ccggtcaggt catctacgtg gcgggcggtc
     1621 cccaggactg agcccgctga gcccgctgag cccgctgcgc ccggtgagcg ctcctgcccg
     1681 ccagagccgg gcgggcagct cggcgtcggc caggacctcg aggtcgcacc actgggctcg
     1741 ttctcccgtc ggcggttcgt ataccggcga cccggcgggg atcggcgggt cgccgcccgc
     1801 aggcgccgtg aggtcgcgcc atggcggggg accgatcctc aggccgtagc ggttgacgac
     1861 gaccagaccg tccggccggg tcgggtcgcc ggtcatcgtg aagtcgccgc gactcacggc
     1921 gtcatggtgg aacgggcaga ggctgaccag gttgacgtcg tcagtcgcgc cgccattggc
     1981 ccagtcgagc aggtgatgga tctccacgaa ccgcgtcgtg gtgcaacccg ggaaccggca
     2041 ccctcggtcg cgatcctcga tcagccgtcg ggagcgaagc ggcagaatcc gcaggtcacg
     2101 gcccacgttg accggccgcc cttcggtctc ccacaccggc tggagaaccc cctcggaaag
     2161 gaaccgttgg acgagcggca tagggatggc gtgtccacca ccgacccacg cgccatcggt
     2221 cgagagatgc atgtagaccc ggtagtgcgc ggcacgactg gtggagctca cgctggccaa
     2281 ggagcggttc gcgagctcct cgatcgcgtc ggcatagctc gggagtgctg cctcggaggc
     2341 cacctccgct gactgggtcc gacccaggaa cagggcgtcc ttggcctcct tgacggcctg
     2401 ctcgaccagc gcgcccacgg tggccggcgc gctgtagcgc agctggaacc gtccgtcccg
     2461 gtcgtaacgc atcgacagct ccggacgggc gcaggcccgg cgctcagcca gcgatgactc
     2521 ggcgctcggc cccgccccat ccgctccggg ggcaacggcg aaggcgtgtc ggctcaccac
     2581 gcgtcgaagc tgtggcacgg tggcgtggcg ggcgagatcg gtcatggacc gttggtggct
     2641 ctgcggcaca tggtgcgcaa cgacggccac ttggtcgagg gacagccggc cccgccgtag
     2701 cgccgttcgc gcctccggca gctcggaccg tcgacgcgcc accgccacga cgtcgcgggc
     2761 atgagccggg gacagcccgg cgcgcaccac gaagtagtgc tcggccgacc ggaaccctcc
     2821 gtcgccccaa tgaccaccct caagaagctg gaccgcgatc tcgacgagct caccgtgcgc
     2881 acggttcagg cggccggcca cctcggccgt gcgtgcccat aggtctcgct gcagcgcgcc
     2941 tcgccgctca gcctcatcgg acgcgacctc gcgttccagc gtgcccacgg gctgaacctc
     3001 tgccatcccc cacatggttc aatcgtacag atgttcgaat ccgtggatcg gcctcatcca
     3061 cagggcttga cacctttcga agtcagctgg atagtttcca tatcggttaa tcaaccaatc
     3121 ggttaaggac aatggacaac gacccgctca acaccacgtt cgccgctttg gcagacccca
     3181 ctcggcgagc cattctcgaa cggctggccc acggggacgc caccgtcggc gagcttgcgg
     3241 aaccgttcgc catgaccctt cccgcgatct ccaagcacct gtcggtgctc gaacgagccg
     3301 gcctgatcgt caagagccga gatggacaac gccgccactg ccgcatcacg accactccgc
     3361 tgaagaacgc caccgcctgg ctggacgact accgccgcca ctgggaggcc aacctcgaca
     3421 gcctcgacac ctacctgtca aaaatccaga accaggagaa gtagccatga gcaacaccgc
     3481 cttcaatacc caccagcgcg ccaccgttac gccggacggc agccagctcg tcatcaccag
     3541 gaccttcgcc gctccggcct cgctggtcta cgaggcgatg accaaccccg agcacatccg
     3601 ccagtggtgg ggtgctgggc acggcgaggt caccgtctgc gaggtcgatc tgcgggtcgg
     3661 tggtcgctgg cacttcgccc aggtcacccc ccgtggcgag gaggtgtcct tctccgggga
     3721 gtaccgcgag ctcgacccgc ctggtcgcat cgtgcacacc gaggtctacg acaacatcca
     3781 gagccccgcg gcactggtcg agtccacgta caccgaggag ggcgggttca ccacgctgcg
     3841 ggccgtcatc acctacgact cgccgcagag cgtcgaaatg gtcttggctt ccggaatgga
     3901 gagtgggctc aacgactcct acgacgccct cgagaggctg gtcatgagcc tcgaccgccg
     3961 gcgctgaccc gagccgcctc ggcgcccagc acgagctgcc gtcaggcgcc cagcacgagc
     4021 tgccgtcagg cgcccagcac gacgagccgt ccggtgctct c
//
LOCUS       DASYFY010000258         1756 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_912298, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000258 DASYFY010000000
VERSION     DASYFY010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_912298"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /gene="tpiA"
                     /locus_tag="VGN19_05180"
     CDS             complement(<1..659)
                     /gene="tpiA"
                     /locus_tag="VGN19_05180"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEV7195313.1"
                     /translation="MAAKPTGRTPLMAGNWKMNLDHLQATHLVQKLDWTLRDGKHDYA
                     TVEVAVLPPFTDLRSVQTLIDGDRLHLSHGAQDLSVHDAGAYTGEVSGAFLAKLGCTY
                     VLAGHSERREYHGETEEVVNAKLKAAFRHGLTPIFCVGEHLEIRQEGKHLEHVLMQLE
                     AGLRDIPADQAKTLVVAYEPVWAIGTGEVATPEDAQEVCGEVRLTLASMYPGELADGV
                     RV"
     gene            complement(659..>1756)
                     /locus_tag="VGN19_05185"
     CDS             complement(659..>1756)
                     /locus_tag="VGN19_05185"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEV7195314.1"
                     /translation="ITKLSAAGAKVVVCAHLGRPKGAPEERFSLAPVAARLSELLGQH
                     VAFATDTVGEAARAAVDAAADGDVVVLENLRFNPGETAKTDEERAEFAAQLAGLADAF
                     VSDGFGVVHRKHASVYDVARLLPSAAGGLVEAEVAVLKRLTTNPERPYAVVLGGAKVS
                     DKLAVIDNLLKTADRLLIGGGMVFTFLAAQDYEVGKSLLEADQIEAVKGYLDKANQTG
                     VEIVLPVDIVAATAFSGDADPRIYPTGMIPADRMGLDIGPESGYLFAEKLKDTRTVFW
                     NGPMGAFEIEPYEAGTDAVAEALVERTEHGALTVVGGGDSAAAVRQLGYDDDQFGHIS
                     TGGGASLEYLEGKELPGLAVLDEQKDQESTP"
BASE COUNT          248 a          616 c          601 g          291 t
ORIGIN      
        1 acgcggacgc cgtcggccag ctcgcccggg tacatcgagg ccagcgtgag ccggacctcg
       61 ccgcacacct cctgggcgtc ctcgggcgtc gccacctcgc cggtgccgat ggcccagacc
      121 ggctcgtagg cgacgaccag cgtcttggcc tggtcggcgg ggatgtcgcg caggcccgct
      181 tcgagctgca tgagcacgtg ctccaggtgc ttgccctcct ggcggatctc gaggtgctcg
      241 cccacgcaga agatcggcgt gaggccgtgg cggaacgccg ccttcagctt ggcgttgacg
      301 acctcctcgg tctcgccgtg gtactcgcgc cgctcgctgt gccccgcaag gacgtaggta
      361 cagcccagct tggcgaggaa ggcgcccgac acctcgcccg tgtaggcgcc ggcgtcgtgg
      421 acggagaggt cctgcgcacc atgcgacagg tggagccggt cgccgtcgat gagggtctgg
      481 acggatctca ggtcggtgaa cggcggcagc accgccacct cgacggtcgc gtagtcgtgc
      541 ttgccgtcgc gcagcgtcca gtcgagcttc tgcacgaggt gggtcgcctg gaggtggtca
      601 aggttcatct tccagttgcc tgccatgagt ggcgtgcgac cggtgggttt ggctgccatc
      661 agggcgtgct ctcctggtcc ttctgttcgt cgagtacggc cagtccgggc agctccttgc
      721 cctcgaggta ctccaggctg gcgccgccgc cggtcgagat gtgcccgaac tggtcgtcgt
      781 catagcccag ctggcgcacc gcggcggcag agtcaccgcc gccgaccacc gtgagcgcgc
      841 cgtgctcggt ccgctccacg agggcctcgg cgacagcgtc ggtgccggct tcgtacggct
      901 cgatctcgaa ggcacccatc ggaccgttcc agaacacggt cctggtgtcc ttcagcttct
      961 ccgcgaacag gtagccggac tcggggccga tgtccaggcc catccgatcg gcgggaatca
     1021 tgccggtcgg atagatgcgc gggtcggcat cgcccgagaa cgccgtggca gcaacgatgt
     1081 cgaccggcag gacgatctcc acgcccgtct ggttggcctt gtcgaggtag cccttgaccg
     1141 cctcgatctg gtcagcctcg agcaggctct tgccgacctc gtagtcctgg gcagcgagga
     1201 aggtgaagac cattccgccg ccgatgagca ggcgatcggc ggtcttgagc aggttgtcga
     1261 tcacagccag cttgtcggac accttggcac cccccaggac cacggcatac gggcgctcgg
     1321 ggttggtggt cagcctcttg aggaccgcga cctcggcctc gaccagccca ccggctgcgc
     1381 tgggcagcag gcgcgccacg tcatagaccg acgcatgctt gcggtggacc acgccgaagc
     1441 cgtccgacac gaaggcgtcg gccagcccgg cgagctgtgc cgcgaactcc gccctctcct
     1501 cgtcggtctt ggccgtctcg cccgggttga acctcaggtt ctccaggacg acgacgtcac
     1561 cgtccgcggc ggcgtcgacc gctgcccgcg ccgcctcccc caccgtgtcg gtggcgaagg
     1621 cgacgtgctg accgagcagc tcgctcagcc gagcggccac gggagcgagg gagaaccgct
     1681 cctcaggcgc tcccttcggc cggcccaggt gggcgcagac gacgaccttc gccccggctg
     1741 cggacagctt cgtgat
//
LOCUS       DASYFY010000259         5185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1385920, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000259 DASYFY010000000
VERSION     DASYFY010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5185
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1385920"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..616
                     /locus_tag="VGN19_05190"
     CDS             <1..616
                     /locus_tag="VGN19_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011693315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195315.1"
                     /translation="SALLAVADDVDLVDVVANPELLLRSVAVNSPDAVLTDIRMPPTH
                     TDEGIRVAKQIRAQHPGVGVVVLSQYVEEDYAFDLLAEGVAGMGYLLKERVSDLAELI
                     RALHEVARGGSVLDPLVVEALLARRAGEGPLLGLTEREREVLQVMATGRNNATIAKTL
                     FMSDRAVEKHIGSVFQKLGLVEEHETNRRVMAVLAYVDASGSSR"
     gene            710..2086
                     /locus_tag="VGN19_05195"
     CDS             710..2086
                     /locus_tag="VGN19_05195"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195316.1"
                     /translation="MGTGRVIDRLHRGGIQRLVVIVGLAGFVVGVYSVLVLGIGVLIG
                     HTDSPSLPLSVLATTVVALLFAPVQTILERVTSARLPGGVTAPYDLLRRFSRPESDGD
                     ATEDLPAVMSRLLAEATGAQWAQVWLSVSGRLTLAATWPADSEEGRTPPVTRPDARDA
                     TGRGRRALTVQYGEQSLGVLRLQERPGLALTTVEERLFVALASQAGLMLRLVAVRAEL
                     EDRHQELVARAGELQASRDRLIQAQDTERRRLERDIHDGAQQHLVALAVNLRVAQTVA
                     ASSPERAARMLGEQAEAARVAIATLSSLSRGIYPRILAEEGLLPALRAAVGTSAIPVT
                     VTSDQVARLPASVEAALYFCCIEAVQNAAKHSAAAAVAVRLSEDRDLWWLVVTDDGAG
                     FDPARMHLSGMGLANMRDRLDVVSGTVDVRSVAGGGTTVSASVARTAAPGTAVSRGMP
                     VPTPGRGG"
     gene            2088..4124
                     /locus_tag="VGN19_05200"
     CDS             2088..4124
                     /locus_tag="VGN19_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195317.1"
                     /translation="MRIRLAWAMFGVTVICTILDTAFTAAYRPLLSEATWAEHGWPLA
                     PLANLGCALMGALIVSRHPRHLIGWLLCIASLLSVTLAAEAFSLWVLDGGGPGPASWG
                     HLAAWAGPLLGWPAFTALVLVFLIAPDGHLATPRWRWVVRVTVAGLILHTAGTLTTPP
                     GDFVYGQRDSSRVITAPLLTVGYLLIAAGLIASAVSLVVRLRRSKDDERRQLLWIASA
                     AALLALGVVLILVVPRMTGVEGTWLAGLPLRLAQVAVPFCVAVAVLRHRLLDIDVIVN
                     RAVLLALATAFVAAGYILVVVTVGLAVGVVGGFWPSLLATAVVALAFQPLRSSLVRVA
                     DRLAFGGAAAPYEALAEFSRRLGESPDPSTFLPAMAKAAARAVNANRAVVVLRLDLGP
                     DLTTVWTAEGVDRITTAAWEIPVLDHGERLGSITVFMPSGHALRPREQRLLADLADQA
                     GMAFRNDRLTAELPRQVAQISRRTGELSESRRRLISANDAERSRLEQAIAHQVILHLE
                     PLPKRLHQLSDADRVTSPLMDAELLRASIESVNIAMEALREITRGVFPAQLARSGLAI
                     ALGSLLTRTPGAPRLVVEESVRGRRFGTRVEAAAYFCVVEATRDLSPPVLVVLATRDD
                     QLQLVVRGGDGGALALAHMRDRVEAAGGSMSVESNDGHTLLETVLPAPRTAAAY"
     gene            complement(4163..4531)
                     /locus_tag="VGN19_05205"
     CDS             complement(4163..4531)
                     /locus_tag="VGN19_05205"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195318.1"
                     /translation="MDVRILLVDDQAAYRRAMSSVVEETRGFVVVGEASSGEESIVVA
                     ARTFPDLVLMDVNLPGIDGMQATRLLRAGDPRPVVVLFSTYDEDVGQHFVAESGAAAY
                     VTKSAFGPDRLLRCWRAAIG"
     gene            4757..>5185
                     /locus_tag="VGN19_05210"
     CDS             4757..>5185
                     /locus_tag="VGN19_05210"
                     /inference="COORDINATES: protein motif:HMM:NF025687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4386 domain-containing protein"
                     /protein_id="HEV7195319.1"
                     /translation="MSRRKTAVAVGVLFFAQMITGMFGTSLIQAFVDGDTDRTRVSVG
                     VLLMVCSGIAVVGIGLLMYPILKPVNRWLALSYSVLRVAEFTVSTLCGVYLLAQLQVV
                     PNHLLWVYIPTGLGGLVLNYLLFVSKLVPRPIAVLGLVGYL"
BASE COUNT          739 a         1805 c         1765 g          876 t
ORIGIN      
        1 ctcggcgttg ctcgccgtgg ccgacgacgt cgacctggtg gacgtcgtgg cgaaccctga
       61 gctgctgctc agatccgttg ccgtgaactc cccggatgcc gtgctgaccg acatccgcat
      121 gcctccgacc cacaccgacg agggcatccg ggtggcgaag cagattcgcg cgcagcatcc
      181 gggcgtcggc gtcgtcgtcc tgtcgcagta cgtcgaggag gactacgcct tcgacctgct
      241 cgccgagggg gtggccggga tggggtacct gctcaaggaa cgagtcagtg accttgccga
      301 gctgatccgc gctctgcacg aggtggcccg cggcggttcg gtgctcgacc cgctggtcgt
      361 cgaggcgctg ctcgcccgtc gggccggcga aggtccactc ctggggctca ccgaacgaga
      421 gcgcgaggtt ctccaggtga tggcgaccgg tcgcaacaat gcgacgatcg cgaagacgtt
      481 gttcatgagc gaccgcgctg tcgagaagca catcggctcg gtcttccaga agttgggttt
      541 ggtcgaggag cacgagacga accggcgcgt catggcggtg ctggcctacg tggatgccag
      601 cggctccagc cgctgaacgg gtccgagccc ggtgggtgtg gccggcctgc ttcccggggg
      661 tttggtccag acgctcccca gcgctgccaa caggtccaca ctgcaactca tggggacggg
      721 ccgcgtcatc gaccggcttc accgcggcgg gatacaacgg ctggtggtga tagttggtct
      781 tgccggcttc gtggtgggcg tctactcggt cctggtactc ggcatcgggg tgctgatcgg
      841 tcacacggac tcacccagcc tgcccctgtc ggtgctagcg accaccgtcg tggcgctgct
      901 gttcgcaccc gtgcagacca tcctcgaacg ggtcacctcc gcaaggttgc ccggtggcgt
      961 gaccgcgccg tacgacctgc tgcgacgctt cagccggccc gagtctgatg gcgacgcgac
     1021 ggaggacctt cccgcggtga tgtcaaggct cctggccgag gccaccgggg ctcagtgggc
     1081 gcaggtctgg ctctcggtct ccggccgcct gacgctggcg gccacctggc ccgcggacag
     1141 tgaggagggc cggacccccc cggtgacgcg acccgacgcg cgagacgcca ctggtcgggg
     1201 tcgccgggcc ctcactgtgc agtacggcga gcagtcgttg ggcgtcctcc gtctgcagga
     1261 gcgacccggg ctggcgctca cgaccgtgga ggagcggctg ttcgtcgcgc tggcgtcgca
     1321 ggccggcctg atgcttcgtc tggtggcggt gcgggcggag ctcgaggacc gccatcagga
     1381 gctggtcgcc cgcgccggag agctgcaggc gtctcgagac cggctcatcc aagcccagga
     1441 caccgaacgg cggcgcctgg agcgcgacat ccacgacggc gctcagcagc atctggtggc
     1501 cctggcggtg aatctgcggg tcgcgcagac ggtcgcggcg agctcgcccg aacgggcggc
     1561 ccgcatgctc ggcgagcagg ccgaagcggc gcgggttgcg atcgcgacac tctcgtcact
     1621 gtcgcgtggc atctacccga ggatccttgc cgaggagggc ctgctgcccg ctctgcgggc
     1681 cgcggtgggc accagcgcga tcccggtgac ggtcacctcc gaccaggtcg cacgactgcc
     1741 ggcatcggtt gaggcagcgt tgtacttctg ttgtatcgaa gcggttcaga acgccgcgaa
     1801 gcactccgcc gcggccgccg tggcagtgcg gctcagcgag gaccgcgatc tgtggtggct
     1861 cgtggtgacc gatgacgggg ccgggttcga cccggcacgg atgcacctca gtggcatggg
     1921 gctggccaac atgcgtgacc ggctggatgt ggtcagcggg acggtcgacg tcaggtcggt
     1981 ggcgggtgga ggcacgacgg tctccgcctc ggtggccaga accgccgcgc ccgggacggc
     2041 cgtttctcgg ggtatgccag tgccgacccc gggtcgggga ggctgacgtg cgcatccgct
     2101 tggcctgggc gatgttcggc gtgaccgtga tctgcacgat cctggacact gccttcaccg
     2161 cggcctaccg cccgctgctg agtgaagcga cctgggccga acatggatgg ccgctggctc
     2221 cattggccaa tctcggctgc gcgctcatgg gtgccctcat cgtctcgcgc cacccacgac
     2281 acctcatcgg ctggctgttg tgcatagcga gcctcctctc ggtcaccttg gccgccgaag
     2341 ccttcagcct ctgggtactc gacggcggtg gtcccggccc cgcgtcctgg ggccacctgg
     2401 ccgcatgggc cggaccgctg ctcggttggc cggcgttcac cgccctggtg ttggtcttcc
     2461 tcatcgcacc ggacggccac ttggcaacac cacgctggcg atgggtcgtc cgcgtcaccg
     2521 tggccgggct catcctgcat acagccggga cgttgaccac gcctcccggg gacttcgtgt
     2581 acggccagcg cgacagcagc cgcgtgatca ccgcgcccct gctcacggtc ggctacctgt
     2641 tgatcgcagc cggtctgatc gcctccgccg tctcgctcgt ggtgcgcctt cgacggtcca
     2701 aggacgacga acggcggcag ctgctgtgga tcgcctccgc ggccgccttg ctggcgttgg
     2761 gtgtggtcct catcctggtg gtcccgcgga tgaccggagt ggagggaaca tggctcgccg
     2821 ggctgccgct gcgcctggcc caggtcgccg ttccgttctg tgtggcggtc gcggtgctac
     2881 gccaccggtt gctcgacatc gacgtgatcg tcaatcgcgc cgtgttgctc gcgctggcca
     2941 ccgcgttcgt cgcggccgga tacatcctcg tcgtcgtgac cgtcgggctc gccgtcggtg
     3001 tcgtcggcgg cttctggccc tcgctgctcg cgacggccgt ggtcgcgctg gcgttccagc
     3061 cgctgcgaag cagcctcgtc cgggtcgccg accgcctggc gttcggtggt gcggccgcac
     3121 cctacgaggc cctggccgag ttcagccgcc gcctcggcga gagcccagat ccctcgacgt
     3181 tcctgccggc catggccaaa gcggccgcac gcgccgtcaa cgcgaatcgg gccgtcgtcg
     3241 tcctgcgcct ggatctcggc ccagacctta cgacggtctg gaccgccgag ggggtggacc
     3301 ggatcacgac cgctgcttgg gagatcccgg tcctcgacca cggcgaaagg cttggcagca
     3361 tcacggtgtt catgccctct ggacacgcat tgcggccccg ggagcaacgg ctgctcgctg
     3421 accttgccga ccaggccggg atggccttcc gcaacgaccg gctcaccgcg gagctgccac
     3481 ggcaggtggc gcagatcagc cgtcgcaccg gcgagctgag cgagtcccgc cgccggctga
     3541 tcagcgccaa cgatgcggaa cggagccgac tggaacaggc catcgcccac caggtgatcc
     3601 tgcacctgga accgctcccg aagcgtttgc accagctgtc ggacgccgac cgcgtgacgt
     3661 cccccctcat ggatgccgag ctgctccgag cctccatcga gtcggtgaac atcgccatgg
     3721 aggcgctacg ggagatcacc cgaggggttt tcccggccca gctcgcacgc tccggcctgg
     3781 ccatagccct ggggtcactt ctgacccgaa ctccgggcgc cccgcgactg gtggtcgaag
     3841 agtccgttcg cggacgacgg ttcggcacga gggtcgaagc cgcggcgtac ttctgcgtcg
     3901 tcgaggccac gcgcgacctc agccctcccg tcctggtcgt cctcgccact cgcgacgacc
     3961 agctgcagct ggtggtgcgt ggtggagatg gcggtgcgct agccctggcc cacatgcgcg
     4021 accgggtcga ggcagcgggc ggctcgatgt ctgtggagtc caacgatgga cacaccctcc
     4081 tggagactgt ccttccagca cccaggacgg ccgccgccta ctgacgacgt cgacagagtt
     4141 cgaccaagat cgaggcgaga gatcagccga tggcggcccg ccagcaacgg aggagccggt
     4201 ccggtccgaa cgccgattta gtgacgtacg ccgctgctcc tgactcggcg acgaagtgct
     4261 ggccgacgtc ctcgtcgtag gtcgagaaca ggaccaccac cggccgaggg tcccccgcac
     4321 gcagcagtcg ggtcgcctgc atcccgtcga taccaggcag gttcacgtcc atgaggacga
     4381 ggtcggggaa cgtccgggcg gccacgacga tcgactcctc ccccgatgag gcctcgccga
     4441 cgacaacgaa cccgcgggtt tcctcgacca cggaggacat ggcgcgccga taggccgcct
     4501 ggtcgtcgac cagcagaatt cgcacgtcca cgacctatca cctccacggc cgagcctgcc
     4561 gcagatgatc tcagcaagga ggggggccag ccgcacgtcc ggcggtgctg gacccgcatc
     4621 gtgtgctgcc agccccatcg tggtgacccc ggagccttcc tagcgtcgaa ggtgcgctcg
     4681 acaaccgtcg cgtcaccacc gcgcagccga catcccgagc actgggaatg tccccacgct
     4741 ccatcgaagg agagtcatgt cacgaaggaa gaccgcggtc gccgtcggcg tcttgttctt
     4801 cgcccagatg atcaccggca tgttcggcac ctcgctgatc caggcattcg tggacggtga
     4861 caccgaccga acacgggtca gcgtcggcgt cctgctgatg gtgtgctccg gaatcgccgt
     4921 ggtcggcatc ggcctgctga tgtaccccat cctcaaaccc gtgaaccgct ggctcgccct
     4981 ctcgtactcg gtgctcagag tcgccgagtt caccgtctcc accctgtgcg gcgtgtacct
     5041 gctggcacag ctgcaggtcg tccccaacca cctgctctgg gtgtacatcc cgaccggcct
     5101 tggcggcctc gtcctgaact acctgctgtt cgtctccaag ctggttcccc gacccatcgc
     5161 cgttctcggg ctcgtgggct acctg
//
LOCUS       DASYFY010000260         2374 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1280856, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000260 DASYFY010000000
VERSION     DASYFY010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1280856"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VGN19_05215"
     CDS             <1..209
                     /locus_tag="VGN19_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020097792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEV7195320.1"
                     /translation="PFLVTKQTDMQPLAVTLADYISNVAGRAANPFGAILAGAVVLAG
                     PAVALFVAFQRHFINSDIGSGVKG"
     gene            206..1423
                     /locus_tag="VGN19_05220"
     CDS             206..1423
                     /locus_tag="VGN19_05220"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEV7195321.1"
                     /translation="MTTLGVGLVGAGRFGAFVAEATADLPGIEVRAVADPWMDRANAL
                     STAHGGRATPDWCDLLGASDIDIIVIATPPASHATIATAALEAGHHVFCEKPLATDET
                     QAQALVELVERSGRVLVVDHVLRYNPILRALAALQPELLGPVQSFSFDNDASDEDLDP
                     SHWFWDPTASGGIFVEHGVHFFDAAAMLIGRPATTVQASAARRGDAGPVDLVSATVMH
                     GARVLATHTHSFTHAHRCERQLMRLDHGAAEVRVEGWIPIDAAIDAWTNEEGARFVEH
                     LPSRVAEVMHVDGYRLDARARITARVHRDASHTSHARGRGLTLDVPHHVRVQLTLGGP
                     PAKAKVYAESVRAAMADLVSAVTTGSTPFSSVREGAAAVAVAAAATRAAQDGRSIAIT
                     DHLSPTSNRMRTA"
     gene            1420..>2374
                     /locus_tag="VGN19_05225"
     CDS             1420..>2374
                     /locus_tag="VGN19_05225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195322.1"
                     /translation="MTHTTLPNGHHSALGGWLVAATATLAVVLTAASAGVSSAQASAG
                     TPAVSRSATAPLTNLAHLDWLGARVTPPNQPGHTTYHLADQPQIGTLWTYAEPDGSGG
                     FRHVGGGSYDPATNTYGQGAYNADDMSRASVVYLRHWRATGSTSSRASAYEMLRGLTY
                     LQTADGPNAGNVVLWMQPDGKLHPSPQPQELPDPSDSDASYWLARTIWALGEGYSAFR
                     TTDPAFASFLRQRLELAVTALNHECLARYGQYLNIDGQPAPAWLIAGGADASAEAVLG
                     LSAYVEAGGSSAARTALAHLSEGIADLSSGNAQTWPFGAVRP"
BASE COUNT          378 a          892 c          758 g          346 t
ORIGIN      
        1 ggccgttcct ggtcaccaag cagaccgaca tgcagcctct cgccgtcact ctcgcggact
       61 acatcagcaa tgtcgctggc cgagcggcca accccttcgg ggcgatcttg gcgggcgccg
      121 tagtcctcgc cggccccgcg gtggccctgt tcgtggcgtt ccagcggcac ttcatcaact
      181 cggacatcgg ctcgggagtg aagggatgac caccctcggt gtcggcctcg tcggtgccgg
      241 tcggttcggc gccttcgtcg ccgaagccac cgcggacctg cccggcatcg aggtacgcgc
      301 cgtcgccgat ccctggatgg accgggcgaa tgccctgagc accgctcacg gtggccgggc
      361 aacccccgac tggtgcgacc tcctcggtgc cagcgacatc gacatcatcg tgatcgccac
      421 acctccagcc agtcacgcca ccatcgcgac agcggccctg gaggccggcc accacgtgtt
      481 ctgcgagaag cccttggcga ccgacgagac ccaagcccag gcgctcgtcg agctggtgga
      541 gcgcagtggc cgcgtcctgg tcgtcgacca tgtgctgcgc tacaacccga tccttcgggc
      601 cctggccgct ctgcagccgg agctgctggg tccggtacag agcttcagct tcgacaacga
      661 cgccagcgac gaggacctcg acccctcgca ctggttctgg gacccgacgg caagtggcgg
      721 catctttgtc gagcacggag tgcacttctt cgacgccgcg gccatgctca ttggccgacc
      781 agccaccacg gtccaggcga gcgccgctcg gcgtggcgac gccggaccgg tcgacctggt
      841 cagcgcaacg gtcatgcacg gtgcgagggt ccttgccacc cacacccaca gcttcaccca
      901 cgcccaccgg tgtgagcgcc agctcatgcg gctggatcat ggagcggccg aggtgcgagt
      961 cgagggatgg atcccgatcg acgccgccat cgacgcgtgg accaacgagg agggagcacg
     1021 gttcgtcgag cacctgccgt cgcgggtcgc cgaggtcatg cacgttgatg ggtaccgcct
     1081 tgacgcccgg gcgaggatca cagcccgcgt gcaccgcgac gccagccaca cctctcacgc
     1141 tcgcggtcgg ggcttgacgc tcgacgtccc gcaccacgtc cgtgtccagc tcacccttgg
     1201 cgggccgccc gccaaggcca aggtctacgc ggagagtgtt cgagcggcga tggccgacct
     1261 ggtgagcgca gtgaccacgg gttcgacccc cttcagctcc gtccgggaag gcgccgcagc
     1321 ggtcgccgtc gcggcagctg cgacccgcgc cgcccaggac ggccggtcca tcgctatcac
     1381 cgaccacctc agccccacct caaaccgaat gaggaccgca tgactcacac aacgctgccc
     1441 aacggccacc actctgcgct gggcggctgg ctcgtcgccg ccacggcaac cctggcagtt
     1501 gtcctcaccg ccgcctcggc gggcgtgagc tcggcccagg cgtccgccgg cacgcccgcg
     1561 gtgtcccggt cggcaaccgc gcccctgacg aacctcgccc atctcgactg gctgggtgcc
     1621 cgggtgacgc cccccaacca acccggacac acgacctacc acctcgccga ccagccgcag
     1681 atcggcaccc tgtggacgta tgccgaaccc gacggcagcg gtggctttcg ccacgtcggc
     1741 gggggcagct acgaccccgc gaccaacacg tacgggcaag gcgcctacaa cgcggacgac
     1801 atgtctcgag cttccgtggt gtacctgcgc cactggcggg ccaccgggtc gacgtccagc
     1861 cgtgccagcg cgtacgaaat gctccgggga ctgacctatc tgcagaccgc tgacgggccg
     1921 aacgcgggaa acgtcgttct gtggatgcag cccgacggga agctgcaccc cagtccccag
     1981 ccgcaggagc tgcccgaccc gtcggacagc gatgcgtcct actggctggc acgaaccatc
     2041 tgggcgctag gcgagggcta ctccgcgttc cgcacgacgg acccagcctt tgcgtcgttc
     2101 ctgcgtcagc gactcgagct tgccgtcacg gcgctcaatc acgaatgtct ggcgcgctac
     2161 ggccagtacc tcaacatcga cggccagccc gcgccagcgt ggctcatcgc gggcggcgct
     2221 gacgccagcg ccgaggctgt gctgggcctg tccgcctacg tggaagcggg cggctcgtcc
     2281 gcagcccgaa ccgcactagc ccatctgagc gaaggcattg ccgacctgtc gagcggcaac
     2341 gcccagacct ggccgttcgg tgcagtccgg ccgt
//
LOCUS       DASYFY010000261         2808 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_387160, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000261 DASYFY010000000
VERSION     DASYFY010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387160"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..134)
                     /locus_tag="VGN19_05230"
     CDS             complement(<1..134)
                     /locus_tag="VGN19_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015937345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor family protein"
                     /protein_id="HEV7195323.1"
                     /translation="MKSAVETLNPTRVKLTVEVPFEELKPSLDAAYATIGSQIQVPGF
                     R"
     gene            293..1735
                     /locus_tag="VGN19_05235"
     CDS             293..1735
                     /locus_tag="VGN19_05235"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020075255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7195324.1"
                     /translation="MSEQFDVVVVGAGPVGENAADRANKAGLRVAVVERHLVGGECSF
                     YACSPSKALLRPIHATRASQRVQGSVGARLDPEGVLARRDAWINRVGTSDTLDDSGQV
                     GWLEHVGITLVRGVGRLAGDRVVEVGDRRLEARHAVVLSTGSRAFVPDIPGLAQARPW
                     TNREATTSRAVPDRLAILGGGVVACELAQVYAALGSQVTVLSRSGLLARSEPFAGEAV
                     AEALGRDGVELRFGVSPTSVSRLASGEVTLTLDDSSTLTVDELLVATGRVPATAELGL
                     DTVDARTDEHGYVVVNERMEVAHGRRGAPTATSPTAPWLYAVGDVNGIALLTHMGKYQ
                     ARAVGDLIGARAAGREPDPHLTAPFATSLGSPQVVFTDPEVSSAGLTEAQARARGIRL
                     RVVDVPMDSAAGSGLQAEGYQGRLRAVVDEDAGVLVGVTLVGQDVAELVHAATVAIVG
                     RVPLTTLWHAVPSYPTMSEIWLRVLEEYGV"
     gene            complement(1760..1833)
                     /locus_tag="VGN19_05240"
     tRNA            complement(1760..1833)
                     /locus_tag="VGN19_05240"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1797..1799),aa:Pro,seq:tgg)
     gene            1957..2030
                     /locus_tag="VGN19_05245"
     tRNA            1957..2030
                     /locus_tag="VGN19_05245"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1989..1991,aa:Gly,seq:tcc)
     gene            2134..>2808
                     /locus_tag="VGN19_05250"
     CDS             2134..>2808
                     /locus_tag="VGN19_05250"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEV7195325.1"
                     /translation="MPAQTDGRGTGVRRAEVLAALSISIDLGLGLPMEHVLRSSLVAA
                     MLADELELSPQGRATVYYTNLVLWIGCHADSHEFSRWFGDDLAMRRDSYQLDWSGLPY
                     LRYLLHHAGSGQSLTRRTQMQLTLMLAPRTRMATLIHSHCLSAGLMAQRIGLDRTVAE
                     AVECAFERWDGTGLPGGRRGDLIPLATRVVQLAETCEVHQRTHGTSGALAMARERSGT
                     QFDPSLV"
BASE COUNT          399 a          955 c         1014 g          440 t
ORIGIN      
        1 cggaagccag gcacctggat ctgggagccg atggtcgcgt atgccgcgtc gaggctcggc
       61 ttgagctcct cgaaggggac ctcgacggtc agcttgaccc gggtcgggtt gagggtctcg
      121 acggcactct tcactgcgaa gtactccaga atcgtggggc aatgggaagg cccgcgcgcc
      181 ggcgatgggg gcggcgaccg ggccaaaggc tcatcgtagc cgttgtgtcg tcagcgaccg
      241 aactcgcgcc gtcggcacgc gacgtcgccg agggcgcctt aggttgagtc gcatgagcga
      301 acagttcgac gtggtggtgg tcggagcggg gccggtcggt gagaacgctg cggaccgcgc
      361 gaacaaggcg ggcctgcggg tggccgtggt ggaacggcat ctggtcggtg gcgagtgcag
      421 cttctacgcg tgctcgccga gcaaggcgct gcttcgcccg atccacgcga cccgcgcctc
      481 tcagcgggtc cagggctcgg tcggcgctcg cctcgacccc gagggggtgc tcgcccgacg
      541 tgatgcctgg atcaaccggg tcgggaccag tgacacgctc gacgacagcg gtcaggtggg
      601 ctggctcgag cacgtgggca tcacgctggt ccggggcgtg ggccggcttg ccggggaccg
      661 tgtcgtcgaa gtgggtgacc gccggctcga ggcccggcac gccgtcgtcc tctccaccgg
      721 gagcagggcc ttcgtgcccg acatccccgg actggcgcaa gcccgtccgt ggaccaaccg
      781 cgaagccacc acgtcccggg cggtccccga ccggctcgcc atcctcggcg gcggcgtggt
      841 ggcgtgcgag ctggctcagg tctatgccgc cctcgggtca caggtcaccg tcctcagccg
      901 ctccggcctg ctggcgcgca gcgagccgtt cgccggtgag gcggttgccg aggcattggg
      961 ccgcgacggg gtggagctgc ggttcggcgt cagccccacg tcggtgtccc gtctggcttc
     1021 gggcgaggtg acgctcaccc tcgacgattc ctccaccctg acggtcgacg agcttctggt
     1081 cgctaccgga cgggtcccgg ccacggccga gctcggtctc gacaccgtcg acgccagaac
     1141 ggacgagcac ggctacgtcg tggtcaacga gcggatggag gtcgcccacg gccgacgggg
     1201 ggcgccgacc gcgacgtcac ccacggcgcc ttggctgtat gccgtgggcg acgtcaacgg
     1261 catcgccttg ctgacgcata tgggcaagta ccaggctcgc gccgtcggcg acctcatcgg
     1321 tgcgcgtgcc gcgggtcggg agcccgatcc gcacctgacc gcaccgttcg ccacgagcct
     1381 gggctcgcct caggtggtgt tcacggatcc ggaggtgagc agcgcggggc tgaccgaagc
     1441 acaggcccgg gcgcgcggca tacgactgcg tgtggtggac gtcccgatgg actcagcggc
     1501 gggctcgggc ctgcaggcgg aggggtacca ggggcgactg cgcgccgtgg tcgacgagga
     1561 cgcgggcgtt ctggtcggcg tcacgctggt cggtcaggac gtggccgagc tcgtgcatgc
     1621 ggcgacagtg gccatcgtcg gccgcgtgcc cctgacgacg ctgtggcatg cggtcccctc
     1681 gtatcccacg atgagtgaga tctggttgag ggtgctcgag gagtacgggg tctaggcaag
     1741 tcctgcggtc gagaatctgt cggggtagcc ggatttgaac cggcggcctt ccgctcccaa
     1801 agcggacgcg ctaccaacct gcgccatacc ccgcggcggc gagccgattt cggcccacgc
     1861 gatcgcgggc attaggctaa cgcctcgggt cggccaccca cgcaacgccc tggcatgacg
     1921 ctcatgtcgg ggctgcagcg ggacggctgg tccggtgcgg gcgtagctca atggtagagc
     1981 cccagtcttc caaactgact acgcgagttc gattctcgtc gcccgctcca cccacgaaac
     2041 cgcaggccag ggacaccctc cctggcctgc ggtttcgcgc agagacgggt cagcccgccg
     2101 ccgcggccgc cccacgcatg ccagactttc gccatgccgg cgcagaccga tggtcgcggg
     2161 actggggtac gccgggccga ggtgttggcc gcgttgtcga tctccatcga cctcggactc
     2221 gggctgccga tggagcacgt cctgcggtcc tcgctcgtgg ccgccatgct ggcggacgag
     2281 ctggagcttt ccccgcaagg gcgggcgacc gtctactaca cgaacctcgt cctgtggatc
     2341 gggtgccatg cggactcaca cgagttcagc cgctggttcg gcgacgacct ggcgatgcgc
     2401 cgagacagct atcagctcga ctggtccggc ctgccatacc tgaggtatct cctgcaccac
     2461 gcaggctccg gccagtcgct gacccggcgc acccagatgc agctcacgct catgctggca
     2521 cctcggaccc ggatggcaac cctgatccat tcgcactgcc tgtcggcagg cctgatggcg
     2581 cagcggatcg ggctcgatcg caccgtggcc gaggccgtcg agtgcgcctt cgaacggtgg
     2641 gacggcaccg gcctgcccgg gggccgtcgc ggcgacctga tccccctcgc gacgcgggtg
     2701 gtccagctgg ccgaaacctg cgaggtgcat cagcgaaccc atggcacctc gggcgcgctt
     2761 gccatggcca gggagcgcag cggcacccag ttcgacccgt cgctggtt
//
LOCUS       DASYFY010000262         3839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_492069, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000262 DASYFY010000000
VERSION     DASYFY010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492069"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            167..1117
                     /locus_tag="VGN19_05255"
     CDS             167..1117
                     /locus_tag="VGN19_05255"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7195326.1"
                     /translation="MTVSYPLNTVVVGCDDSWQSHAAVEAATLEAGRRHCSLVVLSVA
                     RADGLRGGLAAMRAWEQDAVAAATATAKRAAARANDTDGTVPVQIVVAGSVDDAQVAD
                     AARRADLLVVGGYGSRGQAAFSLGTISGELVRRFGTPVLVPRRERATAPGSWHDRPPE
                     VLVGISPARGATQPLRAAARQALLRGWSLAVVHTVPTTHPGQRLHHEQQAVWDAVRAV
                     PECASVPCRVEVVQEATVAALVSRCGPRDLLVVSTRGGGTLAGLIAGSVARGVLDASV
                     GDVMVVPALAGTSPGDVADDSANVLVGVLEEAPRGVRSTW"
     gene            1114..2100
                     /locus_tag="VGN19_05260"
     CDS             1114..2100
                     /locus_tag="VGN19_05260"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7195327.1"
                     /translation="MTTIYPATSGDVVVGFDGSRNATDAVVWAAQEALRQGTGLQIIS
                     SGYYPGMPSWVGVAGAPLPRSIELAAEELAGEGRRVAAKILPDDAIETRTMTSAAAPA
                     LIDASSEASLLVVGHRGHGAFASAVLGSVSAAVVQCAHCPVVVVRGSLEASASRLPVT
                     VGVDGTPESEAALLFAAQRAARDQVPLRIVCAWLTLTQTGWEFANWQGDDIEEWARGL
                     STSARQAADEARAKVQERWPDLRVDTRIVEAAPPLALEDASRESRLLVVGSHGTSALG
                     RLVLGSVSRTVLHHAVCPVAVVRPVGHTTRLSPLASPRARDRSLRLGDSAPR"
     gene            2138..2758
                     /locus_tag="VGN19_05265"
     CDS             2138..2758
                     /locus_tag="VGN19_05265"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEV7195328.1"
                     /translation="MLVRELMTSPATSLRAGSRLESAVQVLAAQRISAVPIVDAYGHV
                     VGIVSEADVLREGLPEDPRTHLRPTQESTTPWHRLVDDVMTVDPVTVGAHTDAARAAE
                     LMADMGWKSLPVVRDAQLVGVISRSDLMRALATPDAQVQQSIVHEFAQIGREDWTVEV
                     VDGMVTLRDVAPGRETRLARAIAETLPGVRRVLVEDQASSERADRP"
     gene            complement(2782..3237)
                     /locus_tag="VGN19_05270"
     CDS             complement(2782..3237)
                     /locus_tag="VGN19_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015938873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEV7195329.1"
                     /translation="MRVVTALGTTAVTAVILVTSWQAGQRSGSTAASGVQVVAGAGVS
                     ATPAKRPSGGKSAPALIRTVTGALVQTQYGNVQVRITLRGTRITRIVAVHLTDSSDTS
                     VQISAGAEPTLRSEALSAQSAHIDLVSGATFTSEGYKTSLQAAIDAAHR"
     gene            complement(3234..>3839)
                     /locus_tag="VGN19_05275"
     CDS             complement(3234..>3839)
                     /locus_tag="VGN19_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEV7195330.1"
                     /translation="FFNWRFNAPGLRAFAHPWSLSIMPSDRHLRLTVRDLGDHSRALA
                     RLRPGTRVLIEGPYGAFTTARRTHRKVLLIAAGIGITPIRSLAEELARDPAVKPGDIT
                     IAYRADDEDQLALRAELEQLTQPGGHALHLLTGPPTRGSWLPGGLPGRNDAERLSHLV
                     PNPRQHEVYVCGPAVWMDLVHSSLRAAGVPRAHIHDERFSW"
BASE COUNT          574 a         1256 c         1391 g          618 t
ORIGIN      
        1 gtagcagggg cgaaggtccc tctcatccga acacggcggt ggtgccgaac accggcggac
       61 tcgcccaaaa cgtaggacct agggcctgac cgcatgccca tcactgctcg cacagtggaa
      121 gtgattccgg catgggcgaa cgagcccaga aagcgtggcg agtgcaatga cagtctcgta
      181 cccgctcaac accgtggtcg tcggctgcga cgactcgtgg cagagtcatg ccgccgtcga
      241 ggccgccacc cttgaggccg gacgccgaca ttgctcgctg gtcgtgctgt cggtcgcccg
      301 cgccgacggc ctccgcggcg gccttgcggc gatgcgtgcg tgggagcagg acgccgttgc
      361 ggccgcgacg gctacggcga agcgtgctgc agcacgggcc aacgacactg atggcaccgt
      421 gccagtacag attgtggtgg caggctcggt cgacgacgcg caggtcgcgg atgccgcacg
      481 ccgggctgac ctgttggtcg tcggcgggta cggatcgcgg ggccaggcag cgttctcgct
      541 ggggaccatc agcggtgaac tcgtgcgccg cttcggcact ccggtgctgg tgccgcgccg
      601 cgaacgcgcg accgcaccag gaagttggca cgaccggccc cccgaggtcc tcgtcggaat
      661 cagcccagct cgcggcgcga cgcaacccct gcgcgcagca gcacgtcagg ccctacttcg
      721 aggctggtcg ctcgcggtgg tgcacaccgt gcccacgacg cacccgggcc agcggctcca
      781 ccacgagcag caagcagtct gggacgccgt acgtgccgtt cccgaatgcg cctccgtgcc
      841 ctgccgtgtc gaggtcgtgc aagaagccac ggtggccgcc ctcgtcagcc gctgcggccc
      901 gcgcgacctt ctggtcgtca gcacccgcgg tgggggcacc ctcgccggcc tgatcgcggg
      961 gtccgtcgcg cgcggcgtgc tcgatgcgtc ggtgggtgac gtcatggtcg tgcccgccct
     1021 tgccggcacc agtccaggtg atgtcgctga cgactctgcc aacgtccttg tcggcgtcct
     1081 tgaagaagcg ccacgaggag taaggagcac ctggtgacca ccatctaccc ggcgacatca
     1141 ggagatgtcg tcgtcggctt cgacgggtcg cgcaacgcca cggatgcggt ggtatgggca
     1201 gcccaggaag ccttgcgaca aggaaccgga cttcagatca tctcctccgg ctactacccg
     1261 ggaatgccgt cgtgggtcgg cgtggcaggc gcgccactgc ctcgttcgat cgagctggcg
     1321 gcagaagagc tcgccgggga gggccgcagg gttgccgcaa agatcttgcc ggacgacgcg
     1381 atcgagacac gcacgatgac ctcagccgca gcgcctgccc tgattgatgc gtcctccgag
     1441 gcgagcctgc tggtcgtggg tcaccgcggt cacggtgcgt tcgcttcggc tgttctgggg
     1501 tctgtgtccg ccgcagtcgt gcagtgcgca cactgtcctg tggtcgtcgt acgtggctcc
     1561 ctcgaggcgt cagcgtcgcg gttgcccgtg accgtgggcg tcgacggcac acctgagtcc
     1621 gaagcggcgc tgctgttcgc cgcacagcgc gcggcccgcg atcaggtccc cttgcgcatc
     1681 gtctgtgcgt ggttgacgct gacgcagact gggtgggagt ttgccaactg gcagggcgac
     1741 gacatcgagg agtgggcgcg ggggctgtcg acctcggcac ggcaggccgc tgacgaggcg
     1801 cgggcgaagg tgcaggagcg ctggccagat cttcgggtcg acacacgaat cgtcgaggca
     1861 gcgccgccgc tggcgctgga ggatgcgtcc cgcgagtcgc ggctcctggt ggtcggctcc
     1921 cacggcacca gcgcgctcgg gaggctcgtt ctcggctcgg tgagtcgcac cgtgctccac
     1981 cacgccgtct gccccgtggc cgtggtgcga cctgttgggc acaccacgcg tctaagccca
     2041 ttggcctcac cgcgcgctcg ggaccgcagc ctgagacttg gggacagcgc tccgcgctga
     2101 ctgaacccgg ccgcgatatc accatcagga ggtcgacatg cttgttcggg agctcatgac
     2161 cagcccggcc accagcctgc gggctggctc ccggctggag agcgcggtgc aggtcttggc
     2221 cgctcagcgc atcagtgctg tcccgatcgt cgacgcctac ggccatgtgg tcgggatcgt
     2281 cagcgaggct gatgttcttc gggaggggct cccggaggac ccccggaccc atctgcggcc
     2341 gacgcaggag tcgaccacgc cgtggcaccg gctcgtcgac gatgtcatga ctgtcgaccc
     2401 cgtcaccgtg ggagcgcaca cggatgcggc gcgcgcggcc gagctcatgg cggatatggg
     2461 ctggaagagc ctgccggtcg tgcgtgacgc gcagctcgtc ggcgtcatca gccgcagcga
     2521 tctgatgcgc gccttggcca cccccgatgc ccaggttcag cagagcatcg tccatgagtt
     2581 cgctcagatt ggccgggagg actggacggt ggaggtggtc gacggcatgg tgaccctgcg
     2641 cgacgtggcc cctggccgcg agacgcgact ggcccgggcg atcgcggaga cgttgcccgg
     2701 cgtgcgtcgc gtgctggttg aggatcaggc cagctcggag cgggccgacc ggccgtgaca
     2761 gacccgtacg gggcctggct cctagcggtg agccgcgtcg atcgcggctt ggaggctggt
     2821 cttgtacccc tcgctggtga aggtggcgcc gctgacgagg tcgatgtggg cggactgggc
     2881 gctcagcgcc tcgctgcgca gcgtgggctc ggcgcccgca ctgatctgga cggaggtatc
     2941 ggaggagtct gtgagatgta cggcgacgat gcgcgtgatg cgggtgccac gcaaggtgat
     3001 tctgacctgg acgttgccgt actgcgtctg tacgagggca ccggtgaccg tgcggatcag
     3061 ggcgggagcc gacttgccgc cggagggacg cttagccggc gtggccgaaa ctccggcccc
     3121 ggccacgacc tgaaccccgc tcgccgccgt tgagcccgaa cgctgcccgg cctgccagct
     3181 cgtcacaagg atgaccgcag ttaccgcggt ggtccccaac gcggtaacga ccctcaccag
     3241 ctgaaccttt cgtcatggat atgtgctcgc ggtaccccgg cagcccgaag actggaatgg
     3301 accaggtcca tccagaccgc gggaccacac acatagacct cgtgctggcg gggattgggc
     3361 accaaatgac tgagtcgctc tgcatcgttg cgtccgggca gacctcccgg gagccacgac
     3421 ccgcgggttg ggggccctgt cagcaggtgc agcgcgtgcc cacccggctg ggtcagctgc
     3481 tcgagctccg cacgcagggc gagctggtcc tcgtcgtcgg cgcggtaggc gatcgtgatg
     3541 tctcctggct tgaccgcggg gtcgcgggcg agctcttcgg cgagtgaccg aatcggggtg
     3601 atgccgatgc ctgccgcgat gagcaggacc ttgcggtggg tgcggcgggc cgtggtgaag
     3661 gcgccgtatg gtccctcgat gagcactcgc gtgcctggac gtaggcgagc cagggctcgg
     3721 gaatggtcac cgagatcgcg cacggtgagg cgcaggtgcc gatcgctggg catgatggac
     3781 agggaccagg ggtgggcgaa cgctcgaagt ccaggggcgt tgaagcgcca gttgaagaa
//
LOCUS       DASYFY010000263         9358 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_545222, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000263 DASYFY010000000
VERSION     DASYFY010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9358
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545222"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VGN19_05280"
     CDS             complement(<1..386)
                     /locus_tag="VGN19_05280"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7195331.1"
                     /translation="MAKARSTSAPRARARLERGAIVDAAIQLAGRGEQITFRALGREL
                     GADPTAVYRHFRDKDELLRAVIDHHYVEVLARLDRTLSWRDQLTELARQTLQMAMEHP
                     AIGVELRRLTTGGPGELATVETLLTLL"
     gene            565..2067
                     /locus_tag="VGN19_05285"
     CDS             565..2067
                     /locus_tag="VGN19_05285"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7195332.1"
                     /translation="MTSLVSKRTRSAALCAALATTLAACSGVANSPTSGAGSAYRLTT
                     DTPTPAKNIDSFSWSLYAEPQSLDYALAFDYPPNQVLANVCESLLRWNPDLTLSPGLA
                     EKFANPTPTTWVYTIRRGVTFHDGSPLTAADVVASLRRHLDPRVGSYWATAFVNVRSV
                     VQTGDRQVTVTLNKPDSLFNQFMAVTPGTIESAATLARAGKAYGTPSVGVNCTGPFSV
                     SSWKQGDSLTLKRYDGYWDRAHVAKSRSVRFVFLSDPITRVNAWTAGEVDGGWLVPAN
                     AYAQLKASGAGNLYHGVNTTVVSEVVTNTSGVLADKRVRQALLMATDRSGLVKTGEQG
                     VGEVATSLVSRNSWGGVPADQLGRIIGKLPSYHRDVQAAKALAKAAGVNGQRIVIATS
                     PILQSADAVTAAVAQAAKDIGLQPTIQTIPPDNYTALFTDPAARKGVDLMLTAWYTSL
                     ADPMDFLRSAAHRPVLQLRRLVQQGLRRGRRSGHRHPCWRSQPPRAAREG"
     gene            2078..2209
                     /locus_tag="VGN19_05290"
     CDS             2078..2209
                     /locus_tag="VGN19_05290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195333.1"
                     /translation="MDELPWLPMYTLPTSVWLGQRITGVKPSINFLYYPWAASIGGK"
     gene            2209..3597
                     /locus_tag="VGN19_05295"
     CDS             2209..3597
                     /locus_tag="VGN19_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017792102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEV7195334.1"
                     /translation="MDLHHLTATQSLKLFALGELSPVELLDACVRRTEQVEPTVNALT
                     EELLYDAYVAAREAERRYAGQGPAPRPLEGIPLVLKEEHAIAGRTLEEGSLLLRGRVA
                     EVTHPVVERVLAAGAVVHARSATPEFSCAPVTHSRLWGVTSNPWNPTMSPGGSSGGAG
                     AALAAGETMLATGSDIGGSIRLPASFCGVVGFKPPFGRVSGLPPFNADTFCADGPMGR
                     SVADVALLQNVLAGPHRADPVSLRPAYRIPAVPKGSASLRVALCVALGDYDVDPVIEA
                     NTRSAGEALRSVGVTVDEVTLPWTRQQIADAAWAHYGAVLGAAIGTVVGDHADDLMPY
                     TLDFAQRSATAASYAEGLLAEAAIYEPLGELLDNFDALLCPTVASTGFPADAGAQGAY
                     PWTEAMMTVPFNIAGRLPVLAVPSGIAPNGIPTGVQLVGKPYDDATVFRLGAALEEAL
                     ALWTSPDWWPTL"
     gene            3615..4553
                     /locus_tag="VGN19_05300"
     CDS             3615..4553
                     /locus_tag="VGN19_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017793513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195335.1"
                     /translation="MLRSLAAMVTTLFATSLLVFSSLRLAPGGPLQFLGQGRSPSPEA
                     LALAKEEYGLDRPFLSQYLHWVSGVVHGDLGKSFQFRSDVSALLAVRVAPTLTLITMA
                     ALLITVVGVMAGVVGALNAGRLADKTVLVLVTALAAVPPFVAAIMLISVFSVGLGWFP
                     TFGPGDGLLDRLHHLALPSVALALTFVALLGRVTRSAMLDELGREHVEVALSRGIPTR
                     TVIRRHVLRNALGPITTISGVVVAGLLVSSAVVESAFGLNGLGSLLVQSVDKRDFPVV
                     QAIVLTVVVTFVVCNVLVDLLQTVLDPRTLAGTAAR"
     gene            4550..5416
                     /locus_tag="VGN19_05305"
     CDS             4550..5416
                     /locus_tag="VGN19_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010155855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195336.1"
                     /translation="MTLSTVSLPPTWVRLRLRSLAGGRLASASGLVLTLMVAVAALAP
                     VLAPHDPNTTDLGNALSGPTTAHWLGTDQVGRDTLSRLMLGTRTSLVGPLAVVVIASL
                     LGVAVGLLAGWRGGWVDAVISRLLEIGFAFPGLLLAILAVSLFGKGLFAPVVAMSVAY
                     TPFMARQVRGLVQTIKTRPFVSAYTVQGFGPVSIAVRRILPNIAPLLLAQATVMFGYA
                     LLDLAALSFLGLGAQPPTSDWGAMINDGRGAVLLGQPLSALAPSIAVVVAVVAFNVVG
                     EQLGDRISRRDL"
     gene            5413..6303
                     /locus_tag="VGN19_05310"
     CDS             5413..6303
                     /locus_tag="VGN19_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195337.1"
                     /translation="MSPVSDQLLSIEDLWLRLPHVAQRAVISGLGLGVGRGELVGLVG
                     ESGSGKSLTARAVLGLLPAGARAQGRVLVEGLDVLSCDRRALRGLRASTVSMVFQDPR
                     AGVNPVRRIGDFLTEATRASGRHTRATATARAIELLDAVGLPDPALHLTQYPHQLSGG
                     MLQRVMIAGALMGEPRLLLCDEPTTALDVTTQAEIVAVLQRLQREQGLGMLFITHDLD
                     LAAAICDRVYVMYAGHIVEEGPAKVLFSAPRHPYTAGLLSSKPRLGDEDRPLDCIPGS
                     PASLLESALGAHADNLRGVS"
     gene            6300..7178
                     /locus_tag="VGN19_05315"
     CDS             6300..7178
                     /locus_tag="VGN19_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020380565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195338.1"
                     /translation="MNTQPLLEVVDLHKTYRVRGGTVDAVAGVTFDLRAGQTLGIVGE
                     SGSGKSTVARMLVGLEQPDAGRIVVCGRATDRPSHGRAERLARARSIQIVFQDPYLSL
                     DPRLPVGAAIESALGLHTQLSPPDRRQRVIDLLVQVGLGEGAAPALPRRLSGGERQRV
                     AIARALAVRPSVLVLDEAVSALDVSVQAQVLNLLADIRRETGVALVFISHDLAVVRHV
                     CDQTLVMHRGQVVERGATQGLLDSPQHPYTQLLRDAVPRPGWSPEEVVRAKARLGDES
                     TGRAPASAKPSSLSRI"
     gene            7236..8798
                     /gene="hutH"
                     /locus_tag="VGN19_05320"
     CDS             7236..8798
                     /gene="hutH"
                     /locus_tag="VGN19_05320"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HEV7195339.1"
                     /translation="MTQTTSTHAVTVGTGAVSFDDVVAVARYDARVVIAEESLAEVRR
                     SRAVIDALADDVIPHYGVSTGFGALATRHIPVELRAQLQRSLVRSHAAGSGPAVEREV
                     VRALMLLRISTLATGRTGIREETLTTYVAMLNAGITPVVHEYGSLGCSGDLAPLSHCA
                     LALMGEGVVRDANGERMPTAQAFTATGIAPVELHEKEGLALINGTDGMLGMLILAITD
                     LRQLLTVADITAAMSVEGQLGTDDVFAADLHALRPQPGQARSAENLRRIMRDSGIRES
                     HRDPQACTRVQDAYSLRCSPQVAGAVRDTVEYAATVAGFELRSAVDNPVVTLDGRLES
                     NGNFHGAPVAYVLDFLAIVAADLASISERRTDRFLDVARNHGLNAFLADDPGVDSGHM
                     IAQYTQAAIVSELKRLANPASVDSIPSSAMQEDHVSMGWSAARKLRRSVDGVTRVLAV
                     ELLTAARALDLRAPLEPAPATAAVVRALREAGAPGPGTDRFLAPEIETAVQLVASGGV
                     VAAAEAVTGPLN"
     gene            8868..>9358
                     /locus_tag="VGN19_05325"
     CDS             8868..>9358
                     /locus_tag="VGN19_05325"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494134.1"
                     /note="catalyzes the formation of
                     4-imidazolone-5-propanoate from urocanate during histidine
                     metabolism; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HEV7195340.1"
                     /translation="MEGARPVRAPRGSQLTAQHWGAEAPLRMLMNNLDPENAERPDDL
                     VVYGGTGRAARDWKSFDAMVRTLTTLKQDETMLVQSGRPVGVMQTHEWAPRVLIANSN
                     LVGDWATWPEFRRLEQLGLTMYGQMTAGSWIYIGTQGIVQGTYETFAAIAEKKFGGTL
                     AGTL"
BASE COUNT         1378 a         3343 c         3109 g         1528 t
ORIGIN      
        1 agcagcgtca ggagcgtttc cacggtcgcg agctcgcccg ggccgcccgt ggtgagtcgc
       61 cgcagctcga caccgatggc cggatgctcc atcgccatct gcaaggtctg ccgtgccagc
      121 tcggtgagct gatcacgcca cgacaacgtc cggtcgagac gggccagcac ctcgacgtag
      181 tggtggtcga tgaccgcgcg cagcagctcg tccttgtccc ggaagtgccg atacaccgcc
      241 gtcgggtccg cgccaagctc gcggccgagt gcacggaagg tgatctgctc gccccggccc
      301 gcaagctgga tggcggcatc cacgatcgcc ccacgctcca agcgggcgcg ggcacgggga
      361 gcggaagttg aacgagcctt cgccacaggt cctcctcagg ttgggctctg atcaaagcac
      421 atttccgacc aatgtcaacg ccgtagtcaa caccgttgac aaagccgttg acccgagtct
      481 agtctcgccc tcaattcgtg aacggcagtc ctctcaccac tgctcacgac ccgaccacga
      541 agcccttgca atcggaggat tgagatgacg agcttggtgt ccaagcgcac tcgcagcgcc
      601 gcgctttgcg cagctctggc gacaaccctg gcggcctgtt ccggggtggc caacagcccg
      661 acgagcgggg ccggatcggc ctaccgcctg accaccgaca cgccgacccc ggccaagaac
      721 atcgactcgt tcagctggtc gctgtatgcc gagccgcaga gcctcgacta cgcgttggcg
      781 ttcgactacc ccccgaacca ggtgctggcc aacgtctgcg agagcctcct gcgttggaac
      841 ccggacctca ccctcagccc tggccttgcc gagaagttcg cgaacccgac acccacgacg
      901 tgggtctaca ccatccggcg gggcgtgacc ttccacgacg gttcgccgct caccgcggca
      961 gacgtcgtgg catcgctgcg caggcacctg gacccccgag tcgggtcgta ctgggccacc
     1021 gccttcgtca acgtcaggtc ggtcgttcag accggtgacc gccaggtcac cgtcacgctg
     1081 aacaagcccg actcgctgtt caaccagttc atggcggtga ccccggggac gatcgagtca
     1141 gccgcaacgc tggcgcgcgc tggcaaggcc tacggaacac cctcggtcgg cgtgaactgc
     1201 accggcccct tcagcgtctc ctcctggaag cagggagaca gcctgaccct caagaggtac
     1261 gacgggtact gggacagggc ccatgtggcg aagtcgcgct cggtcaggtt cgtcttcctc
     1321 agcgacccca tcacccgcgt caatgcgtgg actgccggtg aggtcgatgg gggttggctc
     1381 gttcccgcca acgcctacgc ccagctcaag gccagcggcg cgggaaacct ctaccacggg
     1441 gtcaacacga cagtcgtgag cgaggtcgtg acgaacacct cgggcgtcct ggcggacaag
     1501 cgggtccggc aagccctgtt gatggcgacc gaccgatccg ggctggtgaa gaccggcgag
     1561 cagggagtgg gcgaggtcgc cacctcgttg gtcagccgca acagctgggg tggtgtacca
     1621 gccgaccagc tcggacggat catcggcaag ctcccgagct accaccgcga cgtgcaggcg
     1681 gccaaggccc ttgccaaggc ggccggcgtc aacgggcagc gaatcgtgat cgcaacctcg
     1741 ccgatcttgc agtccgccga cgccgtcacc gccgcggtgg cgcaggcagc caaggacatc
     1801 ggcctccagc cgacgatcca gaccattccc ccggacaact acacggcgct cttcaccgac
     1861 ccggccgctc gcaagggtgt cgacctgatg ctgacagcct ggtacacgtc gttggccgac
     1921 cccatggact ttcttcgcag tgctgcacac cggccagttc tccaactacg gcggctggtc
     1981 caacaagggc ttcgacgcgg ccgccgatcg ggtcatcgcc acccctgttg gcgatcccaa
     2041 ccgccccgcg ctgctcgcga aggttgagca gatcgcgatg gacgagctcc cgtggctccc
     2101 gatgtacacc cttccgacca gcgtctggct cggtcagagg atcacgggcg tcaaaccctc
     2161 catcaacttc ctctactacc cctgggccgc ttcgatcgga ggcaagtgat ggaccttcac
     2221 cacctcacgg cgacccagtc gctcaagctc ttcgccctgg gcgagctgtc gcccgtcgag
     2281 ctcctcgacg cgtgcgtccg tcgcacagag caggtggagc ccacggtcaa cgcgctgacc
     2341 gaggagctcc tgtacgacgc gtatgttgcg gcgcgcgagg cagagcgtcg gtatgccggc
     2401 caaggccccg ctccccggcc gctcgaggga attccgttgg tgctcaagga ggagcacgcg
     2461 atcgccggca ggaccttgga ggagggatcc ctgttgctga ggggccgcgt cgccgaggtg
     2521 acccatcccg tggtggagcg tgtcctggcc gccggtgccg tcgtgcacgc gcggtccgcc
     2581 actccggagt tctcctgcgc acccgtgacg cacagcaggc tgtggggggt caccagcaac
     2641 ccctggaacc cgacgatgag tcccggtggc tcgtcgggtg gggctggagc cgctcttgcg
     2701 gccggcgaga ccatgctggc aacgggttcc gacatcggag gctcgatccg gcttccggcg
     2761 tcgttctgcg gcgtggtcgg gttcaagccg ccgttcggac gggtgtcggg gctgccgccc
     2821 ttcaacgctg acaccttctg cgcggacggt ccgatgggcc gcagcgtggc cgatgtcgct
     2881 ctgctgcaga acgtcctggc cggaccccat cgggcggacc ccgtgtcact gcggcctgcg
     2941 taccggatcc ccgctgtgcc aaaggggagc gcgtcgctcc gggtcgccct gtgcgtggcg
     3001 ctcggagact acgacgtcga cccggtgatc gaggccaaca ccaggtccgc gggtgaggcc
     3061 ctccgctcgg tgggcgtgac cgtggacgag gtgaccctcc cctggaccag acagcagatc
     3121 gccgacgccg cgtgggctca ctacggcgca gtgctgggcg cggcgatcgg caccgtggtc
     3181 ggagatcacg cggacgacct gatgccgtac acgctcgact tcgcccaacg cagcgccacg
     3241 gccgcgtcct acgcggaagg gctcctggcc gaggcagcga tctacgagcc gctcggcgag
     3301 ctcctggaca acttcgacgc cctgctctgt ccgacggtcg cttcgacggg gttcccggca
     3361 gacgcgggcg cgcagggggc ctacccctgg acggaggcga tgatgaccgt cccgttcaac
     3421 atcgccggcc gccttcctgt cctggccgtg ccctcgggaa tcgcacccaa cgggataccc
     3481 accggggtgc agctcgtcgg taagccctac gacgacgcga ccgtgttccg gctgggagcg
     3541 gccctcgagg aggcgctcgc actgtggacc tcgccagact ggtggccgac gctgtgatgc
     3601 ccaggatcgt gcgcgtgctg cggagcctgg ccgcgatggt gacgaccctc ttcgccacct
     3661 ccctgctcgt gttctcctcg ctgcgcctgg cgcccggagg gccgcttcag ttcttgggcc
     3721 agggtcgaag cccgtcgccc gaagccctcg cgttggcgaa ggaggagtac ggcctcgacc
     3781 gccccttcct ttcgcagtac ctgcactggg tcagcggcgt ggtccacggc gacctgggga
     3841 agtccttcca gttccgcagt gacgtgagcg cgctcctcgc ggtacgcgtc gccccgacgc
     3901 tcaccttgat caccatggcc gccctgctga tcacggtggt cggagtgatg gcaggggtcg
     3961 tcggtgccct caacgccggc cgcctcgccg acaagacggt cctcgtcctg gtgacagccc
     4021 tggccgccgt gccacccttc gtcgcagcga tcatgctgat ctcggtcttc tccgtggggc
     4081 tcggctggtt cccgacgttc ggccctggcg atggcctgct cgaccgtctg caccatctcg
     4141 ccctaccttc cgtcgccctc gccctgacct tcgtcgcgtt gctggggcgg gtcacgcgct
     4201 cggcgatgct cgacgagctc ggcagggaac acgtggaggt cgccctgagc cgagggatcc
     4261 ccactcggac ggtcatccgc cgccacgtgc tgcgcaacgc gttgggcccg atcacgacga
     4321 tctccggggt ggtcgttgca ggtctgctgg tgagcagcgc cgtcgtcgag tcggcattcg
     4381 gtctcaacgg gctcggctcg ctgctcgtgc agtccgtgga caagcgcgac ttccctgtcg
     4441 tgcaggccat cgtgctcacc gtcgtggtga ccttcgtggt gtgcaacgtc cttgtcgatc
     4501 tgctgcagac ggtcctcgac ccgcgcactc tggcgggaac ggcagcgcga tgaccctctc
     4561 gaccgtctcc cttccgccga cctgggtccg gctgcgcctg aggtcgctcg ctggaggccg
     4621 gttggcctcg gcatccggcc tggtgctgac gctgatggtc gccgtggctg cgttggcgcc
     4681 cgtgctggca ccgcacgacc cgaacacgac ggacctcggc aacgccctga gcggtcccac
     4741 cacggcgcac tggctgggca ctgaccaggt gggccgggac accctctcca gactgatgct
     4801 cggcacccga accagcctgg tcgggccact cgccgtcgtg gtcatcgcga gccttctcgg
     4861 cgtggccgtg ggactcctcg cgggatggcg cggaggctgg gtcgatgcag tgatcagcag
     4921 gctgttggag atcgggttcg cgttccccgg cctgttgctc gcgatcctgg ccgtgtcctt
     4981 attcggcaag gggctgttcg cacccgtcgt cgccatgtcc gtggcctaca ccccattcat
     5041 ggcacgccag gtgcggggat tggtgcagac catcaagact cgccccttcg tctcggccta
     5101 caccgtgcag gggtttggcc cggtcagcat cgccgttcgc aggatcctgc cgaacatcgc
     5161 ccccctgctg ctggcgcagg ccaccgtcat gttcggctac gcgctgctcg acctcgcggc
     5221 gctgtccttc ctgggcctcg gcgcccaacc tccgacctcg gactggggcg ccatgatcaa
     5281 cgacgggcgg ggagccgtac ttctcggaca accactgtcg gcgcttgcac cctcgatcgc
     5341 cgtggtggtg gccgttgtcg cgttcaacgt cgtcggggag cagctgggtg accggatctc
     5401 gaggagggac ctgtgagccc cgtgagcgac cagctcctgt cgatagaaga cctgtggctt
     5461 cgccttccgc acgtcgcaca gcgggcggtg atcagtggcc tcggtctagg ggtcggccgc
     5521 ggtgagcttg tcggtctggt gggtgagtcg ggatcaggga agtcgctgac cgctcgagca
     5581 gtcctgggtc tcctgccggc cggtgctcgc gcgcaggggc gtgtccttgt tgagggactg
     5641 gatgtcctga gctgtgaccg gagggcgttg cgcggcttgc gggcctcgac agtgtccatg
     5701 gtcttccagg acccgcgagc tggggtgaac ccggtgcgtc gaatcgggga cttcctgacc
     5761 gaggcgacca gggcgagcgg ccgccacacc cgcgccaccg ccaccgcgcg cgccatcgag
     5821 ctcctcgatg cggtgggact gcccgatccg gcgctgcacc tgactcaata cccccaccag
     5881 ctgtccggag gcatgctgca gcgggtcatg atcgcgggcg ccttgatggg cgaaccgcgg
     5941 ctgctgctct gcgacgagcc gaccaccgcc ctcgacgtca ccacgcaggc tgagatcgtg
     6001 gcggtcctcc agcggctcca gcgtgagcag ggcctgggga tgctgttcat cacccatgac
     6061 ctcgacctcg cagcagcaat ctgcgaccgg gtctatgtca tgtatgcggg gcacatcgtg
     6121 gaggagggcc cagcgaaggt gctcttttcg gctccccggc atccctacac cgcgggtctc
     6181 ctgtcctcga agcctcggct gggggacgag gaccgcccgc tcgactgcat cccgggttcg
     6241 cctgcgagcc tcctcgagag tgcccttggg gcgcacgccg acaacctgag gggggtctcg
     6301 tgaacaccca gcctctgctc gaggtcgtcg acctccacaa gacctaccga gtgcgtggcg
     6361 ggacggttga tgccgtggcc ggggtcacct tcgacctgcg agcggggcag acgctcggca
     6421 tcgtcggcga gtcggggtcc ggcaagtcga ccgtggctcg catgctggtc ggactcgagc
     6481 aaccggacgc ggggcggatc gtcgtgtgcg gtcgcgcgac ggataggccc tcccatggcc
     6541 gcgccgagcg gctcgcccgc gcacgttcga ttcagatcgt cttccaggac ccctatctct
     6601 ccctcgaccc acggctgccg gtcggcgctg cgatcgagtc ggccttgggc ctgcacacgc
     6661 agctgtcgcc ccccgaccgg cgacagcgcg tcatagacct gctggtccag gtggggctgg
     6721 gcgaaggtgc tgccccggca ctaccccgtc ggctgtccgg cggagagcgg cagcgcgtcg
     6781 ccatcgcccg cgccctggcc gtgcggccct ccgtgctggt gctcgacgag gcagtctcag
     6841 ccctggatgt ctcggtgcag gcgcaggtgc tcaacctcct cgccgacatc cgccgagaga
     6901 cgggcgtcgc cctggtcttc atcagtcatg acctcgcggt cgtgcgacac gtgtgcgacc
     6961 agaccctcgt gatgcaccgc ggtcaggtcg tggagcgcgg tgccactcaa ggactgctcg
     7021 actcgccgca gcacccgtac acccagctgc tgcgggacgc ggttcctcgg cccgggtggt
     7081 ctcccgagga ggtcgtccga gccaaggcgc gtctcgggga tgagtcgacg gggcgtgcac
     7141 cggcaagcgc gaagccctcg tcgctgtctc gcatctgaga cggtatgccg cccgcgcgag
     7201 gttcgcgggc ggcatacctc ggctccaatg gaggcatgac ccagaccacc tccacccacg
     7261 cagtcaccgt cggcaccggc gcggtgtcct tcgacgacgt cgtggcggtg gcgcggtacg
     7321 acgcccgcgt ggtcatcgcc gaggagtcgc tcgccgaggt gcgtcggtcc cgcgccgtca
     7381 tcgacgccct ggccgacgac gtgatcccgc actatggcgt ctcgaccggc ttcggcgccc
     7441 tcgccacccg gcacatcccc gtggagcttc gggcccagct gcagcgctcg ctcgtgcgct
     7501 cgcacgcggc aggctccggg ccggcggtgg agcgagaggt cgttcgcgcc ctgatgttgc
     7561 tgcgcatctc caccctcgcc accgggcgca ccgggatccg cgaggaaacc ttgacgacgt
     7621 acgtggccat gctcaacgcc ggcatcacgc ccgtcgtgca cgagtacggc tcgctgggct
     7681 gctcgggcga cctggccccg ctgtcgcact gcgcgctggc cttgatgggc gagggcgttg
     7741 tccgcgacgc gaacggtgag cggatgccga cggcgcaggc cttcaccgcg actggcatcg
     7801 cgccggtcga gctccacgag aaggagggcc tggccctcat caacggcacc gacggcatgc
     7861 tgggcatgct catcctggcc atcaccgacc tgcgtcagct gctcaccgtc gccgacatca
     7921 cggccgcgat gagcgtcgag ggtcagctgg ggacggacga cgtctttgcc gccgacctgc
     7981 atgccctcag gccccaaccg ggccaggcgc gctccgccga gaacctgcga aggatcatgc
     8041 gggacagcgg cattcgcgag agccatcgtg acccgcaggc gtgcacgcgc gtccaggacg
     8101 cctactccct gcgttgctcg cctcaggtgg cgggcgcggt gcgtgacacc gtcgagtatg
     8161 ccgccacggt ggctggcttc gagctccgtt ccgccgtcga caacccggtg gtgaccctcg
     8221 atggacgcct cgagtccaac ggcaacttcc acggcgcccc ggtggcctac gtgctggact
     8281 tcctggcgat cgtcgcagcc gacctcgcct cgatcagcga gcgacgcacc gaccggttcc
     8341 tcgatgtcgc gcgcaaccac gggctcaacg ccttcctcgc cgacgaccct ggtgtcgaca
     8401 gcgggcacat gatcgcccag tacacccagg ccgccatcgt ctccgagctg aagcgcctgg
     8461 cgaacccggc gtcggtggac tcgatcccct ccagcgccat gcaggaggac cacgtctcga
     8521 tgggctggtc cgccgcccgc aagctgcgtc ggtccgtcga cggggtgacc cgggtcctcg
     8581 cggtcgagct gctgaccgcg gccagggcgc tggaccttcg ggccccgctc gagcccgccc
     8641 cggcgaccgc tgcggtggtc cgcgccctgc gcgaagccgg cgcccccgga cccggcacgg
     8701 accgcttcct ggcccccgag atcgagaccg cggtgcagct cgtcgccagt ggcggcgtcg
     8761 ttgccgcggc cgaggccgtc accggccccc tcaactgaac cacccggcat acccctgagc
     8821 ccatcaacac ctgagcccat caacagacgg cactgaagga gaacgacatg gaaggcgccc
     8881 gcccggtccg cgctccccgc ggatcccagc tcacggctca acactggggc gctgaggccc
     8941 cgctgcggat gcttatgaac aacctcgacc cggagaacgc cgagcgtccc gacgacctcg
     9001 tggtctacgg cggcaccggt cgggcggccc gcgactggaa gtcgttcgac gcgatggtgc
     9061 gcaccctgac cacgctcaag caggacgaga ccatgctcgt tcagagcggt cggccggtgg
     9121 gtgtcatgca aacgcacgag tgggcgcccc gcgtgctcat cgccaactcc aacctcgtcg
     9181 gggactgggc cacctggccg gagttccgcc ggctcgagca gctggggctg acgatgtacg
     9241 gccagatgac cgccggctcg tggatctata tcggcaccca gggcatcgtg cagggcacct
     9301 acgagacatt cgccgccatc gcggagaaga agttcggcgg cacactggcc ggcaccct
//
LOCUS       DASYFY010000264         4321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1753522, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000264 DASYFY010000000
VERSION     DASYFY010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4321
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1753522"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1252
                     /gene="cobA"
                     /locus_tag="VGN19_05330"
     CDS             <1..1252
                     /gene="cobA"
                     /locus_tag="VGN19_05330"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019137015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEV7195341.1"
                     /translation="TLDLAGRRVVVVGGGPVAARRVAGLLQAGAVVEVIAPWVCEDLA
                     NRAESDEIRWHDRDYVAGDLLEPVPAWLVHTATGSVEVDSQVAREAQAAHIWCIRADD
                     AEASSAWTPAVARGTDGTLAEGLTVAVTAGGDPRRASAVRDAVLAALDAGTLPIRRVR
                     PVRSAGASSSPVGRVALVGGGPGADDLITVRGRALLAAADVVVADRLGPRGLLATLAA
                     EVEVVDVGKTPGNHPVSQHRINELLVHHARQGKNVVRLKGGDPFVLGRGGEEALYCVE
                     HGIGVEVVPGVTSAVSVPAAAGIPVTHRGITASFVVASAHEGASSVLRATADAAPDAT
                     LVLLMGVTALAETAAALIGAGRAADTPVALIERGWTPEQRTTITTLERAAADAAAAGV
                     RAPAVVVVGNVVAVRNRLGDLAAR"
     gene            1262..1966
                     /locus_tag="VGN19_05335"
     CDS             1262..1966
                     /locus_tag="VGN19_05335"
                     /inference="COORDINATES: protein motif:HMM:NF014016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HEV7195342.1"
                     /translation="MSRARDIVLLAHGSPDPRHAAGVEELAAHVRARTSDRAVHTAYL
                     DHHPPTPRDAATALSGPAVVVPVLLTRAYHAAVDVPSAVAEMTRGSSVDVGLADPLGP
                     HHLLLDAAEELLAAEGITASPTTAVILYAAGSSDSAAVLTVAETIAAAPRHGWGPWAV
                     AALDGGSSLRDVLRGLPDEVERTVAVSFMVAEGILRDRMAQYCGRAGVTMVQGALART
                     KAVAALVLERADSLPA"
     gene            1963..2772
                     /locus_tag="VGN19_05340"
     CDS             1963..2772
                     /locus_tag="VGN19_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEV7195343.1"
                     /translation="MTSRSSSPHPHLRVDVDGAVLTLTLTNPARRNAQTPSLWEALES
                     VAVGLDPSVRVVVLRAEGPAFSAGLDRRMLSPTPVEGEPNLLAVATDGPAELEDLIAG
                     FQRGFTAWSAVSAIVVAAVQGAAVGAGFQLALAADLRVVADDVQFAMRETSLGLVPDL
                     GGLGPLVACVGPSRALEICATGRAVGAAEAVGTGLANVAVPVDQLDATVDDLVAALLA
                     TPQAALRELKPLVRSAAVEDQQTQTGLERAAQARLLRGLAASLGSGRGSDA"
     gene            2919..>4321
                     /locus_tag="VGN19_05345"
     CDS             2919..>4321
                     /locus_tag="VGN19_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEV7195344.1"
                     /translation="MAMRSLARDDSVKDRKLAPGTARRVVGYGRPFRREILLFLVLVI
                     IDSALVVATPLLLKQLIDHGITPHNRGVVIELSLLVAALAMGDGLLTLVERWYSARIG
                     EGLIYSLRTQVFSHVLRQPVAFFTRAQTGALVSRLNSDVLGAQQAFTSVLSSVVSNVV
                     SLALIIATMASLSWQLTLASLALVPFFLLPARYMGRRLAGMTHAQMGLNADMGTRMTE
                     RFNVAGALLVKVFGDVRREDEEYADRAAGVRDMGVRIAMNRSVFFVALTLVASLATAM
                     IYGFGGLMAVSGQLTIGTLLALTALLARLYGPLTSLSNVRVDVMTALVSFERVFEVLD
                     LKPLITEREGARSLPQGPVSVQVENVAFRYPSADEVSLASLESTASGDRKGGGVVLRD
                     ISFTVAPGELVALVGPSGAGKTTITNLVARLYDPSAGNVLINGMDLRDATLESVHRIV
                     GVVTQEAHLFHDTIRANL"
BASE COUNT          563 a         1497 c         1563 g          698 t
ORIGIN      
        1 gacgctcgac ctggccggac gtcgggtcgt cgtggtgggt ggcggcccgg tggccgcgcg
       61 tcgggtggct gggctcctgc aggccggggc cgtggtggag gtcatcgcgc cgtgggtctg
      121 tgaagatctc gcgaaccggg ccgagagtga cgagatccgt tggcacgaca gggactacgt
      181 cgcgggggac cttctcgaac cagtaccggc atggctggtc cacacggcca ccggctcggt
      241 ggaggtcgac tcccaggtcg cccgcgaggc tcaggcggcg cacatctggt gcatccgggc
      301 cgacgacgcc gaagcgtcct ccgcctggac accggccgtg gcccgcggga cggacggcac
      361 gctcgcagaa ggcctcaccg tggcggtcac tgccggcggc gacccgcggc gtgccagtgc
      421 ggtccgggac gccgtgttgg cggcactgga tgccggcacc cttcccatcc ggcgggtccg
      481 gcccgtccgg tccgccgggg cgagctccag cccagtcggt cgcgtggcgc tggtgggcgg
      541 tggccccgga gccgacgact tgatcacggt ccggggtcgg gcgttgctcg cagccgccga
      601 cgtggtggtg gccgaccggc tcggtccccg tggtctgctt gccaccctgg cggccgaggt
      661 cgaggtggtc gacgtgggca agactcccgg caaccatcct gtctcccagc accgcatcaa
      721 cgagcttctg gtgcaccacg cccggcaagg caagaacgtc gtccgcctca agggcggcga
      781 cccgttcgtc ctgggtcgtg gtggggagga ggcgctctac tgcgtcgagc acgggatcgg
      841 cgtcgaggtc gtgcccggcg tgacctcggc cgtctccgtg ccggctgccg cggggatccc
      901 ggtcacccac cgtggcatca ccgcgtcgtt cgtggtcgcc tccgcgcacg aaggggcgag
      961 ctcggtgctg cgggccactg ccgatgccgc tccggatgcg accctggtgc tgctcatggg
     1021 agtcacggcc cttgccgaga ccgctgccgc cctgatcggg gccggtcggg ccgcagacac
     1081 ccccgtcgcc ctgatcgaac gcgggtggac gccagagcag cggaccacca tcaccaccct
     1141 ggaacgcgcc gccgccgatg cggctgcggc gggtgtccgc gcacctgccg tcgtggtcgt
     1201 cggaaatgtc gtcgctgtgc gtaaccgtct gggcgacctg gcggcgaggt agcgtcgcag
     1261 ggtgagccga gcccgcgaca tcgtccttct tgcgcacggg tcgccagacc ctcgtcacgc
     1321 cgcaggcgtg gaggagctgg cggcacacgt gcgcgcccgc acgtcagacc gtgccgtgca
     1381 cacggcatac ctcgaccatc accccccgac ccccagggac gctgcgaccg ccctctcggg
     1441 gccggccgtg gtcgtgccgg tgctgttgac ccgcgcgtac cacgcggcag tcgacgtacc
     1501 gagtgcggtg gccgagatga cgcggggttc aagcgtggac gtgggcctgg ccgatccgct
     1561 gggccctcat cacctgctcc tggatgcggc cgaggagctg ctggccgccg aggggatcac
     1621 ggcttcgccc accaccgccg tcatcctgta tgccgccggc tcgagcgaca gtgccgccgt
     1681 gctcacggtc gcggagacca tcgcggccgc gccacgtcac ggctggggac catgggccgt
     1741 cgcggcgctc gatggtgggt cttcgttgcg ggacgtcctg cgcgggctgc cggacgaggt
     1801 cgagcggacc gtggccgtgt cgttcatggt cgccgagggc atcctgcgcg atcggatggc
     1861 ccagtactgc gggcgggcgg gggtcaccat ggtgcaagga gccctggcgc gtaccaaggc
     1921 ggtggcggca ctggtcctcg agcgggccga tagcctcccg gcgtgacttc acgttcaagc
     1981 agcccccatc cacaccttcg ggtcgacgtt gacggtgcgg tcctcacgct gacgttgacg
     2041 aacccggcac gccgcaacgc gcagacgcca agcctgtggg aggcgctgga gtcagtggcc
     2101 gtgggtctgg atccgtctgt ccgcgtggtc gtgctgcgag cggagggacc agctttctcg
     2161 gccggactcg accgcaggat gctctcgccg accccggtcg agggcgagcc gaacctgctg
     2221 gcggtcgcga cggacggccc ggccgaactc gaggacctca tcgcaggttt ccagcggggc
     2281 ttcacggcgt ggtcggcggt atcggcaatc gtcgtggcgg ccgtgcaggg ggcggccgtg
     2341 ggagcgggat tccagctcgc cctggccgcg gacctgcggg tcgtcgctga cgacgtgcag
     2401 ttcgcgatgc gcgagacgtc gttgggcctg gtgcccgacc ttggtggtct cgggcccctc
     2461 gtggcctgcg tgggtccgtc gcgtgccctc gagatctgtg ccacgggtcg ggcagtcggg
     2521 gccgcagagg ccgtcggcac cggcctggcc aacgtcgccg tgccggtcga ccagctcgac
     2581 gccaccgtcg acgatctcgt cgcggcgctg ctggcgacac cccaggccgc gttgcgcgag
     2641 ctcaagccgc tggttcgctc ggccgccgta gaggaccagc agacccagac cgggctggaa
     2701 cgggcagccc aggcacggct gttgcgaggt ctggcggcct cgctcgggtc cggccgcggg
     2761 tccgacgcct gacggacgct ggacggacgt ctgcctcaag cctcaatgct gaggtgttcg
     2821 ctgtcagacc cgcggagcac tatggggaat gcgggcgccc gtcaggggcg ttccaccgct
     2881 gaaccccgag gaggagacct gtgagcacgt ccggctggat ggccatgcgt tcgcttgccc
     2941 gagacgactc ggtcaaggac cgaaagctgg ctccgggcac ggcacgccgg gtcgtcgggt
     3001 acgggcggcc cttccgccgg gagatcctgc tcttcctcgt cctggtcatc atcgactccg
     3061 cgctggtcgt cgcgacgccg ctgttgctca agcagctcat cgaccacggc atcacgccgc
     3121 acaaccgcgg cgtggtcatc gagctgtcac ttctggtcgc cgcactggcc atgggcgacg
     3181 ggttgctcac cctggtcgag cgctggtact ccgcccggat cggcgagggg ctgatctact
     3241 cgctgcgcac ccaggtcttc tcccacgtgc tgcgccagcc cgtcgccttc ttcacccgcg
     3301 cgcagaccgg ggcgctggtg agccggctca acagcgatgt gctcggcgcc cagcaggctt
     3361 tcacgtcggt gctgtccagc gtcgtcagca acgtcgtctc cttggcgctc atcatcgcca
     3421 cgatggcctc gctgtcctgg cagctcaccc tcgcgtccct ggccctggtg ccgttcttcc
     3481 tcctgccagc gcgttacatg ggacgccggc tggccgggat gacccatgcc cagatgggcc
     3541 tcaacgccga catgggcacc cgcatgaccg agcggttcaa cgtggccggg gcattgctcg
     3601 tcaaggtgtt cggggacgtg cgccgcgaag acgaggagta tgccgaccga gccgccggag
     3661 tgcgggacat gggcgtgcgg atcgccatga accgcagcgt gttcttcgtg gcgctgacgt
     3721 tggtggcgtc gctcgcgacg gccatgatct acgggttcgg gggtctcatg gcggtcagtg
     3781 gccagctgac catcgggacc ctgctggcac tcaccgcgtt gctggcccgc ctctatggac
     3841 cgctgacctc gctgtccaac gtgcgtgtcg acgtcatgac ggcgctggtg tcgttcgagc
     3901 gagtcttcga ggtcctcgac ctcaagccgc tgatcaccga gcgcgagggg gctcgcagcc
     3961 tgccgcaagg gccggtcagt gtgcaggtcg agaacgtggc gttccggtac ccgtccgccg
     4021 acgaggtgtc gctggcctcg ctggagagca cggcctcggg tgaccgcaag ggtgggggag
     4081 tggtcctgcg ggacatctcg ttcaccgtcg ccccgggtga gctcgtcgcg ctcgtcgggc
     4141 ccagtggtgc cggcaagacg acgatcacca acctggtggc caggctctac gacccctcgg
     4201 ccggcaacgt cctgatcaac gggatggatc tgcgcgacgc gacgctggag tccgtgcacc
     4261 gaatcgtcgg ggtcgtgacc caggaggccc acctgttcca cgacaccatc cgcgccaacc
     4321 t
//
LOCUS       DASYFY010000265        15596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_71329, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000265 DASYFY010000000
VERSION     DASYFY010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 15596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15596
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71329"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VGN19_05350"
     CDS             <1..410
                     /locus_tag="VGN19_05350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195345.1"
                     /translation="FALGAPTTLLALSACSTAASSAQNTSPPTSSTCVGLPPSDVPAL
                     NGALTQADTGDYCAQPGTSVLVVLNAATPAPADRWSDPGVAGPAGGATKVSAPLTALR
                     GATVAAYRFSRPGNYHLTAAAPGRSWHATITVR"
     gene            489..1640
                     /locus_tag="VGN19_05355"
     CDS             489..1640
                     /locus_tag="VGN19_05355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195346.1"
                     /translation="MTTSAGLVPLRSRRVLCYQWLGAKLYILGLVFAVAALAGVGARN
                     RSSDLITWVMYRFAHWDSNLYAAIAIRGYPRVAYPHSYFSFLPGFPWAMGYLGAALGI
                     EVRWAALIIVTISSLACVFLLRQVALELTGSARAAQWGVLAFLVSPMAVFFTIDYAEA
                     PFLALAMAAWLAGRRGAWVWAGILAGLASTLRITGPLVAAALVVMFLTQVSVRGRSWW
                     NPRVLALGLGPVFVLGYAVWLHRQTGSWSTWTSAQRLGFGRATAWPWVGALDAAHKIG
                     TAGTWHLEAVRLLDLLAALGSWVAAACLLRRRWWAEATLAGLCAISLSCSTILDSSPR
                     YLSSVFPLYVLLGLWLARSNIWGRALYLTASVALGSFAELGWGMQWWIA"
     gene            1613..2857
                     /locus_tag="VGN19_05360"
     CDS             1613..2857
                     /locus_tag="VGN19_05360"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195347.1"
                     /translation="MGHAVVDRLGGDPRPQAAPAYRDPNVMRWVLGYLSSLIGDQIWF
                     VALSWSAVQAGGPAQVGLVLAAGALPRSVLLLFGGALADRWGIRRVALASDVTRTALL
                     AAAATLALTVPLGVGWLIALAVAFGVVDALYLPAAAAMPQQLAPREELTRVQGLRATA
                     QRLATTLGAPLGGLAVAGAGAARAFALAASTTALSVGALAFTRLRRVQPSIREPILRS
                     VRAGLAYTTRHPVLRPLLIMATLTELGFGGAVNAGLPILSHARGWGANGVGFLLGAFG
                     VGAAVSAIAVVLTRRIPHVGRLFTPLVIVTAGALAGIGTTRSLPVAVACAAFVGLASG
                     VSGTLYGSLILHESAPEMVARVASLSMLASLGLAPVALAMAGAAAAAYGAPGPFLLGA
                     AIVLTGAVPPLVAASLRGAELA"
     gene            complement(3012..3887)
                     /locus_tag="VGN19_05365"
     CDS             complement(3012..3887)
                     /locus_tag="VGN19_05365"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195348.1"
                     /translation="MAERAASSTAVLVCQGRAAADGRYAVGRFSDAIAQDLLDPSELM
                     IVDAVRAEQVPTRARDRVAYEMVRRVAVTMVPRTIAIDDAIRDRGAEQLVILGAGLDA
                     RAWRMPELAGVTVFEVDHPASLLDKQRRIGRRAPTAEKLVSVSVDLARQRLGPTLEAA
                     GFDRRIGTTWVWEGVVPYLTARQVQATVAQLGELSAPGSRLIVNYQGKSLPVTVMRAV
                     MRLVLRVSRQPDPMAGEPWRSLWRPETMRKMLSHNGFDTFWDKTLLGLAAGLALPWDN
                     NGSLANGRVALAVRR"
     gene            complement(3905..4354)
                     /locus_tag="VGN19_05370"
     CDS             complement(3905..4354)
                     /locus_tag="VGN19_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195349.1"
                     /translation="MPTKSATSVSDGFSAEERAAMKKRAAELRAEGKKGAKAADGLEA
                     LLAAIAAMEPQDRALAERVHVTVTATAPELSPKTWYGMPAYANEDGKVVLFYQDSGKF
                     NYRYSTLGFQDQANLDDGDLWPVSYALKQWSPTVEKKVVELVKAAIS"
     gene            complement(4510..4950)
                     /locus_tag="VGN19_05375"
     CDS             complement(4510..4950)
                     /locus_tag="VGN19_05375"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HEV7195350.1"
                     /translation="MPATLAERLTHAIIATHGKLYERTDGRVGHNLLGVPCLLLRTVG
                     AKSGVARTNSLTYALDGAAYVVVASMGGAPKNPGWYHNLRANPQVVAQVGTNRVPVAA
                     RVVMPGDADYARLWQLVNDNNKQRYAAYQRLTSRPIPVVVLDPS"
     gene            complement(4992..5198)
                     /locus_tag="VGN19_05380"
     CDS             complement(4992..5198)
                     /locus_tag="VGN19_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195351.1"
                     /translation="MSDRRQVLLRVDPAVHDALMRWANDEFRSVNAHIEMLLRRALDD
                     AGRMPKQASPLPKRGRPKAAQTDE"
     gene            complement(5195..6100)
                     /locus_tag="VGN19_05385"
     CDS             complement(5195..6100)
                     /locus_tag="VGN19_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEV7195352.1"
                     /translation="MATVDTTDTVGPVGHQGARVNITERPALVISGWFGVLVLAAAGY
                     GIEYTGKNHNGLLWLPLLVFALVVTSLVIVPPGQTSVLQFFGSYVGTVRTPGFWWILP
                     LIRRRNVSVRVRNFETNHLKVNDADGNPVEIAAIVVWQVADTARSTYAVDNYRDFVSV
                     QAESALRHVATSHPYDDHTETGTSLRGSVDIVSGQLAVEVAERVVIAGIEVVEVRISH
                     LAYAQEIAQAMLRRQQANAVVAARSRIVEGAVGMVELALNRLAENGVVELDEERKATM
                     VSNLMVVLCGDQPATPVVNAGSLYT"
     gene            complement(6175..6864)
                     /locus_tag="VGN19_05390"
     CDS             complement(6175..6864)
                     /locus_tag="VGN19_05390"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7195353.1"
                     /translation="MAHFLLLHGACHGGWCWDQVTAILRSAGHQTTAPDFPCGDVSAG
                     LNESTAAAVASLPDDAGDLVVVGHSLGALVAPLVAHRVPVRRMVMLAGIVGAPQASLA
                     SLAQEDAERDLPLGDADLEFDAEGRFRFSQAGARRALYHDCSPVAAVAATAQLRFQRS
                     MWSEVADFDAWPNVETVSITCADDRVVNPDWSNKIARERLRVEPIQLPGGHSPFLARP
                     AALAALLTADL"
     gene            complement(6896..7477)
                     /locus_tag="VGN19_05395"
     CDS             complement(6896..7477)
                     /locus_tag="VGN19_05395"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HEV7195354.1"
                     /translation="MKPYFETHQLGLVWVAVAVVAAVIEVVGGRRRRTEGTQRDRGSL
                     LVLRICVAPGVLLMGLAPRLVPNADIRPPLVSLTVGIVLFVCGEALRVWSKVALGRYF
                     TYSVHTSTDQPVIAAGPYRVLRHPSYTGIMLMVIGLGAVWGNWAGLVAVTVLTMVGLS
                     YRIRVEERALLADLGDRYEAFAAHRKRLIPYVW"
     gene            complement(7601..8281)
                     /locus_tag="VGN19_05400"
     CDS             complement(7601..8281)
                     /locus_tag="VGN19_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195355.1"
                     /translation="MALTSWNRPLTFTANNVTLSGIDFHGMPKLSGSNITLTDCRFTS
                     FAFYGPGPLTIRNCDGTGNLNVDAYYRDISGIVLDGVNLDVGAHDGFDFFSSANGRIS
                     NVTVVNSIVHGMDFPPDSKAHGDAMQVRGITHLRVLNTVLDDGPYQHQKNSAFYLENV
                     HGGLNDILIANSWLSGGGYTFYSNFVNPGVARNVHIDLIGHWGPRRAKGGWTFVNVTG
                     PSGEPISP"
     gene            8692..9384
                     /locus_tag="VGN19_05405"
     CDS             8692..9384
                     /locus_tag="VGN19_05405"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEV7195356.1"
                     /translation="MRTGRGFSDVASRHTLLRSGEPRFRRTTTPRAGVPAALAVGYLI
                     LTVGVLTNGPFVRLDLFVDSQVPGRDDGPQFLHDLAMGVITLANPPYTTVALLMVMLG
                     WALLARSWWPVLASAPPVLVMTSTVLLFKWLVGRAGPPGSGPAGSFGAFPSGHTATAL
                     VCAATLAALVGFVRPRWASVARLAAAAWALLVAWSVVWVHYHFLNDVLGSFLLGSLVL
                     WACYRWPWSLRR"
     gene            9481..9846
                     /locus_tag="VGN19_05410"
     CDS             9481..9846
                     /locus_tag="VGN19_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195357.1"
                     /translation="MDMRLELVPLPTNDVDRSKKFYVDQLGFNLDHDVEPGNGMRVVQ
                     LTPPGSACSIAIGVGIGDPDAPRVQNLHLVVADVEQARTRLVGNGIEVSPVNDLGGVK
                     YAYFSDPDGNSWALQELLR"
     gene            9887..10507
                     /locus_tag="VGN19_05415"
     CDS             9887..10507
                     /locus_tag="VGN19_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018769997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEV7195358.1"
                     /translation="MSWSVWFTLVFAAVLISLTPGAGAINTMANSIGAGWARSIWGIL
                     GQQLALLVHVAVVAAGVGVLVAESPLLFNIIRFAGAAYLVFLGVRQLRARPKVVDDDA
                     SADLARPWAMFRQGVLVNLTNPKAVVFFLAFTPQFIRPGRPLATQYAVLAATVVVVDV
                     LVMWFVFAVAARGLRRLTASASGQRRLNRIFGGLFVGVGALLAAVH"
     gene            10906..11109
                     /locus_tag="VGN19_05420"
     CDS             10906..11109
                     /locus_tag="VGN19_05420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195359.1"
                     /translation="MVIAWMSGDVSDAVDKDRAPSVSSDKSRALKRVFPSSWRGTGAA
                     NDLLPEPRGGGVELPLHEASVEA"
     gene            complement(11137..12171)
                     /locus_tag="VGN19_05425"
     CDS             complement(11137..12171)
                     /locus_tag="VGN19_05425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEV7195360.1"
                     /translation="MVASLLSTWIGLTWWSLGAAIAASLVLGKVLRLGDQALETPISA
                     MLILGVTNHGVAGEVRILTTLIGAGVGVAFNLVYPPALPTTHAKQGLQRVANTAAFPL
                     DAAADDLVRGPVTAAQVETWLDRVRAVTNEVAIATQRIDTLKDSRRLNARALGTADVG
                     PILGTGLETLEHCLLDIRALFTVIAAEIPAAADREDDPYGEELRKAFAVVLHDTADCL
                     RAFGSLVVAETEDREENTRQALAETLDILRETQAILTELVMVDAQHNPSSWLLRGSIL
                     AAVEQVLTRLNLENRARLHDEWKAEQLRRPLGTLPPLIDNVLPHPDRPYPRGLQPHRL
                     LGRKGRNPTG"
     gene            12568..13440
                     /locus_tag="VGN19_05430"
     CDS             12568..13440
                     /locus_tag="VGN19_05430"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015884543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HEV7195361.1"
                     /translation="MKLGLHIADFTWDGGSAALPQRLSDIAVGAEQAGYDRVSVMDHL
                     WQIQHLGPPEHEMLEAYTTLGYLAAKTERVKLLTVVTAVVYREPGLLAKAVTTLDVLS
                     GGRAMLGIGAAWNEEESRGLGLFFPSTSERFERLEEALQICRQMWSADDGPYKGRHYQ
                     LERTLNSPQAVSRPHPPILIGGAGERKTLRLVAQYADACNIFDTPELPHKLQVLRDHC
                     ERLGRDYDEIEKTAQVRFDLGPGGERVEELIDHLRELADLGIEVAHGALANVSKPGTL
                     ELMAERVIPAVADL"
     gene            13593..14018
                     /locus_tag="VGN19_05435"
     CDS             13593..14018
                     /locus_tag="VGN19_05435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195362.1"
                     /translation="MTEHELVAETTRLGGRLRQVLAMLGAEFLLGMGANLVGMPSEVK
                     GGARAATLTFIGLHALLAIGILVVAFLVSRSAHEEQLAVRPTTIGAVSVAVTFIAGMG
                     TLATGNAWLSFVMAAGFLAAAGMYVAAYAEVSRLSPSAS"
     gene            complement(14052..14672)
                     /locus_tag="VGN19_05440"
     CDS             complement(14052..14672)
                     /locus_tag="VGN19_05440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195363.1"
                     /translation="MRAPLWPLTIAAAGILLAGCAASQAATTTTSMPGMSMAPGQTMP
                     GMTPSAGAPSASSKASTAAAATGPSAAAQMVCSTDIKDKVKQVLSLPTTPAAHSTFVD
                     HRFTCTYDLPMGPLKLSVQDSPSKAAAATYFTRLRPTLGSTDTLIGLGERAYGTPSGT
                     VVVLKDSQTLSVDATGLPTVFGAQKQKRTDLAYEIASDVLGCWTNG"
     gene            complement(14711..15412)
                     /locus_tag="VGN19_05445"
     CDS             complement(14711..15412)
                     /locus_tag="VGN19_05445"
                     /inference="COORDINATES: protein motif:HMM:NF033748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class F sortase"
                     /protein_id="HEV7195364.1"
                     /translation="MSTEQHGRRRRHPAAVLAVLLLAVGAALLAIGIHAQQHAPQPPA
                     SAAIPLPIATASTPPSAPGPGPGRPVTSIRGPILTAALPTRLDIPAIGVSSELMQLGL
                     NADRTVQVPPLGRDSRAGWYRYSPMPGQLGPAVLLGHVDSAQYGPGVFFKLGALRPGD
                     TVNVTRADHTIAVFRVDRVVSYSKDHFPTLEVYGNTDHAALRLITCGGRFNLSSHGYE
                     SNIVAYASLVSTHLA"
BASE COUNT         2323 a         5181 c         5407 g         2685 t
ORIGIN      
        1 ggttcgccct gggcgccccc accaccctgt tggccttgtc cgcatgctca actgccgcat
       61 cctccgctca gaacacctcc ccacccacgt cgtcgacctg tgtgggactc ccacccagtg
      121 acgtgccagc gctgaacggt gctctcaccc aagccgacac cggcgactac tgcgcccaac
      181 caggaaccag cgtcctggtc gtgctcaatg cagcaacgcc agcgccggcc gaccgatggt
      241 ccgacccagg cgtcgccggg ccggccggag gggcaacaaa ggtcagcgca ccgctgaccg
      301 cgctgcgggg cgccaccgtc gccgcgtacc gcttctccag gccaggcaac taccacctca
      361 ccgccgccgc acccggccgc tcctggcacg ccaccatcac tgtgcgctag taccgggcgt
      421 cgcgtgcggg gcgtcgacga attcagacgt cgcgcccgaa atgctccgat tgtcctaggc
      481 ttcgaacagt gacaacatcc gccggcctcg tcccactgcg ctcgcgacga gtcctgtgct
      541 accagtggct cggcgccaag ctgtacattc tcgggctggt cttcgctgtc gccgccctcg
      601 ctggtgttgg cgcgcgtaac cggtccagcg acctcattac gtgggtgatg tacaggttcg
      661 cccactggga ctccaacctg tatgccgcga tcgcgatccg gggatacccc cgggtggcct
      721 acccccacag ctacttctca ttcctgcccg gctttccctg ggcgatgggc tacctcgggg
      781 ctgccctcgg gatcgaggtt cgttgggcgg ccctgatcat cgtcacgatc tcctcactcg
      841 cttgtgtctt cctcctgcgc caggtcgcgc tcgaactcac cggatccgcg cgtgcggcgc
      901 agtggggggt ccttgcattc ctggtctcgc cgatggcggt cttcttcacc atcgactacg
      961 ccgaggcgcc gttcctcgca ttggccatgg cagcgtggct cgccggccgc cgcggggcgt
     1021 gggtgtgggc ggggatcctc gcaggcctgg catccaccct tcgcatcacc ggcccactgg
     1081 tggcggcggc gctcgtggtc atgttcttga cgcaagtctc cgttcgcgga aggtcatggt
     1141 ggaacccgcg tgtactcgcg ctcggcctgg gcccggtttt cgttctcggg tatgccgtgt
     1201 ggctgcaccg ccagaccggg agctggtcaa cgtggacctc ggcgcaacgc ctgggattcg
     1261 gacgagccac cgcctggccg tgggtgggag ccctcgacgc agcacacaag atcgggaccg
     1321 ctggcacctg gcacctggag gcggtccgac tgttagacct cttggcggcc ctgggatcat
     1381 gggtcgcggc agcgtgtttg cttcggcgcc ggtggtgggc agaggccacc ctggccgggc
     1441 tgtgcgccat ctcgctgtcg tgctcgacga tcttggactc cagcccgcgg tacctcagct
     1501 ccgtctttcc cctgtacgtg ctgttggggc tgtggctagc ccgaagcaac atctggggtc
     1561 gagcgctgta cttgaccgca tccgtggccc tcggctcgtt cgcagaactc ggatggggca
     1621 tgcagtggtg gatcgcctag ggggcgaccc aaggccgcag gccgcgccgg cctaccgaga
     1681 ccccaacgtc atgcgctggg tgctcggcta cctctcgtcc ctgatcggcg accagatctg
     1741 gttcgtcgcg ctgtcctggt cggccgtgca agcagggggg cctgcacagg tggggctcgt
     1801 cctggccgcg ggagcgcttc cgcgttcggt gctcttactg ttcggcggcg ccctggctga
     1861 tcggtggggg atccgcaggg ttgctctcgc cagcgacgtc acgcgaacgg cacttctcgc
     1921 ggcagcggcg actctggcct tgaccgttcc tctcggcgtc gggtggctga tcgcgctggc
     1981 ggttgcgttc ggggtggtcg atgccctcta cctgccggcc gcggcggcga tgccgcaaca
     2041 gctcgccccg cgagaggagc tgacccgcgt ccagggcctg cgggccacgg cgcaacggct
     2101 ggcgaccacc cttggcgccc cgctgggggg cttggcggtc gccggtgcgg gcgccgctcg
     2161 cgcctttgcc ctggcggcaa gtactaccgc cctgagcgtt ggcgcgctcg ctttcacacg
     2221 ccttcgccgt gtccagccct cgatccgcga gcccatcctc cgttcggtcc gcgccgggct
     2281 cgcctacacg acgcgtcatc cggtgctgcg ccctctgctg atcatggcga ccctgaccga
     2341 actcggcttc ggcggagccg tcaacgcagg cctgccgatc cttagccacg cgcggggctg
     2401 gggcgccaac ggagtgggct tcctgctggg ggcgttcggt gtgggcgccg cggtctcggc
     2461 tatcgcggtg gtcctgaccc gtcggatccc ccacgttggc aggctgttca cgccactggt
     2521 catcgtgacc gctggcgcgc tcgccggtat cggaaccact cgatcgctgc cggtggccgt
     2581 ggcttgcgcc gcattcgtcg gactcgcctc aggggtcagc ggcaccctgt acgggtcgct
     2641 gattctccac gagagcgcgc ccgagatggt cgctcgagtt gcgagcctgt cgatgctggc
     2701 cagtctcggg ctggcacccg tagccctggc catggcgggg gcggctgccg cggcatacgg
     2761 ggccccaggc ccattcctgc tcggcgccgc catcgtcctg acgggggcgg tgccgcccct
     2821 tgtggctgcc tcgctcaggg gcgcagagct ggcctagacc tcattcacgt ctcgccctcc
     2881 tgggtccatg ctcgctcgac agccgggcag gtgctggcgg tacaaaccca tgtgtccggt
     2941 gacacggcgt aagggccatc cttgtcccat tgtcagcgtg ccccggttct tcgcagcatt
     3001 cgcatctgtg gtcagcgtcg gacggcgagt gccacgcgcc cgttggccag tgagccgttg
     3061 ttgtcccacg gcagcgccag acctgctgcc agaccgagaa gggtcttgtc ccagaaggtg
     3121 tcaaaaccat tgtggctcaa catctttcgc atcgtctcag gccgccacaa ggatcgccac
     3181 ggctcccctg ccatggggtc gggctgtcgg gacacccgca gcacgaggcg catcacagca
     3241 cgcatgacgg tcactggcaa tgacttgccc tggtagttga cgatcagccg actgcccggt
     3301 gcggacagtt ccccgagctg tgccaccgtc gcctgcacct gccgggcagt caggtatggc
     3361 acgactccct cccacaccca ggtcgtgccg atccggcgat cgaagccggc cgcctcgagg
     3421 gtcgggccca gacgttgtcg agcaagatcg accgagaccg acacgagctt ttccgcggtc
     3481 ggggcgcggc gcccgatccg tcgttgcttg tccagcagtg aggccgggtg gtcgacctcg
     3541 aacaccgtga ccccggccag ctcgggcatg cgccacgctc gggcatcaag gcccgcgccg
     3601 aggatgacga gctgctcggc accgcgatcg cgaatggcgt catcgatggc gatggttcgc
     3661 ggcaccatgg tcaccgcgac ccgccggacc atctcatagg ccacccggtc gcgcgcccgc
     3721 gtcggcacct gctcagcgcg aacagcatcc acaatcatga gctcgctcgg gtcgagcaga
     3781 tcctgggcga tcgcgtctga gaaccggccc acggcatacc gcccgtcggc ggccgcccgg
     3841 ccctgacaga cgaggacagc cgtggagctg gcagcacgct cggccatggg acccagtctg
     3901 acgctcagga aatcgcggcc ttgaccagct cgacgacctt cttctccaca gttgggctcc
     3961 actgcttgag ggcgtacgac acgggccaaa ggtcaccgtc gtcgaggttc gcctggtcct
     4021 ggaagcccaa ggtggagtac cggtagttga acttccccga gtcctggtag aagaggacga
     4081 ccttgccatc ttcgttcgcg taggcgggca ttccgtacca ggtcttcggc gagagctcgg
     4141 gggcggtcgc ggtcaccgtc acgtgcactc gctcggcaag agcacggtcc tgcggctcca
     4201 ttgccgcgat cgcggcgagg agcgcctcga ggccgtcggc cgccttggcg cccttcttgc
     4261 cctcggcgcg cagctcggcg gcgcgcttct tcatcgcggc gcgctcttcg gcgctgaaac
     4321 cgtcggagac cgacgtggca cttttcgtag gcatgagcgg gctgtccttt cgtagcaatg
     4381 gaaggttcgg ctgcgtggtg cctcctgaga agaggctaga gccgccccct gacctgacgc
     4441 ttctccattc ctgatcggtt cggaggttcg tcaaggaggg accgccccat gcctcgacca
     4501 cgggccgcct cagctcgggt cgagcaccac cacggggatc ggacgcgacg tcaggcgctg
     4561 gtacgcggca taccgctgct tgttgttgtc gttcacgagc tgccacagtc gcgcgtagtc
     4621 cgcgtcaccg ggcatgacca cccgcgcagc cacggggacc cggttcgtgc ccacctgggc
     4681 cacaacctga ggattggcgc gcaggttgtg gtaccagccg gggttcttcg gggcgcctcc
     4741 catcgaggcg acgacgacgt aggccgcgcc gtccaaggcg taggtcaacg agttggtccg
     4801 ggcgaccccc gacttcgctc ccaccgtgcg cagcagcagg cacggcacgc caagcaagtt
     4861 gtgcccgacg cgaccgtcgg tgcgctcgta gagctttcca tgggtggcga tgatggcgtg
     4921 ggtcagccgt tcggcgagag ttgcaggcac accccgaggg tatgccgtcg gcctcggtct
     4981 gtcgtgcacg ctcattcgtc ggtctgggcg gccttgggac gcccgcgctt gggcagcggc
     5041 gacgcctgct tgggcatccg acccgcgtcg tcgagcgccc ggcgaagcag catctcgatg
     5101 tgggcgttga cgctgcggaa ctcgtcgttg gcccagcgca tgagggcgtc gtgcaccgcc
     5161 gggtcgaccc ggagcagcac ctgccgtcgg tcgctcacgt atacagggag cccgcgttga
     5221 cgacaggcgt cgcaggctgg tcgccgcaga gcacgaccat caggttgctc accatggtgg
     5281 ccttgcgttc ctcgtcgagc tcgacgacac cgttctccgc cagtctgttc agcgcaagct
     5341 cgaccatgcc gaccgcgccc tcgacgatgc ggctgcgtgc tgcgaccacg gcgttggcct
     5401 gctgccgacg cagcatcgcc tgcgcgatct cctgggcata ggccaggtgg gagatccgaa
     5461 cctcgacgac ctctatcccg gcgatgacca cgcgctccgc cacctcgacg gcgagctggc
     5521 ccgagacgat gtcgaccgac ccgcgcagcg atgtcccggt ctcggtgtgg tcgtcgtagg
     5581 ggtggctcgt cgcgacgtga cgcagcgccg actcggcctg gaccgagacg aagtcccggt
     5641 agttgtccac ggcatacgtc gaccgggccg tgtcagccac ctgccagacg acgatggcgg
     5701 cgatctcgac ggggttgccg tcggcgtcgt tgaccttgag gtggttggtc tcgaagttgc
     5761 gcacccggac gctgacgttg cgccgacgga tgagcggcaa gatccaccag aacccaggcg
     5821 tgcgaacggt gcccacgtag ctgccgaaga actggagcac tgaggtctgc cccgggggca
     5881 cgatcaccag tgaggtgacg accaaagcga agacgagcaa cggcagccac agcaggccat
     5941 tgtggttctt accggtgtac tcgatcccgt agccagctgc ggcgaggacc agcacaccga
     6001 accagccact gatgaccaag gctggccgct cggtgatgtt gacccgggct ccctggtggc
     6061 cgaccggtcc gacggtgtcc gtggtgtcga cggtagccat cgtgggctcc ttctctagaa
     6121 aagtgatatc aaatagatag cacttttccg accgccccgc tagagctccg aacgctacaa
     6181 gtcggccgtc agcagggcgg ctagtgcggc gggtcgagcg aggaaggggg agtgcccgcc
     6241 agggagctgg atcggttcga cccgcaggcg ctcccgcgcg atcttgttcg accagtcagg
     6301 gttgacgact cggtcgtccg cacaggtgat cgacaccgtc tcgacgttcg gccacgcgtc
     6361 gaagtccgcc acttccgacc acatcgagcg ctggaacctc agctgcgcgg tcgccgcaac
     6421 ggcggcgacc ggcgagcagt cgtggtacag cgctcgccgc gcgcctgcct gtgagaaccg
     6481 gaagcggccc tcggcgtcga actcgaggtc cgcgtccccc aggggcagat cacgctcggc
     6541 gtcctcctgc gcaagcgacg ccagactcgc ctggggggca cccacgatgc cggcgagcat
     6601 gaccatccgg cgaaccggca cccggtgcgc caccagcggt gcgacgaggg cacccagcga
     6661 atgtccgacg acaaccaggt caccggcgtc gtctggcaat gaggccactg ctgcggcggt
     6721 ggactcgttc aacccagcag agacgtcccc acaggggaag tccggggccg tggtctggtg
     6781 cccggcggac cgcaaaatcg cggtgacctg gtcccagcac cagccaccgt gacaggctcc
     6841 atggagcaac aggaagtgcg ccacggtcgc aacgatatga ccgtatgccg cgtcgtcacc
     6901 agacgtatgg gatgaggcgt ttgcggtgcg ccgcgaacgc ttcgtacctg tcgccgaggt
     6961 cggcgagcag agccctctcc tccacccgga tgcggtagct caggccgacc atcgtcagga
     7021 cggtgaccgc aacgagcccg gcccagttgc cccacaccgc acccagcccg atcaccatca
     7081 gcatgatgcc cgtgtacgag gggtggcgga ggactcggta cgggccggcg gcgatcacag
     7141 gctggtcggt gctcgtgtgc acggagtagg tgaagtaccg gccgagggca actttggacc
     7201 acacgcgtag ggcttccccg cagacgaaaa gcacgatccc caccgtcagg ctgaccaatg
     7261 gggggcggat gtcggcgttc gggacgagcc tcggcgccag acccatgagc agcacgccag
     7321 gtgcgacaca gatccgcagg acgaggaggc tgccccggtc cctctgcgtt ccctcggtgc
     7381 ggcggcgtct gccccccacg acctcgatca ccgcagctac caccgcgacc gccacccaca
     7441 ccaggcccag ctggtgagtc tcgaaatacg gcttcacctg agccgccagt acgcccgaat
     7501 gaccaaccat cgcgccacac ctcccaccgc aggtccaacc gcagagcctc acgtcagcgt
     7561 ggacggcgag cgcccctacg gtgctgttca cgcggtcctg ctaaggagag atgggctcgc
     7621 ctgaggggcc ggtgacgtta acgaacgtcc aacctccctt ggcgcgtcgc ggaccccagt
     7681 ggcctatcag gtcgatgtgc acgtttcggg ccacgccggg gttcacaaag ttggagtaga
     7741 acgtgtagcc gccgccggag agccaggagt tggcgatgag gatgtcgttc aggccgccgt
     7801 gcacgttctc cagatagaag gccgagttct tctggtgttg gtacgggccg tcgtccagaa
     7861 cggtgttgag gactcggagg tgggtgatgc cgcgcacctg catggcgtcg ccgtgcgcct
     7921 tcgagtcggg cggaaagtcc atcccgtgca cgatggagtt caccacggtg acgttgctga
     7981 tccgcccgtt cgcggacgag aagaagtcga atccgtcatg ggcgccaacg tcgaggttca
     8041 ccccgtcgag gacgatgccg ctgatgtcgc ggtagtaggc gtcaacgttg aggttgcccg
     8101 tgccgtcgca gttcctgatg gtcaacggcc cgggtccata gaaggcgaag ctggtgaacc
     8161 ggcagtcggt gagggtgatg ttggagccgc tgagcttggg catgccgtgg aagtcgatgc
     8221 cgctcagggt gacgttgttg gccgtgaacg tcagtggccg gttccaggag gtgagcgcca
     8281 cgcctgacgg gacacctgcg gtgttcggtg tgggccgcgg gccacgtacc gtcccgcctg
     8341 gagatggggc tgcgggcacg ggaacggccg gtgtcgcctt ccccgcggca accgggggga
     8401 gcgccgttga tggcgagggt gtcgggcaga gggctgagag tgcggccccc atgagcttca
     8461 gcccgaccgt ctgttgggtg gcgcacgggg ttccccggtt ggccgggacg gcccagacca
     8521 tgcccgacac caccgtggcg attcccactg caagggccaa cagcgacctc cgtttggccc
     8581 cgcccgccaa gcgcatctcc tcatgatggc acccgtgggc cggcgtcgcc ctccgttgcg
     8641 gacgggttga cgtggcgtcc gcgcagtgaa ctcaccattt acgctttccc agtgcgcact
     8701 ggccggggat tctcagacgt cgcgtcccgg cataccctct tgcgctccgg tgagccgagg
     8761 ttccgtcgca cgacgacgcc cagggcgggc gtgccggcag ccttggccgt cggctacctg
     8821 atcctgaccg tcggggtgtt gaccaacggc ccgttcgtgc ggctggacct gttcgtggac
     8881 tctcaggtgc ccgggcgcga cgacggtcct cagttcctgc atgacctcgc gatgggcgtg
     8941 atcacgctgg cgaatccgcc gtacacgacg gtggccctgc tgatggtgat gctcggctgg
     9001 gcgctgctcg cccgctcttg gtggccggtg ctggcctcgg caccccctgt cctggtcatg
     9061 accagcacgg tgttgctgtt caaatggctc gtgggtcgag ccgggccgcc tgggagcggg
     9121 cccgccggca gcttcggtgc ctttccctcc ggtcacaccg ccaccgcgct ggtctgcgcc
     9181 gccacgctgg cggccctcgt cgggttcgtc cgtccccggt gggcctccgt tgctcgactg
     9241 gcggcggcgg cttgggcgct cctggtggcg tggagcgtgg tgtgggtgca ctaccacttc
     9301 ctcaacgacg tccttggctc gttcctgttg ggctcgctgg tcctgtgggc gtgctatcgc
     9361 tggccatgga gcctgcgccg ctagagcgcg tgagcctgcg ccgatagggc gcgtgagtcc
     9421 ggcgcgcatg cgatgctcat gctcgccaga ggtcatcagc cacatcaagg agcccttgtc
     9481 atggacatgc gtttggagct cgtcccgctc cccaccaacg acgtcgaccg cagcaagaag
     9541 ttctacgtcg accagctggg gttcaacctc gaccacgacg tcgagcccgg aaacgggatg
     9601 cgggtggtgc agctgacccc gccaggctca gcgtgctcca tcgcgatcgg cgtcggcatc
     9661 ggcgaccccg acgcgccgcg agtgcagaac ctccacctcg tcgtcgcaga cgtcgagcaa
     9721 gcgcgcactc ggctggtggg caacggtatt gaggtttcgc cggtcaacga cctgggcggt
     9781 gtgaagtacg cctacttcag cgaccccgat ggaaactcct gggcgctcca agagctcctt
     9841 cgctgagccg cacgacgggg tccggccccg aactacactc gccgccatgt cgtggtcggt
     9901 ctggttcacc ctggtgttcg ctgcggtact gatttcgctg acgccgggcg ctggggcgat
     9961 caacaccatg gccaactcga ttggcgcggg ctgggcccgc tcgatctggg ggatcctggg
    10021 gcaacagctg gccctcctgg tgcacgtcgc cgtggtggcc gccggagtgg gcgtgctcgt
    10081 cgccgagtct cccttgctgt tcaacatcat tcggtttgcc ggcgcggcat acctggtctt
    10141 cctcggcgtt cggcagctgc gggcgcgccc caaggtcgtt gacgacgacg cttccgccga
    10201 cctggcccgg ccctgggcga tgtttcggca gggggtactc gtcaacctga ccaaccccaa
    10261 ggcggtcgtc ttctttctcg ccttcacccc tcagttcatc cggcctggtc gcccgctcgc
    10321 cacgcagtac gccgtcctcg ccgccacggt cgtcgtcgtc gacgtgctcg tgatgtggtt
    10381 cgtctttgcg gtggcggccc gtggcttgcg acgactcaca gcgagtgcgt ccgggcaacg
    10441 ccgcctcaac cggatcttcg ggggcctgtt cgtgggcgtg ggggctctgc tcgcggcagt
    10501 tcactgagac gaggggcacc gaccggccct cacagggggg atggggatat agccggtcgg
    10561 tgcccttcga gcgtcgcccg acaaggaggg gggtgtgccg gacaacgctc cgtctcagtg
    10621 tcgaggtgcg gacgagcggc cacctgttgc actggcgtga ctgtccctag tgcatctgca
    10681 tcattctggg gcagccgcga ccgcgcgcac ccggaaccaa ccagtcgtca ccaggccccg
    10741 acgggcctat cggcacctac ggaattcgtc gtttatgtga agtcagactg ctgaaaacgt
    10801 ctgaatgatg gcgagttggc gcgtcatcgt ggctgactgc cgggtatgcc ggtacggtgc
    10861 cccgcagggg ttcgagggac caatgacggt ccggaggagg acgacatggt gatcgcctgg
    10921 atgtcggggg acgtgagcga cgcggtggac aaggatcgag caccgagcgt gtcttcggac
    10981 aagtcccgag ccctcaagcg agtgtttccg tcgagctggc gaggcacggg cgccgcgaat
    11041 gacctgttgc ctgagccgcg aggtggcggg gtcgagcttc ccctgcacga ggcgagcgtc
    11101 gaggcgtagc cgtcccagtc gcgctgtggg gttcgatcac cctgtggggt ttcggccctt
    11161 gcgtccgagt agtcggtgag gttgaaggcc acgggggtac ggccggtcgg ggtgcgggag
    11221 cacgttgtcg atcaggggcg ggagcgtccc gagcgggcgc cgcagctgtt ctgccttcca
    11281 ctcgtcgtgg aggcgggcgc ggttctccag gttgagccgc gtcaggactt gctcgacggc
    11341 ggcaaggatg gacccgcgaa gcagccacga cgagggattg tgctgggcat ccaccatgac
    11401 gagctccgtc aagatcgcct gggtctctcg aaggatgtcc agggtttccg ccaaggcctg
    11461 ccgagtgttc tcctcgcggt cctcggtttc cgccacgacg aggctgccaa aagcgcgtag
    11521 gcagtcggcg gtgtcgtgca ggacgaccgc gaaagccttc cgtagctctt cgccataagg
    11581 gtcatcctcg cggtcggcag cggccggtat ctcggcggcg atcacggtga acagggctcg
    11641 gatgtccagc aggcagtgct cgagggtctc cagcccggtc ccgaggatcg ggccgacatc
    11701 ggctgtgccc agcgcccggg cgttcagtcg cctgctgtcc ttgagggtgt cgatccgttg
    11761 ggtggcgatg gcgacctcgt tggtgacggc ccggacgcga tcgagccacg tctccacctg
    11821 ggcggccgtg acgggtcccc gcaccagatc atccgccgcc gcgtcgagtg ggaaggcggc
    11881 agtgttcgcc acccgctgta gaccctgttt ggcgtgggtc gtcggcagtg cgggcggata
    11941 gacgaggttg aaggccacgc ccacccccgc accgatcagg gtggtcagga tgcggacctc
    12001 ccccgccacg ccgtgattcg tcacgccgag gatgagcatc gcgctgatgg gcgtctccag
    12061 cgcctggtcc ccgagtcgca gcaccttgcc cagaaccaat gacgccgcga tggccgcgcc
    12121 cagactccac caggtgagtc cgatccaggt cgacagcagg cttgcgacca tcaccccgga
    12181 cagtacggcg ccgacccgga cgggcccctg ccttgagggt cgagaaggcg gaggcctgca
    12241 ccacgagcaa ggccgtgagt ggtccggtca ggtcgaccac cccgccggtg accagcagcg
    12301 tcagcagata cgcgaccacc gcagccgagg tgaggcgcgc gaccgtcacc agggttggtt
    12361 ggagtcgagc cggcacctcg ctccagtggg ctgggcgacc cggccacgcg agggtggcga
    12421 gccggtgcca tctcgtgcgc tgggtgacgt cgtcgtctgg gacgttcatg ctgtctgctc
    12481 caactgcggc tggggtgcat ctgaacgtag cggaccgtcg gccgcgcgag agatgccgct
    12541 cgagtggatc cgggggagga tggtgcgatg aagctcggac tgcacatagc ggacttcacc
    12601 tgggacggcg gctcggccgc tctgccccaa cggttgtcgg atattgctgt gggcgctgaa
    12661 caggctgggt acgaccgggt cagcgtcatg gaccacctct ggcagatcca gcacttgggt
    12721 ccgccggagc acgagatgct cgaggcgtac accacgctcg gctacctcgc ggccaagacc
    12781 gagcgagtca agctgctcac cgtggtgacg gccgtcgtct accgcgagcc tgggctcctc
    12841 gccaaggccg tgaccaccct cgacgttctc tcggggggcc gggcgatgct aggtatcggc
    12901 gccgcctgga acgaggagga gtcccgcggt ctgggcctgt tcttcccgtc cacctcggag
    12961 cggttcgagc gactggagga ggccctgcag atctgcaggc agatgtggag cgcggacgat
    13021 ggcccataca agggccggca ctaccagctc gagcgaaccc tgaactcgcc tcaggccgtg
    13081 agccgtcccc acccacccat cctcatcggg ggtgcggggg agcgtaagac gctgcggctg
    13141 gtggcccagt acgccgacgc ctgcaacatc ttcgacaccc cggagctgcc tcacaagctg
    13201 caggtgctgc gcgaccactg tgagcggctg ggccgcgact acgacgagat cgagaagacg
    13261 gcgcaggtgc gcttcgacct cggtccgggg ggtgagcggg tcgaggagct gatcgaccat
    13321 ctgcgcgagc tggcggacct gggcatcgaa gtcgcccatg gcgccctcgc caacgtgagc
    13381 aagcccggga cgttggagtt gatggcagag cgggtgatcc cagccgtcgc cgacctatga
    13441 gggggtgcgt ggcgcgttga cgcgtcgccg cgccggacct cgggcgctac gcggtggggc
    13501 atatgccggg tgacaccctg gggacgacgc gtggcacagt ccgcactgac aggcttgcgg
    13561 atggttcgca cacatcgagg gaacggaaca ccatgactga gcacgagctg gtggcggaga
    13621 ccacgcgtct gggcgggagg ctgcgacagg tgctggccat gttgggtgcc gagttcctgc
    13681 tcggcatggg tgccaacctc gtggggatgc cgtcggaggt gaagggtggt gcacgcgccg
    13741 ccaccctgac gttcatcggt ctgcatgcgc tgttggcgat cgggatcctc gtcgtggcgt
    13801 tcctcgtgag ccgttcggcg cacgaagagc agctggcggt gcggccgacg acgatcggcg
    13861 cagtcagcgt ggccgtgacg ttcatcgcgg gcatgggcac gttggcgacc ggtaacgcgt
    13921 ggctctcctt cgtcatggcg gcggggttcc tggccgctgc gggcatgtac gtcgccgcct
    13981 atgcggaggt cagccgtcta tcgccctcgg cgagctaacg gggccgagtc caaggcaggc
    14041 gtatccggcg gtcagccgtt ggtccaacag ccgagtacgt cggaggcgat ctcgtaggcg
    14101 aggtcggtgc gcttctgctt ctgcgcgccg aagaccgtcg gaagtcccgt ggcgtcgacg
    14161 ctgagcgtct ggctgtcctt gaggacgacg accgtccccg acggtgtgcc gtatgcgcgc
    14221 tcgccgaggc cgatgagggt gtcggtgctg ccgagggtgg gccgcagtcg cgtgaagtag
    14281 gtggctgcgg cggccttgct cggcgagtcc tggacggaga gcttcagggg tcccatcggc
    14341 aggtcgtagg tgcaggtgaa ccgatggtcg acgaaggtgc tgtgcgcggc gggggtcgtc
    14401 ggcaggctga gcacctgctt caccttgtcc ttgatgtcgg tgctgcagac catctgggca
    14461 gccgccgatg gccctgtcgc cgccgcagcg gtcgaagctt tcgacgatgc ggagggggcg
    14521 cccgccgagg gcgtcatgcc gggcatggtc tgcccaggtg ccattgacat ccccggcatc
    14581 gatgttgtcg tggtggctgc ctgggaggcg gcgcacccgg ccaggaggat gccggcggct
    14641 gcaatggtca atggccacaa cggtgctcgc atggttgccg tccttccgtg gttgtcctgg
    14701 tggtcatggc tcaggccagg tgggtggaga cgagcgacgc gtaggcgacg atgttgctct
    14761 cgtagccatg actgctcagg ttgaagcgtc cgccgcaggt gatgagccgc agtgccgcgt
    14821 ggtcggtgtt gccgtacacc tcgagggtgg ggaagtggtc cttcgaatag gacaccacac
    14881 ggtcgacccg gaacaccgcg atcgtgtggt ccgcccgagt cacgttgacc gtgtctccgg
    14941 ggcgcagcgc accaagcttg aagaagactc ccggtccgta ctgggccgag tcgacgtggc
    15001 cgagcaggac cgccggccca agctggccgg gcatcggcga gtaccggtac cagcctgccc
    15061 tggagtcacg tccgaggggc ggcacctgga ccgtgcggtc ggcattcagg ccgagctgca
    15121 tcagctctga gctcacgccg atcgcgggaa tgtccaagcg ggtgggcaag gccgcagtga
    15181 ggatcggacc acggatcgac gtgacgggcc gaccagggcc gggaccaggc gccgagggcg
    15241 gcgtggatgc cgtggctatg ggaaggggaa tggctgcgga tgccggaggt tgcggtgcgt
    15301 gctgctgggc atggatgccg atcgccagca atgcagcccc cacggcgagg agcagcacgg
    15361 ccaacaccgc cgcggggtgg cggcgacgtc ggccgtgctg ctcagtactc atctcggtga
    15421 ggtgtccgcg atcagctgtt cactgcggtg cgacgacgca gaccgaaccc accggccaca
    15481 gcgccggcgg ccacgagggc gccgccgagg gcgagcatgc cctcgtcctg gatgccggag
    15541 gtgctgccac caccggtgct cgcggcgccg ccaggcatgg cggacatctg cgaggc
//
LOCUS       DASYFY010000266         1661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1122610, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000266 DASYFY010000000
VERSION     DASYFY010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1122610"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VGN19_05450"
     CDS             <1..513
                     /locus_tag="VGN19_05450"
                     /inference="COORDINATES: protein motif:HMM:NF024676.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEV7195365.1"
                     /translation="AVEEHRRIHLRYLVPSRDESTERDVDPMRVVNLDARWYLEGWCH
                     RAQDTRLFRMDRIEALTILDEDGHPPADAQLRDLDAGTFTPRADDTLVTLHLSPSATW
                     VSDYYPVESVVTADGDGSQTVTLRTPDTLWLRRLLWRLGGLGTVVSPPEVARSVREGA
                     QAALAAYGID"
     gene            524..835
                     /locus_tag="VGN19_05455"
     CDS             524..835
                     /locus_tag="VGN19_05455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195366.1"
                     /translation="MWWWVLIWVLIVVIAAAYLANRAWAVWGQVRELNVEVARAAAIV
                     AELEAQTNRLGERPPAPELAVFGDPRLLRRERLATRGALREQRRARRAARLPVWARHL
                     D"
     gene            923..1207
                     /gene="tatA"
                     /locus_tag="VGN19_05460"
     CDS             923..1207
                     /gene="tatA"
                     /locus_tag="VGN19_05460"
                     /inference="COORDINATES: protein motif:HMM:NF001854.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEV7195367.1"
                     /translation="MGRGLFEGWHLIILVALLVVLFGFRRLPDAARSLGRSMRIFKSE
                     VDEMKNDGKSAASKDTVKGETVREPSDPAPEASAVREDNSPRTDNQSGAS"
     gene            1240..>1661
                     /locus_tag="VGN19_05465"
     CDS             1240..>1661
                     /locus_tag="VGN19_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEV7195368.1"
                     /translation="MAFRRARNPEGRMSLGDHLRELRRRLVISAIAILLFAVLGWIYY
                     PHVYAALSAPFNDYKTAHPHSVISLNFGNATAAFSQQLSISIFVGVIVSSPVWLYQLW
                     AFIVPGLTKREKRISLAFIAAIVPLFLAGCALAYYVLP"
BASE COUNT          247 a          606 c          546 g          262 t
ORIGIN      
        1 gctgtcgagg agcaccgtcg catccacctg cgctacctcg tgcccagtcg tgacgagtcg
       61 accgagcgtg acgtggaccc catgcgcgtg gtcaacctcg acgcccgctg gtacctcgag
      121 ggatggtgcc accgcgccca ggacacccgc ctgttccgca tggaccgcat cgaggccctc
      181 acgatcctcg acgaggacgg acacccgccg gccgacgccc agctgcgcga cctcgacgcc
      241 ggcaccttca cgccgcgcgc cgacgacacc ctcgtcaccc tccacctcag ccccagcgcc
      301 acctgggtca gcgactacta cccggtcgag tcggtcgtca ctgccgacgg cgacgggtcg
      361 cagaccgtca ccctccgcac accggacacg ctctggctgc gccggttgct gtggcggctg
      421 ggtgggctgg gcacggtggt gtcccctccg gaggtcgcac gctcggtgcg cgagggcgcc
      481 caggccgccc tcgccgccta cgggatcgac tagggtcgac gtcgtgtggt ggtgggtcct
      541 catctgggtg ctgatcgtgg tgatcgccgc ggcctacctc gccaaccgtg catgggcggt
      601 gtggggccag gtgcgcgagc tcaacgtcga ggtcgcccgt gcggccgcga tcgtcgcaga
      661 gctcgaggcg cagaccaacc gcctcggcga acgcccgccg gctcccgagc tcgccgtctt
      721 cggtgacccc cgtctgctgc ggcgggaacg actggccacc cgcggtgcgt tgagggagca
      781 gcgacgcgcc cgtagggctg cgcggctccc ggtgtgggca aggcatctag actgagcacg
      841 tgccgcgagg cacacggcat acctggctcc gagtgaggta ccaccacaaa cggccgcgca
      901 gcggctgaga ggactgaacg ttatgggtcg cggactgttc gagggatggc acctgatcat
      961 cctggtggcg cttctggtgg tgctgttcgg gttccggcgt ctgccggacg ccgcacgcag
     1021 cctcggccgg tcgatgcgga tcttcaagtc cgaggtcgac gagatgaaga acgacggcaa
     1081 gagcgccgcc agcaaggaca ccgtcaaggg tgagacggtg cgcgagcctt ccgacccggc
     1141 ccccgaggcc agcgccgtgc gtgaggacaa cagcccccgc accgacaacc agtccggcgc
     1201 ctcctgaccc agtccccgcc cgcgcccacc gaccgtcgaa tggcattccg ccgtgcccgc
     1261 aaccctgagg gccgcatgtc gctgggggac cacctgcgtg agctgcgccg caggctggtc
     1321 atctcggcca tcgccatcct gctgttcgcg gtgctcggct ggatctacta cccgcacgtg
     1381 tacgcggccc tgtcggcgcc gttcaacgac tacaagacag cgcacccgca cagtgtcatc
     1441 agcctgaact tcggcaatgc gacggcggcc ttctcgcaac agctgagcat ctcgatcttc
     1501 gtcggcgtga tcgtctcgag cccggtctgg ctctaccagc tctgggcgtt catcgtgccc
     1561 ggtctcacca agcgcgagaa gcggatctcg ctggccttca tcgccgcgat cgtgccgctg
     1621 ttcctggcgg gctgcgccct ggcctactac gtgctgccca a
//
LOCUS       DASYFY010000267         4375 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1228128, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000267 DASYFY010000000
VERSION     DASYFY010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1228128"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..584
                     /locus_tag="VGN19_05470"
     CDS             <1..584
                     /locus_tag="VGN19_05470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195369.1"
                     /translation="TSALAKATINDGRIAVAPGNYGPVPVLVQAELTMARNGALDNYL
                     LGSNNQIETNPTKATLFYSDGALWGTIATAQGISGDQWGVMNELWNFPGQFWLILYAI
                     PYHIPAIADSSAADLWVVILVVIAALLQMFLPWIPGLRDIPRVIPLYKVIYRRYYRQD
                     RDGLTGAQDGHAPPDDSDDATSGPSTPVPARPA"
     gene            670..1083
                     /locus_tag="VGN19_05475"
     CDS             670..1083
                     /locus_tag="VGN19_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195370.1"
                     /translation="MSTTSGTGSEADPWRLSTPPGTSDYLMYRDDAADLARLVCVVGT
                     TTLYYDARVLDDLPAMLREHGDWMPLGSADEQKSAKEGTVEAWGRSSSNPIGGWYGLK
                     KGLRGRLGMYLPPLLEALGLAEVEHNPRNNRMRAL"
     gene            complement(1100..2398)
                     /locus_tag="VGN19_05480"
     CDS             complement(1100..2398)
                     /locus_tag="VGN19_05480"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEV7195371.1"
                     /translation="MSLTQSDNSHHSSLGHDETLVEPDWLHEHLSDPGLRLVEVDVSS
                     ARYDDGHIRGAVLWNVYVDLKDADYRTIDRERFTALVRRTGITAESTVVLYGYAPAMG
                     LWLLRLFGHRDVRILNCSREHWVSLGGALTTRAKTFPISDYVLAAEAEQVRASLDQVH
                     AAIDDPGTTILDVRSAAEFSGECFWPSGASEPDGRAGHVPSAIHLPIDAVLDERGRFR
                     DSTELTAVFAGLDLSGASAIVTYCTIGGRASTAWFVLTQLLGVDHVAVYDGSWSQWGR
                     TPTTPVAQGSSVGAGTTPSARPFESRPTIPPSLEVTMSGLIRKSLNAPEETRTFEAGT
                     GHLELVNLDSGPVGRATFLPGWRWSQHVKPIAGTDSCQAAHRGYFVTGRMVVVMDDGE
                     RVEYGPGDFADMSPGHDAWTVGDEPCVFIDWQGFVDYAKR"
     gene            complement(2422..2580)
                     /locus_tag="VGN19_05485"
     CDS             complement(2422..2580)
                     /locus_tag="VGN19_05485"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEV7195372.1"
                     /translation="MARTIRCECGYVARGDDDDDVITAIRAHMRTDHPALLDSVARED
                     LLGWIQVE"
     gene            2637..3398
                     /locus_tag="VGN19_05490"
     CDS             2637..3398
                     /locus_tag="VGN19_05490"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEV7195373.1"
                     /translation="MAAPVPGRIQLCGALVVELGGHRLETGLPGRQGRLLFSYLTLHR
                     HRSCGRDELSQALWGDHVPPAGDAGLNALISKLRRSLGPGIVEGRSSLHLMLGPDTSV
                     DVEVAEKAAHKAESRVALGDWAHAWGPALAALVITERTFLPDDEAPWIDERRAVLTEI
                     HLRALESYAVASLGIGGTELSSAVRAGRQLTRLVPLRESGYQVLMRALAAQGNIGEAL
                     LVHAELCRLLRDELGVSPGAATQAVYQALLHNDVC"
     gene            complement(3442..3948)
                     /locus_tag="VGN19_05495"
     CDS             complement(3442..3948)
                     /locus_tag="VGN19_05495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013770465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF664 domain-containing protein"
                     /protein_id="HEV7195374.1"
                     /translation="MTSSDLLLDAFGRVHGLVPTVVEGLSVEQLRFRPDEHANSIAWL
                     IWHLTRIEDDHVAGVADVEQVWTSQGWMGRFALPFAAGASGYGHSSEDVAAVSPPPEL
                     LAAYYEAVHEQTVAYVQGLTDADLARVVDRAWDPPVTLGVRLMSVISDGLQHVGQASY
                     LRGLVLRR"
     gene            complement(4033..>4375)
                     /locus_tag="VGN19_05500"
     CDS             complement(4033..>4375)
                     /locus_tag="VGN19_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEV7195375.1"
                     /translation="LTDKYLNGIPEGSRAARDSSLTPELLTERNLEHVRALNALAQRR
                     GQSLAQLALAWCLRDERVTSVLVGASSVRQLDENVAALSHLEITAEELGEIDRYAVDG
                     GINLWQDSSSS"
BASE COUNT          704 a         1450 c         1503 g          718 t
ORIGIN      
        1 acaccagcgc cctcgccaag gccacgatca acgacggtcg gatcgctgtc gcaccaggca
       61 actacggacc ggttccggtt ctggtgcagg cggaactgac catggcccgc aacggtgcct
      121 tggacaacta cctgctgggc agcaacaacc agatcgagac caacccgacc aaggccaccc
      181 tgttctacag cgacggagcc ctgtggggca cgatcgcgac cgcgcaggga atcagtggtg
      241 accagtgggg cgtgatgaat gagctgtgga acttcccggg tcagttctgg ctgattctgt
      301 acgcgatccc gtaccacatc ccggcgatcg cggactcgtc cgccgcggac ctctgggtcg
      361 tcatcctggt ggtgattgcg gcactgctcc agatgttcct gccctggatc cccgggctgc
      421 gcgacatccc acgggtgata ccgctctaca aggtcatcta ccgcaggtac taccggcagg
      481 accgggacgg cctgacagga gcgcaagacg gccatgctcc gccggacgat tccgacgacg
      541 ccacctcggg cccgtccacg ccggtgcccg cgcgaccggc ctagccgcgc ggagccacgc
      601 tcggcctggc ggacgcgtac tctcgcgggc ggtgacgacc ggcggtcccg agctcgtgag
      661 gagcacgaca tgtcaacgac cagtggtacg ggctccgagg cagatccctg gcggctcagc
      721 accccgccag ggacgtcgga ctacctcatg taccgagacg acgccgcgga tctcgcgagg
      781 ttggtctgcg tcgtgggtac gaccacgctc tactacgacg cgcgggtcct ggatgacctg
      841 ccggccatgc tgcgcgagca cggtgactgg atgccgctgg gcagcgcgga cgagcagaag
      901 tcggccaagg agggcacggt cgaggcctgg ggacgctcgt cgagcaaccc gatcgggggc
      961 tggtacggcc tgaagaaggg cctacgaggg cgactcggca tgtatctgcc gccgctgctg
     1021 gaagcgctcg ggctggccga ggtggagcac aacccgagga acaaccggat gcgggcgctc
     1081 tgatccgttc cgaactggct cagcgcttgg cgtagtcgac gaagccctgc cagtcgatga
     1141 agacgcaggg ctcgtcgccc acggtccagg cgtcgtgccc cggtgacatg tcggcgaagt
     1201 ccccggggcc gtactcgacc ctctccccgt cgtccatcac cacgaccatc cgccctgtga
     1261 cgaagtagcc gcggtgagcg gcctggcagc tgtcggtccc agctatgggc ttgacatgct
     1321 gcgaccacct ccagcccggc aggaacgtgg cacgtcccac aggaccggag tcgaggttga
     1381 cgagctcgag gtggccagtg cccgcctcga aggttcgggt ctcctcgggt gcgttgaggc
     1441 tcttgcggat cagtccggac atggtgacct ccagtgatgg cgggatggtc ggtcgcgact
     1501 cgaagggccg cgcggacgga gtcgtgccgg cgccgactga gctgccttgg gcgacgggcg
     1561 ttgtgggcgt tcggccccat tgggaccagg agccgtcgta gacggcgacg tgatccacgc
     1621 cgagcagctg ggtcaggacg aaccaggcgg tgctcgcgcg accgccgatc gtgcagtagg
     1681 tgacgatcgc gcttgcaccg gacaggtcca accccgcgaa cacggcggtc agctcggtgc
     1741 tgtcccggaa ccgtccgcgc tcgtcgagca ccgcgtcgat ggggaggtgg atggcactcg
     1801 gcacgtgccc ggcccgtccg tccggctcgg aagcgcccga gggccagaag cactcaccgc
     1861 tgaactcggc ggcactgcga acgtcgagga tcgtcgtacc cgggtcatcg atggccgcgt
     1921 gcacctggtc cagactcgct cggacctgct cggcttcggc agcgaggacg taatcggaga
     1981 tcggaaacgt ctttgccctc gtggtcaggg cgccaccgag gctgacccag tgctcgcgtg
     2041 agcagttcag gatgcgtacg tcacggtggc cgaaaagcct cagcaaccac aggcccatcg
     2101 cgggcgcata cccgtagagg actaccgtcg actccgcggt gatcccggtt cgacggacca
     2161 gtgctgtgaa gcgctcgcgg tcgatggttc ggtagtcggc gtccttgagg tcgacgtaga
     2221 cgttccacag caccgctccg cggatgtgac cgtcgtcgta cctggcggag ctgacatcta
     2281 cctcgacgag ccgcaggcca gggtcggaca ggtgctcatg cagccaatcc ggttcgacca
     2341 gggtctcgtc gtgtccgaga gaggagtggt ggctgttgtc agactgcgtg agactcatct
     2401 ccggcctccg gctcgagcgg gttactcgac ctggatccaa ccgagcaggt cttcccgcgc
     2461 gaccgagtcc aggagggcgg gatggtcggt tctcatgtga gcccggatcg ccgtgatcac
     2521 gtcgtcatcg tcgtcgccgc gggccacgta tccgcactcg catcggatgg ttctggccat
     2581 ctcgttcctc ctggatgtgt ctacgcggat ggtgttgcca caatgttgga gtgaccttgg
     2641 cggcgccagt ccctgggcgg atccagctgt gtggggcctt ggtcgtcgag ctcggcggtc
     2701 accgcctgga gacaggcctg ccgggtcgtc agggtcggct gctgttcagc tatctgacct
     2761 tgcaccggca tcggtcgtgc gggcgcgacg agctgagtca ggcgttgtgg ggtgaccacg
     2821 tcccgcccgc cggtgatgcc gggctcaatg ccctcatctc caagctgcgc cgcagcctgg
     2881 ggcccgggat cgtcgagggt cggtccagcc tgcacctgat gctgggaccg gacacgtcgg
     2941 tcgacgtcga ggtagcggaa aaggcagccc acaaggcgga gtcgcgggtt gcgctcgggg
     3001 actgggcgca cgcctggggt ccggcgttgg cggcactggt catcaccgaa cggaccttcc
     3061 tgcccgacga cgaggccccc tggatcgacg aacgccgggc cgttctgacc gagatccacc
     3121 ttcgtgccct cgagtcatat gccgttgcgt cgctggggat tggaggcacg gagctgagct
     3181 ccgcggtccg cgccggccgc cagctcacgc ggctcgtgcc cctgcgcgag agcggctacc
     3241 aggtcctcat gcgggcactg gccgcgcaag gcaacatcgg ggaggcgttg ctcgtgcacg
     3301 ccgagctctg ccgactgctg cgtgacgagc tcggcgtctc gcccggcgcg gccacccagg
     3361 ccgtgtatca ggccctgctg cacaatgacg tctgctgacg ggcccaattc tgcagacgcg
     3421 ggccgatgta ccggcgctgg atcaccgtcg tagtacgagg ccccgcaggt agcttgcctg
     3481 tccgacgtgc tgcagcccgt cggagatcac gctcatgagg cgcaccccga gggtgacagg
     3541 cgggtcccag gcccgatcga ccacacgtgc gaggtccgcg tcggtcagac cctgtacgta
     3601 ggcgacggtc tgctcgtgca ccgcctcgta gtacgccgca agcagctcgg gcggggggct
     3661 caccgcggcg acgtcctcag aactgtgccc gtaccccgac gcgccggccg cgaacggcag
     3721 cgcgaaccgg cccatccagc cctgtgaggt ccagacctgc tccacgtcgg cgacgccggc
     3781 gacgtggtcg tcctcgatcc gggtgaggtg ccagatcagc catgcgatcg agttggcatg
     3841 ctcgtccggg cggaaccgca gctgctcgac gctgagtcct tcgaccacag tgggaaccag
     3901 accgtgcacc cggccgaacg cgtcgagcag aaggtcgctg cttgtcatga tcgtctcctc
     3961 tcgcagtgca tcgacatcac ggtgcagcat cgcccagccg ggctgcaggc gccacccagg
     4021 acggaaccgc tgtcaggatg agctgctgtc ctgccaaagg ttgatgccac cgtcaaccgc
     4081 gtaccggtcg atctccccga gctcctccgc ggttatctcg aggtgggaga gtgccgcaac
     4141 gttctcgtcg agctggcgaa cactgctagc accgaccagc accgaggtga ctcgttcgtc
     4201 gcgcaggcac caagcgagcg cgagctgggc gagcgactgc ccccgacgct gcgcgagggc
     4261 gttgagcgca cgtacgtgct cgaggttgcg ttctgtgagc agctccgggg tcagcgagga
     4321 gtcccgcgcc gcgcgtgatc cctcgggaat gccgttgagg tacttgtcgg tgagc
//
LOCUS       DASYFY010000268         1521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1071347, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000268 DASYFY010000000
VERSION     DASYFY010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071347"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(523..>1521)
                     /locus_tag="VGN19_05505"
     CDS             complement(523..>1521)
                     /locus_tag="VGN19_05505"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEV7195376.1"
                     /translation="RYQLALEHQNGFQLDLSTGVPDPELLPSLSTALASLTRTATTGS
                     YLDDPVLPALSDLLLDDWPYAVDELAIVDGAMDALDLIVRSTVRFGDRVVVEDPCFPP
                     LVDLLEAVGAQLVGVPLDGEGLALEPLATALAEPVAAVILQPRSQNPTGVTMTARRAR
                     AVARLLDGTSTLVVEDDSAAGLSPSPLVSLGRWRPEHTAYVRSFSKSHGPDLRLAALS
                     APAEVMRSLTVRRQLGQGWSSRLLQQILVSLLTDEGTQASVAQARRCMPRDAPPSSTP
                     CSAREFASLVTRGSISGCRSTTRRLRWSDWPARASEWRTVHPSGWASPSPRSDMSG"
BASE COUNT          243 a          513 c          552 g          213 t
ORIGIN      
        1 caagctgtcg ccagaggcgg cagccgcagc ccgcatcatg ccgcagacac ggcggcgacg
       61 tccaagcggc ggtccgatga ctagccactc ggagccatcg cggtcagtgg gatctgacgt
      121 aggcggtctc cgcgatcggg acgatctgcg ggggccccgc tgtcgctaac ttcgcgtatt
      181 gggagataaa cggccgttgg cggtgtgcac agacagggag ccaaggggtg ctacgccgag
      241 aatctggggg atatcgggag caaatctgcg tcagtggaac gatccttgaa ggggtgacgc
      301 gcgaggcgtc atgatcgggg gacaagagcg tctgcctttg ggcagcgggc cgaaggccgg
      361 gcaaccctgc agcccggcct tcgtgccgcc ccctgtcgac cggaccgaga ccgagtgtct
      421 ggaccggcag tcagcgtgcc cgagcgctgc gacccgtggt ccgggccgct gcggcgatcg
      481 cctcggccag ctcctcgaac ccgtcccgcg ccagccccgc cgtcaccctg acatgtccga
      541 cctcggggac ggactggccc acccggaagg gtgcaccgtg cgccactccg atgccctggc
      601 tggccagtcg gaccaccgca gccgtctcgt cgtggaccgg cacccagata ttgatcccct
      661 cgttaccagg gacgcgaatt cccttgcgct gcaaggcgtc gacgagggcg gcgcgtcgcg
      721 cggcatacac cgacgcgcct gtgccacgct ggcctgcgtt ccctcgtcgg tcagcaggct
      781 gaccaggatc tgctgaagga gcctgctgga ccacccctgg cccagctgcc gtcggaccgt
      841 cagggagcgc atcacctccg ccggcgcgga cagcgcggcc aggcgcaggt cgggtccgtg
      901 cgacttggag aacgacctca cgtatgccgt gtgctcgggt cgccatctgc ccaggctcac
      961 cagcggtgag ggggacagcc cggcggcgga gtcgtcttcg acgaccaggg tcgaggtccc
     1021 atcgaggagc cgcgcgacgg ccctggcacg gcgtgcggtc atcgtgactc cggtggggtt
     1081 ctgcgagcga ggctggagga tgactgccgc caccggctcc gcgagcgccg tcgccagcgg
     1141 ctcgagagcc agcccctccc cgtccagggg aacgccaacg agctgggctc cgacggcctc
     1201 cagcaggtcc acgagcggcg ggaagcacgg gtcctcgacg acgacccgat cgccgaagcg
     1261 cacggtactg cggacgatga ggtccagggc atccatcgcg ccgtcgacga tggcaagctc
     1321 gtccacggca tacggccagt cgtcgaggag gaggtccgac agggctggca gcaccgggtc
     1381 gtcgaggtag gaccccgtgg tggccgtccg ggtcagcgac gccagggcgg tactcaagct
     1441 ggggaggagc tcggggtcgg gcacgcccgt ggacaggtcg agctggaagc cgttctggtg
     1501 ctcgagggcc agctggtagc g
//
LOCUS       DASYFY010000269         2447 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_702704, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000269 DASYFY010000000
VERSION     DASYFY010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_702704"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VGN19_05510"
     CDS             <1..255
                     /locus_tag="VGN19_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE-like domain-containing protein"
                     /protein_id="HEV7195377.1"
                     /translation="SRERAYALDARNRATPGVVTAAVERVVRLGFEVRVELRADSGER
                     FAAQITRARADALDLVEGETVYARATKGPDLAETEPALAI"
     gene            395..859
                     /locus_tag="VGN19_05515"
     CDS             395..859
                     /locus_tag="VGN19_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEV7195378.1"
                     /translation="MDISARTEYAVRAMLILAEAATSAAGPVSVETLAFRQTLPRKFL
                     EAIVADLRAAGLVKSTRGARGGYSLTREARDISLGDVFRAVDGPLAEVRGLRPHETVY
                     EGVAQHLPTVWVAVRASLRSVLDETSLADVLSGNLKDRVAALAADPEAWRSR"
     gene            890..2383
                     /locus_tag="VGN19_05520"
     CDS             890..2383
                     /locus_tag="VGN19_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7195379.1"
                     /translation="MSSIDPDDLATTLKVLAQLPNLEAGHPDLATVKQATGRMYKQVR
                     KARRREARQPQVDHDEALLALTATGSPMRIDDETKGITLVSSVRGAHAGELMKSRGCY
                     ICKTEYTLVDAFYHWLCPDCAELSHVKRDQRTDLTGRRALLTGGRAKIGMYIALMLLR
                     DGAHLTITTRFPHDAARRFAAQADSADWLHRLKVVGVDLRDPTQVVALADEVAAAGPL
                     DILINNAAQTVRRSPGAYAHLVDGESVPLPSGIPLPELVTFDRISDAHPANLIGTLRE
                     QKVPHHEGESERAAAQALAQRSAASMTSMALSAGHASLDAHLAGTAVDAGGLLPDVQR
                     TNSWTQKVEEVDPLELLEVQLCNSTAPFILISRLRPAMRAAVTAGARRAYVVNVSAME
                     GQFSRRYKGPGHPHTNMAKAALNMLTRTSAGELFETDQILMTAVDTGWITDERPHHEK
                     LRIAAEGWHAPLDLVDGAARVYDPIVRGEAGEDLYGCFVKDFEPSPW"
BASE COUNT          381 a          865 c          841 g          360 t
ORIGIN      
        1 agtcgcgaac gggcttatgc gctcgacgcc aggaaccgtg ccacccccgg ggtggtgacg
       61 gcggcggtcg agcgggtggt ccgactgggg ttcgaggtca gggtggagct gcgcgcggac
      121 tcgggggagc gttttgcggc ccagatcacc cgggcgcggg ccgatgcgct cgacctcgtc
      181 gagggcgaga cggtgtacgc ccgagccacc aaaggccctg acctggccga gaccgaaccc
      241 gcactggcca tctgacgcgg ctctacgacg tgcagtaccc agacgacgcc gcgagcctga
      301 gcacacccac ctccgccacc cccgccaccc ccgccccact gcacgtcgct gcgcccgtgc
      361 acggcgcgtg ctcgcggtgc gcaagaatgc ccaggtggat atctcggcgc gcacggagta
      421 cgccgtccga gcgatgctga ttctcgcgga ggccgccacg tctgctgccg ggccggtcag
      481 cgtcgagacg ctggcctttc gccagacgct gccccgcaag ttcctcgagg cgatcgtggc
      541 cgaccttcgc gcggcggggc tggtcaagag cacgcgcgga gcccggggcg ggtactcgct
      601 gactcgcgaa gcgcgcgaca tctcgctcgg cgacgtgttt cgtgccgtgg acgggccgct
      661 cgccgaggtt cgcgggctgc gaccgcacga gaccgtctat gaaggtgtcg ctcagcatct
      721 gccgaccgtg tgggtagccg tgcgtgccag cctgcgctct gtgctcgatg agacgagcct
      781 ggctgacgtg ctctccggga acctcaagga ccgcgttgcc gccctggccg cggatccgga
      841 ggcctggcgc agtcgctgag cgccctgggg ggatccgtat gatcacgcgg tgagcagcat
      901 cgaccccgac gacctcgcga cgaccctcaa ggttctcgcg cagttgccga acctcgaggc
      961 tggtcatccc gatctggcta ccgtcaaaca ggccactggg cgcatgtaca agcaggtccg
     1021 caaggcgcga cgtcgtgagg ctcgccagcc ccaggtcgac cacgacgagg cgctgctggc
     1081 cctgaccgcg accggttcgc cgatgcgcat cgacgacgag accaagggca tcaccctggt
     1141 ctcgtcggtc aggggtgccc atgccggcga gctgatgaag tcacgcggct gttacatctg
     1201 caagaccgag tacaccctgg tcgacgcctt ctaccactgg ctctgccctg actgcgcgga
     1261 gctcagtcac gtcaagcgcg accagcggac cgacctgacc ggccggcgcg cactgctcac
     1321 cggtggccgc gcgaagatcg ggatgtacat cgcactcatg ctcctgcgcg acggggctca
     1381 cctgacgatc acgacgcggt tcccgcacga tgctgcgaga cgctttgcgg cgcaggcaga
     1441 ttcggccgac tggctgcacc ggctcaaggt cgtcggcgtc gacctccgcg accccaccca
     1501 ggtggttgcg ctcgccgacg aggtcgccgc ggccggtccg ctcgacatcc tcatcaacaa
     1561 cgccgcccag acggtgcggc gctcaccggg tgcgtacgcc cacctcgtcg acggtgagtc
     1621 tgtgccgctg cccagcggca taccgctgcc tgagctggtg accttcgacc ggatcagtga
     1681 cgcgcacccg gccaacctca tcggcaccct gcgcgagcag aaggtgcccc accacgaggg
     1741 cgagagcgag cgggccgccg cccaggcgct ggcccagcgc tcggccgcct cgatgacctc
     1801 gatggcgctg tcggcgggcc acgcgagcct cgacgcccac ctggcgggga cggcagtgga
     1861 cgcgggcgga ctcctgcccg atgtgcagcg caccaactcc tggacccaga aggtcgagga
     1921 ggtggacccg ctggagctcc tcgaggtgca gctgtgcaac tcgaccgcgc cgtttatcct
     1981 catctcgcgg ctgcgtccgg ccatgcgggc tgccgtgaca gccggagcac gccgggccta
     2041 tgtcgtcaac gtctccgcga tggagggcca gttctcgagg cgctacaagg gcccgggtca
     2101 cccgcacacg aacatggcga aggcggccct caacatgctc acccggacca gtgcggggga
     2161 gctgttcgag acggaccaga tcctcatgac cgccgtcgac accgggtgga tcaccgatga
     2221 gcgcccccac cacgagaagc tgcgcatcgc ggccgagggc tggcatgcgc cgctcgacct
     2281 ggtggacggg gcggcccggg tgtacgaccc gatcgtgcga ggcgaggcgg gcgaggacct
     2341 ctatggatgc ttcgtgaagg acttcgagcc cagcccctgg tgagcccttt cccccggtgg
     2401 ggtcggtcgt ggtcggaggc acctgctgag gtctggcaca atggtcg
//
LOCUS       DASYFY010000270         2132 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_913030, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000270 DASYFY010000000
VERSION     DASYFY010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_913030"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VGN19_05525"
     CDS             complement(<1..347)
                     /locus_tag="VGN19_05525"
                     /inference="COORDINATES: protein motif:HMM:NF024122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HEV7195380.1"
                     /translation="MEAAFFDLDKTVIDRASIAAFGRPVLKGGLINRRLVARAAISQL
                     IYLYFGADEDRLVRVRESMLAVTKGWDRAQVRQIVRETMLQTIEPIMYAEALELMELH
                     RAAGHRVYLVSASP"
     gene            complement(525..1196)
                     /locus_tag="VGN19_05530"
     CDS             complement(525..1196)
                     /locus_tag="VGN19_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEV7195381.1"
                     /translation="MKVAIAGAGSVGTAIASDLHGNGHEVLVVERDPDLVEKLRPTID
                     VTWVAADACEVSSLDAAGFATVDVVVAATGDDEDNLVISLLSKQEFAVPRVVARVNHP
                     KNQWLFNESWGVDVSVSTPQLLTALVEEAVSVGSLVRLLQFQGGAAHLVEITLAEDSP
                     ANDSAIADLDFPRDAVVVAVVRIDRLIVPRGDTTLQSGDEVLVLVTEEAEDAVHSLFI
                     AEQTL"
     gene            complement(1193..1876)
                     /locus_tag="VGN19_05535"
     CDS             complement(1193..1876)
                     /locus_tag="VGN19_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005270896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEV7195382.1"
                     /translation="MLHCGVHVIVVGCGRVGSGLALSLSAEGHSVAVIDKNERAFRRL
                     KDWDGQRLVGSGFDRDDLEKTGALHADALAAVTSGDNTNILTVRIARETYKIPHVVAR
                     IYDPRRAEIYQRLGIPTVATVTWTIDQVRRRLLADEDVRDWTDASGRLSLVDRSLPDS
                     WAGRALSELEHSGRLTVVAVTRAGEPRLDPGDLVGQEGDVLHLAVLDGALRELDAALA
                     RHPTSETGS"
BASE COUNT          356 a          714 c          737 g          325 t
ORIGIN      
        1 ggcgaggccg acacgaggta gacgcggtgg ccggcggctc ggtgcagctc catcagctcg
       61 agcgcctcgg cgtacatgat cggctcgatc gtctgcagca tcgtctcgcg cacgatttgg
      121 cggacctggg cacggtccca ccccttggtc acggccagca tggactcgcg cacccggacg
      181 aggcgatcct cgtcggcgcc gaagtagagg tagatcagct gcgagatggc ggcccgggcc
      241 acgagccgcc ggttgatcag cccgcccttg aggacgggcc ggccgaacgc agcgatggag
      301 gcccggtcga tgaccgtctt gtccaggtcg aagaatgccg cctccatacc ttcaatggta
      361 cgggcgactc cacctcgaac ttgagccacc gtgacgaaca aaggatcggg gcgcgaacac
      421 tcggcgctct gagcaggggc tgcgaaggag ggacgccagt tgccatccgg ttgcgccgcg
      481 tcggtccgcg tcggtccgcg tcgcgtccgc cggggtccgc tgggttagag ggtctgttcg
      541 gcgatgaaca gcgagtggac ggcgtcctcc gcctcttccg tcaccaagac gaggacttcg
      601 tcaccagact gcagcgtggt gtcgccccgg ggcacgatga gccggtcaat ccgtacgacc
      661 gccacgacga ccgcgtcgcg cgggaagtcc aaatccgcga tggcagagtc gttggcgggt
      721 gagtcttcgg cgagggtgat ctcgaccagg tgggcggcgc caccttggaa ctggaggagc
      781 cgtacgagcg agcccacgga gacggcctcc tccaccaggg cggtgagcag ctgtggggtg
      841 gagaccgaga cgtcgacccc ccagctctcg ttgaagagcc actggttttt cgggtggttg
      901 acccgcgcca cgacccgggg cacggcgaac tcctgcttgg acagcaacga gataaccagg
      961 ttgtcctcgt cgtcgccggt cgccgcgaca acgacatcga cggtggcgaa cccggcggca
     1021 tcgagagagg agacctcgca cgcgtcggcc gccacccagg tgacgtcgat agtgggccgc
     1081 aacttctcga cgagatccgg gtccctctcc acgacgagca cctcatggcc gttcccgtgc
     1141 aggtcggacg cgattgcggt gcccacactg cccgcgcccg cgatggccac cttcacgagc
     1201 ccgtctccga agtcggatgt cgtgccaagg ccgcgtcgag ctcgcgcagc gcgccgtcga
     1261 gcacggcaag gtgcaagaca tcgccttcct ggccgaccag gtcgcccggg tcgaggcgcg
     1321 gctcgccggc tcgggtgacc gcaacgacgg tcagtcgtcc agagtgttcg agctcgctga
     1381 gcgcgcggcc tgcccacgaa tcaggcaggg accggtcgac caggctgagg cgaccactcg
     1441 cgtctgtcca atcgcgcacg tcctcgtcgg ccaggagccg tcggcgcacc tggtcgatgg
     1501 tccaggtcac ggtcgccacc gtgggtatgc caaggcgctg gtagatctcg gcgcgacgag
     1561 ggtcgtagat gcgcgcgacg acgtggggga tcttgtatgt ctcgcgagcg atgcgcacgg
     1621 tcaggatgtt ggtgttgtcg ccgctcgtga ccgcagccaa ggcgtcggcg tggagcgcac
     1681 ccgtcttctc gagatcgtcc cggtcgaacc ctgatccgac gaggcgctga ccgtcccagt
     1741 ccttgaggcg ccggaaggca cgctcgttct tgtcgatcac ggccacagaa tggccctcgg
     1801 cgctcagcga gagggcgagc cctgagccga ctcggccgca gcccacaacg atcacatgca
     1861 cgccacagtg caacacgccg ggtcgggcgg tgcaaaagtt ggcccgtccc gaacctgacc
     1921 cgtttgcccc gatcctacgc caggggtcgc ccggtggagg gcgagggccc acggcaaccc
     1981 atgatttact gagcgcatgg agcacgcgga aggcagcggc gacggtgtgc tggacccgtc
     2041 gggggcaccc gggggcacgc cgagctcacc agtgacttcc gtggccgacg cgcgcatgaa
     2101 gcctgccgcg tccactctgc cagagctcga tc
//
LOCUS       DASYFY010000271         4077 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_545568, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000271 DASYFY010000000
VERSION     DASYFY010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545568"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VGN19_05540"
     CDS             complement(<1..276)
                     /locus_tag="VGN19_05540"
                     /inference="COORDINATES: protein motif:HMM:NF019463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaX family transcriptional regulator"
                     /protein_id="HEV7195383.1"
                     /translation="MTSAGDALQPPSPRALLLTVLGLYVRELGGWISVGRLIDLMGCV
                     SVEAQAVRSLVARLKKNGFVVSEKRDGAAGYALSEYGFSVLAEGDQRI"
     gene            complement(360..772)
                     /locus_tag="VGN19_05545"
                     /pseudo
     CDS             complement(360..772)
                     /locus_tag="VGN19_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015883786.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
     gene            complement(1051..3591)
                     /locus_tag="VGN19_05550"
     CDS             complement(1051..3591)
                     /locus_tag="VGN19_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195384.1"
                     /translation="MAGAALAATPFLASASYAGGSPGGGGRYHDAGDQAAELMTSQGE
                     FAQARTAPTGMVAPGAYAAAYGQLSSLPAAPSAWSSVTNVPYNSDDPRYRDPSASNSG
                     GGAGYVSGRVQALAVDAHCIFAGGAAGGVKRSCDNGTSWTPIADALPAQSIGNMSIAP
                     DGALWVATGDGTTGSGTYVGAGVFRLASPDTGTFTAASKIGGTELDSQVIRRILIDAP
                     NGRVFVAGSRGLYMHSLSGASSTAWTQALAPCAQGMLSCSDVNANYRDIANDVVVQPG
                     TGGQVILANVAWRSGAAYNGFYLSRDGGTTWSKINPLGAINPKDVGNSTLKYSADGSK
                     LYVVMESPAALNSGAASALAGVYVSKNGAAAGPYSQIANPSTLAQSGSAERKQRIGKG
                     YQPGVQAWYNQFLGVDPTNAKHVYVGLEEVYESWDGGATWNTIGRYWDFGFQCWSYID
                     AKNTCDGNVVHSDQHDIAFGSGSNAGQVYVGNDGGLYQRTVSPTASSWRSLSASGQLN
                     LLQYYSVGVGKDVAHPGQVQVWGGLQDNGVSLLDPGNNGVMVSPYGGDGGQQLVDPNN
                     GCRTVGEYVDLTLQMTTNCGVADGSPSSDNAIISIAPSDPLPRFTAPFSADQTDPNTW
                     VAGGEYVWTNTKTWSSTSGADWTKAADTGAGHSITALASRNHLTWAGWCGTCNPGSAF
                     GRGLMSNANGSYQQVVTPSSVPLRMVTGVTPDPADAHSAYVVFGGYSRTWTDGPGSDL
                     AGAGHLWKVTLNGATDSAGNAMATWTDVSGNLPDVPGDNLLIASNGRVLLATDLGLVE
                     TTLASLSSGAPQWSRDAIPATIATQALEGPDGNVYVSTFGRGIYRAAL"
BASE COUNT          625 a         1374 c         1441 g          637 t
ORIGIN      
        1 gatgcgctga tccccctcag ccaggacgct gaagccatac tccgaaaggg cgtagccagc
       61 ggcgccgtcg cgcttctcgc tgacgacgaa cccgttcttc ttgagccggg cgaccaacga
      121 acgcacggct tgggcctcga cactcacaca tcccatgagg tcgatgagcc ggccgacgct
      181 gatccagccg ccgagctcgc ggacgtacag gccgagaacc gtcagcaaca gggcacgtgg
      241 tgacggcggc tgcagagcat caccggccga cgtcatgggc ggaaatctag ccgtgaccgg
      301 tcgcgccatg gcatccggca ctccgccggg cgtgaaggtg gcaaggctag gcaaggtcgt
      361 caagggggcg ccgacctcgc aagcagccct gcggtaccga tccaggtcag caggcctggg
      421 ctccgccctg agcagctcct gctcgcccgt cgacactggg gtggctcatc gccctgggcc
      481 agcacccagg cggcctggcg ggccgctccg tccgcggcat agtccctggc gtcggcacga
      541 ggacagggac tccgagcacg gtcgacgcga ccgcgcgcac ggcagcggac tgcgctgccc
      601 cgccgaccag ggtgaccctg tcgaccgtca caccctgccg tcgcaccgcc tcgatgccgt
      661 ccgccatgag acacagcccc tcgaccgcag ctcgggcgag gttctcccgc gtcatggacg
      721 caagcgtcat cccatgcagg gggccggtgg ctgtcgggag gttcggcgtg cgcatcgagg
      781 cagaccatgc cgtgctgctg cgcggcgagc gagacagcag cgacatcgcc ggagcgcgcc
      841 ggcctgcttc atggcctccc ggacgacgac agtgcacgac tgcgtggagg agtcgacgcc
      901 ggcgacgagg tccatgcctc atcagatcac ggcccgtcac gaagccgccc ggggcagacg
      961 agcgtaggcg ccgcagctcc tctggtcgag gagctgcggc gcccaaggtg acccgcctgg
     1021 ctctgggagt caggcgactc tgagtgcctc ctagagagcg gcgcggtaga tgccgcgccc
     1081 gaaggtggac acgtagacgt tgccgtcagg tccctcgagg gcctgggtgg cgatggtggc
     1141 cgggatcgcg tcgcgggacc actgcggcgc ccccgagctc agcgatgcca gcgtcgtctc
     1201 caccaggccc aggtcggtgg cgaggaggac ccggccgttc gaggcgatca gcaggttgtc
     1261 gcccgggacg tccgggaggt tgccgctgac gtcggtccac gtggccatcg cgttgcccgc
     1321 cgagtcggtg gcgccgttga gcgtcacctt ccacaggtga cctgcaccgg cgaggtcgct
     1381 gcccgggccg tcggtccagg tccgcgagta gccgccgaac accacgtagg cgctgtgcgc
     1441 gtcggccggg tcgggcgtca caccagtgac catgcgcagc ggcacactcg agggagtgac
     1501 cacctgctgg tagctgccgt tggcgttgct catcaggcca cgaccgaagg ccgaacccgg
     1561 gttgcaggtg ccacaccagc ccgcccacgt caggtggttg cggctggcca gagccgtgat
     1621 ggagtgaccg gccccggtgt cggcggcctt cgtccagtcg gcgccactgg tgctcgacca
     1681 cgtcttggtg ttggtccaga cgtactcgcc accggcgacc cacgtgttcg ggtcggtctg
     1741 gtcggcgctg aacggagcgg tgaagcgcgg cagcgggtcg ctcggcgcga tgctgatgat
     1801 ggcgttgtcc gaggacgggc tgccatcagc cacaccacag ttggtcgtca tctgcagggt
     1861 gaggtcgacg tactccccca ccgtccggca cccgttgttc gggtcgacga gctgctgccc
     1921 gccgtcaccg ccgtacggcg agaccatcac accgttgttg cccgggtcga gcagcgagac
     1981 accgttgtcc tgcagtccgc cccagacctg gacctgcccc gggtgagcga cgtccttgcc
     2041 gacacccacg gagtagtact gcagcaggtt gagctggcca gaggcggaca gggaccgcca
     2101 ggacgatgca gtcggcgaga cggtccgctg gtagagacca ccgtcgttgc cgacgtagac
     2161 ctggcccgcg ttcgatccgc tcccgaaggc gatgtcgtgc tggtcggagt gcacgacgtt
     2221 gccgtcgcag gtgttcttgg cgtcgatgta cgaccagcac tggaagccga agtcccagta
     2281 gcggccgatg gtgttccagg ttgcgccacc gtcccacgac tcgtagacct cttccaggcc
     2341 cacgtagacg tgcttggcgt tggtcgggtc gacaccgagg aactggttgt accaagcctg
     2401 cacaccgggc tggtagccct tgccgatccg ctgcttgcgc tcggccgacc cgctctgcgc
     2461 gagggtgctg gggttggcga tctggctgta cgggccggcg gcggcgccgt tcttggagac
     2521 atagacaccc gcgagtgcac tggcggcgcc ggagttcagg gcggccggcg actccatgac
     2581 cacgtagagc ttggacccgt ccgcggagta cttcagggtg gagttgccca cgtccttggg
     2641 gttgatcgcc ccgagggggt tgatcttcga ccaggtcgtg ccaccgtcac ggctgaggta
     2701 gaagccgttg tatgccgcgc cgctgcgcca cgccacgttg gccaggatga cctggccgcc
     2761 ggtgccgggc tggaccacga cgtcgttggc gatgtcgcgg tagttggcgt tgacgtcgct
     2821 gcacgagagc atcccctgcg cgcagggagc cagtgcctgg gtccacgcgg tggacgacgc
     2881 cccggagagg gagtgcatgt agaggccgcg cgacccggcg acgaacaccc ggccgttcgg
     2941 ggcgtcgatg aggatgcggc ggatgacctg gctgtccagc tcggtgccgc cgatcttgga
     3001 ggccgccgtg aaggtacccg tgtcagggga ggccagccgg aagacacccg caccgacata
     3061 ggtgccggag cccgtggtgc cgtcaccggt ggccacccac agcgcgccgt caggcgcgat
     3121 ggacatgttg ccgatcgact gcgccggcag agcgtcggcg atcggcgtcc aggacgtgcc
     3181 gttgtcgcac gagcgcttga cgccgcccgc cgcgccgccg gcgaagatgc agtgcgcgtc
     3241 gacggcgagg gcctggaccc ggccgctgac gtatcccgca ccgccaccgc tgttcgaggc
     3301 gctcgggtcg cggtagcggg ggtcgtcgga gttgtagggg acgttggtca ccgagctcca
     3361 cgccgacggt gcggcgggga gagaggacag ctggccgtat gccgcggcat acgcaccggg
     3421 agcaaccatg ccggtgggtg cggtccgcgc ctgcgcgaac tccccctggg aggtcatgag
     3481 ctcggccgcc tggtcacctg cgtcgtggta ccggccacct ccgcccgggc tgcctccggc
     3541 gtagctggcg ctcgcgagga aaggcgtcgc tgcgagcgcg gcacctgcca ccaggcagac
     3601 cgtggcacgg cgcaggccgc gccgtttcgt cgtagagcgt gtcgtgtgat ccgtcatgta
     3661 ctgaacccct cgttgccgga cgccatggat ggcgcgcgcg tcatcgccgt ctcgtgaaca
     3721 ggcgaccccc gcgacgaccc accccaactc ggcatgcgca cgggactgct cgcactgtag
     3781 acccgcaatc ccgtttcgca atgcctgcga gaccatcaat tttgcggtca cgctcggtgg
     3841 cccactcaaa tttacgtaat gcttaccaag gtgccgtaag agcaccctga cctgcaaaga
     3901 cacacccagc tggctcgctt cgcgcgcccc gagcaggtca ggtgaagctg atctccgccg
     3961 tggtcgccgt gccagccgtg cgccctgggg cggtgtggta cttccagtag aggttggtgt
     4021 gggcgatgac tttctcgggg gacggggcac cgaacgacga caggtcctcg gtggtgt
//
LOCUS       DASYFY010000272         7651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1386787, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000272 DASYFY010000000
VERSION     DASYFY010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7651
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1386787"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VGN19_05555"
     CDS             <1..636
                     /locus_tag="VGN19_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEV7195385.1"
                     /translation="AVMAINHTGYFDFTYAGLAGVKAGRLVRFMAKKSIWSNPVGGPL
                     MRGMHHIPVDRSAGQESYDLALAALRAGEIVGVFPEATISRSFELKGFKTGAVRLAQD
                     AGVPVLPTTIWGSQRVWTKGKPRKMGRHGFPLLITVGPAVTVDPAENATEATERIKAA
                     MATQLHADQERYPAWPDAERDLLPARLGGSAPTLEEADSMDSGERRKRAQA"
     gene            complement(722..1258)
                     /locus_tag="VGN19_05560"
     CDS             complement(722..1258)
                     /locus_tag="VGN19_05560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase family protein"
                     /protein_id="HEV7195386.1"
                     /translation="MSPLELHRSESWLTREELDAARERLPILYVDAVPVRVDERGSVT
                     AVGLLLRASDGVMNRELVSGRVLYHERVRDAVIRHLEKDLGPMCLPQMPASPQPFTIA
                     EYFPTPGVTPYHDPRQHAVALAFVVPVAGDCQPQQDALDLAWLTPEEATDPALLREMD
                     GGHGALLRQAMAHLGHAV"
     gene            complement(1268..2623)
                     /locus_tag="VGN19_05565"
     CDS             complement(1268..2623)
                     /locus_tag="VGN19_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEV7195387.1"
                     /translation="MTVIPDAVAGRRVTDPDVKARYAVDESVGALAPGTFEVIRARDL
                     GDVVEVLRWAQETGTPVVPQGARSGLAGGSVAIEGGVVLNLEGLDQLVEVDQVESLAV
                     VGPGVVTAQLKATAAQAGLFYPPDPASSAFCTVGGNVATNAGGLCCVKYGVTADYVRA
                     LQVVLPGGEVIRTGHRTAKGVAGLDLTGLFVGSEGTLGVVTEVTVKLVPAPDPALTAL
                     ATFDSLDAASRAIVALRRERHRPSLLELLDGASVEAIQALADYGFPPGCEAALIVQSD
                     RPGHTTDDVHRYAAVLEAAGATEVAVADDTKESEALLAGRRVLHQALVAKGTHFVEDL
                     CVPVGQLTALIAAGREISRRTGVELTMSGHGGDGNLHPSLFFDPLDDASRERAEAAFG
                     ELVGVALAMGGTITGEHGVGSLKSRWLPDEVGLASVERQRSVKSLFDPRGILNPGRVY
                     W"
     gene            2910..6227
                     /gene="ileS"
                     /locus_tag="VGN19_05570"
                     /pseudo
     CDS             2910..6227
                     /gene="ileS"
                     /locus_tag="VGN19_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593381.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
     gene            complement(6208..7467)
                     /locus_tag="VGN19_05575"
     CDS             complement(6208..7467)
                     /locus_tag="VGN19_05575"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7195388.1"
                     /translation="MSSSPATPAAVAHQATTEALWERAAVIAGQLNRAHGALVEVAAG
                     LIEGGHWGDGGFRSPEHWLVVRAGLSPARATEVVLIARRRDELPDTADALATGELSVD
                     QAAVLARHARADHQAGMARFARSATVPQLRHALSKSVFVDSDAPDEAADQAAARPDLT
                     MHYDSVGRFHLRYSAPAEVGALVEQAVKEAKDALFTAARGETSVGPSYADALAEMAQR
                     SLASIESTNRAAHYRVYVHLSTEGAWVSGGGAITPAMARRFSCDGIVQPLWETQGRPV
                     SVGRDQRIVPARTRRLIEDRDRGCRFPGCSATKFVEIHHLDHWADGGATDYDRQVSLC
                     PFHHDAHHRGDVTIAGDPTQPGRLRVTNRYGLRIRPPDRAELATGAQRDADPKGSPPY
                     ASPSGGPMRTRDVEFVPDDRPLRASSP"
BASE COUNT         1205 a         2640 c         2656 g         1150 t
ORIGIN      
        1 gcggtcatgg ccatcaacca caccggctac ttcgacttca cgtatgccgg gttggccggc
       61 gtcaaggcgg gtcgcctggt gcgcttcatg gccaagaagt cgatctggtc gaacccggtc
      121 ggcgggcccc tgatgcgagg catgcaccac atcccggtgg accgctcggc cggtcaggag
      181 tcgtatgacc tggcgctggc ggccctgcgc gccggggaga tcgtcggcgt gtttcccgag
      241 gccaccatct cccggtcgtt cgagctcaag gggttcaaga ccggcgcggt ccggctcgcg
      301 caggacgcgg gagtcccggt gctgcccacg accatctggg gatcgcagcg ggtgtggacc
      361 aagggcaagc cgcgcaagat gggccggcac ggcttcccgc tgctgatcac cgtggggccg
      421 gccgtcacgg tcgatcccgc tgagaacgcg accgaggcca ccgagcggat caaggccgcc
      481 atggccaccc agctgcacgc cgaccaggag cgctatccgg cctggccgga cgccgagcga
      541 gacctgttgc ccgctcgact ggggggctcg gcgccgacgc tggaggaagc cgactcgatg
      601 gactccggcg agcggcgaaa gcgtgcccag gcctgagctg gtcgcgccca agctggttgc
      661 gcccaagctg gtcgcgcctg agctgatccc gcccgagctg gtcgcgcgga cctgagctga
      721 tctagacggc gtggcccagg tgggccatcg cctgacgcaa caacgctccg tgcccgccat
      781 ccatctcgcg cagcagggct gggtcggtcg cctcctcggg ggtgagccag gcgaggtcga
      841 gggcatcctg ctgcggttgg cagtcacccg ccaccggcac gacgaacgcc agcgcgacag
      901 catgctggcg ggggtcgtgg tacggggtca cccccggtgt ggggaagtac tcggcgatgg
      961 tgaacggctg cggactggcc ggcatctgcg gcaggcacat cggcccgagg tccttctcga
     1021 gatgccggat caccgcatcg cgcacccgct cgtgatagag cacgcggccg gagaccagct
     1081 cccggttcat gacgccatcg gaggcccgga gcaacaaccc gaccgccgtc acggaccccc
     1141 gttcgtcgac ccggaccggt acggcgtcga cgtagaggat cgggaggcgc tcgcgagccg
     1201 cgtcgagctc ctcgcgggtc agccaggatt cactgcggtg gagttcgagc gggctcatgt
     1261 cctgtttcta ccagtagacc cgtcctgggt tgaggatccc ccgagggtcg aacagcgact
     1321 tgaccgaccg ttgacgctcc accgacgcca ggccgacctc gtccggcagc cacctcgact
     1381 tcagcgaccc cacgccgtgc tccccggtga tggtgcctcc catcgccagg gcgaccccga
     1441 ccagctcgcc gaacgcggcc tcggcacgct cgcggctcgc atcgtcgagc gggtcgaaga
     1501 acaaggacgg gtgcaggttg ccgtcgcccc cgtgccccga catggtcagc tcgaccccgg
     1561 tgcgccggga gatctcccgg cccgcagcga tgagggcggt gagctgaccc acaggcacgc
     1621 agaggtcctc gacgaagtga gtccccttgg ccaccagggc ctgatgcaga acgcgacgcc
     1681 ccgcaagcag cgcctcgctc tccttcgtgt cgtcggccac cgccacctcg gtggccccgg
     1741 cagcctccag caccgcggca taccggtgca cgtcgtcggt ggtgtgaccc ggccggtcgg
     1801 actggacgat cagggccgcc tcgcagcccg gcgggaagcc gtagtccgcc agcgcctgga
     1861 tggcctcgac actggcgcca tcgagcagct cgagcaggct cggccgatgc cgctcccgac
     1921 gcagcgccac gatggctcga ctggccgcgt cgagcgagtc gaacgtggcc agcgcggtca
     1981 gggcagggtc gggtgcgggg accagcttca cggtgacctc cgtgaccacg ccaagggtcc
     2041 cctccgaccc gacgaacagc ccggtcaggt ctagccccgc cacccccttg gccgtgcggt
     2101 gtccggtgcg gatcacctct ccaccgggca gcaccacctg gagcgccctg acgtagtcgg
     2161 ccgtgacgcc gtacttcacg cagcacagcc cgcccgcgtt ggtcgccacg ttgccgccga
     2221 ccgtgcagaa cgcggacgat gccgggtccg gaggatagaa gagtccggcc tgggccgcgg
     2281 tcgccttgag ctgggccgtg accactccag ggccgaccac cgcgagggac tccacctggt
     2341 ccacctcgac cagctggtcg aggccctcga ggttgagcac gaccccgccc tcgatggcca
     2401 ccgagccccc tgccaggccg ctccgggcac cctggggtac gaccggcgtc cccgtctcct
     2461 gggcccaccg caggacctcg acgacgtcgc caaggtctcg cgcgcggatg acctcgaagg
     2521 tgcctggtgc cagcgccccg acggactcgt ccacggcata ccgggccttg acgtccggat
     2581 cggtcacccg gcgtccggcc accgcgtcag gaatcacagt caccgcccca ccctaggcgc
     2641 cgctagactg gcgccacagg cgtcgacccg gccatcaccg gtgagcctcc ggaagaacag
     2701 ctcccacagg tcgcaggcgg catgcgggag ctcactagac ccggacgggt gggcccgtca
     2761 acgcccttgg caagagcggt cgtatgccgc gtcgcccagc gggtggcgca cgtgcggcaa
     2821 gcgaggtggt accgcggtgg cgccggggag gtcccggtga cgtcgtcctc gtgcgagagc
     2881 acgcgagcga tgtgaggact gcccacacca tggcctatcc caaggtctct ttcgacccga
     2941 ccggttcgac cgatgcgacg accagtgccg tcgcgcccgt cacgggcgtg cccgcatccc
     3001 cgcggttccc cgagatcgag gagcgcatcc tcaagtactg ggacgaggac ggcacgttcc
     3061 tcgcgtccgt cgagaaccga gccagcggca ccaacggcga caacgagttc gtcttctacg
     3121 acgggccgcc gttcgccaac ggcctgccgc actacgggca cctgctgacc gggtacgtca
     3181 aggacctcat cccgcgctac cagaccatgc gggggcgacg ggtcgagcga cggttcggct
     3241 gggacaccca tggactgccg gccgagctcg aggccatgag ccagctcggg atcaagacca
     3301 aggacgagat cctcgagctg ggtatcgagg ccttcaacgc caagtgccgc gagtcggtgc
     3361 tgaagtacac cgacgagtgg cgcgagtacg tcacgcgtca ggctcggtgg gtcgacttcg
     3421 accacgacta caagacgctc aaccccgact acatggagag cgtgatctgg gcgttcaagg
     3481 cgctccatga caagggctac gtgtacgagg gcttccgcgt gctgccctac tgctggaacg
     3541 accagacgcc gctgtccaac cacgagctgc gcatggacga cgacgtctac cagatgcgcc
     3601 aggaccctgc ggtgacggtg ggcgtacgtc tggagaccgg agagctggcc ctggtctgga
     3661 cgactacgcc ctggacgctg cccgccaacc tcgccgtcat ggtgcatccc gacatcgact
     3721 acgtggtggt cgagacggac gtgccgaccg ggcgaaccga gcgctacctc atcggcgcgg
     3781 agcgactggc gtcctacgca agggaccttt tcggggatcc gcaggccgac gtcgagtcct
     3841 tcgtcatcga gcggctaacc ggtcgcgacc tgctcgggcg cagctacacc ccgccgttct
     3901 cgtactacct cggtcacgag aacgcgcacc gcgtggtcga ggcggacttc gtcacgacca
     3961 ccgacggcac ggggctggtg cacagcgccg gcgccttcgg tgaggacgac aagatcgtca
     4021 ccgaccgcga ggggatcgaa ccggtcatgc cggtcgggcc cgacggctgc ttcaccttcc
     4081 ccgtcacgca gtacgacggc atgctcgtgt tcgacgcgaa cctgccgatc atcgacgacc
     4141 tcaaggcggc aacgcggggg gaggccgcgc atggcgcggt caccgagggc accgtgctgg
     4201 tccggcggga gacctacgac cactcgtacc cgcactgctg gcgctgtcgg cagccgctga
     4261 tctacaaggc ggtctcgagc tggttcgtcg aggtgacgaa gttcaaggac cgcatggtcg
     4321 agctcaacga gcagatccag tgggtgcccg agcacatcaa gcatggccag ttcggcaagt
     4381 ggctggagaa cgcccgggac tggtcgatct cgcgaaaccg gttctggggc agcccgatcc
     4441 cggtctggaa gtccgacaac ccggagtacc cccgcatcga cgtgtacggc tcgttcgcgg
     4501 agctggagaa agacttcggg gtcaaggtcg acgacctgca ccggcccttc atcgaccgtc
     4561 tgatccggcc gaaccccgac gacccgacgg ggcagtcgac catgcgccgg gtcgaggacg
     4621 tcatggacgt gtggttcgac tcggggtcga tgtccttcgc gcagaaccac tacccgttcg
     4681 agaacgcgca gtggttcgac gaccacttcc cgggcgactt catcgtggag tacatcgggc
     4741 agacccgcgg ctggttctac accttgcacg tcctggcgac cgcgctcttc gaccggcccg
     4801 cgttctcggc ctgtgtctcg cacggcatcg tgctgggctc ggacggccag aagatgtcga
     4861 agtcgctgcg caactatccc gacgtgcgcg aggtgttcga ccgcgacggg gccgacgcga
     4921 tgcgctggtt cctcatgtct agccccatcc tgcggggcgg aaacctcgtg gtcaccgagc
     4981 aggggatccg tgacggggtg cgtcaggtga tcatcccgct gtggaacacc tggtacttct
     5041 tctcgttgta tgccaacgcc tatgccgctg gccccgatgg aggctcgtac gaggcgaagt
     5101 ggtccacctc ttcgaccgac acgctcgatc gctacctgct ggccaagctc ggccagttcg
     5161 tgcagacgat gcaggaccag ctcgacggct acgaggtcgc cagcgcgtgt gagacgaccc
     5221 gcggcttcct cgacctgctg acgaactggt acgtgcgccg gtcgcgggaa cggttctagg
     5281 acaccggtga ggggtccggg gccgagcagg cgttcgacac gctctacacc gccctggagg
     5341 tggtgtgccg cgttgccgca ccgttgctgc ccctgctcac cgaggagatc tggcggggcc
     5401 tcaccggcag ccggtcggtt caccttgcgg actggcccga cgcttcggac ctgccgaggg
     5461 acgatggcct ggtcgccggg atggaccgcg cccgcgagat ctgttcgtcg gcctcgtcgc
     5521 tgcgcaaggc gaacggcctg cgggtgcggc tgccgttgca ggatctcacc gtcgtcaccg
     5581 cgaatgccgc ctcactgacg gacttcggcg cgatcatcgc ggacgaggtc aacgtgcgct
     5641 cggtcaccct gcgggacctt agcgaggcca gcgagtccga cttcggtgtc tcccagcggc
     5701 tgaccgtcaa cgcccgcgcg gctggcccgc ggctgggtcg cgacgtccag caggccatca
     5761 agggggccaa gtcgggcgac tggtccgtcg gcgacgacgg ttcggtgcgg gccggtggtc
     5821 tggacctggt cgagggtgag tactcgctcg agactgtcgt cgacgccgac aaacagggca
     5881 gctccacggc gacggccatg ctgcccggcg gagggttcgt cgtgctcaac accgaggtca
     5941 cggcagagct ggcccaggag ggtctcgcgc gcgacatcgt ccgggccgtg cagcaggccc
     6001 gccgcgacgc cggactcgat gtctccgacc ggatttcgct gacggtcacc ggttcgcaag
     6061 cggtgtggga ggccacggtg gcgcatcagg cgctgatcgt ggaggagacc ttggcgacgc
     6121 agttcggctc cgcgccccag ctcgacgctt tgccgtcgcg ttccgacgtc gcggaggcga
     6181 ctgtcggcga cggcgaggcg gtgcggatca aggtgatgaa gctctgaggg gccggtcgtc
     6241 tggcacgaac tcgacgtcgc gggtgcgcat cggaccgccg ctcgggctgg catagggcgg
     6301 ggaccccttt gggtcggcat ccctctgggc gcccgttgcc agctctgcgc ggtctggcgg
     6361 tcggatgcgc agtccgtaac ggttggtcac tctcagccgg cctggctggg tcgggtcgcc
     6421 ggcgatcgtg acgtcgccgc ggtgatgggc gtcgtggtgg aacgggcaca ggctgacctg
     6481 acggtcgtag tccgtggccc cgccgtcggc ccaatggtcg aggtgatgga tctcgacgaa
     6541 cttggtggcg ctgcagccgg ggaagcgaca gccgcggtcg cggtcctcga tgagacgccg
     6601 ggtccgggcg ggaacgatgc gctggtcgcg gcccacgctc acgggtcggc cctgggtctc
     6661 ccacagcggt tggacgatgc cgtcacagct gaaccgccgc gccatggcgg gcgtgatggc
     6721 gccgccgcca ctgacccaag cgccctcggt gctgaggtgg acgtagacgc ggtagtgggc
     6781 cgcgcggttg gtggactcga tcgacgcgag cgaccgctgc gccatctccg cgagcgcatc
     6841 ggcatacgac ggaccaacgc tcgtctcacc acgcgccgcc gtgaagagcg cgtccttggc
     6901 ctccttgacc gcttgctcga cgagggcacc aacctcggcg ggcgcggagt agcgcaggtg
     6961 gaaccgaccc accgagtcgt agtgcatggt gagatccggt ctggcggccg cctggtcggc
     7021 tgcctcgtct ggggcatccg agtcgacgaa caccgacttc gacagggcat ggcggagctg
     7081 aggaaccgtg gcgctgcggg cgaagcgcgc catgcctgcc tggtggtctg cccgagcgtg
     7141 acgcgccagc acagcagcct ggtcgaccga cagctcaccg gtggccaggg cgtctgcggt
     7201 gtcgggaagc tcatcgcgcc ggcgggcgat gagcacgacc tcagtggccc tggcggggga
     7261 gagtccggcg cgaacgacga gccagtgctc cggggaccgg aacccgccgt caccccaatg
     7321 gccaccctcg atgagcccgg cagccacctc gaccagtgcg ccgtgcgctc ggttgagctg
     7381 gcccgcgata actgctgcgc gctcccacaa cgcctcagtc gtcgcctggt gggcgaccgc
     7441 tgcgggagtg gcggggctgg aggacatgcc tcaatcgtac agatgttcga agacgccaac
     7501 cgtgccttgt ccacacgtcg gggcgcgcgg accgctagtg gatgattgac cccatgcccc
     7561 ctgccccgga tgccgcccag cgcgaggccg cgcgaaacct cgaggttctc aagcggatgc
     7621 gcgaggccga agaggcgatc gtggcgcgcg c
//
LOCUS       DASYFY010000273         2053 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1438599, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000273 DASYFY010000000
VERSION     DASYFY010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438599"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VGN19_05580"
     CDS             complement(<1..181)
                     /locus_tag="VGN19_05580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HEV7195389.1"
                     /translation="MKLGLHIADFTWDGGPTALPQRLSEIAAGAEQAGYDRVSVMDHL
                     WQIQHLGPPEHEMLEA"
     gene            345..1670
                     /locus_tag="VGN19_05585"
     CDS             345..1670
                     /locus_tag="VGN19_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEV7195390.1"
                     /translation="MNVPDDDVTQRTRWHRLATLAWPGRPAHWSEVPARLQPTLVTVA
                     RLTAAAVVAYLLTLLLTGGVVDLTGPLTALLVVQASAFSTLKAGAVRVGAVLAGVMVA
                     SLLSTWIGLTWWSLGAAIAASLVLGKVLRLGDQALETPISAMLILGVSNHDIAAETRI
                     VNTLIGAAVGVAFSVVYPPAMPTGAARQALLRVVEAAASALDAAAEALEAGPVTRDQV
                     GEWIDRVRSANREVARATETIGHLKDSRRFNPRALGTVDVEPVLASALDPFEHCLLAI
                     RALFTLLLAELPPESAPEDPYGDELRSAFAVVLHDSADCLRAFGGLVIAESEGREEDT
                     EAALAESLDILRETQAILTELILVRAREDTSSWLLRGSILAAVEQVLSRLNLEDRARM
                     HQQWKEQQQQRRLVQLPKIVHDVLPHPDRPYPRGLQRGRMRRPRRRDER"
     gene            complement(1733..>2053)
                     /locus_tag="VGN19_05590"
     CDS             complement(1733..>2053)
                     /locus_tag="VGN19_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HEV7195391.1"
                     /translation="IPLTEQVNPAPACGQDTTPAASGAAAQPSSAALPASEKAVAAQW
                     EAWRVKQGFNASNPSPDTASPELMNRFTWYQAHNWAAPYPGDSTIYTPSQVPGGYIPS
                     ADGQ"
BASE COUNT          278 a          748 c          710 g          317 t
ORIGIN      
        1 aagcctcgag catctcgtgc tccggtggcc ccaggtgctg gatctgccag aggtggtcca
       61 tcacgctgac gcggtcgtac ccagcctgtt cggcacccgc cgcgatctcc gacaaccgtt
      121 gcggcagagc ggtggggccc ccgtcccagg tgaagtccgc gatgtgcagt ccgagcttca
      181 tgacactcct cagggacgct ggtggccgca cccaggacgc gacagtccgg acaggtgggc
      241 tcggtctgga ccatcctcca ccggatccgt cgcagtggca tctctcgagc tggcgactgt
      301 ccgctacgtt cagacgcacc ccagccccag ttggagcaga cagcatgaac gtcccagatg
      361 acgacgtcac ccagcgcacg agatggcatc ggctcgccac cctcgcctgg ccgggtcgcc
      421 cggcccactg gagcgaagtg cccgctcgcc tccaaccaac cctggtgacg gtcgcgcgcc
      481 tcaccgcggc cgcggtggtc gcgtatctgc tgacgctgct gctgacgggc ggggtggtcg
      541 acctgactgg accgctcacg gctctcctcg tggtccaggc ctccgccttc tcgaccctca
      601 aagcaggggc ggttcgagtc ggggccgttc tggccggcgt gatggtcgcg agcctgctgt
      661 cgacctggat cgggctcacg tggtggagcc tgggcgctgc catcgcggcg tcactggttc
      721 tgggcaaggt gctgcgactc ggagaccagg cgctggagac ccccatcagc gcgatgctca
      781 tcctcggggt cagcaaccac gacattgccg ccgagacccg catcgtcaac accctgatcg
      841 gtgccgcggt cggggtcgcc ttcagcgtcg tctacccacc ggcgatgccg acgggcgcgg
      901 cgaggcaggc gctgctccgc gtggtcgagg ccgcggcctc agccctcgat gctgccgctg
      961 aggccctcga ggcgggcccg gtgacccgcg atcaggttgg ggagtggatc gacagggtcc
     1021 gttcggcgaa ccgggaggtc gcccgggcca ccgagacgat cggccatctc aaggacagtc
     1081 gacggttcaa cccgcgggcc ctcggcaccg tcgacgtcga gcccgtgctg gcctcggccc
     1141 tcgacccctt cgagcactgc ctgctggcca tccgtgccct cttcaccctg ctcctcgccg
     1201 agctgccgcc cgagtcggcg cccgaggacc cctacggtga cgagctgcgc tcggcgttcg
     1261 cggtggtcct gcacgacagc gccgactgcc tccgcgcgtt cggcggcctc gtcatcgccg
     1321 agtcggaggg ccgcgaggag gacaccgagg ccgcgctggc cgagagcctc gacatcctcc
     1381 gggagaccca ggccatcctc accgagctca tcctcgtccg tgcccgcgag gacacctcgt
     1441 cgtggctgct gcgcggctcc atcctggccg cagtcgagca ggtgctgtca cgactcaacc
     1501 tcgaggaccg cgcccggatg caccagcagt ggaaggagca gcagcagcag cggcggctgg
     1561 tccagctgcc caagatcgtg cacgacgtcc tcccccaccc cgaccggccc tacccgcgcg
     1621 gcctccagcg cggccgaatg aggcgcccac gccgtcgcga cgagcggtag ggaaggcgtg
     1681 cgggccggcc gtggtcggcc ggcccgcacg tcgggctatc ccgcgctggg ggtcactgcc
     1741 cgtccgcgct ggggatgtag ccgcccggga cctgcgacgg cgtgtagatc gtcgagtcgc
     1801 ccgggtaggg ggcggcccag ttgtgcgcct ggtaccacgt gaaccggttc atcagctcgg
     1861 ggctcgcggt gtcaggggac gggttgctgg cgttgaagcc ctgcttgacg cgccaggctt
     1921 cccactgcgc cgcgacggcc ttctcggatg ccgggagtgc ggccgagctc ggctgcgccg
     1981 cagcgccgct cgctgccggc gtggtgtcct gaccgcacgc cggcgcaggg ttgacctgct
     2041 cggtgagcgg gat
//
LOCUS       DASYFY010000274         2177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1544020, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000274 DASYFY010000000
VERSION     DASYFY010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1544020"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VGN19_05595"
     CDS             <1..447
                     /locus_tag="VGN19_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3145 domain-containing protein"
                     /protein_id="HEV7195392.1"
                     /translation="CPHITWALESAVDTRLSIDWTRQPAGAALVRAEFPWTGAPGTGA
                     KLASALRGWDNLRYEVTEEPSPGSDGSRWSHTPRLGIHHTWTSASGDAVINEDRLREV
                     VRLSQGSPEAMAEMIDELLGADWDAELEPFRYAGDGAPVRWLHKVG"
     gene            complement(703..1131)
                     /locus_tag="VGN19_05600"
     CDS             complement(703..1131)
                     /locus_tag="VGN19_05600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195393.1"
                     /translation="MMVTSGVVVVDVGDDDDVLVVGRVVVLGLGAWLADATTPVAVGD
                     VGELVGVAVRALEREAVVAEVREVVVGVPATGAAPASTWAFWGSVAWSALPVAALLGI
                     MKRKTPTAVAPATQSSTKLGSGFQLPPLVTEWWWRPSSRT"
     gene            complement(1211..1762)
                     /locus_tag="VGN19_05605"
     CDS             complement(1211..1762)
                     /locus_tag="VGN19_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195394.1"
                     /translation="MVGPSGAGRARERVVVIDASHAARMKRAGWRHVLRTVASPRQVA
                     SIYLGLLAFILVLERDDPGGALVHLAYALVTALPATALVWGAMVVVVSARLGGWVDRE
                     AVPGRMLGVTVGPHSLRIRDHDTSVEMSYSAVDRVVQLGDIVIVRHSPAMWMLPVEVF
                     DPVDLGVLQARAGKVTAPHELVG"
     gene            complement(1980..>2177)
                     /locus_tag="VGN19_05610"
     CDS             complement(1980..>2177)
                     /locus_tag="VGN19_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005507474.1"
                     /note="FabF; beta-ketoacyl-ACP synthase II, KASII;
                     catalyzes a condensation reaction in fatty acid
                     biosynthesis: addition of an acyl acceptor of two carbons
                     from malonyl-ACP; required for the elongation of
                     short-chain unsaturated acyl-ACP; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HEV7195395.1"
                     /translation="EGVLTVLAIHHRLAPATINLDEFDPEIKLDVVHGEPRKLPEGDI
                     AALNNSFGFGGHNVAVVFTSV"
BASE COUNT          340 a          796 c          750 g          291 t
ORIGIN      
        1 tgcccgcaca tcacctgggc cctggagtcc gccgtcgaca ctcgcctgtc gatcgactgg
       61 acccgacagc cagccggtgc cgcactcgtc cgcgcggagt tcccgtggac aggtgcccca
      121 ggcaccggcg ccaagctcgc ctcggcgctg cgcgggtggg acaacctgcg ctacgaggtg
      181 accgaggagc ccagtccggg cagcgacggc tcgcgctggt cgcacacccc gcggttgggc
      241 atccaccaca cgtggacctc ggcgtcgggc gacgcggtca tcaacgagga ccggctccgc
      301 gaggtcgtcc gcctctcgca ggggtcaccc gaagcgatgg ccgagatgat cgacgagctg
      361 ctcggcgccg actgggacgc cgagctcgag ccgttccggt atgccggcga cggggccccc
      421 gtccgttggc tgcacaaggt cgggtagcca cctgtaacgc tgcgacctgc acgtttcggg
      481 gattcgggca ctcggtctgt agggtggcag gctgactgac cgaccctgga ggaagtttgt
      541 gacccgcccc acagcaatcg tggtggcgct ggccgcaggt ggtgtgggga cgctgctgtg
      601 gtgcgcctgg ctgatactgt ccgccgacct gaccctcgac acaggaatcg cagcctgggg
      661 actgtggctg ctcgttgctg ccgcggcgac caccctggtg gcctacgtgc gcgagctcgg
      721 acgccaccac cactccgtca ccaagggcgg cagctggaag ccgctgccga gcttggtgct
      781 gctctgggtg gcgggagcga cggccgttgg cgtcttcctc ttcatgatgc ccagcagcgc
      841 cgcgaccggt aacgccgacc aggccaccga cccccagaag gcccaggtcg acgcgggcgc
      901 ggctccggtc gccggaacgc cgacgaccac ctcccggacc tcagcgacca cagcctcgcg
      961 ttccaaggcg cggaccgcga cgcccaccag ctcgcccacg tcccccacgg cgacaggtgt
     1021 cgtcgcatcg gcgagccagg cccccaggcc aaggacgacg acccggccga ccaccagcac
     1081 gtcgtcgtcg tccccgacgt cgaccacgac gacgccgctg gtgaccatca ccctgccgca
     1141 gggccagccg aagccgacga agccgcctca cacgccctga gcgacggatg gcccgccctg
     1201 aagggcggcg tcaccccacg agctcgtgcg gcgccgtgac cttgccggcc cgggcctgca
     1261 gcacgccgag gtccacgggg tcgaagacct cgacgggcag catccacatc gccggcgagt
     1321 gccggacgat gacgatgtcg ccgagctgca cgacgcggtc caccgccgag tacgacatct
     1381 cgacagaggt gtcatggtcg cggatgcgca ggctgtgggg gcctaccgtg acgcccagca
     1441 tccggcccgg aactgcctca cggtcgaccc agccgccgag tcgcgcactg acgaccacga
     1501 ccatggcccc ccatacgagc gcggtagcgg gtagcgctgt gaccagtgcg taggccaggt
     1561 ggacgagggc gccgccgggg tcgtcgcgct ccagcaccag gatgaaggcg agaaggccca
     1621 ggtagatcga ggccacctgc cgcggcgatg ccacggtgcg caggacgtgt cgccacccgg
     1681 cccgtttcat ccgcgccgcg tgggacgcgt cgatcaccac cacccgttcg cgggctcgtc
     1741 ccgcgccgga tggtccgacc acgctgcccc ctcacactga gtggccacac gctaggcggg
     1801 cgcggtcagt gacgctggca ggccagggca gaactggccg aacggctgac tggccccgag
     1861 tccggggcgc tccccggacc gggagtcgcg ggcgcaggca tggtcgacga tccccgtccg
     1921 cagggcgact tcgcgtcccc cgccgccgca gcgacggggg ggacgcgaag ctcctatggt
     1981 cagacgctgg tgaagaccac ggccacgttg tggcctccga agccgaacga gttgttcagc
     2041 gcagcgatgt caccctcggg cagcttgcgg ggctcgccgt gcacgacgtc gagcttgatc
     2101 tcggggtcga actcgtccag gttgatcgtc gccggagcca gcctgtggtg gatggccagc
     2161 accgtcagga caccctc
//
LOCUS       DASYFY010000275         1880 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1123146, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000275 DASYFY010000000
VERSION     DASYFY010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1123146"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(187..>1880)
                     /locus_tag="VGN19_05615"
     CDS             complement(187..>1880)
                     /locus_tag="VGN19_05615"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEV7195396.1"
                     /translation="AVTVTPALALIMLAKAPIEKHVSPVVTWLQRGYQAALSRIVVHP
                     SQAYAAAATLLLAGIVVAPQLGQSLFPAFKERDLLMHWVSAPGTSIADMERTTAQVDR
                     ELQAIPGVRSVGSHIGQARLGEEVAGVNLGENWISLDPNVDYTDTVAKVQQVARNHPG
                     FYRDVQTYLDERVDEVLTGGKAPIIIRVFGDDQTVMKAKADEIEKLLRGIHGVVDPHV
                     DLVGLVPQLEITVDLAKAQANGLKPGDVRRAAAALVASEEVGNVFTKGKTYNVVVWST
                     PATRSDPTALANLPIDTPTGAHVRLGDVADISLKPTPNVIDRENDSRKIDVSADVSGV
                     DLGTVVAGINEQLAHVAFPQGYHAEVIGEYQERQAAQTRMFTAAILAAAAILLLLQLS
                     FGSWRLATIVFLTLPVALVGGLLAVWMDKGVVSLGSLVGFFTVFGIAARNGILLVNHC
                     QHLEQEEGVPFGPELVLRGAKERLSPILMTSLATGLALVPLVALGDRPGHEIEYPLAV
                     VILGGLVTSTLLNLFVVPSLLLRYGSPRNVPAPYPPTPQDALNPQDAALSAASTP"
BASE COUNT          276 a          553 c          741 g          310 t
ORIGIN      
        1 agatcagacg ccgtcagccc acctcatgaa tcaccggggc tagccgcagg ctctcgcccg
       61 catcgagcag gtcttccgag ccctggcccg cgcgcggtag ccgtcgtcga ccgaggaacc
      121 gcccccaact cgcgccggcc gccggaaaca gcgtggctca cgggcgctga cctatagggc
      181 accgcgtcat ggggtggagg cggctgagag cgcagcgtcc tgtgggttga gagcgtcctg
      241 cggtgttggc gggtatgggg cggggacgtt tcgggggctc ccgtaccgca gcaggaggga
      301 ggggacgacg aacaggttga gcagggtcga tgtgacgaga ccgccaagga tgacaacggc
      361 gagggggtat tcgatctcgt ggcctggccg gtcgccgagg gcgacgagcg ggacgagcgc
      421 gaggccggtt gccagggagg tcatgaggat cggtgagagg cgttccttgg caccgcgtag
      481 gacgagttcg gggccgaagg ggacgccctc ttcctgttcc aggtgctggc agtggttgac
      541 cagcaggatc ccgttgcggg cggcgatccc gaagacggtg aagaagccga cgagtgagcc
      601 gagcgagacg acgcccttgt ccatccagac cgcgagcagc ccgccgacga gggccacggg
      661 gagggtgagg aacacgatgg tggcgagtcg ccagctgccg aaggacagct gcagcagcag
      721 gaggatcgcc gccgcggcga ggatcgcggc tgtgaacatg cgggtctggg cggcctgccg
      781 ctcctggtac tcgccgatga cttcggcgtg gtagccctgc gggaatgcca cgtgcgcgag
      841 ctgctcgttg atgccggcga cgacggtgcc gagatccact ccgctgacgt cggcgctgac
      901 gtcgattttg cgggagtcgt tctcgcggtc gatgacgttg ggggtgggtt tgaggctgat
      961 gtcggcgacg tcgccgagcc ggacgtgggc gccggtgggc gtgtcgatgg ggaggttggc
     1021 cagggctgtc gggtcgctgc gggtggccgg ggtgctccag acgacgacgt tgtaggtctt
     1081 gcccttggtg aagacgttgc cgacctcctc gctggcgacc agggccgcgg ctgcccggcg
     1141 gacgtcgccg ggtttgaggc cgttggcctg ggccttggcc aggtccacgg tgatctcgag
     1201 ctggggcacg agcccgacga ggtcgacgtg tgggtcgacg actccgtgga tgccgcggag
     1261 cagcttctcg atctcgtcgg ctttggcttt catgacggtt tggtcgtcgc cgaacactcg
     1321 gatgatgatg ggtgccttgc cgccggtgag gacctcgtcg acgcgctcgt cgaggtaggt
     1381 ctggacgtcc cggtagaagc cggggtggtt gcgggcgacc tgctggacct tggcgaccgt
     1441 gtcggtgtag tcgacgttcg ggtcgaggct gatccagttc tcgccgaggt tgacgccggc
     1501 cacctcctcg ccgagtcggg cctggccgat gtgcgagccg acactgcgca cgcccgggat
     1561 cgcctgcagc tcgcggtcga cctgcgcggt ggtgcgttcc atgtcggcga tggaggtgcc
     1621 cggggcggag acccagtgca tcagcaggtc gcgttccttg aacgccggga acagggactg
     1681 ccccagctgg ggggccacga cgatgcccgc cagcaggagg gtcgctgccg cggcatacgc
     1741 ctggctgggg tggacgacga tccgggacag ggccgcctgg tagccccgtt gcagccaggt
     1801 gacgaccggg gagacgtgct tctcgatcgg ggccttggcg agcatgatca gggccagcgc
     1861 cggtgtcacg gtgacggcaa
//
LOCUS       DASYFY010000276         2145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_230129, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000276 DASYFY010000000
VERSION     DASYFY010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230129"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2145)
                     /locus_tag="VGN19_05620"
     CDS             complement(<1..>2145)
                     /locus_tag="VGN19_05620"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195397.1"
                     /translation="AAGLSGLDELAAGLEPLRASALRAEPLTLVDSLLEVLYDTAVPL
                     TLVLDDLQHLAESKASVRVIDHVLRWAPANMRIAIAARVVPPLRVQRLRLEDRLEYIA
                     HDELTFSRGETADAVRAAGLRLDPDTVETIHTVTDGWPAGVRMAILAARQSGRPRQVP
                     MQLRRDQALADYLATEVLASLSDDLRSFVLDSCLDEQVCSSLIDTIRGTHGSEAYLEQ
                     CLADGLFLTRGDVSSQEAWYHWHPLFAAHIRRRLATDLPERAMALHAAAAEWWAPVDP
                     PTAIRHAMAAGNEEMASRIFAERWSDLFLEGRVDAVLDAVAQLPEVAVYSSEAHLAKA
                     LILGQRGSHDAARSELEAARAAADPLPEAALARLEDRMAIVELLRTGYDQGLGSAVES
                     GAAVLDRLDRSQRAPDPAIRAAVQVFVGMGEARLQSHPKLPLEMLRSSAATAHEAGLL
                     ALELTALAESCIPAIGEGNLTEIRDLAAGVLVRAEERGWVGLVTLAPAVAYLGWFDYW
                     RGNLRDAQVLLQRSLSMVLPFDWELRGLILNFLTKTALSLGDLRTARRNAAEIASMIE
                     AGHLAPSWPSMLAGLEGLILLAKGDISDAVALATRPPSSPEYRLAPTLRAKVLLLAGR
                     PELALAELDRVPPPDGFVQIECLSRCIRAEAHAALGQMDAAHVSLELALAAAEPDQLY
                     GPFLGAGDAMTELLKTHLRHGTAHPTAVTHVLG"
BASE COUNT          337 a          700 c          796 g          312 t
ORIGIN      
        1 ccgagcacgt gggtcactgc tgtgggatga gcggtgccgt ggcgcaggtg ggtcttgagc
       61 agctccgtca tggcatcgcc ggcgccgagg aagggcccgt agagctggtc cggctcggct
      121 gccgcgaggg cgagctcgag tgacacgtgg gctgcgtcca tctgccccag ggctgcatgc
      181 gcctcggcac ggatgcatcg tgagagacac tcgatctgca cgaaaccgtc ggggggcggg
      241 acccggtcga gctcggcgag tgccagctcg gggcgcccgg caagcaggag caccttggcc
      301 cggagggtgg gtgccaaccg gtactccggg gagctggggg gccgggtggc gagagccacc
      361 gcgtcgctga tgtctccctt cgccaggagg atcagcccct cgaggccggc cagcatggag
      421 ggccacgacg gtgccaggtg cccggcctcg atcatggacg cgatctccgc tgcgttgcgt
      481 cgcgctgtgc gcaggtcgcc caacgacagg gcggtcttgg tgaggaagtt gaggatgagt
      541 ccgcgcagct cccagtcgaa ggggaggacc atggagaggc ttcgctgcag caggacctgc
      601 gcgtcgcgca agttgccacg ccagtagtcg aaccagccga gataggcgac agcaggagcc
      661 agcgtcacca ggcccaccca gccgcgttct tcggcccgca cgagcacgcc ggcggcgagg
      721 tcgcggatct cggtcaggtt tccctcgccg atggcaggga tgcacgactc ggcgagggct
      781 gtcagctcga gggccagcaa gccggcctcg tgtgccgtgg cggctgacga tcggagcatc
      841 tccaggggca gcttgggatg gctctggagc cgggcttctc ccatgccgac gaacacctgg
      901 acggcggccc ggatggcagg atcgggcgct cgctgactcc ggtccagccg atccagcaca
      961 gcagcgccgg actcgaccgc ggagccaagc ccctggtcgt accccgtacg cagcagctcc
     1021 acgatggcca ttcggtcctc gagtcgggct agcgcggcct ccggaagggg gtccgctgca
     1081 gcccgcgcgg cttcgagctc cgagcgggca gcgtcatggc tgccccgctg tcccaggatc
     1141 agggccttcg cgaggtgcgc ctcgctggag tagacagcga cctccgggag ctgcgccaca
     1201 gcgtcgagca ccgcatcgac gcgtccctcg aggaagaggt cggaccagcg ttctgcaaag
     1261 atcctcgagg ccatctcctc gttgccggcc gccatcgcat gtcggatcgc ggtcggcggg
     1321 tcgacagggg cccaccattc cgcagcagcc gcgtgcaggg ccatggctct ctccggcaga
     1381 tcggtcgcca gacgtcgacg gatgtgcgct gcgaacagcg gatgccagtg gtaccaggcc
     1441 tcttgggacg agacgtctcc gcgggtgagg aacaggccgt cggccagaca ctgctcgaga
     1501 taggcctccg agccgtgcgt gccccgaatg gtgtcgatga gggacgagca gacctgctcg
     1561 tcgaggcagc tgtcgaggac gaagctcctt aggtcgtcgc tgagggaggc gagaacctcc
     1621 gtggcgaggt agtcggccag cgcctggtcg cgtcgcagct gcatcggcac ctgtcggggt
     1681 cggccgctct gacgggcggc gaggatcgcc atgcggaccc cggccggcca accgtccgtc
     1741 acagtgtgga tcgtttcgac ggtgtccggg tcgaggcgaa gaccggcggc ccgtacggcg
     1801 tcggccgtct cgccgcgact gaacgtgagc tcgtcgtgcg cgatgtactc gagacggtcc
     1861 tccagccgaa gacgctgcac ccgcagcgga ggcacgaccc gtgccgcgat cgcgatgcgc
     1921 atgttggcgg gtgcccatcg gagcacgtgg tcgatgacgc gcaccgaggc cttcgactcg
     1981 gcgaggtgct ggaggtcgtc gaggaccagg gtcaacggga cagcggtgtc gtagagcacc
     2041 tcgaggagcg agtcgacaag ggtgagcggc tccgctcgca gcgccgacgc cctcaacggt
     2101 tcgaggccgg cggcgagctc gtcgagcccc gacaggccgg ctgcg
//
LOCUS       DASYFY010000277         7444 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_546043, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000277 DASYFY010000000
VERSION     DASYFY010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7444
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546043"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..1367
                     /locus_tag="VGN19_05625"
     CDS             63..1367
                     /locus_tag="VGN19_05625"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195398.1"
                     /translation="MTTLRTSRPDTLTDRLSMAQILDLVTDGAVPLRFTAFDGSTTGP
                     QDAAYGLHLNNPRGASYLATAPGDLGMARAYVSGDLDLVGVHPGDPYELLNVLGDFRF
                     RLPSPRAAAAIARSLGIELLKPPPPPPQEALPRWRRVAEGMRHSKTRDAEAIHHHYDV
                     SNAFYERVLGPSMTYTCACYPHEGATLEEAQENKYRLVFDKLRLKEGDRLLDIGCGWG
                     GMVRYAARHGVRVIGATLSGEQAAWAQEAIAREGLGHLAEVRHSDYRDVRETGFDAVS
                     SIGLTEHIGVKNYPAYFTFIKDRLRVGGLVLNHSITRPTNRREATGAFIDRYVFPDGE
                     LTGSGTIISAAQDVGLEVRHEENLREHYARTLAAWCANLTDNWDASVAEVGESTAKVW
                     GLYMAGSRVGFERNGVQLHQVLAVKLDPQGGAGLPLRPWWDA"
     gene            complement(1394..3328)
                     /locus_tag="VGN19_05630"
     CDS             complement(1394..3328)
                     /locus_tag="VGN19_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_function: GO:0003997 - acyl-CoA oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEV7195399.1"
                     /translation="MSDLADTLRTSLDGRWAAIRDESRAQLDPEQFAPPREWLSLEDY
                     RARVAEQVQAIAATGHPARGFTVEMGGNGDLGGSVTAFEMLGHADLSLMVKAGVHWGL
                     FGGAVANLGTERHHAAYLPSIIDASLPGCFAMTETGHGSDVQSLGTTATYDPATDELV
                     VHTPDLRSRKDYIGGAARDGRLAAVFAQLVTGGESHGVHCVLVPIRDEGGSSLPGVTI
                     GDCGAKAGLAGVDNGRLSFDQVRVPRTNLLNRYGDLDEHGTYTSPIENQTGRFFTMLG
                     TLVRGRISVAGGAGAATRTALTLALTYAGHRRQFAPPGADEEVLLLDYRTHQRKLLPA
                     LAKSYALMFAQNELVSLMHDVQTAGDQAKEHDQRELEARAAGIKAVATSHATTTIQTC
                     REACGGAGYLAVNRLPSLKADTDVFTTFEGDNTVLLQLVAKGLLTDYRDSFGDLDTLG
                     MVRFGAKQFAGVVIERTAARGLIQRLIESAPGRDSESGPLDRGWQLELFEDRERHLLE
                     TVAMRLRKASKPDADLFTVFNNAQDHVVEAARAHVDRTILESFVAAIEACTDVNATAM
                     LGQVCDLYALHSIEQDKGWFLEHGRITPARSKQVTAAVNDLCAALRPYAQDLVDAFGI
                     PQAWLGSELLFSPEGAPVGG"
     gene            complement(3325..4035)
                     /locus_tag="VGN19_05635"
     CDS             complement(3325..4035)
                     /locus_tag="VGN19_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195400.1"
                     /translation="MTTTTTTSGATAAADGRSTRWDQHRAARRRELVESTLRAIREHG
                     AAVGMDDIASAAGTSKTVVYRHFADRQGLYAAVCESVDTRILSTIGRALGSGNGDLAT
                     VQTTPRDLVAAAIDSYLALVEKDPEVYRFVVTAPLLDRPGGDPAAPVTDHIAAQLSQL
                     ITAALAAQGRDVSVAPVWGAGLVGMVRAAADQWLAHSPGSGQLSRGALTEQLTDLAWG
                     GLSVAWPSPSPSAPQEDS"
     gene            4125..5429
                     /locus_tag="VGN19_05640"
     CDS             4125..5429
                     /locus_tag="VGN19_05640"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEV7195401.1"
                     /translation="MAPSSRSSAQPRRAAVIGGNRIPFARANGPYAKASNQDMLTAAL
                     EGLVARHGLAGEQVGEVAAGAVLKHSRDFNLTRESVLGSSLSPTTPAYDVQQACGTGL
                     EAAILVANKIALGQIDSGVAGGTDTASDAPIAVNEGLRETLLTLNRAKTPAQRLKALT
                     GLRPGQLLPEIPRNVEPRTGLSMGDHMAQTAAQWGITRQAQDELAAASHHNLAAAYDR
                     GFFDDLVTPFLGQTRDQNLRPDSSVEKLAKLKPVFGTGPDTTMTAGNSTPLTDGASAV
                     LLGSDEWAASHGLPVLAHLVDAQTAAVDYVTGREGLLMAPAYALPYLLERQGMKLQDF
                     DLVEIHEAFASTVLCTLAAWESDEFCRDRLGLDAPIGALDRTKLNVNGSSLAAGHPFA
                     ATGGRIVASLAKMLHEKGSGARGLISICAAGGQGVMAILEAA"
     gene            5431..6774
                     /locus_tag="VGN19_05645"
     CDS             5431..6774
                     /locus_tag="VGN19_05645"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HEV7195402.1"
                     /translation="MAGAYAGLVNSAVGKKLATQLGLPRPTTLRRYAVGGPLIEGPVL
                     VGGLGEAAVASRVRELLKAEGVDTVEEVASGYRVGAVVADFTAITTPAELDALRALVA
                     SAMKGLAPSGRVIVIGRDHRQSATVAQAAARGALEGFTRSVAKELRAGATANLVLVDE
                     GAEGNADACVRFLMSGRSAYVDGQVVRVGAGSPSEPADWARPLQGKVAVVTGAARGIG
                     AAIAEVVARDGATVVCVDIPGAGDALTRTANRVGGTALQLDVTADDAGQRILDHATSR
                     HGGLDIVVHNAGITRDRLLANLDEDRWRSVLDVNLGAILRMNETLLGVDGVREGGRLV
                     LVSSIAGIAGNRGQTNYAASKAGVIGLVESLAQDEDLRARRITVNAVAPGFIETEMTA
                     KVPFATREVGRLLNSLSQGGLPVDVAETIAWFSQDANAAVTGNVVRVCGQSLLGA"
     gene            6776..>7444
                     /locus_tag="VGN19_05650"
     CDS             6776..>7444
                     /locus_tag="VGN19_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195403.1"
                     /translation="MPPNNHADHADDISSTLRSVTSEPSLPRLFAQAALTQRGRGGEL
                     PAYRLRRSGVVVDREHLLSYQRICGFTGGDVLPHSYPHLLGFPLQVQLMTDHAFPLPL
                     PGLVHLENRITARRRLTADDLLDVTVGAEQLRPHAKGTVVDLVTVVDVGGEPVWEGRS
                     TYLRRGRGGDDAVDVEPRPVAPQLPPAAPVGVLRVPEGLGRTYAAVSGDVNPIHLHAL
                     SARVM"
BASE COUNT         1089 a         2591 c         2635 g         1129 t
ORIGIN      
        1 aaacgccagt acgaccccca gtcccggctg ctcgacctct actccaaggc ggtgctacgc
       61 aaatgacgac ccttcggacc tctcggccgg acaccctcac agaccggctg tcgatggcgc
      121 agatcctcga cctcgtgacc gatggtgccg tgccgctgcg attcacagcc ttcgacggct
      181 ccaccaccgg cccgcaggac gcggcatacg gactgcactt gaacaacccg cgtggggcca
      241 gctatctggc cacggcgccc ggggacctcg ggatggcccg cgcgtacgtg tccggcgacc
      301 tcgacctggt cggggtccac ccgggtgacc cgtacgagct gctcaacgtg ctgggtgact
      361 tccgcttccg gctcccctcg ccgagggccg ccgcagccat tgcgcggtcg ttgggcatcg
      421 agctgctcaa gccgccaccg ccgccgcccc aggaggcgct accccgctgg cgcagggtgg
      481 ccgagggtat gcggcacagc aagacccgcg acgccgaggc gatccaccac cactacgacg
      541 tctcgaacgc cttctacgaa cgggttctcg ggccgtcgat gacctacacc tgcgcgtgct
      601 acccgcatga aggcgcgacg ctggaggagg ctcaggagaa caagtaccgg ctggtgttcg
      661 acaagcttcg cctcaaggag ggcgaccggc tgctcgacat cggctgtggc tggggaggca
      721 tggtccggta tgccgcgcgc cacggcgtgc gagtcatcgg ggccacgctg tcgggcgagc
      781 aggccgcctg ggcccaagaa gccatcgcgc gcgaaggcct gggtcacctc gccgaggtgc
      841 gccacagcga ctaccgcgac gtgcgcgaga ccggcttcga cgccgtctcc tcgatcggcc
      901 tgaccgagca catcggggtc aagaactacc cggcctactt cacgttcatc aaggatcggc
      961 tgcgggtggg cgggctggtc ctgaaccact ccatcacgcg gcccaccaat cggcgcgagg
     1021 cgaccggcgc gttcatcgac cggtacgtct tcccggacgg cgagctcacc ggctcgggca
     1081 ccatcatcag cgccgcgcag gacgtcggtc tcgaggtgcg ccacgaggag aacttgcggg
     1141 agcactacgc ccgcaccttg gcggcctggt gtgccaacct cacggacaac tgggatgcct
     1201 cggtcgcgga ggtcggcgag tcgacggcca aggtgtgggg cctctatatg gcggggtcgc
     1261 gggtcggctt cgaacgcaac ggcgttcagc tccaccaggt gctggccgtg aagctcgacc
     1321 cgcagggtgg ggctggcctg ccgcttcgcc cttggtggga cgcctagctg cgccgacggc
     1381 cgacggacct gccctagccg ccgaccggcg cgccctcggg tgagaacagc agctcgctac
     1441 ccagccacgc ctgagggatg ccgaaggcgt ccacgaggtc ttgggcgtac ggacgcagcg
     1501 ccgcgcacag gtcgttgacc gctgcggtga cctgcttgct gcgtgccggg gtgatccggc
     1561 cgtgttcgag gaaccatccc ttgtcctgct cgatgctgtg cagcgcatag aggtcgcaga
     1621 cctgcccgag catggctgtc gcgttgacat ccgtgcaggc ttcgatcgct gcgacgaacg
     1681 actcgaggat ggtccggtcg acgtgggcac gcgcggcctc caccacgtgg tcctgcgcgt
     1741 tgttgaagac cgtgaacagg tcggcatccg gcttgctcgc cttgcgcaac ctcatcgcga
     1801 cggtctccag caggtggcgc tcgcggtcct cgaacagttc gagctgccag ccgcggtcga
     1861 gcgggccgct ttcgctgtcc cgaccgggtg cgctctcgat gagccgctgg atcaggccgc
     1921 gcgcggcggt ccgttcgatg acgacgccgg cgaactgctt ggccccgaac cggaccatgc
     1981 ccagcgtgtc gaggtcgccg aaggagtctc ggtagtccgt gagcagtccc ttcgccacga
     2041 gctgcaggag cacggtgttg tcgccctcga aggtggtgaa gacgtcggtg tcggccttca
     2101 gcgagggcag gcggttcact gccaggtatc ccgcgccgcc acaggcctca cggcaggtct
     2161 ggatcgtggt ggtggcgtgg ctggtcgcga ctgccttgat ccccgcggcc cgtgcctcga
     2221 gctcacgctg gtcgtgttcc ttggcctggt cgcccgccgt ctggacgtca tgcatcaggc
     2281 tgaccagctc gttctgggcg aacatcaggg cgtacgactt ggccagcgcg ggcagcagct
     2341 tgcgctggtg ggtccggtag tccaggagca gcacctcctc gtccgctccg ggaggtgcga
     2401 actggcggcg gtgcccggca tacgtcaggg cgagggtgag ggcggtccgg gtggccgcac
     2461 ccgcgccgcc ggccacgctg atccgcccgc gcaccagggt cccgagcatc gtgaagaacc
     2521 ggccggtctg gttctcgatg ggagaggtgt aggtcccgtg ctcgtcgagg tctccgtacc
     2581 ggttgagcag gttcgtgcgg gggacccgca cctggtcgaa gctcagtcgc ccgttgtcca
     2641 cgcccgcgag gccggccttg gcgccgcagt cgccgatggt gacccccggc agggaactgc
     2701 cgccctcgtc gcggatcggg accagcacgc agtgcacgcc gtggctctca ccgccggtca
     2761 ccagctgggc gaagaccgcc gccagacgcc cgtctcgtgc agcgccgccg atgtagtcct
     2821 tgcgggatcg caggtccggg gtgtgcacca cgagctcgtc ggtggccggg tcatacgtgg
     2881 ccgtggtgcc gagggactgc acgtccgacc cgtggccggt ctccgtcatc gcgaagcacc
     2941 ccggcaggct cgcgtcgatg atggacggca ggtatgccgc gtggtggcgc tcggtgccga
     3001 ggttggcgac ggcgccgccg aacaggcccc agtggactcc ggccttgacc atcagcgaca
     3061 ggtctgcgtg gccgagcatc tcgaaggccg tgaccgagcc acccaggtcg ccgttgccgc
     3121 ccatctccac ggtgaaccct cgagcagggt gaccggtggc ggcgatggcc tggacctgct
     3181 cggcgacccg ggcccggtag tcctccaggc tcagccactc gcgaggcggc gcgaactgct
     3241 cggggtcgag ctgcgcgcgg ctctcgtcgc ggatcgcggc ccaccggcca tcgaggctgg
     3301 tgcgcagtgt gtcggccagg tcgctcatga gtcctcctgc ggggcggatg gggatgggga
     3361 cggccaggcg acggagagcc cgccccaggc cagatcggtg agctgttcgg tcagggcgcc
     3421 acgggacagc tggcccgatc cgggggaatg ggcgagccac tggtcggcgg ccgcccggac
     3481 catacccacc aggcccgcgc cccacacggg cgcgacgctg acatcgcgtc cttgggcggc
     3541 gagagcggcg gtgatgagct gcgacagctg agcggcgatg tggtcggtga ccggcgccgc
     3601 cgggtcgccg ccaggtcggt ccagaagggg tgcggtcacg acgaaccggt agacctccgg
     3661 gtccttctcg accagcgcga gataggagtc gatggccgcg gcgacgaggt ctcgaggcgt
     3721 ggtctgcacg gtggccagat cgccgttccc agagcccagg gcgcggccga tggtgctcag
     3781 gatccgcgtg tccacgctct cgcacaccgc ggcatacagg ccctggcggt cggcgaagtg
     3841 ccggtacacc acggtcttgg acgtgcccgc ggcggaggcg atgtcatcca tgccgacggc
     3901 ggccccgtgc tcccggatgg cgcgcagggt ggactccacg agctcacggc gccgggcggc
     3961 gcggtgctgg tcccagcggg tgctgcggcc gtcggcagca gctgtggctc cgctcgtggt
     4021 cgtggtcgtg gtcacagtca gtgacggtag caggtactag cggtacctgc taccgtcagt
     4081 atcagttatc tacgacacca ccccgagcac ctcaggagca ctccgtggca ccgtcatccc
     4141 gctcgtccgc ccagccgcgt cgcgctgccg tcatcggcgg caaccgcatc ccgttcgccc
     4201 gcgccaacgg gccgtacgcc aaggcgtcga accaggacat gctcaccgca gcgctcgagg
     4261 ggctggttgc ccgccacggc ctggcggggg agcaggtcgg cgaggtcgcg gccggagcgg
     4321 tcctcaagca cagccgtgac ttcaacctga cccgtgagtc cgtgctgggc tccagcctgt
     4381 cgccgacgac ccccgcctac gacgtgcaac aggcctgcgg cacggggctg gaagcggcca
     4441 tcctcgtggc gaacaagatc gccctggggc agatcgactc cggcgtggcc ggtggcacgg
     4501 acaccgcttc ggatgcgccc atcgccgtca acgagggcct gcgcgagacc ctgctcaccc
     4561 tcaaccgggc gaagaccccc gcccagcggc tcaaggccct cacgggcctt cgccccggcc
     4621 agctgctgcc cgagatcccg cgcaacgtcg agccgcgcac gggtctgtcc atgggggacc
     4681 acatggccca gaccgccgcc cagtggggca tcacccggca ggcccaggac gagctcgcag
     4741 cggcctcaca ccacaacctt gccgccgcct acgatcgcgg attcttcgac gaccttgtca
     4801 cgccgttcct ggggcagacc cgggaccaga acctgcggcc cgactcctcg gtggagaagc
     4861 tcgcgaagct caagccggtg ttcggcaccg gcccagacac cacgatgacc gccggcaact
     4921 cgacccccct gaccgacggc gcctcggccg tgctgttggg ttccgacgag tgggctgcgt
     4981 cgcatggcct gcctgtgctc gcccacctgg tggacgcgca gacggcagct gtggactacg
     5041 tcaccgggcg ggaagggctg ctcatggcgc cggcgtacgc cctgccctac ctgctcgagc
     5101 gacagggcat gaagctccaa gacttcgacc tcgtggagat ccacgaggcg ttcgcctcga
     5161 cggtcctgtg caccctggcg gcctgggaga gtgacgagtt ctgccgggac cggctgggcc
     5221 tggacgctcc gatcggggcc ctggaccgga ccaagctgaa tgtcaacggg tcctcgctgg
     5281 cggccggaca tccgttcgcc gccaccggcg gccgcatcgt cgcctcgctg gcaaagatgt
     5341 tgcacgagaa gggctccggt gcgcgcgggc tgatctccat ctgcgctgcc ggcggtcagg
     5401 gcgtcatggc gattctcgag gcggcctgac atggcgggcg cctacgcagg gctggtcaac
     5461 agcgcggtcg gcaagaagct ggccacccag ctgggcctgc cccgcccaac caccctgcgg
     5521 cggtatgccg tgggcggccc gctgatcgaa gggcccgttc tcgtcggggg tctcggtgag
     5581 gctgccgtcg cctcgcgggt tcgcgagctg ctcaaggccg agggcgtcga caccgtcgag
     5641 gaggtcgcct cggggtaccg ggtcggtgcc gtcgtcgccg acttcaccgc catcacgacc
     5701 ccagcagagt tggacgcctt gcgcgcactg gtcgcgtcgg ccatgaaggg tctggcaccg
     5761 agtggtcgag tgatcgtcat cggtcgcgac caccggcagt cggccaccgt ggcacaggcc
     5821 gccgcccggg gggctttgga aggcttcacc cgctccgtcg ccaaggagct tcgcgccggg
     5881 gctaccgcga acctcgtgct ggtcgacgag ggcgccgagg gcaacgccga cgcctgcgtg
     5941 cggttcctga tgtccgggcg gtcggcctat gtcgacggcc aggtggtgcg ggtcggggca
     6001 ggttcgccga gtgagccggc cgactgggcg cgtccgctcc agggcaaggt cgccgtggtg
     6061 accggtgcgg cccgggggat cggagcagcc atcgccgaag tcgtcgcgcg cgacggggcc
     6121 acggtggtct gtgtggacat cccgggggct ggcgacgcgc tcacccgcac cgcgaaccgg
     6181 gtcggtggca ccgccctgca gctggacgtc accgcggacg atgccggtca gcggatcctc
     6241 gaccatgcga cgtcacggca cggcgggctg gacatcgtcg tccacaacgc cggcatcacc
     6301 cgcgacaggc tgctcgccaa cctggacgag gaccgctggc ggtcggtact cgacgtcaac
     6361 ctcggtgcca tcctgcgtat gaacgagacc ctcctggggg tcgacggtgt ccgcgagggc
     6421 ggacgcctgg tgctggtgtc ctcgatagcg gggatcgcgg gaaaccgcgg ccagaccaac
     6481 tacgccgcgt ccaaggcggg cgtgatcggc ctcgtggagt cgctggctca ggacgaggac
     6541 ctccgagctc gccgcatcac cgtcaacgcg gtggctcccg gattcatcga gaccgagatg
     6601 acggccaagg tgccgttcgc gacgcgcgag gtcgggcgtc tgctgaactc gctgagccag
     6661 ggtggactgc ccgttgacgt cgccgagacg atcgcctggt tcagccagga cgccaacgcc
     6721 gcagtcaccg gcaacgtggt gcgggtctgc ggccagagtc tgctcggggc ctgaggtgcc
     6781 acccaacaac cacgccgacc acgccgacga catcagcagc accctcagga gcgtcacgag
     6841 cgagccttcc ctgccccgcc tgttcgccca ggcggcactc acccagcgtg ggcgcggtgg
     6901 tgagcttccg gcataccggc tgcgccgtag cggggtggtc gtcgaccgcg agcacctgct
     6961 gtcgtaccaa cggatctgcg gcttcaccgg cggggacgtc ctgccgcact cgtatccgca
     7021 tctgctcggg ttcccgcttc aggtgcagct catgaccgac cacgcgttcc cgctgccact
     7081 acctgggctg gtccacctgg agaaccgcat caccgcgcgt cggagactga cggctgacga
     7141 cctcctggac gtcacggtcg gcgccgagca gctgagacca catgccaagg gcaccgtggt
     7201 cgacctggtg accgtggtcg acgtcggggg cgagccggtg tgggaagggc gcagcacgta
     7261 cctgcggcgt ggccgtggcg gcgacgatgc cgtcgacgtc gagccgcgac cagtcgctcc
     7321 gcagctgccg ccagccgcac cggtgggcgt gctcagggtg ccggagggtc tgggtcgtac
     7381 gtatgccgca gtgtcgggtg acgtgaaccc gatccatctg cacgcgttgt cggcgcgggt
     7441 gatg
//
LOCUS       DASYFY010000278         5504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1018720, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000278 DASYFY010000000
VERSION     DASYFY010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5504
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1018720"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VGN19_05655"
     CDS             complement(<1..427)
                     /locus_tag="VGN19_05655"
                     /inference="COORDINATES: protein motif:HMM:NF013255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7195404.1"
                     /translation="MAARTSVDLKVAVVGAGGLVGSALVPALADSCNLVLMDRRGDRK
                     AAIRAVDARNVRRLARAIEGCDAVVDLAADAHWQAPWTTVYENNIPLAVAVLESARLA
                     GVPTVVHASSNQVAAGYERDEPFASIVAGQVEALDPERVR"
     gene            607..1014
                     /locus_tag="VGN19_05660"
     CDS             607..1014
                     /locus_tag="VGN19_05660"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEV7195405.1"
                     /translation="MISETIDGETIILHLGNGFYFSAGGAGAQAWSLLSQAVPVQATA
                     AVLSRHYDTDGVDVEAAVADFVDQLNMEGLLVPADGAAVPEVVAPEARLAWQPPSLSK
                     FTDMEDLLLLDPVHEVSPSQGWPYAASSNGGPA"
     gene            975..2090
                     /locus_tag="VGN19_05665"
     CDS             975..2090
                     /locus_tag="VGN19_05665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195406.1"
                     /translation="MAVCRVLERRAGVTIAALTARGGAPAIAKDDLAASFAQDYDDSA
                     SEAWLALGGRRVRLRFASSRTRHLLESFAHLVTDEQESADLTICVWDSPRGASLTLPA
                     SDPQAPRGTRMVWADDQLRACYQPGQDTLSVLSADGTAAWFWCADARELPYWEHAAPL
                     RLILSWWLAAQGANLVHGAAVGRAEGGALIVGRGGSGKSTTALLSLLGGLVYASDDYV
                     VVERDYRRHGPYIHSAFGSGKLDNAQCLRFPQLAPAIVNPDRVGDEKAVFLVNRFAPE
                     QMATSMPLRAILVPRISGLPDTRVVPGSAMAALAALAPSTIFQLPGEPGAELSAMAKL
                     VRDVPVFVLQLGTDFAQIPRRIDELMRSLSSGVTEDV"
     gene            2090..2761
                     /locus_tag="VGN19_05670"
     CDS             2090..2761
                     /locus_tag="VGN19_05670"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEV7195407.1"
                     /translation="MTDPLVTVVVPAHNAAAYLDEALDAIAAQDYSQVEVIVVDDGST
                     DGTGDLAGARDSVTVISQVNAGPSAARNAGIAQASGEYITFCDADDVFRPSKLRVQSD
                     FLAEHDDMGCVLVHHETFFANGTPRPQWLTDDEGVQPQSAMVRRSVIDAVGGFDPDYQ
                     LTEGMEWLSRMRDAGIGIAVLDDVCVDRRIHGANLSYQRAGLQHNMLRSLRARIERSR
                     GAGVA"
     gene            2758..3495
                     /locus_tag="VGN19_05675"
     CDS             2758..3495
                     /locus_tag="VGN19_05675"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEV7195408.1"
                     /translation="MSNDELNTSELNSSAQTQGPLVTVLMTVYNNGPYIGEALESALN
                     QTYRNVEVVVVDDGSKDESWQVLQQYPQVRSQRQDRAGIGAARNAAVAMARGSFYTFL
                     DADDRFPLDKLELQLGAFAADPALDVVYGHVREFVSPDLRDDEAARIRPPVAYNESHL
                     SGVMLVRRDAFERVGPWTVGLKVGTGVDWYARSQEAKLTTLVMPEVFLERRLHLSNNG
                     IQQADNRIQYASILKAALDRRRAAATR"
     gene            3510..4598
                     /locus_tag="VGN19_05680"
     CDS             3510..4598
                     /locus_tag="VGN19_05680"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEV7195409.1"
                     /translation="MATPVGSSDDRRIGLLLSAAFGDTDRALEAWQELAPVLDITTMA
                     HDTHGVFGQLASVVRTIDPDSAVLPRLEGVHRRLWTMNSARVRRVLDARTALARAGVR
                     AEPSGGLAVALRQPDLGQRPLVDAELAVAVQDAKTAERLLVAQGWRETSRRRDGWLLD
                     LHAVTVRTGPHELTLRWCDTEWPYDGEDPDREPRRVLDGAEVRLPAPADLLAYTLIEG
                     YRLWGYTPTRRLADTLLLLRDPCAISWSRLVELSRERAGSLAVHRGLADAARVSDLVP
                     RTVLADLQRDARGARSGLALAADRRMGSAAVLLRRTSGMSVPRAIGASPAVLRQVWEV
                     PGDVSLVSAGARRLRAKLQTRAGQPLSP"
     gene            4595..>5504
                     /locus_tag="VGN19_05685"
     CDS             4595..>5504
                     /locus_tag="VGN19_05685"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEV7195410.1"
                     /translation="MSISGLRGARPWHWSRALVESLRPPPGDPLEQDSLGSGLGRRSA
                     RGAASTVLGQWARFVLQMLSTVVLARLVDPEQYGLVGMVVAIVGVGDALSNVGLSQAT
                     VQRKDITQPHVTLFFWLQVAVGVVLTALTMLGAGLLAGFYGHPELVTITLVLAPTFLL
                     NALSAQHQAVLSRQMRFGVLALIDVVGLALGVTVAIAMAAEGAGVWSIVELTLSVPVC
                     RVVMSWYASGWSPGRPRAVPGSAQMVKFGLNLTASNVLDYSAQNVDNVLIGRFYGAGA
                     LGLYARAYGLLLLPIRQVTAPLARVAV"
BASE COUNT          802 a         1879 c         1928 g          895 t
ORIGIN      
        1 tcctgacacg ctcggggtca agggcctcga cctggccggc gacgatggac gcgaagggct
       61 cgtcgcgctc gtagccggcc gcgacctggt tcgagctcgc gtgcacgacc gtcgggaccc
      121 ccgccagtcg ggccgactcg aggaccgcca cggccagcgg gatgttgttc tcgtacaccg
      181 tggtccacgg ggcctgccag tgcgcgtcgg cggccagatc caccacggcg tcgcacccct
      241 cgatggcccg agccagacgg cggacgttgc gggcgtcaac tgcccggatc gccgccttcc
      301 ggtcgccgcg ccggtccatc aggaccaggt tgcagctgtc cgccagcgcc ggcacgagcg
      361 cgctccccac cagcccgcca gccccgacga cggccacctt caggtccact gaggtcctcg
      421 ccgccatccc cgttgtctgc acaccagacc ctcccctcgt ggccgctagg tcaaacggcc
      481 caaccgccgt tcatcagttt gacggatgcc agacacccgg tgcgggactt cactggattc
      541 gactatccag gacgcaggga agcgagggga accgtggaac agtcttggcg tgccaacgca
      601 cccgacgtga tcagcgaaac catcgatggg gagacgatca ttctccatct cgggaatggc
      661 ttctacttca gtgccggcgg ggccggggcc caggcgtgga gcctgctcag ccaggccgtc
      721 ccggtgcagg caacagccgc cgtactgtcg cggcactacg acaccgacgg ggtggatgtc
      781 gaggctgccg tcgcggactt cgtggaccag ctgaacatgg agggactgct ggtccccgcg
      841 gacggggccg ctgtcccgga ggtggttgcc cccgaggcgc ggctggcctg gcagccgccg
      901 tcgttgtcca agttcaccga catggaggat ctgctgctgc tcgaccccgt gcacgaggtg
      961 agtccctcgc agggatggcc gtatgccgcg tcctcgaacg gcgggccggc gtgaccattg
     1021 cggccctcac ggcccggggt ggcgcacctg cgatcgcgaa agatgacctg gcggcatcgt
     1081 tcgcacagga ctacgacgac tccgcttccg aggcgtggtt ggccctgggc gggcgcaggg
     1141 ttcggctccg cttcgcctcg tccaggacca ggcacctcct cgagtcgttc gcccatctgg
     1201 tgaccgacga gcaggagtcg gcagacctga cgatctgcgt gtgggactcc ccccgagggg
     1261 cgtcgctgac gttgcccgcc tccgacccac aggcaccgcg gggcacccga atggtctggg
     1321 cggacgacca gttgcgtgcg tgctaccagc cgggtcagga cactctgagc gtgctgagcg
     1381 ccgacggcac tgcggcgtgg ttctggtgtg cggacgcgcg cgagctgccg tactgggagc
     1441 atgccgcgcc actgcggctg atcctcagct ggtggctggc agcccagggg gcgaacctgg
     1501 ttcatggggc tgcggtcggc cgggcggagg gaggcgccct catcgtgggc cgcggtggat
     1561 ccggcaagtc gaccaccgcg ctgctctcgc tgcttggtgg cctcgtctat gccagtgacg
     1621 actacgtggt tgtcgagcgt gactaccggc gtcacgggcc gtacatccac agtgcgttcg
     1681 gctcgggcaa gctcgacaac gcccagtgtc ttcggtttcc gcagctggcg cctgcgatcg
     1741 tcaacccgga tcgagtgggt gacgagaagg cggtgtttct ggtgaaccgg ttcgcgccag
     1801 aacagatggc cacgtcgatg ccgctgcgag ccatcctcgt gccacggatc tccggcctgc
     1861 cggacaccag ggtggttccc ggcagcgcaa tggccgcctt ggccgcgttg gcaccgagca
     1921 cgatcttcca gctgccaggc gagcccggcg ccgagctgtc ggcgatggcc aagctggtcc
     1981 gcgacgttcc cgtgttcgtg ctccagctgg gaacggactt cgcccagatt ccccggcgca
     2041 tcgacgagct gatgcggtcg ctgagctcgg gcgtcaccga ggacgtctga tgaccgaccc
     2101 gctggtcact gtcgttgtac ccgcacacaa cgccgcggca tacctggacg aagcgctcga
     2161 cgccattgcg gcgcaggact attcgcaggt cgaggtgatc gtcgtcgacg acgggtcgac
     2221 cgacgggacg ggcgacctgg ctggcgcccg ggactcggtc acggtcatct cccaggtcaa
     2281 cgccgggccg tccgctgccc gcaacgcggg gatcgcgcaa gcgagcgggg agtacatcac
     2341 cttctgcgac gcggacgacg tcttccgtcc atccaagctc cgggtccaaa gcgacttcct
     2401 cgctgagcac gacgacatgg ggtgcgtcct ggtgcaccac gagaccttct ttgcgaacgg
     2461 cacgccgcga ccgcagtggt tgaccgacga cgagggtgtg cagccccagt cggcgatggt
     2521 tcgccgcagc gtcatcgacg cggtcggcgg cttcgatccg gactaccagc tcaccgaggg
     2581 gatggagtgg ttgagccgga tgcgcgacgc cggcatcggg atcgcggtgt tggacgacgt
     2641 ctgtgtcgac agacgcatcc acggggcaaa cctgtcgtac caacgggccg gcctgcagca
     2701 caacatgctg cggtccttac gggcccgcat cgaacggagc cgaggagcag gggtcgcatg
     2761 agcaacgatg agctgaacac cagtgagctg aacagcagcg cacagacgca gggcccgctc
     2821 gtcacggtgc tcatgaccgt gtacaacaac ggcccctaca tcggcgaagc cctcgagagc
     2881 gccctgaacc agacgtaccg caatgtcgag gtcgtggtgg tcgacgacgg ctcaaaggac
     2941 gagagctggc aggtgctcca gcagtacccg caggtgcgct cccagcggca ggaccgggca
     3001 ggcatcgggg ccgcgcgcaa tgccgcggtc gccatggctc ggggcagctt ctacaccttc
     3061 ctcgacgcgg acgaccgctt tccgctggac aagctcgagc tccagctcgg cgccttcgcc
     3121 gcggacccag ctctcgacgt cgtctacggc catgtccggg agttcgtcag cccggacctc
     3181 agggacgacg aggcggcgcg tatccgaccg ccggtggcct acaacgagtc acacctgtcc
     3241 ggcgtcatgc tggtccgtcg cgacgcgttc gagcgggtgg gcccgtggac ggtgggtctg
     3301 aaggtgggga ccggcgtcga ctggtacgcg cgctcccagg aggcgaagct cacgacgttg
     3361 gtgatgcccg aggtctttct ggagcggcgc ctgcacctgt cgaacaacgg catccagcag
     3421 gcggataacc gcatccagta cgcgagcatc ctcaaggccg ccctggatcg gcgccgtgcc
     3481 gccgccacgc gatgaatggt gaggctgccg tggccacgcc cgtcgggtcg tcggatgacc
     3541 ggcgcatcgg actgctgctc tcggcggcct tcggcgatac tgaccgagcc ctcgaggcct
     3601 ggcaggagct cgccccggtc ctcgacatca ccacgatggc ccacgacacg catggcgtgt
     3661 tcgggcagct cgcctccgtg gtgcgcacca tcgatccgga ctccgccgtg ttgcctcgac
     3721 tcgagggcgt gcaccgccgc ctgtggacca tgaactcagc ccgcgtgcgt cgagtcctcg
     3781 atgcgcgcac tgcgctggcg cgcgcgggcg tgcgggctga gccgtcgggc gggttggcgg
     3841 tcgccctcag gcagcctgac ctcggccagc ggccactggt tgacgccgag ctggccgtgg
     3901 cagtgcagga cgcgaagacg gccgagcgac tcctggtggc ccagggctgg agagagacct
     3961 cgcgccggcg agacgggtgg ctcctcgacc tccatgcggt caccgtgcga acgggtcccc
     4021 acgagctgac cctgcgctgg tgcgacaccg agtggcctta tgacggcgaa gacccagacc
     4081 gggagccgcg acgtgtcctg gacggcgccg aggtgaggtt gccggccccc gccgacctgc
     4141 tggcctacac cctgatcgag gggtaccgcc tgtggggcta cacacccacc aggcgcctcg
     4201 ccgacacatt gctgctgctg cgcgacccct gcgcgatctc gtggagccgc ctggtcgagc
     4261 tgagcaggga acgggcgggt tcccttgccg tgcaccgggg tctggccgat gcagccaggg
     4321 tcagcgacct ggtcccgcgg acggtccttg ccgacctcca gcgtgatgcc cgcggtgcac
     4381 gctcaggcct ggccctcgct gccgaccgcc ggatgggaag tgcggcggtg ctgctgcggc
     4441 ggacctcggg aatgtcggtg ccgcgcgcca tcggtgccag ccccgcggtg ctccgccagg
     4501 tctgggaggt gcccggggac gtgtcgctgg tgtcggccgg agctcgacgc ctgcgggcca
     4561 agctccagac cagagctgga cagccgctct cgccatgagc atctcgggcc tgcggggagc
     4621 ccgcccgtgg cactggtctc gtgcgctggt cgagtcactg cgcccgcccc ccggggaccc
     4681 gctcgagcag gactcgttgg gctccggact cggacgacgc agtgcgcgcg gtgccgcgag
     4741 cacggtgctg ggccagtggg cgcggttcgt cctgcagatg ctctcgacgg tcgtcctggc
     4801 gcgcctggtt gatcccgagc agtacggcct ggtgggcatg gtcgtcgcca tcgtcggggt
     4861 gggtgacgcg ctgtcgaacg tcgggctgtc gcaggcgacc gttcagcgca aggacatcac
     4921 ccagccccat gtgacgttgt tcttctggct gcaggtggcc gtgggcgtgg tcctgactgc
     4981 tctcacgatg ctcggggccg ggctcttggc cgggttctac gggcacccag agctggtgac
     5041 gatcaccctg gtgctggccc ccacgttcct gctgaacgcc ctgtccgccc aacatcaggc
     5101 tgtcctgtcc cgacagatgc gcttcggcgt gctggccctg atcgacgtcg tgggtcttgc
     5161 cctcggggtg accgtggcga ttgccatggc tgccgagggc gctggggtgt ggtcgatcgt
     5221 ggagctcacc ctcagcgttc cggtatgccg cgtggtgatg tcctggtacg cgagcggctg
     5281 gtctcccggc aggcctcggg ccgtgcccgg ctcggcgcag atggtgaagt tcgggctcaa
     5341 cctcaccgcc agcaacgttc tggactactc ggctcagaac gtcgacaacg tgctgatcgg
     5401 ccgcttctac ggagctggtg cgctggggct gtacgcgcgg gcgtatggct tgctactgct
     5461 gccgattcgt caggtgacag ccccgctcgc ccgggtcgcg gtcc
//
LOCUS       DASYFY010000279         6708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_334399, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000279 DASYFY010000000
VERSION     DASYFY010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6708
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334399"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..294
                     /locus_tag="VGN19_05690"
     CDS             139..294
                     /locus_tag="VGN19_05690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195411.1"
                     /translation="MAVRTTAPRAGGLRTQVYWDVTDAPKVSEPLCCEHGTHLLTSLA
                     QTLAAQR"
     gene            303..491
                     /locus_tag="VGN19_05695"
     CDS             303..491
                     /locus_tag="VGN19_05695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195412.1"
                     /translation="MPINRDSALEVINQIDAALTLLRPLRDVRMAFGDSWDEANKVID
                     GLLAAQQTVAKAGIGVDR"
     gene            488..673
                     /locus_tag="VGN19_05700"
     CDS             488..673
                     /locus_tag="VGN19_05700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195413.1"
                     /translation="MIGLLIGLALAALVSLYLGFCVTWLAGGRRCPMVGLPDRATLWL
                     LSADDREVWALVRADER"
     gene            670..852
                     /locus_tag="VGN19_05705"
     CDS             670..852
                     /locus_tag="VGN19_05705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195414.1"
                     /translation="MSPTTFAKIAITLACLAVIAFVLVIVHLIGSSNATDRRCQQAGG
                     QMVRYACIDKRVILHP"
     gene            849..1130
                     /locus_tag="VGN19_05710"
     CDS             849..1130
                     /locus_tag="VGN19_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195415.1"
                     /translation="MSEPTNPCAEVPLTGYRNAVNEALRTEMNRLTTSQRADETVTET
                     KWAVLWEDGLLTRYATRSYAEVMLARTTTWSGVLLTQTITTTKSPWRQP"
     gene            1127..1363
                     /locus_tag="VGN19_05715"
     CDS             1127..1363
                     /locus_tag="VGN19_05715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195416.1"
                     /translation="MSEPVVTWTETSRVVGGLKVGERAERTQVTRSLEIDGLPVSVAA
                     QMLLDAAAGLTEPTVLVFVPWGGQAEVIVEGYRA"
     gene            1405..1593
                     /locus_tag="VGN19_05720"
     CDS             1405..1593
                     /locus_tag="VGN19_05720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195417.1"
                     /translation="MACIRNNERREALMTETPEPEAESQTYVSIEVDAGLDETWDSLG
                     LDTPPENAEALLAESEVE"
     gene            1590..1850
                     /locus_tag="VGN19_05725"
     CDS             1590..1850
                     /locus_tag="VGN19_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195418.1"
                     /translation="MIPALTLSDEGITIRTLDASVHVMGPVEVTDLRKKRYASATSME
                     AGMTLRALLANTEMSLSEDDNLALAWAINVCEGTYEISREGD"
     gene            1850..2023
                     /locus_tag="VGN19_05730"
     CDS             1850..2023
                     /locus_tag="VGN19_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195419.1"
                     /translation="MDETEADRRYDEDVATIRDLMFDFTEGLAAAGLAGDGDIRVEVR
                     CYARSGVPIEMTD"
     gene            2023..2418
                     /locus_tag="VGN19_05735"
     CDS             2023..2418
                     /locus_tag="VGN19_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195420.1"
                     /translation="MSRSVYVGRDSRGYVSVEQSRVIWHVEAVSDSYQFAPLTVAGFI
                     SEITDAVEVIAADGIDPTTITVALDYEREPDYGDDRIVCMVVVRGERPATKAEVDDEQ
                     DRLDKAQRQRKADEAAWLRQRLADVERGR"
     gene            2415..2591
                     /locus_tag="VGN19_05740"
     CDS             2415..2591
                     /locus_tag="VGN19_05740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195421.1"
                     /translation="MSEPADLEQIRAAHQATIDVRADLRAKVAQARANGRSWTEIAMV
                     LRTSRQAARERFGR"
     gene            2984..3163
                     /locus_tag="VGN19_05745"
     CDS             2984..3163
                     /locus_tag="VGN19_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195422.1"
                     /translation="MQSPPKIVQVLMHEVVKDALADIFAARGLEIVRMPAFDEEDIEA
                     WSVIPARTAPAREQP"
     gene            3336..3644
                     /locus_tag="VGN19_05750"
     CDS             3336..3644
                     /locus_tag="VGN19_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195423.1"
                     /translation="MTTEGAYRTVYKAVLMHPMQTVDMPVGSRVVTVETQGGQPCIWY
                     ECDPSAPSERRTFTAIGTGHLIPPGQEYVGTSHDVAGAGLVFHVYEQEPPTIGKSEQS
                     "
     gene            3683..3976
                     /locus_tag="VGN19_05755"
     CDS             3683..3976
                     /locus_tag="VGN19_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195424.1"
                     /translation="MTAGVEGQFGDHGPVAGTFGFAFQQVTDSETNETWLWVMTKDYG
                     NVLCEPGWLTDAKGDLPTCFCGLDPLPGETHGPKGCAGPGDRIGVAVAKRYGR"
     gene            3973..4230
                     /locus_tag="VGN19_05760"
     CDS             3973..4230
                     /locus_tag="VGN19_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195425.1"
                     /translation="MSEDRHHVLVTSTMTGGVAQIVAQCTTEGCGWQEKTSTHREAQR
                     AASQHNPRCEAVTPPNYVGAVVRCQRMALHPGDHEHTVRWP"
     gene            4227..4871
                     /locus_tag="VGN19_05765"
     CDS             4227..4871
                     /locus_tag="VGN19_05765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195426.1"
                     /translation="MTEPETVEIAGVTYPVIRDDRLPKDTFMIAASTQRRDVYPHTAA
                     EYVAGEADWETLPSSEQAKVIDWREGAISVSAAELDAISITPQNPGYNDSPPIPMTEE
                     QPMPYEIINAERTASIACPHGGFDVTLDGKTVQVKHVDVSATVVDGKVLLSTVTLSGP
                     VMRKDGRFGERHGYVAIWPEMTPVPFDEAEDFLPWHTLPSNLQHTICQSVGVTG"
     gene            4868..5032
                     /locus_tag="VGN19_05770"
     CDS             4868..5032
                     /locus_tag="VGN19_05770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195427.1"
                     /translation="MSDKVTYMREYRARRKAEGRPLKGGPRGPELRRTQRVPDPMDYA
                     HPDSDVRQEA"
     gene            5032..5373
                     /locus_tag="VGN19_05775"
     CDS             5032..5373
                     /locus_tag="VGN19_05775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195428.1"
                     /translation="MNPDNIAKARAKDDERIATWDDVATSDAMSRLYDNATWASDSDP
                     EAAQFLNDLLAPADDLAAHLRRAQRDIEDARVLLRIVREHHGGLVEGLTDDDRRTLIR
                     VAFRLTKAAQK"
     gene            5370..6368
                     /locus_tag="VGN19_05780"
     CDS             5370..6368
                     /locus_tag="VGN19_05780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195429.1"
                     /translation="MSDPKGYLKVSEDIRLHAANLHGQIIGLLSTVEVRPSTEFQRQS
                     LTNAATAIVNTIALVEMAEDAHRDRHRLPPLNRLSHQCRYCGIGRVTDLRRRCEKCAE
                     PEKDYVALIHERIAKDHDVPLSVVGLPEDNPQVRLIQSFHERTQRCLGRGEQGEAHMD
                     CAMVEQRHREGNHDDCLPVEDEENGEPACAEFVEMLSETIKVGDTVMFNWEDKRIVPD
                     PDPNGGSLTVEHVHDWQPMHDGRTFVNLSDGSDAVSYEQCTACLIERSMPMKRADGRR
                     PDWDRLSGDEKVRARIEGTEYPTPTLEDRLRFLEARVDHLEQRPNPYDVIRGSDGR"
     gene            6365..6565
                     /locus_tag="VGN19_05785"
     CDS             6365..6565
                     /locus_tag="VGN19_05785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195430.1"
                     /translation="MSVAEPKCNHATPLGSVIVSSHKDIRKAKGRMASVRVCHRDACI
                     EDAARWVSIIGPGPVWVEGVKR"
BASE COUNT         1230 a         2302 c         2248 g          928 t
ORIGIN      
        1 cgagccgcac ccggacggcg acgtcgacac ccaggccgag atccagggcc tgatcgactg
       61 ggacgtgccg gtcgagacct tcggcctggt gaccgcgtga cgacatgctt ccagcccggc
      121 tgccaggctg aggcgacgat ggcggtgcga acgaccgcgc ccagagcagg cggtctgcgt
      181 acccaggtct actgggatgt caccgacgcg cccaaggtca gcgagccgct gtgctgcgag
      241 cacggcacac acctgctgac ctcgctcgcc cagacgctgg cagcgcagcg atgagcgctc
      301 cggtgcctat caaccgcgac agcgcccttg aggtgatcaa ccagatcgac gccgccctga
      361 cgctgctgcg accgctgcgc gacgttcgga tggccttcgg cgactcctgg gacgaggcga
      421 acaaggtcat cgacgggttg ctggcagccc agcagacggt cgccaaggcc gggatcggag
      481 tcgaccgatg atcgggctgc tgatcggcct cgccttggct gcgctggtct cgctctatct
      541 cggcttctgc gtcacctggc tcgctggcgg tcgacgctgc ccgatggtcg gcttgcccga
      601 ccgggcaacg ctctggctgc tcagcgccga cgaccgcgag gtctgggctc tcgtccgagc
      661 ggacgagcga tgagcccgac caccttcgcc aagatcgcca tcacgttggc ctgcctcgcg
      721 gtgatcgcct tcgtgctggt gatcgtccac ctgatcgggt cgagcaacgc caccgaccgc
      781 cgctgccagc aggccggggg tcagatggtc cgctacgcct gcatcgacaa gcgggtgatc
      841 ctgcacccat gagcgagccg accaaccctt gcgccgaggt gccgctaacc ggctaccgca
      901 atgccgtcaa cgaggcgctg cgcaccgaga tgaaccggct gacgaccagc cagcgcgccg
      961 acgagaccgt gaccgagacc aagtgggccg tgctctggga ggacgggctg ctgacgcgct
     1021 acgccacccg ctcctacgcc gaagtcatgc tcgcccgcac gacgacctgg agcggcgtcc
     1081 tgctgaccca gacgatcacc accaccaaga gcccctggag gcagccgtga gcgagccagt
     1141 cgtgacctgg accgagacca gtcgggtcgt cggtggactc aaggtcggag agcgcgctga
     1201 gcgcacccag gtgacccgga gcctggagat cgacggcttg ccggtgtcgg tggctgccca
     1261 gatgcttctc gacgccgcag cgggcctcac agagccgacg gtgctcgtct tcgtgccctg
     1321 gggcggccag gccgaagtga tcgtcgaggg ctaccgagca tgagggtgac ctgcgacctc
     1381 gactgcgtcg gcactgtcca cagcatggcc tgcatccgca acaacgagcg ccgggaggcc
     1441 ctgatgactg agaccccgga acccgaggcc gagagccaga cctacgtcag catcgaggtc
     1501 gacgcaggcc tggacgagac ctgggacagc ctcggcctgg acaccccgcc cgagaacgcc
     1561 gaggcgctgc tggccgagag cgaggtcgaa tgatcccggc actgacgctg agcgacgagg
     1621 gcatcaccat ccgcaccctc gacgccagcg tccacgtgat gggcccggtc gaggtcaccg
     1681 acctgcgcaa gaagcgctat gccagcgcca ccagcatgga agccggtatg accctgcgag
     1741 ccctgctggc taacaccgag atgtcgctgt ccgaagacga caacctggcc ctggcctggg
     1801 ccatcaacgt ctgcgaaggc acctacgaga tcagccggga gggcgactga tggacgagac
     1861 cgaggccgac cggcgctacg acgaggacgt tgccaccatc cgcgacctga tgttcgactt
     1921 caccgagggc ctggcggcag ccggactggc tggcgacggc gacatccggg tcgaggtccg
     1981 ctgctacgcc cgctccggcg tgccgattga gatgaccgac tgatgagccg cagcgtctac
     2041 gtcggtcgcg acagccgtgg ctacgtcagc gtcgagcagt ccagggtgat ctggcacgtc
     2101 gaggccgtca gtgactccta ccagttcgcg ccgctgaccg tggcgggctt catcagcgag
     2161 atcaccgatg cggtggaggt gatcgccgcc gacgggatcg acccgaccac gatcaccgtc
     2221 gccctggact acgagcgcga gcccgactac ggcgacgacc ggatcgtctg catggtcgtc
     2281 gtccgtggcg agcgtcctgc caccaaggcc gaggtcgacg acgagcagga ccgactcgac
     2341 aaggcccagc gtcagcgcaa ggccgacgag gcagcctggc tgcgccagcg gctggcagac
     2401 gtggagcgag gccgatgagc gagccagccg acctggagca gatccgggcc gcccaccagg
     2461 cgaccatcga cgttcgggcc gacctgcggg ccaaggtcgc ccaggcccgg gccaacggtc
     2521 ggtcctggac cgagatcgcc atggtgctgc gcacctcccg gcaggccgcc cgagagcggt
     2581 tcggcagatg agcaactgcg accgctgcga caagcccgcc gaggtggctg tcaggtgcta
     2641 ccggggctgc ctccacaacc agtgcgcggg gtgcgctcgg cagacccagc gggagcgcaa
     2701 cgacgagatc gactacgacc gagagattgg ctacttgtga ccgcagaggg cgcctatccg
     2761 gtgggcgata accggagggt ggcatcgctg ccacctcacg accatccgtg gccgatgggc
     2821 tgtgacgcca tcgaggcgac gttcgtctac ggctcacagc gatgcatgag gcgtgcctcg
     2881 ggcgtcgtgt cgtgctccga ctgcccggac cgcacgcccg gtcacgtcca cccggtctgc
     2941 cccgagcacg gaggtccaga agatgcctag cgaggggggg cgggtgcagt caccaccgaa
     3001 gatcgtccag gtgctcatgc acgaggtggt caaggacgcg ctggccgaca tcttcgccgc
     3061 ccgtgggcta gagatcgttc ggatgcctgc ctttgacgag gaggacatcg aggcgtggag
     3121 cgtcatcccc gccaggacgg cacccgccag ggagcagccg tgagttggcc gcagtacggc
     3181 gtggagtgcc tgccgagcca caccacgttc ttcgggacaa agacggagcc ccccggcctg
     3241 atcggcggtt ggcactgccc ctgctcatgt caccacgtaa ccggaggctc gatggcggaa
     3301 acgatcaagc cacctaccgc gaagggcgag cagtcgtgac aaccgagggc gcttaccgca
     3361 cggtctacaa ggcggtcctc atgcacccga tgcagacagt ggatatgccc gtcggcagcc
     3421 gtgtggtgac cgtagagacg cagggcggcc aaccctgcat ctggtacgag tgcgacccat
     3481 ccgcgccctc tgagcggcgc acgttcaccg caatcggcac cggacacctc atcccgcccg
     3541 gacaggagta cgtcggcacg tcgcatgacg tggcaggcgc gggtctggtg ttccacgtct
     3601 acgagcagga gccgccaact atcggtaaga gcgagcagtc gtgacgaccg agggcgcttc
     3661 tgcgctgcca cgtccagtgt ggatgactgc cggggtggaa ggccagttcg gtgaccacgg
     3721 ccctgtcgcc gggacgttcg gcttcgcgtt tcagcaggtc acagactcag agacgaatga
     3781 gacgtggctc tgggtgatga cgaaggacta cggcaacgtc ctgtgcgaac ccggctggct
     3841 gaccgacgct aagggcgatc tgccgacgtg cttctgcggg ctggacccgc tacccggtga
     3901 gacccacggc cccaagggct gcgccggacc cggcgaccgg atcggcgttg ccgtcgccaa
     3961 gcggtatggc cgatgagcga ggaccgacac cacgtcctgg tgacatccac gatgaccggc
     4021 ggggtggccc agatcgtcgc ccagtgcacg accgagggct gcggctggca ggagaagacc
     4081 tccacccacc gtgaggccca gcgggcagcg agccagcaca acccgcgctg cgaggccgtc
     4141 accccgccca actacgtcgg ggccgtcgtg cgctgccagc ggatggcgct gcaccccggc
     4201 gaccacgagc acaccgtgcg gtggccatga ccgagccaga gaccgtcgag atcgccgggg
     4261 tgacctaccc ggtcattcgc gacgaccggc tgcccaagga caccttcatg atcgccgcca
     4321 gcacgcaacg ccgcgacgtc tacccgcaca ccgcagccga gtacgtcgcg ggcgaggccg
     4381 actgggagac cctgccgtcg tccgagcagg cgaaggtgat cgactggcgc gagggggcga
     4441 tcagcgtcag tgcagccgaa cttgacgcca tctcgattac accccagaat cctgggtaca
     4501 acgacagtcc acccatccct atgaccgagg agcagcccat gccctacgag atcatcaacg
     4561 ccgagcggac ggcttccatc gcctgcccgc acggcggctt cgacgtcacc ttggacggca
     4621 agaccgtcca ggtgaagcac gtcgacgtca gcgccaccgt cgtcgacggc aaggtgctgc
     4681 tgtcgaccgt gacgctgtcc gggccggtca tgcgcaagga cggcaggttc ggcgagcgcc
     4741 acggctacgt cgcgatctgg cccgagatga ctccggtgcc cttcgacgag gccgaggact
     4801 tcctgccctg gcacacgctg ccctccaacc tccagcacac gatctgccag agcgtcggag
     4861 tcaccgggtg agcgacaagg tcacctacat gcgcgagtac cgggcccggc gcaaggccga
     4921 gggccgaccg ctcaagggtg gcccgcgtgg cccggagttg cgccgtaccc agcgagtgcc
     4981 ggacccgatg gactacgccc atcccgactc cgacgtgcgt caggaggcgt gatgaacccc
     5041 gacaacatcg ccaaggcccg cgccaaggac gacgagcgca tcgccacctg ggacgacgtg
     5101 gccacctcgg acgcgatgtc ccggctgtac gacaacgcca cctgggccag cgacagcgac
     5161 ccagaggcgg ctcagttcct caacgacttg ctggcgccag ccgacgacct cgcagcccac
     5221 ctgcgccgcg cacagcgcga catcgaggac gcccgcgtgt tgctgcgcat cgtgcgcgag
     5281 caccacgggg gactcgtcga gggactgacc gacgacgacc ggcgcaccct gattcgggtg
     5341 gccttccggc tgaccaaggc ggcccagaag tgagcgaccc caagggctac ctcaaggtca
     5401 gcgaggacat ccggctgcac gcggccaacc tgcacggcca gatcatcggg ctgctgagca
     5461 ccgtcgaggt ccgaccgagc accgagttcc agcgccagtc tctgaccaat gcggctaccg
     5521 ccatcgtcaa caccatcgcc ttggtcgaga tggccgagga tgcccaccgc gaccggcacc
     5581 ggctgccacc actgaatcgg ctcagccacc aatgccggta ctgcggcatc ggcagggtga
     5641 ccgacctgcg tcgtcgatgc gagaagtgcg ccgagcccga gaaggactac gtggcgctga
     5701 tccacgagcg catcgccaaa gaccacgacg tgccgctttc agtcgtcggt ctgcccgagg
     5761 acaatccgca ggtccggctc atccagtcct tccacgagcg cacccagcgg tgcctggggc
     5821 gaggagagca gggcgaggcc cacatggact gcgcgatggt cgagcagcgc caccgcgagg
     5881 gcaaccacga cgactgcctg ccggtcgagg acgaggagaa cggcgagcca gcctgcgccg
     5941 agttcgtgga gatgctcagc gagaccatca aggtcggcga cacggtgatg ttcaactggg
     6001 aggataagcg catcgtgccc gacccagacc ccaacggtgg ctcgctgacc gtcgagcacg
     6061 tccacgactg gcagccgatg cacgatggcc ggacattcgt aaatctctcc gacggctccg
     6121 acgcggtgtc ctacgagcag tgcacggcct gcttgatcga gcgcagtatg ccgatgaagc
     6181 gagccgatgg tcgccgtcct gactgggacc gcctgtctgg cgacgagaag gtccgcgccc
     6241 gcatcgaggg caccgagtac ccgacaccga ctctggagga tcgccttcgc ttcctggagg
     6301 cccgcgtgga ccacctggag cagcgcccta acccgtacga cgtcatccga gggagcgacg
     6361 gacggtgagc gttgccgagc cgaagtgcaa ccacgccacc ccgctggggt cggtgatcgt
     6421 gtccagccac aaggacatcc gcaaggccaa gggccggatg gcctcagtgc gcgtctgcca
     6481 ccgggacgcc tgcatcgagg acgctgcccg ctgggtgtcg atcatcggcc ctggcccggt
     6541 ctgggtggag ggtgtgaagc gatgaagatc aaggtcgagt ggaagcgcgc catcgacatc
     6601 gccagcgctg gtcaggactg ggcgccgggc cgatgagcga taagccgctg accaccgagg
     6661 agttctggga tctcgctcgg actgacccga tcctgggacc actgatca
//
LOCUS       DASYFY010000280         3703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1544548, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000280 DASYFY010000000
VERSION     DASYFY010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3703
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1544548"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1263
                     /gene="hemL"
                     /locus_tag="VGN19_05790"
     CDS             <1..1263
                     /gene="hemL"
                     /locus_tag="VGN19_05790"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEV7195431.1"
                     /translation="GVNSPVRAFQAVGGTPRFMTSGDGPYLRDADGREYVDLVCSWGP
                     MILGHGHPAVREAVSEAASRGFSFGTPSENEVALAEEIVRRVAPVEQVRLVSSGTEAT
                     MSAIRLARGFTGRSLVVKFAGCYHGHVDSLLAQAGSGVATFALPDSAGVPKEMAAETI
                     VLPYNDLEAVEAAFAERGEDIAALITEASPGNMGVVPPGPGFTEGLRRITAAHGALLI
                     SDEVMTGFRCSPSGWFGLEGPYAAGPPDLFTFGKVMGGGFPAAAFGGRADVMALLAPL
                     GPVYQAGTLSGNPVATAAGLSTLLHCTPELYGRLGEVADTITGALGEQLSVAGVPHVI
                     QRAGSMFSVFFRDGAVRDYDAARAQYVPAYAAFFHSMLSQGVYLPPSAFESWFVSGAH
                     DDRALERVLAAIPAAASAAAAAFATIGS"
     gene            1293..1907
                     /locus_tag="VGN19_05795"
     CDS             1293..1907
                     /locus_tag="VGN19_05795"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019136242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEV7195432.1"
                     /translation="MRHGEVYNPEGVLYGRLPGFQLSDLGQQMARLVATHLGDHDVTH
                     VVASSLQRAQETAAPVAAQHGIPITTDDRVIEASNRFEGQHVASMSPRDFIHPRNWPL
                     LTNPLRPSWGEAYVEVAARMVAAIEDARTAARGHEAVVVSHQLPIWTARNALMGKRLW
                     HDPRKRECRLASLTTLTYLEDDLTSVTYAEPAASLLSSTSGGTG"
     gene            1904..2506
                     /locus_tag="VGN19_05800"
     CDS             1904..2506
                     /locus_tag="VGN19_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEV7195433.1"
                     /translation="MKRSRLSRALVLVATPVVALALTACSQNPNSIAAQANDGSRKGY
                     ISGDGAVEAIPAANRAAPIALKGQTLTDQPWSVKGATGKVVVLNVWASWCGPCQAEAP
                     ELEKTWTAFSTSGKPVVFMGINTRDNPASGIATAAKHGLTYPSLNDESGLLILDLQGK
                     VSAPPTTLVLDKTGRIAARVNGQVTASTLTGLVDDVLAQG"
     gene            2524..3276
                     /locus_tag="VGN19_05805"
     CDS             2524..3276
                     /locus_tag="VGN19_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEV7195434.1"
                     /translation="MTADVTGTVTSGALPIALAVALLAGMVSFASPCVLPLVPGFLGY
                     VTGLSDESLEQRRRHRMVLGALLFVLGFSVVFILTTAFLAGIGATLVRHHEVLMRLGG
                     VLVILMAVVFLGAGTQRELKLHRRPASGLAGAPLLGAVFGLGWAPCTGPTLGAVTILA
                     TASGNQSAVTRGIILAIAYSLGLGVPFLVIAAAYERFAGVSAFLRKRQRGIQIFGGGL
                     MLVIGLMLVTGVWESWTHWLQTALVNGFVTVV"
     gene            3289..>3703
                     /locus_tag="VGN19_05810"
     CDS             3289..>3703
                     /locus_tag="VGN19_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HEV7195435.1"
                     /translation="MTRPSPDAVTQPPLSALGWLRWMWRQLTSMRTALFLLLLLAIGA
                     LPGSIWPQRSIDPARTADYIAQHQTLGPWLDRFGFFAVYASPWFAAVYLLLFISLVGC
                     VLPRSRVHWRAVRSTPPRAPQRLERLGGHAEAELAG"
BASE COUNT          493 a         1324 c         1269 g          617 t
ORIGIN      
        1 ggggtgaact cgccggtccg agcgttccag gcggtcggtg gcactcccag gttcatgacc
       61 tccggtgacg ggccgtacct gcgcgacgcc gacggccggg agtacgtgga cctggtctgc
      121 tcgtggggtc ccatgatcct gggacacggc caccccgccg tacgcgaggc cgtgtccgag
      181 gccgcgagcc ggggcttctc gttcgggacg cccagcgaga acgaggtggc gctcgccgag
      241 gagatcgtcc gccgggtcgc accggtcgag caggtgcgct tggtgtccag cggcaccgag
      301 gcaacgatga gtgctatccg cctggcgcgg ggcttcaccg gccgctccct ggtcgtgaag
      361 ttcgccggct gttaccacgg tcacgtcgac tcgctgctgg cccaggcggg ctcaggagtg
      421 gcgaccttcg cgctgcccga ctcggcaggg gtccccaagg agatggccgc cgagaccatc
      481 gtgctgcctt acaacgacct cgaggctgtg gaggcggcct tcgccgaacg gggcgaggac
      541 attgccgctc tgatcaccga ggcgtcgccc ggcaacatgg gcgtggtgcc accaggccct
      601 ggcttcaccg agggcctgcg gcgcatcacc gcagcccacg gagccctact catctccgac
      661 gaggtcatga cgggctttcg gtgctcacct agtgggtggt tcggcctgga gggcccgtat
      721 gccgcgggcc cacccgacct gttcacgttc ggcaaggtca tgggtggcgg gttccccgcc
      781 gcagccttcg gtggccgtgc ggacgtgatg gccctgctcg ccccgctcgg cccggtctac
      841 caggccggaa ccctctcggg gaacccggtc gcgactgccg cgggactgtc caccctgctg
      901 cactgcacac ccgagctcta cggccgtctg ggcgaggtgg ccgacaccat caccggcgcg
      961 ctgggcgagc agctgtccgt cgccggggtg ccgcacgtca tccagcgcgc cggaagcatg
     1021 ttcagcgtgt tcttccgcga tggtgccgtg cgcgactacg acgccgctcg cgcccagtac
     1081 gtgcccgcct atgccgcgtt cttccactcg atgttgagcc agggggtcta tctgcccccg
     1141 agtgccttcg agtcgtggtt cgtcagcggc gcccacgatg accgcgcgct cgagcgcgtc
     1201 ctcgcggcga tcccggcggc ggcgtcagcg gccgcagcag cgtttgcgac aatcggttcg
     1261 tgaacccgcc catccgcacc gtcgtgcacc tcatgcgtca cggtgaggtg tacaaccccg
     1321 agggcgtcct gtacggccgg cttcccggat tccagctgtc cgacctcggt cagcagatgg
     1381 cccgcctggt agccacccac ctcggcgacc acgacgtgac gcacgtcgtg gcgtcctcgt
     1441 tgcagcgggc gcaggagacc gcggcccccg tggccgcgca acacggcata ccgatcacca
     1501 ccgacgatcg ggtgatcgaa gcgtcgaacc ggttcgaggg gcagcacgtg gcgtcgatgt
     1561 cgccgcgcga cttcatccac ccgcgcaact ggccgttgct gaccaacccc ctgcgcccat
     1621 cgtggggcga ggcgtacgtc gaggtcgcgg cccggatggt cgccgccatc gaggacgccc
     1681 gcacggcggc acgtggtcat gaggccgtcg tcgtctcgca ccagctgccg atctggacgg
     1741 cccgcaacgc cctgatgggc aagcggttgt ggcacgaccc gcgcaagcgt gagtgccggc
     1801 tcgcttcgtt gacgaccctg acctacctcg aggacgacct gacttcggtg acgtatgccg
     1861 agccggccgc ctcgctgctc tccagcacct ccggtggcac cggatgaagc gctcccgact
     1921 gtcgcgggca ctggtcctgg tcgccacccc cgtcgtcgcc ctggcgctga cggcgtgctc
     1981 gcagaacccc aacagcatcg ccgcgcaggc caacgacggc agccgcaagg ggtacatctc
     2041 cggcgacggc gccgtcgagg cgatccctgc ggccaaccgc gccgcgccga tcgcgctgaa
     2101 agggcagacc ctgaccgacc agccgtggtc cgtcaagggc gccaccggca aggtggtcgt
     2161 cctcaacgtg tgggcctcgt ggtgcggacc ctgccaggcc gaggcgcccg agctggagaa
     2221 gacatggacc gcgttctcga ccagcggcaa gccggtcgtg ttcatgggca tcaacacccg
     2281 agacaacccg gcctccggaa tcgcgaccgc cgccaagcac gggctgacct acccctcgct
     2341 gaacgacgag tcggggctgt tgatcctcga ccttcagggc aaggtctccg ccccaccgac
     2401 gaccctggtc ctggacaaga ccggccgcat cgccgctcgc gtcaacggcc aggtcacggc
     2461 ctcgacgctc accgggctgg tcgacgacgt cctggctcag ggctaggact cggtgtgccg
     2521 ctgatgactg ctgacgtgac gggcacggtg acctccggcg cgctgccgat cgccctggcg
     2581 gtggccctcc tcgccggcat ggtctcgttc gcctctccgt gcgtgctgcc gctggtgcca
     2641 ggcttcctgg gctatgtcac cggactgtcc gacgagtcgc tggagcagcg ccgtcgacat
     2701 cggatggtgc tcggagcgct cctgttcgtc cttggcttca gcgtcgtctt catcctcacc
     2761 acggctttcc tggctggcat cggggccacg ctggtgcgcc accacgaggt gctgatgcgg
     2821 ctcggcggcg tgctggtgat cctcatggcc gtcgtgttcc tgggcgccgg gacccaacgc
     2881 gagctgaagc ttcaccgccg gcccgcgtcc ggcctggccg gggctccgct gctcggggcc
     2941 gtcttcggcc tgggttgggc gccttgcacc gggccgaccc tgggggcggt gacgattctc
     3001 gcgactgcca gtggcaacca gtccgccgtg acccgaggca tcatcctggc catcgcctac
     3061 tcgctcgggc tgggagtgcc gttcctggtc atcgccgcgg cctacgagag gttcgccggg
     3121 gtctccgcct tcctgcgcaa gcgccagcgc ggcatacaga tcttcggcgg tgggctgatg
     3181 ctggtcatcg gactgatgct cgtcaccgga gtctgggaga gctggacgca ctggctgcag
     3241 actgctctgg tcaacggatt cgtgacggtg gtctgagtgg ctgacacgat gacccggccc
     3301 agtccggacg cggtgaccca accccctctc agtgccctgg ggtggctgcg ctggatgtgg
     3361 cgccagctga ccagcatgcg cacggcgctc ttcctgttgc tgctgctggc gatcggcgcg
     3421 ctgcccggct cgatctggcc ccaacgaagc atcgacccgg cgcgcacggc ggactacatc
     3481 gcccagcacc agaccctcgg gccgtggctc gaccgcttcg ggttcttcgc ggtctacgcg
     3541 tccccgtggt tcgcggcggt gtacctgctg ctgttcatct cgttggtggg ctgcgtgctg
     3601 ccgcgaagcc gggtgcactg gcgcgcggtg cgttcgacgc cgccacgcgc tccgcagcgg
     3661 ctggagcggc tcggcgggca tgccgaggcg gagctggccg ggt
//
LOCUS       DASYFY010000281         1634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1858700, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000281 DASYFY010000000
VERSION     DASYFY010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1858700"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..892
                     /locus_tag="VGN19_05815"
     CDS             59..892
                     /locus_tag="VGN19_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEV7195436.1"
                     /translation="MLARLGEVLAAARAAGRGVGAFNVVHLEHAEALVGAAEDAGLPL
                     VLQVSENTVRWHGSLAPIGLASRALAEQAAVPVVLHLDHATSPALVEEAVALGFTSVM
                     FDGSRLGDHENRALTRSVVERCHASGVDVEAELGEIGGKDGVHAPGVRTRPDEATRFA
                     ADTGVDALAVAVGSSHAMTARTTTLDLELIAELAAMVPVPLVLHGSSGVPDDGIAAAV
                     RAGVVKVNIATHLQGVFTGVVRERLASDPTLVDTRRYVGPAREAVRAEAARLLHVVAL
                     T"
     gene            complement(942..>1634)
                     /locus_tag="VGN19_05820"
     CDS             complement(942..>1634)
                     /locus_tag="VGN19_05820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="daunorubicin C-13 ketoreductase"
                     /protein_id="HEV7195437.1"
                     /translation="HARSHERAATLSDLAGHGTSIVVGDLASQGETRDVAEQVNRLGR
                     MDAIIQNAGVYGDIPRRPTPEGHPRLLAVNTLAPYLLTGLIQTPERLIYLTSDMHVSG
                     DDSLNDLDWNTRRWNATQAYRDSKLFVTALALAVARRWPDIISHAVDPGWVPTRMGGP
                     SASDDLEQGHLTQTWLAVTDSPDALRSGQVWHHRRPAPIAAAAGDSSFQDRILQQLAE
                     KTGIVLESQHSA"
BASE COUNT          202 a          508 c          648 g          276 t
ORIGIN      
        1 ctggaccaga gtgacatcga ccggctccgt gccggcatac gggtttggag ggactgacgt
       61 gctggcacga ctgggcgagg tactggccgc tgcccgtgcc gcagggcgtg gggtgggcgc
      121 cttcaacgtg gtccacctcg aacacgccga ggccctcgtc ggggcggccg aggacgccgg
      181 tctgcctctg gtgctccagg tcagcgagaa caccgtgcgc tggcacggca gcctggcacc
      241 gatcggcctc gcctcgcgag cgctggcgga gcaggccgcc gtgccggtgg tcctgcacct
      301 cgaccatgcg acgtcgccgg cgttggtcga ggaggcggtg gcgctggggt tcacctcggt
      361 gatgttcgac ggctcgcggc tgggcgacca cgagaaccgc gccctcaccc ggtcggtcgt
      421 cgagcggtgt catgcctcgg gtgtcgacgt cgaggcggag ctgggcgaga tcgggggcaa
      481 ggacggtgtg catgcgccgg gggtgcgcac gcggccggac gaggccaccc gcttcgcggc
      541 cgacaccggc gtcgatgccc tcgccgtcgc ggtgggcagc tcgcacgcga tgacagcacg
      601 cacgacgacc ctcgacctcg agctgatcgc agagctcgcc gcgatggtgc ctgtgcccct
      661 ggtacttcac ggctcgtcgg gagtgcccga cgacgggatc gccgccgccg tgcgagccgg
      721 cgtcgtgaag gtcaacatcg ccacgcacct gcagggcgtg ttcaccggtg tggtgcgtga
      781 acggctggcg agcgacccga ccctggtcga cacccgcagg tacgtcggac cggcccgcga
      841 ggcggtgcgg gccgaggctg cccggctcct gcacgtcgtc gccctgacct agtgccccgc
      901 gtgttgacgg ttgcccaagg gacagacctc atcgtttggc gtcaggcgct gtgctggctt
      961 tcgaggacga tcccggtctt ctcggccagc tgctggagga ttcgatcctg gaagctgcta
     1021 tcgcctgctg cagccgcgat tggggctggt cggcggtggt gccagacctg gccgctgcgg
     1081 agggcgtcgg ggctgtcggt gacggcgagc caggtttggg tgaggtggcc ttgttcgagg
     1141 tcgtcgctgg cggaggggcc gcccatgcgg gtggggaccc agccgggatc gacggcgtgg
     1201 ctgatgatgt ctggccagcg gcgggcgacg gcgagggcca gcgcggtgac gaagagcttg
     1261 ctgtcgcggt aggcctgggt ggcgttccag cggcgggtgt tccagtcgag gtcgttgagg
     1321 ctgtcgtcgc cgctgacgtg catgtcgctg gtcaggtaga tcagccgttc cggtgtctgg
     1381 atgagtccgg tcagcaggta gggggcgagg gtgttgaccg ctagcagccg gggatggcct
     1441 tccggggtgg gtcggcgggg gatgtcgccg tagacaccgg cgttttggat gatggcgtcc
     1501 atgcggccga gccggttgac ctgctcggcc acgtcgcggg tttcaccctg actggcgagg
     1561 tcgccgacga cgatggacgt tccgtggccg gcgaggtcgc tcagcgtggc cgcccgctcg
     1621 tggctacggg cgtg
//
LOCUS       DASYFY010000282         4297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_703594, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000282 DASYFY010000000
VERSION     DASYFY010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4297
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_703594"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1459)
                     /locus_tag="VGN19_05825"
     CDS             complement(<1..1459)
                     /locus_tag="VGN19_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEV7195438.1"
                     /translation="MSKIVEKLLRAGEGRILKKLQGIAAQVNAIEEDFEKLTDAELRA
                     ETDVFRKRLADGETLDDILPEAFAAVREASKRTLGKRHFDVQIQGGAALHLGNVAEMK
                     TGEGKTLVATLPSYLNALEGKGVHVVTVNDYLAEYQSELMGRVHRALGLETGVILASM
                     TPEERRVEYAKDITYGTNNEFGFDYLRDNMAWSMEELVQRGHNFAIVDEVDSILIDEA
                     RTPLIISGPADAATKWYTEFSRIAKMLTRGELESGEGDYEVDEKKKTVGVLEAGIAKV
                     EDYLGIDNLYESVNTPLIGYLNNAIKAKELFKRDKDYVNLNGEILIVDEHTGRMLAGR
                     RYNEGMHQAIEAKEGVEIQNENQTLATITLQNYFRMYDKLSGMTGTAQTEAAELYSIY
                     KLGVVPIPTNRPMVRKDQADLVYRTEEAKFTAVVDDLVERHAQGQPVLVGTVSVEKSE
                     YLSDQLRRRGVPHEVLNAKQHEREAAIVAQAGRKGA"
     gene            complement(1602..1886)
                     /locus_tag="VGN19_05830"
     CDS             complement(1602..1886)
                     /locus_tag="VGN19_05830"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195439.1"
                     /translation="MAETTVADNPARHRYEVSVDGVIAGVAVYRRDGPTVTFVHTEVD
                     VEFEGQGIGGALARGALDDVRAQGGRVVAECPFIKAWIASHPSYQDLVTP"
     gene            complement(1945..3300)
                     /locus_tag="VGN19_05835"
     CDS             complement(1945..3300)
                     /locus_tag="VGN19_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195440.1"
                     /translation="MTFSAAQHRATSSRTPRTPRVHRAWWIVAVVLAAGVAAAGFRSS
                     TGALLEPLESEFGWSRATTSGAVTANLVIYGLTAPFAAALMDRFGIRRVVSAALVLVA
                     AGSGLTVVMTQPWQLWVLWGVAVGVGTGAMALVLGAIVANRWFVESRRGLVTGVFSAA
                     GAAGQLVFLPGIAALATGPGWRYAALVVTGAALLLVPLVLLVVRDWPADVGLLPLGAD
                     PSLTEPNLDRSGRGEGAGHVAVRTLRESLRSRTFWILVGTFWVCGWSTNGLIGTHFIP
                     AAHDHGMPETTAAGLLALIGVFDLFGTIASGWLTDKVDPRLLLCGYYGLRGLSLLFVP
                     ALLGPDIQPNLFVFIIFYGLDWVATVPPTIALCRRHFGVERSGVVFGWVFASHMVGAG
                     VAASYAGWVRTTTGDYFTAWLTAGGMCLVAALACLAVSPSPERGSWTADGEKVEVASV
                     A"
     gene            complement(3410..>4297)
                     /locus_tag="VGN19_05840"
     CDS             complement(3410..>4297)
                     /locus_tag="VGN19_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HEV7195441.1"
                     /translation="WPLLDFRMQRALSDSWGGMQRVVRDHPALVDAVRAEVLARGPLT
                     SRQVEAALEHDLPRQRDEWGWNWSLVKTALEHLFWAGRVSSAGRTRQFERRYAAPERV
                     LPPSLALAARDSASVPSEESSFKELILIAARAHGVGTEQCLRDYFRLKPHQARPALEA
                     LVAEGVLVPTTIEGWRRPAYLHPQVRRPRAIHAQALLSPFDSLVWQRERTAALFGMDY
                     RLEIYVPAHLRVHGYYVLPFLFGDRLVARCDLKADRAAGLLRVQAVHWEAGAPTEAKA
                     ALDDELSLLADWLGLSSGE"
BASE COUNT          704 a         1490 c         1442 g          661 t
ORIGIN      
        1 ccgcaccctt gcggcccgcc tgcgccacga tcgcggcctc ccgctcgtgc tgcttggcgt
       61 tgaggacctc gtgcggcacc ccgcgacgac gcagctggtc ggagaggtac tcgctcttct
      121 cgacggacac ggtgcccacc agtacgggct ggccctgggc atggcgctcg acgaggtcgt
      181 cgaccacggc cgtgaacttg gcctcctcgg tgcggtagac taggtcagcc tggtccttgc
      241 gcaccatcgg gcggttggtc gggatcggca cgacgcccag cttgtagatc gagtagagct
      301 cggcggcctc ggtctgggcc gtgccggtca tacccgagag cttgtcgtac atgcggaagt
      361 agttctgcag ggtgatcgtg gcgagggtct ggttctcgtt ctggatctcg acgccctcct
      421 tcgcctctat ggcctggtgc atgccttcgt tgtagcggcg gccagcgagc atgcgccccg
      481 tgtgctcgtc gacgatgaga atctcgccgt tgaggttgac gtagtccttg tcccgcttga
      541 acagctcttt cgccttgatg gcgttgttga ggtagccgat gaggggggtg ttgaccgact
      601 cgtagaggtt gtcgatgccg aggtagtcct cgaccttggc gatacccgcc tccagaacgc
      661 cgaccgtctt cttcttctcg tcgacctcgt agtcaccctc gccggactca agctcaccgc
      721 gggtgagcat cttggcgatc cgcgagaact cggtgtacca cttggtggcg gcgtcggcgg
      781 gtccgctgat gatcagtggc gtgcgcgcct cgtcgatcag gatggagtcg acctcgtcga
      841 cgatggcgaa gttgtggccg cgctgtacga gctcttccat cgaccacgcc atgttgtcgc
      901 gcaggtagtc gaagccgaac tcgttgttcg tgccataggt gatgtccttg gcgtactcga
      961 cgcggcgctc ctcgggggtc atcgaggcca gaatcacgcc ggtctcgaga ccgagcgcgc
     1021 gatggacgcg tcccatcagc tcggactggt actccgcgag gtagtcgttg acggtgacga
     1081 cgtggacgcc cttgccctcg agggcgttga gatacgacgg cagcgtggcc acgagggtct
     1141 tgccctcacc ggtcttcatc tcggcgacgt tgcccaggtg cagggcggcc ccgccctgga
     1201 tctggacgtc gaagtgccgc ttgcccaagg tgcgcttgct cgcctcgcga acggcggcga
     1261 aggcctcggg caggatgtcg tccagggtct caccgtctgc caggcgcttc ctgaacacgt
     1321 cggtctcggc acgcagctcg gcgtcggtga gcttctcgaa gtcctcctcg atggcgttca
     1381 cctgggcggc gatgccttgg agcttcttga ggatgcgtcc ctcaccggca cgcagcagct
     1441 tctcgacgat cttggacacg cagcatctcc tgaaagttcg cggccgagga catccctgtg
     1501 actacggccc gccctaggtt agtcgagtcc gcctgagccc gggcacgcgc cggtcgacgg
     1561 accctccaat ggcaacgccc ctcggtgggc cggggttccg ctcagggggt cacgaggtcc
     1621 tggtagctcg ggtggctggc gatccaggcc ttgatgaagg ggcactcggc cacgacgcgt
     1681 ccgccctgcg cgcggacgtc gtcgagggcg ccccgtgcga gcgcaccgcc gatcccctgt
     1741 ccttcgaact ccacgtcgac ctcggtgtgc acgaaggtca cggtgggtcc gtcccggcga
     1801 tagaccgcga cgccggcgat cacgccgtcg acgctcacct cgtaccggtg gcgcgctggg
     1861 ttgtcggcga cggtggtctc ggccatggcc ctacccaaac acaccgcact ccttgtctcc
     1921 agtccccgcg tcaggcgtca ggggtcacgc gaccgaggcg acctcgacct tttccccgtc
     1981 agcggtccaa gagcctcgct ccggcgacgg cgacaccgcc aagcacgcaa gcgccgcgac
     2041 cagacacata cccccggctg tgagccacgc cgtgaagtag tcgccggtcg tcgtgcgaac
     2101 ccacccggca tacgaggcgg cgacgccggc accaaccatg tgcgaggcga acacccagcc
     2161 gaacaccacc ccggatcgtt cgactccaaa gtgtctgcgg cacaacgcga tggttggggg
     2221 gacggtggcc acccagtcaa gcccgtagaa gatgatgaag acgaagaggt tcggctggat
     2281 gtcgggcccg agcaacgctg gcacgaacaa caacgacagc ccgcgcaggc cgtagtagcc
     2341 gcacagcagc aacctggggt cgaccttgtc ggtgagccag ccggacgcga tggtgccgaa
     2401 caggtcgaag accccgatca acgcgagcag accggccgcg gtggtctccg gcataccgtg
     2461 gtcgtgcgcg gccgggatga agtgcgtgcc gatcaagccg ttcgtggacc atccgcacac
     2521 ccagaaggtg ccgaccagga tccagaacgt ccgcgagcgc agagactcgc gcaacgtccg
     2581 gacggcgacg tgccctgccc cctccccgcg cccagaccgg tcgaggttgg gttcggtcag
     2641 cgaagggtcc gcacccaggg gcaggaggcc gacgtcggcc ggccagtcgc gcaccacgag
     2701 aagcaccaac ggcacgagga gcagggcggc gcccgtgacc accagcgcgg cataccgcca
     2761 tcctgggccg gtggcgaggg ccgcgatgcc ggggaggaac accagctgac ccgcggctcc
     2821 agccgcggag aacactccgg tcaccagccc gcgccgggac tcgacgaacc accggttggc
     2881 gacgatggca cccaggacca gggccatcgc gccggttccc acaccgacgg ccacgcccca
     2941 gagcacccac agctgccacg gttgggtcat caccacggtg aggccggaac cggcggccac
     3001 cagcacgagc gccgcgctga cgacccgccg gattccgaac cggtccatca gtgccgctgc
     3061 gaacggcgcc gtcagaccgt agatcacgag gttcgcggtg accgcccccg acgtcgtcgc
     3121 ccgagaccag ccgaactcac tctccagcgg ttccagcagg gctccggtcg aggaccgaaa
     3181 ccccgcagct gcgactccgg ccgcgagcac gaccgcgacg atccaccatg cgcggtgtac
     3241 gcgaggcgtg cggggggtgc gggaacttgt ggcgcggtgc tgggcggcag aaaacgtcac
     3301 cgtcgcaatc tatctgccag aggcaccggc aggacagcga gttccggaca gcgtccgtcg
     3361 agatcccgcc accagccgaa cgcgggcagg cgcctcagga cacccggcct cactcgccgg
     3421 aggagaggcc cagccagtcg gccagcagtg acagctcgtc gtctagcgcc gccttggcct
     3481 cggtcggtgc tcctgcttcc cagtgcacgg cctgcaccct gagcagaccg gcagcgcggt
     3541 cggccttgag gtcgcagcgc gccaccagcc ggtcgccgaa caggaacggc agcacgtagt
     3601 aaccgtgcac gcgcaggtgc gcgggcacgt agatctcgag ccgatagtcc atcccgaaca
     3661 acgccgccgt ccgttcccgc tgccagacca gcgagtcgaa cgggctgagc agcgcctggg
     3721 cgtggatcgc gcgggggcga cggacctgcg gatgaaggta tgccggccgg cgccagccct
     3781 cgatcgtcgt cggtacgagg acgccctcgg cgacgagggc ctccagcgcc ggcctggcct
     3841 ggtgtggctt gagccggaag tagtcacgca gacactgttc ggtgcccacc ccgtgcgccc
     3901 gagccgcgat gaggatcagc tccttgaagg aggactcctc ggacggcacc gatgcagagt
     3961 cccgggccgc cagcgccagt gagggcggga gcactcgctc cggtgcggca taccggcgtt
     4021 cgaactgacg ggtgcgccct gccgagctca cccgaccggc ccagaacagg tgctcgaggg
     4081 cggtcttgac caatgaccag ttccagcccc actcgtcgcg ctggcgggga aggtcgtgct
     4141 ccagggccgc ctcgacctgg cgagacgtca gcggccctcg cgccaggacc tcggcccgca
     4201 ccgcgtcgac cagtgccggg tggtcgcgca cgacccgctg catgccgccc cacgagtcgc
     4261 tgagcgcacg ctgcatccga aagtcgagca agggcca
//
LOCUS       DASYFY010000283         2277 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_334700, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000283 DASYFY010000000
VERSION     DASYFY010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334700"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..849
                     /gene="fliD"
                     /locus_tag="VGN19_05845"
     CDS             <1..849
                     /gene="fliD"
                     /locus_tag="VGN19_05845"
                     /inference="COORDINATES: protein motif:HMM:NF018852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEV7195442.1"
                     /translation="TLTSDTDPTGAAYTLASQGTDAQISFANPSDPAHPYTSKSATNT
                     FSSVLAGTTFTVSSAGVNATISTATDPNAIANSVKAFVDAANATLTAISAATDSSSGS
                     TAPLKGDYSLISLKNQILDSVSKAVSGVVGSSSSASNGVQLTNDGKLTFTVADFTTAF
                     AANPTLVQQTFSGAVGVGADGVANTADDVSVTDGVGARLQLLANSACDSVSGILVSLA
                     NGQDSRAKDLQAQIDDWTTRLTLRQQTLTSQFTAMETALGTLKSQSSWLTSQINQLPT
                     WSSSSK"
     gene            912..1298
                     /gene="fliS"
                     /locus_tag="VGN19_05850"
     CDS             912..1298
                     /gene="fliS"
                     /locus_tag="VGN19_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEV7195443.1"
                     /translation="MSTASLRARYMGDSVATASPHQLLVMLYDRLALDLERAEQALET
                     KDRERSHEQLLHAQEIVLELRASLNVDVWDGGPRLAALYAWLVGELIQANLKCDVRRV
                     RDCRRVVEPLRDAWREAALSLVASSA"
     gene            1310..1654
                     /locus_tag="VGN19_05855"
     CDS             1310..1654
                     /locus_tag="VGN19_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195444.1"
                     /translation="MPARDDGEGPAHDWPGVLAGFEGELLEAERVLAGNRADEIAAWG
                     RRATDWVPPSALGPLPLELRERAARLLQHQLAVAERLVERITQSQRQRDLAARMSLGP
                     SRPVASFVDRGI"
     gene            1913..2263
                     /gene="flgB"
                     /locus_tag="VGN19_05860"
     CDS             1913..2263
                     /gene="flgB"
                     /locus_tag="VGN19_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013769837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009429 - bacterial-type flagellum basal
                     body, proximal rod [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEV7195445.1"
                     /translation="MGVGDVTTAALHAALSGLAERSRVTADNIANINTPGFLAGRTDF
                     ESALKNSLSSGESPAISGGTVARSLEPTNSNGNNVNLDQETVIATETGLRYQLALNAL
                     DGKYSVLRTSLQTT"
BASE COUNT          382 a          849 c          727 g          319 t
ORIGIN      
        1 acgctgacct ccgacaccga ccccaccggc gccgcctaca cgctggcatc ccagggcacc
       61 gacgcgcaga tcagcttcgc caacccgagc gacccggcgc acccatacac gagtaagtcg
      121 gcgaccaaca cgttcagctc cgtgctcgcc ggcacgacgt tcaccgtgag cagcgcgggg
      181 gtcaacgcga cgatctccac cgccacggac ccgaacgcga tcgcgaactc ggtaaaggcg
      241 ttcgtggatg cggccaacgc gaccctgacc gcgatcagcg ccgccacgga cagctccagc
      301 ggcagcaccg cgcccctgaa gggcgactac tcgctcatca gcctgaagaa ccagatcctc
      361 gactccgtgt ccaaggccgt gtccggcgtc gtcgggtcca gctcatcggc ctcgaacggg
      421 gtgcagctga ccaacgacgg caagctgacg ttcacggtcg ccgacttcac caccgcgttc
      481 gcggcgaatc ccaccttggt gcagcagacc ttcagcggcg cggtcggcgt cggtgccgac
      541 ggcgtcgcca acaccgcgga tgacgtgtcc gtcaccgacg gggtcggcgc acggctgcag
      601 ctgctggcca actcggcctg cgactcggtc agcggcatcc tggtcagcct cgccaacggt
      661 caggacagcc gggcaaagga cctgcaggcc cagatcgacg actggaccac ccgcctgacg
      721 ctgcgtcagc agacgctgac cagccagttc acggcgatgg agaccgcact gggcacgctg
      781 aagagccagt cctcatggct gacctcgcag atcaaccagc tgccgacctg gtcctcgtcg
      841 tccaagtgac cgtctgaccc tgagcccgcc ggcctggttc caccgcttcg ttccccagga
      901 gacctgcccg aatgagcacc gcatcgctcc gcgcccgtta catgggcgac tcggtcgcca
      961 ccgcgtcgcc gcaccagctg ctggtcatgc tgtacgaccg gctggccctg gacctggagc
     1021 gtgccgagca ggcgctggag accaaggacc gcgagcgctc gcacgagcaa ctgctgcacg
     1081 cccaagagat cgtcctggag ctacgcgcga gcctgaacgt cgacgtgtgg gacggcggac
     1141 cacggctggc ggcgctttac gcctggctcg tcggcgagct catccaggcc aacctcaagt
     1201 gcgatgtccg ccgtgtccgg gactgccgga gggtcgtaga gccgctgcgc gacgcgtggc
     1261 gggaggccgc cctgtccctg gtcgcgagct cggcgtgacg tcccatggca tgcccgcccg
     1321 ggacgacggg gaggggccgg cgcacgactg gcccggcgtc ttggccggtt tcgagggcga
     1381 gctgctcgaa gcagagcggg tgctcgccgg caaccgcgcc gacgagatcg ctgcctgggg
     1441 tcgccgcgcc acggactggg tcccgccgtc ggccctgggc cccctgcctc tggagctgcg
     1501 cgaacgcgcc gcccggctac tgcagcacca actcgccgtc gctgaacgac tggtcgagcg
     1561 catcacccag tctcagcgcc agcgcgacct cgctgcgcgg atgtcactcg gcccgagccg
     1621 gccggtggcc tcattcgtcg accgcgggat ctgaccaccc gccgccttcg tcacgcgagt
     1681 cacgtgcgtt gacagcggtg cacaaccgca cttcctgacc ctcccgtccc acgggcgggg
     1741 gacgcacggt caaccaggcg cctcagggtg ccgatgagac aagagcacgg acagcagagc
     1801 ttcgccacgg atcggcggac cacagcactc gtctcacgag tgctctcccg cgtatccgga
     1861 ggtcgatcgt gtccttctgc attcctgctc ggcggtgccc cgcgtgagcg tcatgggcgt
     1921 cggcgacgtc acgacggcgg ccctgcacgc agcgctcagc ggactggccg agcggtcgcg
     1981 cgtcaccgcc gacaacatcg ccaacatcaa cacgcccggc ttcctcgccg gccgcaccga
     2041 cttcgagtcg gcgctgaaga actcgctgag ctcgggtgag tcgcccgcga tctccggcgg
     2101 aaccgtcgcg cgctccctgg agccgacgaa cagcaacggg aacaacgtca acctggacca
     2161 ggagacggtc atcgccactg agaccggtct ccgctaccag ctggccctca acgcgctcga
     2221 cggcaagtac agcgtcctgc gcacgtccct gcagacgacc tgatgggcgt cttcgac
//
LOCUS       DASYFY010000284         1581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1858944, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000284 DASYFY010000000
VERSION     DASYFY010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1858944"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..176
                     /locus_tag="VGN19_05865"
     CDS             <1..176
                     /locus_tag="VGN19_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
                     synthase"
                     /protein_id="HEV7195446.1"
                     /translation="GVASGNGKGQIFVRGEVIKTVPESQIVETLIEEAMRIAEEMGEG
                     DEQSAGTPSVVVG"
     gene            244..1089
                     /locus_tag="VGN19_05870"
     CDS             244..1089
                     /locus_tag="VGN19_05870"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195447.1"
                     /translation="MLRTRNPVHALSPSDRDDALRVCAQDLPANVFVAARLLEGVLTT
                     QPGTVLGLRVDGELKSLCWSSANLVPVEADVDSLGFFADRVRRWRRHCASILGPADQV
                     SELWRHLAPSWGPARAVRANQPLMSSLVRPSELGVELDERVRPATLSEVDLVMPAAAQ
                     MFEGEIGYPPYTGSGAAYRNALQALIDRGHTFVVIEDGAVLFKADVGSVALGCAQLQG
                     VWLDPRLRGQGLAVPMMAAVVEQVMATRAKWVTLYVNDFNHSARATYRHVGFDDVGAF
                     STVLL"
     gene            1086..1337
                     /locus_tag="VGN19_05875"
     CDS             1086..1337
                     /locus_tag="VGN19_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195448.1"
                     /translation="MSDEQPDSPETSHVPETTAAGNTLVYFWGSLLVFAAFLVILPGQ
                     ETDGRAWLWIGLVLLLASVVGFTFALRARLRFLRKDGRS"
     gene            1334..>1581
                     /locus_tag="VGN19_05880"
     CDS             1334..>1581
                     /locus_tag="VGN19_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030416 - methylamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MauE/DoxX family redox-associated membrane
                     protein"
                     /protein_id="HEV7195449.1"
                     /translation="MKTPAPLTKDLIGLATLFLTSGTTHLVRPEVFDPLVPSSLPRRR
                     ELIYASGVAELICAAGLLHPRTRRHAGWASAALLLGVFP"
BASE COUNT          222 a          544 c          538 g          277 t
ORIGIN      
        1 tgggcgtcgc ctccggcaac ggcaaggggc agatcttcgt caggggcgag gtcatcaaga
       61 cggtccccga gagtcagatc gtcgagaccc tcatcgagga ggccatgcgg attgccgagg
      121 agatgggcga gggggacgag cagtcggccg gcacgcccag cgtcgtcgtc ggctgagcag
      181 agtccgtcct cacgaccgcg cgagtcggcc gcgcagtaag gccgcaccgc ttaggctgtc
      241 gacgtgctgc gcactcgcaa cccggtccac gcgctgtcgc cttcggaccg cgacgacgcg
      301 ttgcgggtgt gcgcccagga cctccccgcc aatgtcttcg tcgcggccag gctgctggag
      361 ggggtactga ccacccagcc aggcaccgtg ctcgggctgc gggtcgatgg cgagctgaag
      421 tcgctgtgct ggtcgagcgc caacctcgtc ccagtcgagg cagacgtcga ctcgctcggg
      481 ttcttcgctg accgggtccg ccggtggcgt cgccactgcg cctctatcct cgggcctgcc
      541 gaccaggtgt cagaactgtg gcgccatctg gctccctcgt ggggccccgc ccgggcggtt
      601 cgagccaacc aaccgctgat gagcagcctg gtcaggccgt ccgagctggg agtggagctg
      661 gacgagcgcg tccgcccggc caccctgtcc gaggtcgacc ttgtcatgcc cgccgccgca
      721 cagatgttcg agggagagat cgggtacccg ccctacaccg gctcgggcgc ggcataccgc
      781 aatgcactcc aggccctcat cgaccggggc cataccttcg tggtgatcga ggacggcgcc
      841 gtcctcttca aggcggacgt gggctcggtc gcgctgggct gcgcgcagct ccagggggtg
      901 tggctggatc cgcggctgcg tggccagggc ctcgccgtgc cgatgatggc ggcggttgtc
      961 gagcaggtga tggcaacccg cgcgaagtgg gtcaccctgt acgtcaacga cttcaaccac
     1021 agtgcccgcg cgacctaccg acatgtgggc ttcgatgatg tcggggcgtt ctccacggtg
     1081 ttgctgtgag cgacgagcag cccgacagcc ctgagaccag tcacgtcccc gagacaaccg
     1141 ccgccgggaa cacgttggtc tacttctggg gttcgctcct ggtcttcgca gcgttcctcg
     1201 tcattttgcc cggtcaggag accgacggcc gggcctggct ctggatcggg ctcgtcctgc
     1261 tgctggccag tgtcgtgggt ttcacgttcg cgcttcgggc cagactccgc ttcctacgca
     1321 aggatggccg gtcatgaaga cccccgcccc gctcaccaag gacctcatcg gtctcgccac
     1381 tcttttcctc acgtcgggaa cgacccatct ggtgagaccg gaggtcttcg acccgctcgt
     1441 gccgtcgtcg ctgccccgcc gccgcgagct catctatgcg tcaggggtcg ccgagctgat
     1501 ctgtgcggcc gggctgttgc accccagaac gcggcgccat gccggatggg ccagcgccgc
     1561 cctgctgctg ggcgtgtttc c
//
LOCUS       DASYFY010000285         3177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1754868, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000285 DASYFY010000000
VERSION     DASYFY010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3177
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1754868"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..289
                     /locus_tag="VGN19_05885"
     CDS             <1..289
                     /locus_tag="VGN19_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEV7195450.1"
                     /translation="GEQTDAFVVRKAGKAHGLQQRIEGPSIAGRRVVIVEDTSTTGAS
                     PLEAANAAREAGAEVVAVATIADRATGAAEKFAEAGLEYRFVYGLDELGLA"
     gene            326..1219
                     /locus_tag="VGN19_05890"
     CDS             326..1219
                     /locus_tag="VGN19_05890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195451.1"
                     /translation="MDAPIKVNGLRKVYAGKAAVDGVDLQIETGEVFALLGPNGAGKT
                     TTVEILEGFRRRDGGEVKVLGQDPQSAGLSWRSRIGMVLQGSTGLDLLTAREALASTA
                     KVYPRARDVDEVMDAVGLSEKANDRIGRLSGGQRRRLDVALGIIGGPELLFLDEPTTG
                     FDPQARRDFWGLIGSLADGGTTILLTTHYLDEAEHLAHRVGVIAAGQMLAVDTPANLG
                     GRASSRATVSWEDLAGVRHTTTTDTPTQVVATLATELGGEVPKLTVSRPSLEDTYLTL
                     IAPHVVDARVMDPDPANEVVG"
     gene            1216..2016
                     /locus_tag="VGN19_05895"
     CDS             1216..2016
                     /locus_tag="VGN19_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195452.1"
                     /translation="MNALAIGLDRTVLELKLYFREREAVFFSFAFPILMLGMFSVIFA
                     NTFGKGDTAGVNAARFFLPGMVAAGVMLTSFQSIALSVATERDDGTLKRLRATPMPPV
                     SYFLGKAGLVAVTSLAQFALLIALAGFAFGVALPTDGAHWLTFAWVFLMGVACGTVLG
                     IAYSSLASSARSVGAVVAPTLILQFISGVYFAFRDLPSWLKEVAALFPLKWVAQGMRS
                     VFLPDDWRTQEMAGGWEHGRTALVLAVWAVVGIALCLRTFRWTRRGMS"
     gene            complement(2038..2733)
                     /locus_tag="VGN19_05900"
     CDS             complement(2038..2733)
                     /locus_tag="VGN19_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEV7195453.1"
                     /translation="MHSLSTTWMDPQWLLHHFGNQFFWVAAAIVFVECGLLFPLLPGD
                     SLLFAIGLFVSTGDFSMNLVLAMVLLSIAAFAGNVAGYEIGRAVGTPLYERDGRLLKK
                     KYFDQSHAFFEKHGAKALVIGRFVPVVRTFITLVAGVSRMDRRHFLVWSGVGAVGWVW
                     AVTLLGYFLGKSFPALKDHLELAIFGIVLLSLVPMVVEVLRARRSGPTAEVLADEPAE
                     HTERPEAVRDGRA"
     gene            2807..>3177
                     /locus_tag="VGN19_05905"
     CDS             2807..>3177
                     /locus_tag="VGN19_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017199482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HEV7195454.1"
                     /translation="MISPVGEPVSEQVGVGPWEGPWPSGDHWDPELLREGDRRNVVDA
                     YRYWRHEAIVADLDTRRHSFHVAVENWGHDFNIGSVIRTANAFNAQAFHIVGKRRWNR
                     RGAMVTDRYQHEYHHPDVADLV"
BASE COUNT          506 a         1059 c         1123 g          489 t
ORIGIN      
        1 aggggagcag accgacgcgt tcgtggtgcg gaaggccggg aaggcccacg ggctgcagca
       61 acggatcgag gggccatcga tcgcaggccg ccgggtcgtg atcgtggagg acacctcgac
      121 cacaggcgcc tccccgctcg aggcggcgaa cgcggcccgc gaggcgggag ccgaggtcgt
      181 ggcggtagcc acgatcgccg accgggcaac gggagcggcc gagaagttcg cagaggccgg
      241 tcttgagtac cgtttcgtgt acgggctcga cgagctcggc ttggcgtgac ctgagccgcg
      301 cggcacacga ggggacggtg ggggcatgga cgcaccgatc aaggtcaacg gactgcgcaa
      361 ggtctacgca ggcaaggccg cggtcgacgg tgtcgacctg cagatcgaga ccggcgaggt
      421 gttcgccctc ctgggcccca acggtgctgg caagacgaca acggtggaga tcttggaagg
      481 cttccgccgt cgggacggcg gcgaggtcaa ggtgcttggg caggaccctc agtccgccgg
      541 gctgagctgg cgaagccgga tcgggatggt gctgcaaggc tcgacgggtc tcgacctgct
      601 cacggcgcgc gaggcgctcg ccagcaccgc caaggtctat ccccgggcca gggacgtcga
      661 cgaggtgatg gacgcggtcg ggttgagcga gaaggcgaac gaccggatcg gtcgtctcag
      721 cggcgggcag cgacgcaggc tcgacgtcgc cctcggcatc atcggcggtc cagagctgct
      781 gttcctggac gagcccacca ccgggttcga ccctcaggcg cgccgtgact tctggggtct
      841 gatcggctcg ctcgccgacg gaggcacgac catcctgctg accacgcact acctcgacga
      901 ggccgagcat ctcgcccacc gggtcggcgt gatcgccgcg ggtcagatgc tggccgtgga
      961 caccccggcg aacctcggcg gtcgagcctc ctcgcgggcc accgtcagct gggaggacct
     1021 cgcgggcgtg cggcatacca ccaccactga cacgcccacc caagtggtgg ccaccctcgc
     1081 cacggagctg gggggcgagg tgcccaagct caccgtcagc cgcccctcgc tggaggacac
     1141 ctatctcacc ctgatcgcgc cacacgtggt ggacgcgcgc gtgatggacc ctgaccccgc
     1201 gaacgaggtt gtcggatgaa cgccctagcc atcggtctgg atcggaccgt cctggagctc
     1261 aagctgtact tccgggagcg cgaagccgtc ttcttctcgt tcgccttccc catcctcatg
     1321 cttgggatgt tctcggtgat cttcgcgaac accttcggca agggcgacac cgcgggcgtc
     1381 aacgctgcac gcttcttcct gcctggcatg gttgcggccg gcgtgatgct gaccagcttc
     1441 cagtcgatcg cgctgagcgt ggcaaccgag cgcgacgacg gcaccctcaa gcggctgcgg
     1501 gccaccccga tgcccccggt ctcgtacttc ctgggcaagg ccggcctcgt tgccgtcacc
     1561 tcgttggccc agttcgcgct gctgatcgcc ctggccgggt tcgccttcgg ggtcgccctt
     1621 cccacggacg gggcgcactg gctgacgttc gcctgggtgt tcctcatggg ggttgcctgc
     1681 gggacagtgc tcgggatcgc ctactcgtcg ctggcgtcgt cggcacgttc ggtcggggcg
     1741 gtcgtcgcac cgacgctgat cctgcagttc atctcagggg tgtacttcgc gttccgggac
     1801 ctgccctcgt ggctcaagga ggtcgcggcg ctgttcccgc tgaagtgggt cgcccagggg
     1861 atgcgctcgg tcttcctccc cgacgactgg cggacccagg agatggccgg cgggtgggag
     1921 cacggccgca cagcgctcgt gctggcggtc tgggctgtgg tcgggatcgc cctgtgcctg
     1981 cggacgtttc gctggacccg ccgagggatg agctgagcgc ctgagagcgt gctgcggcta
     2041 cgcccggccg tcgcggaccg cttcggggcg ctccgtgtgc tcggcgggct cgtccgcgag
     2101 aacctcggcg gtcggcccag agcgcctggc ccgcaggacc tcgacgacca tcggaacgag
     2161 ggacagcagc acgatgccga agatggccag ttccaggtgg tccttcagcg cggggaacga
     2221 cttgccgagg aagtaaccga gcagggtgac ggcccacacc cagccgaccg cgccgacgcc
     2281 gctccagacg aggaagtgcc gccggtccat ccggctcacg ccggcgacca gggtgatgaa
     2341 cgtgcggacg accggcacga accgaccgat gaccagggcc ttggcgccgt gcttctcgaa
     2401 gaaggcgtgg ctctggtcga agtacttctt cttgagcagg cggccgtcgc gctcgtaaag
     2461 cggagtgccc actgctcgcc cgatctcgta cccggcgacg ttgcccgcga aggcggcgat
     2521 gctcagcagc accatcgcga ggacgaggtt catgctgaag tcgcccgtgc tgacgaacaa
     2581 cccgatcgcg aacagcagcg agtcgccggg cagcagcggg aacagcagcc cgcactcgac
     2641 gaagacgatc gcggccgcga cccagaagaa ctggttgccg aagtggtgga ggagccactg
     2701 ggggtccatc caggtcgtgc tcagggaatg catcacccgc ctagggtatg ccgagctgcc
     2761 tcggtctgcc ctgagcggca cctgagcgcg cccctagggt gagcccgtga tcagtccagt
     2821 gggtgagcct gtgagtgagc aggtcggagt cggtccgtgg gaaggcccgt ggcccagcgg
     2881 ggatcactgg gaccccgagc tcttgcgcga gggggaccgg cgcaacgtcg tggacgccta
     2941 ccggtactgg cgtcacgagg ccatcgtcgc cgacctcgac acgcgacgtc acagcttcca
     3001 tgtcgccgtg gagaactggg gccacgactt caacatcggc tcagtcatcc gcaccgcgaa
     3061 tgccttcaac gcccaggcgt tccacatcgt gggcaagcgg cgatggaacc gcaggggtgc
     3121 gatggtcacc gaccggtacc agcacgagta ccaccacccc gatgtcgcgg acctcgt
//
LOCUS       DASYFY010000286         2518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1702221, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000286 DASYFY010000000
VERSION     DASYFY010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1702221"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..516)
                     /gene="rplM"
                     /locus_tag="VGN19_05910"
     CDS             complement(73..516)
                     /gene="rplM"
                     /locus_tag="VGN19_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019309628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEV7195455.1"
                     /translation="MRTFTPKPAEVTRTWHVIDATDVVLGRLASHTAVLLRGKHKTTF
                     APHVDGGDFVIIINAEKVALTGAKLEQKKAYRHSGFPGGLKSTSYTELLAKNPEKAIE
                     KAVRGMLPRTTLGRQQLTKLKVYAGAEHPHAAQKPVPFEITQVSQ"
     gene            776..1381
                     /locus_tag="VGN19_05915"
     CDS             776..1381
                     /locus_tag="VGN19_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013837575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEV7195456.1"
                     /translation="MSTEGPSDYSGIRLDATALKTLAHPLRSRLLGALRKAGPATATD
                     LAARLGTNSGATSSHLRRLESVGLVADTGEGEGKRRLWRASTESHQYEPSDFVGDEDA
                     ETALNWLVRDYIRHLGEQFERWLDVEGSWPTPWRDAAGMSDTFVIATPEQLQELKAEL
                     DDVVMRYRRVGQGNPSARRLAVYSVIYPLDLDRIPRAQEQS"
     gene            1378..>2518
                     /locus_tag="VGN19_05920"
     CDS             1378..>2518
                     /locus_tag="VGN19_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013837576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195457.1"
                     /translation="MKTEPLSPAAARRVFLTLTFTRWFPVGLVVGLMTLLPLERGLSV
                     AQALSAASVSGWVVFALELPTSGFADALGRRPVWVAAAALNVVAALVYLVAHSFWTFA
                     LGAFLTGVFRALDSGPLEAWFVDTVHASEPDADVGRSLSAQSGTVGVAIGLGALVSGA
                     MVWWHPYHAQPALFLPFALLVVLNVAHLAAVLLLLKEPRTHVDTTGARRALASARQAP
                     TIVRDGLGLLRVNRPLRGLVLVEVFWSVAMVVFETFQPIRLAQLVGGEERAGALVGPI
                     SSAAWGVFALGAGLAGLSSRRIGVAWTAVIARILNGLGAVAMGLVAGPVALVAAYLVT
                     YGLHGTGGPMHAALLHREARARNRATVLSMNSMMMFATYSLVAPLL"
BASE COUNT          364 a          846 c          864 g          444 t
ORIGIN      
        1 aggtgtactc ggtcagctcg acctcgtcac cctcgacggt ggtctcagtg ttgatgtcag
       61 tcacgatgat ccttactggg agacctgggt gatctcaaac gggacgggct tctgggcagc
      121 gtgcgggtgc tcggcgccgg catagacctt gagcttggtc agctgctggc ggcccagggt
      181 ggtcctgggc agcatgccgc ggacggcctt ctcgatggcc ttctcggggt tcttggcaag
      241 cagctcggtg tacgaggtgc tcttgagccc gcccgggaag ccagagtggc ggtacgcctt
      301 cttctgctcg agcttggcgc cggtcagggc aaccttctcg gcgttgatga tgatgacgaa
      361 gtcaccaccg tcgacgtgcg gggcgaacgt ggtcttgtgc ttgccgcgca gcaggacggc
      421 ggtgtggctc gcgaggcgac ccagcacgac gtccgtcgcg tcgatgacgt gccaggtgcg
      481 agtgacctcg gccggcttgg gggtgaaagt gcgcaaggta atggcccttt actgcagatc
      541 agtggtgctg ggactggtgt atgccgcgag cgcccgaggc gatcgcgctc cggagcgttg
      601 atggtcgcct gcgagggcgc acggcacaac agttctcaag tctagggggc aggtcaccga
      661 tgccaaaatc gccactgccc tgccaaaaaa cgaggcctga cctgcggaaa cgccctcagg
      721 atccgaacct gcagaagagt tgtgcataac aactgtgcat aggtattgtg cacacatgag
      781 cacggaaggc ccctcggact actccggcat tcgcctcgac gcgaccgcgc tgaagaccct
      841 cgcgcatccg ttgcgctcgc ggctgctcgg cgcgctacgg aaggctggcc ctgccacggc
      901 caccgacctc gcggcgcgtc tggggaccaa ctcgggggcg accagctccc acctacgccg
      961 tctggagtcc gtgggtctgg tcgcggacac cggcgagggc gagggaaagc gccgactgtg
     1021 gagggcctcc accgaaagcc accagtacga gcccagtgac ttcgtcggtg acgaagacgc
     1081 ggagaccgcc ctcaactggc tggttcgcga ctacatccgc cacttgggcg agcagttcga
     1141 gcggtggctc gacgtcgagg gcagctggcc gacgccgtgg cgagatgccg cgggcatgag
     1201 cgacaccttc gtcatcgcca cccccgagca gctccaggag ctgaaggccg agctcgacga
     1261 cgtggtcatg cggtaccgcc gggtcggcca gggcaacccg agtgcccggc ggctggcggt
     1321 ctacagcgtg atctacccgc tcgacctcga ccgcatccct cgcgcgcagg agcagtcatg
     1381 aagaccgaac cgctgtcccc cgcggccgcg cgtcgagtct ttctcacgct gacgttcacc
     1441 cgctggttcc cggtcgggct ggtcgtcggg ctcatgacgc tcctgccgct cgaacgaggg
     1501 ctgtccgtcg cccaggcact gtcagcggcc tcggtctcgg gctgggtggt cttcgccttg
     1561 gagctgccga ccagcgggtt tgccgatgcg ctgggccgac gccccgtgtg ggtggccgcc
     1621 gctgcgctca acgtggttgc ggccctcgtg tacctcgtgg cccactcgtt ctggacgttc
     1681 gccctcggcg cgttcctcac cggcgtcttt cgcgccctcg actccggccc actcgaggcg
     1741 tggttcgtcg acaccgtgca cgccagcgag ccagacgccg acgtcggccg ttcactatcc
     1801 gctcagagcg gcaccgtggg agtcgccatt ggcctcggcg ccctcgtttc gggagccatg
     1861 gtgtggtggc acccctacca cgcacaaccg gccctgttcc tgccgttcgc cctgctggtg
     1921 gtgctcaacg tcgcccacct ggcagccgtc ctgctgctgc tcaaggaacc caggacgcac
     1981 gtcgacacca cgggcgcacg cagggccctt gcctcggccc gccaggcacc caccatcgtg
     2041 cgcgacggac tggggctgct tcgggtcaac cggcccctgc gagggctcgt cctcgtcgag
     2101 gtcttctggt cggtggccat ggtcgtcttc gagaccttcc agccgattcg cctggcccag
     2161 ctcgtcggtg gcgaagagcg ggccggggct ctggtcggcc cgatctcctc ggcggcctgg
     2221 ggcgtgttcg cgctgggagc cgggctggcc ggcttgagct cgcgacggat cggggtggca
     2281 tggaccgccg tcatcgcacg gatcctcaac ggcctcggag ccgtcgcgat gggactggtc
     2341 gccggaccgg tggcgctcgt cgcggcatac ctggtcacgt atgggctgca cggcacgggg
     2401 ggaccgatgc acgccgccct gctgcaccgc gaggcacggg ctcgaaaccg ggcgacggtg
     2461 ctgtcgatga actcgatgat gatgttcgcg acgtacagcc tggtcgctcc cctgctcg
//
LOCUS       DASYFY010000287         2252 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1859164, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000287 DASYFY010000000
VERSION     DASYFY010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1859164"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..744
                     /locus_tag="VGN19_05925"
     CDS             67..744
                     /locus_tag="VGN19_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195458.1"
                     /translation="MTRVLLAEDDPAISEPLARALRREGYDVDVRADGRAALEASAAN
                     PDLVVLDLGLPFVDGLEVCRRIRAEGRTVPVLILTARADEVDTVVGLDAGADDYVTKP
                     FRLAELLARVRALLRRTPTDASTTAELVRIDPEGRRAWFNEEELQLTAKEFDLLRVLV
                     REQGKVVSREQLMREIWETAWFGSTKTLDMHISVLRRKLGDDAAQPRYIATVRGVGFR
                     FERGDEV"
     gene            754..1776
                     /locus_tag="VGN19_05930"
     CDS             754..1776
                     /locus_tag="VGN19_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7195459.1"
                     /translation="MRQQLIRSTVLAVVLAIAIIMIPVGVGLWRASEGNGLIHDWLGQ
                     GMPLGSSLRITALLLALCVLALGIGVVVAIQQAKRLARPMTMLADRAERLGAGESRIQ
                     PLNSGIAEVDQVSQVLARSAQRLTKSLASERDFAADASHQLRTPLTALLMRLEEIGVT
                     DDLEVVQEEASIAIAQVERLTRVVDDLMSRTRRGGDDPKASVSLDSVIAALQREWQPA
                     FEQARRSVRVHGERGLAVQAKPVDLSQVLSTLLENSLRHGRGTVDVHARRSGPSVVVE
                     VSDQGEGVPAAIAPHIFERSVTTTGTGLGLALARDLAESNGGRLELIQAQPAIFALFL
                     SESDSA"
     gene            complement(1780..>2252)
                     /locus_tag="VGN19_05935"
     CDS             complement(1780..>2252)
                     /locus_tag="VGN19_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEV7195460.1"
                     /translation="DRLRGAVDVLYREMIKFGVVGGVSFVVDVGLMNVLRHTVMEDKP
                     TGAKLVSATVATAIAWIGNRTWTFRHRQNRPAHHEAALFILTNGVALLIGAGCIAFSH
                     YGLGLTSLTADNIANIVGIGFGTLFRFWAYRAFVFGNEPLADTSPLAEHETRGS"
BASE COUNT          335 a          770 c          795 g          352 t
ORIGIN      
        1 actgagaaac gccgaccggt gtggcccggt cgctgagttg gcccgccgtt ccctacgatc
       61 aagcccatga cccgtgtgct cctcgctgag gacgaccctg ccatctccga accgctggcc
      121 cgcgccttgc gtcgggaggg gtatgacgtc gacgtgcggg ccgacggacg agccgccttg
      181 gaggcctccg ctgcgaaccc cgacctcgtc gtcctcgacc tcgggctgcc gttcgtcgat
      241 ggcctcgagg tctgccgccg catccgggcc gagggccgca ccgttccggt gctgatcctc
      301 accgcgcgcg ccgacgaggt cgacacggtg gtcggcctgg acgcaggggc tgacgactac
      361 gtcaccaagc cgttccggct ggccgagctg ctcgcccggg tccgcgcgct gcttcggcgt
      421 accccgacgg atgcgagcac caccgctgag ctcgtgcgga tcgaccctga ggggcgccgt
      481 gcctggttca acgaggagga gctccagctc accgcgaagg agttcgacct gctccgggtg
      541 ctcgtccgcg agcagggcaa ggtcgtctcg cgcgagcagc tcatgcgcga gatctgggag
      601 acggcgtggt tcgggtcgac caagaccctg gacatgcaca tctcggtgct gcgtcggaag
      661 ctcggcgacg acgcggccca gccgcgctac atcgccacgg ttcgcggggt cggtttccgt
      721 ttcgagcgtg gcgacgaggt ctgaggccag ctcatgcggc aacagctgat ccggtccacc
      781 gtgctcgccg tcgtccttgc gatcgcgatc atcatgatcc ccgtgggcgt cggcctgtgg
      841 cgtgcgagcg agggcaacgg cctgatccac gactggctcg gtcaaggtat gccgctcggc
      901 tcctccctgc ggatcaccgc gttgctgctg gcgctatgcg tgctggcgct gggcatcggg
      961 gtggtcgtgg ccatccaaca ggccaagcgg ctcgcgcgac ccatgaccat gctggccgac
     1021 cgagccgaac ggctcggcgc tggggagtcc cgcatccagc cgctcaactc gggcatcgcc
     1081 gaggtcgacc aggtctccca ggtgctggcc cgaagcgccc agcggctgac caagtcgctg
     1141 gcctccgaac gagacttcgc cgccgacgcc tcgcaccagc tgcgcacccc tctgacggcg
     1201 ctgctgatgc gcctggagga gatcggggtc accgacgacc tcgaggtcgt ccaggaggag
     1261 gcgagcatcg ccatcgccca ggtggaacgg ctcactcggg tggtggacga cctgatgtcc
     1321 cggaccaggc ggggtgggga cgaccccaag gcgtcggtct cgctggactc cgtcatcgct
     1381 gcgctgcagc gggagtggca gcccgccttc gagcaggcca ggcgcagcgt ccgggtccat
     1441 ggggagcggg ggctggccgt gcaggccaaa cctgtcgacc tgtcccaggt gctctccacg
     1501 ctgctcgaga actcgctgcg gcacgggcga ggcacggtgg acgtccacgc tcggcgcagc
     1561 ggaccatcgg tggtcgtgga ggtcagcgac cagggcgagg gggtgccggc ggcgatcgcc
     1621 ccgcacatct tcgagcggtc ggtcacgacc actggtactg gtctgggcct ggcgctcgct
     1681 cgcgaccttg ctgagtccaa cggggggcgg ctcgagctca tccaggccca gcccgccatc
     1741 ttcgcgctgt tcctcagcga gtccgactcg gcctgacggt caggacccgc gggtctcgtg
     1801 ctcggcgagc ggagaggtgt cggccagggg ctcgttgccg aacacgaacg cccggtaggc
     1861 ccagaaccgg aacagggtgc cgaagccgat gccgacgatg ttggcgatgt tgtcagcggt
     1921 cagcgacgtg agccccaggc catagtgcga gaacgcgatg cagcccgctc cgatgagcag
     1981 cgccaccccg ttcgtgagga tgaacagggc agcctcgtga tgggccggcc ggttctgacg
     2041 gtgccggaaa gtccaggtgc ggttgccgat ccaggcgatc gcggtggcca ccgtggccga
     2101 gaccagtttg gccccggtgg gcttgtcctc catgacggtg tgccgcagca cgttcatcag
     2161 gcccacgtcg acgacgaacg agacgccgcc gacgacgccg aacttgatca tctcgcgata
     2221 gagcacgtcg accgctccgc ggagccggtc ag
//
LOCUS       DASYFY010000288         1794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_546934, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000288 DASYFY010000000
VERSION     DASYFY010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546934"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..>1794
                     /locus_tag="VGN19_05940"
     CDS             175..>1794
                     /locus_tag="VGN19_05940"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010078848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEV7195461.1"
                     /translation="MTQTPTRPQRQAGKATGAWADGDRTPLNPNEEFKQADDGLNVRA
                     RIEQIYAKDGFASIPGEDLRGRMRWWGLYTQRKPGIDGGKTATLDPSELDDEYFMLRV
                     RSDGGALDGDQLRTIAEISQEFARDTADVTDRQNIQLHWIRVEDVPEIWQRLESVGLT
                     TAEACGDTPRVILGSPVAGIAADEVVDGSPAVREILERYIASPEFSNLPRKFKTAISG
                     SPSLDVAHEVNDVSFVGVEHPEHGPGFDLWVGGGLSTNPMFAQRLGAWVPLEEIPEVW
                     KGVVSIFRDYGYRRLRNRARLKFLMADWGPERFREILETEYLGRPLIDGPAPQPPSDR
                     RRDHVGVHPQKDGNFWVGVAPVAGRVSGTTLYAVSELAARHGSGRVRLTAHQKLLVLD
                     VPQAEVAALTKDLQAIGLPSAPSEWRRGLMACTGIEFCKLALVETKARAHTVIAEMER
                     RLPDFDVPFSIHINGCPNSCARTQVADVGLKGMVQTDDEGNLVEIFQVHLGGGLGTEP
                     QLARKTRALKVRAEDLPDYVERLAGRFLEQRE"
BASE COUNT          300 a          631 c          604 g          259 t
ORIGIN      
        1 aacctctgct tgcagacgtt cgtgcccgca gcccacgttg caccctgcac tcacggcagt
       61 aacccttgct agcagaggtt gctgcaaacc ggccatcgcc cactgaacgg gggggaattg
      121 gggtcggata atggacggtt atgcaatcca taagggattg ggcagaatag tcaggtgacg
      181 cagaccccga cccgtcccca gcgccaagcc ggtaaggcca ccggcgcctg ggcagatggc
      241 gatcgcacgc ccctgaaccc caacgaggag ttcaagcagg ccgacgacgg cctcaacgtg
      301 cgggcccgga tcgagcagat ctacgccaag gacgggttcg ccagcatccc gggcgaggac
      361 ctgcgcggtc gcatgcgctg gtggggcctg tacacccagc gcaagcccgg catcgacggc
      421 ggcaagaccg ccaccttgga ccccagcgag ctcgacgacg agtacttcat gctgcgggtt
      481 cgcagcgacg gcggcgcgct cgatggtgac cagctgcgca ccatcgccga gatcagccag
      541 gagttcgcgc gggacaccgc cgacgtcacc gaccgtcaga acatccagct gcactggatc
      601 cgggtggagg acgtcccgga gatctggcag cgactcgagt ccgtcggcct gaccaccgcc
      661 gaggcgtgcg gcgacacccc ccgagtcatc ctcggctcac cggtggcggg gatcgccgcc
      721 gacgaggtcg tcgacggcag cccggcggtc cgcgagatcc tcgagcggta catcgccagc
      781 ccggagttct ccaacctgcc ccgcaagttc aagacggcca tctcgggcag cccgagcctg
      841 gacgtggccc acgaggtcaa cgacgtgtcg ttcgtcggcg tcgagcaccc tgagcacggt
      901 ccgggtttcg acctgtgggt cggcgggggg ctctccacca acccgatgtt cgcgcagcga
      961 ctgggcgcct gggtcccgct cgaggagatc cccgaggtgt ggaagggcgt cgtctcgatc
     1021 ttccgcgact acggctaccg gcgactgcgc aaccgtgccc ggctcaagtt cctcatggcg
     1081 gactggggcc cggagcggtt ccgcgagatc ctcgagaccg agtacctcgg gcggccgctg
     1141 atcgacggcc cagccccgca acctccgtcg gaccgtcgcc gcgaccacgt gggcgttcac
     1201 ccgcagaagg acgggaactt ctgggtcggc gtcgccccgg tggccggccg ggtcagtggc
     1261 acgacgctgt atgccgtgtc cgagctcgcc gcgcgccacg gttctggtcg ggtccgcctg
     1321 accgcccacc agaagctgct cgtgctcgac gtaccccagg ccgaggtcgc cgcgctgacg
     1381 aaggaccttc aggcgatcgg tctgccctcc gcgcccagcg agtggcgccg aggcctgatg
     1441 gcctgcaccg gcatcgagtt ctgcaagctg gccctggtgg agaccaaggc ccgcgcccac
     1501 acggtcatcg ccgagatgga gcgtcggctg ccggacttcg acgtcccgtt ctcgatccat
     1561 atcaacggct gccccaactc ctgtgcccgc acccaggtgg ccgacgtcgg tctcaagggc
     1621 atggtccaga ccgacgacga ggggaacctg gtcgagatct tccaggtgca cctcggcgga
     1681 gggctcggca ccgagccgca gctggcccgc aagacccggg cgctcaaggt gcgcgccgag
     1741 gacctaccgg actatgtcga gcggctggcc gggcggttcc tcgagcagcg cgag
//
LOCUS       DASYFY010000289         3168 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1807743, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000289 DASYFY010000000
VERSION     DASYFY010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3168
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1807743"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1052)
                     /locus_tag="VGN19_05945"
     CDS             complement(<1..1052)
                     /locus_tag="VGN19_05945"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195462.1"
                     /translation="MRSRWNLPIWVLYAGFCLLVLGFIVRGLEFGVPWSHPYQVTADF
                     SDAGSILANNEVFMNGTKVGYVKAVSVSGGQAKVQMILDNRNGVPLHPDATAQVRKKN
                     LLGETYIDLTRGTGPGQIQSGGVIPVEHTVPITEIDQVLAIFDPATVQRVQLLINALG
                     EGTTNNGDRMNSSASSLNTLVTVLNGPAVELSARKQQVTDIVLELQKFYDVLAKQREQ
                     VRQEFGTWAAVMGQLAAQEQSIGGTVQQADTLLQNLDVLVTGEGGNLRATLTELPGTL
                     TQLNSFLTQSTGILGNLSHYRTAIHDVFPHLGSSFADTDPANNNQHFWSVFSVNCPSN
                     CTSTAEQTTPNSSAPNA"
     gene            complement(1055..2182)
                     /locus_tag="VGN19_05950"
     CDS             complement(1055..2182)
                     /locus_tag="VGN19_05950"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195463.1"
                     /translation="MSKSTVAGVAVAAVLVGGAGFALVSPHALGTKYHQFQITFPTGD
                     GLVSGSDVLEAGSKIGTISEIQPTQDDNALVTVQIADDHWPLHTGITADIRPKSLLGE
                     KYVDIHDGSTSKPAFDASTVLHETQQAVPVELDQFINSLDAPTRNAARVLLNDLGAGV
                     AGRGQSLNEAIAAGKTNLANLAVFGTTLNNRDPDLDRILVGLDGVLSKLTTSDQLNQL
                     SQLITNGQQTLNAIETQQTAFSRQFVDAQTALAELNTAIDSAVPSLRTTLNIAPQLLQ
                     ATSQESNLLAFLGSKANNHTVLSALDQGLVQGPSTTGGALETTNGGNPQPIFRICLVN
                     PNMGGSSCVGSGYSSPGAYATPASFDAGQGDMNVLASWMGA"
     gene            complement(2196..>3168)
                     /locus_tag="VGN19_05955"
     CDS             complement(2196..>3168)
                     /locus_tag="VGN19_05955"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195464.1"
                     /translation="KPPATTATKSPDRATAAAPPAPPAPPAAPAAPAPNGSSPAKRNV
                     PRGDHPAYTDLSRPLGDRPESQSQSTWEKEAVIELRNVHKAFGQFKVLDGVTCRIPKG
                     EISVLMGPSGTGKSVTLRHIVGLLPPDSGDIFVADRDVPLLNEDELLELRRGIGMLFQ
                     DGALFSSMSLYDNVAFPLRQHTKKSEGEIREIVMDRLTEVGMAGAEKRMPNELSGGMR
                     KRAGFARALVMEPKILLFDEPDSGLDPVRTTLLCDLIREISAKYKATSIVVSHDVGAV
                     RRFADNIGILYKGKMRHFGNKKEIEESDDEFVHQFFNASGEGPLGMD"
BASE COUNT          434 a         1022 c         1117 g          595 t
ORIGIN      
        1 gcgttggggg cgctggaatt gggggtggtc tgctccgcgg tgctggtgca gttgctgggg
       61 cagttgactg agaagaccga ccagaagtgt tggttgttgt tggcggggtc ggtgtcggcg
      121 aacgagctcc ccagatgggg gaagacgtcg tggatcgcgg tgcggtagtg gctgaggttg
      181 ccgaggatcc ctgtgctctg ggtgaggaag gagttcagct gggtgagcgt gccgggcagc
      241 tccgtgagcg tggcccgcag gttgcccccc tcaccggtga ccagcacgtc gaggttctgg
      301 agcagcgtgt cggcctgctg cacggtgccg ccgatcgact gctcctgggc cgccagctgg
      361 cccatcacag cggcccacgt gccgaactcc tggcgcacct gctcacgctg cttggcgagc
      421 acgtcgtaga acttctgcag ctcgagcacg atgtcggtga cctgctgctt gcgggccgac
      481 agctccaccg ccggaccgtt gaggaccgtg accagggtgt tcagcgagct cgccgagctg
      541 ttcatccggt cgccgttgtt ggtggtccct tcgccgagcg cgttgatgag cagctgcacg
      601 cgctgcacgg tggcggggtc gaagatggcc agcacctggt cgatctcggt gatcggcacg
      661 gtgtgctcca ccgggatgac gcctcctgac tggatctggc ccgggccggt gccgcgggtg
      721 aggtcgatgt acgtctcgcc gagcaggttc ttcttgcgga cctgggcggt ggcatccggg
      781 tgcagaggca caccgttcct gttgtcgagg atcatctgca ccttcgcctg cccgccgctg
      841 acgctcaccg ccttgacgta gccgaccttg gtgccattca tgaacacctc gttgttggcg
      901 aggatgctgc ccgcgtccga gaagtcggcg gtcacctggt atgggtggct ccacggcaca
      961 ccgaactcca ggccgcgcac gatgaacccg agcacgagca ggcagaaacc cgcgtagagc
     1021 acccagatcg gcaggttcca gcggctgcgc atggctacgc tcccatccag gaggcgagca
     1081 cgttcatgtc accctggccg gcgtcgaacg atgccggcgt cgcgtacgcg ccgggcgacg
     1141 agtacccgct gcccacgcac gaggagccac ccatgttcgg gttgaccagg cagatgcgga
     1201 agatcggctg cggattgccg ccattggtgg tctcgagcgc accaccggtg gtgctgggtc
     1261 cctggacgag cccctggtcg agcgcgctga gcacggtgtg gttgttggcc ttcgaaccga
     1321 ggaacgcgag caggttcgac tcctggctcg tggcctggag gagttgcggc gcaatgttga
     1381 gcgtggtgcg cagcgagggc acggcgctgt cgattgccgt gttgagctcg gccagcgcgg
     1441 tctgcgcgtc gacgaactgc cggctgaacg cggtctgctg cgtctcgatg gcgttgagcg
     1501 tctgctggcc gttggtgatg agctggctca gctggttgag ctggtcgctc gtggtgagct
     1561 tgctcagcac gccatcgagc ccgaccagga tgcggtcgag gtcggggtca cggttgttca
     1621 gcgtggtgcc gaacaccgcc aggttggcca agttcgtctt gccggcggcg atggcctcgt
     1681 tgaggctctg gccgcggccc gcgaccccgg cgccgaggtc gttgagcagg acccgggcag
     1741 cgttgcgggt gggcgcatcg aggctgttga tgaactggtc gagctccacc gggacggcct
     1801 gctgggtctc gtgaagcacg gtgctggcgt cgaaggccgg cttgctggtg ctgccgtcgt
     1861 ggatgtcgac gtacttctcg cccagcagcg acttgggccg tatgtccgcg gtgatccccg
     1921 tgtgcagcgg ccagtggtcg tcagcgatct gcacggtgac cagggcgttg tcgtcctggg
     1981 ttggctggat ctcgctgatg gtgccgatct tcgagccggc ctcgagcacg tcgctcccgg
     2041 agacgaggcc gtcgccggtg gggaaggtga tctggaactg gtggtacttg gtgcccaggg
     2101 cgtgcggaga cacgagggcg aaccccgctc ctccaacgag gaccgcggcc actgcgactc
     2161 ctgcgaccgt cgacttggac acgctcacct tcctgtcagt ccatccccag cggcccctca
     2221 ccggaggcgt tgaagaactg gtggacgaac tcgtcgtccg actcctcgat ttccttcttg
     2281 ttgccgaagt ggcgcatctt ccccttgtag aggatcccga tattgtcggc gaaacggcgc
     2341 accgccccga cgtcgtggct caccacgatc gacgtcgcct tgtacttggc gctgatctcc
     2401 cggatgaggt cgcacagcag cgtcgtccgc accgggtcca gccccgagtc gggctcgtcg
     2461 aagaggagga tcttcggctc catcaccagc gcccgggcga acccggcgcg cttgcgcatc
     2521 cccccgctca gctcgttggg catgcgcttc tccgcccccg ccatgcccac ctcggtgagc
     2581 cggtccatga cgatctcgcg gatctccccc tcgctcttct tggtgtgctg gcgcagcggg
     2641 aaggccacgt tgtcgtacag gctcatcgag ctgaacagcg ccccgtcctg gaagagcatg
     2701 ccgatccccc ggcgcagctc gaggagctcg tcctcgttga gcaggggcac gtcccggtcg
     2761 gccacgaaga tgtccccgct gtccggcggc agcagcccca cgatgtggcg cagggtcacg
     2821 ctcttgcccg tccccgacgg gcccatcagc acgctgatct cccccttggg gatccggcag
     2881 gtcaccccgt ccagcacctt gaactgcccg aacgccttgt ggacgttgcg cagctcgatc
     2941 accgcctcct tctcccacgt cgactgcgac tgcgactccg gacggtcccc caacggcctg
     3001 ctcaggtccg tgtacgccgg gtggtcgcca cggggcacgt tcctcttggc aggcgagctc
     3061 ccgttcggcg ccggggccgc tggggcagct gggggcgccg gcggggccgg gggcgccgcc
     3121 gcggtggccc ggtcgggcga cttcgtggct gtggtggctg gaggtttg
//
LOCUS       DASYFY010000290         4457 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1072913, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000290 DASYFY010000000
VERSION     DASYFY010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4457
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1072913"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..146)
                     /locus_tag="VGN19_05960"
     tRNA            complement(71..146)
                     /locus_tag="VGN19_05960"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(111..113),aa:His,seq:gtg)
     gene            complement(288..917)
                     /gene="orn"
                     /locus_tag="VGN19_05965"
     CDS             complement(288..917)
                     /gene="orn"
                     /locus_tag="VGN19_05965"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HEV7195465.1"
                     /translation="MPANPTERSVNDRIVWIDCEMTGLSLEHDALIEVAALVTDFELN
                     QLGEGVDVVIKPPAQALEQMDDFVRGMHTTSGLLEELDGGMTMSEAQELVLNYVREWV
                     PEPGKAPLGGNTVATDRGFLARDMVELEAHLHYRIIDVSSIKELSRRWYPRAYFSAPA
                     KSGGHRALADIRESIAELRYYREAVFVPAPGPDSDSAKAIAARHVVDPS"
     gene            983..2146
                     /locus_tag="VGN19_05970"
     CDS             983..2146
                     /locus_tag="VGN19_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEV7195466.1"
                     /translation="MTWGEQRPYAATGDEGPRGAGRQALRGWLLSGLMLVGFTFAAVV
                     VAAYYGATLGLVTTLFAILLAAIPLGVVIPSFLWLDRFEAEPNRYLLVAFLWGALVAA
                     LVAALFNTGAELAFRSATGTATTAMAATALISAPLVEEACKGLLVVLVWRLRRREFDG
                     IVDGMVYAGIVAAGFAFTENIQYLGLAYQQGGGHALTGTFVARCLVSPFAHPMFTLLT
                     GIGVGIAATTRSRVLTILAPLGGYVLAALSHALWNLGSITAGRGTPAVFVGVEVPVFL
                     AFVGFVVWARRREGRMIGRYLSEYADAGWLSPSEVHMLSTMSGRRAAKVWARSTGGAA
                     ALRSMRRFQDTASELALLRGRMHHLAADATALETEQQLLGAITARRRELLGVP"
     gene            complement(2162..2854)
                     /locus_tag="VGN19_05975"
     CDS             complement(2162..2854)
                     /locus_tag="VGN19_05975"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HEV7195467.1"
                     /translation="MNPQVIVYARTVSADPTQLASLAALLDDTERERASRRHNPARFI
                     TAHALLRTVAGEWTGQQPADVAFERECVTCGSSVHGKPVVRGHDDVFVSLSYAGDLAL
                     VSATLVGQTGVDVEQVDGAEFEGFEAVTLAEDELPGFEGVVSADLAASRARVWARKES
                     VLKASGHGLVVDPRDVVVTAPALPAGLVQWRGDRPLTAPAQLYDVALPDRRYAAAVTV
                     LTEQPLEVQVRC"
     gene            2908..2981
                     /locus_tag="VGN19_05980"
     tRNA            2908..2981
                     /locus_tag="VGN19_05980"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2942..2944,aa:Arg,seq:tct)
     gene            complement(2943..3554)
                     /gene="thpR"
                     /locus_tag="VGN19_05985"
     CDS             complement(2943..3554)
                     /gene="thpR"
                     /locus_tag="VGN19_05985"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HEV7195468.1"
                     /translation="MRGSHNGPMRVFVALTPPDEAVEDLVAFLEPRRRAGPELRWTDP
                     SQWHVTLAFMATVTTDVVDRIAETVIEAASWHPPVQLRLAGVGTFPDVTDARVLWTAV
                     DGDLDAFARRMRGACNRAGGAPEGGGFHGHLTVARFPRPTEATRWVRVLDGYAGPPWV
                     AREVHLVVSHPGNGHGRVHELFATAPLSGVRCPQQDSNLRPRD"
     gene            3604..4329
                     /locus_tag="VGN19_05990"
     CDS             3604..4329
                     /locus_tag="VGN19_05990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195469.1"
                     /translation="MGRQLAPPRLWFVTVRVSELAAVALVVGAALELWTAFQTSAQIP
                     SADGTPGATPSFMRRIVTTAFYSGVFRTPLNLVLAALLVGFAVGVLVTAKPVWNARLL
                     RWEVLATWGVVSASVLTVALINTIAMFGDSPFASTDPSVVSVDAGPSLLQQGLTALAW
                     PVAAGLVLVGGGLWWLRLSPETDPVPAPGSERRVPDPPAQGDGITIDGVEQIEPVDRS
                     THPEAPGGNGATTSGYEDYFRRF"
BASE COUNT          651 a         1561 c         1521 g          724 t
ORIGIN      
        1 ctacgagacg gtcacgatgc gcgtcgcata gaagagcccc ggcctcgaac gagaccgggg
       61 atcttcggtg tggggtgagt gacgggactt gaacccgcga catctgcgac cacaacgcag
      121 cgctctacca gctgagctac acccaccatg catcacggcc ggactgggcc ggccgcgcaa
      181 gcgacgacca tcgtacccgg ttccgcggag tgctcgtgac cactccccat ccggccgcga
      241 aaggcgtcag cgaaccatcg aggcggaggt ctcaacccct cgaggagtca gctggggtcg
      301 accacgtgtc gagccgcgat cgccttggcg ctatccgaat ccggaccggg cgcagggacg
      361 aacacggctt cccggtagta ccgaagctcg gcgatcgact cacggatatc cgccagggcg
      421 cggtgcccgc ccgacttggc cggcgcgctg aagtacgccc gcggatacca gcgccgcgac
      481 agctccttga tcgacgacac atcgatgatc cggtagtgaa ggtgcgcctc gagctcgacc
      541 atgtcgcggg ccaggaagcc ccggtcggtg gcgacggtgt tcccgcccag gggggcctta
      601 cccggctcgg gcacccactc gcgcacgtag ttcaggacga gctcctgcgc ctccgacatc
      661 gtcatgccgc cgtcgagctc ctcgagcagc cccgaggtcg tgtgcatccc gcgaacgaag
      721 tcgtccatct gctccagcgc ctgcgccggt ggcttgatga cgacgtcgac cccctcgccg
      781 agctggttca gctcgaagtc tgtgaccagc gcggccacct cgatcagggc gtcatgctcg
      841 agtgacaagc cggtcatctc gcagtcgatc cagacgatgc ggtcgttgac agagcgttcg
      901 gtggggttcg caggcaccgc accaccctaa ggcccgtttc gcaggcgcgt gcgtgttcgg
      961 ctgctgcact agcctgccca acatgacgtg gggagaacag cgtccgtatg ccgcgacggg
     1021 ggatgaggga ccacggggcg ccggtcgaca ggcgctccga ggatggttgc tgtccgggct
     1081 gatgctcgtc ggcttcacct tcgccgcagt cgtggtcgcg gcgtactacg gcgccaccct
     1141 cggcttggtc acgaccctgt tcgcgatcct gctggcggcc atcccgcttg gagtcgtcat
     1201 tccctcgttc ctctggctcg accggttcga ggccgaaccc aaccggtatc tcctggtggc
     1261 cttcctctgg ggggcgctgg tggcggcgct ggtggctgcc ctgttcaaca ccggtgccga
     1321 gctggccttc cgctcggcga ccggcacggc caccacggcc atggctgcga ccgcgctcat
     1381 ctcagcgccc ctggtcgaag aggcgtgcaa gggcctgctc gtcgtgctcg tgtggcggct
     1441 gcggcgccgg gagttcgacg gcatcgtcga cggcatggtc tatgccggca tcgtggctgc
     1501 gggattcgcg ttcacggaga acatccagta cctcgggctg gcctaccagc agggcggcgg
     1561 ccacgccctc accgggacgt tcgttgcccg gtgcctcgtg agcccgttcg cccacccgat
     1621 gttcaccctg ctcaccggca tcggggtcgg gatcgccgcg accacccgca gccgggtact
     1681 caccatcctg gcacccctcg gcggctatgt gctggccgcg ctgtcgcacg ccctgtggaa
     1741 cctcggttcc atcaccgcgg ggcgtggcac cccggcggtc ttcgtgggcg tcgaggttcc
     1801 tgtcttcctg gctttcgtcg ggttcgtggt gtgggcgcgt cgccgcgagg ggcggatgat
     1861 cgggcgctac ctgagtgagt atgccgatgc cggctggctc agcccttcag aggtgcacat
     1921 gctgtcgacc atgtctggac gcagggcagc caaggtgtgg gcccgttcga ctggaggggc
     1981 agctgcgctt cgttcgatga ggcgctttca ggacacggcg agcgagctgg ccctccttcg
     2041 cgggcggatg caccatctgg ccgccgatgc caccgcgctc gagaccgaac agcagctgct
     2101 gggcgcgatc acggcccggc ggcgggaact gctcggtgtg ccgtgacccc gccgcgctcg
     2161 gtcagcagcg cacctgcacc tcgagtggct gctcggtgag cacagtgacg gcagcggcat
     2221 accggcgatc gggcagtgcc acgtcgtaga gctgggccgg cgcggtcagc ggacggtcgc
     2281 cgcgccactg cacgaggccg gcggggagcg ccggagcggt caccaccacg tcgcgggggt
     2341 ccaccaccag cccgtgcccg gacgccttga ggacgctctc cttgcgagcc cacaccctgg
     2401 cccgagaggc ggcgaggtca gcggacacaa cgccctcgaa cccgggcagc tcgtcttcgg
     2461 ccagggtgac cgcctcgaaa ccctcgaact ccgcaccgtc gacctgctcg acgtccacgc
     2521 cggtctgccc cacgagggtg gccgacacca gggccaggtc gccggcgtac gacagggaca
     2581 cgaacacgtc gtcgtgacct cggaccaccg gcttgccgtg gacgctgctc ccgcaggtca
     2641 cgcactcgcg ctcgaaggcg acgtcagcgg gttgctgtcc cgtccattcg ccggcgaccg
     2701 tgcgcagtag ggcgtgcgct gtgatgaacc gcgcggggtt gtggcgccgt gacgcgcgct
     2761 cgcgctcggt gtcgtcgagg agggcggcca ggctggcgag ctgcgtcggg tcagcggaca
     2821 cggtgcgcgc gtagacgatg acctgcgggt tcacgtgctg atcatcccac cgcgcttaga
     2881 ctatgcgcgc ctgcagagcc gggcaccgcc ctcatagctc agctggatag agcaagagcc
     2941 ttctaatctc taggtcgcag gttcgagtcc tgctgggggc accgcacacc gctcagcggg
     3001 gccgtcgcga acagctcgtg gacccgacca tgaccgttgc cggggtgcga gacgaccagg
     3061 tggacctctc gcgccaccca cggtggaccg gcatacccgt cgagaacccg cacccagcgc
     3121 gtcgcctcgg tcggccgcgg gaaccgagcc accgtgagat gtccgtggaa gcctccaccc
     3181 tcaggcgccc cacccgcacg gttgcaggct ccgcgcatcc gtctcgcgaa cgcgtcgagg
     3241 tcgccgtcca ccgcagtcca cagcacgcga gcgtcggtca cgtccgggaa cgtcccgacg
     3301 ccagccagcc gaagctggac cggtggatgc caggacgccg cctcgatcac cgtctcggcg
     3361 atccggtcaa cgacgtccgt ggtcaccgtc gccatgaagg ccagcgtgac gtgccactga
     3421 ctggggtcgg tccagcgcag ctcgggacca gccctacggc ggggctcgag gaaggcgacg
     3481 agatcctcca cggcctcgtc cggcggcgtc agcgcgacga acactcgcat cggcccattg
     3541 tgactgcctc gcatccggct agattggggc gcggatcgcc tgaggggagg cacgatggtc
     3601 tgggtgggac gccagctggc gccaccacgc ctgtggttcg tcacggttcg agtcagcgag
     3661 ctggccgccg tggccctggt cgtgggcgcc gcgctcgagc tgtggacggc cttccagacc
     3721 agtgcgcaga ttccttcggc cgacggcaca cccggggcga ctccgtcctt catgcgccgc
     3781 atcgtcacga cggccttcta cagcggcgtg ttccgcaccc cgctgaacct ggtgctggcg
     3841 gccctcctcg tcgggttcgc ggtcggcgtg ctggtcaccg cgaaaccagt ctggaatgca
     3901 cgcctgctgc gctgggaggt cctcgcgacg tggggggtcg tctcagcgtc cgtgctgacc
     3961 gtcgccctga tcaacacgat cgcgatgttc ggcgacagcc ccttcgccag cacggatccc
     4021 tccgtggtct ctgtcgacgc cggcccgagc ctcctccagc aggggctgac cgccttggcg
     4081 tggcccgtgg cagcgggcct cgtgctggtg ggcggtggac tgtggtggct gcggctgtca
     4141 ccggagacgg atcctgttcc ggcgccaggg tcggagcgcc gcgtccccga cccgcccgcc
     4201 cagggcgatg gcatcacgat tgacggggtc gagcagatcg agccggtcga ccgctcgacg
     4261 caccccgaag cacctggtgg caatggtgcg accacgagtg ggtacgagga ctacttccgc
     4321 cgcttctagg aacttcaaac agaggccctc atcagggtgt cggcgtgcct gatgcccagc
     4381 gctcattggt taggcttgcg cccgtgaatc ctggggccga cgccatctct gtactgggcg
     4441 ccgtgtcgac cctgcgc
//
LOCUS       DASYFY010000291         2508 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1177000, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000291 DASYFY010000000
VERSION     DASYFY010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177000"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1022
                     /locus_tag="VGN19_05995"
     CDS             <1..1022
                     /locus_tag="VGN19_05995"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEV7195470.1"
                     /translation="LIEGTRGMSEQDVPLPTEDVDPETQALRTRAYLAAIQHPEPSRS
                     LLVAQGMHAEVVDRALAMLAAQGLVRLGPGGAIDVVPPDISLPVLASTYEQLARQTRS
                     AAHELAQVYFQARNTATVPDSSAIRILSSVDEIGPVTAEIVATGKEGVRCFRSVSPRT
                     KALFDSPMHSHEEPTRGAGGVVLPQTVVYDTQVLEFPGVLEILEARERGGEQFRFTTG
                     VPFSAVIVDDTAAVVDVSAFDPAGFGSALVRARSLVVALRALYDHLWNLGAPLQRAGQ
                     SASERRDQTILGLLAAGATDATIARQTGVSQRTVERRVRGLMDQVGASTRFQAGVQAA
                     RRGLL"
     gene            complement(1025..1843)
                     /locus_tag="VGN19_06000"
     CDS             complement(1025..1843)
                     /locus_tag="VGN19_06000"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195471.1"
                     /translation="MDTTTDLRVRMVEDHYVSVMRTLTSSTSSIVRRLPDEDVLGYVS
                     DIPFPLFSGAVAPSFAPGSEVRRAEEVLRVLSANGQPFQWWAGPRTRSPAIEDLLSAR
                     GLVTGGLTPGMHADLAAVDLTSQHGAVGEVGEVAEVGVTVCATEGEWLAANRVFVEAF
                     ELPGQLLDVFTRVWRDVPGLVQLVARLEGEPVGCAAGVALDGVMGVYNVGTVEAARRR
                     GVGRALTAAMMRIGRDQGCHSAILHASELGYPVYESLGFDHVTDVSQYVWLPPS"
     gene            2012..>2508
                     /locus_tag="VGN19_06005"
     CDS             2012..>2508
                     /locus_tag="VGN19_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HEV7195472.1"
                     /translation="MTGQDHPTTKATSAEVAREIAIEQTHVDLVYAELTKAQARAGLV
                     EADGLARGRTDRTGDVRDEELTGLFERDALVFNAARRRSTLDTQYEGLVFGRLDLDHA
                     MPRDAAPTESGPTDSGPIDSGDSGDSGDSSDSRDPGGSEARTRTAADREIRYIGRLGV
                     RDDEY"
BASE COUNT          390 a          921 c          841 g          356 t
ORIGIN      
        1 cgctcatcga agggacgcgg ggtatgtcag agcaggacgt gccgctgccc accgaggacg
       61 tcgaccccga gacccaggcg ttgcgcacgc gggcctatct ggccgccatc cagcaccctg
      121 aaccatcacg ctccctgctg gtcgcgcagg gcatgcatgc cgaggtggtc gaccgggcgc
      181 tggcgatgct cgccgcgcag gggctggtgc gcctcgggcc gggcggcgcg atcgacgtcg
      241 taccgcctga catctctctg cctgtcctgg cctccacgta cgagcagctc gcccgccaga
      301 ctcgctcagc cgcccatgag ctggcacagg tgtacttcca ggcccgaaac accgccaccg
      361 tgcccgactc ctcggcgatc cggatcctga gctccgtgga cgagatcggt cccgtgaccg
      421 ccgagatcgt ggccaccggc aaggaggggg tgcggtgctt ccgctcggtg tcgccgcgca
      481 cgaaggcctt gttcgacagt cccatgcact cccacgagga accgactcgg ggcgccggcg
      541 gcgtcgtact tccacagacc gtggtctacg acacgcaggt cctcgagttc cccggggtgc
      601 tggagattct cgaagccaga gagcgcggcg gcgagcagtt caggttcacc acgggcgtgc
      661 cgttctccgc cgtcatcgtc gacgacacgg ccgcggtggt cgacgtgagc gcgttcgacc
      721 ctgccggctt cgggtccgcc ctggtcaggg cccgctcgct cgtcgtggct cttcgggcct
      781 tgtacgacca cctctggaac ctcggggcgc cgctgcagcg agccggccag tcggcttcag
      841 agcggcgcga ccagacgatc ctgggcctgc tggccgccgg cgcgacggat gccacgatcg
      901 ctcgccagac gggcgtctcc cagcgcaccg tcgagcgtcg cgtgcgggga ctgatggacc
      961 aggtgggcgc gagcacgcgg ttccaggcag gcgttcaggc cgcacgccgc ggcctgctct
     1021 gagatcagga cggcggtagc cagacgtact ggctcacgtc cgtgacgtgg tcgaaaccca
     1081 ggctctcgta cacggggtag cccagctcgc tggcgtgcaa gatcgcgcta tgacagccct
     1141 ggtcgcgccc gatccgcatc atggccgcgg tgagcgcccg gccgacaccc cgccgtcgcg
     1201 ccgcctcgac cgtcccgacg ttgtagaccc ccatcacgcc atccagagcc actccggcag
     1261 cgcagcccac cggctcgccc tccagccggg ccacgagctg aaccagccct ggcacgtccc
     1321 gccagacccg cgtgaacacg tcgaggagct gcccggggag ctcgaacgcc tcgacgaaca
     1381 cgcggttggc cgccagccac tccccctcgg tggcgcacac cgtaaccccg acctcagcga
     1441 cctcaccgac ctcaccgacg gcgccgtgct gcgacgtgag gtccacggcg gcgaggtcgg
     1501 catgcatccc gggggtcagt ccccctgtga ccaggcccct cgcggacagc aggtcctcga
     1561 tcgccggcga gcgagtgcgc gggccggccc accattggaa cggctggccg ttggcagaca
     1621 gaaccctgag gacttcctcg gcccggcgca cttcggatcc gggcgcgaag ctcggcgcca
     1681 ccgcgccact gaacagaggg aacgggatat cggagacgta ccccagcacg tcctcatcag
     1741 gcagccgccg gacgatcgag ctggtcgagc tggttagcgt gcgcatcacg gacacgtagt
     1801 ggtcctcgac catgcgcacc cgcaggtccg tcgtcgtgtc catcccttga tggtgggggc
     1861 gccgtcggcg ctcgtctgcc ggtttcggcg aatccgaggt atgccgggca ttccccgacc
     1921 cagtgcggcc gaggtggggg attggcgaga atgcgtcgat cccggtggct agactcgtgc
     1981 gttccccgca gggacgagca gagagaccac agtgaccggt caggaccatc cgaccacgaa
     2041 ggcgaccagc gccgaagtgg cgcgcgagat cgccatcgag cagacccatg tcgacctcgt
     2101 gtacgccgaa ctcaccaagg cgcaggcccg agccggcctg gtggaggctg acggcctcgc
     2161 ccggggtcgg actgaccgca cgggtgacgt ccgcgacgag gagctcacgg gcctgttcga
     2221 gcgcgacgct ctggtcttca acgcagcccg tcgtcgctcg acgctggaca cccagtacga
     2281 agggctcgtg ttcgggcgcc tcgacctcga ccacgccatg ccgcgcgacg cggcacccac
     2341 cgagtccgga cccaccgact ccggacccat cgactccggg gactccgggg actccgggga
     2401 ctcttcggat tcccgtgacc ctggcgggtc cgaggcccgc acccgcaccg ccgccgatcg
     2461 cgagatccgc tacatcggcc gcctgggggt gcgcgacgac gagtacga
//
LOCUS       DASYFY010000292         2092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1019509, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000292 DASYFY010000000
VERSION     DASYFY010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019509"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VGN19_06010"
     CDS             complement(<1..206)
                     /locus_tag="VGN19_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195473.1"
                     /translation="MRRPVAKKAGWSDLDVRAVDTVRLLAADAVQKVGNGHPGTAMSL
                     APAAYLLFQNVMNHDPNDAAWLGR"
     gene            452..1375
                     /locus_tag="VGN19_06015"
     CDS             452..1375
                     /locus_tag="VGN19_06015"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEV7195474.1"
                     /translation="MSASPARRRGGKAAAYLALTKPRIIELLLVTTVPVMFLAHRGIP
                     SLWLIVATLVGGSLSAGAANTFNCVYDRDIDAEMHRTSNRPMVTGEISPRAGLVFGLA
                     LTVASTVWLALFVNLLSAALSLGAIVMYAVGYTMILKRRTAQNIVWGGAAGCMPVLIG
                     WSAVADSLSWSALVLFLVIFFWTPPHYWPLSMKFKDDYAAAHVPMLPVVEKFVVVARQ
                     IVAYSWAMVAVSLALVWVNPMGWVYLVTALATGGLFLAEAHRLLRAASAGSAEQGLKP
                     MRLFHFSITYVGILFLGVAIDPLVYLPVFHR"
     gene            complement(1378..>2092)
                     /locus_tag="VGN19_06020"
     CDS             complement(1378..>2092)
                     /locus_tag="VGN19_06020"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195475.1"
                     /translation="FLVSAVCLWRLRLPTRDADDVDEVTVVAPLRLRIREGVAYVRHD
                     SLLRFFTLVGGISNFGLTGYSTLLVLFLVREVHLSAGAVGLVLAVGSVGGVVGATIAT
                     RVSRRLGSARALLVLQLVAGPPALLVPLGAPGVRLVTTVVGLLLVGIGVVAGNIVRGA
                     WRNSYVPEAMVARQVTTAQVVNLGTMPLAALVAGALGTQLGLRPTIAVMAVIHVLACG
                     SMFRSPLRGLRELPGPAAG"
BASE COUNT          336 a          699 c          708 g          349 t
ORIGIN      
        1 tcacgaccga gccaggcggc gtcgttcggg tcgtggttca tcacgttctg gaacaacagg
       61 tatgccgctg gtgccaggct catcgcggtg cctgggtgac cgttgccgac cttctggacg
      121 gcgtcggctg ccagcagtcg gaccgtgtcc acggcgcgca cgtcgaggtc gctccaaccg
      181 gccttcttgg ccaccggtcg gcgcaacgag ctgctgcgct tgcgggcggt ctgagacggt
      241 gcggatcggg tggtggtggg cactgatggt tctcctcaca aagagctgca gagtcgacgc
      301 acgacaacga tccgagacta gtcccgcggg tgatctgcgt cgcatccagt cctgtccctg
      361 gaccgtccga ggacgggttt agactgatgc ggcaagttcg cctcagcagc caccaaagga
      421 cgtcgtgacc gcactcgatc cgtcagcccg gatctcagcg tcccccgcac gtcgtcgcgg
      481 cggcaaggcc gcggcatacc tggccctcac caagccccgc atcatcgagc tgctcctggt
      541 caccacggtt ccggtgatgt tcctggcgca ccggggcatt ccgtcgttgt ggctcatcgt
      601 cgcgacactg gtcggcggct cgctcagtgc gggcgcggcc aacacgttca actgtgtcta
      661 cgaccgcgac atcgacgcgg agatgcaccg gacgagcaac cggcccatgg tgaccggcga
      721 gatcagcccg cgcgcggggc tcgtgttcgg actcgccctg accgtcgcgt cgaccgtgtg
      781 gctggcgctg ttcgtcaacc tgttgtcagc ggctctctcg ctcggagcga tcgtcatgta
      841 tgccgtgggc tacaccatga tcctcaagcg gcgcacggcg cagaacatcg tgtggggtgg
      901 ggccgccggg tgtatgccgg tgttgatcgg ctggtccgcc gtggccgact cactgtcgtg
      961 gtcggccctg gttctcttcc tcgtgatctt cttctggacc ccgccgcact actggccgtt
     1021 gtccatgaag ttcaaggacg actacgccgc agcccacgtc ccgatgcttc ccgtcgtcga
     1081 gaagttcgtg gtggtggcgc ggcagatcgt cgcgtactcg tgggcgatgg ttgctgtgtc
     1141 gttggcgctc gtgtgggtca acccgatggg ctgggtctac ctggtcacgg cgctggccac
     1201 cgggggcctg ttcctcgccg aagcacaccg cctactgcgg gcggccagtg ccgggtcagc
     1261 ggagcagggg ctgaagccga tgcgcctgtt ccacttctcg atcacctacg tcgggatcct
     1321 tttcctgggc gtggcgatcg acccgctggt gtacctgccg gtcttccacc gctgacgtca
     1381 tcccgcagca gggccgggga gctcgcgcag tccacgcagg ggactccgga acatcgagcc
     1441 gcaggcgagc acgtggatga ccgccatcac cgcgatcgtc gggcgaagac ccagctgggt
     1501 accgagggca ccggcgacga gggcggctag aggcatggtc cccaggttga cgacctgagc
     1561 cgtggtgacc tgccgggcga ccatggcttc ggggacatag ctgttgcgcc aggcccccct
     1621 gacgatgttg cccgcgacca ctccgatacc aaccagcagc agccctacaa ccgtcgtgac
     1681 gagccggacc ccaggggcac cgagcggtac caacaatgca ggtggtcccg ccacgagctg
     1741 caggacgagc agcgcgcgcg ccgagcccag ccgtcgcgac acccgggtcg cgatggtggc
     1801 gccgaccacg ccgccaaccg acccgacggc gaggaccagg ccgacggccc ctgccgacag
     1861 gtggacctcg cgaacgagga agaggacaag gagggtgcta tagcccgtga ggccgaagtt
     1921 gctgatcccg ccgacgaggg tgaagaagcg caacagggag tcgtgacgga cgtaggcgac
     1981 gccctcgcgg atccgcagtc gcaacggggc caccaccgtg acctcgtcga cgtcgtccgc
     2041 gtctcgcgtc ggcaacctga gccgccacag gcagacggca gagacaagga ag
//
LOCUS       DASYFY010000293         5390 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1702605, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000293 DASYFY010000000
VERSION     DASYFY010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5390
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1702605"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /locus_tag="VGN19_06025"
     CDS             complement(<1..921)
                     /locus_tag="VGN19_06025"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000009 - alpha-1,6-mannosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0004376 - glycolipid mannosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006506 - GPI anchor biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyltransferase family protein"
                     /protein_id="HEV7195476.1"
                     /translation="MSRSGGSSRGRIRPRLSVRQVGASLRGLGLHSQTLPAMAQPVGA
                     WVGSRVALVGFVLAASWLVGVDRARLASDPGTWILQRFTYWDSLHFLRIAEQGYFPPH
                     LACCDQAFFPGYPLLVALLAPLTGGTMVAALLVSLLAGVGSAVLLWRLGADIGGRRMA
                     TCAVLFLAVAPYGIFLTAAYSESTFLVFVLAAWWAGTRRHWWWAGIFAGAAAGVRVNG
                     LFLALALGVMYAAQLRSQGRWRPRWDAAALLVPFAVTGTYFAYLFASTGSLDAWHRAE
                     AAGWRRQTVWPWDAFAAAWHAIVSTSKPDLV"
     gene            1008..2543
                     /locus_tag="VGN19_06030"
     CDS             1008..2543
                     /locus_tag="VGN19_06030"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH and CHAD domain-containing protein"
                     /protein_id="HEV7195477.1"
                     /translation="MATTRQREVERTYAAPASGVVPTLTGLPGVTATRQESASDLVAT
                     YLDTVNLDLARNKTSLRRRTGGGDAGWHLKLGIDKEKRSELHHPLGELGEGVPPALLD
                     QVRAIVRDHPLVPVATVRTHRLERDLCDAAGVTLAKVCDDQVQAERLLGPALVQEWRE
                     WEVELECGDRELFDAVERRLVTAGGVRAVGASKLLRALGGLAPSRVAPPPSRRQLSRA
                     SAATYLQAQLGDQVAALHRQDARVRAGRSSGVHKLRIATRRLRSSLTTYRPLLEASAI
                     DPVRDDLRWLGQSLGAARDAQVLLEHLRGQVEQEPVELVMGPVVQRLERELGAEGAAG
                     RERALETLDTERYYRLLDTLDDIVAAPPVSAGAAARATRVVPRLLQRDARRLSDAVRP
                     LRDADRNAPHDALLHEIRKKAKRLRYGAEGAVPLFGARAKRLAAAVEGVQETLGEHQD
                     SVVAREKLRGYAARAFLSGENGFTFGRLHAIEQWRADEAERRFALLWPDVPRKRVRKY
                     LAG"
     gene            2727..>5390
                     /locus_tag="VGN19_06035"
     CDS             2727..>5390
                     /locus_tag="VGN19_06035"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195478.1"
                     /translation="MSRLQSAAGHVRRDWSFDQWPLRRKLAAAVVLPMVLAFVFGGLR
                     VQSDFASAQQLTAAADTVNVIRPVIDYNLAVQRLAAADSVGGGTLTLATARYKSAAAD
                     LSAAMKRSNVPDAVRAKATSALLLGEAVRSAKAQTGFSDVVIEKSGNIATVMSEVVSD
                     LGLTDDPASAQLVLALQDTITAQRALTGQQINLANTDDAAAELRAIGEVGAETSALTR
                     LQTELPTFSSPIRQVLNDNTRRAGVLEGTPTKDDLAGLAPVFQSSNATYTTLLDGQLS
                     SLASTLVDRANANRSGAVFAALLVTAALLAAVLIVIASIRLLLSTIRVVREGALDVAQ
                     NRLPAAVAKIRDGEEAAPFEPIPVTTTEEMGQLARAVDDLHTQALTLAGEQARLRVQV
                     GHMFETLSRRSTSLIDQQLTLIERLESDEEDPKRLQSLFRLDHLAARMRRNSDSLLVL
                     AGTSTRRAVTGSVSVADAVRAAVSEVENYERIDIGDTANDHVLGAVGSDLIHLLAEIV
                     DNALAYSPPTTRVAIRGARTPDGGLLVEVADRGLGMPPKDLAALNDQLAHGGDITADT
                     ARRMGLYVVGSLAKRHGIAVRLRRNGDELQGVTVSIHLPAGLLADSATIRPDRGRSAR
                     AASTTSPALDGDGKPTVTPSVVGGSTKSGLPTRVRGASGATPIPDAAKKVVPPRIPGA
                     DSLPSVNASVAPAKPVIETSSPSGDVAPSSDGPFAPNGKAAETLNGHTAAPLNGQAAE
                     PLNGVFAPEPKDAAPEPKDGSSEADGAAATTGDPTVAPRSASGLPVRKPRASRITEYR
                     EFGSAPAEKGDAASIGADGADGAVSDSLADDADVQQPVTNAKATRLPSWLPGRAKAAA
                     EAARLEAEANEPRQMPSNLSAWLDHRAKLVEA"
BASE COUNT          866 a         1961 c         1813 g          750 t
ORIGIN      
        1 caccaggtcg ggcttggacg tcgacacgat ggcgtgccag gccgcggcga acgcatccca
       61 cggccacacg gtctgtcgtc gccaccccgc agcctccgct cgatgccagg catccaacga
      121 cccggtcgag gcgaacaggt aggcgaagta ggtacccgtc accgcaaaag gcacgagcag
      181 cgccgccgcg tcccaccgcg gtcgccagcg cccctgcgac ctcagctgcg cggcatacat
      241 cacgcccagg gccagggcga gaaacagccc gttgacccgc actccggccg cggcaccggc
      301 gaagattcca gcccaccacc agtggcgacg ggtgcccgcc caccaggcgg cgagcacgaa
      361 gaccaggaac gttgactcgc tgtaggccgc ggtgaggaag atcccgtacg gcgcgacggc
      421 gaggaagagg accgcgcacg tggccatcct ccggccaccg atgtcggccc ccagccgcca
      481 caacagaacg gccgacccga ccccggcaag cagcgagacg aggagggcgg cgaccatcgt
      541 gccgccggtc agcggtgcca gcagtgcgac gagcaacgga tatccgggga agaacgcctg
      601 gtcgcagcac gccagatgcg gcgggaagta gccctgctcg gcgatccgca ggaaatgcag
      661 cgagtcccag tacgtaaagc gttgcaggat ccacgtcccg ggatcgctcg cgaggcgagc
      721 cctgtcgacg cccacgagcc acgacgccgc gaggacgaaa cccaccaggg ccacccggct
      781 gcccacccag gcccccaccg gctgggccat cgcgggaagg gtctggctgt gcagacctag
      841 cccacgaagc gaggccccta cctgacgcac ggagagccgt gggcggatcc ggcccctgga
      901 ggacccgcct gaccgtgaca tgcctcgaac ctagcggagc cggcgcagag caggcgccct
      961 gcccgaaccc gcagtgcaga cgtgggatcg ggaggatcat gggggaggtg gcgacgacgc
     1021 gacagcgtga ggtcgagcgc acctatgcgg ccccggcctc cggggtcgtg cccacgctga
     1081 ccgggttgcc aggagtaacc gccacccgac aggagtcggc ctccgacctg gtcgccacct
     1141 atctggacac cgtgaacctc gatctggctc ggaataagac cagcctgcgc cggcgcacgg
     1201 gaggaggtga tgcgggctgg catctcaagc tggggatcga caaggagaaa cgcagcgagc
     1261 tgcatcaccc cctcggcgag ctgggggagg gagtgccacc tgctcttctg gaccaggtgc
     1321 gggcgattgt gcgtgaccac ccattggtac cggtggccac cgtgcgcacc cacagactcg
     1381 agcgcgacct gtgcgacgca gcgggcgtga cgctggccaa ggtctgcgac gaccaggttc
     1441 aggccgagcg actgctcggg ccggcactcg tccaggagtg gcgtgaatgg gaggtcgagc
     1501 tcgaatgcgg tgaccgcgag ctgttcgacg cggtcgaacg tcggctggtc acggcggggg
     1561 gcgtccgggc cgtcggtgcc tccaagctgc tgcgagccct gggaggtctg gcgccatcgc
     1621 gcgtcgcccc cccgccctct cgacggcagc tgtcacgggc aagtgcggcg acctatctcc
     1681 aggcccagct cggcgaccag gtcgcggccc tgcatcggca ggacgcccgg gtccgagccg
     1741 ggcgctccag cggggtccac aagctgcgta tcgccacccg tcgactccgg tcgtcgctga
     1801 ccacctaccg gccgctgctg gaggcctcgg cgatcgaccc ggtccgggac gaccttcgct
     1861 ggttgggtca gtccctcggt gctgcccgtg atgcccaggt tctgctcgag cacctgcgtg
     1921 gacaggtcga gcaagagccc gtcgagctgg tgatgggtcc ggtggtccaa cggttggagc
     1981 gtgagctggg cgccgagggt gcggcaggac gggagcgtgc gctcgagact ctcgacaccg
     2041 agcgctacta ccgcctgctg gacacccttg acgacatcgt tgcggcgcct ccggtcagcg
     2101 ccggagcggc ggcccgtgcc acgcgggtgg tccctcgcct tcttcagcgg gacgccaggc
     2161 gtctgagtga cgcggtgcgc ccgctgcgcg acgccgaccg caatgcaccg cacgatgccc
     2221 tgctgcacga gattcggaag aaggccaagc gcctgcggta cggcgcggag ggcgctgtcc
     2281 ccctgttcgg tgcgcgcgcc aagcgtttgg cggcggcggt cgagggcgtg caggagacgc
     2341 tgggggagca ccaggactca gtggtggcca gggaaaagct gcgcgggtat gccgctcgtg
     2401 cgttcctcag cggcgagaac ggcttcacct tcggtcggct gcacgccatc gaacagtggc
     2461 gcgccgacga ggccgaacgc cgcttcgccc tcttgtggcc cgacgtgccg cgcaagcgcg
     2521 ttcgcaagta cctggccggc tgaagcctcc ccctcggcgc ggacgcctag tccgcgtgga
     2581 cgcctagtcc gcgtggacgc ctagtccgtt tggacagaag tgcgcggacc aaacgtctct
     2641 actggccccc tatctctatg cccggccccc gggcacccgc atatgttgcg gtttcgccaa
     2701 gttttcatga caaggaaggt gactctgtgt ccagactgca gtcggcggct ggccatgtcc
     2761 gccgtgactg gtcattcgac cagtggccct tgcgccggaa acttgccgcc gccgttgtgc
     2821 ttccgatggt gctggccttc gttttcggtg gactgcgggt gcagagtgac ttcgcctccg
     2881 cccagcagct caccgcggca gccgacacgg tcaacgtcat ccgtccggtc atcgactaca
     2941 acctcgccgt ccagcggctg gcagccgccg acagcgtcgg cggcggcacg ctgacgctcg
     3001 cgacggcgcg gtacaagtct gcagctgccg atctgagcgc tgcgatgaaa cgctcgaacg
     3061 tcccggacgc ggtgcgagcc aaggcgacct ccgcgctctt gctcggtgag gcggtccgct
     3121 ccgccaaggc acagaccggc ttctctgacg tggtcatcga gaagtcgggc aacatcgcca
     3181 ccgtcatgtc cgaggtcgtc tcggacctcg ggcttaccga cgacccggcg tccgcgcagc
     3241 tcgtccttgc cctgcaggac accatcacgg cgcagcgtgc cctgaccggc cagcagatca
     3301 acctggccaa cactgacgac gcggccgcag agctgcgcgc catcggcgag gtgggcgcgg
     3361 aaacctcggc cctcacccgt ctacagaccg agctgccgac cttcagctcg ccgatccgcc
     3421 aggtcctcaa cgacaacacc cgtcgcgccg gggtgctcga gggcactccg acgaaggacg
     3481 acctcgccgg gctcgcgccg gtcttccaga gcagcaacgc cacctacacg accctgttgg
     3541 acgggcagct ctcctccttg gcctccaccc tggttgaccg ggcgaacgcc aaccgctccg
     3601 gtgccgtctt cgcagccctg ctggtgactg ctgctctgct cgccgcggtc ctcatcgtga
     3661 tcgcttccat tcgtctgttg ttgtccacga tccgcgtcgt ccgcgagggt gcgctcgacg
     3721 tcgcccagaa ccgcctgccc gccgccgttg ccaagatccg cgatggggag gaagcggccc
     3781 cgttcgagcc gatcccggtc acgaccaccg aggagatggg ccagctcgcc cgagcggtcg
     3841 acgacctgca cacccaggcc ctgaccttgg ccggcgagca ggcccgactg cgcgtgcagg
     3901 tcgggcacat gttcgagacg ctctctcgac gcagtacctc gctcatcgac cagcagctga
     3961 ccttgatcga gcgcctcgag agcgatgagg aggatcccaa gcggctccaa agcctcttcc
     4021 gtctggacca cctcgccgcc cgcatgcgcc gaaacagcga ctcgctgctg gttctcgccg
     4081 gcacctcgac acggcgcgca gtcaccggtt cggtgtcggt cgccgacgcc gtccgtgcgg
     4141 cagtgtccga ggtcgagaac tacgagcgca tcgacatcgg cgacaccgcg aacgaccacg
     4201 tccttggcgc cgtgggctcc gacctcatcc acctcctggc ggagatcgtc gacaacgccc
     4261 tggcctactc cccgcccacc acacgcgtcg cgatccgcgg cgcccggacg ccggacgggg
     4321 gcctgctcgt cgaggtcgcc gaccgcgggc tgggtatgcc gccgaaggac cttgccgcgc
     4381 tcaacgacca gctggcgcac ggcggtgaca tcaccgccga caccgcgcgc cggatgggtc
     4441 tgtacgtcgt cgggagtctg gccaagcgcc acggcatcgc ggtccgcctg cggcgcaacg
     4501 gggacgagct tcagggcgtc accgtctcca tccacctccc cgcgggtctg ctcgctgaca
     4561 gcgccaccat ccgacccgac cgtggcaggt ctgctcgggc ggcctcgacc acctcgccgg
     4621 ccctcgacgg ggacggaaag cccactgtga cgccctcagt ggtgggtggg tcgaccaaga
     4681 gcgggctccc gacgagggtc cgtggcgcca gcggtgccac gcccatcccc gacgccgcca
     4741 agaaggtcgt accacctcga atcccgggtg cggacagcct cccgtccgtg aacgcgtctg
     4801 tcgccccggc caagcccgtc atcgagacgt cttccccgtc gggagacgtc gccccttcca
     4861 gcgacggccc gttcgcgccg aatggcaagg ccgcggagac cctgaacggc cacacggccg
     4921 cgccgctgaa cggccaggca gccgagcctc tgaacggcgt ctttgcgccg gagcccaagg
     4981 acgccgcgcc ggagcccaag gacggctcct cggaggcgga cggcgccgcg gccaccaccg
     5041 gtgacccgac cgtcgcacca cggtccgcct cggggctgcc cgtccgaaag ccgcgcgcca
     5101 gccgcatcac ggagtatcgc gagttcggca gcgccccggc ggagaagggc gacgctgcct
     5161 cgatcggggc cgatggcgcc gatggtgcgg tgtccgactc gctcgcggac gacgctgacg
     5221 ttcagcagcc cgtgacgaat gccaaggcca cccggctgcc gagctggctg ccggggcggg
     5281 ccaaggccgc cgcggaagct gctcgcctcg aggctgaggc caatgagcct cggcagatgc
     5341 cctcgaacct ttccgcctgg ctcgaccacc gggccaagct ggtcgaggcc
//
LOCUS       DASYFY010000294         1609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_494151, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000294 DASYFY010000000
VERSION     DASYFY010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494151"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VGN19_06040"
     CDS             <1..258
                     /locus_tag="VGN19_06040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195479.1"
                     /translation="AMVRPGDSIDLVGPQGMVAQAVRVLRVDADEGSAPGGVLGGGAL
                     SVQDPRGGLVVAMDPSSVEALARVPADALGRPALTLTVRAS"
     gene            361..720
                     /locus_tag="VGN19_06045"
     CDS             361..720
                     /locus_tag="VGN19_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MscL family protein"
                     /protein_id="HEV7195480.1"
                     /translation="MKGFKDFVMRGNLVELAVAFIIAASFAVVVKTFTDLILGIIGKF
                     FGKPDFNSIRPGGLPLGTFLTALVSFLIVAAVVYFFVVKPYEVAKARYTRTEADAAPD
                     EDTVLLREIRDALTRRV"
     gene            complement(824..>1609)
                     /locus_tag="VGN19_06050"
     CDS             complement(824..>1609)
                     /locus_tag="VGN19_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HEV7195481.1"
                     /translation="RARRRMTVVSSLVAGDLDPTRLKARGAEMLRDFLAYAADGTFPG
                     AGAAATTNLSASPAPFSGSGQPDPLRAEFARRLRDSGLVVHESYGNAAHPIDLAVEDP
                     AHHGNVVVAVESDGPAYAAMRSSRDRDRLRGEQLTRLGWEHVRVWSTDLFRDPARDVS
                     RVHAAVQRAVAHRDEAGSEPPAEFGEPNESAQVAPEAMPGGAEADFAPATDEGAPKRR
                     ARRRKAKPEQTKDDTDQGWGEYRDESAHDRWLHEQRPPHWGTD"
BASE COUNT          212 a          576 c          560 g          261 t
ORIGIN      
        1 gcgatggtgc gacccgggga cagcatcgac ctcgtgggac cgcagggcat ggtcgcccaa
       61 gccgtgcggg tgctgcgggt cgacgccgac gagggctcag cgccgggagg agtgttgggt
      121 ggcggggcgt tgagcgtcca ggacccccgg ggaggtctcg tggtcgccat ggacccgtcg
      181 tccgtggaag ccctcgcccg cgtccctgcc gacgcactgg gccgccccgc tctcaccctc
      241 accgtgcgag cctcgtgagg tgacgcgacc agctggtggc aatgcgagcg cgccgactgg
      301 cctttccagt cgatagcgtg acccctgtcg cagccacctc acggaaaggg cgcaacgccc
      361 atgaagggtt tcaaggactt tgtcatgcgg ggcaatctcg tcgagcttgc cgtcgccttc
      421 atcattgccg cgtcgttcgc ggtcgtggtc aagacgttca ccgatctcat cctcggcatc
      481 atcggcaagt tcttcggcaa gcccgacttc aactccatca ggccgggcgg actgccgctg
      541 gggacgttcc tcacggccct cgtgtcgttc ctgatcgtgg ccgcggtcgt ctacttcttc
      601 gtggtcaagc cgtacgaggt ggccaaggcg cgctacacca ggactgaggc ggacgcggcc
      661 cctgacgagg acaccgtcct gctgcgcgag atccgcgacg ccctgacccg gcgcgtctga
      721 cccggcgcag gggttctgcg cgagaggtgg gcaatcggtg gcctcggcca cgggcgagac
      781 cgcagattgc ccaccttcgg cgccttacgc atgacaagca ggctcagtca gtgccccaat
      841 gcggcgggcg ctgctcgtgc agccacctgt cgtgggcgct ctcgtcgcgg tactcgcccc
      901 agccctggtc ggtgtcgtcc ttggtctgct cgggcttggc cttgcgacgc ctcgcccgtc
      961 gcttgggggc cccctcgtcg gtagccgggg cgaagtccgc ctccgcaccg ccgggcatcg
     1021 cctcaggcgc gacctgcgcc gactcgttcg gctcgccgaa ctcagccggc ggctcggaac
     1081 ccgcctcgtc gcgatgggcc accgcccgct gcacggccgc gtggactcgc gagacgtcgc
     1141 gcgcagggtc gcggaagagg tccgtgctcc agacccgcac gtgctcccag cccagacgcg
     1201 tcagctgctc gccgcgcagc cgatcccggt cacggctgct ccgcatggcc gcgtatgccg
     1261 gtccgtcgct ttcgacggcg acgaccacgt tgccgtggtg ggcggggtcc tcgacggcca
     1321 ggtcgatggg gtgggccgcg ttcccgtacg actcgtggac gacgagcccc gagtcccgta
     1381 ggcgccgcgc gaactccgcc cgcagggggt cgggctgccc tgacccgctg aagggagcgg
     1441 gcgatgcgct caggttcgtc gtcgccgcag caccagcccc ggggaaggtg ccgtccgcgg
     1501 catacgcgag gaagtcacgc agcatctccg ctcccctggc cttgaggcgt gtggggtcga
     1561 ggtcgcccgc cacgagcgag gacaccaccg tcatccgacg tcgtgcgcg
//
LOCUS       DASYFY010000295         4010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1493147, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000295 DASYFY010000000
VERSION     DASYFY010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4010
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1493147"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(412..1191)
                     /locus_tag="VGN19_06055"
     CDS             complement(412..1191)
                     /locus_tag="VGN19_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195482.1"
                     /translation="MSSSANRPRRPVAGERARARSATPPVTVPPTPGTRPPASPPAPP
                     AVPTRAAPATPITSPVESSITSPVESPVDSSTVGQRFAGLSRLAWLPRRKPAAAGGAT
                     RRQWFAAAAALVASLVVLGVLLGLTWRDPQDQPKADRVAASTARASIEQMLSYNYKTI
                     DAQAAQIETLLTGPFKAEFTAAMSKDIVPLAVKNQTVVQARVSDVGIMSSTPTTVRVL
                     AFVNQARIGASSTTPTVDQNRVIATMSKVGDRWLISKVEAF"
     gene            complement(1175..1783)
                     /locus_tag="VGN19_06060"
     CDS             complement(1175..1783)
                     /locus_tag="VGN19_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195483.1"
                     /translation="MSTITTHAGRAVKADDEMAGTALAGDPQQAPDGPRRGVVAALRV
                     TPTMVWMIAALALIASLALGATRGRDWYAARQTSQANAAALAAAKQLAVNFVTVDYTK
                     VDADTAMVKAGATGQFLTSYSSSVDDLKKVLVANKTQSSVSRIEVALVSGTQNSAITL
                     VGVVAPTKNASVPNGETKTYRMRLELRLVGQTWKVENLEFVG"
     gene            complement(1780..3051)
                     /locus_tag="VGN19_06065"
     CDS             complement(1780..3051)
                     /locus_tag="VGN19_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7195484.1"
                     /translation="MIRRSVQVQLFAFMLITLLTVSLLSAKYVGLYDQVVGGQIHVSA
                     DFAQSGGIFVGSEVTYRGVTVGRVEGLKLSKDGVVIQAKLQRDTAIPKDTLAVVEDRS
                     AVGEQYLDLQPRTAKGPMLASGDVIPRQDTKYPLRVDNLLLHLDQTVNSVDRNDLRTV
                     VNEFGLAFADGGTDLQRLLDSGDALTRSATEALPQTIKLIDDGRIVLNTQRDTSGQIK
                     TFASNFADLTQTLKTSDPDLRLILDRGAVASQELQALIRDNQGNLAALIANLITVGQV
                     TTSHVAGIQQLLVTYPDVVAGGYTVVPGDGSAHFGLAMAQNPPVCTQGYGGTVHRSPQ
                     DTSRGTTNTAARCTLPRGSAASVRGAQNAPGPSGSPNSTMPLAFGDQPVSPGLAASLG
                     MATPQVSVPLPPTGGESGDSSWLWIMKEAAG"
     gene            complement(3048..>4010)
                     /locus_tag="VGN19_06070"
     CDS             complement(3048..>4010)
                     /locus_tag="VGN19_06070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEV7195485.1"
                     /translation="NAIADIKQTSLLGEKYIELSPPPASAPQGQLRDGDNIPLARTGR
                     NPEVEEVLSAMSLLLNGGGVAQLKVIETELNNAMHGNEPQIRDVIKQLNTFVSGLNAQ
                     KADIIRALDNTDKLAAKLAAQKDDLARALDAMPGGLKVLADQRHQLVQMLQALSRLGA
                     VGTTVIQQSKTDTAANLAALRPILGQLTAAGDNLPKSMQLLLTYPFSDGTIGAMKGDF
                     TNMSADLHLNLTNPQALVGGLGSPPPPPTGLPTGLPTGLPTGLPTTIPTTLPPVPSLP
                     LPGHSSSSSTTNSCGLPVCPLGAPQPSSSQSSDGSWRSLYGSDA"
BASE COUNT          604 a         1267 c         1479 g          660 t
ORIGIN      
        1 ggacacagtc tgagtcgcat tgcgcgaggc agccaaggag gggtccttcc acgggccttt
       61 tttgtgaaac cgaagtcgcg tccaccaccg gcctgcggcc tcacctgaac cggccgtgat
      121 tcgtgccgca gggcacgaca aagggcgggg gtctcagggg gggtcgacga cagagggaag
      181 cgcaaaggaa gagcatacac ggtgagggca gcgtcgtcca accgtgtcca gtcggctgac
      241 gccggaactg tcgacgggag tcgcatccgg ggcctcaagc cctgggcggt ctcgacgcag
      301 acgagaatga cgcgccaagt cccattcgtc aaggcgaccg gcccaagtgg cccagatccg
      361 tcctgtcggg cgcatcggaa aatgcgggca aacctgcaga tcagcgccgg actagaaggc
      421 ttcgaccttg ctgatcagcc aacggtcgcc gaccttggac atggtggcga tgacccggtt
      481 ctggtcgacg gtcggggtgg tcgagctggc tccgatgcga gcctggttga cgaaggccag
      541 cacccgcacc gtggtcggag tcgagctcat gatgccgacg tcggagaccc tggcctggac
      601 cacagtctgg ttcttcacgg cgagcggcac gatgtccttg ctcatcgccg ccgtgaactc
      661 ggccttgaac ggacccgtca gcagcgtctc gatctgcgcc gcttgggcgt cgatggtctt
      721 gtagttgtag ctgagcatct gctcgatgga ggcccgggcg gtgctggcgg ccacgcggtc
      781 ggccttgggc tggtcctgcg ggtcacgcca cgtcagcccc aggagcactc cgagcaccac
      841 gaggctggcg accagggcag ccgcggcggc gaaccactgg cgccgggtcg ccccacctgc
      901 ggctgcaggc ttcctgcgcg gcagccacgc gaggcgcgag agccccgcga agcgttgacc
      961 aaccgtcgac gagtcgaccg gcgactcgac cggcgaggtg atcgacgact cgaccggcga
     1021 ggtgatcggc gtggccgggg ccgcgcgggt cggcacggcg ggcggcgccg gcggggacgc
     1081 cggcgggcgg gtgccagggg tgggcgggac ggtgacgggc ggcgtggcgg agcgagcgcg
     1141 ggctcgctcc cccgcgaccg ggcgacgggg gcggttagcc gacgaactca aggttttcca
     1201 ccttccaggt ctgcccgacc aggcgcagct cgaggcgcat ccggtaggtc ttggtctccc
     1261 cgttgggcac ggaggcgttc ttggtcgggg ccacgacgcc gaccagggtg atggccgagt
     1321 tctgggtgcc cgacaccagc gcaacctcga tccggctgac cgacgactgg gtcttgttgg
     1381 cgaccaggac cttcttgagg tcgtcgaccg aggaggagta gctcgtgagg aactgcccgg
     1441 tggccccggc cttgaccatg gcggtgtcgg catcgacctt ggtgtagtcg accgtcacga
     1501 agttcacggc gagctgcttg gcggccgcga gcgccgccgc gttggcctgc gaggtctgcc
     1561 gcgcggcata ccagtcgcga ccgcgggtgg cgcccaaggc gagcgaggcg atgagagcca
     1621 gcgcagcgat catccacacc atcgtgggcg tcactcgcaa agctgccacg acgccacgac
     1681 gtgggccgtc tggggcctgc tgtgggtcgc cagccaaggc cgtacctgcc atctcgtcgt
     1741 ccgccttcac cgcccgcccg gcgtgggtgg tgatcgtgct catccagcag cctccttcat
     1801 gatccacaac cacgaggagt cgccgctttc acccccggtg gggggaaggg gcaccgatac
     1861 ctgtggtgtt gccatgccca acgaggcggc caagcctggg gatacgggct ggtcgccgaa
     1921 tgccaggggc atggtgctgt tggggctgcc agagggtcca ggtgcattct gggcacctcg
     1981 aacactagcc gctgagccac ggggcagggt gcatcgagcc gcggtgttcg tcgtcccccg
     2041 gctggtgtcc tgcgggctgc ggtgcaccgt cccgccgtag ccctgggtgc acacgggggg
     2101 gttctgggcc atcgcgaggc cgaagtgcgc cgaaccgtcg cccggcacga ccgtgtagcc
     2161 gccggcgacc acgtcgggat aggtgaccag tagctgctgg atcccggcca cgtgcgaggt
     2221 ggtcacctgg ccgaccgtga tgaggttggc aatgagggcc gccaggttgc cctggttgtc
     2281 ccggatcagg gcctgcagct cctgggaggc cacggctcct cggtcgagga tgaggcgcag
     2341 gtcggggtcc gaggtcttga gcgtctgggt gaggtccgcg aagttgctcg cgaaggtctt
     2401 gatctgaccg gacgtgtcgc gctgcgtgtt gagcacgatg cggccgtcgt cgatcagctt
     2461 gatcgtctga ggcagcgcct cggtcgccga gcgggtcagc gcgtccccac tgtcgagcag
     2521 ccgctgcagg tcggtaccac catcggcaaa ggccagcccg aactcgttga cgacggtccg
     2581 caggtcgttg cggtccaccg agttgacggt ctggtcgaga tgcagcagca ggttgtcgac
     2641 gcgcagcggg tacttggtgt cctgtcgcgg gatcacgtcg ccgctggcga gcatcgggcc
     2701 cttggcggtc cgcggctgca ggtcgaggta ctgctcgccc accgccgaac ggtcctccac
     2761 gacggccagg gtgtccttgg ggatggcggt atcgcgttgc agcttggcct ggatgaccac
     2821 accgtccttg gacagcttca ggccttcgac ccgccccacg gtcaccccgc ggtaggtcac
     2881 ctcggaaccc acgaagatgc cgccggactg cgcaaagtcg gcgctcacgt ggatctggcc
     2941 acccacgacc tggtcgtaca gccccacgta cttcgccgag agcagggaca cggtgagcag
     3001 ggtgatcagc atgaaggcga agagctgaac ctgcaccgag cgccggatca tgcgtcactc
     3061 ccgtagagcg aacgccagga cccgtcggag ctctgcgacg aggacggctg tggggcaccc
     3121 agcgggcaga cgggcagccc gcacgagttc gtcgtggacg acgatgacga atggcccggg
     3181 aggggcagac tcggcaccgg cggcagcgtc gtggggatgg tggtcgggag gcctgttggc
     3241 aggccggtgg gcaggccggt cggcaggccg gtcggaggcg gaggcggcga gcccagtccc
     3301 cccacgagcg cctgggggtt cgtcaggttc aggtgtaggt ctgccgacat gttcgtgaag
     3361 tcacccttca tcgcgccgat cgtgccgtcg gagaaggggt aggtcagcag cagctgcatc
     3421 gacttgggca ggttgtcgcc agccgcggtc agctgcccga ggatcgggcg gagcgcggcc
     3481 aggttggccg ccgtgtccgt cttgctctgc tggatgacgg tggtgccgac ggctcccagc
     3541 cggctcagcg cctggagcat ctggaccagc tgatgacgtt ggtcggccag caccttcagg
     3601 ccgcccggca tagcgtcgag ggcccgggcg aggtcgtcct tctgggcggc gagcttggca
     3661 gccagcttgt ccgtgttgtc gagggcccgg atgatgtcgg ccttctgggc gttcaggcca
     3721 ctcacgaacg tgttgagctg cttgatgacg tctctgatct gcggctcgtt gccgtgcatg
     3781 gcgttgttga gctcggtctc gatgaccttc agctgggcga cgccaccacc gttgagcagc
     3841 agcgacatcg ccgacaggac ctcttcgacc tcggggttgc ggccggtccg ggcgaggggg
     3901 atgttgtcgc cgtcgcgcag ctggccctgc ggggcgctgg ccggcggcgg ggagagctcg
     3961 atgtacttct cgcccagcag cgaggtctgc ttgatgtcgg cgatggcgtt
//
LOCUS       DASYFY010000296         2430 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1702770, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000296 DASYFY010000000
VERSION     DASYFY010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1702770"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..1170)
                     /locus_tag="VGN19_06075"
     CDS             complement(196..1170)
                     /locus_tag="VGN19_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEV7195486.1"
                     /translation="MPAVTVDDITVLPRTPEVDRSTARERSIISVTRAPGGFEGEGFP
                     VRRAFAGVAPELLDPFIHMDQMGEVEYAAGEPKGTPWHPHRGFETVTYIIDGEFIHQD
                     SHGGGGTITNGDTQWMTAGSGLLHIETPPESLVISGGLFHGLQLWVNLPADEKWTAPR
                     YQDLRAKGVTLLSSPDGGALLRLIAGDVAGHTGPGTTHTPMTMIHATVSAGGQVSLPW
                     RPDFNALAYVLAGRGTVGAEQRPIATGQLAVFGPGNTITFGADASQDSNTPALEVVLL
                     GGRPIREPIAWMGPFVMNTESEVRQAFEDFQAGRLGHIPADGIQPFHA"
     gene            1561..2253
                     /locus_tag="VGN19_06080"
     CDS             1561..2253
                     /locus_tag="VGN19_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015884580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEV7195487.1"
                     /translation="MSTSASWACGPGQGSFDLGWEALQRMRRHARGLAAMSGRRHGWG
                     EGPGTMPPWLRGSWGWGGGPGGQGWGGGPSGGSGRSRAGRGDVRTAILALLAEGPRHG
                     YQLMQDIADRSHGAWKPSPGSVYPALSALQDEGLVDDEKVEGRRVFTLTESGQAHVRE
                     RADELGAVFDGFEPEDESELADVRLLIAGVAAAAVQSLTSGTPAQAERARTILAQTRR
                     DLYAVLADESEE"
BASE COUNT          367 a          820 c          882 g          361 t
ORIGIN      
        1 gctgcggatg tggaacgtat gggaccgcaa cgacctttcc gacgtgggcg agaagtcgcg
       61 ggacgacttg gcccgcttca tggccgagct cgacgcctcg gcgacccggt tcgaggagcg
      121 acgggaaacc cgccgcgccc gagacgctgc cgccgccggc tgacctgtgg cccgccggcg
      181 gcctcgccgg tcctgtcagg cgtggaacgg ctggatgccg tcggcaggga tgtgacccag
      241 gcgcccggcc tggaagtcct cgaacgcctg gcgcacctcg ctctcggtgt tcatgacgaa
      301 cggccccatc caggcgatcg gctcgcggat cgggcgcccg ccgagcagga cgacctccag
      361 ggccggggtg ttggagtcct gggaggcgtc ggcgccgaac gtgatcgtgt tgcccgggcc
      421 gaacacggcg agctgaccgg tggcgatcgg gcgctgctcg gcaccgacgg tgccccgccc
      481 ggccagcacg tacgcgagcg cgttgaagtc cggacgccac ggcaacgaga cctggccgcc
      541 ggcactcacc gtcgcgtgga tcatcgtcat cggggtatgg gtcgtgccgg gaccggtgtg
      601 ccccgcgacg tcacccgcga tcagccgcaa cagcgcgccg ccgtccggtg aggacagcag
      661 cgtgacgccc ttggcccgca ggtcctggta acgcggcgcg gtccacttct catcggctgg
      721 cagattcacc cacagctgca gtccgtggaa cagcccgccg ctgatgacca gcgactccgg
      781 cggggtctcg atgtgcagaa gcccggaacc cgctgtcatc cactgggtat cgccgttggt
      841 gatggtgccg ccgccgccgt gggagtcctg gtggatgaac tcgccgtcga tgatgtacgt
      901 caccgtctcg aaaccgcggt gggggtgcca cggtgtgccc ttcggctcac ccgccgcgta
      961 ctccacctcg cccatctggt ccatgtggat gaacggatcg agcagctccg gagccacacc
     1021 tgcgaacgcc cgtcggacgg ggaagccctc gccctcgaac cctccggggg cgcgcgtcac
     1081 agagatgatc gaacgctcac gagccgtcga cctgtcgacc tcaggggtgc ggggcaggac
     1141 agtgatgtcg tccacagtca cagcgggcat gtcatctcct cagagccgtc gggcactctg
     1201 cccaaccata caaccttcaa ctacctaccg gtgcggtctc attcccgcca tcctgcgccc
     1261 gggcctgcgc accgccgaca gcgcacaggt caccgccgtc gcagcacggc tgcaggtagt
     1321 ggcagttggg gcactggtcc ttgcctccct ttcgtaccag gtcggccatc tcgcaggagg
     1381 ggcactgccc cggaagctgg aacatggctc gagcgtacga ggcctcgagg tccgttgccg
     1441 cgaaccggat ccactggtcc ccaggtgttg cgcgtagcgt tgggccgata tatcgtccaa
     1501 gtgtcgtcga gagtatcggc ggttctgcca ccgagaacca gcgagtgaga ggacgagacg
     1561 atgtcgacca gcgcatcgtg ggcctgcggg cccggtcagg gatccttcga cctgggctgg
     1621 gaagcgttgc agcgcatgcg ccggcacgcc cggggcttgg cggccatgtc cgggcggcgc
     1681 cacgggtggg gagagggacc ggggacgatg ccgccctggc tgcgcggttc ttggggctgg
     1741 ggcggtgggc ctggtggcca gggctggggc ggcggaccgt ccggtgggtc ggggcgttcg
     1801 cgggccggtc gcggggacgt ccgtaccgcg atcctggccc tgctcgcgga gggcccgcgc
     1861 cacggctacc agctgatgca ggacatcgcc gaccgcagcc acggcgcgtg gaagccgagc
     1921 ccaggctcgg tgtacccggc gctgtccgcc ttgcaggacg agggtctcgt cgacgacgag
     1981 aaggtcgagg gccggcgcgt cttcacgctg accgagtccg ggcaggcgca cgtgcgggag
     2041 cgcgccgacg agctcggggc cgtcttcgac ggcttcgagc cggaggacga gtccgagctg
     2101 gcggacgtac ggttgctcat cgccggcgtc gcagcggctg cggtgcagtc gctcacgagc
     2161 gggacaccgg cgcaggccga gcgggccagg acgatcctgg cccagaccag gcgtgacctc
     2221 tacgccgtgc tggccgacga gagcgaggag tagatcatgg ccttttccca gccggtgccg
     2281 tcacgacgga tgcgcgcctc ggaccaggag cggcaggagg cgatcgtggc actcggtgac
     2341 caccacgccg aaggtcgcct ggacctgcca gagttcacgg cgcggatgga acgggcgcag
     2401 gaggcgacgt acctcgacga gctctatcct
//
LOCUS       DASYFY010000297         5312 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1440198, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000297 DASYFY010000000
VERSION     DASYFY010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5312
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1440198"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..1211)
                     /locus_tag="VGN19_06085"
     CDS             complement(60..1211)
                     /locus_tag="VGN19_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEV7195488.1"
                     /translation="MGVGYIILLVLVAFALIVLFRTVRIVPQQTALIIERLGRYSRTL
                     EGGIHFLIPFVDKVRANVDLREQVVSFPPQPVITSDNLVVNIDTVIYYSVVDAKSAVY
                     EIANFIQGIEQLTVTTLRNVIGSLDLEQTLTSRDQINAQLRGVLDEATGKWGIRVNRV
                     ELKAIDPPMSIQESMEKQMKAERERRAIILTAEGAKQSNILTAEGEKQSQILRAEGSA
                     QARILEAQGQARAIQQVFDAIHRGKPTQKLLAYQYLQVLPQIARGDSNKMWIIPSELT
                     DALRGIGNALGAPDASPSPDGGEEEWMDPGDLANVFEDTALEDPKQALAEARGMAGKA
                     SQEATEHAAPAQRVQPPVGPPADAVPPYEPPPMPNLPEPPIEGTPQPPV"
     gene            complement(1223..1690)
                     /locus_tag="VGN19_06090"
     CDS             complement(1223..1690)
                     /locus_tag="VGN19_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEV7195489.1"
                     /translation="MDLFAANPWLAWVGVALVLAAVEAATVSFVFLMLSGGALAAAVA
                     TALGASFPAQVLIAVVVAGALLGVARPVIKRKFMVADASHTIGARSLVGKHAHVLQTV
                     TENDGRVKLNGETWSARTLSGAVQCQPGQEDRVVSIEGATVIVTDDTSGRKSE"
     gene            complement(1718..2536)
                     /locus_tag="VGN19_06095"
     CDS             complement(1718..2536)
                     /locus_tag="VGN19_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195490.1"
                     /translation="MSDVLEFAGVSVVRGRTTLLDDITWEVEEGQRWVVLGPNGAGKT
                     TLLQLAAGRMHPTQGVAGVLSEVLGAVDVFELRPRIGLASAALAERIPMDEAVHNVVV
                     TASYGVVGRWRESYDDLDHARAAELLSALGADHLADRTYGTLSEGERKRVQIARALMT
                     DPELMLLDEPAAGLDLGGREDLVRRLGELAADVEAPALVLVTHHVEEIPPSFTDVLLL
                     RDGRVVAQGPLELTLTEENLSATFGMPLELERHGDRWAARARPNGGTSVPPPSS"
     gene            2569..3336
                     /locus_tag="VGN19_06100"
     CDS             2569..3336
                     /locus_tag="VGN19_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195491.1"
                     /translation="MAELPASVRLSLWTTYAWARGIPAQDVVARALPDIDHVAGDLDR
                     LMIWHELGEQALLVALPSPGDLSGMPGASPSAQASAAQVGECVFVPAVGGMLVPVMSS
                     YGSGPGGSLDLGTRVDWTAYDADPVPRHRVEALEPSQLERHLREAIASAVATLDDVGG
                     QPFAGHAARELADTALGGRWGLPDGLPGRSARVIALAGTVGQVVEVALDAGDGALTAT
                     ASGARHTTLLRLRRAADDALAAATNAACAVLAGWRPA"
     gene            complement(3337..4542)
                     /gene="glgA"
                     /locus_tag="VGN19_06105"
     CDS             complement(3337..4542)
                     /gene="glgA"
                     /locus_tag="VGN19_06105"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004373 - glycogen (starch) synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase"
                     /protein_id="HEV7195492.1"
                     /translation="MRVDVLTKEYPPNIYGGAGVHVAELVRALRERGDIDTRVRAFGA
                     PVSEEGTTGYAELAELSSANAAAQTMGVDLAMAGDCVGADLVHSHTWYANFGGHVASL
                     LGGMPHVVTAHSLEPMRPWKAEQLGGGYRLSSFIERTAYEAAAAVIAVSQGMRLDVLR
                     SYPSVDPNRVQVVHNGIDSQLWQRREDPDTVRRLGVDPDGKSVIFVGRITRQKGLPYL
                     LRAAAKLPPDVQLVLCAGAPDTPEIMAEVESLMSELRATREGVVWIPEMLPRAQVVAL
                     LSAATVFACPSIYEPLGIVNLEAMACELPVVATATGGIPEVVVHTETGWLVPIEQRQD
                     GSGIPLDPERFIDDLAGALTDAVSDLPRAERMGLAGRRRAVESFSWASIGDQTLSVYR
                     DVLGLQTDG"
     gene            4605..>5312
                     /locus_tag="VGN19_06110"
     CDS             4605..>5312
                     /locus_tag="VGN19_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEV7195493.1"
                     /translation="MAYRSGGPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGIYRLI
                     DFALSNIVNSGYLKVVVLTQYKSHSLDRHVTKTWRMSNMLGNYITPVPAQQRIDKNWY
                     LGSANAIFQSLNLLHDEQPDIVVVVGADHVYRMDFSQMVAQHMETGAGVTVAAIRQPI
                     SLADQFGVIEVDDHDRRKIGAFLEKPKNAKGLPDSPQEVLASMGNYVFNADVLIDAVT
                     RDDTRVGSKHDMGGDIVP"
BASE COUNT          814 a         1837 c         1804 g          857 t
ORIGIN      
        1 cacccttgaa cccaagcggt gagcgggcgg catacgtcgg gggtcttggt ggtctgctct
       61 cagaccggag gctgaggggt gccttcgatg ggaggctccg ggaggtttgg catcggcggc
      121 ggctcgtatg gcggcactgc gtcggcgggc ggacccaccg gcggctgcac ccgctgcgca
      181 ggggcagcgt gctcggtggc ctcttggctg gccttgccgg ccatgccgcg ggcctccgcg
      241 agggcctgct tcgggtcctc gagtgcggtg tcctcgaaga cgttagccag gtcgcccgga
      301 tccatccact cctcctcccc gccatcgggg ctgggcgacg cgtcgggcgc gcccaaggcg
      361 ttgccgatgc cgcgcagtgc gtcggtcagc tcgctcggga tgatccacat cttgttcgag
      421 tcgccgcggg caatctgcgg caggacctgg aggtactggt acgcgaggag cttctgggtc
      481 ggcttgcccc ggtggatggc gtcgaagacc tgctggatcg cgcgagcctg accctgggct
      541 tcgaggatgc gcgcctgcgc cgaaccctcg gcccgaagga tctggctctg cttctcgccc
      601 tcggccgtca ggatgttgga ctgcttcgcg ccctcggcgg tcaggatgat ggcgcggcgc
      661 tctcgctcgg ccttcatctg cttctccatg gactcctgga tcgacatcgg cgggtcgatc
      721 gccttgagct ccacccggtt cacgcggatc ccccacttgc ccgtggcctc gtccagaacg
      781 ccacgaagct gggcgttgat ctggtcgcga ctggtcaggg tctgctcgag gtcgagggag
      841 ccgatgacgt tacgcagcgt ggtgacggtg agctgttcga tgccctggat gaagttggcg
      901 atctcgtaca cggccgactt ggcgtccacg accgagtagt agatgacggt gtcgatgttg
      961 acgacgaggt tgtcgctggt gatcaccggc tgcggcggga acgagaccac ctgctcgcgc
     1021 aggtcgacgt tcgcgcggac cttgtccacg aacgggatca ggaagtggat gccgccttcc
     1081 agggtgcgcg agtagcgccc cagtcgttcg atgatcaggg cagtctgctg cggcacgatc
     1141 cgcaccgtgc ggaacagcac gatcagcgca aaggccacca ggacaagcag gatgatgtat
     1201 cccacaccaa tgccactcac ggtcactccg atttccgacc cgacgtgtcg tcagtgacga
     1261 tcacggtggc cccctcgatg gatacaactc ggtcttcctg tccgggctgg cattgcacgg
     1321 cgccactcag cgtgcgcgcc gaccaggtct caccgttcag cttcacccgg ccgtcattct
     1381 cggtcaccgt ctggagcaca tgggcatgct tgccgaccaa gctccgggca ccgatcgtgt
     1441 ggctggcatc ggccaccatg aacttgcgct tgatcaccgg acgcgcgacc ccgagcaacg
     1501 cgccggcgac gacgaccgcg atcaggacct gcgctgggaa cgacgctccc agggctgtgg
     1561 cgaccgctgc ggccagcgcc ccgcccgaga gcatgagaaa aacgaagctg acggtggccg
     1621 cctcgaccgc cgccaggacg agcgcaaccc ccacccaggc cagccacggg ttcgccgcga
     1681 acaggtccat ctccccaccc ttcgtgtgtc gctaactcta ggacgacggc gggggcacag
     1741 acgttccccc gttcggacga gcacgggcgg cccagcggtc gccgtgccgc tccagctcca
     1801 ggggcatgcc gaacgtcgcc gagaggttct cctcggtcag ggtcagctcg agcggtccct
     1861 gtgcgacgac gcgcccgtcg cgcaacagga gcacatcggt gaacgacggg gggatctcct
     1921 ccacgtggtg ggtcaccagc acgagtgccg gggcctcgac gtccgcggcc agctcgccca
     1981 ggcggcggac caggtcttcc cggcccccaa ggtccagacc ggccgcgggc tcgtcgagca
     2041 gcatgagctc agggtcggtc atcaaggctc tggcgatctg cacgcgcttg cgctcgcctt
     2101 cggacagggt gccgtaggtc cggtcggcca ggtggtcggc accgagcgcc gacaacagct
     2161 cggcagcgcg ggcgtggtcg aggtcgtcat agctctcgcg ccagcggccc acgacgccgt
     2221 aggacgcggt cacaacgacg ttgtgaacgg cctcgtccat ggggatgcgc tcggccaggg
     2281 ccgccgaggc gagcccgatt cgagggcgca gctcgaacac gtccaccgcg ccgagcacct
     2341 cactgagcac ccccgcgacg ccctgcgtcg ggtgcatgcg gccggcggcc agctggagca
     2401 gggtcgtctt gcccgcaccg ttgggcccga gcaccaccca gcgctgtccc tcttcgacct
     2461 cccacgtgat gtcgtcgagc agggtggtgc gtccacggac gacgctcacc cctgcgaact
     2521 caaggacgtc actcatggca ccggacccta tcggcttagc atgacgaggt ggctgagctc
     2581 cctgcgtccg tgcgcctttc gctctggacg acctacgcct gggcgcgcgg catccccgca
     2641 caggacgtcg tggcccgggc gctgcccgat atcgaccatg tcgccggcga cctcgaccgc
     2701 ctgatgatct ggcacgagct gggtgagcag gctctgctgg tcgcccttcc cagccccggc
     2761 gacctgtcag gtatgccggg tgcctcgccg agtgcccagg cctcggcggc acaggtgggc
     2821 gagtgcgtgt tcgttcctgc ggtcggcggc atgctggtcc cggtcatgtc gtcatacggc
     2881 tcgggtcctg gagggtcgct cgaccttggc acgcgcgtcg actggacggc ctacgacgcc
     2941 gacccggtcc cccgccaccg ggtcgaggcg ttggagccgt cgcagctgga gcggcacctg
     3001 cgcgaagcca tcgcctcggc cgttgccacc ctcgacgacg tcggcggcca gcctttcgcg
     3061 gggcatgcgg cacgcgagct ggcggacacc gccctgggtg ggcgttgggg gctgccggac
     3121 ggcctgccgg gacgcagtgc ccgcgtcatc gccctggccg gcaccgtagg acaggtcgtg
     3181 gaggtcgcgc tggacgcggg tgacggtgcg ctgaccgcaa cagcgtcggg tgcgcggcat
     3241 acgacgctgt tgcggttgcg ccgtgccgcg gacgacgcgc tggccgcggc aaccaacgcc
     3301 gcgtgcgcgg tgctcgcggg gtggcggccg gcctgatcag ccgtctgtct ggagccccag
     3361 cacgtcgcgg tacacggaca gcgtctggtc gccgatgctg gcccaggaga acgactccac
     3421 ggcccgccga cgaccggcaa ggcccatccg ttcagcccgc ggaaggtcgc tcaccgcgtc
     3481 cgtgagcgcc ccagccaggt cgtcgatgaa ccgttccggg tccagcggta tgccgctgcc
     3541 gtcctggcgc tgctcgatgg gcacgagcca gccggtctca gtgtgcacga cgacctcggg
     3601 gatcccgccg gtggccgtgg cgaccacggg aagctcgcaa gccatcgcct cgaggttcac
     3661 gatcccgagc ggctcgtaga tcgacgggca ggcgaaaacc gttgcggcgg aaagcagggc
     3721 gacgacttgc gccctgggca gcatctccgg gatccagacc acgccctcgc gagtcgccct
     3781 gagctcgctc atgagcgact cgacctcggc catgatctcg ggggtgtccg gggcgcccgc
     3841 acagagcacg agctggacgt cgggcgggag cttcgccgcg gcccgcagca ggtagggcag
     3901 gcccttctgg cgcgtgatgc gtccgacgaa gatcaccgac ttgccatcgg ggtcgacgcc
     3961 gagccggcgg acggtgtccg gatcttcgcg ccgttgccac agctgtgagt cgatgccgtt
     4021 gtgcacgacc tggacccggt tggggtcgac cgacggatag ctgcgcagga cgtcaagacg
     4081 catcccctgg ctgacggcga tgaccgccgc tgccgcctcg taggccgtgc gttcgatgaa
     4141 cgacgacagc cggtaaccac caccgagctg ttcggccttc cacggtcgca tgggttcgag
     4201 gctgtgcgcc gtcacgacgt gcggcatccc accgagcagg gacgcgacgt gacctccgaa
     4261 gttggcgtac cacgtgtgcg agtggaccag gtccgcaccg acgcagtccc ccgccatggc
     4321 caggtcgaca cccatggttt gtgcggcggc gttcgcgctg ctcagctccg ccagctcggc
     4381 atacccggtc gtgccctcct cggacacggg ggcaccgaac gcccgcaccc gggtgtcgat
     4441 gtcgccacgc tctcggagcg cgcgcaccag ctccgcgacg tgcactcccg cacccccgta
     4501 gatgttgggc ggatactcct tggtcagcac atcgactctc acctgcgtga gattagtccc
     4561 gccatggggt cgccgcgagg gcatgcattc cctagggtcg gctcatggcg taccgatcgg
     4621 gtggacccaa agtgctggcc atcgtccttg cggggggaga aggcaagcgg ctgatgccgc
     4681 tgactgccga ccgggccaag cccgcggtgc ccttcggggg catctatcga ctcatcgact
     4741 tcgcgttgag caacatcgtc aactcgggct atctcaaggt cgtcgtcctg acgcagtaca
     4801 agtcgcacag cctggaccgg cacgtcacca agacctggcg catgtccaac atgctcggca
     4861 actacatcac cccggtgccc gctcagcagc gcatcgacaa gaactggtac ctcggttcgg
     4921 ccaacgcgat cttccagagt ctcaacctgc tccacgacga acagccggac atcgtcgtcg
     4981 tcgtgggcgc cgaccacgtc taccggatgg acttctccca gatggtcgcc cagcacatgg
     5041 agacgggagc cggcgtcacc gtcgccgcga tccgtcagcc catctcgctg gccgaccagt
     5101 tcggggtcat cgaggtcgac gaccacgacc ggcgcaagat cggtgcattc ctcgagaagc
     5161 ccaagaatgc caaggggctg ccggactcgc cgcaggaggt gctcgcgtcg atggggaact
     5221 atgtcttcaa cgcggacgtc ctcatcgatg ccgtgacccg tgacgacacg cgcgtgggga
     5281 gcaagcacga catgggcggc gatatcgtgc cc
//
LOCUS       DASYFY010000298         3962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1808220, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000298 DASYFY010000000
VERSION     DASYFY010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1808220"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VGN19_06115"
     CDS             complement(<1..1011)
                     /locus_tag="VGN19_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7195494.1"
                     /translation="MPSPNPVTPLSLFDTDSLLDGEERDMRDTVRRFVETRIKPHVGD
                     WYEAGALPARELSRELGALGVLGMHLEGYGCAGTSATAYGLACMELEAGDSGVRSLVS
                     VQGSLAMYAIWKHGSEDQKQEWLPRMATGEAIGCFGLTEADFGSNPAGMRTRARRDGD
                     DWVLNGTKMWITNGSVADVAVVWAQTDDRIRGFVVPTDTPRFSAPEIKRKMSLRASVT
                     SELVLDEVRLPAGAMLPGAAGLSGPLSCLTEARFGIVFGSLGAARDCLETTIAYARER
                     QIFDRPLAGFQATQLKLADMTLELGKGMLLALHLGRLKDSAGLEAAQVSLGKLNNVRE
                     SLA"
     gene            complement(1059..1931)
                     /locus_tag="VGN19_06120"
     CDS             complement(1059..1931)
                     /locus_tag="VGN19_06120"
                     /inference="COORDINATES: protein motif:HMM:NF038012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEV7195495.1"
                     /translation="MSLAVAVPCAVLSAVAYGGSTAVQQRAAHRGSGQADARGLLRLL
                     RDPRWLASVGGDTVGLVLQVVALATGPVVLIQPLLVLAVPVSLPVGWALGGPRPTWRD
                     YAACGGILAALALFFAVLGDPGGATPLSARPTLVAVGVILAVGGATLAALRGRSAPVR
                     AAVYGGVAGAWFGLVGVLLDAVATAWQRSGWPGLQSADGWVPLVSLVVVGALALTLTQ
                     VSFQVGALGASFPANESAAPVVAVFLGAALLHERVPVSPLTLAAYAGCLAVVVASTIW
                     LAKALSATKPAPRH"
     gene            2040..3098
                     /locus_tag="VGN19_06125"
     CDS             2040..3098
                     /locus_tag="VGN19_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195496.1"
                     /translation="MKLRSSFVLAATAAVTLVAAAVSAPAATADSGGAPISAAKSILW
                     STAGAPSTAATPSPTSLANNLIFHGGAVEHSPKVFVTFWGTEWKNGFRTGPNNAYSNA
                     TAMNYVNTFFGHLGGSRWNGTQTQFCDNIAPGSTSCAGSPYAQFITNPAQVLSGAWVD
                     GTPAPATIATTGLAENLTTDPIATEAVRASQHFGYVPDATYFVFTPPGHAATAYGTVY
                     CAYHSEVTNIGGHGLRYAFMPFTPEQGAGCGGNSVNPKNDAFGHGYLDSYSLAGGHEY
                     AEAATDPDSWPTQDGWNDATTSENGDKCAYFHAANITLGKYYFAVQPMWSNEANAGAG
                     GCAMSRGTGPAPVPSSVP"
     gene            complement(3171..>3962)
                     /locus_tag="VGN19_06130"
     CDS             complement(3171..>3962)
                     /locus_tag="VGN19_06130"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEV7195497.1"
                     /translation="HAPQIGVHGHVHYIELDQFLGVNYLVTIHGPLNSKVDPAVAFLD
                     TQAVIDRIVAGKFRPRSAFELSSAIISSMTRREIDMIASLAEQSGQLEQRVMSGEVMK
                     DSEGFLEDLFQVWYELLAIRTIAVHSSATYDRMARLARFLPEELEPFVADLADRFEMV
                     STMADGQRESLHGVIEFFQTRVSTHLTIASDELAKTSVVQNDDMRKISAWVAIIAVPT
                     AVTGFMGQNVPYPGFGTEQGFYASSVVMAVMAIVLYTFFRRKKWL"
BASE COUNT          688 a         1425 c         1302 g          547 t
ORIGIN      
        1 ggccagcgac tcacgcacgt tgttgagctt gcccaggctg acctgagccg cctcgaggcc
       61 ggcggagtcc ttgagccgcc ccaggtgcag ggccagcagc atccccttgc ccagctcgag
      121 cgtcatgtcc gccagcttga gctgggtggc ctggaacccc gcaaggggac ggtcgaagat
      181 ctgccgctcc cgcgcatacg cgatggtcgt ctccaagcag tctcgcgccg cacccagcga
      241 cccgaacacg atgccgaacc gtgcctcagt caggcaggac agcgggccgg agagccccgc
      301 ggcgcccgga agcatggcgc cggccggcag gcggacctca tccaggacga gctcggaggt
      361 gaccgaggcc cgcagcgaca tcttgcgttt gatctcgggg gccgagaacc taggcgtgtc
      421 agtcgggacg acgaacccgc ggatacggtc gtcggtctga gcccacacga cagcgacatc
      481 ggcgaccgag ccgttggtga tccacatctt ggtgccgttg agcacccagt cgtccccgtc
      541 gcgacgggcg cgggtgcgca tcccggccgg gttggagccg aagtcagcct cggtgagccc
      601 gaagcagccg atcgcctcac cggtggccat ccgcggcagc cactcctgct tctggtcctc
      661 gctgccgtgt ttccagatcg cgtacatggc cagcgacccc tggaccgaga ccagggagcg
      721 cacgccggag tcgcccgcct ccagctccat acaggccagc ccgtatgccg tggcgctggt
      781 gcccgcgcag ccgtacccct cgagatgcat ccccaggacc ccgagcgcgc ccagctcccg
      841 gctgagctcg cgcgccggga gggcgccggc ctcgtaccag tcacccacgt gtggcttgat
      901 cctggtttcc acgaagcggc ggaccgtgtc gcgcatgtcg cgttcttcgc cgtccagcag
      961 cgagtcggtg tcgaacaggc tcaggggcgt gacggggttg ggcgatggca tgagctgacc
     1021 tccactgatc acggctacag gctgatgacg gctacaggct agtgacgggg tgcgggcttc
     1081 gtggccgaga gggccttggc cagccagatg gtgctggcca ccaccacggc caggcagccg
     1141 gcatacgccg cgagcgtcag cggcgacacc ggaactcgtt cgtgcagtag ggccgcaccg
     1201 aggaagaccg ccacgacagg cgcggccgac tcgttggccg ggaaactggc ccccagcgca
     1261 ccgacctgga acgagacctg ggtcagcgtc agcgccaggg cgccgacgac gacgagcgag
     1321 accaatggaa cccaaccgtc ggcggactgc aggccgggcc atccggagcg ctgccaggct
     1381 gtcgcgacgg catcgagcag gacacccacc aacccgaacc aggctcctgc caccccgcca
     1441 tagacggcag cccgcaccgg tgccgaccgt ccccgcaggg ctgccagcgt ggcgccgccg
     1501 accgccagga tgacgccgac ggccaccagc gtggggcgtg ccgacagtgg ggtggcccct
     1561 cccgggtcac ccagcaccgc gaagaacaag gccagggcgg ccaggatgcc cccgcacgcc
     1621 gcatagtcgc gccaggtggg tcgtgggcct cccaacgccc agcccaccgg cagggacacc
     1681 ggaacggcaa ggacgagcag gggctggatg agcacgactg gtcccgtcgc caacgcaacc
     1741 acctgcagca ccagaccgac cgtgtcgccg ccaactgagg ccagccaacg ggggtcgcgc
     1801 agcagccgca ggagaccgcg agcgtcggcc tgaccggagc cgcgatgcgc cgcccgctgc
     1861 tggaccgccg tcgacccgcc gtaggccacc gcggacagga cggcacaggg gacggcaaca
     1921 gcgagtgaca tagggccaga cgttaccggc gcccattacc ggcacctgcg taactccccc
     1981 tcggctctct cgttctctca ctgagcggcc cggtcagggg cgacccaaca ggaggaacca
     2041 tgaaactgcg ttcgtctttc gtccttgctg ccacggccgc agtcaccctg gtggccgccg
     2101 ccgtcagcgc gccagcggca accgccgact cgggtggcgc gcccatctcc gccgccaagt
     2161 ccatcctctg gtccacggcc ggtgcgccgt ccacggcggc cacgccctcc cctacgtcgt
     2221 tggccaacaa cctgatcttc cacggcgggg ccgtggagca ctcccccaag gtcttcgtca
     2281 ccttctgggg caccgaatgg aagaacggct tccgcaccgg acccaacaac gcgtactcca
     2341 acgccacggc catgaactac gtcaacacgt tcttcggcca cctgggcggt agccgctgga
     2401 acggcacgca gacccagttc tgcgacaaca tcgccccggg cagcacgtcc tgtgccggca
     2461 gtccctatgc ccagttcatc accaacccgg cccaggttct cagcggcgcc tgggtggacg
     2521 gcaccccggc gccggcgacg atcgccacga cgggtctggc cgagaacctg acgaccgacc
     2581 cgatcgcgac cgaggccgtc cgcgcctccc agcacttcgg ttacgtgccc gacgccacgt
     2641 acttcgtctt cacgcctccg ggccacgccg ccacggcata cggcacggtg tactgcgcct
     2701 atcactccga ggtgacgaac atcggcggtc acggactccg ctacgccttc atgccgttca
     2761 cgcccgagca gggcgccggc tgcggcggca acagcgtcaa ccctaagaac gacgcgttcg
     2821 ggcacggcta cctcgatagc tactcgctgg ccggcggcca cgagtatgcc gaggcggcga
     2881 ccgaccccga ctcgtggccg acccaggacg gctggaacga cgcgacgacg tcggagaacg
     2941 gcgacaagtg cgcgtacttc cacgccgcga acatcaccct cggcaagtac tacttcgccg
     3001 tccagccgat gtggagcaac gaggcgaacg ccggcgcagg cggctgcgcg atgtctcgtg
     3061 gcaccgggcc ggctcctgtg ccgtcctccg tcccgtaacc accggaccac gcaacgcggg
     3121 cgcgtcaccc cttgaggggt ggcgcgcccg cgttcgtacc tacggtgggg tcagagccac
     3181 ttcttgcgac ggaagaacgt gtacagcacg atcgccatga cggccatgac gacgctcgag
     3241 gcgtagaacc cctgttcggt gccaaacccg gggtagggga cgttctgtcc catgaacccc
     3301 gtcaccgcgg tggggaccgc gatgatggcg acccaggcgg agatcttgcg catgtcgtcg
     3361 ttctggacca cggacgtctt cgccagctcg tccgaggcga tggtcaggtg cgtgctgacc
     3421 cgggtctgga agaactcgat gaccccgtgg agcgactcgc gctgaccatc cgccatggtc
     3481 gacaccatct cgaaccgatc cgcgaggtcg gccacgaacg gttcgagctc ttcgggcagg
     3541 aagcgagcga gccgggccat ccggtcatac gtggcactgc tgtgcaccgc gatggtgcgg
     3601 atggcgagca gctcatacca gacctggaac aggtcctcga ggaaaccctc ggagtccttc
     3661 atgacctcgc cggacatgac gcgctgctcg agctgaccgg actgctcggc caggctggcg
     3721 atcatgtcga tctcccgtcg ggtcatcgag gagatgatcg ccgaggacaa ctcgaacgcc
     3781 gaccgggggc ggaacttccc cgcgacgatg cggtcgatca ccgcctgggt gtcgaggaag
     3841 gccaccgcgg ggtcgacctt ggagttgaga ggcccgtgga tggtcaccag gtagttgacg
     3901 ccgaggaact ggtcgagctc gatgtagtgc acgtgcccgt gcaccccgat ctggggcgcg
     3961 tg
//
LOCUS       DASYFY010000299         3040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_757328, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000299 DASYFY010000000
VERSION     DASYFY010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757328"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..610
                     /locus_tag="VGN19_06135"
     CDS             <1..610
                     /locus_tag="VGN19_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020076013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195498.1"
                     /translation="DLAMMAGVATVCEECDGKRFQADVLEYKFGGRDISEVLAMSVTE
                     AEEFFGVGAAKTAAAQKILGHLSDVGLGYLTIGQPLPTLSGGERQRLKLATHLGEKGG
                     VYVLDEPTAGLHLADVEQLLGLLDRLVDSGKSVIVIEHHQAVMAHADWIIDLGPGAGH
                     DGGQVVFEGTPAEIAADRSTLTGDHLAAYVGLTATVRKRRRA"
     gene            complement(706..1137)
                     /locus_tag="VGN19_06140"
     CDS             complement(706..1137)
                     /locus_tag="VGN19_06140"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEV7195499.1"
                     /translation="MNRAATDPKVTFIQAVPLFQGLSKKELALVARVADEVTIPQGKR
                     LFTEGTLSSEFFIVVEGTVEVTRKGRHLMNCGPGDYLGDISLIVPGNRRASAEARTDV
                     RSLVMTSREFLRLLKDVPTVETKVLRYVAARVLESSDHPTS"
     gene            complement(1332..1922)
                     /locus_tag="VGN19_06145"
     CDS             complement(1332..1922)
                     /locus_tag="VGN19_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015780396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7195500.1"
                     /translation="MVTTYCTATSLDGFIADDDESLSWLFATHGHDQDPHGRYGDGDS
                     LDFDRFIETVGALVMGANTLEWLRRELTKGGKEFAWPYTQPSWVATHREVDLPSGVQR
                     FAGEVTELHGQMAEAAKGKDLWVAGGGDLAGQFFDAGLLDRVWVHVTPVVLGAGKPLL
                     PRRIRLQRRELARDGQFTAMLFDVVGPERRDDGTRG"
     gene            1970..2791
                     /locus_tag="VGN19_06150"
     CDS             1970..2791
                     /locus_tag="VGN19_06150"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEV7195501.1"
                     /translation="MGGHARGRAAAPVTRRDILSAAVACCALGATSSVQLVSPPAVPD
                     NDYDPTTTPEDRVHADPRAISLAATTRRYVAVTFDDGPDPEYTPAVLAILRRYAVTAT
                     FFVVGSNATAHPDLIARIRSQGHVLANHTQNHRWLNELSQAEVTAELTLGARHVQGGP
                     GAGLYRPPRGWTSPTVATVADRLAIRPVFWSDCLEAHLALGPRGAGQRVGNDAGPGSI
                     ILTHDGGTIVGPNPQRIDRSHSVASLPYLLQTLAKRSLTPVSVPTLLASSNRARR"
     gene            complement(2823..>3040)
                     /locus_tag="VGN19_06155"
     CDS             complement(2823..>3040)
                     /locus_tag="VGN19_06155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195502.1"
                     /translation="HRLRGWESFWLVDLLDYDTSLSQPDWWLDLTWDSVRLRLSGLAV
                     PLLAVFVASTTQPLSWASDPRVAPLVQ"
BASE COUNT          524 a         1072 c          960 g          484 t
ORIGIN      
        1 cgacctggcg atgatggccg gagtggccac ggtgtgcgag gagtgcgacg gcaaacgctt
       61 ccaggccgat gtgctggagt acaaattcgg tggtcgggac atcagcgagg tgctggccat
      121 gtcggtgacc gaggccgagg aattcttcgg tgttggcgca gccaaaacag ctgcggcgca
      181 gaagattctc ggtcacctgt ccgatgtcgg gctcggctac ctgaccatcg ggcagccgct
      241 gcccaccttg tccggcggcg aacggcagcg gctcaagctg gccacgcacc tgggcgaaaa
      301 gggcggcgtc tacgttctcg acgaaccgac ggcaggtttg cacctagccg acgtcgagca
      361 gctgctcggg ctgctggacc gactcgtcga ctccggcaag tcggtcatcg tcatcgagca
      421 tcaccaggca gtcatggcac acgccgactg gatcatcgac ctggggccag gcgccggaca
      481 cgacggcggt caagtcgtct tcgaaggaac cccggctgag attgccgccg atcggtccac
      541 cctcaccggt gatcatctcg cggcatacgt cgggttgacg gcaacggtga ggaaacgccg
      601 acgagcgtga gcggtaagaa ccgtggcggg cattcttgca ccgcatcctg gttctgcgat
      661 ggattcgcgc tgggcgcgaa tgtccagtcc aaggctgctg cggccttatg aggtcgggtg
      721 gtcgctcgac tccagcactc gcgcggccac gtacctgaga accttggtct cgacagtggg
      781 cacgtccttg agcagcctga ggaattcgcg gctggtcatc accaatgacc gaacatcggt
      841 gcgggcttcg gcgctcgcac gcctgttccc gggcacgatg agagagatgt cgcccaggta
      901 gtcgcccggt ccacagttca tgagatgccg acccttgcgt gtcacctcga ccgtgccttc
      961 gacgacgatg aagaactcgc tactcagcgt gccttccgtg aagagcctct tgccctgcgg
     1021 gatggtcacc tcgtcggcga cccgcgccac cagggccagc tccttcttgg agagaccctg
     1081 gaagaggggc acggcctgga tgaaggtgac cttgggatca gttgcagccc ggttcatgag
     1141 agcgatccta gagcccatca tcgattcgca tcacgaataa cggggggcct caggatgcca
     1201 gcccagttcg gatgagtgga ctgggcgcag ctccgggccg agctgcgccc agcccagcaa
     1261 cgccaccacg tgcgactccc gttgatttaa cgccgataat caacattatg ttaactacgg
     1321 tgtgaaaacg cctatcccct ggtgccgtca tcgcgacgct ccggccccac gacgtcgaag
     1381 agcatcgcgg tgaactggcc gtcgcgcgcc agctcgcgcc gctgcagccg gatccgtcgc
     1441 ggcagcaggg gcttgccggc cccgaggacg accggcgtga cgtgcaccca tacccggtcg
     1501 agcaacccgg cgtcgaagaa ctggcccgcg agatcgccac ccccggccac ccagaggtcc
     1561 ttccccttcg ccgcctcggc catctggcca tgcagctcgg tgacctcacc ggcgaaccgc
     1621 tgcacccctg acggcaggtc gacctcgcga tgggtggcca cccacgacgg ctgcgtgtac
     1681 ggccacgcga actccttccc gcccttcgtc agctcgcgtc gcagccactc cagcgtgttc
     1741 gcccccatga ccagcgcacc gaccgtctcg atgaagcggt cgaagtcaag tgagtcgccg
     1801 tcgccgtacc gaccgtgcgg gtcctggtcg tgcccgtggg tcgcgaacag ccacgacagg
     1861 ctctcgtcgt catccgcgat gaagccgtcg aggctcgtcg ccgtgcagta ggtcgtcacc
     1921 atggctccac gatggcacgc tcgagcctct cagcccttac gctggatcca tggggggcca
     1981 tgccaggggg cgtgcggccg cgccggtgac ccgcagagac atcctgtccg ctgcggtggc
     2041 ctgctgcgcg ctcggggcga cctccagcgt gcagctcgtc agcccaccgg cggttccgga
     2101 caacgactac gacccgacga caacccctga agaccgcgtc cacgccgacc cgagggcgat
     2161 ctcgctcgcc gccaccacgc gacgatacgt cgcggtcacc ttcgacgacg gccccgaccc
     2221 ggagtacacc ccggccgtgc ttgccatcct gcgccggtat gccgtgaccg ccaccttctt
     2281 cgtcgtcggc agcaacgcga cggcccaccc cgacctcatc gccaggatcc gttcgcaggg
     2341 gcacgtcctc gccaaccaca cccagaacca ccgctggctc aacgagctca gccaagccga
     2401 ggtgaccgcc gagctgaccc ttggcgctcg gcacgtgcaa ggtggcccgg gcgccggtct
     2461 gtatcgacca ccgcgcgggt ggacctcacc cacggtggcc accgtcgccg acaggctcgc
     2521 gatcaggccg gtgttctgga gcgactgcct cgaggcgcac ctcgcgctcg gcccccgcgg
     2581 ggccgggcag cgggtcggca acgatgccgg acccggatcc atcatcctca ctcacgacgg
     2641 cggcacgatc gtgggtccga acccacagcg catcgaccgc tcccactcgg tggcgagtct
     2701 gccctacctg cttcagaccc tggccaagcg ctcattgacc ccggtctccg tcccgacgct
     2761 gctggcctcg agcaatcggg cccgccgcta gcgagattcc cgacatcgat cacttgctcc
     2821 tgtcattgca ccagtggggc cacgcgcggg tcggaggccc atgacagcgg ttgcgtcgtg
     2881 gaggccacga acacggccag cagcgggaca gccagccctg acagcctgag ccggaccgag
     2941 tcccaagtca ggtccagcca ccaatctggc tggctgaggg aggtgtcgta gtcgagcagg
     3001 tcgaccagcc agaacgactc ccaccctcga aggcggtggt
//
LOCUS       DASYFY010000300         2717 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1598035, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000300 DASYFY010000000
VERSION     DASYFY010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1598035"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1599)
                     /locus_tag="VGN19_06160"
     CDS             complement(<1..1599)
                     /locus_tag="VGN19_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195503.1"
                     /translation="MRKTGVPLSASPPTVGDLMRQIPFPDPGRPDTRSTLRFLLWIAR
                     EQWRTQVLGMVTGMVWMVSIALIPAALGKGVDEGIVARDTAGLVRWALVLVGLGAIAA
                     TTAAVRHFFAVHNWLYASYRGAQLTALGAERAGPALTRAMPSGEVVAVFANDVMRLGG
                     LYDVMGRLSGAIVSYIVVGMILLAASPPLGWLVLLGGPVMLASLTLVVRPLQRRQAQQ
                     REEAGRLTTLGADTVAGLRVLRGIGGEQTFLRRYEQQSQRVRERGVRVAGIQAALDSA
                     QVLLPGVFVVLVTWLGARQAVAGQLTAGQLVAFYGYTAFLTMPLQTAIEVVDRGIRAH
                     IAAGKMLRILAVQADHDATRPSSSAMPPTDADLFDPVSGSRLHGGLLTALVSVRPEES
                     AAVADRLGRHGPGPHQTTWGGTRLEDLSLAEVRRNVVVSEPDPRLFTGILRDQLLPAT
                     VGAAGRREDHDRDHRIRRALDTASALEVLDAVPDGLDGLVEERGRSYSGGQRQRLALT
                     RALLTDAPVVVLVEPTSAVDAHTEA"
     gene            1647..2390
                     /locus_tag="VGN19_06165"
     CDS             1647..2390
                     /locus_tag="VGN19_06165"
                     /inference="COORDINATES: protein motif:HMM:NF014193.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HEV7195504.1"
                     /translation="MLRTALKPRWLSLFLIVVVLVVAFIQLGIWQLHVAQDKGLADAL
                     RQAQSDRPVAVETVIGPQESFPNSESDRAVTATGTYAGRDQLLVGPRRLQGRTGYWVL
                     TPLVVSATGARLPVVRGFVTDPGAVQPPPAGQVAVEGSLAPGESPAVAPSGLPGGTAA
                     ALGSVDLSVLVNRWPGELYNAFVFAESERSAGGASISASAGLQRVPPPQVTGGLKWRN
                     AAYALQWWMFAAFAVFMWFRIVRDDAQRD"
     gene            2383..>2717
                     /locus_tag="VGN19_06170"
     CDS             2383..>2717
                     /locus_tag="VGN19_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3817 domain-containing protein"
                     /protein_id="HEV7195505.1"
                     /translation="MTDIKDHASTLKALTWFKVMAILSGLALFVLITIIVLNGGFGKG
                     GASAVWSPIHGTIYFAYVISIANLGFKVGWSLPKMVGIMLTGFVPLLPFWAERRFVAE
                     VEARLEPARR"
BASE COUNT          396 a          947 c          970 g          404 t
ORIGIN      
        1 ggcctcggtg tgggcgtcga ctgcgctggt cggctccacg agcacgacca ccggcgcatc
       61 cgtgagcagt gcgcgggtga gcgcgagccg ttggcgctgt ccgccggagt aggaccgacc
      121 gcgctcctca accagtccgt ccaggccgtc tgggacggcg tcgagcacct cgagggcact
      181 cgcggtgtcg agggcgcgcc ggatccgatg gtcgcggtca tggtcctcgc gtcggccagc
      241 agccccgacc gtggccggca gcagctggtc ccggaggatg ccggtgaaca gccgcgggtc
      301 aggctcgctg accaccacgt tgcgacgaac ctcggccagg gacaggtcct ccagtcgagt
      361 cccgccccag gtcgtctggt ggggaccggg gccatgccgg ccgagtcgat cggcgaccgc
      421 ggcggactcc tcgggccgga ccgacaccag cgcggtgagc aggccgccat gcagcctgct
      481 gccggagacc gggtcgaaga ggtctgcgtc ggtcgggggc atcgcggagg acgaggggcg
      541 ggtcgcgtca tggtcggcct ggaccgccag gatccgcagc atctttccgg cggcaatgtg
      601 agcgcggatc ccgcggtcga ccacctcgat agcggtctgc agcggcatgg tcaggaacgc
      661 ggtgtagccg tagaacgcca cgagctgccc ggcggtgagc tggcccgcca ccgcctgtcg
      721 cgccccaagc caggtgacga ggacgacgaa gacgccgggc agcagcacct gggcggagtc
      781 gagggcggcc tgaatcccgg cgacccgcac tccgcgctcg cgcacacgtt gggactgctg
      841 ctcgtaccga cgcaggaagg tctgttcgcc accgatgccg cggagcactc ggagcccggc
      901 gacggtgtcc gcgccaaggg tcgtcaggcg cccggcctcc tcgcgctgct gggcctgtcg
      961 cctctgcagc gggcgcacga ccagggtcag gctcgccagc atcaccggtc cgccgagcag
     1021 cacgagccac cccaacggcg gcgaggccgc gagcaggatc atgccgacca cgatgtagct
     1081 gacgatcgca ccgctgagcc gccccatgac gtcatagagg ccacccagcc gcatgacgtc
     1141 gttggcgaag acggccacga cctcaccgga cggcatggcc cgggtgagcg ctggaccggc
     1201 gcgttctgcg cccaaggcgg tcagctgggc gccccggtag gaggcataga gccagttgtg
     1261 caccgcgaag aagtgccgga ccgctgccgt ggtcgcggcg atggcgccga ggccgaccag
     1321 gaccagcgcc caccgcacca agccggcagt gtcccgagcc acgatgccct cgtcgacgcc
     1381 ctttcccagc gcggcgggga tcagcgcgat cgacaccatc cagaccatcc cggtgaccat
     1441 gcccagcacc tgggtgcgcc actgctcccg ggcgatccag agcaggaacc gcagcgtgct
     1501 gcgggtgtcg ggtcggccgg gatcgggaaa ggggatctgg cgcatcaggt cccccaccgt
     1561 aggcggcgag gccgacaggg ggacaccggt tttccgcacg ccaggcctcg tcatcggcga
     1621 ggttcgtcgt cacgtagcct gacccggtgt tgcgaaccgc gctcaagccg cgctggctga
     1681 gcctgttcct gatcgtggtc gtcctcgtcg tcgccttcat ccagctcggc atctggcagc
     1741 tgcacgtggc ccaggacaag gggctggccg acgccttgcg tcaggcacag tccgatcggc
     1801 ccgttgccgt cgagaccgtg atcggcccgc aagagtcgtt ccccaactcc gagtcggacc
     1861 gcgcggtcac cgccaccggg acatatgccg gccgcgacca gcttcttgtg ggaccccgtc
     1921 gcctgcaagg gcggaccggg tactgggtcc tgacccctct ggtggtgtcg gcgaccgggg
     1981 cgcgcctgcc tgtcgttcgc ggcttcgtga ccgaccctgg ggcggtccag ccgccacccg
     2041 cgggacaggt cgcggtcgag ggctcgctcg cgccggggga gtcgccggcc gtcgcgccgt
     2101 cgggcctacc cgggggcacc gcggccgcac tcggttcggt cgacctgtcg gtcctggtca
     2161 accgctggcc cggcgagctc tacaacgcgt tcgtcttcgc cgagtcggag cgctctgcgg
     2221 gcggagcatc gatcagcgcg tccgcgggcc tgcaacgggt gcctccaccg caggtgaccg
     2281 gtgggctgaa gtggcgcaac gcggcgtacg cgctgcagtg gtggatgttc gcggcctttg
     2341 ccgtgttcat gtggttcagg atcgtgcgcg atgatgcaca gcgtgactga catcaaagac
     2401 cacgcgagca ccctgaaggc cctgacctgg ttcaaggtca tggcgatcct gtccgggctg
     2461 gcgctgttcg tcctgatcac gatcatcgtg ctcaacggcg gcttcgggaa gggtggcgcg
     2521 tcggccgtct ggagtccgat ccacgggacg atctacttcg cctacgtgat ctccatcgcc
     2581 aacctcgggt tcaaggtcgg ttggagcctg cccaagatgg tcggcatcat gctgaccggc
     2641 ttcgtgccac tgctgccctt ctgggccgag cggcgattcg tcgccgaggt cgaggcacgg
     2701 ctcgagccgg cccgccg
//
LOCUS       DASYFY010000301         5807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_809670, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000301 DASYFY010000000
VERSION     DASYFY010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5807
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_809670"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VGN19_06175"
     CDS             complement(<1..450)
                     /locus_tag="VGN19_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEV7195506.1"
                     /translation="MTHSGKPPVPFAYRFVVALVRPLLMVLTKRDWQGVENLPSDGGF
                     VVAPNHLSYVDPFVFGHFMYDHGWAPFFLGKEGVFRVPVLGSLLRSAEQIPVYRNTGK
                     AADAFRAAVAAVEGGKCVGVYPEGTLTRDPQLWPMVGKTGAARIALAT"
     gene            543..1445
                     /gene="cofC"
                     /locus_tag="VGN19_06180"
     CDS             543..1445
                     /gene="cofC"
                     /locus_tag="VGN19_06180"
                     /EC_number="2.7.7.68"
                     /inference="COORDINATES: protein motif:HMM:TIGR03552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043814 - phospholactate
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate guanylyltransferase"
                     /protein_id="HEV7195507.1"
                     /translation="MTTPPQRLPWRVVVPVKGGAGAKSRLHPPPGVAREALALALATD
                     CLTACLAGIPATHLIVVTSDPDVETMARRLGTALVADPGVGLNGAVAAGRDWALNEAR
                     DVASLQGTSPQAAIPVAALLGDLPSLRPGDLLAALDAAADHDLALVTDAQATGTVLLT
                     ARNGAALEPRFGAGSAARHAAAGHVSIALALPRLRTDVDNDQDLAAAVVLGVGPATHA
                     VLHRSAATLPTMQASVHTFDETSGAGSVLLDDGREVPFDAEVFAVSALRHVRPGQRLS
                     IDVGESGRVSKLWIVGIGDDQRIG"
     gene            complement(1454..2770)
                     /gene="murA"
                     /locus_tag="VGN19_06185"
     CDS             complement(1454..2770)
                     /gene="murA"
                     /locus_tag="VGN19_06185"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020013735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEV7195508.1"
                     /translation="MANILTVNGGAPLVGDIEVRGAKNLVSKAMVAALLAEGPCRLRG
                     VPEISDVKIVSGLLELHGVKVEATDRDGELLLDPTNVEQAHVADIDAHAGSSRVPVLL
                     CGPLLHRLGEAFIPDLGGCRIGERPINYHLDVLRNFGADVQKRPEGLRLTAPNGLHGA
                     RIKLPYPSVGTTEQVLLTAVRAQGVTELRNAAVEPEIMDLIAVLQKMGAVISVETDRV
                     IKIEGVERLAGFDHTAIPDRIEAGSWACAALATRGDIYVRGAQQLAMMPFLNVFRKIG
                     GAFDIDDEGIRFWHAGGTLSSLVLETDVHPGFMTDWQQPLVVALTQTSGLSIVHETVY
                     ENRLGFTDALAEMGAVIQLYRECLGGSPCRFGRANFRHSAVISGPTPLKGAEITVPDL
                     RGGFSYLIAALAAEGQSKVHGIELIYRGYERFSDKLDALGADYEVG"
     gene            complement(2850..3539)
                     /locus_tag="VGN19_06190"
     CDS             complement(2850..3539)
                     /locus_tag="VGN19_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEV7195509.1"
                     /translation="MNKAELIKELETRLGSRKAASDALTAVVDVVIREVAKGGSVAIT
                     GFGTFEQAARAARTGRNPRTGASVKIKKTVVPKFRAGSAFKDVVKNPRSLPKAAVAGA
                     RAAAGTATKAAVAGAKKTAPATKAVAKKAAPASKAVAKKTAPATKAVAKKTAPATKTA
                     AKKTAPATKTAAKKTAPATKAAAKKTAPAKKTAPAKKTAPATKAAAKKTAPAAKRAAK
                     TTTAKRTAKKA"
     gene            complement(3944..4537)
                     /gene="leuD"
                     /locus_tag="VGN19_06195"
     CDS             complement(3944..4537)
                     /gene="leuD"
                     /locus_tag="VGN19_06195"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006947538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEV7195510.1"
                     /translation="MDAFTTHTGIGVPLRRSNVDTDQIIPAAYLKRVTRTGFEDGLFA
                     AWRKDETFILNNPSYAAGSVLVAGADFGTGSSREHAVWALMNYGFRAVLSSRFADIFR
                     GNSGKQGLLTAQLAQEDIELIWKYLENEPGASVTVDLVSRTVTAGDIVATFEVDDYTR
                     WRLLEGLDDISLTLRHEQDVTDFEGRRPTYKPSIALP"
     gene            complement(4537..>5807)
                     /gene="leuC"
                     /locus_tag="VGN19_06200"
     CDS             complement(4537..>5807)
                     /gene="leuC"
                     /locus_tag="VGN19_06200"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEV7195511.1"
                     /translation="KVRRPDLTLATEDHNVPTTPGPITDLVSKTQVDTLRRNCEEFGV
                     KLFPMGDAEQGIVHVVGPQLGLTQPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVM
                     ATQTLPLKPFRTMAVTVEGELQPGVTAKDIVLAVIAKIGTGGGQGFVLEYRGSAIRAL
                     SMEARMTVCNMSIEAGARAGMIAPDDTTLEYLRGRDHAPRGADWDAAVEQWRLLRTDD
                     DAVFDAEVELDASALTPFVTWGTNPAQGLPLSESVPDPDAMADAGDRAAAQHALDYMG
                     LTAGTPLREIKVDTVFVGSCTNGRIEDLRAAAEIVKGRQVAEGVRMLVVPGSARVRLQ
                     AEHEGLDKVFTAAGAEWRLPGCSMCLGMNPDQLAPGERSASTSNRNFEGRQGKGGRTH
                     LVSPLVAAATALRGTLSSPADLVDAIEVGK"
BASE COUNT          850 a         1993 c         2003 g          961 t
ORIGIN      
        1 agtcgccagg gcgatccgag ccgctccggt cttgcccacc atgggccaca gctgcgggtc
       61 acgggtgagc gtgccctcgg gatagacgcc gacgcacttg ccgccttcca cggcggccac
      121 cgctgcccga aaagcatccg cggccttgcc ggtgttgcgg tacaccggga tctgctcggc
      181 actgcgcagg agggatccaa gcacggggac ccggaacacg ccctccttcc ccaggaagaa
      241 gggtgcccag ccgtggtcgt acatgaagtg cccgaagacg aacgggtcga cgtaggacag
      301 gtggttcgga gccaccacga acccgccgtc actgggcagg ttttcgacac cctgccagtc
      361 acgcttcgtc agcaccatga gtagcgggcg aacgagggcg acgacgaagc gataggcaaa
      421 gggcacgggc ggtttgccgc tgtgggtcac gaaagctccc tgtcgatggg ttcgggtgtg
      481 catcctcccg gctcacgggg tcggtgtcga gcatcctgcc ccgggctggg acgatcatct
      541 cgatgaccac gccgccgcag cgactgccat ggcgcgtcgt cgtgcccgtc aaggggggcg
      601 caggtgccaa gtctcggctc catcctcccc cgggggtcgc gcgcgaagcg ctggccctgg
      661 cgttggccac tgactgcctc acggcgtgtc tggccggcat accggccact cacctcatcg
      721 tcgtcacgtc cgacccggac gttgagacca tggcacgcag gctgggcacg gctctcgtgg
      781 ccgacccggg agtgggcctc aacggtgctg ttgcggcggg ccgcgactgg gccctgaacg
      841 aggctcgcga cgtcgcatcg ctgcagggga cgtcgccaca ggcggcaatc ccggtggccg
      901 cgctgctcgg cgaccttccg tcgctgcggc cgggcgacct cctggccgca ctcgatgcgg
      961 ccgccgacca cgacctggcc ctggtcaccg atgcgcaggc gactgggacc gtcctgctga
     1021 ccgcccgcaa cggcgccgcc ctcgagccgc gcttcggagc ggggtcggca gcccgccatg
     1081 ccgccgccgg tcacgtctct atcgcgctgg cgctcccacg gctacggacc gacgtcgaca
     1141 acgaccagga cctggccgct gctgtggtgt tgggcgtcgg tccagccacc cacgcggtgc
     1201 tccatcggtc ggcggctacg ctgccgacca tgcaggccag cgtgcacacc ttcgacgaga
     1261 ccagcggggc tggctcggtg ctcctcgacg acggacgcga ggtgccgttc gacgcggagg
     1321 tgttcgcggt gagtgcgctg cgtcacgtgc gtccgggtca gcgcctgagc atcgacgtcg
     1381 gtgagagcgg tcgggtctcg aaactctgga tcgtcggaat cggcgacgac cagcgcatcg
     1441 gctgaccgat cgctcagccg acctcgtagt cggcgcccag ggcgtcgagc ttgtccgaga
     1501 accgctcgta gccgcggtag atcagctcga tgccgtgcac cttggactgg ccctccgcag
     1561 caagcgcggc gatcaggtag ctgaacccgc cacgcaggtc aggaacggtg atctcggcgc
     1621 ccttgagcgg cgtcggcccg ctgatgacgg cactgtgcct gaagttcgcc cgaccgaacc
     1681 ggcagggcga gccgcccaga cactcgcggt agagctggat gacagcgccc atctccgcca
     1741 gggcatcggt gaacccgaga cggttctcat agaccgtctc gtgcacgatc gacaggccgg
     1801 aggtctgcgt gagcgccacc accagcggct gctgccagtc ggtcatgaac ccggggtgca
     1861 catcggtctc gaggaccagg gagctcaggg tgccgccggc gtgccagaac cggatgccct
     1921 cgtcgtcgat gtcgaacgca ccgccgatct tccggaagac gttgaggaac ggcatcatcg
     1981 ccagctgctg agcaccacgg acgtagatgt cgccccgagt ggccagggca gcgcaggccc
     2041 acgatcccgc ctcgatgcga tccgggatgg cggtgtggtc gaagccggcg agacgctcga
     2101 caccttcgat cttgatgacc cggtcggtct cgacgctgat cacggcgccc atcttctgca
     2161 ggacggcgat caggtccatg atctcgggtt cgacggcggc gttgcgcagc tcggtgactc
     2221 cctgcgcccg aacggccgtc aacagcacct gctcggtggt gcccacgctc gggtacggca
     2281 gcttgatccg tgcaccatgc agtccgttgg gcgcggtgag ccgcaggccc tcgggccgct
     2341 tctgcacgtc cgccccgaag ttgcgtagga cgtcgaggtg gtagttgatc ggacgctccc
     2401 cgatgcggca tccacccagg tcggggatga acgcctcgcc cagacgatgc agcagcggtc
     2461 cgcacagcag cacgggcacg cgcgaggagc cggcgtgcgc gtcgatatcc gcgacgtgcg
     2521 cctgctccac gttcgtcggg tcgagcagca gttcaccgtc acggtcggtg gcctcgacct
     2581 tgacaccgtg cagctcgagg agcccggaca cgatcttgac gtcggagatc tctggaaccc
     2641 cacggaggcg acacgggcct tcggcgagca gggcggcgac catggccttg gacacgaggt
     2701 tcttggcgcc gcgcacctcg atgtcgccga caagaggggc tccgccgtta accgtgagga
     2761 tgttcgccat ggggccaagc atcgcaaacg ccagcggcgg ccgacacccc gaggggtggc
     2821 gactgccgcg tggagggtat gccgcaggct caggccttct tggctgtgcg cttcgcggtg
     2881 gtcgtcttcg cagctctctt ggcggcgggc gccgtcttct tggcagcggc cttggtggcc
     2941 ggtgccgtct tcttggccgg agcagtcttc ttggccggtg ccgtcttctt ggcggcggcc
     3001 ttggtggccg gtgccgtctt cttggcggcg gtcttggtgg cgggtgccgt cttcttggcg
     3061 gcggtcttgg tggccggtgc cgtcttcttc gctaccgcct tggtggccgg agccgtcttc
     3121 ttcgctaccg ccttgctagc gggtgctgcc ttcttcgcta ctgccttcgt ggccggggcc
     3181 gttttcttcg cgccggcgac ggcagccttg gtcgcggtgc cggccgcggc ccgggctccc
     3241 gccacagcgg ccttcgggag ggacctcggg ttcttcacga cgtccttgaa agcggagccg
     3301 gcgcggaact tgggcaccac ggtcttcttg atcttcacgc tggcccccgt gcgagggttt
     3361 cgacccgtgc gggccgcccg ggcggcctgc tcgaacgtac cgaagccggt aatggcaacg
     3421 ctgccgccct tggcgacctc ccggatgacc acgtcgacga ccgccgtcag agcatcgctg
     3481 gcggccttgc ggctaccgag gcgggtctcc agctccttga tcagttctgc cttattcacg
     3541 tcttcccctc cacagggtct gtgagccgga ccccttagtc cgacgaggtg tgcggtcgag
     3601 ccgatgcccg acgtgaccct gacgttaggg ctgttgtgcg cacgagtcca ccatccggac
     3661 cccctgatcc ttttgtgtcg caacggattc agggctcggc agcgccctca ccagcgctga
     3721 gaccgggacg acagcgcccc agggagcaat tcaacgtacg ctggcggcca tcggtgaaag
     3781 cggcgaaatc cttaccggca caacggagtt cgccgaccct agacccgcgc ggccggtcca
     3841 gggcagcgca ccgggacctc cgggccgggg gggcccaacg cccgatcccc actggggtcg
     3901 ggccggcggg gcggccgggg cggtgacggc gcgtcgccgc gggtcaggga agggcgattg
     3961 acggcttgta cgtcgggcgc cgaccctcga agtccgtgac gtcctgctcg tggcgcagcg
     4021 tcaggctgat gtcgtcaaga ccctcgagca gccgccaccg ggtgtagtcg tcgacctcga
     4081 aggtggcgac gatgtcacca gccgtgaccg tgcgcgacac gaggtccacc gtgacggagg
     4141 ccccgggctc gttctccagg tacttccaga tcagctcgat gtcctcttgg gccagctggg
     4201 cagtgagcag cccctgtttg ccgctgtttc cgcggaagat gtccgcgaaa cgggaggaca
     4261 gcacggccct gaagccatag ttcatcagtg cccacaccgc gtgctcgcgc gacgagcccg
     4321 tgccgaagtc ggcgccggcg accagaaccg agcccgcggc atacgaaggg ttgttgagga
     4381 tgaacgtctc gtccttgcgc cacgcggcaa acaggccgtc ctcgaagccg gtccgggtga
     4441 cccgcttgag atacgcggca gggatgatct ggtccgtgtc gacgttgctg cgacgcaggg
     4501 gtacgccgat gcccgtgtgg gtggtgaacg cgtccatcac ttgcctacct caatggcgtc
     4561 gacgagatcg gccggactgg acagcgtgcc ccgcagggcg gtggccgcgg ccacgagggg
     4621 gctgaccaga tgcgtccggc cacccttgcc ctggcgaccc tcgaagttgc ggttcgacgt
     4681 cgaggcgctg cgctcccccg gggccagctg gtcagggttc atccccaggc acatcgaaca
     4741 gccgggcagc cgccactccg ctccggccgc ggtgaagacc ttgtccagcc cctcgtgctc
     4801 ggcctgcaga cgcacccttg cggagccggg gacgacgagc atgcgcacgc cctcggcgac
     4861 ctgccggccc ttgacgatct cggcggccgc gcgcaggtcc tcgatgcgtc cattggtgca
     4921 ggacccgacg aacaccgtgt cgaccttgat ctcgcgcaag ggggtgccgg cggtgaggcc
     4981 catgtagtcc aaggcgtgct gcgccgccgc tcggtccccc gcgtcggcca tggcgtccgg
     5041 gtccggcacg gactcgctga gcggcagacc ctgggccggg ttggtccccc aggtgacgaa
     5101 cggcgtcagg gcgctcgcgt cgagctccac ctcggcgtcg aagaccgcgt cgtcgtcggt
     5161 gcgcagcagg cgccactgct cgacggcagc atcccagtcg gcgcccctcg gcgcgtggtc
     5221 gcgcccgcgc aggtactcca gggtcgtgtc gtcgggcgcg atcatcccgg cacgggctcc
     5281 ggcctcgatc gacatgttgc atacagtcat ccgagcctcc attgacagcg cgcgaatggc
     5341 actgccgcgg tactccagga cgaacccctg tccaccgccg gtaccgatct tggcgatgac
     5401 ggcaagcacg atgtccttgg ccgtgacccc cggctgcagc tcgccctcca cggtcaccgc
     5461 catggtcctg aacggcttga gcggcaacgt ctgggtggcc atgacgtgct cgacctcgga
     5521 cgtgccgatc ccgaacgcga gcgccccgaa ggcgccgtga gtggaggtat gcgagtcgcc
     5581 acaaacgatg gtcatgcccg gttgggtcag gcccagctgg ggacccacga cgtggacgat
     5641 gccctgctca gcgtcaccca tcgggaacag cttgacgccg aactcctcgc agttgcgtcg
     5701 cagcgtgtcg acctgggtct tgctgaccag gtcggtgatg ggtccgggcg tggtggggac
     5761 gttgtgatcc tcggtagcca gcgtgaggtc cggtcgtcgg accttgc
//
LOCUS       DASYFY010000302         1870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1545677, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000302 DASYFY010000000
VERSION     DASYFY010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1545677"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VGN19_06205"
     CDS             complement(<1..388)
                     /locus_tag="VGN19_06205"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEV7195512.1"
                     /translation="MPLSSSPEQPVPVRTVARMIGEWVGRLGRVWVEGQVAQMSRRPG
                     PGTVFLTLRDPVAEASLSITVSRAVVDAVVPPLAEGARVLVHAKPDFWLARGTLSLAA
                     TEIRTVGLGELLARLERLKAVLAAEGL"
     gene            421..1398
                     /locus_tag="VGN19_06210"
     CDS             421..1398
                     /locus_tag="VGN19_06210"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEV7195513.1"
                     /translation="MPVAASDGRRRVLLATPRGYCAGVDRAVVTVEKALELYGAPVYV
                     RKQIVHNTYVVQTLEARGAVFVDETDEVPEGALVVFSAHGVAPSVHEEAQHRRLRTID
                     ATCPLVTKVHLEARRFADEGLQILLIGHHGHEEVVGTSGEAPEHITLVDGPEAVADLQ
                     VPDPDRLAWLSQTTLSVDETEETVRALRDRFPNLADPPSDDICYATQNRQEAVKDIAA
                     ACDVVVVVGSGNSSNSVRLVEVALAAGARSAYLVDTADEMQEPWFADATTIGVTSGAS
                     VPEILVRGVLDRLAALGYDDVQQVQSAQEHLLFALPRELRRDLKAAQNS"
     gene            complement(1376..>1870)
                     /locus_tag="VGN19_06215"
     CDS             complement(1376..>1870)
                     /locus_tag="VGN19_06215"
                     /inference="COORDINATES: protein motif:HMM:NF042451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6542 domain-containing protein"
                     /protein_id="HEV7195514.1"
                     /translation="RSIPVPTDQGSSPRVPSSPAGAQPQPAQAYPSPRVVPGSPGLTV
                     SGVAVVVFAVSLVGMVVDAFTGGGIGWLFGGFFVAACCYVAAQVRWSDLIWAVIVPPL
                     VFAVLVMAHGAYTGGSGSLAEVVGAMNGLLDFGPMLWVGTGAAAAIVAWRRWGSGARS
                     SARP"
BASE COUNT          300 a          688 c          647 g          235 t
ORIGIN      
        1 acaggccctc cgctgcgagc acggccttga gccgctccag ccgggccagc agctctccca
       61 ggcccaccgt gcggatctcg gtcgcggcca gtgacagggt tccgcgggcg agccagaagt
      121 cgggcttggc gtgcaccagc acgcgggcgc cctcagcaag cggcggcacc accgcatcca
      181 caacagcacg tgacaccgtg atgctcagcg aggcctcagc cacggggtca cgcagggtca
      241 ggaagaccgt tccgggaccg ggccggcggg acatctgggc cacctgcccc tcgacccaga
      301 cccggccgag tcgacccacc cactcgccga tcatccgggc gaccgtgcgc accggcacgg
      361 gctgctcggg cgaactgctc aacggcatgg gggcacagcc taggcgccta ccatggacgc
      421 atgcctgtcg ccgcatccga tggccgccgc cgcgtgctcc ttgcgacgcc gcgcggctac
      481 tgcgccggcg tggaccgggc ggtggtcacg gtggagaagg ccctggagct gtatggggcg
      541 ccggtgtacg tccgcaagca gatcgtgcac aacacctacg tggtccagac cctggaggcc
      601 cggggggcgg tgttcgtcga cgagaccgac gaggtgcctg agggtgccct ggtggtgttc
      661 tccgctcacg gggtggcgcc ctcggtgcac gaggaggcgc agcaccgccg gttgcgaacc
      721 atcgacgcga cctgcccgct ggtcacgaag gtgcacttgg aggcccgccg gttcgctgac
      781 gagggactgc agatcctgct catcggccac cacgggcacg aagaggtggt gggcacctcc
      841 ggggaggccc cggagcacat cacgctggtg gacggacccg aggcggttgc cgaccttcag
      901 gtccccgacc cggaccggct ggcgtggctg tcgcagacca cgctgtccgt ggacgagacc
      961 gaggagacgg tccgcgccct ccgggaccgc ttcccgaacc tcgctgaccc gcccagcgac
     1021 gacatctgct acgccaccca gaaccggcag gaagctgtga aggacatcgc cgccgcgtgc
     1081 gacgttgtcg tggtcgtcgg gtcgggcaac tcctcgaact cggtgcgcct ggtcgaggtc
     1141 gcgctcgcgg cgggcgcccg ctccgcctac ctggtcgaca ctgccgacga gatgcaagaa
     1201 ccgtggttcg ccgatgccac cacgatcgga gtcaccagcg gagcctccgt gccggagatc
     1261 ctggtgcgcg gcgtcctgga ccggctcgcc gccctcggct acgacgatgt ccagcaggtg
     1321 cagtccgccc aggagcatct gctgttcgca ttgccccggg agctgcgccg cgacctcaag
     1381 gccgcgcaga actcctagcc ccgctgcccc aacggcgcca cgccacgatc gcggctgcgg
     1441 cacccgtgcc gacccacagc atcggcccga agtccagcag cccgttcatc gccccgacca
     1501 cctcggcgag gctgccgctg ccaccggtgt atgcgccgtg tgccatgacc agcaccgcga
     1561 acaccagcgg gggcacgatc acggcccaga tgaggtcgct ccagcgcacc tgcgccgcga
     1621 cgtagcagca cgctgcgacg aagaacccgc cgaacagcca cccgatcccg cccccggtga
     1681 acgcatcgac caccatgccg acgagggaga cggcgaacac gacgaccgca acgccgctga
     1741 ccgtcagccc gggggagccg ggcacgaccc tgggggaggg gtacgcctgc gcgggctgcg
     1801 gctgggcgcc ggctggcgac gatgggaccc ggggcgacga cccttggtct gtcggcaccg
     1861 ggatggagcg
//
LOCUS       DASYFY010000303         2049 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1177594, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000303 DASYFY010000000
VERSION     DASYFY010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177594"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..748
                     /locus_tag="VGN19_06220"
     CDS             <1..748
                     /locus_tag="VGN19_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEV7195515.1"
                     /translation="GMIRHWNRHLRLERDSAVRARMMRSRVINAVGATMSGLVLVVVL
                     LTKFVHGAGYAIAAMVVLFFIMLRIRKHYERVRDELQISEDDVDVQLLPSRVHAIVLV
                     SKIHKPTLRALAYARATRPAKLEAITVNVEPDETKALQEEWDRRDIPVPLKALDSPYR
                     EISRPVVEYVRSLRSGHPRDVVVVYIPEYVLGKWYEQVLHNQSALRLKGRLLFTPGVM
                     VASVPWQLASSEGQEERFDGPTAGAVRLGQ"
     gene            738..2033
                     /locus_tag="VGN19_06225"
     CDS             738..2033
                     /locus_tag="VGN19_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEV7195516.1"
                     /translation="MASEDLSGALSVGDLVDLEVGPIAHGGFCVARHEGRVVFVRHTV
                     PGERIRARVTEAREGQRFVRADCVEVLSPSPERVTPPCPYAGPGQCGGCDFQHVRLPY
                     QRELKAAVVRELFARLAGLEVEVVVQAVPGDVDGVGWRTRVEFAVDGSGRAGLREHRS
                     HVVVPVTTCLIADRRIVETGVLEQDWSGHEGVDVVAPSVGEPVTVALPAEVGEVPIVT
                     EHVAAQRFSGDLEASARGFWQVHPGAAATFVDAVLELLEPRPGETALDLYAGVGLFAA
                     ALAATVGADGKVVAVESDPDAVAGAERNLAAYPSVVAVRARVDDAFGVPRASRSGPTA
                     RRAQRSRKLRRHPLLPLRADLVVLDPPRTGAGRGVVDQVAGLGPRSIAYVACDPAALA
                     RDTAYLREAGYSLRELRAYDAFPMTQHLECIALFGPSPA"
BASE COUNT          269 a          685 c          763 g          332 t
ORIGIN      
        1 cggcatgatc cggcactgga accgccacct tcgcctggag cgggacagcg cggtgcgggc
       61 ccggatgatg cgcagccggg tcatcaacgc ggtcggtgcg accatgtccg ggctggtcct
      121 ggtcgtggtg ctgttgacca agttcgtgca tggcgcgggc tatgcgatcg ccgccatggt
      181 cgtgctgttc ttcatcatgc tgaggattcg caagcactac gagcgagtcc gcgacgagct
      241 gcagatcagc gaggacgacg tcgacgtcca gctgctgccc agccgcgtgc acgccatcgt
      301 cctggtgtcc aagatccaca agccgacctt gcgagccctg gcctacgcgc gcgccacccg
      361 gcccgccaag ctcgaagcga tcacggtcaa cgtcgagccg gacgagacca aggcgctgca
      421 agaggagtgg gaccgccgcg acatcccggt cccgctgaag gcgctcgact cgccgtaccg
      481 cgagatcagc cgtccggtgg tcgagtacgt caggtcactg cggtcgggcc atccgcgtga
      541 tgtggtcgtc gtctacatcc ccgagtacgt cctcggcaag tggtacgagc aggttctgca
      601 caaccagagc gcgttgcggc tcaagggtcg gctgctcttc acgcccgggg tgatggtcgc
      661 gagcgtcccc tggcagctgg cgtcgtccga gggccaggag gagcgcttcg acggtccgac
      721 cgccggcgcg gttcgccttg gccagtgagg acctgagcgg ggcgctgtcg gtgggggatc
      781 tggtcgacct ggaggttggc ccgatcgcgc acggcgggtt ctgcgtggcg cggcacgaag
      841 ggcgggtggt gttcgtccgg catacggtgc cgggggagcg gatccgcgcc cgggtgaccg
      901 aggcccgtga gggccagcgc ttcgtgcggg ccgactgtgt cgaggtgctc agccccagcc
      961 cggaacgggt gacacctccc tgtccgtatg ccgggccggg ccagtgtggg ggctgcgact
     1021 tccagcatgt gcgccttccg taccagcgtg agctcaaagc agctgtcgtg cgggaactgt
     1081 tcgcccgcct ggctggcctg gaggtcgagg tcgtcgtcca agcggtccct ggcgacgtcg
     1141 atggcgtcgg ctggcgcacc cgggtggagt tcgcggtgga cggctcgggt cgggcagggc
     1201 tgcgcgagca ccgctcgcac gtcgtggttc ctgtgaccac gtgcctgatc gccgacaggc
     1261 gcatcgtcga gaccggtgtg ctggagcagg actggtccgg acacgagggt gtcgacgtcg
     1321 tcgcgccgtc ggtaggggag cccgtgacgg tggcgctccc ggccgaggtg ggcgaggttc
     1381 ccatcgtcac ggaacacgtt gccgcgcagc ggttctcggg ggacttagag gcctccgcgc
     1441 gggggttctg gcaggtgcat cccggggcgg cggcgacctt cgtcgacgct gtcctcgagc
     1501 tgctcgagcc gcggccaggc gagacggccc tggacctcta tgcgggcgtc ggtctcttcg
     1561 ctgccgcgct cgcggcgacg gtgggcgctg acggcaaggt ggtggcggtc gagtcagacc
     1621 ctgacgcggt ggccggagcc gaacgcaacc tggcggcata cccctcggtg gtggccgtcc
     1681 gagcgagagt cgacgacgcg ttcggggtgc cacgggccag ccgatcgggc cccaccgccc
     1741 gccgggccca gcgctcccgc aagctgcggc ggcaccccct gctgcccctg cgcgccgatc
     1801 tggtggtgct cgacccgccc cgcaccggcg ccggcagggg agtcgtcgac caggtggccg
     1861 ggttgggacc caggtcgatc gcctatgtcg cctgcgaccc cgcggcattg gcgcgcgata
     1921 cggcctacct gcgcgaggcg ggttattcgc tgcgcgagct gcgggcctac gacgccttcc
     1981 ccatgaccca gcacctggag tgcatcgccc tgtttgggcc ctcgcccgcg tgacctaggc
     2041 tcgctgccc
//
LOCUS       DASYFY010000304         1510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1546141, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000304 DASYFY010000000
VERSION     DASYFY010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1546141"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..666)
                     /locus_tag="VGN19_06230"
     CDS             complement(73..666)
                     /locus_tag="VGN19_06230"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195517.1"
                     /translation="MSATHVSTSPLTKERWEDVIALFGTRGDPSWCWCQFFHDTGHAP
                     RRTADQNRADLHSQVTTGATPPGLLAYAGDEPVGWVQVGPRTAYRRLCESRALAEVTG
                     DDLHDDQVWAVTCFVVKVGRRRLGISTRLLAAAVEFAAGHGARVLEGHPVDVAARPSG
                     RAPGAELYHGVATTFAAAGFTEVGRTSPARPVMRLSL"
     gene            complement(699..>1510)
                     /locus_tag="VGN19_06235"
     CDS             complement(699..>1510)
                     /locus_tag="VGN19_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195518.1"
                     /translation="RYEEMASEAERTRKLDFEEIQIPAGPRLGSIVIEAKKLQKGFDG
                     RSLIDGLSFSLPPNGIVGVIGPNGVGKTTLFKTIVGLEEPDDGLVDVGETVKISYVDQ
                     SRGGLDPNKNLWETVSGGHDYINVGQVEIPSRAYVSQFGFKGPDQQKKAGVLSGGERN
                     RLNLALTLKEGGNLLLLDEPTNDLDVETLGSLENALLDFPGCAVVISHDRWFLDRVAT
                     HILAYEGDEENPAQWYWFEGNFESYEANKVERLGADAARPHRVTYRKLTRD"
BASE COUNT          229 a          516 c          507 g          258 t
ORIGIN      
        1 gccgggccag ctgaagtacg aaacctgaag tcctagtcgc atacgggcat cgtgtgcaga
       61 tctggtctgc tttcacaagg agagtcgcat caccggccgc gccggagagg ttcggccgac
      121 ctcggtgaag ccggcggccg cgaacgtggt cgcaaccccg tggtacagct cggccccagg
      181 cgccctgccc gacggccgag ccgccacgtc gaccgggtgt ccctcgagca cgcgcgcgcc
      241 gtgcccggcg gcgaactcga cggcagcggc cagcagcctg gtgctgatcc ccagcctgcg
      301 ccgccccacc ttcacgacga agcaggtcac ggcccatacc tggtcgtcat ggaggtcatc
      361 gccagtcacc tccgcgagtg ccctgctctc gcacagtcgc cggtatgccg tgcgcggccc
      421 gacctggacc cacccgaccg gctcgtcgcc ggcatacgcc agcagcccgg gcggcgtcgc
      481 accagtcgtg acctggctgt ggaggtcggc cctgttctgg tcggcagtcc ggcggggggc
      541 atggcccgtg tcatggaaga actggcacca gcaccacgac gggtcgccac gggtaccgaa
      601 gagcgcgatc acgtcctccc accgctcctt cgtcaggggc gaggtgctga cgtgcgtcgc
      661 gctcatcgac ttctcgggcg gccggctcgg aagatgccct agtcgcgggt cagcttgcgg
      721 taggtgacgc ggtgggggcg tgctgcgtcc gcaccgaggc gctcgacctt gttggcctcg
      781 tacgactcga agttcccctc gaaccagtac cactgggctg ggttctcttc gtcgccctcg
      841 taggcaagga tgtgagtggc cacgcggtcg aggaaccaac ggtcgtggct gatgaccacc
      901 gcgcagccgg gaaagtcgag cagggcattc tcgagggagc ccagcgtctc gacgtccagg
      961 tcgttggtgg gctcgtcgag gagcaggagg ttgccaccct ccttgagcgt cagagccagg
     1021 ttgaggcggt tgcgctcgcc acccgacagg acgcctgcct tcttctgctg gtccgggccc
     1081 ttgaacccga actgcgagac gtaggcccgc gaagggatct cgacctgccc gacgttgatg
     1141 tagtcgtggc cgcctgagac ggtctcccag aggttcttgt tgggatcgag gccaccgcgg
     1201 ctctggtcga cataggagat cttgacggtc tcaccgacat cgacgaggcc gtcgtcgggc
     1261 tcctcgaggc ccacgatggt cttgaacagg gtggtcttgc cgacgccgtt cggcccgatc
     1321 acgccgacga tgccgttcgg cggcaggctg aagctcagcc cgtcgatgag cgaacgcccg
     1381 tcgaagccct tctgcagctt cttcgcctcg atcacgatgc tgccgaggcg gggacctgcg
     1441 gggatctgga tctcctcgaa gtcgagcttg cgcgtccgct ccgcctccga cgccatctcc
     1501 tcgtagcgcg
//
LOCUS       DASYFY010000305         3199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_968354, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000305 DASYFY010000000
VERSION     DASYFY010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968354"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1413
                     /locus_tag="VGN19_06240"
     CDS             <1..1413
                     /locus_tag="VGN19_06240"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017076 - purine nucleotide binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (GTP)"
                     /protein_id="HEV7195519.1"
                     /translation="VEITDSEYVVVSMRVMARTGVNVLRRIEELGEDAKYIPALHSVG
                     APLEPGQQDVKWPCNPEKYIVQFPEERTIWSFGSGYGGNALLGKKCYSLRIASAMARD
                     EGWLAEHMLILKLISPEQQVYYIAAAFPSACGKTNLAMLAPTVPGWKVETLGDDIAWM
                     RFGEDGRLYAVNPEFGFFGVAPGTNEHTNPNAMKTINKGNSVFTNVALTDDNDIWWEG
                     LENMPAHATSWKGEDWTPEIGESGVLSSHANSRYCTPIEQCDILAEEYYDPKGVPISA
                     IFFGGRRKTTVPLITESREWVHGTFMGATLSSETTAAATGAVGVVRRDPMAMLPFIGY
                     NAGDYFQHWINVGKDADAAKLPKIFYVNWFRRDDEGGFLWPGFGENSRVLKWAIERIE
                     GKAAAIETPIGHVPTPESLDTDGLDMSDADIAAALKVDPEEWKAEIPQIEEWFAKFGE
                     TLPTQLRIELDGLKARLGVE"
     gene            1567..3048
                     /locus_tag="VGN19_06245"
     CDS             1567..3048
                     /locus_tag="VGN19_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195520.1"
                     /translation="MAHSGIEPSGVVFPEVNGKRSTSALGRAVVADALREVDPVGAQG
                     AERETNWRQGYLSHFRRMVEAGLLRDGDAAVDVARAGLASLHTRMRATAGEREVPLAE
                     AFSSGGGPALETATVRGTGQRASELSLPLHGERLRGDRLHRQLDDWSARGVLEPSAAE
                     AVRLVLANPDWLDLSDQRVVVLGAGAEMGPLQALLSWGGDVIGVDLPRPEIWKRVLEV
                     ADASAGTLHLPVAAGKPWSAGDLTTHAGADLLHALPAVADWVGGLNGPLVLGNYVYAD
                     GATNVRVSTAVDALSVELLRRRHDVSLAFLATPTDVFAVPVDAVDQSTRNYRSPSAVM
                     RITRPGLRTLSGGRLLQRNYAPGSDPGINDSLVPQQGPNYALAKRLQRWRATVARRDG
                     VRVSLNVAPPTRTRSVVKNRALASAYAGAHRFGIEVFEPATSNTLMAALLVHDLRTGQ
                     PEPTAPWREEARDAVHGGLWRTPYAPRSALGLAVLIGLGSART"
BASE COUNT          517 a         1104 c         1118 g          460 t
ORIGIN      
        1 gtcgagatca ccgactccga gtacgtcgtg gtgtcgatgc gcgtcatggc tcgcaccggc
       61 gtcaacgtgc tgcgccgcat cgaggagctc ggcgaggacg cgaagtacat ccccgcgctg
      121 cactccgtgg gcgccccgct cgagccgggc cagcaggacg tcaagtggcc ctgcaacccc
      181 gagaagtaca tcgtccagtt ccccgaggag cggacgatct ggtcgttcgg ttcgggctac
      241 ggcggcaacg ctctgctggg caagaagtgc tactcgctgc ggatcgcgag cgcgatggcg
      301 cgcgacgagg gctggctcgc cgagcacatg ctcatcctca agctcatctc ccccgagcag
      361 caggtctact acatcgcggc cgccttcccc agcgcctgcg gcaagaccaa cctcgccatg
      421 ctggcgccga cggtgcccgg ctggaaggtc gagacgctgg gtgacgacat cgcttggatg
      481 cgtttcggcg aggacggtcg cctgtacgcc gtgaaccccg agttcggctt cttcggcgtg
      541 gccccgggta ccaacgagca cacgaacccc aacgcgatga agaccatcaa caagggcaac
      601 tcggtcttca ccaacgtcgc gctcacggac gacaacgaca tctggtggga gggcctggag
      661 aacatgccgg cccacgccac gtcgtggaag ggcgaggact ggacccctga gatcggggag
      721 tccggcgtcc tcagctcgca cgcgaacagc cggtactgca cgccgatcga gcagtgcgac
      781 atcctcgccg aggagtacta cgaccccaag ggtgtgccga tctcggcgat cttcttcggt
      841 ggccgccgca agacgaccgt cccgctgatc accgagtccc gcgagtgggt gcacggcacg
      901 ttcatgggcg ccaccctctc ctcggagacc accgccgccg cgaccggcgc ggtgggtgtc
      961 gtgcgacgcg acccgatggc gatgctgccg ttcatcggct acaacgccgg ggactacttc
     1021 cagcactgga tcaacgtggg caaggacgct gacgcggcaa agctcccgaa gatcttctac
     1081 gtcaactggt tccgccgcga cgacgagggt ggattcctct ggccgggctt cggcgagaac
     1141 agccgtgtcc tgaagtgggc catcgagcgc atcgagggca aggcagcagc catcgagacc
     1201 ccgatcggcc acgtcccgac cccggagtcg ctcgacaccg acggcctcga catgagcgac
     1261 gccgacatcg cggcggccct caaggtcgac cccgaggagt ggaaggccga gatcccgcag
     1321 atcgaggagt ggttcgccaa gttcggcgag acgctcccca cccagctgcg gatcgagctc
     1381 gacggactga aggcccgcct cggcgtggag tgacaaagcg tggagtgaca aagcactgac
     1441 cgtatgccgc tcgcggcgac ggagtcgatg gcccggaacc gctgcggttc cgggccatcg
     1501 tggttccgct ccttcgcggt gacgggcctt cgcgcgtccg gtgcgccgtt cggcatactc
     1561 gcgggcatgg cgcacagtgg aatcgaaccc agtggagtgg tctttccgga ggtcaacggc
     1621 aagcgaagca cctccgcgct cgggcgtgca gtggtggcgg acgcgctgcg cgaggtcgac
     1681 ccggtgggcg cccagggcgc cgaacgcgag accaactggc ggcagggata cctcagccac
     1741 ttccgcagga tggtcgaggc cggactcctt cgggatggcg acgcagcggt cgacgtcgcc
     1801 cgagcggggt tggcatcact acataccagg atgcgggcga ccgcaggcga gcgcgaagtc
     1861 cctttggccg aggcgttcag ctcgggtggc ggtcctgcgc tggagaccgc cacggtgcga
     1921 ggcacggggc agcgggcgag cgagctcagc ctgcccctgc atggcgagcg gctgaggggc
     1981 gaccgcctgc atcgccagct cgacgactgg tcagcccgcg gagtgctgga gccctcggct
     2041 gcggaagccg tgcgcctggt cctggcgaac ccggactggc tcgacctgtc cgaccagcgc
     2101 gtggtcgtct tgggggcagg agcggagatg gggcccctgc aggcgctcct gtcctggggt
     2161 ggggacgtca tcggggtgga cctgccgcgg cccgagatct ggaaacgcgt cctcgaggtc
     2221 gccgacgcct ccgccggcac gctgcatctg cccgtcgctg ccggcaagcc ctggtccgcc
     2281 ggagacctca cgacccacgc aggggctgat ctgctgcacg cgctgcccgc ggtcgcggac
     2341 tgggtgggcg gcctgaacgg tccgctggtc ctgggcaact acgtgtatgc cgacggggcc
     2401 acgaacgtgc gcgtctccac cgccgtggac gccctgagcg tcgagctgct gcgtcggcgg
     2461 catgacgtgt cgctggcctt cctggcgacc cccaccgacg tgttcgccgt acctgttgac
     2521 gcggtcgacc agtcgacccg gaactaccga agcccctcgg cggtcatgcg tatcactcgg
     2581 cccggactac ggaccctcag cggcggtcga ctgctccagc gcaactacgc gcccggctcc
     2641 gacccgggca tcaacgacag cctggtgccg cagcagggac cgaactatgc gctcgccaag
     2701 cgcctgcaac ggtggcgggc caccgtggcc cgccgggacg gggtgcgcgt ctcgctgaat
     2761 gtcgctcctc cgacccggac ccgctcggtg gtcaagaacc gagccttggc gagcgcgtac
     2821 gccggggcgc accggttcgg catcgaggtg ttcgagccgg ccaccagcaa caccctcatg
     2881 gccgcgctgc tcgtccacga cctgcgcacc gggcaacccg agccgacggc cccctggcgt
     2941 gaggaggcgc gagacgcagt ccacggcggc ctgtggcgca cgccctacgc gccgcgcagc
     3001 gcgctggggc tcgctgtcct gatcggactg ggctcggccc ggacctgagc tcgctgagac
     3061 gcgagcggac ggactgagcc gcagaccgga agcacgctga agtccatgcg cacagccgcg
     3121 cctgtccggt gttggtgcga cgaggcggag ccgccgcgac ggacgatgct cagggcgcgg
     3181 accaggtccc gggtggtca
//
LOCUS       DASYFY010000306         3458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_968380, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000306 DASYFY010000000
VERSION     DASYFY010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3458
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968380"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..952
                     /locus_tag="VGN19_06250"
     CDS             <1..952
                     /locus_tag="VGN19_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7195521.1"
                     /translation="GTSATAYGLACMELEAGDSGVRSLVSVQGSLAMYAIWKHGSEDQ
                     KQEWLPRMATGEAIGCFGLTEPDFGSNPAGMRTRARRDGDDWVLNGTKMWITNGSVAD
                     VAVVWAQTDDRIRGFVVPTDTPGFSAPEIKRKMSLRASVTSELVLDEVRLPASAMLPG
                     AAGLSGPLSCLTEARFGIVFGSLGAARDCLETTIAYARERQIFDRPLAGFQATQLKLA
                     DMTLELGKGMLLALHLGRLKDSVGLEAAQVSLGKLNNVRESLAIARECRTILGAAGIT
                     LEYPLMRHANNLESVLTYEGTSEVHQLVIGQALTGESAFR"
     gene            complement(975..1652)
                     /locus_tag="VGN19_06255"
     CDS             complement(975..1652)
                     /locus_tag="VGN19_06255"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7195522.1"
                     /translation="MIRVLVVDDDYHVAHAHALSVGRIPGFDVVGEAHTGAEAAELVA
                     STRPQLLLLDMYLPDFSGLDLVRKIAATGEPVPDFLLVTAARDIDSVRTAMQLGAFYY
                     LVKPFTFVALREQLESYRTWVDSVDRAPHADQKVIDALFSLRATPSRRAAATQTLQPT
                     MARVLEIVTSSPSPIGAAEVAEILGASRPTAQRYLATLVKKQLLDLDLTYGSTGRPEH
                     LYLPRRA"
     gene            complement(1649..3256)
                     /locus_tag="VGN19_06260"
     CDS             complement(1649..3256)
                     /locus_tag="VGN19_06260"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF028512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEV7195523.1"
                     /translation="MPRLGRTLAARILVAVLGIVVVTMAVGFTLFMRLTSQTADAHAI
                     EQAASIASTLGRDPTVAAGVLDGDPGNLLPRLGAQVRADTKASYVVIIDQSGIRHSHP
                     NPALIGRHIEEPVVALDGQVHTGIDAGSLGRSANARAPIFDAAGHSVGEVSVGILESE
                     VSVRLNAELLDLTLYTAIALALGVAASLLLARAIKRVTFGVEPAEIVALMQEREAMLH
                     GVREGVLAVDAKGAINVLNDEARRLLDLPTARLGQPVEEVLPPGRLQRIVTGEITGSD
                     LVAVTDEHLLVLNRMPVCVLGRNTGWVVTIRDRTELEGLLRQLDSMEGLSTALRAQEH
                     EFSNRLHVLSVLLELGEVEEATRYSSELQAETAMASEEIRARIGAPVVAAILLAKATV
                     AAERDVVVQLDPASRIEADQVADLTLVTVLGNLVDNAVDAVADDPTTVGLTPRGTVEV
                     SVRCVDGELRLWVADTGPGIPPDRIEDVFVDGYSTKEPRGAMRRGVGLALVHRLVTRA
                     GGTIVASSPGGARFDVTLPLRVREGAS"
BASE COUNT          531 a         1195 c         1221 g          511 t
ORIGIN      
        1 gggcaccagc gccacggcat acgggctggc ctgcatggag ctggaggcgg gcgactcagg
       61 cgtgcgctcc ctggtctcgg tccaggggtc gctggccatg tacgcgatct ggaaacacgg
      121 cagcgaggac cagaagcagg agtggctgcc acggatggcc accggcgagg ccatcggctg
      181 cttcgggctc accgagccgg acttcggctc caacccggcc gggatgcgca cccgcgcccg
      241 tcgcgacggg gacgactggg tgctcaacgg caccaagatg tggatcacca acggctccgt
      301 cgccgatgtc gcggtcgtgt gggctcagac cgacgaccgt atccgcgggt tcgtcgtccc
      361 gaccgacacg cctgggttct cggcccccga gatcaaacgc aagatgtcgc tgcgggcctc
      421 ggtcacctcc gagctggtgc tggacgaggt ccgccttccg gccagcgcga tgcttcccgg
      481 cgccgcgggg ctctccggcc cgctgtcctg cctgaccgag gcgcggttcg gcatcgtgtt
      541 cgggtcgctg ggtgcggcgc gagactgcct ggagacgacc atcgcgtatg cgcgggagcg
      601 gcagatcttc gaccgtcccc ttgcggggtt ccaggccacc cagctcaagc tggcggacat
      661 gacgctcgag ctcggcaagg ggatgctgct ggccctgcac ctcggccggc tcaaggactc
      721 cgtcggcctc gaggcggctc aggtcagcct cggcaagctc aacaacgtgc gggagtcgct
      781 ggccatcgcc cgagagtgcc gcaccattct cggcgccgcc ggaatcaccc tcgagtaccc
      841 gctgatgcgg cacgccaaca acctcgagtc ggtcctgacg tacgagggaa cctcggaggt
      901 gcaccagctg gtcatcgggc aggcgctgac cggggagtcg gccttccgct gagcgagtcg
      961 ctcaggcggg tcgctcaggc gcgccgcggc aggtagaggt gttccgggcg accggtcgag
     1021 ccgtaggtga ggtcgaggtc gagcagctgc ttcttcacca gggtggccag gtaccgctga
     1081 gcggtcgggc ggctcgcgcc gaggatctcg gcaacctctg ccgccccgat cggagagggt
     1141 gacgaggtca cgatctcgag cacccgggcc atggtcggct gcagggtctg ggtcgccgcc
     1201 gcccggcgcg atggcgtggc ccgcaggctg aagagcgcgt cgatgacctt ctggtcggcg
     1261 tgcggggccc ggtccacact gtcgacccag gtgcggtacg actccagctg ctcgcgcagc
     1321 gcgacgaacg tgaacggttt gacgaggtag tagaaggcgc cgagctgcat cgcggtccgc
     1381 accgaatcga tgtcgcgggc cgccgtcacc agcaagaagt cgggcaccgg ctcaccggtg
     1441 gccgcgatct tgcggacgag gtcgagcccg ctgaagtccg gcaggtacat gtccagcaac
     1501 aacagctgcg gccgcgtgga cgcgaccagc tccgccgcct ctgcgcccgt gtgggcctcg
     1561 ccgacgacgt cgaacccggg gatgcggccg acgctcaacg cgtgcgcgtg ggcgacgtgg
     1621 tagtcgtcgt cgacgaccag gacgcggatc atgaggctcc ctctcggacg cgcaggggga
     1681 gcgtgacgtc gaaccgcgcg cctccgggcg agctcgccac gatcgtgccg ccggcccgcg
     1741 tgacgagccg gtggacgagg gccagtccca cgccgcgccg catggccccg cgcggttcct
     1801 tggtggagta gccgtccacg aacacatcct cgatccgatc gggcggtatg ccgggtccgg
     1861 tgtccgcgac ccagaggcgg agctcgccgt cgacgcacct cacggatacc tccacagtgc
     1921 cgcgcggcgt caggccaacc gtggtcgggt cgtcggccac cgcgtccacc gcgttgtcga
     1981 cgaggttgcc cagcacggtg accagggtca ggtcggcaac ctggtcggcc tcgatccggc
     2041 tcgccgggtc gagctgcacg acgacgtcgc gctcggcggc gacagtggcc ttggcgagca
     2101 ggatcgccgc cacgaccggg gccccgatcc tggcgcggat ctcctcgctg gccatggccg
     2161 tttcggcctg gagctcgctg ctgtagcggg tcgcctcctc cacctcgccc agctcgagca
     2221 gcacggacag gacgtgaagg cggttggaga actcgtgctc ctgggcgcga agagccgtcg
     2281 acaggccttc catggagtcc agctggcgca ggagtccctc gagctcggtc cggtcgcgga
     2341 tggtcaccac ccacccggtg ttgcgtccca agacgcagac aggcatgcgg ttcaggacga
     2401 gcaagtgctc gtcggtcacc gccacgaggt ccgacccggt gatctcgccg gtcacgatcc
     2461 gctgcaggcg tcccggcggc aggacctcct cgacgggctg cccgaggcgc gcggtcggca
     2521 ggtcgagcag gcgacgcgcc tcgtcgttga ggacgttgat ggcgcccttg gcgtcgaccg
     2581 ccagcacccc ctcgcggacg ccgtgcagca tcgcctcgcg ttcctgcatc agcgccacga
     2641 tctctgccgg ctcgacgccg aaggtgaccc gcttgatcgc gcgcgccaag agcagcgagg
     2701 cagccacccc cagggcaagc gcgatggccg tgtagagcgt caagtcgagc agctcggcgt
     2761 tcagccgcac gctgacctct gactccagga tgccgacgga cacctcgccg accgaatggc
     2821 cggcggcgtc gaagatcgga gcgcgggcat tggctgagcg tccgaggctg ccagcgtcga
     2881 tcccggtgtg cacctgaccg tccagggcca ccaccggctc ctcgatatgc cgtccgatca
     2941 gtgcggggtt ggggtgggag tgacggatgc cgctctggtc gatgatcacg acgtacgacg
     3001 ccttggtgtc cgcacggacc tgcgcgccga ggcgggggag caggttgccg gggtcgccgt
     3061 ccagcacccc ggcggcgacg gtcgggtcgc ggcccagggt ggaggcgatg ctcgcggcct
     3121 gctcgatggc gtgggcgtct gcggtctggc tggtcagccg catgaagagc gtgaagccga
     3181 ccgccatggt gaccaccacg atccccagca ccgccaccag gatgcgtgcc gccagtgtcc
     3241 ggcccagtcg cggcatacct ctcctcgtct cgcacccact ggacagtcat cgtcacgcag
     3301 gagggtgccc tcaacggcac cgcttccagc atggctgaac agattgcaca aaaccatcgg
     3361 taacgcggct atcggaccca acgatcacaa gcgttccgcc cagggcggcg ctgctcctac
     3421 cgtgacgcaa ctcaacgagg agagaggttc aggccaat
//
LOCUS       DASYFY010000307         4371 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_232409, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000307 DASYFY010000000
VERSION     DASYFY010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4371
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232409"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..2098
                     /gene="uvrC"
                     /locus_tag="VGN19_06265"
     CDS             116..2098
                     /gene="uvrC"
                     /locus_tag="VGN19_06265"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEV7195524.1"
                     /translation="MPDPSTYRPAPGEIPVDAGVYRFRDTAGRVIYVGKAKSLRPRLS
                     SYFQDVRALHPRTATMVTTAASVEWTVVANEVEALQLEYSWIKEFDPRFNVKYRDDKS
                     YPYLAVTMGDEFPRAQVMRGAKRKGTRYYGPYAHAWAIRETLDQLLRVFPVRTCSSGV
                     FKRAGQVGRPCLLGYIDKCSAPCVGRVSAQEHRAIAEDFCDFMAGNTTRFVKRLETQM
                     KEASASLEFEQAARLRDDLVALGKALEKSAIVFADATDADVFALADDELEVAVQVFHV
                     RGGRVRGQRGWVAEKDDESLPEIVGHLLQQVYGGESGEGVPREVLVPVRPEDPETVAT
                     WLSALRGSAVDLRVPRRGDKKTLMETVHRNAQQSLARHKLARAGDLTARSQALQELQE
                     SLELADAPLRVECYDISHIQGSQVVGSMVVFEDGLARKSEYRRFIIRGAEVDDTAAMD
                     EVLTRRFQRYLEERDESSDVELAPDPEAGPERIDPDTGKPKKFAYPPNLVVVDGGLPQ
                     VNAAHAALARLGIDDVAVVGLAKRLEEVWVPGQEYPVILPRTSEGLYLLQRVRDEAHR
                     FAITFHRQRRSKAMTASALDRVPGLGEQRRKALLREFGSVKKIRVATIEELQGVVGIG
                     PALAATIAAELAQEGPATPAVNLMTGEIIDEDGAGS"
     gene            2176..3012
                     /gene="rapZ"
                     /locus_tag="VGN19_06270"
     CDS             2176..3012
                     /gene="rapZ"
                     /locus_tag="VGN19_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEV7195525.1"
                     /translation="MSGAGRSTTANVLEDSGWYVVDNLPPHLLVDLADLASQAARKDE
                     PPKLAAVVDVRARGFFDHLQTAVDALRAKGWHPNLVFLDATDEAIVRRFESVRRPHPL
                     QGEGRLLDGIARERVMLADLRAGADVVIDTSGLNVHQLAKKVHPVFAGERGPRVRIAV
                     MSFGFKYGVPLDADFVFDMRFLPNPYWIPELRGFTGQDPAVADYVMGQQGAPEFVDRV
                     VALMDPVTAGYVREGRRYVTLAVGCTGGKHRSVAVAEALRTRLATGDVATFVVHRDLG
                     RE"
     gene            3009..3944
                     /gene="yvcK"
                     /locus_tag="VGN19_06275"
     CDS             3009..3944
                     /gene="yvcK"
                     /locus_tag="VGN19_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HEV7195526.1"
                     /translation="MTGPAVVALGGGHGLAASLGALKLVCDDITAVVTVADNGGSSGR
                     LRDEFDVLPPGDLRMALTALCDDTEWGHTWRDVLQHRFRGDGPLGGHALGNLLIVALW
                     DVQRQAVTGLDLVGNLLNARGRVLPMAAVPLEITAQVQGLDPERPDEVTVVRGQVAVA
                     TTKGTVRSIALEPADPPAPAETVEAVRAADWVVLGPGSWFTSVMPHLMVPALRDALHD
                     TSARRLLTLNLEHSGETDGISAASQVEALADHAPRLRLDVVLADPSAVDDIEALRVAA
                     SRLGADVMLAQVAKRGDPGHHDTLRLAAAYRDIFG"
     gene            4020..>4371
                     /gene="whiA"
                     /locus_tag="VGN19_06280"
     CDS             4020..>4371
                     /gene="whiA"
                     /locus_tag="VGN19_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012866997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0043937 - regulation of sporulation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEV7195527.1"
                     /translation="MAMTARVKDELSRLDVTKPCCRKSEVAATLRFAGGLHIVGGRIV
                     VEAELDTAIAARRLRHNISELYGHPCEVLVLAAGGLRKGSRYVVRVVQDGEALARQTG
                     LIDGRGRPVRGLPPK"
BASE COUNT          682 a         1507 c         1537 g          645 t
ORIGIN      
        1 ccagccgttg ccagagaaga cggtgaccgt cagcgggaac ggcatcacca tcacctgaca
       61 gaccgaggcg tatgccgcca cgcgcaccgt cggtgcgcct ccatagagtg gagatgtgcc
      121 tgacccctcg acctatcgcc ccgctccggg ggagatcccg gtggacgcgg gggtgtaccg
      181 ctttcgggac acggcggggc gtgtcatcta cgtgggcaag gcgaagtcgc tacgcccgcg
      241 gctgtcctcc tacttccagg acgtacgggc gctccatccg cggaccgcga cgatggtcac
      301 caccgccgcc agcgtggagt ggacggtggt cgccaacgag gtcgaggccc tccagctcga
      361 gtactcctgg atcaaggagt tcgacccccg gttcaacgtc aaatatcgcg acgacaagtc
      421 ctacccgtac ctggccgtga ccatgggcga cgagttcccc cgcgcccagg tgatgcgcgg
      481 cgccaagcgc aagggcaccc ggtactacgg gccttacgcc cacgcctggg ccatccgcga
      541 gacgctcgac cagctcctgc gggtctttcc ggtccggacc tgctcctcag gggtcttcaa
      601 gcgcgccggg caggtgggtc gcccctgcct gctggggtac atcgacaagt gctccgcacc
      661 gtgcgtcggg cgggtcagcg cgcaggagca ccgggccatc gccgaagact tctgcgactt
      721 catggccggc aacactaccc ggttcgtcaa gcgcctagag acccagatga aggaagcctc
      781 ggcctccttg gagttcgagc aggcggcgcg cctgcgcgac gacctcgtgg ccctcggcaa
      841 agccctggag aagtcggcga tcgtcttcgc cgacgccacg gacgccgacg tcttcgcgct
      901 cgccgacgac gagctcgagg tggccgtcca ggtcttccac gtgcgcggcg gccgggtccg
      961 gggccaacgc ggctgggtgg ccgagaagga cgacgagtcg ctgcccgaga tcgtgggtca
     1021 tcttctccaa caggtctacg gcggagagtc gggggagggc gtccctcgtg aggtcctggt
     1081 ccccgtgcgt cccgaggacc ccgagacggt ggcgacgtgg ctcagcgccc tgcgtggctc
     1141 agctgtcgac ctgagggtgc cccgccgggg cgacaagaag accctgatgg agacggtcca
     1201 ccgcaacgcc caacagtccc tggcgcggca caagctggcc agggcggggg acctcaccgc
     1261 ccgcagccag gccctgcagg agctccagga gtcactcgag ctcgccgatg cgccgctgcg
     1321 ggtcgagtgc tacgacatca gccatatcca gggttcccag gtggtcggct cgatggtcgt
     1381 cttcgaggac ggactggccc ggaagtcgga gtaccggcgc ttcatcatcc gcggagcgga
     1441 ggtggacgac accgcggcca tggacgaggt gctcacccga cggttccagc ggtacctcga
     1501 ggagcgcgac gagtcctcgg acgtcgagct ggccccggac cccgaggctg gacccgagcg
     1561 catcgacccg gacaccggga agccgaagaa gttcgcctat ccgccgaacc tggtcgtggt
     1621 cgacggtggc ctgccgcagg tcaacgccgc gcacgcggcg ctggcgcgac tggggatcga
     1681 cgacgttgcc gtggtcggcc tggccaaacg gctcgaggag gtctgggtgc ccggtcagga
     1741 gtacccagtg atcctgccgc gcaccagcga gggcctgtat ctcctgcaac gggttcgcga
     1801 cgaggcgcac cgcttcgcga tcacgttcca ccggcagcgg cgctccaagg cgatgaccgc
     1861 ctcggctctc gaccgcgtcc ctggtctggg cgagcagcga cgcaaggcgc tgctgcgcga
     1921 gttcggctcc gtgaagaaga tccgggtcgc caccatcgag gagcttcagg gtgtcgtggg
     1981 catcgggcct gcgctcgcgg ccaccattgc ggcagagttg gctcaagagg gcccggccac
     2041 accggccgtg aacctcatga ccggcgagat catcgacgag gacggagcag ggtcgtgacc
     2101 accacgcccg agcagcgaga catcgacgac accgttcgtg ctgacggggt cggcgagctc
     2161 gtgatcgtca ccggcatgag cggtgccgga cggtccacca cggccaacgt cctggaggac
     2221 tcggggtggt acgtcgtcga caacctgccc ccgcacctgt tggtcgacct cgccgacctg
     2281 gccagccagg ccgcccgcaa ggacgaaccg cccaagctcg ccgctgtcgt ggacgtgcgg
     2341 gcgcgtggct tcttcgacca cctgcagacc gccgtggacg cgctccgcgc caagggatgg
     2401 catcccaacc tcgtcttcct ggacgccacc gacgaggcga tcgtgcgccg cttcgagtcc
     2461 gtgcgtcggc cccatccgct gcaaggcgag gggcggctgc tggacggcat cgcccgcgaa
     2521 cgggtcatgc tggcggacct gcgcgccggg gctgacgtgg tcatcgacac ctccgggctg
     2581 aacgtccacc agctggccaa gaaggtgcac ccggtctttg ccggcgaacg tggcccgcgg
     2641 gtccggatcg cggtgatgtc cttcggcttc aagtacggcg tgccgctgga tgccgacttc
     2701 gtcttcgaca tgcgcttcct gcccaacccc tactggatcc cggagctgcg tggcttcacg
     2761 gggcaggacc cggcggtcgc cgactacgtc atgggccaac agggggctcc cgagttcgtc
     2821 gatcgcgtgg tcgcactgat ggatccagtc accgcgggct acgtccgtga ggggcgccgg
     2881 tacgtgacgc tggccgtcgg atgcacgggg ggcaagcatc gctccgtcgc ggtggctgag
     2941 gcgctacgaa cgcggctggc gaccggcgac gtcgcgacct tcgtcgtcca tcgagacctg
     3001 gggcgagagt gaccggcccc gcggtcgtcg ccctgggcgg cggccacggc ctggccgcct
     3061 ccctcggagc cctcaagctg gtctgtgacg acatcaccgc cgtcgtcacc gtggccgaca
     3121 acggcggctc ctcagggcga ctgcgcgacg agttcgacgt cctcccaccc ggggacctga
     3181 ggatggcgct cacggcgctg tgcgacgaca ccgagtgggg tcacacctgg cgcgatgtgc
     3241 tgcaacaccg gttccggggc gatggacccc tcggtggcca cgccttgggc aacctgctga
     3301 tcgtggccct ctgggacgtc cagcggcagg cggtgaccgg actggacctc gtgggcaacc
     3361 tgctcaacgc ccgcggccgg gtgctcccga tggcggccgt gccgctcgag atcaccgccc
     3421 aggttcaggg actcgacccc gagcgtccgg acgaggtgac cgtggtgcgg ggacaggtcg
     3481 ccgtagccac gaccaaaggc accgtccgca gcatcgccct cgagccggcg gacccgcccg
     3541 ccccggcgga gacggtcgag gcggtacggg cggccgactg ggtggtgctc ggtccagggt
     3601 cgtggttcac ctcggtcatg cctcatctga tggtgccggc actacgggac gccctgcacg
     3661 acacctcggc gcggcggttg ctgaccctca acctggagca ttccggcgag acggacggca
     3721 tcagcgcggc cagccaggtc gaggcattgg ccgaccatgc gccgcgcctg cgtctcgacg
     3781 tggtcctggc cgaccccagc gcggtggacg acatcgaggc gctccgcgtg gcggcgtccc
     3841 ggctgggggc ggacgtcatg ctcgcccaag tggccaaacg gggagacccc gggcaccatg
     3901 acacgctgag gcttgccgcg gcataccgtg acatcttcgg gtgagccgcg cggacgtcca
     3961 gggaagcaac cgcgcggtcg ccccaccgaa gaacaccagt gagatggcag gatgacggca
     4021 tggcgatgac ggcacgggtc aaggacgagc tgagcagact cgacgtcacc aaaccgtgtt
     4081 gccgcaagtc cgaggtggcc gccaccctgc ggtttgccgg tggtctgcac atcgtgggtg
     4141 gacgaatcgt cgtcgaggcc gagctggaca cggccatcgc cgcgcgccgt ctgcggcaca
     4201 acatctccga gctctatggc cacccgtgcg aagttctcgt tctggccgcg ggtgggctgc
     4261 gtaagggctc gcggtacgtc gtgcgggtgg ttcaggacgg tgaggccctg gcacgccaga
     4321 ccggtctgat cgacggccgg ggccggccgg tccgaggact gccccccaag g
//
LOCUS       DASYFY010000308         5507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_548330, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000308 DASYFY010000000
VERSION     DASYFY010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548330"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            86..1387
                     /locus_tag="VGN19_06285"
     CDS             86..1387
                     /locus_tag="VGN19_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurT ligase domain-containing protein"
                     /protein_id="HEV7195528.1"
                     /translation="MLRTTAAVVAGKAARAASRLRGGGSALPGLVAERVDPGFLAHAL
                     ADVRGGIVVVSGTNGKTTTTKMLVAVLRAHGRTVFTNPTGSNFTRGVISSMLGELPLA
                     GRLRADMAVLELDEAHALKFAKSVRPTHSLLLNVARDQLDRFAEIDHTAQLLATLAEQ
                     TTSGVVLNLDDSFVSRIRDRVSEGVQVRYFGVDGSIADRLPELQEQDVRFDDGFVPPV
                     AGPDDGLLKPSDDRTFEVVFGDATVGPLELQQRGLAAMINATAATATARTLLGDGFDL
                     QVAAAALRAVTPPFGRGEVVMVDGEPLELVLVKNPAGFTVALGTYGSTPVATMIAIND
                     NYADGRDVSWLYDVSFESLRERGVAVTSGVRGYDMALRLQYDDVSVDDVQPDLDRALD
                     LFLVRHAQEPKRIFCTYTAMMALRRTLAARYDLPDIGEEAS"
     gene            1384..2115
                     /locus_tag="VGN19_06290"
     CDS             1384..2115
                     /locus_tag="VGN19_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017832258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CobB"
                     /protein_id="HEV7195529.1"
                     /translation="MTKGEIHLVHLYPREMSIYGDLGNTRCLATRIRRHGYTPVVHQH
                     DPGSPFPDQAHLVVGGGGQDSGQVRVEADLERIADRLRSLADAGTPMLMICGMYQLFG
                     NAFITVEGARLPGLGILDVTTQGNAKRMIGPVVLDTEFGDIVGYENHSGSTTLGAGQA
                     PFGRVRAGLGNNGSDGTEGARTGNIVGSYLHGPILPANPALADALIALAAEKATGLPF
                     EPAEQEDALADEARTRQVRRLVKRG"
     gene            complement(2124..2861)
                     /locus_tag="VGN19_06295"
     CDS             complement(2124..2861)
                     /locus_tag="VGN19_06295"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEV7195530.1"
                     /translation="MITERQSLVVGAAAVTPLMACGVLTTLRSSVPNASAALLLVVIV
                     VAAAATGIRAAGLMAALSSALWFDVFLTQPRGQLAITDPADLQATILLITVGVAVSEL
                     ALWGRRQQARASRTTGYLAGLVDTATTATVPSTDLAELTTRVCRQLTEVLGLDGCRFV
                     TSQTAPFAEPQLTVEGMVVRRGRVVDVTRDGLPVDDETVLPVRHNGRVVGQFLLTAAT
                     RVVRPSPDQLRVAVLLADQVGSALTRA"
     gene            3142..5079
                     /locus_tag="VGN19_06300"
     CDS             3142..5079
                     /locus_tag="VGN19_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006946848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HEV7195531.1"
                     /translation="MTTDERSAPPAASAEPEQPQAHGQGWLVLALGSLGVVFGDIGTS
                     PLYSIQTVFALDGGIVKSTPSDVFGVISMVFWSITAVVSAKYVILILRADNDGEGGVM
                     ALAALARRTVRPGGRRFRLVMILGVVGASLFYGDSVITPAISVMSAIEGLAIPAPGLA
                     HLEVPVGAVIITVLFMVQRYGTHVVGRFFGPIMVLWFFVLGVTGAVQIGHDPGILRSL
                     SPTYAVLFVVDHPFIAFVAMGAVVLSITGAEALYADMGHFGRAPIRRAWFALVFPALT
                     LNYLGQGSLILQKPSSVSNPFFLLTPGWMQLPMVVLATAATIIASQAVISGAYSVSRQ
                     AERLGYLPKLTVRHTSQHEGGQIYAPAINWALYAGVVLLLLLFQSSGKLATAYGLAVT
                     GTFLLTTTLVLIYAESAWNWSRAKLLAVGIPLAGLELTYLGANLTKVAHGGWLPLVIA
                     ATVATLMLTWQKGRVLVTERRTSMEGSLAEFIAGLHPDTVTVVPGTAVFLHPDDGTTP
                     LALRENVAYNHVIHEHVFIVTTLSENVPRVSEDERCVCEPLDSPLATITRVKLRFGFQ
                     DEQDVPAALHSAKRQGLLIEPDEAFYFLSRITVHRGKLPGLSTWRKRLFIGLAHNAAN
                     PSEYFKLPEANTVIMGAQVEL"
     gene            5279..>5507
                     /locus_tag="VGN19_06305"
     CDS             5279..>5507
                     /locus_tag="VGN19_06305"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEV7195532.1"
                     /translation="MSDTVSGLLTIGLLVLALALVHVPLGDYLASTFTSEKHWRVERF
                     VYRIVGVRPDSEQRWTAYTASVLGISAVSTVG"
BASE COUNT          836 a         1928 c         1867 g          876 t
ORIGIN      
        1 aacctctgca agcagaggtt agggaaaggc cgccacggta tgccgcgtgc ctgccgaagc
       61 cgcgcgggcg gttagggttt gtggggtgtt gaggacgacg gcggccgtgg tcgcaggcaa
      121 ggcggcccga gctgcgtcgc gactgcgagg cgggggatcc gcactgcctg ggctggtcgc
      181 cgagcgggtc gaccccgggt tcctcgcgca cgcgttggcg gacgtgcgcg gcggcatcgt
      241 cgtcgtgagc ggcaccaacg gcaagacgac caccaccaag atgctcgtcg ccgtgctacg
      301 ggcccacggg cgcaccgtct tcaccaaccc cacgggcagc aacttcaccc ggggggtcat
      361 ctcctcgatg ctcggcgagc tcccgctggc tggcaggctg cgggccgaca tggccgtcct
      421 ggagctcgac gaggcgcacg cgctgaagtt cgcgaaatca gtccggccaa cgcattcgtt
      481 gctgctcaac gttgctcgcg accagctcga ccgcttcgcc gagatcgacc acaccgccca
      541 gctgctggcc accctcgccg agcagaccac gtccggagtg gtcctcaacc tcgacgactc
      601 gttcgtctcg aggatccgcg accgggtcag cgagggtgtc caggtgcggt acttcggcgt
      661 ggacggctcg atcgccgacc ggctccccga gctgcaggag caggacgtcc ggttcgacga
      721 cggcttcgtc ccccctgtcg ccggcccgga cgacggcctg ctgaagccgt ccgacgaccg
      781 gaccttcgaa gtggtgttcg gtgacgcgac ggtcggtcca ctggagctgc aacagcgcgg
      841 cctggcggcg atgatcaacg cgaccgccgc caccgccacc gcccgtaccc tgctcggaga
      901 cggcttcgac ctccaggtgg ccgccgcggc gctgcgtgcg gtgaccccgc cgttcggtcg
      961 gggtgaggtg gtcatggttg acggcgagcc gctcgagctc gtgctcgtca agaacccggc
     1021 aggcttcacg gtggccctgg gcacgtatgg gtcgaccccc gtcgccacca tgatcgccat
     1081 caacgacaac tacgccgacg gccgggacgt ctcgtggctg tatgacgtca gcttcgagag
     1141 cctgcgcgag cgaggggtcg ctgtcacgag cggggtgcgg ggctatgaca tggcgctgcg
     1201 actgcagtac gacgacgtgt cggtcgacga cgtgcagccc gacctcgacc gggcgctcga
     1261 cctcttcctg gtccggcacg cacaggagcc caagcggatc ttctgcacgt acacagccat
     1321 gatggcgctg cgtcgcacgc tcgccgcgcg gtacgacctg cccgacatcg gcgaggaggc
     1381 gtcatgacca agggcgagat ccacctggtc cacctgtacc cccgtgagat gagcatctac
     1441 ggcgacctgg gcaacacccg ctgcctggcg acccggatcc gtcggcacgg ctataccccg
     1501 gtcgtgcacc agcacgaccc gggcagcccg ttcccggacc aagcccacct cgtggtggga
     1561 ggcggcggac aggactccgg acaggtgcgc gtcgaggcag atctggagcg gatcgccgat
     1621 cggctgcgct cgctggctga cgccggaacg ccgatgctca tgatctgcgg gatgtaccag
     1681 ctcttcggga acgcgttcat cacggtcgag ggcgcccggc tgcccgggct cggcatcctc
     1741 gacgtgacga cgcaggggaa cgccaagcgg atgatcggac cggtcgtcct cgacaccgag
     1801 ttcggcgaca tcgtgggcta cgagaaccat tcgggctcaa cgacgttggg tgccggccag
     1861 gcgcccttcg ggagggtgcg cgccggtctg ggcaacaacg gcagcgacgg caccgagggc
     1921 gcgcggaccg ggaacattgt cgggtcctat ctccacgggc cgatcctgcc cgccaacccg
     1981 gccctagccg acgccctgat cgccctggcg gcagagaagg ccaccgggtt gccgttcgag
     2041 cccgccgagc aggaagacgc cctggccgac gaggcgcgca ctcgtcaggt gcggcggctg
     2101 gtcaagcgcg gttgaggtcg gcttcacgct cgggtcagtg ccgagccgac ctggtctgcg
     2161 agcaggaccg caacccgcag ctggtcgggg ctggggcgca ccacgcgcgt cgccgccgtg
     2221 agcaagaact gcccgaccac ccggccgttg tgccggaccg gcagcacggt ctcgtcgtcc
     2281 accggcaacc cgtcgcgggt cacatcgacc acccgtccgc gccgcaccac catcccctcc
     2341 acggtgagct gcggttcggc gaagggagcg gtctgtgagg tcacgaaccg gcagccgtcg
     2401 agcccgagga cctcggtgag ctgccggcat acccgagtgg tgagctccgc gagatccgtg
     2461 ctcggcacgg tcgccgtggt ggcagtgtcg accaggcctg caaggtagcc cgtcgtgcga
     2521 ctggcccgag cctgctggcg tcggccccac agcgcgagct cgctgacggc cacgccgacg
     2581 gtgatgagca ggatcgtggc ctggaggtcg gccgggtcgg tgatggcgag ctgaccccgc
     2641 ggctgggtga ggaacacgtc gaaccacagg gcgctcgaca gcgccgccat gagtccggcc
     2701 gcccggatac cggtggccgc ggcggcaacc acgatgacga ccagcagcag tgccgccgag
     2761 gcgttcggca ccgagctccg cagcgtggtc agcaccccgc aggccatgag tggcgtgacg
     2821 gcagcggcgc cgacgaccag ggactgccgc tccgtgatca ccctctgaat gtccataccc
     2881 tcatcaggca gccgccttga cccacgggtc aagcgtcttg acgcgatctg tacggcctgg
     2941 gggcccgaac gacggcctgg gggcccgaac gacggccggg gggcccgaac gacggccggg
     3001 gggtccggac gacggcccgg gggtccgggg gccgaacagc tgctggtcgc tgcccgcgac
     3061 cgccagacct taacgggatc ttgacgggtc cgggtcctga gcggtttggg gcgcctgtat
     3121 gccgcggata tcgtggggct agtgaccact gacgaacgct cggccccgcc tgctgcctcg
     3181 gcagaacccg agcagccgca ggcccacggc caaggctggc tggtgctggc gctcggctcg
     3241 ctgggcgtcg tcttcggcga catcggcacc agcccgctgt actcgatcca gaccgtcttc
     3301 gccctcgatg gcgggatcgt gaagtcgacg ccgagcgatg tcttcggcgt catctccatg
     3361 gtcttctggt cgatcaccgc ggtcgtctcg gccaagtacg tcattctcat cctcagagcg
     3421 gacaacgacg gtgagggtgg ggtcatggcg ctcgcagctc tggcccggcg caccgtgcgc
     3481 cctggcggga gacgcttccg gctggtgatg atcctggggg tcgtgggggc ctcgctcttc
     3541 tacggcgaca gcgtcatcac gcccgccatc tcggtcatgt cggcgatcga gggtctggcc
     3601 attcccgcgc ccgggctggc gcacctcgag gtgcctgtcg gtgcggtcat catcaccgtg
     3661 ctgttcatgg tccagcgata tggcacccac gtggtggggc gcttcttcgg accgatcatg
     3721 gtcctgtggt tcttcgtgct cggcgtgacg ggtgcggtcc agatcggcca cgaccccggc
     3781 atcctgcgca gcctctcacc gacctacgcc gtcctgttcg tggtggacca ccccttcatc
     3841 gccttcgtcg cgatgggcgc cgtcgtgctg tcgatcaccg gggcggaggc gttgtatgcc
     3901 gacatgggcc acttcggccg tgcgccgatc cgtcgcgcct ggttcgcgct ggtcttcccg
     3961 gcgctgacgc tgaactacct ggggcagggc tcgctcatcc tgcagaagcc cagctcggtg
     4021 tcgaacccgt tcttcctgct cacccccggc tggatgcagc tgcccatggt ggtgctcgcg
     4081 accgcggcca cgatcatcgc ctcgcaggcg gtcatctcgg gcgcctactc ggtatctcgg
     4141 caagccgaac ggctcggcta tctgcccaag ctcaccgtgc ggcatacctc tcagcacgag
     4201 ggtggccaga tctatgcccc ggccatcaac tgggccctgt atgccggagt ggtcctgctg
     4261 ctgctcctct tccagtcctc ggggaagctc gcgaccgcct acggcctggc ggtgacggga
     4321 accttcctgc tgaccaccac cttggtgctg atctacgccg agtccgcctg gaactggtcg
     4381 cgggccaagc tgctcgccgt cgggatcccg ctggccggcc tggagctcac ctacctcggc
     4441 gccaacctga ccaaggtcgc ccacggtggc tggctcccgc tggtcatcgc cgccaccgtg
     4501 gcgacgttga tgctcacctg gcagaagggc agggtcctgg tcaccgagcg acgcaccagc
     4561 atggagggct ccctcgccga gttcatcgcg ggcctgcacc cggacacggt caccgtcgtg
     4621 ccggggacgg ccgtcttcct gcatcccgac gacgggacga ccccgctggc gctgcgcgag
     4681 aatgtggcct acaaccacgt gatccacgag cacgtcttca tcgtcaccac gctgtccgag
     4741 aacgtccccc gcgtcagtga ggacgaacgg tgcgtctgcg agccactcga cagcccgctc
     4801 gccacgatca cccgggtcaa gctccgcttc ggtttccagg acgagcagga tgttccggcg
     4861 gcgctgcaca gcgccaagcg tcaggggctg ctcatcgagc ccgacgaggc cttctacttc
     4921 ctgtcccgga tcaccgtgca ccgcggcaag cttccggggc tgtcgacctg gcgcaagcgg
     4981 ctgttcatcg ggctggcgca caacgcggcc aaccccagcg agtacttcaa gctgcccgag
     5041 gcgaacaccg tgatcatggg cgctcaggtg gagctctagg ccgcagcggc ccagcggcgc
     5101 aaccgcgcaa cgggcatcag gaacgcatca acgctcgtca aggcaccgtc aataacgctg
     5161 atccgccccg cgggatggtc tgcactggat aggtgatcga aaacctcatc ggcggcctga
     5221 tcgccgcggc actgctggtc tacctgggct acgcgttcct gcgcccggac aagttctgat
     5281 gtccgacacc gtcagtgggc tgctcaccat cggcctcctc gtgctggccc tggcgctcgt
     5341 ccacgtgccg ctcggcgact acctggccag caccttcacg agcgaaaagc actggcgcgt
     5401 agaacgattc gtgtaccgca tcgtgggggt gcgcccggac agcgaacagc gctggacggc
     5461 atacaccgcc tcggtgttgg gcatctcggc ggtgagcacc gtcggac
//
LOCUS       DASYFY010000309         2412 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_968697, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000309 DASYFY010000000
VERSION     DASYFY010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968697"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..1287
                     /locus_tag="VGN19_06310"
     CDS             163..1287
                     /locus_tag="VGN19_06310"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEV7195533.1"
                     /translation="MPLLGWPLQTVSIVLLVGVTGATLLLWSEVPGRGLARLAQRAAL
                     LVGCQLAAVLLVAVAANNYGYFYGSWSDLFGTNTAQPVVTAGWPQGHLSRTLVVPAVT
                     VAHPTSWSPTSAASVRGKVESVRIHGVRSGLTTDTLVYLPPQYFQPAYAHYQFPAIEM
                     LTGYPGVTTSLVSRLHVPEVYLAELQHHRAIPMVVVMLRPTVAPPRDTECTDVPAGPQ
                     TLTYLGQDVPSAIDGLLRVRPIGWGAMGESTGGYCAVKLAMLHSDVFRAAVSMSGYYH
                     TLEDPTTGDLWGGSSVLRQLNSPEWLLEHQPPPPVSVLTSVGLAEGPAAVTDTHWFVS
                     LIRPPMTGSAIEVPGGGHNYANWSRILPRGFDWLSARLHP"
     gene            complement(1290..1982)
                     /locus_tag="VGN19_06315"
     CDS             complement(1290..1982)
                     /locus_tag="VGN19_06315"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEV7195534.1"
                     /translation="MPKPDTTPVVVVGLGDSVTAGSACGCTTFVGLYASMLHQRSGRS
                     VAAANLGEPGLTSTGLSAQLGDPQVRAQLAKATLVVLTIGANDLEPLISRWQAAGCDA
                     SCVEPATAAMGANLSIALSQVSAVVSPKTRVLVTNYWNVFEDGDVGEQDYGKAFHAWS
                     DSVTRSANAHICAAAAAAGDTCVDIYEPFEGAGDRNPTALLAGDGDHPNAAGHQLIAE
                     ALIQADPLAQES"
     gene            1966..2175
                     /locus_tag="VGN19_06320"
     CDS             1966..2175
                     /locus_tag="VGN19_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195535.1"
                     /translation="MSGFGMARAVPAEGRGVLGAAGALLALLLGCLAGAAVSMAVPQA
                     VIVVRRTTVAKGLASRLHGARTHED"
BASE COUNT          338 a          797 c          861 g          416 t
ORIGIN      
        1 gcgcggcggg gcacgcaccg catggcctgc tccgcgcgac tgggcgggcc catctgacca
       61 gtatgccgcc gggtggcgtt cgtgagagcg ctctcaggaa gcgctgggct ggttctcaag
      121 tggtgcgtga gaaactatgc cgactttggg aggaggtgcg tcgtgccgtt gcttggatgg
      181 ccgttgcaga ccgtcagcat cgtgctgttg gtgggggtga ccggggcgac cctgctgttg
      241 tggtccgaag tgccggggcg cgggttggcc cggctggccc aacgcgctgc cttgttggtc
      301 ggatgtcagc tggccgcagt gttgctggtt gctgtggcgg cgaacaacta cggctacttc
      361 tacggctcgt ggagtgacct gttcgggacg aacacggcac agcccgtcgt gaccgccggc
      421 tggccccagg gccatctcag caggaccctc gtggtgcccg cggtgaccgt ggcgcacccg
      481 acgagctggt cgcccacctc ggcagccagc gtgcgcggca aggtcgagtc ggtgcgcatc
      541 cacggagtac gcagcggtct gaccaccgac acgctggtct atctgcctcc ccagtacttc
      601 cagccggcgt atgcgcatta ccagttcccg gcgatcgaga tgttgacggg atacccaggg
      661 gtgaccacga gcctggtcag ccggctgcac gtgccggagg tgtatctcgc tgagctgcaa
      721 caccatcggg ctatcccgat ggtcgtcgtc atgctgcgcc cgactgtcgc tccgccgcga
      781 gacaccgagt gcaccgacgt gccggcaggc ccgcaaacat tgacctatct cggccaggat
      841 gtgccgtcgg ccatcgacgg actgctccgg gtgcgaccca tcggctgggg cgcgatgggg
      901 gagtcgacgg gtggctactg cgcggtcaag ctcgccatgc tgcactcgga tgtcttccgt
      961 gctgcggtgt cgatgtcggg gtactaccac acgctcgagg acccgacgac cggcgacctc
     1021 tggggcgggt cgtcagtgct gcgccagctc aacagcccgg agtggctctt ggagcatcaa
     1081 ccgccgcccc cggtctccgt gctcacctcg gtcggactgg ctgagggccc cgcagccgtg
     1141 accgacacgc actggttcgt ctccctgatc cggccgccga tgaccggctc ggccatcgag
     1201 gtcccaggtg gtgggcacaa ctacgccaac tggtctcgga tcctgccgag gggcttcgac
     1261 tggctctcgg cccgcctgca cccgtagcgc tagctctcct gggccagggg gtcggcctgg
     1321 atgagcgcct cggcgatcag ctgatggccc gccgcattcg ggtggtcgcc gtcccccgcg
     1381 agcaaagcag tggggttgcg gtcaccggcc ccttcgaagg gctcgtagat gtccacgcat
     1441 gtgtcgccag cggccgcggc ggccgcgcag atgtgcgcgt tggccgaccg ggtcacgctg
     1501 tcgctccagg cgtggaacgc cttgccgtag tcctgctcgc cgacgtcgcc gtcctcgaag
     1561 acgttccagt agttggtcac cagcacgcgg gtcttcggtg acacgaccgc gctgacctgg
     1621 ctcagggcga tcgacaggtt ggcgcccatg gccgcggtgg ccggctcgac gcagctcgcg
     1681 tcacacccgg cagcctgcca acggctgatg agcggctcga ggtcgttggc gccgatagtc
     1741 aggacgacca gggtcgcctt ggccagctgg gcgcgcacct gcgggtcgcc gagctgcgcc
     1801 gagagcccgg tgctggtgag tccgggctcg cccaggttgg cggccgcgac ggaccggccg
     1861 gagcgttggt gcagcatcga ggcatacagg cccacaaagg tcgtgcagcc acaggcgctg
     1921 ccggcggtga ccgagtcccc gagcccgacg acgacgacgg gggtcgtgtc cggcttcggc
     1981 atggctcgcg ctgtgccggc cgagggccgg ggcgtgctgg gtgcggccgg agcactgctg
     2041 gcgctgctgc tcggatgcct agccggggcg gcggtgagca tggcggttcc gcaggcggtc
     2101 atcgtggtga ggaggacgac cgtcgccaaa gggctcgcaa gtcgtctcca cggggcgcgc
     2161 actcacgaag attagcggcg attcttgcca tatggaggat tcgcacctgt gcaacagcta
     2221 tggatgtcgc cgtgcggggc gcgctctcgg tcgcctgtct gggcaccgcc gcaagcagga
     2281 ggttcttcgc tcgagagggt cccggttacc cttgacacat catggaccac actcccggcg
     2341 cgaccgtctt tcctgccctc gagccgttgc tcgagcaggt cagcaagccc atccagtacg
     2401 tcggcggcga gc
//
LOCUS       DASYFY010000310         2040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_758374, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000310 DASYFY010000000
VERSION     DASYFY010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_758374"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /gene="rsmG"
                     /locus_tag="VGN19_06325"
     CDS             complement(<1..659)
                     /gene="rsmG"
                     /locus_tag="VGN19_06325"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEV7195536.1"
                     /translation="MSSPQDTDGRGTGATGPAPVAASGLEAVESLQAPVAPPGAVAVF
                     GDRLEMAERFASLLADTGVSHGLIGPREVPILWERHILNCAVAHEAFPMGAEVVDVGS
                     GAGLPGLALAIVRPDLSLHLVEPMLRRTNWLSASIAGLGLENCTVHRGRAEEFRGRIE
                     VPFATARAVARIDKLARWTFPLLTDGGTLVALRGSQAEEELAAEGAVLRRLGMVSAAV
                     QT"
     gene            complement(688..1338)
                     /locus_tag="VGN19_06330"
     CDS             complement(688..1338)
                     /locus_tag="VGN19_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="R3H domain-containing nucleic acid-binding
                     protein"
                     /protein_id="HEV7195537.1"
                     /translation="MSEQHDTVVDEVPTNAEGVSDAETEGTGDPETEDTGDAQMEGTA
                     DADDDALGDGAPKRRAKVADLEREGEVAADFLETLLDIADLDGDIDVDVDGDRAAVSI
                     VDSEEGRVPRRLVGQDGKVLEALQELTRLAVQSATGERSRLMLDVAGHRAERRSALVT
                     IARQAIDEVRKTGQQTALEPMSAFERKVVHDEVLAAGLVSESDGVEPRRFVVVLPA"
     gene            complement(1353..>2040)
                     /gene="yidC"
                     /locus_tag="VGN19_06335"
     CDS             complement(1353..>2040)
                     /gene="yidC"
                     /locus_tag="VGN19_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0051205 - protein insertion into membrane
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEV7195538.1"
                     /translation="MPILLQSPFFFGLFRVLNGLQGMANGTKPTIGPITRDLAAQAEQ
                     STFFGAQLSDKFIGADTLTTKIVTIVLILLMSLTTFTTQRQLMRKNMPASALDNPFAR
                     QQKYLLYLMPVFFAISGVNFPIGVLLYWLTTNVWSMCQQFYVIRRMPAPGSPAEKALH
                     ERRAKRGKPVEAFTLKGLDAPQDDVPAKPQSGQRQQPSRKKKKKGSQATSTKEQSASP
                     IRESKPQTDN"
BASE COUNT          301 a          713 c          690 g          336 t
ORIGIN      
        1 gtctgcacag cggccgagac catccccagc cgacgcagga cggcgccttc cgcggcgagc
       61 tcctcctcgg cctgcgaacc tctgagggcc accagggtcc ccccgtcggt caggagggga
      121 aaggtccacc gcgcgagctt gtcgatgcgc gccaccgctc tggccgtggc aaagggcacc
      181 tctatgcgcc cgcgaaactc ctcggcgcgg ccccggtgga ccgtgcagtt ctccagaccc
      241 aggcccgcga tgctggcgct gagccagttc gtccggcgca gcatcggctc caccaggtgc
      301 agtgagaggt cggggcggac gatggcgagg gccagaccgg gcagccctgc ccccgaaccc
      361 acatcgacca cctccgcccc catcggaaag gcctcgtggg ccaccgcgca gttcaggatg
      421 tgccgctccc agaggatcgg cacctcgcgc gggccgatga ggccgtggga caccccggtg
      481 tcggccagca gcgacgcgaa ccgctctgcc atctcgagtc ggtccccgaa cacagcgacg
      541 gcccccggcg gggcgaccgg tgcctgcagg gattcgacag cctcgaggcc cgacgccgcg
      601 acgggcgcgg gtccggtggc tccggtcccg cgcccgtcgg tgtcctgggg gctgctcatg
      661 cggctggttt cacgtgaaac cgcgtcctca cgcaggaagc accacgacga aacgtcgcgg
      721 ctccacgccg tcggactccg acacgaggcc agctgcgagc acctcgtcgt gcacgacctt
      781 gcgctcaaag gcgctcatgg gctcgagcgc cgtctgctgt ccggtcttcc tgacctcgtc
      841 gatggcctgg cgggcgatcg tcacgagcgc ggatcggcgc tcggcgcggt ggccggcgac
      901 gtccagcatc aggcggctgc gctcgcccgt ggccgactgc accgcgagtc gcgtgagctc
      961 ctgcagtgcc tcgagcacct tgccgtcctg gcctacgagg cgccgcggca cgcggccctc
     1021 ctcggagtcc acgatcgaca ccgcagcacg gtcaccgtca acgtccacgt cgatgtcgcc
     1081 atcgaggtcg gcgatgtcca gcagtgtctc gaggaagtca gcggccacct caccctcacg
     1141 ctccaggtcg gccaccttgg cacgacgctt cggcgcgccg tcccccaggg cgtcgtcgtc
     1201 ggcgtcagcc gtgccctcca tctgcgcgtc gcccgtgtcc tcggtctccg ggtcgcccgt
     1261 gccctcggtc tccgcgtcgg acacgccctc agcgttcgtc gggacctcgt ccacgacggt
     1321 gtcgtgctgt tcgctcatcg gggtgatcac tctcagttgt cggtctgtgg cttggactca
     1381 cggatcgggg acgcactctg ttccttggtg ctggtcgcct gcgatccctt cttcttcttc
     1441 ttgcggctcg gctgctggcg ctgaccgctc tggggcttgg ccggcacgtc gtcctgggga
     1501 gcgtccagtc ccttcagggt gaacgcctcc accggcttgc cgcgcttggc ccgacgttcg
     1561 tgcaacgcct tctccgcggg ggacccaggc gccggcatcc gacggatcac atagaactgc
     1621 tggcacatcg accacacgtt ggtggtgagc cagtacaaca ggacaccgat cgggaagttc
     1681 acaccagaga tggcgaagaa gaccggcatc aggtagagca ggtacttctg ctggcgggcg
     1741 aacgggttgt ccagcgccga ggcaggcatg ttcttgcgca tcagctggcg ctgtgtcgtg
     1801 aacgtggtca gcgacatgag caggatcagc acgatcgtga cgatcttggt ggtgagggtg
     1861 tccgcgccga tgaacttgtc ggacagctgg gcgccgaaga aggtggactg ctcggcctgc
     1921 gcagcgaggt cgcgggtgat cggaccgatg gtcggcttgg tgccgttggc catgccctgg
     1981 aggccgttga gcacgcggaa caggccgaag aagaacggcg actggagcag gatcggcata
//
LOCUS       DASYFY010000311         2277 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1126057, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000311 DASYFY010000000
VERSION     DASYFY010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126057"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /locus_tag="VGN19_06340"
     CDS             complement(<1..1009)
                     /locus_tag="VGN19_06340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018772645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195539.1"
                     /translation="MTSHHGTHNDLHTEQGALRAEHPGRAKNPIIKVVDLAWLEFVKP
                     DLAASERFAHAFGFTTVSRTADELQLRGTDAGAPCVIVRRGPHSRYLGAAFRAAEPTD
                     VARIAGATRRDVERLPESIGGLTVDLTDPSGVLVRVVADTHELAPLPGQPTQVFNFGQ
                     DVRRVNATQRPHREPAKIQRLGHVVLQTSKYLQTLNWYLEHLGLIVSDFKYFEGQRDR
                     GPTMSFIRCDRGMTPTDHHTLAMMLGPSNRYVHSAYQVGDLDALAAGGEYLRQLGFQR
                     SWGIGRHIEGSQIFDYWRDPDGLLVEHFADGDLFDSTLEPGWSPMTASGLAQWGPPVT
                     KD"
     gene            1158..1820
                     /locus_tag="VGN19_06345"
     CDS             1158..1820
                     /locus_tag="VGN19_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018772646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195540.1"
                     /translation="MSNAPTPQVNRLDRRKARTRAALIRAAQTLIAEGRTNVPILEIT
                     QAADVGMGSFYNHFESKEQLFEAAVEDVMDGFGQLLDTLTADIKDPAEVFACSFRLTG
                     RLSRREPELSRVLLNNVLRLLSADSGLAPRARRDIAAAVEAGRFDVEDLDVAVTITAG
                     ALLALGQLLHDQPDRDVEETTDRLTEDLLRMLGVPRRQAQRICSLPLPDIDDVRGDAS
                     AG"
     gene            1992..>2277
                     /locus_tag="VGN19_06350"
     CDS             1992..>2277
                     /locus_tag="VGN19_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(3-hydroxyalkanoate) polymerase"
                     /protein_id="HEV7195541.1"
                     /translation="MSTVPTCSLTESAAPLDVLLVDAALGPVRRFLPDLSTAKWAVSL
                     ARRPDTTARRLGGLGAEAARVLTGASTVAPDRRDRRFTDVAWSENPLLKRL"
BASE COUNT          357 a          784 c          777 g          359 t
ORIGIN      
        1 agtccttcgt caccggcggc ccccactggg ccagcccgga agccgtcatc ggcgaccagc
       61 cgggctccag ggtggagtcg aacaggtcac cgtccgcgaa gtgctcgacc aggaggccgt
      121 cggggtcgcg ccagtagtcg aagatctggc tgccctcgat gtgacgaccg atcccccagg
      181 agcgctggaa gcccagctgc cgcaggtact ccccgcccgc ggccagcgcg tcgaggtctc
      241 cgacttggta tgccgagtgc acgtaccggt tgctggggcc gagcatcatg gccagagtgt
      301 ggtggtcggt gggagtcatg ccgcggtcac agcggatgaa gctcatggtc gggccgcgat
      361 cacgctgccc ctcgaagtac ttgaagtcgc tgacgatgag gccaaggtgc tccaggtacc
      421 agttcagggt ctggaggtac ttcgaggtct gcagcacgac gtggcccagc cgctggatct
      481 ttgcgggctc tcgatgcggg cgctgtgtgg cgttgacgcg ccgcacgtcc tgcccgaagt
      541 tgaacacctg cgtcggctgg cccggcaggg gtgcgagctc gtgggtgtcg gcgacgaccc
      601 ggaccagcac gccgctggga tcggtcaggt ccacggtgag cccgccgatg ctctccggca
      661 gcctctcgac gtctctccgg gttgcgccgg caatccgggc cacgtcggtg ggctccgcgg
      721 cccggaaggc cgcgccgagg tacctcgagt gcggtccacg gcgcacgatc acacacggcg
      781 cgccggcatc ggtgccgcgc agctgaagct catccgccgt ccggctcacg gtggtgaacc
      841 cgaacgcgtg cgcgaagcgc tccgaggcgg ccaggtcggg cttgacgaac tcgagccagg
      901 ccaggtcgac caccttgatg atggggttct tcgcgcgtcc agggtgctcg gcgcggagcg
      961 ctccctgctc ggtgtgcagg tcgttgtgag tcccgtggtg actggtcatc tgctgctcct
     1021 cgaagagatc tactgacgta atcgtcactc atgaggacac gttcagtcaa gagatactga
     1081 ggaaatcgtc atctctgacc gtgtcgcgct agggtggggt gcatgcacac ccttgatgga
     1141 gacgccgagg agcgatcatg agcaacgcac caacgccgca ggtcaaccgc ctggaccgtc
     1201 gcaaggcccg gacacgggcg gctctcatcc gggctgcgca gaccctcatc gcagagggca
     1261 ggaccaacgt gccgatcctg gagatcaccc aggccgcaga cgtgggaatg ggctccttct
     1321 acaaccactt cgagtccaag gagcagctgt tcgaggctgc tgtcgaggac gtgatggacg
     1381 gcttcggcca gctgctcgac accctgacgg ccgacatcaa ggaccccgcg gaggtgttcg
     1441 cctgcagctt ccgcctcacc ggaaggctca gccgccgcga gccggagctc agccgggtcc
     1501 tgctcaacaa cgtcctacgg ctgctcagcg ccgacagcgg cctggcaccg cgcgcccggc
     1561 gtgacatcgc ggccgccgtg gaggccggcc gcttcgacgt ggaggacctc gacgtcgcgg
     1621 tcacgataac ggccggcgcc ctgctcgccc tgggccagct gctgcacgac cagccggatc
     1681 gcgacgttga ggagacgaca gaccggctga ccgaggacct gctgcgcatg ctcggcgtac
     1741 cccggcggca ggctcaacgg atctgctcgc tgcccttgcc ggacatcgac gacgtgcgag
     1801 gcgacgcctc tgccgggtga cgaccctccc cgccggcttt cgcgccagtc cgcgcccagc
     1861 acgcgggcac cgtgacgtgc gccacactga cgaaatcgtc atttccgcgg tattcttcag
     1921 tcgcggtggc agcccaacgg ggagccacga cctgcagagg tcgccgcgcg tgatcgtgag
     1981 gagatccact gatgagcacc gtccctacct gcagtctcac cgagagtgcc gctcccctcg
     2041 acgtgcttct agtcgacgct gccctcggcc cggtacggcg cttcctcccc gacctgtcga
     2101 cggcgaagtg ggcggtctct ctcgcgcgca ggccggacac caccgcccgg cggctgggcg
     2161 ggctgggtgc cgaggccgcc cgcgtgctga ccggcgcctc caccgtggca ccggaccgcc
     2221 gggaccgccg gttcaccgat gtcgcgtgga gcgagaaccc gctgctgaag cggctgg
//
LOCUS       DASYFY010000312         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1703901, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000312 DASYFY010000000
VERSION     DASYFY010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1703901"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..1679)
                     /locus_tag="VGN19_06355"
     CDS             complement(27..1679)
                     /locus_tag="VGN19_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019136200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HEV7195542.1"
                     /translation="MSVATAPSLSASLSSPSPSPEPTGEMTHRQILEAMTGLLAGLFT
                     AMLSSTIVSTALPTIIGDLRGTQRQYTWVITASLLATTVSTPIWGKLSDLFSKKLLVQ
                     LSLLVFVVGSVAAGIAHSVPFLIGCRVVQGLGMGGLTALTQSIMGTMIAPRQRGRYSG
                     YMGAVMAVATVGGPLLGGVIVDSSLGWRWTFYVCVPLAVAAALILQATLHVTTVRRSP
                     RIDYLGAGLIAVTASLPLIWVTFAGHDFAWWSVQTAGYLGATLVALALTLVVEWRAAE
                     PIIPIRLLRNVTTALVVVASAAVGVAMFGGTTFLTQYFQISRGYSPTHAGLLTIPLMG
                     ALLVSSTVGGQVVSRTGRWKGIIVGGAVFLVAGLAGLGTLTHVTPMWQIAAAMAVMGF
                     GMGAMMQNLVLAVQNSVDVSHVGAASATVAFFRTLGGAIGVSVLGAILANGVRDNVVA
                     GLTALGPKGAAAAAAGGGTSTLDLKDMPGPIAGVVRAAYGDATGHIFMISAAFAVVAL
                     AAVLLVKEVPLRSTVSIADPKPAERGRVAEVAASPAAVSVAS"
     gene            complement(1679..2299)
                     /locus_tag="VGN19_06360"
     CDS             complement(1679..2299)
                     /locus_tag="VGN19_06360"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7195543.1"
                     /translation="MTYAAALAQSAPTDSPADRTTDVVSALVSLVRSTRTIARHHHQR
                     LGASGTPLAVLKSLAQRPDQDRPGDLAQATGVAPSVMSRVLARLEEDGLVTRHRDEAD
                     ARACHIALTDGGFAQLASIEHEYTLLLREALAELPAGDVDRLPELLQSLEQALLTVSE
                     RGARAGAPTLALSLTSMLPTDLEPTNLEPTNVEPAAHGPAHDHESR"
BASE COUNT          421 a          815 c          922 g          348 t
ORIGIN      
        1 tcgccttcgg ggcacctgcc cgcgggtcag ctggccactg agacagcggc cggggaagcg
       61 gcgacctcgg cgacccgccc acgctccgca ggcttcgggt cagcgatcga caccgtgctg
      121 cgcagcggaa cctccttgac gagcagcacc gcggccagag ccacgacggc gaatgccgcg
      181 ctgatcatga agatgtgacc ggtcgcgtct ccataggcag cccggacgac gcccgcgatg
      241 ggccctggca tgtccttgag gtcaagggtg ctcgtacccc cgccggccgc agcggctgca
      301 gcgcccttgg ggcccagggc agtcagcccg gcgacgacgt tgtcgcgcac accgttggcc
      361 aggatcgcgc cgagcaccga gacgccgatg gcgccgccga gcgtccggaa gaaggcgacc
      421 gtcgccgagg ccgcgccgac gtgggagacg tccaccgagt tctgcacggc aaggacgagg
      481 ttctgcatca tggcgcccat cccgaacccc atcacggcca tcgccgcggc gatctgccac
      541 atcggggtga cgtgggtcag cgtgccgagc cccgcgaggc cggccaccag gaacacggca
      601 ccgccgacga tgatgccctt ccacctgccg gtgcggctga cgacctggcc gccgacggtc
      661 gacgacacca gaagggcgcc catcagcggg atggtgagca gcccggcatg ggtggggctg
      721 tagccgcggg agatctggaa gtactgcgtg aggaacgtcg tgccaccgaa catggcgact
      781 cccaccgcgg cactcgctac gacgaccagg gcagtggtca cgttgcgcag caggcggatc
      841 gggatgatcg gctctgcggc ccgccactcg acgacgaggg tcagtgccag ggcgaccaga
      901 gtggcgccga ggtagccggc ggtctggacc gaccaccagg cgaagtcatg cccggcgaag
      961 gtcacccaga tgagcggcag cgacgcggtc acggcgatca ggcccgcacc caggtagtcg
     1021 atcctggggc tgcggcgaac ggtggtgacg tgcagggtgg cctggaggat gagggcggcg
     1081 gccacggcga ggggcacgca aacgtagaac gtccaccgcc agcccaggct gctgtcgacg
     1141 atgacgccgc cgagcagtgg gccgccgact gtggcgacgg ccatcaccgc gcccatgtag
     1201 ccggagtacc ggccccgctg gcgaggggca atcatcgtgc ccatgatcga ctgggtcagc
     1261 gccgtgaggc cgcccatccc aagaccctgc accacacggc atccgatgag gaacgggacc
     1321 gagtgcgcga tacccgcagc gaccgagccg accacgaaca ccagcagcga gagctgcacg
     1381 aggagcttct tgctgaacag gtccgacagc ttgccccaga tcggagtgct gaccgtcgtg
     1441 gccaaaaggc tggcggtgat gacccaggtg tactggcgct gagtgccccg caggtcgccg
     1501 atgatcgtcg gcagggcggt cgagacgatc gtgctgctga gcatggccgt gaacagaccg
     1561 gcgagcagcc cggtcatcgc ctcgaggatc tggcggtggg tcatctcgcc ggtgggctca
     1621 ggggagggtg aggggctgct gagcgaggcg ctcagggaag gtgcggtggc gactgacatc
     1681 aacggctttc gtgatcgtgg gcgggtccgt gggcggcggg ttcgacgttg gtgggttcga
     1741 ggttggtggg ttcgaggtcg gtgggaagca tgctggtgag gctgagggca agcgtgggag
     1801 ccccggcgcg tgcaccgcgc tccgacacgg tcagcagcgc ctgctccagg gattgcagca
     1861 gctccgggag gcggtcgacg tcgcccgcgg gcagctcggc cagggcctcg cgcaggagca
     1921 gggtgtactc gtgctcgatg gaggccagct gcgcgaagcc cccgtccgtg agcgcaatgt
     1981 ggcaggcccg tgcgtcggcc tcgtcgcggt gacgggtcac cagaccgtcc tcctcgaggc
     2041 gggcgagcac ccgactcatg accgatggcg cgacgccggt cgcctgggcg aggtcgccgg
     2101 gccggtcctg gtcaggcctt tgcgccaggg acttgagcac cgcaagtgga gttcccgagg
     2161 cgcccagccg ctggtggtga tggcgcgcga tcgtccgcgt ggaccggacc aggctgacca
     2221 gggccgagac gacgtcggtg gtgcggtcgg ccgggctgtc agtgggcgcc gactgggcga
     2281 gggcggcggc atacgtcatg accggactcc tttggttgca gaacacaacc atatcccgag
     2341 ttagttgcga atcgcaactt ctcgacacct cgtcgctcgg taggcgccaa gtcccagact
     2401 tggtggctat cacgacccgt atgccgccaa gtcccagact tggtggctca ccaggcgcca
     2461 agtcccagac ttgggccctc ggtaggagcc aagtcccaga cttggt
//
LOCUS       DASYFY010000313         2140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_336893, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000313 DASYFY010000000
VERSION     DASYFY010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336893"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..864)
                     /locus_tag="VGN19_06365"
     CDS             complement(<1..864)
                     /locus_tag="VGN19_06365"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEV7195544.1"
                     /translation="MTLIGDDLAVPCLDGQDRPYLNLDNAASTNALPAVAQRVQGFLP
                     WYSSVHRGAGYKSRQATDAYERARAGALSFAGRADGDGDVAIICRNTTEAINHLAYRL
                     RLAPNDVVVTTVVEHHANLLPWARLCQRRFVETGPDGTFTAEDVARVLDGGSTPRLLA
                     LTGASNVTGWLTPLGPIVELAHERGIPVLADAAQLAPHRRLPAEADFVAWSGHKMYAP
                     FGAGVLIGPRAAFADGDPFLAGGGAVDLVDLDEIIWADPPEREEAGSPNVVGAVALHA
                     ASNELTRIGWDA"
     gene            complement(1251..1814)
                     /locus_tag="VGN19_06370"
     CDS             complement(1251..1814)
                     /locus_tag="VGN19_06370"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195545.1"
                     /translation="MSWFQATPTASLELLDALGVSPQSAVIDVGGGASLLVDHLLERG
                     FDDVSVLDVSEVALRSARSRLTSSAPVTWVRDDVLTWRPQRGFDLWHDRAVFHFLTDA
                     VDRLTYLRTMRRALRPCGTVIVGTFASDGPDHCSGLPVARYSSEELADAIGPEFDIVA
                     VRREVHTTPTGAVQPFSWLAGRLRCGR"
     gene            complement(1925..>2140)
                     /locus_tag="VGN19_06375"
     CDS             complement(1925..>2140)
                     /locus_tag="VGN19_06375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195546.1"
                     /translation="LVVIGHDRSNLTAGVGGPQDPAILFTPEEIVSDLHGLDIVRSQR
                     VVRKVKTPDGERDAIDALVVAVAPGVA"
BASE COUNT          364 a          709 c          744 g          323 t
ORIGIN      
        1 cgcgtcccag ccgatccggg tcaactcgtt gctcgcggcg tgcagcgcga cagcgccaac
       61 cacgttgggc gacccggcct cctcgcgttc gggcggatcg gcccagatga tctcatcgag
      121 gtcgaccagg tccaccgccc cacccccagc aagaaacggg tcgccgtccg cgaaggccgc
      181 acgcggaccg atgaggacgc ccgcgccgaa cggcgcgtac atcttgtggc cgctccacgc
      241 cacgaagtcg gcctctgcag gcagtctccg gtgcggcgcc agctgggcag cgtcggcgag
      301 gacgggaatg ccccgctcgt gcgccagttc gacgatcggc ccgagcgggg taagccagcc
      361 agtgacgttg gacgctccgg tcaaggccag cagccgcggt gtgctgccac cgtccaggac
      421 ccgcgcgacg tcctccgcgg tgaacgtgcc gtcgggaccg gtctcgacga agcggcgctg
      481 gcagaggcgc gcccacggca gcaggttggc gtgatgctcc acgaccgtgg tcaccacgac
      541 atcgttgggc gcaaggcgca gccggtaggc gaggtgattg atcgcctcgg tcgtgttccg
      601 acagatgatg gccacgtccc catcgccgtc ggctcggcca gcgaaggaga gagctcccgc
      661 gcgtgcgcgc tcgtacgcgt cggtggcctg tcgcgacttg tagcccgcgc cgcgatgcac
      721 gctcgagtac caggggagga aaccttggac acgctgcgcc acggccggca acgcgttggt
      781 ggacgcggcg ttgtccaggt tgagatacgg tcggtcctga ccatcgaggc aggggaccgc
      841 gaggtcatct ccgatgagtg tcaccagcct gtcatccctc gcgccaggca gagcttccag
      901 ggaagcgggt gcgtgaggag gatgaagacg agcgacgggt gcggtcattg tggccctcgg
      961 tgcctccggt cgggtcgtcg gcgaggcgtg gtagctgagt cttcgtccgc gcgcagggcg
     1021 ttgccagagg agaaggtccc gacactgagt tgacgtctga cccgcagatc ggtccggagt
     1081 gtgggcagcg atcaccgccg ccggggcaag cctgtgcctg acgcggcgtc ggggcagaag
     1141 cgaggtttcg cgagcccggc agcggagcag cggccgcaca gtgcctctca gccagggggc
     1201 gtcagcacgg tcccacttgt ggtggccggc gaggtctgca tgccggtcgt ttaacggccg
     1261 catcgcaacc gtcccgccaa ccaactgaag ggttggactg cacctgtggg tgtggtatgt
     1321 acctcgcgtc gcacggcaac aatgtcgaac tcagggccga tggcgtcggc gagttcctcc
     1381 gaactgtatc gagccaccgg cagccccgag cagtggtcgg gcccgtcgga ggcgaaggtc
     1441 cccacgatca cggtgccaca cggacggagg gcacggcgca tcgttctcag gtacgtgaga
     1501 cggtcgacag cgtcggtgag aaagtgaaag acggcgcggt cgtgccacag gtcgaaacca
     1561 cgttgcggac gccaggtcag gacatcgtcg cgaacccagg tcaccggggc actcgaggtg
     1621 agccggcttc tggcactcct gagcgccact tctgacacgt cgagaacgga aacgtcgtcg
     1681 aatccacgct cgaggaggtg atcgaccagc agcgaggccc caccgccaac gtcgatcacg
     1741 gcagattgcg gtgagacccc aagggcgtcc aggagctcga gggacgctgt cggcgtcgcc
     1801 tgaaaccagc tcatctcggt gagtccgcga ccgctgtaga ccccgtccca atgagtcgcg
     1861 cgtcctccat cgacgtcgcc agcgccgccc atcggcgtgg gcgaggaacc gtccccgggc
     1921 tgtttcacgc aactccaggc gcaacggcta cgacgagagc atcgatggca tcgcgctctc
     1981 cgtccggcgt cttcacctta cgcacgaccc tctggctccg aacgatgtcg agcccgtgca
     2041 gatcgctgac gatctcctcg ggcgtgaaga ggatggctgg gtcctgcggg ccgcccacac
     2101 ccgcggtcag gttcgacctg tcgtgaccga tgacgaccag
//
LOCUS       DASYFY010000314         2271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_653320, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000314 DASYFY010000000
VERSION     DASYFY010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653320"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VGN19_06380"
     CDS             complement(<1..534)
                     /locus_tag="VGN19_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020076685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7195547.1"
                     /translation="MMLSGKTIVVTGGNSGIGAAIATVAGREGANVVIDYVAHPEAAT
                     QLDTTITTEGGQAIAVEADASKVEDIQRLLDTAVREYGRVDVMVNNAGIETRTSLLDS
                     TEADFDRVMAVNLKSAFFGTQLAAKQFIAQGGGGVVVNISSVHEDWPMPGNAPYCVSK
                     GGMRMLTRTAGVELGTHG"
     gene            complement(531..>2271)
                     /locus_tag="VGN19_06385"
     CDS             complement(531..>2271)
                     /locus_tag="VGN19_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucosidase"
                     /protein_id="HEV7195548.1"
                     /translation="DDPFAADFEALFTDRRAEADDFYAGVIPEHVDDNDRAVARRAFA
                     GLLWGKQLYRYSVSEWLEGDPGQPAPPTGRSAPEPAGRNTSWRHLALADVISMPDEWE
                     YPWFASWDLAFHCVTLAHIDPAFAKNQLLLICREWAQHPDGQLPAYEWSFSDVNPPVH
                     AWAVWQVFVIDGQRDFVFLVRAFSKLLMNFAWWVNRKDPNGSDLFAGGFLGMDNIGLF
                     DRSRQVPPGWQLDQSDATSWMAFFSLSMLRIALELARTDVAWDDLATTFLERFLAIAE
                     AMEATASGISLWSDTDGFFYDALVAQDGVGYQQLPVRTMVGLIPLLAVAIAPEWVDKE
                     LPDFAGRLQWLQQHRPEQTSALVTSRGPDGTHRTFALVDPARYLRVLERLLDEQEFLS
                     QYGIRSLSAAYRNGFSVVVDGTTLDTRYDPGESTSGLFGGNSNWRGPVWFPVNVLLTD
                     ALRTYAQGAGADVTVELPTGSGIRMPLAAAADDLERRLVGLFRPGADGRRPSDPRDRG
                     DGPLWTEHPTFSEYFHGDTGIGLGASHQTGWTAMVAHLICSTPLATSPNQTESRTTKG
                     QTQGQPNQGENHP"
BASE COUNT          341 a          716 c          829 g          385 t
ORIGIN      
        1 gccgtgggtg ccgagctcga ccccggccgt ccgggtcagc atgcgcatgc cgcccttgga
       61 gacgcagtac ggcgcattgc cgggcatggg ccagtcctcg tgcaccgacg agatgttgac
      121 gacgaccccg ccgccaccct gggcgatgaa ctgcttggcc gcgagctggg tgccaaagaa
      181 ggcgctcttg aggttcaccg ccatgacgcg gtcgaagtcg gcctcggtcg agtccagcag
      241 cgaggtgcgg gtctcgatgc cagcgttgtt gaccatgaca tcgacccgtc cgtactcgcg
      301 gacagcggtg tccaggaggc gttggatgtc ttcgaccttg ctcgcgtcgg cttcgaccgc
      361 gatcgcctgg ccgccttccg tggtgatcgt ggtgtcgagc tgggttgccg cttcggggtg
      421 ggcgacgtag tcgatgacga cgttggcgcc ctcgcgtcca gcgaccgtgg cgatggccgc
      481 gccgatgccg ctgttgccgc cggtgacgac gatggtcttg ccactgagca tcatgggtgg
      541 ttctctcctt ggttgggctg gccttgggtt tggcccttgg tggtccggct ctcggtctgg
      601 ttcgggctcg tcgccagtgg ggtggaacag atcaggtggg cgaccatggc ggtccagccg
      661 gtctggtgcg aggcgccgag gccgatcccg gtgtcaccgt ggaagtactc gctgaacgtg
      721 gggtgctccg tccacagcgg accatcgccg cggtccctcg ggtctgaggg tcgccggcca
      781 tcggcgcctg gtcggaacag gccgaccagt ctccgctcga ggtcgtcggc cgcggcggcg
      841 agcggcatcc ggatcccgct gccggtgggg agctcgacgg tgacgtcagc gcccgccccc
      901 tgggcgtagg tccgcagagc gtcggtgagc aggacgttga cagggaacca gacgggtccg
      961 cgccagttcg agttcccccc gaacaacccg gaggtggact cgccggggtc gtaccgcgtg
     1021 tccaaggtgg tgccgtcgac gacgacggaa aagccgttgc ggtatgccgc cgagagcgac
     1081 cggattccat actgcgagag gaactcttgt tcgtcgagca gccgctcgag cacccggaga
     1141 tagcgcgccg ggtcgacgag cgcgaaggtg cggtgggtcc cgtcgggtcc ccgggaggtg
     1201 actagtgcgg aggtctgctc tggccggtgc tgctgcagcc actgcagccg gccggcgaag
     1261 tcgggcagct ccttgtcgac ccactccggg gcaattgcca cggccagcag cgggatcagc
     1321 cccaccatgg tccgtactgg cagctgctgg tagccgacgc cgtcctgcgc tacgagcgcg
     1381 tcatagaaga agccgtcggt gtcgctccac agcgagatgc cgctcgcggt cgcctccatg
     1441 gcttcggcga tggccaggaa ccgctcgagg aaggtggtcg cgaggtcgtc ccaggcgacg
     1501 tcggtccgtg ccagctccag ggcgatgcgc agcatcgaca ggctgaagaa cgccatccag
     1561 ctggttgcgt cggactggtc gagctgccat cccggtggga cctggcggga gcggtcgaac
     1621 aggccgatgt tgtccatgcc gagaaacccg cccgcgaaca ggtcggagcc gttggggtcc
     1681 ttgcggttga cccaccacgc gaagttcatc aggagcttgc tgaacgccct gacgaggaag
     1741 acgaagtcgc gttgcccgtc gatgacgaag acctgccaca ccgcccaggc atgcaccggt
     1801 gggttgacgt cagagaacga ccactcgtag gccgggagct ggccgtcggg atgctgcgcc
     1861 cattcgcgac agatcaggag cagctggttc ttcgcgaacg cggggtcgat gtgggcgagc
     1921 gtgacgcagt ggaacgccag gtcccaggag gcgaaccagg ggtactccca ctcgtcaggc
     1981 atcgagatga cgtctgcgag cgctagatgg cgccaggacg tgtttcggcc ggctggctcg
     2041 ggtgcgctgc ggccggttgg gggagctggc tggccgggat cgccctcgag ccactcgctg
     2101 acggagtacc gatacagctg cttgccccac aagagtccgg cgaacgccct tcgggccacc
     2161 gcccggtcgt tgtcgtcgac gtgctcgggg atgacgcccg cgtagaagtc gtcggcctcg
     2221 gccctgcggt cggtgaacag ggcctcgaag tccgctgcga aggggtcgtc g
//
LOCUS       DASYFY010000315         1962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1126327, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000315 DASYFY010000000
VERSION     DASYFY010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126327"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VGN19_06390"
     CDS             <1..180
                     /locus_tag="VGN19_06390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195549.1"
                     /translation="VVTPEGPGRVVGLNVPSETVKVRLDETGRTCSCSLASVCGSRQD
                     YESSRKDGSMRWDAE"
     gene            338..1861
                     /locus_tag="VGN19_06395"
     CDS             338..1861
                     /locus_tag="VGN19_06395"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7195550.1"
                     /translation="MTGCGGSSHAAQKPSAAAASSAASAFAAIPAGLQQFYGQKPDWT
                     SCTPGGSGPGWTCAKITVPLDYADPSKGTTFIMATRKAATGPADQRVGSLLLNPGGPG
                     GAGIAYAQDPSVVTKNVAARYDIVGFDPRGVGQSDPIRCLSNDTAAMDEFVSADPMPR
                     TDAQVAEVVKESTAVGKACQQKSARLLPYVGTPNAARDMDVIRAVLGDSKLHYLGKSY
                     GTYLGAVYAGLFPQNTGRLVLDGAIDPTLSPKQMNVAQARGFEKLIREFAANCVTQSG
                     CPLGTDSSTAVDRLMTYLQSLQDHPVPTRDGNRTVNYGLGLTAVLQVMYVPQYWGDLR
                     DALSAAMSGDGTRLLQWADLYNDRTDGTYDNQTDANIAINCLDRPDPEAATAQQIEKK
                     EVPDYKSQAPLLGEMLAWADLSCATWPVKPQSQPAPITAPGSAPILVVGTKDDPATPY
                     PWAQGLAKQLQNGHLLTFNGSGHTAYTRGSHCIDNAVDAYLLQSTVPPPGITCDVSP"
BASE COUNT          342 a          713 c          638 g          269 t
ORIGIN      
        1 gtggtgacgc cggagggtcc ggggcgggtc gtcgggctga acgtgccgtc ggagacggtg
       61 aaggtgcggc tggacgagac gggacggacg tgttcgtgct cgctggcctc ggtgtgcggg
      121 tcgcgtcagg actatgagtc gtcccgcaag gacggctcca tgcggtggga cgcggagtag
      181 ccgcctcccc ctatccggct gcggcgtggt gtggaatcgg acttttctgg atagctagtc
      241 acaaacgatg ccccgcgccg caggaggagt acgtactgtg aaacccagtc cgacagcacg
      301 gcgggcctta gccgtggcca ctgccggcct tctcctgatg actgggtgcg gtggcagttc
      361 gcacgcggcg cagaagccct cggcggcggc agcgtcgtcg gcggcgtccg ccttcgccgc
      421 gatccccgcg ggcttgcagc agttctacgg ccagaaaccg gactggacgt cgtgcacgcc
      481 gggcggcagc ggccccggct ggacgtgcgc gaagatcacg gtgccactgg actacgcgga
      541 cccgtccaag gggacgacgt tcatcatggc gacccgcaag gccgccaccg ggccggcgga
      601 ccagcgcgtg ggttcgctgc tgctgaaccc gggcggcccg ggcggcgcgg ggatcgccta
      661 cgcgcaggac ccgagcgtgg tgacgaagaa cgtggcggcg cgctacgaca tcgtcggctt
      721 cgatccccgc ggcgtcggcc agtccgaccc gatccgctgc ctgtcgaacg acacggcggc
      781 gatggacgag ttcgtctcgg cggatccgat gccgcggacc gacgcgcagg tggcggaggt
      841 cgtgaaggaa tcgacggcgg tcggcaaggc gtgccagcag aagtcggcgc gcctgctgcc
      901 ctacgtcggc acccccaacg cggcgcggga catggacgtc atccgcgcgg tgctcggcga
      961 ctccaagctc cactacctgg gcaagtccta tggcacctac ctgggtgcgg tctacgcggg
     1021 gctgtttccg cagaacacgg gacgcctggt cctggacggc gcgatcgacc cgaccctgtc
     1081 ccccaagcag atgaacgtgg cgcaggcgcg gggcttcgag aagctgatcc gcgaattcgc
     1141 cgccaactgc gtgacccagt ccggctgccc cctcgggacg gacagctcga ccgcagtcga
     1201 caggttgatg acctacctgc agtccctcca agaccacccg gtccccaccc gcgacggcaa
     1261 ccgcacggtg aactatggac tcggcctgac agcggtgctg caggtgatgt acgtcccgca
     1321 gtactggggc gacctccgcg acgcgctaag cgcagcgatg agcggcgacg gcacccgcct
     1381 cctccagtgg gcggacctgt acaacgaccg caccgacggc acgtacgaca accagacgga
     1441 cgccaacatc gccatcaact gcctcgaccg ccccgacccc gaagccgcca ccgcgcagca
     1501 gatcgagaaa aaggaagtcc cggactacaa gagccaggcg cccctcctcg gcgagatgct
     1561 cgcctgggcc gacctgtcct gcgccacctg gcccgtgaag ccccaatccc agccggcccc
     1621 catcaccgca cccggcagcg cccccatcct cgtcgtcggc accaaggacg accccgccac
     1681 cccctacccc tgggcccagg gcctggccaa gcaactacag aacggccacc tcctcacctt
     1741 caacggaagc ggccacaccg cctacacccg aggctcccac tgcatcgaca acgcagtaga
     1801 cgcctacctc ctccaatcca cagtcccacc cccaggcatc acttgtgacg tcagcccgta
     1861 gcgtcaggta cactcgtgca ccggccctca gcgcacactg acgggcccgg gcctccttag
     1921 ctcagtcggc cagagcgacg cactcgtaat gcgtaggtca tc
//
LOCUS       DASYFY010000316         2393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1021694, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000316 DASYFY010000000
VERSION     DASYFY010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1021694"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..>2393)
                     /locus_tag="VGN19_06400"
     CDS             complement(92..>2393)
                     /locus_tag="VGN19_06400"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEV7195551.1"
                     /translation="VHDGRGWLSAGETAFIDASERADSRVRLDLVEGLRAQRKINRRL
                     RTFVTVAAVALLVATTAVGLALHARDTANRTATQSAARGLAAQALTTRRLDVSLLLAA
                     QAAMLDPGVAARSALLAAQAQAPQATRVFTGTGQRLDTVAVGGPGPIVVAIDRTRHAD
                     AFNLGTGLTTTMGQGPNGTQAAAFSPDGSLLALGGAALGDPAKGRIEFVDPSTMAASG
                     PAVTTPSPVVALRFAGRAPRLAAVMMSGQTDVLDTSTHAVAWSAQGAKTPYAATVDLS
                     QNGHYLTANAPAVLWNVGSRVAKPIVLEGDRSAITPDGSLIAVATGTQIRLVQRAGLT
                     PYRVLGSSATSVESMAFSPDGSALASGSDDGSVVEWDVATGKRRATFAGHDGRVNCVA
                     FSPDGHALVSAAMDGRVVAWDLTDSLGLIGAVGSVRGVTPEVMAGSYVAVTPTTGRML
                     VGTADGRVLITQFPGGGRLSAYTTAPGGNANDAQVSRDGDIGAVATSNNLVSLWDLRS
                     GRPYSVHPTIHTPVQPSTVAVSPDDRTIAWGDIAGGLTAMSLVSGKVLWHRQLGHPVD
                     PPSAGSVMIITFSPDGSHLAVGVSHVATELIQADGSGAVRSFHSADDNSLSVVFSPDG
                     GRLATADSDGSARVWTLSTGAGEDLGTPLGAASAVIFGSSFGPKGDTLVTYAGDGTVQ
                     LWDAATASPVGPRLTGGTTPVMAAGWLDNDTLATFQADGTVRRITVGSTALQHRACTV
                     AGRTLTPAEWSQYLPDRPYSPACKPS"
BASE COUNT          355 a          785 c          891 g          362 t
ORIGIN      
        1 catggctcac cgcggtcgag cccgccccac ggctggcccc gctcagcctg ggcaggcgta
       61 caggaggtac gggcggggac gtgacgaggg tctagctggg cttgcaggcc ggggaatatg
      121 gtctgtcggg caggtattgg gaccactcgg ctggggtgag tgtgcgtcca gccacggtgc
      181 aggctcggtg ttggagcgcg gtggatccga ccgtgatccg tctcactgtc ccatcggcct
      241 ggaaggtggc gagggtgtcg ttgtcgagcc agccggcagc catgacgggg gttgttcccc
      301 cggtcaggcg cggcccgacc gggctcgcgg tggcggcatc ccagagctgg acggtgccat
      361 caccggcata cgtcaccaag gtgtcgccct tcgggccgaa gctggacccg aagatgacgg
      421 cgctcgccgc gccgaggggt gtccccagat cctccccggc tcccgttgac agcgtccaca
      481 cgcgggcgct gccgtcgctg tccgccgtcg ccagccggcc gccgtcgggt gagaagacga
      541 ctgagagtga gttgtcgtcc gcgctgtgga acgaccggac ggctccgctg ccgtctgcct
      601 ggatcagctc ggtggcgacg tgggagacac cgacagccag gtgcgatccg tccgggctga
      661 acgtgataat catgacgctg cccgcggatg ggggatcgac cgggtgcccg agctggcgat
      721 gccacaggac ctttccgctg accagggaca tcgcggtgag gcctcctgca atatcccccc
      781 aggcgatggt ccggtcgtcg ggggagacgg cgaccgtgct gggttggaca ggtgtgtgga
      841 tcgtgggatg aacggaatac ggtcgccccg accggaggtc ccaaaggctg acgaggttgt
      901 tgctagtggc gacggcgccg atgtcgccgt cccgactgac ctgggcatcg ttggcgttgc
      961 ccccgggcgc ggtggtgtag gcgctcaggc ggccaccacc ggggaactgg gtgatcagga
     1021 ctctgccgtc ggcggtgcct acgagcatcc tgccggtcgt cggggtgacg gccacgtacg
     1081 acccggccat gacctcgggc gtcaccccac ggacggagcc gaccgcccca atgaggccga
     1141 ggctgtcggt gagatcccac gccaccacgc ggccgtccat cgcggcgctg accagggcgt
     1201 gcccgtccgg ggagaacgcc acacagttga cccgcccgtc atgaccggcg aacgtggcac
     1261 gacgcttccc ggtcgccaca tcccactcca cgaccgagcc gtcgtcggat ccgctggcca
     1321 aagctgagcc gtcgggcgag aaggccatgg actcgaccga ggtagccgat gatccgagta
     1381 cccggtaggg ggtcaggcct gctctttgga cgaggcggat ctgggtgccg gtggcgacgg
     1441 cgatgaggct tccgtccggc gtgatggctg accggtcacc ttccagcaca atgggtttcg
     1501 cgacacgact gccaacattc cagagcacgg ccggcgcgtt tgccgtgagg tagtgcccat
     1561 tctgggaaag gtccacggta gcggcatacg gagtcttcgc gccctgggcg ctccacgcga
     1621 cagcgtgtgt gctggtgtcc aggacgtcgg tctgcccgga catcatcacc gccgcgagcc
     1681 gcggtgcgcg gcccgcgaac cgcagcgcca ccaccgggga tggtgtcgtg acagccggtc
     1741 ccgaagcagc catggtcgag gggtcgacga actcgatgcg gcccttggct gggtcaccga
     1801 gggcggcacc gcccagggcc agaagggatc cgtcgggcga gaaggcggca gcctgcgtgc
     1861 cgttcggacc ttgccccatc gtggtcgtca ggccggtgcc gaggttgaac gcgtcggcat
     1921 ggcgggtgcg gtcgatggcg acgacgatcg ggcctgggcc gccgaccgcg accgtgtcca
     1981 gtcgctgccc ggtcccggtg aagacgcgcg tggcctgggg tgcctgcgcc tgcgcggcga
     2041 gtagtgcgga tcgggccgcg accccgggat ccagcatcgc tgcctgggcg gcaagcagga
     2101 gggagacgtc caggcgccgt gtcgtcagcg cctgcgctgc gagtccgcgc gcagccgact
     2161 gggtcgcggt ccggttcgcc gtgtcccgag cgtgcaaggc cagacccaca gccgtggtcg
     2221 ccaccaggag ggctacggcg gcgaccgtga cgaaggtccg caggcggcgg ttgatcttcc
     2281 gctgcgcacg caggccctcc accaggtcga ggcgaacccg cgagtcggcg cgttcgctgg
     2341 cgtcgatgaa cgcggtctca ccggcggaga gccagccacg gccgtcatgg acg
//
LOCUS       DASYFY010000317         3337 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1179312, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000317 DASYFY010000000
VERSION     DASYFY010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1179312"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            404..1492
                     /locus_tag="VGN19_06405"
     CDS             404..1492
                     /locus_tag="VGN19_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7195552.1"
                     /translation="MSALSSDDASSDRLSQERVAALMPMVRRIVVARVGQHPSADDLV
                     QEVLVKVLAALPRIEDGMLEPYAIVTARNVVASMWRDNDRQKRNLHRVVDLHPPERPD
                     EQLVASEEQAAIAHALSQLTVRERETLLAHEVAGDDTRALASRAGSTAGAVAAQLNRT
                     RARLRVEYLLALEQSEPPSEVCRPVLLALSSGDRRRQQAVDAGRHVLECDLCGRLSVP
                     LLARGHQRQDTVQIPVSTDSDVVAARRAARELAARLEFSGTDLTILATAVSEVTRNIV
                     KFTDGGEVVVELVEDGGRKGVQVVARDAGPGIPDIDQAMADGYSTYDGLGIGLPGARR
                     LMDEFAVVSQTGRGTTITMTMWCKEGQR"
     gene            1498..2406
                     /locus_tag="VGN19_06410"
     CDS             1498..2406
                     /locus_tag="VGN19_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEV7195553.1"
                     /translation="MSQNPPPADGPRTTDDPTVAAEQEQLLPQLVAHLREHRSKLREE
                     WVGRIRDAHLLEAMTQQEMAAETTSVYDNYVEVLETGSVEALQHYARDLSERIIPRGV
                     ETHEVVGIVLLLRDVLARSLFEKYQRDFGLLNRILDAYEPAANRIANTVAVSFVDERE
                     RVIRQQQDAIRELSTPVLPVRERLLILPIIGVLDSERARQLTEQLLAGIRTHRAKVVV
                     IDITGAPDVDTTVANHLVQTVDASRLMGASVIITGLSPTIAQTLVTLGVDLSKIHTMG
                     DLQGGLEEAERLLGYHVTRKDGATTT"
     gene            2403..2801
                     /locus_tag="VGN19_06415"
     CDS             2403..2801
                     /locus_tag="VGN19_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEV7195554.1"
                     /translation="MSSGPALVSILRQGSFLIASVHTALDDSEMLRFRGDLIDQIGRY
                     RARGVIIDVAALDVLDSFGFNTLRGIAEMARLRGAETVIVGIQPDLALAMVQLGMGPG
                     PVATALDLEEGLDFLYSRLSAPPDRLGSRG"
     gene            2794..3081
                     /locus_tag="VGN19_06420"
     CDS             2794..3081
                     /locus_tag="VGN19_06420"
                     /inference="COORDINATES: protein motif:HMM:NF020257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase RsbU N-terminal domain-containing
                     protein"
                     /protein_id="HEV7195555.1"
                     /translation="MDELVALTRDYRTAFLRYLPRHDETALAAAYDLGRGAVSTGVSL
                     LDILGVHHIVLAEILHDSPDEMADIVPSAAAFLANALAPYDMASRAALDNG"
     gene            complement(3221..>3337)
                     /locus_tag="VGN19_06425"
     CDS             complement(3221..>3337)
                     /locus_tag="VGN19_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEV7195556.1"
                     /translation="GTEAMNGLIELHRRIARGFRNRNNYRLRMLLIGGGLLL"
BASE COUNT          543 a         1122 c         1155 g          517 t
ORIGIN      
        1 gatgaccctc gggggccagg tgttagccgt ggcaggaaag tcgtgcttta cctcaccctg
       61 ttgaccctgg tcctcgcgct tcctgggctg ctcctgatgg accgcgtcga gcgatgggca
      121 gccggcgccc actcccaggc attccgcgtg gctcgcaccg tgcccacggc cgagacggcc
      181 cgctggcccc acgggagcgc tagcggcacg cggacgtcat cggccggcac aacgcaggcg
      241 actccgtgcg gacccagaac cggacccgca ccgaccgaga gtggcgttgc gatgacctct
      301 cgccaacgaa tcctccacca ccccgagatc acacgggcgc gtcctggtgt tgtgacgccg
      361 ctacggcggg cggatgacga gggacgccgt tagtgtccga gacgtgagcg ccttgtcgtc
      421 tgacgacgcg tcgtcggatc ggctcagcca ggagcgtgtg gctgcgttga tgccgatggt
      481 gcgtcgtatc gtcgtggcgc gcgtggggca gcacccctca gcggatgacc ttgtccagga
      541 ggtcctggtc aaggtcctgg ccgcgttgcc ccggatcgag gacgggatgc tcgagccgta
      601 cgccatcgtg accgcccgca acgtcgtggc gtcaatgtgg cgggataatg accgccagaa
      661 gcgcaacctg caccgcgtcg tcgacctcca tccgccggaa cggccggacg agcagctagt
      721 ggcctccgag gagcaggccg cgatcgccca cgccttgtca cagttgaccg tccgagagcg
      781 ggaaacgctc ctcgcgcatg aggttgccgg tgatgacacc cgggcgcttg cgtcgcgggc
      841 tggctccacg gcgggtgcgg tggcggcgca gctcaaccgc acccgggcgc gcctgcgagt
      901 ggagtacctg ctggccctgg agcagtccga gccgccgagc gaggtgtgcc gtcccgtcct
      961 gctcgcgctg tctagcggtg accgtcgacg gcaacaagcc gtcgacgcgg gacgccacgt
     1021 gttggagtgc gacctgtgtg ggcggcttag tgtcccgctt ctggctcgag ggcaccagcg
     1081 acaggacacg gtccagatcc cagtctcgac ggactccgac gtcgtcgcgg ccaggcgtgc
     1141 ggcacgggag ctggccgccc ggttggagtt ctccgggact gacctgacca tcctggcgac
     1201 ggcagtctcc gaggtcaccc gcaacatcgt caagttcacc gatggcggtg aggtcgtggt
     1261 ggagctggtg gaggacggcg gccgcaaggg agtgcaggtg gtcgcccggg acgccggacc
     1321 gggcataccg gacatcgacc aggcgatggc cgacgggtac agcacatacg acgggctggg
     1381 aatcgggctg ccgggcgcgc ggcgcctgat ggacgagttc gcggtcgtgt cgcagaccgg
     1441 tcgggggacc acgatcacca tgaccatgtg gtgcaaggaa ggacaacgat gagccagatg
     1501 agccagaatc caccgccggc cgacggaccg cggacaaccg acgaccccac cgtcgcggcg
     1561 gaacaggagc agctgctgcc acagctggtc gcgcacctgc gcgaacaccg gtcaaagctg
     1621 cgggaagagt gggtcggccg gatccgtgac gcgcatctgc tggaggcgat gacccagcag
     1681 gagatggcgg ccgagacgac ttccgtctac gacaactacg tcgaggtcct ggagaccggc
     1741 agcgtcgagg cgctgcagca ctacgcgcgc gacctgtccg agcggatcat cccgcgcgga
     1801 gtggagaccc acgaggtggt gggcatcgtg ttgctgctgc gggacgtcct cgctcggtcg
     1861 ctgttcgaga agtaccagcg ggacttcggc ctgctcaacc ggatcctgga cgcctacgag
     1921 ccggcggcga accggatcgc caacaccgtc gcggtcagct tcgtcgacga gcgggagcgg
     1981 gtcatccgtc agcagcagga cgcgatccgc gagttgtcca cgccggtgct gccggtgcgg
     2041 gagcggctgc tcatcctgcc gatcatcggc gtgctggaca gcgaacgcgc ccgccagctg
     2101 accgaacagc tgctcgccgg catccgcacg catcgagcca aggttgtcgt catcgacatc
     2161 accggcgccc cggacgtcga cacaacggtc gcgaaccacc tcgtgcaaac cgtcgacgcg
     2221 tcacggctga tgggcgcgag cgtcatcatt accggactgt ccccgaccat cgcccagacg
     2281 ctggtgaccc tcggggtcga cctgagcaag atccacacca tgggcgacct gcagggcggt
     2341 ctcgaagagg ctgaacggct cctcggctac cacgtcacca ggaaggatgg tgccaccacc
     2401 acgtgagctc cggaccggcg ctcgtctcga tcctgcggca gggctcgttc ctgatcgcgt
     2461 cggtccacac tgccctcgac gactccgaga tgctgcgctt ccgcggcgac ctcatcgatc
     2521 agatcggccg gtatcgggcg cgtggggtca tcatcgacgt cgcagccctg gacgtgctcg
     2581 actcgttcgg gttcaacacg ctgcgcggaa tcgccgagat ggcccggctg cggggggcgg
     2641 aaacggtcat cgtcggaatc cagccggacc tggcgctggc catggtgcag ctggggatgg
     2701 ggcccgggcc ggtcgccacc gcgctggacc tcgaggaagg cctggacttc ctgtactccc
     2761 gactctccgc accgcccgac aggctcggca gtcgtggatg agctggtagc cctcacacgg
     2821 gactaccgca ccgccttcct gcggtacctc cccagacatg atgagacagc cctggcggcg
     2881 gcgtacgacc tcggccgggg agctgtctca accggggtca gcctgctcga cattctcggc
     2941 gttcaccaca tcgtgctcgc cgagatcctc catgacagcc ctgacgagat ggccgacatc
     3001 gtgccctcgg ctgccgcgtt cctcgccaac gccctcgcgc cctatgacat ggcttcacgc
     3061 gccgccctcg acaacgggta gcacaacgga cggccgccgg tgcccagttc gtatgagcct
     3121 cagcgcccgc cgtcgtgggg aaggactcgg cactgacccc aaccgtggcc tggccccgcg
     3181 gcgcgaacgg ttatgcggct cttcgccgtt gagtgtgggg tcataggagt agtccgccgc
     3241 cgatgaggag cattcggagg cggtagttgt tgcggttgcg gaagccgcgg gcgatgcggc
     3301 ggtggagctc gatgaggccg ttcatggcct cggtgcc
//
LOCUS       DASYFY010000318         3307 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_916326, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000318 DASYFY010000000
VERSION     DASYFY010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_916326"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1099
                     /locus_tag="VGN19_06430"
     CDS             <1..1099
                     /locus_tag="VGN19_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195557.1"
                     /translation="LASMSHELRTPLNAVLGFSEVLLERMFGEINEKQEDYLRDIHGS
                     GKHLLELLNEILDLSKVEAGQMELQFTDLEIPVALEYAVSMLRERASAHSIDLRVELG
                     EGLVPVEVDELRFKQVVLNLVSNAVKFTPDGGSVVLRAERVDTDLQVSVADTGVGIPV
                     EDRERIFDSFQQGGRGASREEGTGLGLTLSRRIVELLGGRMWLESEVGQGSTFGFAIP
                     LRPTRGEVQRDGDGPALASIVVIEDDRPSLDLLTAYLSGATLRVTTARDGQSGLDAVR
                     RVRPSAVLLDIRLPGLDGWAVLEAVKSEPETKHIPVIVLSIVDERSRGAALGAAAYLV
                     KPVSRDELLAALATVGIDVSTAGSAGIGQET"
     gene            complement(1112..1531)
                     /gene="msrB"
                     /locus_tag="VGN19_06435"
     CDS             complement(1112..1531)
                     /gene="msrB"
                     /locus_tag="VGN19_06435"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEV7195558.1"
                     /translation="MRSSDKTYPVAKTEEQWRQELSRDEYNVLRQAGTERPFVGEYTD
                     TTTEGVYACRACGAELFTSETKLESHCGWPSFYAPLAGDSVEYIEDRAMGMKRVEVRC
                     ATCGSHLGHVFEGEGYGTPTDQRYCINSISMTLRPKA"
     gene            1584..2387
                     /gene="ligD"
                     /locus_tag="VGN19_06440"
                     /pseudo
     CDS             1584..2387
                     /gene="ligD"
                     /locus_tag="VGN19_06440"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
     gene            2688..>3307
                     /locus_tag="VGN19_06445"
     CDS             2688..>3307
                     /locus_tag="VGN19_06445"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009357054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEV7195559.1"
                     /translation="MLAKPVKGIPNGEYLFEPKWDGFRSVIFRSGDRVEIGSRNEKPM
                     TRYFPEVVEAVLANLPEKCVVDGEIVLIGASGDRLDFEALQQRIHPAASRVAKLAAQT
                     PASFVAFDLLALGEDDLTARPMHERRALLEQALAGVEAPIHLTRATRDPQVAQEWFHQ
                     FEGAGLDGVIAKPLDGTYQQDKRVMLKIKHERTADCVVAGYRTHKTG"
BASE COUNT          529 a         1081 c         1154 g          543 t
ORIGIN      
        1 tctcgcgagc atgtcgcacg agctgcggac gcccctgaac gcagtgctcg gattctcgga
       61 ggtcctgctc gagcggatgt tcggtgagat caacgagaag caggaggact acctgcggga
      121 tatccacggc tcgggaaagc acctgctgga gctgctcaac gagatcctcg acctgtcgaa
      181 ggtcgaggcc ggccagatgg agctgcagtt caccgatctc gagattccag tcgctctcga
      241 gtacgccgtc tcgatgctca gagagcgtgc ctcggcccac tccatcgacc tgcgagtcga
      301 gcttggggaa ggcctggttc ctgtggaggt cgacgagctg cggttcaagc aggtcgtgct
      361 gaacctcgtc agcaacgccg tcaagttcac gccagacggc gggtccgtcg tcctccgcgc
      421 cgagcgggtc gacacggacc tgcaggtgtc ggtcgcggac acgggggtcg gaatcccggt
      481 cgaggaccgt gaacggatct tcgactcctt ccagcagggc ggtcggggag cgtcccggga
      541 ggagggcacg gggcttggcc tcacgctctc gcgcaggatc gtcgagctgc tgggcggccg
      601 gatgtggctg gagagcgagg tcgggcaggg cagcacgttc gggtttgcga taccccttcg
      661 acccacgagg ggcgaggtcc agcgggatgg tgacggaccg gcgctggcct ccatcgtggt
      721 gatcgaggac gatcgcccat cgttggacct gctgaccgcc tacctgtcgg gcgcgacact
      781 cagggtcacg accgcgcgcg atggccagtc gggcctggac gcggtccggc gcgtcagacc
      841 ctccgcagtg ttactggaca tcaggctgcc cggtctcgat gggtgggctg tgctggaggc
      901 ggtcaagtcg gagccggaga cgaaacacat cccggtcatc gtcctgtcga tcgtcgacga
      961 gcggtcgcgt ggggcggcct tgggcgcggc cgcttatctg gtgaagccgg tcagccgcga
     1021 cgagctgctc gcagcgctgg caaccgtcgg gattgacgtg tccacggcgg gctcagccgg
     1081 catcggccag gagacgtgac cgtcggcctc gtcaggcctt ggggcgcagc gtcatggaaa
     1141 tgctgttgat gcagtaacgc tgatccgtcg gggtgccgta accctcgccc tcgaagacgt
     1201 ggccgaggtg gctgccgcag gtggcgcagc gcacctccac gcgcttcatc cccatggccc
     1261 gatcctcgat gtactccacg ctgtcgccgg ccagcggtgc gtagaaggat ggccagccac
     1321 agtggctctc taacttggtc tcagacgtga acagctcggc gccacaggct cggcacgcat
     1381 aaacgccttc cgtggtggtg tcggtgtact cgcccacgaa cggccgctcg gtccctgcct
     1441 gacgcagcac gttgtactcg tcgcggctca gctcctgccg ccactgctct tcggtcttgg
     1501 ccacggggta ggtcttatcg ctgctcctca tgcccagatc aacaccaccg agcacgcatt
     1561 ggttcccgac taggctgccg gacatggcgg cgcaggcaac cgagctcgag gtccctggcg
     1621 gacccgacgg ctcgcgacgg gtccggatct ccagtccgga gaggctgatc tggccagacg
     1681 acggcattac caagctggac ctggcgcagt acgcgatcga cgtgtcggac ggcctcatgc
     1741 gcgcccttgg caaccggccg gtcaccttgc agcgcttccc cgacggcatc accggcgagg
     1801 agttctggac caagaacccg cccaagggca tgcccgactt catcaccccg gtgatgtgta
     1861 cgtacccgtc ggggcgcaag cacctccagg tcgtggtcga cgagcccgct gccgcggtct
     1921 gggccatgca gatgaacacc gtgacgttcc acccctggcc ggtgcgtacc agcaacgtgg
     1981 acaaccccga cgagctccgg atcgacctcg accctcagcc tggacgtggg taccaggacg
     2041 cggtcgaggc ggccctcgtg ctgcgcgacg tgctgtccga gctgggtctg accggttggg
     2101 ccaagacctc ggggaaccgc ggggtgcacg tgttcgtgcg ggtggcaccg acccacgagt
     2161 tcctcgaggt tcgccatggc gtcatcgcga tcgcccgcga gctggagcgc cgcctgcctg
     2221 agctcgtcac gacctcctgg tggaaggagg agcgcggcga gcgcgttttc gtcgacttca
     2281 accaggcctg tcgcgaccgc acgatcgcgt cggcctacag tccgcgaccg ttgcccggcg
     2341 cgccggtgag tatgccgctg gcctgggaga cgctgtcgag cgtgcgccca ggggacttca
     2401 ccgtgcggac ggtgcccggg atcgtggcgt cggacggcga cgcctgggct gggatcgacg
     2461 aggctgtcgg tgacctgtcg gcggcaatcg cctggtggga caaggacatt cacgagcgtg
     2521 ggctgggcga gctgaacttc ccccccgact acccgaagat gccgggggag ccgccccgcg
     2581 tgcagccgag caagcgtcgc aaggaccgct cggacgagga gtacctggcg cccaaggctg
     2641 aacgggatgc tgcctggggg cttgccgtca tccccccggt ggcgccgatg ctcgccaagc
     2701 ccgtcaaggg catcccgaac ggcgaatacc tgttcgagcc caaatgggac ggcttccggt
     2761 cggtgatctt ccgctcggga gaccgggtgg agatcggcag ccggaacgag aagccgatga
     2821 cccgctactt cccggaagtg gtcgaggccg tcttggccaa cctgcccgag aagtgtgtcg
     2881 tcgatggcga gatcgtcctg atcggtgcgt ctggggaccg gctcgacttc gaggctctac
     2941 agcagcggat ccacccggcg gccagccggg tcgccaagct cgcggcgcag acccccgcca
     3001 gcttcgtcgc gttcgatctg ctggctctcg gcgaggacga cctgaccgct cggccgatgc
     3061 acgagcgtcg ggcgttgctc gagcaggcgc tggccggggt cgaggcgccg atccacctca
     3121 ctcgtgccac ccgcgacccg caggtcgcgc aggagtggtt ccaccagttc gagggtgccg
     3181 ggctcgacgg ggtgatcgcc aagccgctgg acggtacgta ccagcaggac aagcgcgtca
     3241 tgctcaagat caagcatgag cggactgcgg actgcgtggt cgcgggctat cgcacgcaca
     3301 agacggg
//
LOCUS       DASYFY010000319         2931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1021932, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000319 DASYFY010000000
VERSION     DASYFY010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1021932"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1052
                     /locus_tag="VGN19_06450"
     CDS             <1..1052
                     /locus_tag="VGN19_06450"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEV7195560.1"
                     /translation="GGTGRYSRELVTALSRDIPHGWGITGWVARGALDLPSVPEVSSF
                     GLPSPVLSRLWERGVGPAPSGGVVHAPTLLVPPRRRGSQLVVTVHDTIPWTHPETLTP
                     RGVAFHRRMGARAARDAALIVTPTAAVAAQVREVLSPRAEVVVVPPGVSPLAAPDAQV
                     RQRMSERVPACPFVLFVGTAEPRKGLDVLVRALANAAAAGLALVVVGPPGWGDVDVRG
                     LAAAGGVSDRVTVLGRVTDAELAALYEQAAVLAMPSRAEGFGLPVIEAMSKRLPVVTS
                     DDPALVEVGAGATLVVPVGDPDALAVALAQVVGDGSLRLRLAENGLRRSSDFDWSVTA
                     SGLWEMYRSLSGGPH"
     gene            1070..2269
                     /locus_tag="VGN19_06455"
     CDS             1070..2269
                     /locus_tag="VGN19_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013839503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEV7195561.1"
                     /translation="MVDSTSLPPDRGGVGRYVDELIARLPSAGAEVFVVCQAADAGFY
                     NRLVGQDHVFAAPRWVKRPALRFVWEQLGLPALVRRLEPDVMHSPHYTLPIWLRSTGV
                     ARVVTLHDATFFTHPDLHNGIKAKFFASWTRLSVRVADALITPSEATRDELVTLLGAD
                     PSRFRVILHGVNADRFHRPSEHEIVAMREHLGIGDAPYLAFLGTLEPRKNLPALVRAY
                     AKVAPNYDVPPKLVLAGTPGWDAHLDEEIAAIPESLEVVKAGFLPDQLLAPFLGDAVV
                     VAYPSLGEGFGLPLAEAMACGAMVVTTRELSLPEVGGDAPIYAASPADHDLADALTEA
                     LDNPQWRAERGRLGVERAGALTWFGSAAEHLAVYQSVKPVLPASLTRQLRLRPKRARQ
                     AAPGPVR"
     gene            2281..>2931
                     /locus_tag="VGN19_06460"
     CDS             2281..>2931
                     /locus_tag="VGN19_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7195562.1"
                     /translation="MKILATGAAGFIGSNFVIRVREVRPDWRVTVLDSMTYAANLSSL
                     DPVLGEVDIVKGSVTDADLVDELVAAHDVVVHFAADSHNDNSLEDPWPFIDTNIIGTY
                     QLIQAVRRHGKRLHHISTDEVYGDLELDDPAKFTESTPMNPSSPYSASKASADLLVRA
                     WIRSFGLKATLSNCSNNYGPRQHPEKFIPRQITGIIDGIKPKLYGAGANVRDWIHVD"
BASE COUNT          406 a         1032 c          977 g          516 t
ORIGIN      
        1 cgggcggcac tgggcgttac tcgcgcgaac tcgttacggc cctgtcacga gacatccctc
       61 atggctgggg catcacgggc tgggtcgcca ggggtgcgct agacctgcca tcagtgcccg
      121 aggtctcctc gttcggattg cccagtcccg tgctgagccg gctctgggag cgcggcgtcg
      181 gcccagcgcc gtccgggggc gtggttcatg cgcccactct gctcgtaccg ccgcggcgtc
      241 gaggaagcca gctggtcgtg acggtccacg acaccatccc gtggacgcat cccgagacct
      301 tgacgccgcg cggggtggcc tttcatcgac gtatgggcgc acgcgcagct cgcgacgcgg
      361 ccctgatcgt gacccccacc gcggcagtcg ccgctcaggt gcgtgaggtg ctgagccctc
      421 gcgcggaggt cgtcgtcgtg ccccctggcg tcagtccgct tgccgcaccg gacgcacagg
      481 tgcgtcagcg gatgagcgag cgggtgccgg cctgcccctt cgtgctgttc gtcggcacgg
      541 ccgaaccgcg caagggtctg gacgtcctcg tgcgggccct cgcgaacgcc gctgcggccg
      601 gcctggctct tgtggtggtg ggaccgccgg gctggggtga cgtcgatgtt cgcgggctgg
      661 ctgcggcggg gggcgtctcg gatcgcgtca cggttctcgg ccgcgtcact gatgccgagc
      721 tggctgctct ctatgaacaa gccgcggttc tcgccatgcc ttctcgtgcc gagggcttcg
      781 gcctgccggt gatcgaggcc atgtccaaaa ggctgcccgt ggtcaccagc gatgaccccg
      841 ccctggtcga ggtcggggcg ggggcgaccc tcgtcgtgcc tgtcggtgac cccgatgccc
      901 ttgccgtcgc cctggcccag gtggtcggtg atgggtcgct ccgcctgcgc cttgctgaaa
      961 atgggctgag acggtcttcg gatttcgact ggtcggtgac ggcctcgggg ctttgggaga
     1021 tgtaccgttc gctgtcggga gggccacatt gagccatttg gtacgagtct tggttgacag
     1081 cacctcgctg ccgccagatc gaggtggcgt cggccgttat gttgacgagc tgatcgcccg
     1141 gctgccctct gccggtgccg aggtcttcgt cgtgtgccag gccgccgacg ccggtttcta
     1201 caaccggctg gtggggcagg accacgtctt cgcggctccg cgctgggtga agcggcccgc
     1261 gctgcggttc gtctgggagc agctgggcct gccggccctg gtccgcaggc tcgagcctga
     1321 cgtcatgcac tccccgcact acacgctgcc catctggctg cgcagcacag gcgtcgcgcg
     1381 ggtggtcacg ctgcacgacg cgacgttctt cacccaccca gatctccaca acggcatcaa
     1441 ggcgaagttc ttcgcctcgt ggacgcggtt gtcagtccgt gtggccgatg ccctgatcac
     1501 cccgagtgag gcgacgcgcg acgagctggt gactctcctc ggcgccgacc cgagccgttt
     1561 ccgggtgatc ctccacggcg tcaacgcgga ccgtttccat cgtccgagcg aacacgagat
     1621 cgtcgcgatg cgtgagcacc tcggtatcgg tgacgcgccc tacctcgcgt tcctcgggac
     1681 tctcgaaccc cgcaagaacc tgccggccct ggtgcgcgcg tacgcgaagg tcgcgccgaa
     1741 ctacgacgtc ccacccaagc tcgtcctcgc tgggacgccc gggtgggatg cccacctcga
     1801 cgaggagatc gccgccatcc cggagtcgct ggaggtcgtc aaagccggct tcctccccga
     1861 ccagctcctc gccccgttcc tcggtgacgc cgtcgttgtg gcgtacccga gtctgggcga
     1921 gggtttcggg ctgccgctgg ccgaggcgat ggcctgcggt gccatggtcg tcacgacccg
     1981 cgagctgtcg ctgccagagg tcggtggcga cgcgccgatc tatgccgcca gcccggccga
     2041 ccatgacctc gccgacgctc tcaccgaggc gctcgacaac ccgcagtggc gcgccgagcg
     2101 tggtcgtctt ggggtggaac gtgcgggtgc cctgacctgg ttcggctcgg ccgccgagca
     2161 cctggcggtg taccagtcgg tcaagccggt actgcccgct tcgctcaccc gacagctgcg
     2221 gcttcggccg aagcgagcgc gccaggccgc cccagggccg gtccgctagc ctcccctctc
     2281 gtgaagattc tcgccaccgg ggctgccggg ttcatcgggt ccaacttcgt catccgcgtc
     2341 cgcgaggttc gcccggactg gcgggtcacg gtcctcgact ccatgacgta tgccgcgaac
     2401 ctcagctcac tggacccggt cctgggagag gtcgacatcg tcaagggttc ggtgaccgac
     2461 gccgacctcg tcgacgagct ggtggcggcc cacgacgtgg tcgtgcactt cgccgccgac
     2521 tcgcacaacg acaactcgct cgaagacccc tggccgttca tcgacaccaa catcatcggg
     2581 acgtaccagc tgatccaggc ggtgcgtcgg cacggcaagc ggctgcacca catctcgacc
     2641 gacgaggtct acggggacct cgagctcgac gaccccgcga agttcaccga gtccaccccg
     2701 atgaatcctt ccagccccta ctcggcctca aaggcgagcg cggatctgtt ggtacgagcg
     2761 tggatccgct ccttcggact caaggccaca ctgtccaact gctcgaacaa ctacgggccg
     2821 cgccagcatc cggagaagtt catccctcgc cagatcaccg ggatcatcga cggcatcaag
     2881 cccaagctct atggcgcggg ggccaacgtc cgcgactgga tccacgtcga c
//
LOCUS       DASYFY010000320         5007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1285101, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000320 DASYFY010000000
VERSION     DASYFY010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5007
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1285101"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..117)
                     /locus_tag="VGN19_06465"
     CDS             complement(<1..117)
                     /locus_tag="VGN19_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015936453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEV7195563.1"
                     /translation="MSDTATPTASYLTQEAFDRLKAELDQLSGDGRTEIAKKI"
     gene            complement(313..681)
                     /locus_tag="VGN19_06470"
     CDS             complement(313..681)
                     /locus_tag="VGN19_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4307 domain-containing protein"
                     /protein_id="HEV7195564.1"
                     /translation="MPLPRPAPGTGKWWVVGIVGCTLGTALAIWLALANTLGQVTWTD
                     TGYKVVDDRSVRVDFDVDRAPGQAVTCRVRALDRTFGVVGVIDVPIPPTAERTVHHQI
                     VVRTASRAVTGVVDSCAPTG"
     gene            778..1716
                     /gene="mca"
                     /locus_tag="VGN19_06475"
     CDS             778..1716
                     /gene="mca"
                     /locus_tag="VGN19_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010126 - mycothiol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol conjugate amidase Mca"
                     /protein_id="HEV7195565.1"
                     /translation="MADRLRLMAVHAHPDDESSKGAATMARYVVEGRDVLVVSCTGGE
                     RGDVLNPNLKDDPHIARDLPRVRRQEMKRAQEILGVQHTWLGFVDSGLPEGDPLPPLP
                     DGCFALEPLEVSTEALVREIRRFRPHVMTTYDENGGYPHPDHIMCHRVSMAAFEAAGD
                     PAAYPHAGEPWQPLKIYYHQTFTKERIVAFHEALISLGEESPYAEWLENWGDRPVRTI
                     TTRVHCSDYFDQRDQALLAHATQVDPGGTWFRVPRDLQATAWPTEDYEAALSYVPVEA
                     DEDDLFAGISDAATGDRLATDRDLNIAYDGRQETSV"
     gene            1713..2057
                     /locus_tag="VGN19_06480"
     CDS             1713..2057
                     /locus_tag="VGN19_06480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195566.1"
                     /translation="MNGAPSTTIGPGIWGFVAFFVLAIALYLLMRNMNARMRRMSYRA
                     EERQREAEAELQGKGERTGNGTGEGNGTGEGNGTGRLDGSAGSADETGRAEQTGGPGS
                     APTDPPAGPPSS"
     gene            2086..2466
                     /locus_tag="VGN19_06485"
     CDS             2086..2466
                     /locus_tag="VGN19_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018773589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195567.1"
                     /translation="MSGRIVHFELPYDDSERAGAFYGEIFGWDVQSYPGMEYSMVSTG
                     PSGDQGPTEPGYINGGMGPRAETFQGPTVVVDVDDIDATLAKITERGGSVVATRRPVA
                     EMGWTAYFTDPEGNVVGLWETKRG"
     gene            complement(2511..3203)
                     /locus_tag="VGN19_06490"
     CDS             complement(2511..3203)
                     /locus_tag="VGN19_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010149212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEV7195568.1"
                     /translation="MTTTPARSEHGPLETVVAAVKPHLRGWLHAGMVPLALAAGIVLI
                     ALAPTPTARIAAAVFSVTAWLLFGTSAVYHRGNWSPRVAGVLKRMDHSNIFLIIAGTY
                     TPFALLLPSNDARTMLLIVWIGAVAGVLFRVLWVGAPRWLYTPVYVALGWVAVFYLRP
                     LLHFGGPAIVTLIAVGGLLYTAGAVVYGIKRPNPSPRWFGFHEIFHTLTVAAFTVHYI
                     AASMSVYGAHSA"
     gene            3343..4104
                     /locus_tag="VGN19_06495"
     CDS             3343..4104
                     /locus_tag="VGN19_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEV7195569.1"
                     /translation="MALSDILYAAYERRLRRQLSTATLPRHVGVMLDGNRRWAAERGH
                     GTKEGHQAGADNIANFLEWCEEARVEVVTLWLLSTDNLSRPAAEVVPLLSIIETTVSD
                     LAATKRWRINPVGSLDLLPAETARRLKESADLTEDVQGITVNVAVGYGGRQEITDAVR
                     SMLMAHAAHGTTIEELADSLQVEHIAEHLYTKGQPDPDLVIRTSGEQRLSGFLLWQSA
                     HSEFYFCEAYWPDFRHVDFLRALRAYSERNRRFGG"
     gene            4390..>5007
                     /locus_tag="VGN19_06500"
     CDS             4390..>5007
                     /locus_tag="VGN19_06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEV7195570.1"
                     /translation="MASNASNRDTTSGSSTSPASTRAKSRGAQAADSRRTFVLDTSVL
                     LSDPRAMLRFKEHEVVLPVVVVTELEAKRHHPELGYFARQALRLLDDLRISQGRLDAP
                     VVVGEAGGTLRVELNHTDPSSLPAGFRLGDNDTRILAVAKNLASEGFEITVVSKDLPM
                     RVKASAVGLDAEEYRAELAIDSGWTGMAELDVSVAEMDALYEHGRL"
BASE COUNT          842 a         1681 c         1780 g          704 t
ORIGIN      
        1 gatcttcttg gcgatctccg tacggccgtc gccggagagc tggtccagct cagccttcag
       61 tcggtcgaag gcctcctggg tcaggtagct cgcggtgggg gtcgcggtgt cgctcacgtc
      121 gtactccttg attgggttcc ccggggcgcg gctgcgccaa agagaggggg ttacacgtaa
      181 cggtccggac cgaccacgct cgcgtcgtca aggtccagac cgctcggtga aaggacgatt
      241 ctacagcccg gcgcccgaag cggtccattt tgtgatactc gaaccgtggc cgcctcacgg
      301 ggggaggggc tctcaccccg tgggggcaca cgagtccacc acgccggtca cggcgcggga
      361 ggcggtgcgg accacgatct ggtggtgcac agtgcgctcc gcggtggggg gaatcgggac
      421 gtcgatcacg ccgaccacgc cgaacgtccg gtccaaggcc cgcacccggc acgtcactgc
      481 ctgaccgggg gcccggtcga catcgaagtc cacgcgcacc gaacggtcgt cgacgacctt
      541 gtagcccgtg tccgtccagg tgacctgacc cagggtgttg gccagcgcca gccagatggc
      601 cagcgcagtc ccgagcgtgc agccgacgat gcccacgacc caccacttcc cggtacctgg
      661 ggcggggcgg gggagcggca tggagtagcc cttctggctg gtgagaggat gtccaacggt
      721 tcggtgcctg ccacagcagg tactccattg tccgtgatgg cgagagaggt tgagcaggtg
      781 gctgaccggt tgcggctcat ggcagtgcac gcgcaccccg acgacgagtc gagcaagggg
      841 gcggccacca tggccaggta tgtcgtcgag gggcgcgacg tgctcgtggt gtcctgcacc
      901 ggtggcgagc gcggggacgt gctcaacccc aacctcaagg acgatcccca catcgcccgc
      961 gacctgcctc gcgttcggcg ccaggagatg aagcgcgcgc aggagattct cggggtccag
     1021 cacacctggt tggggttcgt ggactctggg ctgcccgagg gcgacccgct gcccccgttg
     1081 cccgacggct gttttgcgct ggagccgctc gaggtcagca ccgaggccct ggtccgggag
     1141 atccgccggt tccgcccgca cgtcatgacg acgtacgacg agaacggcgg ctacccccac
     1201 cccgaccaca tcatgtgcca ccgggtgtcg atggcggcgt tcgaggcggc cggcgacccg
     1261 gcggcatacc cgcatgctgg tgagccctgg cagccactga agatctacta ccaccagacc
     1321 ttcacgaagg aacggatcgt ggccttccac gaggcgctca tctcgctcgg cgaggagagc
     1381 ccgtatgccg agtggctgga gaactggggc gaccgcccgg tgcggacgat caccacccgg
     1441 gtgcactgct cggactactt cgaccagcgc gaccaggcgc tgctcgcgca cgccacgcag
     1501 gtcgacccgg ggggcacctg gttccgggtg ccgcgggacc tccaggcgac ggcgtggccc
     1561 accgaggact acgaggcggc gctgtcctac gttccggtcg aggccgacga ggacgacctg
     1621 ttcgccggca tctccgacgc tgcgacgggc gaccggctgg cgaccgaccg cgacctgaac
     1681 atcgcctacg acggacgtca ggagaccagc gtatgaacgg cgctccgtcc acgaccatcg
     1741 ggccgggaat ctggggcttc gtcgccttct tcgtgctggc gattgcgctg tatctcttga
     1801 tgcgcaacat gaacgcccga atgcgtcgga tgtcctaccg cgccgaggag cggcagcgcg
     1861 aggcggaagc cgagcttcaa ggcaagggcg agcgcacggg caacggcact ggcgagggca
     1921 acggcacggg cgagggcaac ggcacgggcc gactcgacgg atcggccggt tccgctgacg
     1981 agacgggacg tgcggagcag actggtggtc cgggcagcgc accgacggac ccacccgccg
     2041 gcccaccgag cagctagccc gccacagcca ccaggaggtc gcgtcatgag cggtcggatc
     2101 gtccacttcg agcttcccta cgacgacagt gagcgcgccg gcgccttcta tggcgagatc
     2161 ttcggctggg acgtgcagtc gtacccgggc atggagtact cgatggtctc caccggcccc
     2221 agcggtgacc aggggccgac cgagccgggc tacatcaacg gcggcatggg cccgcgcgcg
     2281 gaaaccttcc aagggccgac cgtggtcgtc gatgtcgacg acatcgacgc gaccttggcg
     2341 aagatcaccg agcgaggcgg cagtgtcgtg gccaccaggc gacccgtcgc cgagatgggc
     2401 tggacggcct acttcaccga ccccgagggc aacgtggtcg gcctgtggga gaccaagcgc
     2461 gggtaagggt caggcgctgc gcgcgccgta gacgctcgta gccctggacg tcaggcgctg
     2521 tgcgcgccgt agacgctcat cgacgcggcg atgtagtgca cggtgaaggc cgccacggtc
     2581 agggtgtgga agatctcgtg gaagccgaac catcgcggtg aggggttggg ccgcttgatg
     2641 ccgtacacga cggcaccggc ggtgtagagc aggccgccca ccgcgatcag ggtcacgatg
     2701 gccgggccac cgaagtgcag cagcggccgc aggtagaaca ccgcgaccca gccgagggcg
     2761 acgtacacgg gggtgtagag ccaccgcgga gcgcccaccc acaggacccg gaacagcacg
     2821 cccgcgacag caccgatcca cacgatgagc agcatggttc gggcgtcgtt gctcggcagg
     2881 agcagcgcga acggggtgta cgtgccggcg atgatcagga agatgttgga gtggtccatc
     2941 cgcttgagca cgcccgcgac ccgcggggac cagttgccac ggtgatagac cgcagaggtc
     3001 ccgaacagca gccaggcggt caccgagaag acggcggccg cgatgcgggc ggtcggggtg
     3061 ggggccagag cgatgagcac gatgccagcg gcgagcgcca gcgggaccat gccggcgtgc
     3121 agccagccac gcaggtgggg cttgacggca gcgacaacgg tctcgagggg cccgtgctct
     3181 gagcgggcgg gagtcgtggt catggagcga gtgtaaccta cggttgcgta agttactcat
     3241 ccgtagggtt gtgagccccg actcaggagc cccccacggg cctgtgaggt gaggcgcgcg
     3301 ggcggctcac gcttcctggc cgccgggggt agcgttgggg ccgtggccct gtccgacatc
     3361 ctgtatgccg cgtacgagcg gcggctgcgg cgtcagctct ccaccgcgac gctgccgcga
     3421 cacgtcggcg tgatgctgga tggcaaccgt cgctgggccg ccgagcgggg gcacggcacc
     3481 aaggaaggcc atcaggccgg cgccgacaac atcgccaact tcctggagtg gtgcgaggag
     3541 gcccgcgtcg aggtggtcac cctgtggctg ctgtcgaccg acaacctgag caggcctgcg
     3601 gcagaggttg tgcccctgct gtccatcatc gagaccacag tgtccgatct cgccgcaacc
     3661 aagcgctggc ggatcaaccc ggtcggctcg ctggacctgc tgcccgccga gacggcccga
     3721 cgcctgaaag agagcgccga cctgaccgag gacgtccagg ggatcaccgt gaacgtcgcc
     3781 gtcgggtacg gaggccgcca ggagatcacc gacgccgtgc gctcgatgct gatggcgcac
     3841 gccgcccatg gcacgaccat cgaggagctc gccgactcgc tccaggtcga gcacatcgcg
     3901 gagcacctct acaccaaagg gcagcccgac cccgacctgg tcatccgcac ctcgggggag
     3961 cagcggctct ccgggttcct gctgtggcag agcgcccaca gcgagttcta cttctgtgag
     4021 gcgtactggc cggacttccg ccacgtcgac ttcctacgcg cgctgcgggc ctactccgag
     4081 cgcaaccggc gcttcggcgg ctaggcgggc tgacggccta ccccgctcgg gtgaggcggg
     4141 catccgacgg acgggtgaac tctgggcgac acaccgcgag gttgcccaga gcgaggtcag
     4201 aggggacgta ccgtcggcag tgacgcagag cgcccgccct gcgttcggga ggcccacctg
     4261 atggagcgat tcgagctccg agcggagggc cggcaccggt cccaccgcac cacgtgggca
     4321 cggtcccggc acctcggtcg cgagtaggcg cactgcgccg gctgcggcgc gctgtgccaa
     4381 ggagagacat tggcctcgaa cgcttcgaac agggacacca ccagcggctc ctcgaccagc
     4441 ccggcgagca cccgcgcgaa atctcgcggc gcacaggcgg ccgacagccg tcgcaccttc
     4501 gtcctcgaca cctccgtgct cctgtccgac ccgcgcgcga tgctgcggtt caaggagcac
     4561 gaggtcgtcc ttccggtggt ggtcgtcacc gagctcgagg ccaagcgcca ccacccggag
     4621 ctggggtact tcgccaggca ggcattgcgg ctgctcgacg acctgcggat cagccagggc
     4681 cggctcgacg cccccgtagt ggtgggtgag gccggcggca cgcttcgggt cgagctcaac
     4741 cacaccgacc cgagctccct gcccgccggc ttccgcctcg gggacaacga cacccggatc
     4801 ctggccgtcg cgaagaacct cgccagtgag ggcttcgaga tcacggtggt gagcaaggac
     4861 ctgcccatgc gggtcaaggc ctctgccgtc ggactcgatg ccgaggagta tcgggccgag
     4921 ctcgcgatcg actcgggttg gaccggcatg gccgagctcg atgtcagcgt cgccgagatg
     4981 gacgccctat acgaacatgg gcgactc
//
LOCUS       DASYFY010000321         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1861757, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000321 DASYFY010000000
VERSION     DASYFY010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1861757"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VGN19_06505"
     CDS             <1..448
                     /locus_tag="VGN19_06505"
                     /inference="COORDINATES: protein motif:HMM:NF019106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NUMOD4 motif-containing HNH endonuclease"
                     /protein_id="HEV7195571.1"
                     /translation="VSNLGRVRSLDRITDRGRKWRGRIMSPAPMGPSGYLVVTLWRDG
                     KQRTALVHRLVLTAFVGPSDFEVRHKYGDPADNRLAHLAWGTHSENQFDQVAHGTHAN
                     ASKDECPAGHAYDEANTYVYPGRAHRGCRACRRSYARNYQRKGVAA"
     gene            445..1029
                     /locus_tag="VGN19_06510"
     CDS             445..1029
                     /locus_tag="VGN19_06510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195572.1"
                     /translation="MTGFDMTESIAPKSDQANAEDFLTGPRTVTIVEVRKGSVEQPVD
                     VVLAEFGPGRPFKPSKTVRRIMVAAWGPDAATYAGHRMTLYRDPTVRFGGQDVGGIRV
                     SHMSGITKPLKLALAVSKGKRSQYVVDPLPDAPTPAQAAPTAEELIAEAEKAATNDDL
                     NRIARSAAHLTGDDLAAVREIVTARREDLKDAES"
     gene            1026..1397
                     /locus_tag="VGN19_06515"
     CDS             1026..1397
                     /locus_tag="VGN19_06515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195573.1"
                     /translation="MSAARAKGTRWESTLVTFLRDHGFTWADRIPLSGSKDRCDVTIG
                     PGGPVIEGKNLKQAEWGKGLDEANKGAANARAPFGVLWAHRRGKGSPGDGFVVMDGHT
                     FVKLLHEAGYAWEPPLPERAA"
     gene            1394..1576
                     /locus_tag="VGN19_06520"
     CDS             1394..1576
                     /locus_tag="VGN19_06520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195574.1"
                     /translation="MTHFVPPRLPVGPSTSITKRQAEVLHLAQLGATARAHATALVYS
                     GLTVEIRDVHNRWSAA"
BASE COUNT          295 a          613 c          536 g          228 t
ORIGIN      
        1 ggtctcgaac ctcgggcgcg tccggtcgct ggacaggatc accgacaggg gccgcaagtg
       61 gcgcgggcgg atcatgagtc ccgcacccat gggtccgagt ggctacctcg tggtgaccct
      121 gtggcgcgac ggaaagcagc gcactgcgct ggtccaccga ctcgtcctga ccgcgttcgt
      181 gggcccctcc gatttcgagg tgcggcacaa gtacggcgat ccggcagaca accgccttgc
      241 gcacctggcg tgggggaccc actcggagaa ccagttcgac caggtagccc acgggacgca
      301 cgcaaacgcc tccaaggacg agtgtccggc cggtcacgcc tacgacgagg ccaatacata
      361 cgtctaccca gggcgcgctc atcgagggtg tcgcgcttgt cgacgctcct acgcgcgcaa
      421 ctaccagcgc aagggagtgg cagcgtgacc gggttcgata tgaccgagag catcgcgccg
      481 aagagcgatc aggcaaacgc cgaagatttc ctgaccggtc ctcgcaccgt gaccatcgtc
      541 gaggttcgca agggctcggt tgagcagcct gttgatgtcg tgctcgcaga gttcggtccc
      601 ggccgaccgt tcaagcccag caagaccgtc cgccgcatca tggtcgccgc ctggggacct
      661 gacgcagcca cctacgccgg ccaccgcatg accctgtacc gggacccgac ggttcgcttc
      721 ggcgggcagg acgtcggcgg gattcgcgtc tcgcacatga gtggcatcac caagccgctc
      781 aagctggcac tggcggtgtc caagggcaag cggtctcagt acgtcgtgga ccccctgcct
      841 gacgctccta cgcccgctca ggccgcaccg accgccgagg aactcatcgc cgaagcggag
      901 aaggccgcga ccaacgacga cctcaatcgc atcgcacggt ccgccgcaca cctgaccggc
      961 gatgacctgg ccgccgtgcg cgagatcgtc accgcccgcc gcgaagacct caaggacgcg
     1021 gagtcgtgag cgccgcccgt gcgaagggca cccgctggga gtccaccctc gtcaccttcc
     1081 tccgcgacca cggcttcacc tgggccgacc gcatccccct gtccggctcc aaggaccgct
     1141 gcgacgtgac gatcgggccg ggcggcccag tgatcgaggg caagaacctc aagcaagccg
     1201 agtggggcaa ggggctcgac gaggccaaca agggcgccgc caacgcccgc gccccgttcg
     1261 gcgtgctgtg ggcgcaccga cgcggcaagg gctcgcctgg cgacggcttc gtggtcatgg
     1321 acggccacac cttcgtcaag ctgcttcacg aagccggcta cgcctgggag ccaccactgc
     1381 cggagcgtgc agcatgaccc acttcgtccc accccgcctg cccgtcggcc cgtccacgtc
     1441 gatcaccaag cgccaggccg aggtgctgca cctggcccag ctcggagcga cagcccgggc
     1501 acacgccacc gccctcgtct actccggcct caccgtcgag atccgcgacg tccacaaccg
     1561 gtggagcgcg gcatgaccga gccgatccgc gtggacgaca ccgctgtctg ccgtcagccc
     1621 ggggccaagc cggacgactg gttccccacc gacatgaacg cgtcgcagcg gg
//
LOCUS       DASYFY010000322         1994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_653953, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000322 DASYFY010000000
VERSION     DASYFY010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653953"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..252)
                     /locus_tag="VGN19_06525"
     CDS             complement(46..252)
                     /locus_tag="VGN19_06525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195575.1"
                     /translation="MEEVREVVLERPYWRTHGRADTILFYGQTHAGRCLFVVAIAQDD
                     EEAFIVTARDMTDAEKKTFRRKAR"
     gene            477..1409
                     /gene="mshD"
                     /locus_tag="VGN19_06530"
     CDS             477..1409
                     /gene="mshD"
                     /locus_tag="VGN19_06530"
                     /EC_number="2.3.1.189"
                     /inference="COORDINATES: protein motif:HMM:TIGR03448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035447 - mycothiol synthase activity
                     [Evidence IEA];
                     GO_process: GO:0010125 - mycothiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol synthase"
                     /protein_id="HEV7195576.1"
                     /translation="MATGAGYELSEHDRLDDATRAEVEQLAGSAAAYDGVDPLGEHTL
                     LALTGDGARHLLARADGTLVGYGQLDGAGSVAELVVSPEFRGRGIGRALLEHLLERAP
                     GLGIWAHGDLPGARALASSLGLVRSRGLLQMRRSLDEPLPDVDLPAGFALRSFLPGLD
                     EQEWLSVNARAFTDLPDQGGWTTSDLHQRMAAPWFDPAGFLIATTAMDPPSQGERIAG
                     FHWTKIHDRVRSTGPDAHEHERIGEVYVVGIDPSQQGHGLGRALTLAGLHRLKAAGLS
                     TVMLYVDDANAAAVGLYRALGFATWQTDVEYRRG"
     gene            1458..>1994
                     /locus_tag="VGN19_06535"
     CDS             1458..>1994
                     /locus_tag="VGN19_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195577.1"
                     /translation="MTVHEQGTEVTFTPPVTTPLPIETDSEEYDEPLPADRFLDRELS
                     WLAFNQRVLELTEDPDLPLLERARFLAIFASNLDEFFMVRVAGLKRRMATGIAVRAAS
                     GLMPREVLEGIWRRGHELMQRHADVFHHQVRPALQEQGIELLRWESCSEEERVRLSSL
                     FRDKVFPVLTPLAVDPAHP"
BASE COUNT          296 a          704 c          683 g          311 t
ORIGIN      
        1 gctcggcggt ggggcggggt aggtgctcgg tacgcttggt catcttcatc gtgccttcct
       61 ccggaaggtc ttcttctcgg cgtcagtcat gtcgcgggcc gtcacgatga acgcctcttc
      121 atcgtcctga gcgatcgcca cgacgaacag gcaacgcccc gcatgggttt ggccatagaa
      181 caagatcgtg tctgcacgac cgtgggtgcg ccagtacggg cgttcgagga cgacctccct
      241 gacttcttcc aaggtgaccc cgtgagcggc gaggtggtcg gcggaccaat cgctgtcccg
      301 gacggccctg aacacactag ccaatgcaat gcaatcgcaa tgcaaacgca agcggcaggc
      361 gggctcccgt gaaggcgacc ccaagttgtt cggtttgcat gaggagcccc tcaagcaggc
      421 gactcccagg cactgcccgt cagccgccgc gacagcgcgc ggttaggctc ccgcccgtgg
      481 cgactggcgc ggggtacgag ctctccgagc acgatcggct cgacgacgcc acccgcgccg
      541 aggtcgagca gctcgccggg tcggcggccg cgtacgacgg cgtcgaccca ctcggggagc
      601 acaccctgct ggccctgacc ggcgatggtg cccggcacct gttggcccga gcagacggca
      661 ccctcgtcgg atacggccag ctcgacgggg ccgggtccgt ggccgagctg gtggtctccc
      721 ccgagttccg cggtcgcggc atcgggcggg cgttgctgga gcacctgctg gagcgcgcac
      781 ccgggctcgg gatctgggcg cacggcgacc tgcccggggc acgagcgctg gccagcagtc
      841 tcgggctcgt acgcagccgg ggtctactgc agatgcgccg ctcgctggac gagccgctgc
      901 ccgatgtcga tctgcccgcc ggcttcgcgc tgcgttcgtt cctgccgggg ctcgacgagc
      961 aggagtggct gtccgtcaac gcccgcgcgt tcaccgacct gcccgaccag ggcggctgga
     1021 cgacgtcgga cctgcaccag cgcatggccg cgccgtggtt cgaccccgcc ggcttcctca
     1081 tcgccaccac cgcgatggac ccgccgtcgc agggcgaacg catcgccggg ttccactgga
     1141 ccaagatcca cgaccgggtg cgcagcaccg ggcccgatgc tcatgagcac gaacgcatcg
     1201 gcgaggtcta cgtcgtgggg atagatccgt cccagcaggg ccacggcctg ggtcgcgccc
     1261 tgacgctggc agggctgcac cgcctaaagg cagccggcct ctcgacggtg atgctgtacg
     1321 tggacgacgc gaacgccgca gcggtcgggc tctaccgcgc gctggggttc gcgacctggc
     1381 agacggacgt ggagtaccga aggggctgat gggcgggcgc catgccccca gctcacgggt
     1441 ctggcatcgt tcctgtcatg acggtccacg agcaaggcac cgaggtcacg ttcactcccc
     1501 ccgtgaccac cccgctcccg atcgagacgg actccgagga gtacgacgaa ccgctccccg
     1561 cggaccggtt cctggaccgt gagctgtcat ggctggcctt caaccagcgc gtcctcgagc
     1621 tgaccgagga cccggacctg ccgctgctgg agcgcgccag gttccttgcg atcttcgcca
     1681 gcaaccttga cgagttcttc atggtgcgcg tggccggcct caagcgccgg atggcgacgg
     1741 gcatcgcggt gcgcgcggcg agcgggctca tgccgcgcga ggtgctcgag ggcatctggc
     1801 gccgcggcca cgagctcatg cagcgtcacg ccgacgtgtt ccaccaccag gtacgtcccg
     1861 cgctgcagga gcagggcatc gagctgctgc ggtgggagtc ctgctcggag gaggagcgcg
     1921 tccggctctc ctccctcttc cgcgacaagg tctttccggt cctgacacca ctggccgtgg
     1981 atccggccca cccg
//
LOCUS       DASYFY010000323         3709 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1810620, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000323 DASYFY010000000
VERSION     DASYFY010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1810620"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VGN19_06540"
     CDS             complement(<1..348)
                     /locus_tag="VGN19_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195578.1"
                     /translation="MRSPAPKALLATASVAVALAAADTYVVVLALTDMMTGVGLGVDA
                     LQKATPIISGFLLGYIAVLPLIGRLADLVARQRILVACLCIFALGSAITALAVELPVL
                     VTGRVLQGVGGGGL"
     gene            complement(329..1042)
                     /locus_tag="VGN19_06545"
     CDS             complement(329..1042)
                     /locus_tag="VGN19_06545"
                     /inference="COORDINATES: protein motif:HMM:NF018822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LppX_LprAFG lipoprotein"
                     /protein_id="HEV7195579.1"
                     /translation="MSVRKRAVLRRLAVAGVAALATLTVVGCSNSAAPAKQVPPAQRL
                     ATARQRLEQSPAVSLSVESSGLPGKAVGVSGGRGTGLFNPPSFKGTLNATVSGVTGTV
                     DVIAVDKDVYMKFFTPGYIKIDPKTYGAPNPAQLFSTQTGITSLIGRTAHLAAGPSVR
                     DGADVLSTITGTLPGSAVADLLVIGERTGTFDVTYGLTDPGGDLRSVVLKGPFYAGST
                     STYTLRVQRLAQPVAITRP"
     gene            complement(1073..2755)
                     /locus_tag="VGN19_06550"
     CDS             complement(1073..2755)
                     /locus_tag="VGN19_06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013118438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family protein"
                     /protein_id="HEV7195580.1"
                     /translation="MRITDTSDQWWKTAVFYCLHVETFYDSDGDGVGDLAGLAQRIDY
                     LAELGVTCLWLMPIYPTPGRDDGYDVTDLLGVDPHIGDHGHLVEIVRTAKDRGLRVVL
                     DVVVNHTSDQHPWFKAARRSKDNPFRDYYVWRSDPPPDTSDQVAFPDKEDSIWAKDDA
                     TGEWYLHHFYSYQPDLNIANPAVRDEIDRALGFWLQLGFDGFRVDAVPFFVEDVETLA
                     ESASHPEVPADPHQHLRDLRAFVNRRRGNAILLGEVNVSHEQQRKYFGGDAGDELHMM
                     FDFIGMQNTYLSMARRDAGPLVTALQERPVIHPSCQWATFLRNHDELTLDKLTDEEKQ
                     EVFAAFGPEPEEQIYGRGLKRRLPTMLGGDPRRVRMAYSLLFALPGTPTLFYGEEIGM
                     GEDLEAEGRMAVRTPMQWSDGRNGGFSTARPSSLVARMTPGGYGPDHVNVADQRRDPD
                     SLWTFMHGLIRAYRACPELGWGKFEVLEQPLAQVLAHRSSIDDAAVVALHNLGPEPVT
                     VEVQAADEAVGLSDLLRSEDLVADDHGRVTLALEGYGYRWLRVHPAGSARLP"
     gene            complement(2758..3201)
                     /locus_tag="VGN19_06555"
     CDS             complement(2758..3201)
                     /locus_tag="VGN19_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017887957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195581.1"
                     /translation="MGSAAGGIDRRPEGVSDATVAAAGKVSEAFECIEEVRGKLYAAH
                     RLVGTADLALGDAVDLLRAAGHHELADTVDREMVGRNVLSGRWTFQVIEEFDAGYYAD
                     FRRIQKLVCDELMGGRPHVYEAEMKAARRTPGRPGHEATPSEVGE"
     gene            complement(3218..>3709)
                     /locus_tag="VGN19_06560"
     CDS             complement(3218..>3709)
                     /locus_tag="VGN19_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013115793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7195582.1"
                     /translation="GRLTDGQGRTVDFRNVILVMTSNLGSQFLVDPTMDDAVKREAVM
                     GLVRSSFKPEFLNRLDEIVIFDPLTSTELGHIVELQVRELASRLHDRRITLEVTEAAR
                     EWLAITGYDPAYGARPLRRLVQKEIGDRLAKAVLSGAVHDGQTVLVDLDEVADLLVVL
                     PRA"
BASE COUNT          587 a         1248 c         1289 g          585 t
ORIGIN      
        1 caacccaccg ccacccaccc cttgcagcac tctgccggtg accagcaccg ggagctcgac
       61 ggcgagggcc gtgatggccg agcccagcgc gaagatgcac aggcaggcga ccaggatccg
      121 ttgccgggca acaagatcgg cgagacgtcc gatgaggggc aggacggcga tgtagccgag
      181 caggaagccc gagatgatgg gcgtggcctt ctgcagtgcg tcgacgccga gaccgacgcc
      241 ggtcatcatg tcggtgagcg cgaggacgac cacgtaggtg tccgctgcgg caagggcgac
      301 ggccacggag gccgtggcca gcagcgcctt aggggcgggt gatcgcaacg ggctgggcca
      361 gcctctgcac gcgcagggtg taggtcgagg tggacccggc atagaagggg cccttgagca
      421 ccacgctgcg caggtcaccg ccgggatcgg tgagcccata ggtgacgtcg aaggtgcccg
      481 tgcgctcacc gatgacgagc aggtccgcga cggcgctgcc gggcaaggtc ccggtaatgg
      541 tgctcaggac atccgcgccg tcacgcaccg agggaccagc cgcgagatga gcagtccggc
      601 cgatcagact ggtgatcccc gtctgggtgc tgaacagctg tgcggggttc ggcgccccgt
      661 aggtcttggg gtcgatcttg atgtagccgg gcgtgaagaa cttcatgtac acgtccttgt
      721 cgacggcgat cacgtcgacg gtccccgtga cgccggacac ggtggcgttc agcgttccct
      781 tgaacgacgg cgggttgaac agtcccgtcc cccgaccacc ggagaccccg accgctttgc
      841 ccggcaaccc cgacgactcg acggagaggc tgaccgccgg gctctgctcg agccgctggc
      901 gtgccgtggc gagccgttgg gccggtggca cctgcttcgc gggggccgcg ctgttggagc
      961 aacccaccac cgtcagcgtg gccagcgccg cgacccctgc gaccgcaagc cttcttagaa
     1021 ccgcgcgctt cctgactgac atggcaccac ggtagttgtc gggggcgtcg cctcagggaa
     1081 ggcgggccga tcccgctggg tgcacccgca gccagcggta gccgtagccc tccagggcga
     1141 gcgtcacccg gccgtggtcg tccgcgacga ggtcctcgga cctgagcagg tcactgagtc
     1201 ccaccgcctc gtcggcggcc tgcacctcga cggtgaccgg ctccgggccc aggttgtgca
     1261 gggccacgac cgccgcgtcg tcgatcgagc tgcgatgggc cagcacctgg gccaacggct
     1321 gctccagcac ctcgaacttg ccccacccca gctcgggaca ggcgcgatag gcgcggatga
     1381 ggccgtgcat gaaggtccac aacgagtcgg gatcgcgacg ctggtcggcg acgttgacat
     1441 ggtcggggcc atagccaccc ggcgtcatgc gcgccacgag actgctgggc ctggcggtgg
     1501 agaaaccgcc attgcgtccg tcggaccact gcatcggcgt gcggacggcc atgcgaccct
     1561 cggcctcgag gtcctcgccc atgccgatct cctcgccgta gaagagcgtg ggcgtgccgg
     1621 gcagggcgaa gagaaggctg taggccatcc ggacccgccg agggtcaccg cccagcatgg
     1681 tgggcagtcg ccgcttgagc cccctcccgt agatctgctc ctcaggctcg ggtccgaagg
     1741 cagcgaagac ctcctgcttc tcctcgtcgg tcagcttgtc gagggtcagc tcatcgtggt
     1801 tgcgcaggaa cgtcgcccac tggcacgagg ggtggatcac cgggcgctcc tgcagcgccg
     1861 tgacgagcgg accagcatca cggcgtgcca tggacaggta ggtgttctgc atgccgatga
     1921 agtcgaacat catgtgcagc tcgtctccgg cgtcaccacc gaagtacttc ctctgctgct
     1981 cgtgcgacac gttcacctcg ccgagcagga tcgcgttgcc ccggcggcgg ttgacgaagg
     2041 cacgcaggtc gcgcaggtgc tggtgcgggt cggcgggcac ctcgggatgg gacgcgctct
     2101 cggccagcgt ctcgacgtcc tcgacgaaga acggcacggc atccacgcgg aacccgtcga
     2161 agcccagctg cagccagaag ccgagggctc ggtcgatctc gtcgcgcacc gcgggattcg
     2221 cgatattgag atccggttgg taggagtaga agtgatgcag gtaccactca cccgtcgcgt
     2281 cgtccttggc ccagatgctg tcctccttgt cggggaaggc gacctggtcg ctggtgtccg
     2341 ggggcgggtc ggaccgccac acgtagtagt cgcggaacgg gttgtccttg ctgcgtcggg
     2401 cggccttgaa ccacgggtgc tggtcactgg tgtggttgac gacgacatcc aggacgacgc
     2461 gcaggccgcg gtccttggcg gtcctgacga tctcgacgag atggccgtgg tcgccgatgt
     2521 gcgggtcgac gccaagcagg tccgtcacgt cgtagccgtc gtcgcggcca ggcgtggggt
     2581 agatgggcat caaccacagg caggtgacgc ccagctcggc gaggtagtcg atccgctgcg
     2641 ccagacccgc caggtcgccg acgccatcgc cgtcggagtc gtagaacgtc tcgacgtgca
     2701 ggcagtagaa gacggccgtc ttccaccact ggtcgctcgt gtcggtgatt cgcacgacta
     2761 ctcccccact tcgctgggag tcgcctcgtg gccagggcgt ccaggggtac gccgggcggc
     2821 cttcatctcc gcctcgtaga cgtgggggcg gccgcccatg agctcgtcgc acaccagctt
     2881 ctggatccga cggaagtcgg cgtagtaccc ggcgtcgaac tcctcgatga cctggaacgt
     2941 ccaccgcccc gagagcacgt tgcgcccgac catctcgcgg tcgaccgtgt cggcgagctc
     3001 atggtgacct gctgcccgca gcaggtccac ggcgtcgccg agcgccaggt cggccgtgcc
     3061 gacgaggcgg tgcgcggcat acagctttcc gcgcacctcc tcgatgcact cgaacgcctc
     3121 gctgaccttg ccagccgccg cgaccgtggc gtcactgacg ccttcgggcc ggcggtcgat
     3181 tcctcccgca gcactcccca tggcggccag tgtggcctca ggcgcgcggt agcaccacca
     3241 gcaggtcggc tacttcatcg aggtccacga ggacggtctg gccgtcatgc accgcgcccg
     3301 acaacaccgc tttcgccagc ctgtcgccga tctccttctg gacgaggcgg cgcaacggcc
     3361 gagccccgta tgccgggtcg tagccggtga tggcgagcca ctcgcgggcc gcttcggtga
     3421 cctccagggt gatccgccgg tcgtgcagcc gggaggcgag ctcgcggacc tgcagctcga
     3481 cgatgtggcc cagctcagtg gacgtaagcg ggtcgaagat gacgatctcg tcgaggcggt
     3541 tgaggaactc gggcttgaag ctcgagcgca ccaggcccat gaccgcctcg cgcttgaccg
     3601 catcgtccat cgtcgggtcg acgaggaact ggctgcccag gttgctggtc atgacgagga
     3661 tgacgttgcg gaagtccacc gtccggcctt ggccgtccgt cagccggcc
//
LOCUS       DASYFY010000324         2315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_970041, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000324 DASYFY010000000
VERSION     DASYFY010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_970041"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..660
                     /locus_tag="VGN19_06565"
     CDS             202..660
                     /locus_tag="VGN19_06565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195583.1"
                     /translation="MVRDVGGNVLPDGSTLKPGQQLNVEGDGYAPVSTVDAVIASTPT
                     TVAAAQVDASGHVSLVAVLPTNLPAGTHTLTVSGAGSSAVFRFTVAATTGGTSDPATS
                     TAGNAGSGTALPFTGTNATALSLTGFGLVGAGACALAAARRFNRRPSRRH"
     gene            981..1781
                     /locus_tag="VGN19_06570"
     CDS             981..1781
                     /locus_tag="VGN19_06570"
                     /inference="COORDINATES: protein motif:HMM:NF016119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sortase"
                     /protein_id="HEV7195584.1"
                     /translation="MALSFVAEVTFLGTLTHNRDQITSLDALRADLANATAPVGPLDE
                     HGQELEAARPVAILEIPALGIREVVGEGTSAAVTMSGPGHRRDSVLPGQVGVSVLFGR
                     SSAFGAPFQNIASLRPGTPIVAETGQGRSEFRVTAVRRAGDPLPQPLPAGASRLLLIT
                     ADGGWFQPTGVVMVDATAVTKSFDTGPQLRSSQLEPSERLMAGDTSNTNLFPLVLWCQ
                     LLLALSVALVWSALRWGRWQTWLVGVPAVLAVGLCVVDHLCQTLPNLL"
     gene            1805..>2315
                     /locus_tag="VGN19_06575"
     CDS             1805..>2315
                     /locus_tag="VGN19_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005054393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195585.1"
                     /translation="MSVIDDTALLPPASTTPAGPSPAARRLASLEADDITAWFGDHKV
                     LQRVSLHMPAGEVTALIGPSGCGKSTFLRILNRMHELVPGASLAGEVRLDGHDVYSPE
                     RRLTWARREIGMVFQKPNPFPAMSIYDNVLAGLTLTGTKADRSAKDDLVEESLIRAGL
                     WKEVFDRLRQ"
BASE COUNT          347 a          861 c          728 g          379 t
ORIGIN      
        1 acggcgccgc ctagcaccac gaccaccacg acggcgccgc ctagcaccac gaccaccacg
       61 acggcgccgc ctagcaccac gaccaccacg acggcgccgc ctggcaccac gacgacaacg
      121 gctccgcctt cgtcaaccac cacgtcgccg tctagcacga cgacagccac cagcagcgcg
      181 ccgaactcgt ccgcttcgct cgtggtccgc gacgtcggtg gcaacgtcct cccggacggt
      241 tcgacgctca agcccggaca gcagctcaac gtcgagggcg acgggtatgc ccccgtcagc
      301 accgtcgatg ccgtgattgc cagcaccccg acgaccgtgg cggcggctca ggtcgacgcc
      361 tccggtcacg tcagcctcgt tgcggttctg cccaccaacc tgccggccgg aacgcacacg
      421 ctcacggtga gtggagcggg atcgtctgca gtgttcaggt tcaccgtggc ggcgaccacc
      481 ggtggcacct ctgatccggc cacttccacg gctggcaacg cagggtcggg caccgccctg
      541 ccgttcactg gaacgaacgc tactgctttg tcgctgaccg gattcggcct cgttggcgcg
      601 ggcgcctgtg cgcttgcggc ggctcgccga ttcaaccgtc ggccgtcgcg ccggcactga
      661 tcccctggct ggctggcggc cctcgcaggt cgccagccag ccgccgctct cgatgaagga
      721 cccgcgtggc aacccccgtc atgactgaac ccagggtggc acccgagacc agcactgcga
      781 cgccgtctgc tgcacccagc cgatggcagc gagtggtctc ccgacgccca cggccgggcc
      841 gcagccctgg actgacgcga ctcactcgat cttggcggtt tccggttgcg ttgcggcacc
      901 ggcattcctc ggcgaggccg tcgcactcga cgccggcatc ggtactgtat ctctccaccg
      961 ccctgtgtgt ggtggcggcg ttggcgctca gctttgtcgc tgaggtgact tttctcggca
     1021 cgttgacgca caaccgggat cagatcacca gcctggacgc gctgcgcgca gacctcgcca
     1081 acgcgaccgc cccggtcggt cccctcgacg aacatgggca ggagctggag gccgcaaggc
     1141 cggtggcgat cctcgagatc cccgcactcg gcatacgaga ggttgtgggg gagggcacct
     1201 ccgccgcggt cacgatgtcc ggcccggggc accgtcgtga cagtgtgctg cccggtcagg
     1261 tgggggtgag cgttctcttc gggcggtcat ccgcgttcgg tgcgcccttc cagaacatcg
     1321 cctctctgcg ccccgggacc ccgatcgtcg cggagaccgg gcagggcagg tcggagttca
     1381 gggtgacggc tgtgcgccgg gcgggcgacc cgttacccca gccgcttcca gcaggtgcga
     1441 gccgactgct gctgatcacg gccgacggag ggtggttcca gccgaccggc gtcgtcatgg
     1501 ttgacgccac cgcagtcacc aagtctttcg acaccgggcc ccagctgcgc tcgtcgcagc
     1561 tggaaccttc agaacgcctc atggctggcg acaccagcaa caccaacctc tttcctttgg
     1621 tgctgtggtg ccagcttctg ctcgcactct cggttgcgct cgtgtggtcg gccctgcgtt
     1681 ggggacgttg gcagacctgg ctcgtcggag tacctgccgt tcttgccgtc ggcttgtgcg
     1741 tcgtcgacca cctctgccag acgctcccca acctcctatg accaccctcg ccaaaggatc
     1801 atccatgtcc gtcatcgacg acaccgctct cctgccgccc gcgtcgacca ccccggctgg
     1861 tccgtcgcct gccgcgcgcc gcctggccag cctcgaggcc gacgacatca ccgcatggtt
     1921 cggcgaccac aaggtgctgc aacgggtctc actgcacatg cctgccgggg aggtgaccgc
     1981 actgatcgga ccctcgggct gcggcaagtc caccttcctg cggatcctca accgcatgca
     2041 cgagctcgtc ccgggcgcct ccctcgcagg tgaggtgcgg ctcgacggcc acgacgtgta
     2101 ctcgcccgag cggcgcctca cctgggcgcg tcgcgagatc gggatggtct tccagaagcc
     2161 caacccgttc ccggccatga gcatctacga caacgtcctg gccggcttga ccctcaccgg
     2221 gacaaaggcc gaccgttcgg ccaaggacga cctcgttgag gagagcctga tccgggcggg
     2281 cctctggaag gaggtcttcg accgcctgcg acagc
//
LOCUS       DASYFY010000325         1670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_602398, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000325 DASYFY010000000
VERSION     DASYFY010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602398"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1035)
                     /gene="gmd"
                     /locus_tag="VGN19_06580"
     CDS             complement(64..1035)
                     /gene="gmd"
                     /locus_tag="VGN19_06580"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011776704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008446 - GDP-mannose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEV7195586.1"
                     /translation="MAKRALITGVTGQDGSYLAELLLSEGYTVIGMVRRSSTLNFERI
                     AHIQDRLELVAGDLLDEVSLINVLRDHRPTEVYNLAAQSFVQTSFSQPVLTGETTALG
                     VTRMLDAIRLVDPEIRFYQASSSEMFGKVHEVPQRESTPFHPRSPYGVAKVYGHWITV
                     NYRESYGLHASSGILYNHESPRRGLEFVTRKVTHGVARIAHKLDDKLALGNLDAQRDW
                     GYAADYVRAMWLMLQQDAPDDYVVSTGETHEVRELCRLAFEAAGLDWEQHVVIDEKFL
                     RPAEVDLLVGDPTKAHTVLGWQPEVDFPGLVTMMVEADMDLVRKSLR"
     gene            1095..>1670
                     /locus_tag="VGN19_06585"
     CDS             1095..>1670
                     /locus_tag="VGN19_06585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195587.1"
                     /translation="MPTACMVSFRLGGGDGVAIEAAKWAAALVQLGWDVRTVAGSGTV
                     DTILPGLAIDAPVPPARAEVERAVAGADLVIVENLCSLPLNPRAADVVASVCAGRPAL
                     LHHHDLPWQRPHLAHQPPPPDDPAWAHVTINELSRGELAAHGITATTVYNAFDPDPVP
                     GDRDGARDALGVRAGTLLLLQPTRALPRKNIA"
BASE COUNT          250 a          574 c          591 g          255 t
ORIGIN      
        1 cggatcagcc gagatcgcag cgggcaagaa gggtgcgaag agcgcggtgg cccccgatcc
       61 gttctacctg aggctcttgc ggaccaggtc catgtcggcc tcgaccatca tggtcaccag
      121 accggggaag tcgacctcag gttgccaacc gagcacggtg tgcgccttgg tcggatcccc
      181 caccaggaga tcgacctcgg cgggacggag gaacttctcg tcgatcacga cgtgctgctc
      241 ccagtcgagg ccggcagcct cgaaggccag acggcacagc tcgcgcactt catgggtctc
      301 cccggtcgag accacgtagt cgtcgggtgc gtcctgctgg agcatcagcc acatggcccg
      361 gacgtagtcg gcggcgtagc cccagtcccg ctgggcatcg aggttgccga gggccagctt
      421 gtcgtcgagc ttgtgcgcga tgcgggccac gccgtgggtg accttgcgcg tgacgaactc
      481 gaggccgcgg cgcggggact cgtggttgta caggattccc gaggacgcgt gcagcccgta
      541 gctctcgcga taattgacgg tgatccagtg cccgtagacc ttggccaccc cgtacgggct
      601 cctcgggtgg aacggggtgg actcgcgttg cggcacctcg tggaccttgc cgaacatctc
      661 cgaggagctg gcctggtaga agcggatctc gggatcgacc agtcggatgg cgtcgagcat
      721 gcgcgtgacg ccgagggctg tcgtctcccc ggtgaggacc ggctggctga agctcgtctg
      781 gacgaaggac tgggcggcca ggttgtagac ctcggtgggc cggtggtcgc gcagcacgtt
      841 gatcagcgac acctcgtcga ggaggtcgcc cgcgaccagc tcgagccggt cctggatgtg
      901 ggcgatgcgc tcgaagttca gcgtgctcga gcgccgcacc atcccgatga ccgtgtagcc
      961 ctccgagagc aggagttccg ccaggtagga cccgtcctgc ccggtgacgc ccgtgatgag
     1021 tgcccgcttc gccatcgggg cgaaacgcta gccgaccgac gtgcgggccc cacccgcgcg
     1081 cctacagtgc cgtcgtgccg acggcatgca tggtctcgtt ccgcctgggc gggggcgacg
     1141 gggtcgccat cgaggccgcc aagtgggccg ctgcgctggt ccagctcgga tgggacgtcc
     1201 gcactgtggc gggctcggga acggtcgaca cgatcctgcc cggattggcc atcgacgcgc
     1261 ccgtgccccc cgcacgggcc gaggtggagc gcgcggtggc cggcgccgat ctcgtgatcg
     1321 tcgagaacct ctgctcgctg cccctcaacc cgcgggcagc ggacgtcgtg gcgtcggtgt
     1381 gcgcggggcg tcccgcgctg ctgcaccatc acgatctccc gtggcagcgg ccgcaccttg
     1441 cccaccagcc gccgccgccc gacgacccgg cttgggcgca cgtgacgatc aacgagctga
     1501 gccgtgggga gctggcggcc cacgggatca cagcgacgac cgtctacaac gcgttcgacc
     1561 ccgaccccgt gcccggggac cgggacggcg cgcgcgacgc cctcggcgta cgagccggga
     1621 cactgctgct gctccaaccc acgcgggcgc tcccccgcaa gaacatcgcc
//
LOCUS       DASYFY010000326         2299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_970099, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000326 DASYFY010000000
VERSION     DASYFY010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_970099"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VGN19_06590"
     CDS             <1..466
                     /locus_tag="VGN19_06590"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195588.1"
                     /translation="IAVGPAWPVQFWAPHPVEVTGDKDRLRQVVDNLLANVRAHTPEG
                     TTTTVRVDQVGDQAEIEVRDTGPGMRGDEANRIFERFYRADPARSRMRGGSGLGLSIV
                     AAIVEAHGGTVTASSAPGQGMTVTVRIPNSADETGSDAVPAGADRLPAQPTA"
     gene            542..1747
                     /locus_tag="VGN19_06595"
     CDS             542..1747
                     /locus_tag="VGN19_06595"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
                     /protein_id="HEV7195589.1"
                     /translation="MTALASHEADVDPRRLPMDVEIVVPVYNEAPQLAARITALRSFL
                     DESFPFRALVTIVDNASTDDTMQVARTLAESVPGIAVMHLDRKGRGYALRSAWSTSSA
                     PVVAYMDVDLSTSLPGLLPLVAPLLSGHRDVAIGSRLAPGAHVVRGPKRELISRAYNL
                     LLKVTLRGHFSDAQCGFKALRRDAAQQLLPLVEDDEWFFDTELLVTAERLGLRIGEVP
                     VDWVDDPDSRVNIVSTALDDLRGVRRLLFRRPKGFRRAGSNEVAADQLLRFAGVGVIS
                     TLGYLFLFVAWRPMLGALGANAVAMAIATLFNTAVHRELSHGRDGLVRRGRMILVVLA
                     LYAISLALTTGALLIAGLGWPGALVPELIAITVANALAAIFRFSVLRAWVFRPGSMTN
                     PVPTLEVSR"
     gene            1744..>2299
                     /locus_tag="VGN19_06600"
     CDS             1744..>2299
                     /locus_tag="VGN19_06600"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018774271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEV7195590.1"
                     /translation="MTDLRPAPDAPIAVLDPPAPPATTAADDRPGVSGGAAWPPGPRP
                     NRVVRFFRGKESDPVWVRPALLTLLAATAVLYLWGLGASGWGNTFYAAAVQAGTKSWK
                     AFFFGSSDSSNFITVDKPPAFLWPMEISARIFGLNSWSVLVPQALEGVATVGLVYLSV
                     RRWFSAQAALLGGAVVALTPVAAMM"
BASE COUNT          309 a          834 c          766 g          390 t
ORIGIN      
        1 gatcgccgtg gggcccgcct ggcccgtgca gttctgggct ccacatccgg tggaggtgac
       61 cggcgacaag gaccgcctcc gccaggtcgt tgacaacctg ctggcgaacg tgcgcgccca
      121 cacgcccgag ggcacgacca cgaccgtccg ggtcgaccag gtcggtgacc aggccgagat
      181 cgaggtccgc gacaccggcc ccgggatgcg gggcgacgag gccaaccgga tcttcgagcg
      241 gttctaccgg gcggacccgg cgcgctcgag gatgcggggt gggagcggtc tcgggctctc
      301 gatcgtcgcc gccatcgtcg aggcccacgg cgggacggtc acggccagct ccgcgccggg
      361 gcagggcatg acggtgaccg tgcgcatccc gaacagcgcg gacgagaccg gttcggatgc
      421 ggtcccagcc ggggccgacc gcttgccggc gcagcccacc gcatagccgg cgccaggatt
      481 cacacccggt ccacagcggg gcttcatgga ggttggaggc ccggtcggca ccatgcgggg
      541 catgacagcc ctggccagcc acgaggccga cgtggacccc cgccgcctcc ccatggacgt
      601 cgagatcgtg gtgcccgtct acaacgaggc gccccagctg gcggcccgta tcaccgcgct
      661 gcgctcgttc ctcgacgagt cgttcccctt ccgggcgctg gtcaccatcg tggacaacgc
      721 gagcacggac gacacgatgc aggtggcccg cacgctggcc gagtccgttc ccgggatcgc
      781 cgtcatgcac cttgaccgca aagggcgcgg ctacgcgctc cgctcggcat ggtcgacgag
      841 cagcgccccc gtcgtggcgt acatggacgt ggacctgtcg acctcgctgc cgggcctgct
      901 gcctctggtg gcgcccctcc tctccggcca tcgcgacgtc gccatcggct cacgcctggc
      961 accgggcgca cacgtggtgc gcggcccgaa gcgcgaactg atctcccgcg cctacaacct
     1021 gttgctcaag gtcacgttgc gcgggcactt cagcgacgcg cagtgcggct tcaaggcgct
     1081 ccgacgcgac gcggcccagc aactgctgcc actcgtcgag gacgacgagt ggttcttcga
     1141 caccgagctg ctggtcacag cggagcgcct cggccttcgc atcggagaag tccccgttga
     1201 ctgggtcgat gaccccgact cgcgggtcaa catcgtgtcg acagcgctcg acgacctgcg
     1261 gggcgtccgg cggctgctct tccgccgacc caagggattc cgtcgggccg gctcgaacga
     1321 ggtcgcggcg gaccaactgc tgcgcttcgc gggcgtcggc gtgatctcta cgctcgggta
     1381 cctcttcctc ttcgtcgcct ggcgtcccat gttgggcgcc ctcggcgcca atgccgttgc
     1441 catggcgatc gccacgttgt tcaacaccgc agtccaccgt gagctctcgc acggcagaga
     1501 cgggctcgtg cggcgcggcc gcatgatcct tgtcgtcctc gcgctgtacg cgatcagcct
     1561 ggcgctgacg accggtgcac tcctgattgc gggactggga tggccaggtg cgttggtgcc
     1621 cgagctcatc gccatcaccg tggcaaacgc gctcgccgcg atctttcgat tcagcgttct
     1681 gcgcgcctgg gtctttcgcc cgggttctat gaccaaccct gtgcccactt tggaggtgtc
     1741 tcgatgacgg acctgcgacc cgcccccgac gctccgatcg ctgtgctcga cccgcccgca
     1801 ccgccggcga cgactgccgc cgacgatcgg ccgggagtgt ccggtggcgc tgcctggcct
     1861 ccgggacctc gtccgaaccg ggtggttcgc ttcttccgtg gcaaggagag cgaccccgtc
     1921 tgggtgcgac ccgcccttct cacattgctg gctgccacgg cggtcctcta cctctggggc
     1981 ctcggcgcca gtggttgggg caacaccttc tatgcagccg ccgtgcaggc cggcaccaag
     2041 agctggaagg ccttcttctt cggctcgtcg gactcctcga acttcatcac cgtcgacaag
     2101 cctcccgcct tcctgtggcc catggagatc tcagcgcgga tcttcgggtt gaactcctgg
     2161 agcgttctgg ttccccaggc cctcgagggt gtggccaccg tggggctcgt ctatctctcg
     2221 gtccgacgct ggttcagcgc gcaggcggcc ctcctcggcg gtgcggtcgt ggcgctcacc
     2281 ccggtggccg ccatgatgt
//
LOCUS       DASYFY010000327         4635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_707051, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000327 DASYFY010000000
VERSION     DASYFY010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4635
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707051"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..2198)
                     /gene="uvrB"
                     /locus_tag="VGN19_06605"
     CDS             complement(90..2198)
                     /gene="uvrB"
                     /locus_tag="VGN19_06605"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEV7195591.1"
                     /translation="MRPTTDLQRTVAPFEVVSEFKPAGDQPAAIADLTRRVKAGERNT
                     VLLGATGTGKSATTAWLIEQVQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYY
                     DYYQPEAYIPQTDTYIEKDSSINDEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
                     QEYVDRMARLRVGMQFDRDDLLRRFVQMQYTRNDLAFTRGTFRVRGDTVEIIPVYEEL
                     AVRIEFFGDEIERIYTLHPLSGEIMREEEEMYVFPATHYVAGPERMERAIRGIELELA
                     DQLASFEKQGKLLEAQRLRMRTTYDVEMMRQVGSCSGIENYSMHIDGRPRGSAPNTLL
                     DYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRQLVDHGFRLPSAMDNRPLRWEEFLD
                     RIDQTIYLSATPGPYELAQASGVVEQIIRPTGLIDPEVILKPTKGQIDDLLHEIGERT
                     AKNERILVTTLTKKMAEDLTDYLLDKGVRVRYLHSEVDTLRRVELLRELRMGEYDVLV
                     GINLLREGLDLPEVSLVSILDADKEGFLRSARSLIQTIGRAARNVSGQVHMYADRITP
                     SMEAAIEETSRRREKQIAYNLEAGVDPQPLRKKIADITDLLQREDADTEALMGSGRSQ
                     SRGKGGGRGGRGSAQADAGVAMDRLRNLPANDLANLIQELSAQMHQAATDLHFELAAR
                     LRDEIGDLKKELRQMSEATK"
     gene            complement(2293..2616)
                     /locus_tag="VGN19_06610"
     CDS             complement(2293..2616)
                     /locus_tag="VGN19_06610"
                     /inference="COORDINATES: protein motif:HMM:NF014687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HEV7195592.1"
                     /translation="MTEFPDRLGLQPERTALAWQRTAITSLAILLPMVVVSLKVGQPV
                     LAGLGALAALGCTPMVVSVRRRLGQLSDDERGYSPYPPMLRVAVVTVLGSLGGLSVGV
                     AVFVH"
     gene            complement(2613..2990)
                     /locus_tag="VGN19_06615"
     CDS             complement(2613..2990)
                     /locus_tag="VGN19_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017828398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HEV7195593.1"
                     /translation="MADDRTPRSVYGLGEEPDPRFSLANERTALAWMRTALALVGGGV
                     AIVSLSGVATLPHWTALVGAGACVGGGALAVRAVVAWANVERALRLRRPLPAPRALVG
                     LAGGVVVLAGLTLVLASVEVARR"
     gene            complement(2983..4176)
                     /gene="coaE"
                     /locus_tag="VGN19_06620"
     CDS             complement(2983..4176)
                     /gene="coaE"
                     /locus_tag="VGN19_06620"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009079736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEV7195594.1"
                     /translation="MLRVGLSGGIGSGTSTVAQRLSQHGAQVIDADQLAREVVARGSV
                     GLAAITERFGDGILDAEGELNRAALGALVFADPGARRDLEGITHPLIASRTRELVDVA
                     APDAVVVHDVPLLVEKHLGPAYHLVVIVGAPEDTRVKRLMHTRGMTEVDARSRIAAQA
                     TDDQRRAAADVWLDNDGSPDGLLSAVDELWDERIVPFERNVRHHRRSLRPEVLSLVPT
                     DPTWAAQADRLLARLRLAFGDALASADHVGSTAVSGLLAKDVIDLQIGVWSLDDADEE
                     ALRARLDAAGFPRADGVFGDFDRGSEGMWPKRLHASADPARVAHIHIREASSPGWRWA
                     LMFRDWLRADAQARADYEAEKRRIAATGATVSEYVEAKEPWFDSIHDRAEAWAQETGW
                     EPAGG"
     gene            complement(4216..>4635)
                     /locus_tag="VGN19_06625"
     CDS             complement(4216..>4635)
                     /locus_tag="VGN19_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEV7195595.1"
                     /translation="LLDFVRPRHQLILITTRADGRPQASPVTGGVDDAGRLVISSYRE
                     RAKTTNARRRSQVSVVVLSDEFGGAWVQVDGDCEVLDAPESVEPLVEYFRNIAGEHPD
                     WTEYRQAMVDQDKSLLRVTPTRWGPVATGGFPARLAD"
BASE COUNT          719 a         1628 c         1555 g          733 t
ORIGIN      
        1 agtcgccttc ccacggctgg tcggcccacg ctccgggttt cgcgaggcag tgctcgcgca
       61 gctggtccgg cgtcatcgtc cagctcggct cacttggtcg cctccgacat ctggcgcagc
      121 tccttcttca ggtcgccgat ctcatcacgc agccgggcgg ccagctcgaa atgcaggtcg
      181 gtcgccgcct ggtgcatctg cgccgacagc tcctggatga ggttcgccag atcgttggcc
      241 ggcaggttgc gaagccgatc catcgccact ccggcgtcgg cctgtgcgct gcctcggccc
      301 ccgcggccac cacccttgcc gcgcgactgg ctacggcccg agcccatcag ggcctcggtg
      361 tctgcgtcct cgcgctgcag caggtccgtg atgtcggcga tcttcttgcg cagcggttga
      421 gggtcgactc ccgcctcgag gttgtaggcg atctgcttct cacgtcggcg agaggtctcc
      481 tcgatggcgg cctccatcga gggagtgatc ctgtcggcgt acatgtgcac ctgcccggag
      541 acgttccgtg cggcgcgccc gatggtctgg atcagcgacc gggccgagcg aaggaagccc
      601 tccttgtccg cgtcgaggat gctgaccaac gagacctcgg gcaggtccag accctcgcga
      661 agcaggttga tgccgacgag cacgtcgtac tcgcccatgc gcagctcgcg cagcagctcc
      721 acccggcgga gcgtgtccac ctcgctgtgg agatagcgga ctctcacgcc tttgtcgagc
      781 agatagtcgg tgaggtcctc cgccatcttc ttggtcaggg tggtgacgag gatccgctcg
      841 ttcttggctg tccgctcccc gatctcgtgg agcaggtcgt cgatctggcc cttggtcggt
      901 ttgaggatga cctcgggatc gatgaggccg gtcggccgga tgatctgctc gaccacccca
      961 ctggcctggg cgagctcgta gggaccgggc gtggcagaga ggtagatcgt ctggtcgatc
     1021 cggtcgagaa actcctccca ccgcaggggc cggttgtcca tcgccgaagg caggcgaaag
     1081 ccgtggtcga ccagctgtcg cttgcgagac atgtcgccct cgtacatggc gccgatctgc
     1141 ggcacggtca catgggactc gtcgatgacg agcaggaagt cctcggggaa gtagtcgagc
     1201 aacgtgttcg gcgccgaccc acgaggacgc ccgtcgatat gcatcgagta gttctcgatg
     1261 cccgaacagg accccacctg acgcatcatc tcgacgtcat aggtggtgcg catccgcaga
     1321 cgctgagcct cgagcagctt gccctgcttc tcgaaggacg ccagctggtc cgcgagctcc
     1381 agctcgatcc cgcgaatggc tcgctccatc cgctcaggac ccgccacgta gtgggtggcg
     1441 gggaagacgt acatctcctc ctcctcgcgc atgatctcgc cgctgagtgg atgcagggtg
     1501 tagatgcgct cgatctcgtc accgaagaac tcgatccgga ccgcgagctc ctcgtagacc
     1561 gggatgatct cgaccgtgtc gcctcgaacc cggaacgtgc cgcgggtgaa ggccaggtcg
     1621 ttccgggtgt actgcatctg gacgaaccgg cgcagcaggt cgtcgcggtc gaactgcatg
     1681 ccgactcgca gccgcgccat ccggtcgacg tactcctggg gggtgcccag cccgtagatg
     1741 caggacaccg aggccaccac gatcacatca cgccgggtca gcagcgagtt ggtggcgctg
     1801 tgacgcaacc gctccacctc gtcgttgatc gaggagtcct tctcgatgta cgtgtccgtc
     1861 tgagggatgt aggcctcggg ttggtagtag tcgtagtacg agacgaagta ctcgactgca
     1921 ttgttgggca gcagctcgcg gaactcgttg gcgagctgcg cagcgagcgt cttgtttggt
     1981 gccatcacca gggtcggccg ttgcacctgc tcgatcagcc atgcagtcgt ggccgacttc
     2041 cccgtgccgg tcgcgcccag caggacggtg tttcgctcgc cggccttgac ccggcgcgtt
     2101 aggtcggcga tcgccgccgg ctggtcaccg gcgggcttga actccgagac gacctcgaag
     2161 ggagccaccg tgcgctgcag atcggtcgtg ggacgcatgg gtccaccgta aggctcgcca
     2221 ccgacagcac caccacgcgg catacctcgg cgcaggaacc ctcagggcag gaagccccac
     2281 cgcaagaaac gctcagtgca cgaacaccgc cacgccgacg ctcagtcccc ccaatgagcc
     2341 cagcaccgtc acgacggcca cgcgcagcat cggcggatag ggcgagtaac cccgctcgtc
     2401 gtcggacagc tgaccgaggc gccgccggac tgacaccacc atgggcgtgc agccgagggc
     2461 cgccagggcg cccagaccag ccaggaccgg ctggcccacc ttcaggctca ccacgaccat
     2521 cggcagcagg atggccaggg aggtgatggc ggtccgttgc cacgccaggg cggtgcgttc
     2581 cggttggagc ccgagccggt cggggaactc cgtcaccggc gggcaacctc gaccgacgcc
     2641 agaacgaggg tgaggcccgc gaggacgacc actccgcccg ccagtccgac tagcgctcgc
     2701 ggcgccggca ggggacgtcg cagccggagg gcgcgctcca cgttcgccca ggccacgacg
     2761 gcccgcacgg ccagcgcgcc gcctcccaca cacgctccgg cacccaccag cgcggtccaa
     2821 tgcggcaacg tcgccactcc ggacaaggac acgatcgcga caccaccgcc gacgagtgcc
     2881 agggccgtgc gcatccacgc gagggccgtc cgttcgttcg cgagcgagaa ccgggggtca
     2941 ggctcctccc ctaggccgta gacgctgcgc ggggtgcggt cgtcagccac cggcaggctc
     3001 ccagccggtc tcctgagccc aggcttcggc acggtcgtgg atggagtcga accatggctc
     3061 cttggcctcg acgtactcgc tgacggttgc tcccgtcgcg gcgatacgcc gcttctccgc
     3121 ctcgtagtcc gctcgagcct gcgcatctgc gcggagccag tcgcggaaca tcagcgccca
     3181 gcgccagccg gggctgctgg cctcgcggat atggatgtgg gcgaccctgg ccgggtcggc
     3241 gctcgcgtgc aggcgtttcg gccacattcc ctctgaccca cggtcgaagt cgccgaagac
     3301 cccgtcggcg cgcgggaagc ccgccgcgtc caggcgggcc cgcaacgcct cctcgtcggc
     3361 gtcgtcgagg ctccagaccc cgatctgaag gtcgatgacg tccttggcca gcaggcccga
     3421 gacggcggtg ctgcccacgt ggtcagcact ggccagagcg tcgccgaacg cgagccgcag
     3481 ccgggccagc agccgatcgg cctgagcggc ccaggtcggg tcggtcggaa ccaacgagag
     3541 cacctcgggt cgaagcgacc gtctgtggtg acgcacgttg cgctcgaacg gcacgatccg
     3601 ctcgtcccag agctcgtcga ccgccgacag cagcccgtcc gggctcccgt cgttgtccag
     3661 ccacacgtcc gccgccgccc ggcgctgatc gtcggtggcc tgagcggcga tcctgctgcg
     3721 cgcgtcgacc tcggtcatgc cccgggtgtg catcagccgt ttgacgcggg tgtcctcggg
     3781 cgcgcccacg atgaccacca ggtggtacgc gggacccagg tgcttctcca cgagcagcgg
     3841 gacgtcatgg acgacgacgg cgtccggtgc cgcgacgtcg accagctcgc gggtacggct
     3901 cgcgatgagg gggtgggtga ttccctcgag atccctcctg gcccccgggt cggcgaagac
     3961 cagcgctccg agtgcggccc ggttcagctc accctcggcg tcgaggatgc cgtccccgaa
     4021 ccgctcggtg atggccgcca gcccgacgct cccccgcgcg accacctccc gggcgagctg
     4081 gtcggcgtcg atgacctgcg caccatgctg cgaaaggcgt tgcgcgacag tggatgtgcc
     4141 cgaaccgatg cccccggaga ggccaacgcg caacatgcga ctcaccctac cggcggccgg
     4201 ggcctggtgg gcggatcagt ccgcgagccg cgcagggaaa ccgcccgtgg ccaccggccc
     4261 ccaccgcgtc ggggtcaccc gtagcagcga cttgtcctgg tcgaccatgg cctgccggta
     4321 ctcggtccag tccgggtgct caccggcgat gttccggaag tactcgacga ggggttccac
     4381 ggactccgga gcgtcgagca cctcgcagtc accatcgacc tggacccagg cgccaccgaa
     4441 ctcgtcggag agcaccacga cgctgacctg gctgcgtcga cgcgcgttcg tggtcttggc
     4501 gcgttcgcga tagctggaga tgaccagccg gccagcgtcg tcgacgccgc cggtcacggg
     4561 cgacgcctga gggcgaccgt ccgctcgggt ggtgatgagg atcagctggt gccgcggccg
     4621 gacgaagtcc agcag
//
LOCUS       DASYFY010000328        11233 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1127201, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000328 DASYFY010000000
VERSION     DASYFY010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 11233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11233
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1127201"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VGN19_06630"
     CDS             <1..375
                     /locus_tag="VGN19_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020076685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7195596.1"
                     /translation="QGGGGVVVNISSVHEDWPMPGNAPYCVSKGGMRMLTRTAGVELG
                     THGIRVVGVGPGAVDTPINQSTSSDPAKVAALDAAIPLGRMANPTEIAETVVFLASDR
                     GGYATATTVFVDGGIMQGSVGL"
     gene            complement(410..2062)
                     /locus_tag="VGN19_06635"
     CDS             complement(410..2062)
                     /locus_tag="VGN19_06635"
                     /inference="COORDINATES: protein motif:HMM:NF042648.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HEV7195597.1"
                     /translation="MRRWRAAAAVVVVVVGGFAVAGCSVVSTGTSGASAGSALPVAPS
                     NTAPSVATSGPVEVVASSCAVPTELRLDSDWQIRNPGARHALEGWADRTSVLPGERVS
                     LHVSSAVGTFTATAYRMGWYGGVGAARVWRSAATAAQLQPVPAPTAQYLTTRTIATTW
                     PASLALPTQDWPPGAYLIRLDSSAGQRFVPLTVRSRQTAGRLVMVNDVTTWQAYNAWG
                     GYSLYHGAVDDADFAGRSRAVSFDRPYDGDGSGGFVQQDLPAIAHAERLGLCLAYATD
                     VDLHAVPDLLTGAAGVITLSHDEYWSSAMRAAVTKARDAGVNVAFLGANAVFRHMRFA
                     DTPFGPNRLEIDYKRLSDPLYRIDNSEVTTDWREPPVPRPESTLTGVYYECNPVDADL
                     VITDPSNWLFANTPARYGLHLPHVVGPEYDRVNPGVPTPATIEVLTHSPVRCRGVATF
                     SDSAYYTVESGAGVFASGSNWFTRALPEAGSGGVTAAVVGGELTNLLTAFAAGPAGRN
                     HPSHPNLAALNEYRGDPVAAAQNSPSGAFRRVVPNPSASRPD"
     gene            2127..3689
                     /gene="mptB"
                     /locus_tag="VGN19_06640"
     CDS             2127..3689
                     /gene="mptB"
                     /locus_tag="VGN19_06640"
                     /inference="COORDINATES: protein motif:HMM:NF038066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol phosphomannose-dependent alpha 1,6
                     mannosyltransferase MptB"
                     /protein_id="HEV7195598.1"
                     /translation="MARWTSPLPHRVLPFLERWQPARQDVTPTQWRWIGCGAGIVLAG
                     SSWLCGATPKELPSVWPGVIAWRPRVGGSPLAATALFLAMAAMLYAWWALRDADLSVG
                     WVQRTATAWFAPLLASAPLFSRDVYSYAVTGLQLLSGGDPYHQGVRHLVSPWVSSVSK
                     VWLDTPAPYGPAFMLLTRVTASAAQGHLLVAVALFRLTVVASVVVIAWAIPATARALG
                     TDPVKATWLTLLTPLVGAHLVAGIHNDGLMVAGMVASVALALRRRHVWACLVLALAIA
                     IKVPAVIAVPFVALIVADHRTESQGRTWWRLVRVAAVVGLGTVAAFVVLSLLSGLGFS
                     WIAALNTPGASIQWTSLPTALGMGVGAIGTVFGHNVEHGAVTVLRDLALVALAATLIV
                     LWLRAAREAHDSRAVVRYAGLAMLAVIVLSPAFHGWYLLWALPLLATTVDRRRWVTAL
                     ALVASLMCVFVLPGGYGLALVTTWVGVPLYFVATPVLVMRAVSWARSYAWGELFSLAG
                     AGTRTHQPSRSA"
     gene            complement(3724..5385)
                     /locus_tag="VGN19_06645"
     CDS             complement(3724..5385)
                     /locus_tag="VGN19_06645"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEV7195599.1"
                     /translation="MNSTKLGGALCATAVIAAVAAGASSANATTDSTTGRRQTPQHVL
                     LLSVDGMHQRDLTWYVRQHPHSALAALVHGGTSFTRAQTPVPSDSFPGMVGQVTGGNP
                     RTTGVYYDDTFNHALLPAGTTSCAGATPGAEVAYTEAADKDPQALDAGQGLSNLPDGI
                     LKMTGHPGSLLDRAQLPVDPKSCTPVYPHQYLHVNTVFEVAKRAGLHTAWSDKHPAYE
                     ILGGPSGSGLDDLFAPEINSKATGYPGGIDWTQDNAATQQYDGYKVKAVLNEIDGYDH
                     SRSTKAGVPGVFGMNFQSVSTAEKLPVSDGLKGGYLADGVTPGPLLAKALDFINASVG
                     SFEREIADRGLGKTTTVILSAKHAQSPTKPSALTRVPDGAIIDGLNAAWKATHPTAPA
                     LVAMSTNDDIMQLWLSNRAAEATTFAANYLKSHSAAGNDINGAPRTVAASGLATVYAG
                     KDAARFFGVAASDSRHPDVLGIVQHGVVYTGGKAKIAEHGGADPQDRDVPLVIAGPGS
                     HRGETVNAEVETTQIAPSILRLLGLDPRSLQAVRIEHTQVLPTVG"
     gene            complement(5527..6363)
                     /locus_tag="VGN19_06650"
     CDS             complement(5527..6363)
                     /locus_tag="VGN19_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195600.1"
                     /translation="MSTATATKATSRRGSRQTPKNVTQARVLLSEWTKLRSLRSTVFS
                     LLAAVVFIIGLAVLVPSVTVAHWPPRNPGEAALFDPTSRSLAGIFLAQLAIGVLGILL
                     ISGEYATGMIRATFAAVPTRLPVLWAKTVVFATTTLVVTVPAVLAAFLIGQSILKGKN
                     LQTSLGDAGVLRAVIGAALYLTVIGILGLGLGALLRNTAAAISTLFGILFVLPIIVRF
                     LPSSWSDPIDKYLPSTLGEGITHVHADPTLLSPWGGFALFCGYAAVVLAGAAVLLRRR
                     DA"
     gene            complement(6360..7325)
                     /locus_tag="VGN19_06655"
     CDS             complement(6360..7325)
                     /locus_tag="VGN19_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012299435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195601.1"
                     /translation="MIEARGLTKHYGHKVAVDDLTFTVRPGVVTGFLGPNGAGKSTTM
                     RMIIGLDAPNAGTVRVNGKAYRDHRAPLSEVGALLEARSVHTGRTAFNHLLALAQTAG
                     ISKRRVEEVVDLVGLGEVARKRAGGFSLGMGQRLGLASALLGDPQTLILDEPVNGLDP
                     DGIRWIRNLLKSLAAEGRTVFVSSHLMSEMAQTAEHLVVVGRGRLIADTSVADFIASS
                     SGNRVRVRTTDVPRLAEILSAPDVTVSVTGADSLEVEGVTTDQVGLAAGAAGVTLLEL
                     SAEQTSLEEAFMDLTKDSVEYHGSTTSTPASSTPAINLETSGVDR"
     gene            7514..8332
                     /locus_tag="VGN19_06660"
     CDS             7514..8332
                     /locus_tag="VGN19_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195602.1"
                     /translation="MPAAAPSPVRSDATSRSLLSKVPEVTAIFWVTKVLTTGMGETAS
                     DFLVRRINPFLAVALGFVAFAVALVLQLRARRYVPWIYWLAVSMVSVFGTMAADVVHI
                     GFGVPYVVSTVAFLLALAAVFAVWNATEHTLSIHSIYTRRRELFYWATVLTTFALGTA
                     AGDMTASTMHLGYFASGVLFAVVIAIPALAHWRLGLNAIVAFWLAYIVTRPLGASFAD
                     WLGVPASRRGLDLGTGPVTLTLAALIAVLVGYLTVTHADVPEQEREAALTSTGN"
     gene            complement(8362..8754)
                     /locus_tag="VGN19_06665"
     CDS             complement(8362..8754)
                     /locus_tag="VGN19_06665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195603.1"
                     /translation="MTNSLGSYVQEQMGLLGWSREALVERSGLDRYEAEAILDSPVLM
                     QWPEPEMMLSIARAFNVELRDVVLHSARACGLHVEVAPEHVESVSTIPNDELMREVRR
                     RLVLGAATGGYLANPSPCFGADSDAQFL"
     gene            complement(8889..10013)
                     /locus_tag="VGN19_06670"
     CDS             complement(8889..10013)
                     /locus_tag="VGN19_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009076597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEV7195604.1"
                     /translation="MTDAPQAGPLTGVSVVEVGGIGPGPFAGMLLADLGADVVRIDRP
                     GEDLWPTHQVLLRGRRSVVLDLKTELGRDAVLALAERSDVLLEGYRPGVAERLGFGPA
                     DALARNPRLVYGRMTGWGQDGPYAALAGHDLTYLAVSGALEAFAGADGRPVPPLNLLG
                     DFGGGGMLLALGVVSALLHSRATGVGQVVDAAIVDGVASMTAMHQAMLVSGMWSAPRG
                     QNLFDGGAPFYRCYRTRDDRWMAVGAIEPVFYERLLAGLGLAPDDLAADQLDETGWTR
                     VAGVFEDVFASRSRQEWVEVFAGLDACVAPVLSAAEAAADPHLVARGTYAVQPGPGTP
                     VQPGAAPRFSASPARTGTPAVRPGRHTEEVLRELGLTRGD"
     gene            complement(10141..10329)
                     /locus_tag="VGN19_06675"
     CDS             complement(10141..10329)
                     /locus_tag="VGN19_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003949541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BldC family transcriptional regulator"
                     /protein_id="HEV7195605.1"
                     /translation="MVVRTTEVEKLLTPAEVASLFRVDPKTVTRWAKAGKLNSIRTLG
                     GHRRYREAEVRALLADVI"
     gene            10532..>11233
                     /locus_tag="VGN19_06680"
     CDS             10532..>11233
                     /locus_tag="VGN19_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEV7195606.1"
                     /translation="MTAPSPIPPPAELHPIDASGHEQVVFCHDRTTGLRAIIGIYSTA
                     LGPALGGTRFYPYATEEAALGDVLRLSKGMAYKNAVAGLDLGGGKAVIIGDPATDKTP
                     ELLRAYGRFVESLGGRYVTACDVGTYVADMDIVSETTRFATGRSEANGGAGDSSVLTA
                     YGVFQGQRACAQHLWGEATLKGRTVGIAGVGKVGRILTGHLVEDGANVMVTDVNAEAL
                     AALKAQYPQIEVVADT"
BASE COUNT         1675 a         3915 c         3857 g         1786 t
ORIGIN      
        1 cagggtggcg gcggggtcgt cgtcaacatc tcgtcggtgc acgaggactg gcccatgccc
       61 ggcaatgcgc cgtactgcgt ctccaagggc ggcatgcgca tgctgacccg gacggccggg
      121 gtcgagctcg gcacccacgg catccgggtc gtcggtgtgg gcccgggggc cgtggacacg
      181 cccatcaacc agtccacgag ctcggacccc gcaaaggtgg cggccctcga tgcggccatc
      241 ccgctcgggc ggatggccaa cccgaccgag atcgccgaga ccgtcgtctt cctggcctcc
      301 gaccgaggcg ggtatgccac tgccacaaca gtgttcgtcg acgggggcat catgcagggc
      361 tcggtcggtc tctgaccctc gctctggccc ctctgcctgc gcgaccagtt cagtcggggc
      421 gcgacgcgga ggggttggga accactcgcc tgaacgctcc tgaaggactg ttctgcgctg
      481 ccgcaaccgg gtcgccgcga tactcgttca gcgctgccag gttcggatgc gagggatggt
      541 tccgccccgc cggaccggcc gcgaatgcgg tcaacaggtt ggtcagctca ccacccacga
      601 cggcagccgt gacgccgccc gagccagcct cgggtaacgc tcgggtgaac cagttgctgc
      661 ccgacgcgaa cacgccagcc ccgctctcga ccgtgtagta cgcactgtcc gagaaggtcg
      721 cgacgccccg gcagcggact ggagagtggg tgagcacctc gatcgttgcc ggagtgggga
      781 cacctgggtt gaccctgtcg tactcaggtc ccaccacgtg cggcaggtgt aggccatagc
      841 gcgcgggcgt gttcgcgaac agccagttcg acgggtcggt gatcaccagg tcggcgtcga
      901 ccgggttgca ctcgtagtac acgccagtga gggtgctctc cggtcgcggg accggcggct
      961 cccgccagtc ggtggtcacc tcgctgttgt cgatccggta cagcgggtcg gacaaccgct
     1021 tgtagtcgat ctcgagacgg ttcggaccga acggggtgtc cgcaaaccgc atgtgcctga
     1081 acacggcatt cgccccgagg aaggccacgt tgacccccgc gtcgcgggcc ttggtgaccg
     1141 cggcccgcat ggccgacgac cagtactcgt cgtggctcag ggtgatcacc cccgccgccc
     1201 ccgtgagcag gtcggggacc gcatggaggt cgacatcggt ggcatacgcc aggcacaacc
     1261 ccagccgttc ggcgtgggct atcgcgggga gatcctgctg gacgaagccc cccgaaccgt
     1321 caccgtcgta cggcctgtcg aacgagacgg ctcggctccg gccggcgaag tccgcgtcgt
     1381 cgactgcccc gtggtacagg ctgtagccgc cccacgcgtt gtacgcctgc caggtggtga
     1441 cgtcgttcac catgaccagg cggccggccg tctgccgcga acgcaccgtg aggggcacaa
     1501 accgttgtcc cgcactcgaa tcgagccgga tgagatacgc gcccggcggc cagtcctggg
     1561 tcgggagggc cagggacgcc ggccacgtcg tggcgatcgt ccgcgtggtc aggtattgcg
     1621 cggtgggcgc ggggacgggc tgcagctggg cagccgtggc ggcagagcgc cacacccgcg
     1681 cagcacccac cccgccatac caacccatcc ggtatgccgt ggccgtgaag gtgccgaccg
     1741 cgctcgagac gtgcaggctc acccgctctc ccggcaggac gctggtgcgg tctgcccaac
     1801 cctccagcgc gtgtcgtgcc cccggattgc ggatctgcca gtccgagtcg agcctgagct
     1861 cggtgggcac cgcgcaggac gacgccacca cctcgacagg tccggacgtc gcgacgctcg
     1921 gcgcggtgtt cgacggtgca accggtaggg cagacccggc gctggccccc gacgtccctg
     1981 tcgagacaac gctgcacccc gcaacggcga aacccccgac caccacaacg accaccgccg
     2041 cagcggcgcg ccatcgcctc atttccccag cgtaggcggc gcttcccccg cgagtggcgt
     2101 ggacacaccc tcgttactgt gacttcatgg cccgctggac ttcaccgttg ccccacaggg
     2161 ttctgccctt tctcgaacgg tggcaacccg cccgccagga cgtgacgccg actcagtggc
     2221 gatggatcgg ctgcggcgcc gggatcgttc tcgcggggtc gtcctggctg tgcggcgcga
     2281 cccccaagga gctgcccagc gtgtggcccg gggtcatcgc gtggcgaccg cgtgtcggtg
     2341 gatccccgct cgcagccacg gccctgttcc tcgcgatggc cgcgatgctc tatgcctggt
     2401 gggccttgcg tgacgccgat ctctcggtcg ggtgggtgca gcgcacagcc acggcgtggt
     2461 tcgccccttt gctcgccagc gcgccgctgt tcagccggga cgtctactcg tatgccgtca
     2521 ccggacttca gctgctgtcc ggcggggatc cctatcacca gggcgtccgt cacctggtct
     2581 cgccgtgggt gtcctcggtg tccaaggtct ggctcgacac cccagcgccc tacgggccgg
     2641 cgttcatgct gctgacccgg gtgacggcga gcgcggccca ggggcacctg ctggtggctg
     2701 tcgcactctt ccgtctgacc gtggtcgcct cggtcgtggt gatcgcctgg gccatccctg
     2761 ccactgcccg cgcgctcggc acggacccgg tcaaggcgac ctggctgacc ctgctcaccc
     2821 cgctcgtggg ggcacacctg gtcgccggaa tccacaacga cggcctcatg gttgccggca
     2881 tggtggcgag cgtcgccctg gcgttgcgcc gccggcacgt ctgggcctgt ctcgtgctgg
     2941 cactggccat cgccatcaag gtccctgcag tgatcgcggt ccccttcgtg gccctcatcg
     3001 tggccgatca ccgcaccgag tcgcagggac ggacctggtg gcgactggtg cgggtcgccg
     3061 cggtggtcgg cctgggcact gtcgcggcgt tcgtggtcct gagtctgctc agcggcttgg
     3121 gattctcctg gatcgccgcc ttgaacaccc ccggcgccag catccagtgg acctcactgc
     3181 cgacggctct ggggatggga gtgggcgcga tcggaacggt cttcggccac aacgtcgagc
     3241 acggcgcggt gacggtgctg cgcgacctcg ctctggtcgc gttggcggcc accctcatcg
     3301 tgctgtggtt gcgggccgcg agagaagctc acgactcccg cgccgtcgtc aggtatgccg
     3361 ggttggccat gctcgcggtc atcgtgctct cgccggcctt ccacgggtgg tacctgttgt
     3421 gggccctccc gctcctcgcg acgacggtcg accgccgccg gtgggtcacg gccctggccc
     3481 tggtcgcctc gctgatgtgc gtcttcgtgc tccccggcgg atatggcctg gctctggtga
     3541 cgacctgggt gggggtgccg ctctacttcg tcgccacccc ggtgctcgtg atgcgcgccg
     3601 tcagctgggc gcgctcctac gcctggggtg agctcttctc cttggcggga gccggcacgc
     3661 gcacccacca gcccagccgc tcggcatagc ggctgggctg gtgcagcgct gtcagcgcca
     3721 gcgtcagccc acggtcggca gcacctgggt gtgctcgatc cgcacggcct gcagcgacct
     3781 cgggtcgagg cccagcaggc gcaggatcga gggggcgatc tgcgtcgtct cgacttcggc
     3841 attcacggtc tcgccgcggt gggagccggg tccggcgatg acgagcggga cgtcgcggtc
     3901 ctgcgggtcc gccccaccgt gctcggcgat cttggccttc ccgccggtgt agaccacgcc
     3961 gtgctggacg atgcccagga catcggggtg gcgcgagtcg gaggcggcga ccccgaagaa
     4021 ccttgccgcg tccttgccgg catacaccgt ggcgagccct gaggcagcca cggtgcgcgg
     4081 agccccgttg atgtcgttgc ccgcggccga gtggctcttg aggtagttgg ccgcgaacgt
     4141 ggtcgcctca gccgcacggt tcgacagcca cagctgcatg atgtcgtcgt tggtggacat
     4201 ggccaccagg gccggggcgg tgggatgggt ggccttccac gccgcgttga gcccgtcgat
     4261 gatcgcgcca tccggcaccc gggtcagcgc agacggcttc gtcggggact gtgcgtgctt
     4321 ggcggacagg atgaccgtgg tggtcttgcc cagaccgcgg tccgcgatct cgcgctcgaa
     4381 ggagcccacc gaagcgttga tgaagtccaa tgccttggcc agcaacggcc ccggggtcac
     4441 gccgtcggcc aggtagccgc ccttcagccc gtcggagacc ggcagcttct cagcggtgga
     4501 gaccgactgg aagttcatgc cgaaaacccc cggcacgcct gccttggtgc tgcgcgaatg
     4561 gtcgtacccg tcgatctcgt tgaggacggc cttcaccttg tacccgtcgt actgctgggt
     4621 cgcggcgttg tcctgggtcc agtcgatccc gccggggtag cccgtcgcct tgctgttgat
     4681 ctccggcgcg aacaggtcgt caagacccga gccggagggc ccgccgagga tttcgtatgc
     4741 cgggtgcttg tccgaccacg cggtgtgcag gccggcgcgc ttggccacct cgaacacggt
     4801 gttcacatgc aggtactggt gggggtagac cggcgtacag gacttcgggt cgaccgggag
     4861 ctgggcgcgg tcgagcagac ttcccggatg accggtcatc ttcaggatgc cgtccggaag
     4921 gttggacagc ccctgtcccg cgtcgagcgc ctgcgggtcc ttgtcggcag cctccgtgta
     4981 ggccacctcc gcacccggag tggcgcccgc gcagctggtg gtcccggccg gcagcagcgc
     5041 gtggttgaag gtgtcgtcgt agtacacgcc cgtggttcgg gggttgccac cggtgacctg
     5101 tccgaccatc ccggggaacg agtccgaggg caccggggtc tgggcgcggg tgaagctcgt
     5161 gccgccgtgg accagcgcgg cgagcgcgga gtgggggtgc tggcgcacgt accaggtgag
     5221 gtcgcgctgg tgcataccgt cgaccgacag caggagaacg tgctgcggcg tctgacgccg
     5281 accagtggtg gagtccgtcg tggcgttggc gctcgacgct cctgcggcga ccgccgcgat
     5341 gactgcggtg gcgcacagcg cgccacccaa cttcgttgag ttcatgggta cctgtcctca
     5401 gagcgaaacg ggtgcccgct ggcacccaag ctccagaaga cctcccgcag tcgaaggcca
     5461 cgtgacgaca gggtgaacag tgatggcccc ccgactgacg tcggggggcc atcactcagg
     5521 cgaggctcag gcgtcgcggc gcctgagcag gacagcggcc cccgcaagca ccaccgcggc
     5581 atacccgcag aagagggcga acccacccca cgggctcagc agagtcgggt cggcatggac
     5641 gtgcgtgatc ccctcgccca acgtgctggg gaggtacttg tcgatcgggt cggaccagga
     5701 cgacggcagg aaccgcacga tgatcggcag gacgaacagg atgccgaaca gcgtggagat
     5761 cgccgcagcg gtgttgcgca acagggcgcc gagtcccagt cccaggatgc cgatcaccgt
     5821 gagatagagg gcagctccga tgacggcgcg caggacaccc gcgtcaccca gggacgtctg
     5881 caggttcttg cccttgagga tcgactggcc gatgaggaag gccgccagca ccgccgggac
     5941 cgtcacgacc agggtggtcg tggcgaacac gacggtcttg gcccacaaca ccggcagtcg
     6001 ggtgggcacg gccgcgaacg tggcgcggat catcccggtc gcgtactcgc ccgagatcag
     6061 caggatgccg agcacgccga tcgccagctg cgccaggaag atacccgcca ggcttcggct
     6121 ggtcgggtcg aacaacgcgg cctcgcccgg gttgcgcggc ggccagtggg cgaccgtgac
     6181 cgagggcacg agcacggcga gtccgatgat gaagacgacg gccgcgagca gcgagaacac
     6241 tgtcgagcgc aaggatcgga gcttggtcca ctcggagagc aggacgcgcg cctgggtgac
     6301 gttcttcggg gtttgacggg acccccgccg agaagtggct ttcgtggccg tggcggtgct
     6361 catcggtcga ctccggaagt ctcgaggttg atggctgggg tactggacgc tggggtgctg
     6421 gtcgtggagc cgtggtactc gaccgagtcc ttggtcagat ccatgaaggc ttcctcgagc
     6481 gaggtctgct cggcggacag ctcgaggagg gtgactccgg ccgcacccgc ggcaaggccg
     6541 acctggtcgg tggtcacgcc ttcgacctcc aggctgtccg ctcccgtgac cgacaccgtg
     6601 acgtccgggg cagacaggat ctcagcgaga cgaggcacgt cggtggtgcg cacgcgcact
     6661 cggttgcccg acgaggaggc gatgaagtca gccacgctcg tgtcggcgat gagccgccca
     6721 cggcccacga cgacgaggtg ctcggccgtc tgcgccatct cgctcatcag gtgcgaggag
     6781 acgaacacgg tgcgcccctc ggcggccagg gacttcagca ggttgcggat ccagcggatg
     6841 ccgtccgggt cgaggccgtt gaccggctca tccaggatca gcgtctgcgg gtcgccgagc
     6901 agggccgagg cgagcccgag ccgttggccc atgccgagtg agaacccgcc ggcccgcttg
     6961 cgcgcgacct cgccgagccc gacgagatcc acgacctcct cgacccgacg cttggagatt
     7021 ccagcggtct gcgcgagcgc cagcaggtgg ttgaacgcgg tgcgacccgt gtggaccgaa
     7081 cgagcctcga ggagcgcgcc gacctcgctg agcggggccc ggtggtcccg gtaggccttg
     7141 ccattgacgc ggacggtgcc ggcattcgga gcatccagac cgatgatcat ccgcatggtg
     7201 gtggacttcc cggcgccgtt gggaccgagg aagccggtca ccacccctgg gcggaccgtg
     7261 aaggtcaggt cgtcaacggc cactttgtgc ccgtagtgct tggtgagacc cctggcctcg
     7321 atcatggctg ctcttccgtc gatgagtgct ggcgcaagga cgaccagccc gcccctctgc
     7381 cagggccagg agaaggatgt cggaggtgcc tgtgggcatc ctgagacttc tgtgcatgcc
     7441 ggctgtgcgc ggccccggcc tgatcagcgc ccgttcagga acctgacagt tggctttgcc
     7501 atactgcggc accatgcccg cagccgcgcc ctccccagtc cgatccgatg ccacctctcg
     7561 ctcgctgctc agcaaggtcc ccgaggtcac ggccatcttc tgggtcacca aggtgctgac
     7621 caccgggatg ggcgagacgg cctccgactt cctcgtgcgg cgcatcaacc ccttcctcgc
     7681 cgtcgccctc gggttcgtgg ccttcgcggt ggcgctggtc cttcagctgc gcgctcgccg
     7741 ctatgtgccc tggatctact ggctcgctgt ctccatggtg agcgtgttcg gaacgatggc
     7801 cgccgacgtc gtgcacatcg ggttcggggt gccctacgtc gtgagcaccg tggcgttcct
     7861 gctggcgctc gcggccgtct tcgccgtctg gaacgccacc gagcacaccc tgtcgatcca
     7921 cagcatctac acccgccgac gtgagctctt ctactgggcg acggtgttga cgaccttcgc
     7981 cctcggcacc gccgccggcg acatgacggc gtcgaccatg cacctgggct acttcgcctc
     8041 gggcgtcctg ttcgccgtgg tcatcgcgat cccggcactg gcgcactggc gcctcggcct
     8101 gaacgcgatc gtggcgttct ggttggccta catcgtgacc cgtccgctcg gagcctcgtt
     8161 cgcggactgg ctcggggttc ctgccagccg acgaggtctt gacctgggca ccggcccggt
     8221 gacgctgacg ctggccgcct tgatcgccgt tctggtcggg tacctcacgg tgacgcacgc
     8281 cgatgtgccc gaacaggagc gcgaggcggc cttgacctca actgggaact gagcggtcga
     8341 gggtcgagac gcggactcct tctacaggaa ctgggcgtcg gagtctgcgc cgaaacaggg
     8401 cgaggggttg gccaggtaac caccggttgc cgcccccaga accagccggc gacgcacctc
     8461 gcgcatcaac tcgtcgttgg ggatcgtgct caccgactcc acgtgctcag gggcgacctc
     8521 gacgtgcagc ccgcacgccc gtgccgagtg cagcaccacg tcgcggagct ccacgttgaa
     8581 ggcccgcgcg atggagagca tcatctccgg ctcaggccac tgcatgagta ccggcgagtc
     8641 gaggatcgcc tcggcttcgt accgatcgag cccggagcgc tccacgagcg cctcacggct
     8701 ccagcccagc aggcccatct gctcctgcac gtagctgccc aaactgttgg tcacggacga
     8761 ctcctgttct gacagcgtca tggttgacga caccattcca gcgcttgaga atggcccgcc
     8821 agggcagact ttgccaagcc ttgactattc agtcggccgt tcgggcgacc ctgcctcgtc
     8881 ctatccggtc aatccccgcg cgtcaatccg agctcgcgaa gcacttcttc ggtatgccgt
     8941 cccggccgga ccgcgggtgt cccggtccgc gcggggcttg cggaaaaccg cggtgcggca
     9001 ccgggctgga ccggcgtgcc agggcccggc tgcacggcat acgtccctcg cgcgaccagg
     9061 tgggggtcgg ccgcagcctc agcggcggac agcacgggcg cgacacaggc gtcgagcccc
     9121 gcgaatacct cgacccactc ttgacgtgat cggctcgcga agacgtcctc gaagacccca
     9181 gccacccgcg tccagccggt ctcgtccagc tggtcagcag ccaggtcatc aggggccaga
     9241 ccgagccccg cgagcagtcg ctcgtagaac accggctcga tggcgcccac cgccatccac
     9301 cggtcatccc gggtgcggta gcagcggtag aagggcgcac cgccgtcgaa caggttctga
     9361 ccacgaggtg cgctccacat ccccgagacc agcatcgcct ggtgcattgc cgtcatcgac
     9421 gccaccccgt cgacgatggc cgcgtcgacg acctggccca ccccggtggc ccgcgagtgc
     9481 aggagcgcgg agaccacgcc gagcgccagg agcatcccgc caccaccgaa gtcgccgagc
     9541 aggttcagcg gcggcacggg acgtccgtcc gcgcccgcga aggcctcgag tgccccgctc
     9601 acggccagat aggtgaggtc atgcccggcc agcgccgcgt agggcccgtc ctgcccccag
     9661 cccgtcatcc ttccgtagac caggcgcggg ttgcgcgcca gcgcatcggc cggaccgaaa
     9721 ccgagccgtt ctgcgacgcc cggccggtag ccctcgagga gcacgtcgga ccgctcggcc
     9781 agcgcgagca cggcgtcgcg tccgagctcg gtcttgaggt ccaggacgac cgagcgccgg
     9841 ccgcgcagca gcacctggtg cgtcggccac aggtcctcgc ccgggcggtc gatgcgcacc
     9901 acgtccgcgc ccagatcggc gagcagcatc cctgcgaatg gcccggggcc gatcccgccc
     9961 acctcgacga cggagactcc cgtcagcggc cctgcctgag gcgcatcagt catgcgggaa
    10021 aggtacctgc caaccagccg cgcgctggca cggcaacatc agcgcgcgga tttctgcgca
    10081 gggggttggc ggtgcgccgg gccctgctcc cggcggccgc ccccggtaca gcggctggtg
    10141 tcagatgacg tcagcaagca acgcgcggac ttcggcctcg cggtagcgtc gatgaccgcc
    10201 aagcgtgcga atcgagttga gcttccctgc cttggcccaa cgggtcaccg tcttggggtc
    10261 cacccgaaac agcgatgcca cctccgcggg cgtgagcaac ttctccacct cggtggttcg
    10321 aacaaccatg atctctcctc atgcagggga tgtccctcaa taatcggaca caagggaccc
    10381 aatgggaaca ttccttacgg atgatccggg atggctcgga cggactagtc acacgtccag
    10441 aacctgggca ggaatacgat ttcagccagg cgcgtgaccc gtgccgtcct ccgcgtccac
    10501 ccgacgcccc cgagccgaag gagtcaccac cgtgaccgcc ccgtcgccca tcccaccgcc
    10561 agccgagctg cacccgatcg atgcctcagg gcacgagcag gtcgtcttct gtcatgacag
    10621 gaccaccggt ctgcgcgcca tcatcggcat ctacagcacg gcactggggc ccgccctcgg
    10681 gggcacgcgc ttctatccgt acgccacgga ggaggccgcc ctgggcgacg tcctgcgcct
    10741 gtccaagggg atggcctaca agaatgccgt cgcgggtctg gacctcggcg gcggcaaggc
    10801 ggtcatcatc ggcgacccgg cgaccgacaa gacccccgag ctgctacgcg cctacgggcg
    10861 gttcgtggag agcctcggcg ggcgctacgt caccgcgtgt gacgtgggca cctacgtcgc
    10921 ggacatggac atcgtcagcg agacgacccg gttcgccacc ggtcgctccg aggccaacgg
    10981 tggcgcgggt gactcgtccg tgctgacggc ctacggagtg ttccaggggc agcgagcctg
    11041 cgctcagcac ctctggggcg aggcgacgct caagggccgc accgtgggga tcgccggcgt
    11101 cggcaaggtc ggccgcatcc tcaccgggca cctggtggag gacggggcga acgtcatggt
    11161 caccgacgtc aacgcggagg cgctggccgc cctcaaggcg cagtacccgc agatcgaggt
    11221 cgtcgccgac acc
//
LOCUS       DASYFY010000329         3472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1075951, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000329 DASYFY010000000
VERSION     DASYFY010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3472
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1075951"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(207..974)
                     /locus_tag="VGN19_06685"
     CDS             complement(207..974)
                     /locus_tag="VGN19_06685"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEV7195607.1"
                     /translation="MNPTFDFTGQVALVTGASSGMGLATARAFAQAGAAVVLADINAE
                     ALTREAHALTADGQRVLAVTCDVADESNVAAAIATAVNTFGRLDLAFNNAGIQAPPID
                     AADEPAEVFDRVNAINLRGVWACMKHELTVMREQGSGAIVNCSSLGGLVGLPGRAAYH
                     ASKHGVIGLTKSAALQYAPRGIRINAVCPGTIATPMVEDMIAKGELDHDEAVANQPIN
                     RLGRADEIAAAVLWLCSPGASFVVGVALPVDGGYTAR"
     gene            complement(1010..1369)
                     /locus_tag="VGN19_06690"
     CDS             complement(1010..1369)
                     /locus_tag="VGN19_06690"
                     /inference="COORDINATES: protein motif:HMM:NF037716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like fold protein"
                     /protein_id="HEV7195608.1"
                     /translation="MLIKITIGDRSFHATLADSTASRDLVAQLPLTVAMVDHGGVEKT
                     GPLPAALSLEGQPGGADPDVGDVGYYSPGHDFVLYYGDQSYYDGIVILGRLHDGAAES
                     IAGIRGPVTAIIETVPA"
     gene            complement(1623..2642)
                     /locus_tag="VGN19_06695"
     CDS             complement(1623..2642)
                     /locus_tag="VGN19_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEV7195609.1"
                     /translation="MRQVVMYGPGDVRVEQRDDPRILENTDAIIRLAATSICGSDLWR
                     YRGTEPVDHQVMGHEYVGVVEEVGSEVRTVKVGDFVIGSFWASDNTCDICRAGYQAYC
                     VHRVLMGTIGTQSELARIPLADGTLVATPGHPDAQLIPSLMAASDVLGTGWFAAVAAE
                     AGPGKTVAVVGDGAVGLLGVLAARELGAERIIAFSRHADRQALAREFGATDIVEERGD
                     AGVARVKELTDGLGAHSVIEAVGTQEAMMQAIHSTRPGGHVGFVGVSHDVAIPGDALF
                     MAGIHLHGGPAPVREYLPELIQLIWDRRIDPGKVFDLTLPLDRAAEGYQAMDQRTAIK
                     VLLTL"
     gene            2818..>3472
                     /locus_tag="VGN19_06700"
     CDS             2818..>3472
                     /locus_tag="VGN19_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018185500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7195610.1"
                     /translation="MDNRQEVREFLTTRRARITPGQVGMPTTGSRRVPGLRRSEVAAI
                     AGLSVEYYAKLERGQIAGASTGVLGALARALQLDETERAHLFDLARSADGVPTSGRPR
                     RRALSKAAPRLSLQWALDAITEGVAFVRDPRQNLLATNALGRAFYSPVIGDGGRAPNL
                     ARFQFLDRASRDFYPDWEMFAAMCVGIMRAEAGRDPHDRVLQDLVGELSTQSETFRQL
                     "
BASE COUNT          516 a         1121 c         1258 g          577 t
ORIGIN      
        1 ccccgggggc gaagtggacg gcgttcatcc gcagccgcga gggcgcctcg cccttgatga
       61 tctggtcgaa ccagacgtcg ccggcgaaca tctgggccgg gcctttcacc gaggcgcgcg
      121 ggtaggcggg ttggttcagt cccgcagtca tagttcatag cctccattgg ttggtgaagc
      181 ggtcgcgccg ctgttcggcg gcggtgtcag cgtgcggtgt aacccccgtc gacgggaagg
      241 gcgactccga cgacgaagct cgcaccgggg ctgcacagcc acagcaccgc ggccgcgatc
      301 tcgtcggctc ggccaagacg gttgatgggc tggttagcta ccgcctcgtc gtggtcgagc
      361 tctcccttgg cgatcatgtc ttcgaccatg ggtgtggcga tggtgccggg gcagaccgcg
      421 ttgatgcgga tgcctcgggg cgcgtactgc agggcggcgc tcttggtgag gccgatgact
      481 ccgtgcttgg acgcgtggta ggccgctcga ccgggaaggc cgacaagtcc gccaagtgag
      541 gagcagttga cgatcgcgcc gctgccctgc tcacgcatga ccgtcagctc gtgcttcatg
      601 cacgcccaca ccccgcgcag gttgatggcg ttgacccggt cgaagacctc ggcaggctcg
      661 tcggcggcgt cgatgggcgg agcctggatc ccggcgttgt tgaaggccag gtcgagacgc
      721 ccaaacgtgt tgactgcagt agcgatggcg gcggcgacgt tggactcgtc ggcgacgtcg
      781 caggtgacgg caaggacccg ctggccatcg gcggtgaggg cgtgtgcctc ccgggtcaga
      841 gcctcggcgt tgatgtccgc caggacgacg gcggcgccgg cctgggcgaa tgctcgggcg
      901 gtcgccaggc ccatgccgga gctggctccg gtgaccagag ccacctgtcc ggtgaagtcg
      961 aaagtcgggt tcatcaggtc tcctgaacaa ctttgcaggc gggggacggt caggcaggga
     1021 cggtctcgat gatcgcggtg acgggaccgc gtatgccggc gatgctttcg gctgcgccgt
     1081 cgtgtagtcg acccaggatg acgatgccgt cgtagtagga ctggtcgccg tagtagagaa
     1141 cgaagtcgtg gccgggagag tagtaaccga cgtctcccac gtcggggtct gcaccgccag
     1201 gttgaccttc cagggacagc gctgcaggca acgggccggt cttctcgacc ccgccgtggt
     1261 cgaccatcgc gacagtcagt ggcagctgcg cgacgaggtc tcggctggcg gtgctgtcag
     1321 cgagggtggc gtggaaactc cggtcgccta tggtgatctt gatcaacatt cggtcttcct
     1381 gatcggtctc gggagcgagt ggggttccgg tcgcggtgcc tggcgtggga ctcatctgac
     1441 cgggacttga ggcgcccgac gcgcggctgg gtgatggcac accggttgtg gacgggccgc
     1501 ttgaggtgcc ggcgacgcca cagccagcca gggccaatgc cactgctgcg gtgagcagcg
     1561 cggctaagga gtcgcgtccg gagggcatcg ggtttctccg tgtggctggc gtggctgggt
     1621 tgtcagaggg tgagcaggac cttgatggcg gtgcgctgat ccatcgcctg gtagccctcg
     1681 gcagctcggt cgaggggcag ggtgaggtcg aagaccttgc cggggtcgat cctgcgatcc
     1741 caaatgagct ggatgagttc cggtaggtac tcccggacgg gggcggggcc gccgtggagg
     1801 tggatgccgg ccatgaaaag ggcgtcgccg gggatggcga cgtcgtggga gaccccgacg
     1861 aagccgacgt ggccccccgg gcgggtggag tggatggcct gcatcatggc ctcctgggtg
     1921 ccgacggcct cgatgaccga gtgggcgccc agcccgtcgg tcagctcctt gaccctcgcg
     1981 acgcccgcgt cgccacgctc ctcgacgatg tcggtggcgc cgaactcgcg agccagggcc
     2041 tggcggtcgg cgtgacggct gaaggcgatg atgcgttcgg cgccgagctc ccgggcagcg
     2101 agaactccca gcaggcccac agcgccgtcg ccgacgaccg cgacggtctt gcctgggccg
     2161 gcctcggcgg cgacggcggc gaaccagccg gtgccgagca cgtcggacgc cgccatgagc
     2221 gacggaatta gttgcgcgtc tgggtgcccg ggcgtggcga ccagggtgcc gtcggccaac
     2281 ggaatgcggg ccagctcgga ctgggtgccg atggtgccca tcaagacgcg gtgcacgcag
     2341 taggcctggt agccggcgcg gcagatgtcg caggtgttgt ccgaggccca gaacgacccg
     2401 atgacgaagt cgccgacctt cactgtgcgg acctcggagc cgacctcctc aacgactccc
     2461 acatactcgt ggcccatcac ctggtggtcg accggctcgg tgccgcggta gcgccacagg
     2521 tcgctgccgc agatgctggt cgcggccagc cggatgatcg cgtcggtgtt ttcgaggatc
     2581 cgcgggtcgt cccgctgctc cacccggacg tcacccggtc cgtacatcac aacttgacgc
     2641 atcgcgcgcg ctcctgttcg tagcttcgca ggcgacgcgt ggcgcaagcg gggatccgtc
     2701 ctacatgatc gagtcaacca cccgaacccg cgacgcggga gtccctgctg atgggtgtac
     2761 tgagagggca cccttcgtcg ctgcgttggg tggaagatgc cgtttagggt tgcggccgtg
     2821 gacaaccgac aggaagtgcg cgagttcctg accacccgcc gcgcccgcat cacccccggc
     2881 caggtcggca tgccgaccac tggcagtcga cgcgtccccg ggctgcgccg cagcgaggtg
     2941 gcagccatcg ccgggctcag cgtcgagtac tacgccaaac tcgaacgagg tcagatcgca
     3001 ggtgcctcca ctggggtcct gggggcgctc gcacgtgcgc tgcagctcga cgagaccgaa
     3061 cgtgcccacc tgttcgacct cgcgcgatcc gccgatggcg tcccgacgtc tggccggccg
     3121 cggcgtcgtg ccctgagcaa ggccgccccg cggctgagcc tgcagtgggc gttggacgcc
     3181 atcaccgagg gcgtcgcctt cgtccgcgac ccccgacaga atctgctcgc caccaacgcc
     3241 ctcggccgcg ctttctactc accggtgatt ggcgacggcg gccgcgcgcc gaacttggct
     3301 cggttccagt tcctcgatcg cgcctcgcgc gacttctacc cggactggga gatgttcgcc
     3361 gcgatgtgcg tggggatcat gcgcgccgaa gccgggcgcg acccccacga ccgcgtgctc
     3421 caggacctcg tcggcgagct gtccacccaa agcgagacat tccgccagct tt
//
LOCUS       DASYFY010000330         3331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_917092, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000330 DASYFY010000000
VERSION     DASYFY010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_917092"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..623)
                     /locus_tag="VGN19_06705"
     CDS             complement(<1..623)
                     /locus_tag="VGN19_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195611.1"
                     /translation="MVLLGLLLILIAAGLAVWLVLGSQSLHTPINLDTPGFKIGMTPL
                     ALLIAGAVILLVFWLGWALIRASVRRRRRPVRESKEEQRRAELEENIRAYERARAEDG
                     HRTALTERDRVRDEEFESQLTERDRLRDEDERRRLAEADQNARADERARVEEEFRQRS
                     AMAGSTGGLEGAAGAGAAAGTARHRDPDAVPDGDLAVDPTAADTTTR"
     gene            complement(701..3046)
                     /locus_tag="VGN19_06710"
     CDS             complement(701..3046)
                     /locus_tag="VGN19_06710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEV7195612.1"
                     /translation="MSTRASTPPPGPAGFDPAATLGRLTAGSRAERLLHVHEVPARPA
                     SLVAWPTWVDPSVYAAVAGSGVTALWSHQREAADLAHRGKHVVMATGTASGKSLGYLL
                     PVLSDLVAGSTAPTGRGATALYLSPTKALAADQLARIQALAVPGVRAATYDGDTASDE
                     RRWIRDHAQFVLTNPDLVHHSLLPLHERWAPFLRALQYVVVDECHVYRGVFGSHLAAL
                     LRRLRRVCARYGSHPTFVLASATVRDPGDHASRLVGMPVQAVTQDGSPREALTFALWE
                     PGTLADGDTRRSATSEAADLLAALVADRVQTVAFARSRAGVEALAASARRTLAETRPE
                     LEAAVAAYRGGYLPEERRALERSLRDGSLVGLAATNALELGIDITGLDAVLLAGWPGT
                     RASLWQQAGRAGRSGARSLAVFVAADDPLDTYVVHHPEVVFGQPVEATVLDPQNPHVL
                     APHLAAAAAELPLRDGDLELFGPTAGELLGALVARGILRRRPTGWYWARSDRASDHVS
                     LRGAGEVIGIVEQRSGRVLGTIDEASAHSQAHTGAVHVHQGDTYVVTNLDLEGGTATV
                     VRGDPGWSTFAQSVSAFDIVGAERTKAWGPVQVSFGSVRVHTQVSSFLRRLPSGEVIG
                     THPLDLPARTLATKAVWWTMPVELLADGGVGEPEIPGAAHAAEHAGIGMLPLVATSDR
                     WDIGGVSTALHPDTGLPTILVYDGYPGGAGFAERAFDAFEPWLRATLETISSCGCERG
                     CPGCVQSPKCGNGNEPLDKLGAVRLLSTVLSHAPAGPVPTS"
     gene            3118..>3331
                     /locus_tag="VGN19_06715"
     CDS             3118..>3331
                     /locus_tag="VGN19_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014061729.1"
                     /note="This anti-anti-sigma factor, or anti-sigma factor
                     antagonist, belongs to a family that includes
                     characterized members SpoIIAA, RsbV, RsfA, and RsfB;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0045152 - antisigma factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HEV7195613.1"
                     /translation="MDLSVSSTEQGAVTVVHVAGEIDVYTAPLLREVLDKQVAAGRTN
                     LVVDLEKVTFMDSTGLGVLVGRLKLVR"
BASE COUNT          521 a         1145 c         1178 g          487 t
ORIGIN      
        1 aaccgggtgg tggtgtcggc ggcggtggga tcgaccgcga gatcaccgtc ggggacggcg
       61 tcagggtcgc ggtggcgtgc ggtgccggct gcagcgccag caccggcggc tccttcgagg
      121 cccccggtcg acccggccat ggcggagcgc tgtcggaact cctcctcgac ccgggcgcgc
      181 tcatctgcgc gagcgttctg gtcagcctcg gccaaccggc ggcgctcgtc ctcgtcgcgg
      241 agtcggtcgc gctcggtgag ctgggactcg aactcttcgt cgcggacccg gtctcgctcc
      301 gtcagcgcgg ttcggtggcc gtcctctgct cgagcgcgct cgtacgcgcg gatgttctct
      361 tcaagctcag ctctgcgctg ctcctccttg gactcccgga ccgggcgtcg acgccgcctg
      421 acgctggctc ggatcagcgc ccatcccaac cagaacacca gcaagatcac ggcgcctgcg
      481 atcaagaggg ccaacggggt catgccgatc ttgaagcctg gcgtgtccag attgataggg
      541 gtgtgcaacg actggctgcc aaggacgagc cacacggcca atccagcagc gatcaggatc
      601 agcaacagtc caagcagaac cacgagggca cctccaagtt cgcggcgtcg gtgtacgccg
      661 gtggttcgac cctagccccg gaccaggcgg tatgcccctt tcacgaggtt ggcacggggc
      721 ctgcgggggc gtggctcaac accgtggaca gcagtcgtac ggcccccagc ttgtctagcg
      781 gctcgttgcc gttgccgcac ttgggcgact gcacacagcc cgggcagccc cgctcacatc
      841 cgcaggacga gattgtctcg agggtggctc tgagccacgg ctcgaacgcg tcgaacgccc
      901 gttcggcaaa gccagccccg cctggatatc cgtcatagac caggatcgtc gggagaccgg
      961 tgtcggggtg tagggccgtg gagaccccac cgatgtccca cctgtccgag gtcgcgacca
     1021 gcgggagcat tccgatgccg gcgtgctccg cggcgtgggc cgcacccggg atctctggct
     1081 cgcccacacc accatccgcc agcagctcca ccggcatcgt ccaccacacc gccttggtcg
     1141 ccagcgtccg ggctggcagg tcgagtggat gggtcccgat gacctccccg ctcggcaggc
     1201 gcctcaagaa cgagctcacc tgcgtatgca cgcgcaccga gccgaacgac acctgcacgg
     1261 gcccccaggc tttcgttcgt tcggcaccga cgatgtcgaa ggcgctgacc gactgcgcga
     1321 acgtgctcca gccggggtca ccccgcacga ccgtggccgt cccgccctcg agatccagat
     1381 tggtgacgac gtaggtgtca ccttggtgca cgtgcaccgc cccggtgtgg gcctgcgagt
     1441 gcgcggacgc ctcgtcgatg gtgccgagaa cccggccgct gcgctgctcc acgatcccga
     1501 tgacctcgcc tgccccgcgc agcgagacgt gatcgctggc tcggtcagac cgggcccagt
     1561 accagccggt gggtcgacgg cgaagaatgc cacgggccac gagggccccc aggagctcac
     1621 ccgcggtcgg gccgaacagc tcgaggtcgc catcgcgcag aggcagctcc gcggccgcgg
     1681 cggctaggtg cggtgccagc acgtgcgggt tctgcgggtc cagcacggtg gcttccacgg
     1741 gctggccgaa caccacctcg gggtggtgca cgacataggt gtccaacggg tcgtcggcgg
     1801 cgacgaacac ggctagcgac cgggcaccgc ttcggcccgc gcggcctgcc tgctgccaga
     1861 gcgaggcgcg cgttccgggc caaccggcga gcaacactgc atcgagcccg gtgatgtcga
     1921 tgccgagctc gagggcgttg gtggccgcca ggcccacgag cgaaccgtcg cgcaacgacc
     1981 gttccaaggc gcggcgctcc tcagggagat accccccgcg gtatgccgcg acggctgcct
     2041 ccagctcggg gcgggtctcc gccaaggtcc gtcgagcgct ggcggccagt gcctcgaccc
     2101 cggcccggga tcgggcgaag gcgaccgtct gcacccgatc tgccaccagc gcggccagca
     2161 ggtcggcggc ctcggaggtg gcggagcgcc gagtgtcgcc gtcggcgagg gtgccgggtt
     2221 cccacagcgc gaaggtcagg gcctcgcggg gtgagccgtc ctgggtgacg gcctggaccg
     2281 gcataccgac aaggcggctg gcgtgatcgc cggggtcgcg gacggtcgca gaggcgagca
     2341 cgaacgtcgg gtgagagcca tagcgtgcgc acacgcgccg caaccgtcgg aggagtgcgg
     2401 ccaggtgcga gccgaacaca ccccgataga cgtggcactc gtcgacgacg acgtactgca
     2461 gggctcggag gaacggggcc caccgctcgt gcagaggtag cagggaatgg tggaccaagt
     2521 cagggttggt gagcacgaac tgggcgtggt cccggatcca tcgacgctcg tcactcgcag
     2581 tgtctccgtc ataggtggcc gctcggacgc ccggcacagc caacgcctgg atccgggcca
     2641 gttggtcggc agcgagagcc ttcgtggggg agaggtacaa cgcggttgcg ccgcgtcccg
     2701 tgggagccgt cgaaccggcc accaagtccg acagcacggg taagaggtac cccaggctct
     2761 tgccggaggc cgtcccggtg gccatcacga catgcttccc ccggtgggcc aggtcggccg
     2821 cctcgcgttg gtgcgaccac aaggcagtca ccccggaccc ggcgaccgcg gcatacacgc
     2881 tgggatcaac ccaggtcggc caggccacga gcgatgcggg gcgggcaggc acctcgtgga
     2941 catggagcag gcgctcggcc cgcgaccccg cggtgagccg cccgagagtc gccgcagggt
     3001 cgaaacccgc tggtccgggg ggtggcgtgc tagcgcgggt agacattgcc gctaccgtaa
     3061 tcctgaggcg gaccgcgttg gcggctgctc gccatggagt cgagtgaaag ggtgaccgtg
     3121 gatctttcgg tctccagcac ggagcagggc gccgtcacgg tggtccatgt ggctggcgag
     3181 atcgacgtct acaccgcacc cctgctgcgc gaggttctcg acaagcaggt cgctgcggga
     3241 cgtacgaacc tcgtcgtaga cctcgagaag gtcaccttca tggactccac cggactcggc
     3301 gttctggtgg gtcgtctcaa gctggttcgc g
//
LOCUS       DASYFY010000331         4578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1442937, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000331 DASYFY010000000
VERSION     DASYFY010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1442937"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..1228
                     /gene="hppD"
                     /locus_tag="VGN19_06720"
     CDS             29..1228
                     /gene="hppD"
                     /locus_tag="VGN19_06720"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HEV7195614.1"
                     /translation="MTDALTQDELKADLTLEQLQQLVGLVEYDEDKDVFPVTGWDAIV
                     FVVGNASQTAHYYQSAWGMELVAYSGPENGQRDHKSFVLKSGSIRFVVNGAVSPDSPL
                     IDHHARHGGGVVDISLEVPDVDRCVARAKACGARVVREAEDLTDEHGTVRIASIATYG
                     ETVHTLVDRSRYDGPYLPGYQRAKSSYVKREGAPKRLFQALDHIVGNVELGKMDEWVQ
                     FYNKVMGFVNMAEFIGDDIATDYSALMSKVVANSNHRVKFPLNEPAIAKRKSQIDEYL
                     EFYNGPGAQHLALATGDILRTVDELRANGIEFLDTPDSYYEDPELRARIGEVRVSIEE
                     LQSRKILVDRDEDGYLLQIFTKPLGDRPTVFFEIIERHGSLGFGKGNFKALFEAIERE
                     QDARGNL"
     gene            1271..2089
                     /locus_tag="VGN19_06725"
     CDS             1271..2089
                     /locus_tag="VGN19_06725"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEV7195615.1"
                     /translation="MDMPTRAGWFDDPADPDQLRYFDGVIWTNHTTPRVTRTAPAPQP
                     AQAQQGPAGWSAPGAQLGQAPTPGGPGQQPQWTTPTYPGMYRRPTTPDGQPLASYGQR
                     VGAFLIDWVIQLAISGILGSYFLVKAFSGYVDAFRTAMNQAQSGQQPDVAHLVSTIDS
                     TALMLYSIVSIVVFAVYQFGFLTRSGRTPGKAAVGISVRLRERPGPPPAEAVLRRVGL
                     PVALFLFQFAPYVGALAVLARALDLLWPAWDNQRQALHDKVAATVVVVGEQPRG"
     gene            complement(2128..3348)
                     /gene="fahA"
                     /locus_tag="VGN19_06730"
     CDS             complement(2128..3348)
                     /gene="fahA"
                     /locus_tag="VGN19_06730"
                     /EC_number="3.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004334 - fumarylacetoacetase activity
                     [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetase"
                     /protein_id="HEV7195616.1"
                     /translation="MTTNQFWLDLPEGHPFGIDNLPYGVFSTDSLSPRVGVRIGDQVL
                     DAGACAEQAGMESGEVWLTPSLNAFLEQGRQAWSAARAFLREQLTNELHQDTVRPHLH
                     RLEDVHLHLPVEVADYVDFYASEHHATNVGRIFRPDSEPLTPNWKHLPIGYHGRAGTI
                     VVSGTDVVRPTGQRKAPTEATPTFGPSIRLDIEAELGYVVGESTRLGDRVSVDEAQEH
                     LFGVVLLNDWSARDIQAWEYVPLGPFLGKSFATSISPWVVTMEALAEARVDVPGQDPE
                     PLGYLRGQAAPRGLDVHYEVDLNGTVVSRPEYRDVYWAPEQMLAHLTVNGASLRNGDL
                     FGSGTISGTAKTSRGSLLELSWNGTEPISLEDGTSRSFLEDGDQVTLRAWAPGPGGSR
                     IGLGEVSGTVQPAR"
     gene            complement(3350..4201)
                     /locus_tag="VGN19_06735"
     CDS             complement(3350..4201)
                     /locus_tag="VGN19_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195617.1"
                     /translation="MTLLSDAVADHQAEPTLFSALVDDAAVFPPGNAPLAAAVRLHRL
                     HRHSGYAAIVGPLLVPAAAAAELLELVGDEPLRVVVVARPGTPVGQVTDALALLRTRP
                     EVQVSAVELGWTPGWRDAGLEPPLTLEVPRGDTQAQALADLAAGATDSVVLQAKFRTG
                     ATPTWPWPDETELATFIRAAIDHDLGFKLTGGLHHAVRGRYADEEQHGLLNVLTAVRW
                     ALNGEDVDELVPLLSERDPAALVPQVTRMSAADAAIVRAFFTAYGCCAVTDPIGELTT
                     LALIQGA"
     gene            4330..>4578
                     /locus_tag="VGN19_06740"
     CDS             4330..>4578
                     /locus_tag="VGN19_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HEV7195618.1"
                     /translation="MAFYRHQGSIPPKRHTQHRRPAGRGATGELYYEELMGEEGFSSD
                     SSLLYHRNIPSTITDARSWAVGELSTTPNHPLQPRHLRL"
BASE COUNT          715 a         1610 c         1562 g          691 t
ORIGIN      
        1 ctggccgtca cgcggcagca tgcggcccat gactgacgca ctcacccagg acgagctcaa
       61 ggcggacctc accctcgagc agctccagca gctggtcggg ctcgtggagt acgacgagga
      121 caaggacgtg ttcccggtga ccggctggga cgcgatcgtc ttcgtcgtcg gtaacgccag
      181 ccagaccgcg cactactacc agtccgcgtg gggcatggag ctggtcgcgt acagcggtcc
      241 cgagaatggt cagcgcgacc acaagtcgtt cgtcctcaag tccggctcga tccggttcgt
      301 cgtcaacggt gcggtcagcc ctgacagccc gctcatcgac caccatgccc ggcacggcgg
      361 cggcgttgtc gacatctcgc tcgaggttcc cgacgtggac cgttgcgtcg cccgggccaa
      421 agcctgtggg gcgcgggtcg tccgcgaggc cgaggacctc accgacgagc acggcacggt
      481 gcggatcgcc tcgatcgcca cctatggcga gacggtccac accctggtgg accggtcccg
      541 ctacgacggt ccctacctgc ccggctacca gcgggccaag tcctcgtacg tcaagcgcga
      601 gggcgccccg aagcgtctct ttcaggctct cgaccacatc gtcggcaacg tcgagctggg
      661 caagatggac gagtgggtgc agttctacaa caaggtcatg ggcttcgtga acatggccga
      721 gttcatcggc gacgacatcg ccacggacta ctcggccctg atgtccaagg tcgtcgccaa
      781 cagcaaccac cgcgtgaagt tcccgctcaa cgaaccggcc atcgcgaagc ggaagtccca
      841 gatcgatgag tacctcgagt tctacaacgg tcccggggcc cagcacctcg cgctcgccac
      901 cggagacatc ctgcgcaccg tcgacgagct gcgggccaac ggcatcgagt tcctcgacac
      961 tcccgactcc tactacgagg accctgagct cagggcgcgt atcggcgagg tgcgggtgtc
     1021 catcgaggag ctgcagagcc gcaagatcct cgttgaccgc gacgaggacg gctacctcct
     1081 gcagatcttc accaagccac tcggtgaccg tcccacggtg ttcttcgaga tcatcgagcg
     1141 gcacgggtcg ctgggcttcg gcaaggggaa cttcaaggcg ctgttcgagg ccatcgagcg
     1201 cgagcaggac gcccgcggca acctctgagg cgtggcagct cggcacggtc tgccatgaga
     1261 ggctgaccgc atggacatgc caacccgcgc cggatggttc gacgaccccg ccgaccccga
     1321 tcagctgcgc tacttcgacg gcgtgatctg gacgaaccac accacgcccc gagtcactcg
     1381 taccgcgccg gcaccccaac ccgcgcaggc ccagcaggga cccgccggct ggtctgcccc
     1441 tggcgcgcag ctgggccagg ccccgacccc cggcgggccg ggccagcagc cgcagtggac
     1501 gacgccgacc tacccgggga tgtaccgacg cccgacgacc cctgacggac agccgctcgc
     1561 gagctacggg cagcgggtcg gggccttcct gatcgactgg gtcatccagc tggccatctc
     1621 cgggatcctc ggcagctact tcctcgtcaa ggcgttctcc ggctatgtcg acgccttccg
     1681 cacggccatg aaccaggcgc agtcagggca gcagcccgat gtggcccacc tggtctccac
     1741 catcgacagc accgcgctca tgctctactc gatcgtcagc atcgtggtgt tcgccgtcta
     1801 ccagttcggg ttcctgaccc gttcgggtcg gacgccgggc aaggccgcag tgggcatcag
     1861 cgtgcggctt cgcgagcgcc ccggcccgcc cccggcggag gcggtgctcc ggcgggtggg
     1921 gctgcccgtg gcccttttcc tgttccagtt cgccccctac gtcggagccc tggcggtcct
     1981 cgcccgggcc ctggacctgc tctggccggc ctgggacaac caacgccagg cgctccacga
     2041 caaggtcgcg gcaactgtgg tcgtcgtggg ggagcagcct cgcggctgat cgccccggga
     2101 atcgtctgcg gctggtgggc cgcagcctca gcgcgccggc tgtaccgtcc cgctgacctc
     2161 gccgagaccg atccggctcc cgccgggccc gggcgcccag gcccgcaggg tgacctggtc
     2221 gccgtcttcg aggaaggacc ggctggtgcc gtcctcgagg ctgatgggtt cggttccgtt
     2281 ccacgacagc tcgagcaggc tgcctcggct cgtcttggcg gtgccggaga tcgtcccgga
     2341 gccgaacagg tcgccgttgc gcaggctggc gccgttcacg gtgagatggg ccagcatctg
     2401 ctccggcgcc cagtacacgt cgcggtactc ggggcgactg acgaccgtgc cgttgaggtc
     2461 gacttcgtag tgcacgtcca gtccgcgcgg ggccgcctgg ccacgcaggt agcccagcgg
     2521 ctcggggtcc tggccgggca cgtcgacccg cgcctcggcc agcgcctcca tcgtcaccac
     2581 ccagggtgag atcgacgtcg cgaacgactt gccgaggaag gggccgagcg ggacgtactc
     2641 ccacgcctgg atgtcacgag cactccagtc gttgagcagg accaccccga acaggtgctc
     2701 ctgcgcctcg tccacgctca cccggtcccc gagccgggtg ctctcgccca cgacgtaacc
     2761 gagctcagcc tcgatgtcga gccggatgct ggggccgaag gtgggggtcg cctcggtggg
     2821 tgccttgcgc tgaccagtgg gccgcaccac gtcggtgccg gagaccacga tcgtgccggc
     2881 ccgcccgtgg tacccgatcg ggagatgctt ccagttcggc gtcagcggtt cggagtccgg
     2941 ccggaagatc cttccgacgt tggtggcgtg gtgctcgctg gcatagaagt cgacgtagtc
     3001 ggccacctcc accggaaggt gcaggtggac gtcctcgagg cggtgcaaat ggggacggac
     3061 cgtgtcctgg tgcagctcgt tggtcagctg ctcgcgcagg aaggcgcgcg ccgccgacca
     3121 cgcctggcga ccttgctcga ggaacgcgtt gagactcggc gtcagccaga cctcgccgga
     3181 ctccatccca gcctgttcgg cgcaggcgcc cgcatcgagc acctggtcgc cgatccggac
     3241 ccccacccgc ggggagagcg agtccgtgga gaacaccccg tagggcaggt tgtcgatgcc
     3301 gaacgggtgg ccttcgggca ggtcgagcca gaactggttg gtcgtcatgt caggctcctt
     3361 ggatgagtgc gagagtggtg agctcgccga tcgggtcggt caccgcacag cagccgtatg
     3421 ccgtgaagaa cgcccgcacg atcgccgcgt ccgccgcgct catgcgggtc acctgcggca
     3481 ccagggctgc gggatcacgt tcggagagta ggggaaccag ctcgtccacg tcctcgccgt
     3541 tgagtgccca gcggactgcg gtcagcacgt tgagcagacc gtgctgctcc tcatcggcgt
     3601 acctgccgcg aaccgcgtgg tgcaacccac cggtgagctt gaagccgagg tcgtggtcga
     3661 tcgcggcccg gatgaaggtg gcaagctcgg tctcgtcggg ccaaggccac gtcggcgtcg
     3721 ccccggtgcg gaacttcgcc tgcaggacaa cggagtccgt ggcgccggcg gcgaggtcgg
     3781 ccagcgcctg cgcctgcgtg tcaccgcggg ggacctccag ggtcagcggg ggctcgagcc
     3841 ccgcatccct ccagcccggc gtccagccga gctccaccgc ggacacctgc acctccggcc
     3901 gggtccgcag cagggccagg gcgtcggtca cctgacccac gggggttccc ggacgggcga
     3961 ccacgaccac gcgcaagggc tcgtcgccga ccagctcaag gagctcggcg gccgccgcgg
     4021 cgggcacgag cagcgggccg acgatcgcgg catacccgct gtgtcggtgg aggcgatgca
     4081 ggcgcacggc cgccgcgagc ggggcgttcc ccggagggaa gacggcggcg tcgtcgacca
     4141 gcgcgctgaa cagagtgggc tcggcctggt ggtcggcgac ggcatccgac agcagagtca
     4201 tggtcggcag gctaccggcg catgcagacg ggcgcggcga gggtgcaggc cgtccgtggc
     4261 ccgtggcatg ctcgcctcac tccttcacga cggttgaggg cgcacccctc gatgacgaga
     4321 gagtgaacga tggcgttcta tcgacaccag ggcagcatcc cgcccaagcg gcatacccag
     4381 caccgacgtc ccgcggggcg gggggcgacg ggtgagctgt actacgagga gctcatgggg
     4441 gaggaggggt tctcttcgga ctcctcgctg ctgtaccacc gcaacatccc ctcgacgatc
     4501 accgatgccc ggtcgtgggc tgtcggtgag ctgtccacca cgccgaacca cccgctgcaa
     4561 ccgcgtcacc tgaggctg
//
LOCUS       DASYFY010000332         2848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1076087, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000332 DASYFY010000000
VERSION     DASYFY010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076087"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            726..1094
                     /locus_tag="VGN19_06745"
     CDS             726..1094
                     /locus_tag="VGN19_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195619.1"
                     /translation="MAWPSLMTTPLGPSGGSVTAAITEAAPSVTGRAPICSAPGHVAV
                     RPGHTALTRETLGIHQDTVVARQRLREYGLQAHLDGLNAFAFGRLHALKRARAERAEA
                     DFATTMWAAFRNKQLNRWTR"
     gene            1425..>2848
                     /locus_tag="VGN19_06750"
     CDS             1425..>2848
                     /locus_tag="VGN19_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018771059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HEV7195620.1"
                     /translation="MTHIVRGAYDPSTPWVVELSIPSSSSSPDPDAPPRAVQDQSSAD
                     DLVRRLTAAGFDARSQPVRQPAVADVPAGVIGYRVRTTSTFPSGADATAYVIRLKAAG
                     FAARSWYAGWDGASMAKGQWSINVLTIDPREFRGHLGATFGPDLVDRETTTALGAYAH
                     AKAAVNGGFFVLDPKAGAPGDPAGVGVYGGLLESETITGRPALVLDDRARHTRVARPV
                     WRGTLRTAASALHLDGLNRVPGMIRNCGGDAGDQPTDHAMHDTTCTDPNELVAFTTAY
                     GPSTPGGPGSEVVLDRNDRVVRIDPQRGTTLLQGQHSVQAIGNLTSRLSGLRPGQIAR
                     LDLRLTEAGGGNLVRPGTALVNGGPQLLRDGTEYITQNTDGMVHPTDPSVAYGWVLQR
                     NPRTFAGVDAAGRTVLVTVDGRQPDQLGLSIPEEAQVAGALGMRDAMNLDGGGSTAMS
                     IHGRLVTHPSDASGERPVGDAVVVR"
BASE COUNT          481 a         1033 c          922 g          412 t
ORIGIN      
        1 tttcaaatac atcgagggct tccgttccag ggccactcgc gtgcatgcgg ccgcaatcgc
       61 ggcgaagctc gaagcatcca gtgtgttcgc ggccgccagc gctgggatga agatcgtcag
      121 ctcggaccgg cgacgatccg aggtggcgtc attgactcgg cgcgcaaggt gtgacaccag
      181 cgggtgggtg caactcggac gatcaccgaa aggctctccc gccgtgaggg agaccaactc
      241 catgaggcac acgccgtcgt cggaggtcag gtgggcgccg acctgaagtg gcggccagtc
      301 ccgttgagat gccatcagtg cctcaccacg tgtgtcgtgt ggttcgtgcc gcgcacggcc
      361 ggggcgtgca gaagctccct ccacggtatc gccgcctaaa cggcacgaag gcgtgccgta
      421 tcaaggcccg taggactgtt cacctccgcg tggcatggtg ttcaccatga gccccgcgtc
      481 cggacgcgat gagtctgacc ctccagatgg tcctctcgac ccgccccacg gctaccagga
      541 gatcgtcggc gacggatgga cctgtaccac gtgtggggtc acgatcccca ggaaccccgt
      601 cttgaccaaa caccaccagg cctggcatcg cgagctcgag cgccgcctca tgacccgaga
      661 tctgggctga gtggggtggc gttccaccac ccgtcggtct ttctcgccga cggcgtcatc
      721 aagggatggc gtggccgtct ctgatgacga cgccgctggg tccgtcgggc ggcagtgtga
      781 cggcggcgat cactgaagcg gcgccgtcgg tgaccgggcg ggcgcccatc tgctcggctc
      841 ctggccacgt cgcagtcagg ccagggcata cggcattgac gagggagacc ctcggcatcc
      901 accaggacac cgtcgtcgcc cgccaacgac tccgcgaata cggcctgcag gctcatctgg
      961 acggcttgaa cgccttcgcc ttcggccgcc tccacgccct gaagcgggcc cgagccgaac
     1021 gcgccgaggc agacttcgcc accacgatgt gggcagcgtt tcgcaacaag cagctcaacc
     1081 gctggacccg ctaggcgcga aggtcgccac cccttcgcat gccgcgagcg ttcacggctc
     1141 gttcaccgtc atgcgccctc gatgcagtcc ggaccggcaa gagtggccgc atgccaccct
     1201 cgaaagccgg ttccccgtcc cgacccagga cgcggtccgt cgtcggcacg gccatgatcc
     1261 tcacattggg atgcacagct gccggatccg cagacgcggc gccgtcgatg cctttacgtc
     1321 aggcgtccaa cacgtcctcg aacaccaggt cgaccacact cccgctgggc cccgccggac
     1381 tgcccgagac gcgaacgacg acgaccgtcg agcccggcgt gacgatgacc catatcgtcc
     1441 gcggcgccta cgatcccagc acgccgtggg ttgtcgagct cagcattccc tccagcagca
     1501 gcagccccga cccggacgcg ccgccacgag cggtacagga ccagagcagc gccgacgacc
     1561 tggtccgtcg cctgacagct gcgggcttcg atgcccggag ccagccggtg cgccagcccg
     1621 cagtcgccga cgtcccggcc ggagtcatcg gctaccgggt ccggacaacg tccacgttcc
     1681 cgtccggggc cgacgccacg gcatacgtca tccgtctgaa ggccgcggga ttcgcggccc
     1741 gcagctggta tgcgggatgg gacggggcca gcatggccaa gggccagtgg agcatcaacg
     1801 tactgacgat cgacccgcgg gagttccgcg ggcacctcgg tgcgaccttc ggccccgacc
     1861 ttgtagaccg agagaccacc acggcgctcg gcgcgtacgc ccacgccaag gctgccgtca
     1921 acggcggctt cttcgtcctc gacccgaaag caggcgcgcc cggagacccc gccggggtcg
     1981 gtgtctacgg cggcttactg gagtccgaga cgatcaccgg ccgcccggcg ctcgtcctcg
     2041 acgaccgggc ccgtcacacc cgtgtcgccc gacctgtgtg gaggggcacc ctgcgcaccg
     2101 cggcctcggc cctccacctg gacggtctca accgagtgcc aggcatgatc cgcaactgtg
     2161 gtggcgacgc cggcgaccag cccaccgatc acgccatgca cgacacgacg tgcaccgacc
     2221 cgaacgagct cgtcgccttc accaccgctt acggcccctc cactccaggc ggacccggca
     2281 gcgaggtcgt actcgaccgc aacgaccgcg tggtccgtat cgacccgcaa cgaggcacga
     2341 cgctcctgca ggggcagcac tcagtccagg cgatcgggaa cctcacctca agactgtccg
     2401 ggctgcgccc tgggcagatt gcgcggctcg acctgcggct cacggaagcc ggtgggggca
     2461 acctggtccg gcccgggacg gctctggtca atggaggacc gcagctgctc cgcgacggca
     2521 cggaatacat cacccagaac acggacggga tggtccaccc gaccgacccc tcggtcgcct
     2581 acggctgggt actgcagcgc aacccacgca cgttcgcagg cgtggacgcg gccgggcgga
     2641 ccgtgctggt cacggtcgac ggccggcagc ctgaccagct cggcttgtcg atcccggaag
     2701 aagcgcaggt ggctggagca ctcggcatgc gcgatgcgat gaacctcgac ggtggtggct
     2761 ccacggccat gagcatccac ggtcgcctcg tgacgcaccc ctccgacgcc tcaggagagc
     2821 gacctgtggg cgatgccgtc gtcgtgcg
//
LOCUS       DASYFY010000333         4052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1180319, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000333 DASYFY010000000
VERSION     DASYFY010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1180319"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..729)
                     /locus_tag="VGN19_06755"
     CDS             complement(<1..729)
                     /locus_tag="VGN19_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome accessory factor PafA2 family
                     protein"
                     /protein_id="HEV7195621.1"
                     /translation="MSVRRVMGVETEYGISVPGDPTANPMILSGQVVNAYASAQGIRA
                     AHASWDYADEAPLRDARGFEMNRGMADASQLTDEEDPTLANVVLTNGARLYVDHAHPE
                     YSSPEVTSPRAAVAWDRAGEAIMAESVRRLSQLPPGVNLYKNNTDGKGASYGTHENYL
                     MRRETPFTDIVRHLVPFFVARQVMTGSGRVGIGQDSRTAGFQISQRSDFFEVEVGLET
                     TLKRPIINTRDEPHAVADLYRRLHV"
     gene            761..1771
                     /locus_tag="VGN19_06760"
     CDS             761..1771
                     /locus_tag="VGN19_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7195622.1"
                     /translation="MRHSPIAMYPRTALLAALLDYGPPGPIERQTLEQIQAHRGDVYR
                     DRAPISWVTGGGNRRVGVTFGTAPARDGYEIPLRIYRSRAVRDTDTDVPVVLFFHGGG
                     WVQGNVVMYDPLCMHLADRVRAVVVSVDYRLAPEYQAPTAAQDAIDATVWVAEHGEPL
                     RADCSRLAVCGDSAGGNLAAVVAQGVRESIPSTIRHQALIYPATDLTMSSPSIDELAG
                     APLLTKTNMLAFRAHYVPDGLDLMDPVLSPLFGSLVDLPPALVQTADLDPLRDDGIRY
                     ADALRAARVPVRLTNYLRVPHGFASFPGAVATGAQQRAELVHELRTHLYDGPGSCEPT
                     GD"
     gene            1850..2839
                     /locus_tag="VGN19_06765"
     CDS             1850..2839
                     /locus_tag="VGN19_06765"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0002189 - ribose phosphate
                     diphosphokinase complex [Evidence IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEV7195623.1"
                     /translation="MRDIVVFSGSAHRTLAMRICDALGVQLAPAEIKRFSNDCLQAQL
                     LANCRQRDVYIVQPLVPPTQEHLMELLLMIDAARGASAAQITAVIPHYAYARSDKKDA
                     SRISLGGRLVADMLVSAGVHRVLTMTLHAPQVHGFFSVPVDHLTAIGILADHFRDRDL
                     ADAVVVSPDLGNAKTATQFARLLGLPVAAGSKQRLADDRVIIDSIVGEVSGRHAIILD
                     DEIATGGSIVELLDRLADLGCTSADVACTHGLFAGKAVERLRDHPMIGEVVTTDTVPS
                     PARWPELRVRSVAQLFAEAIQRIHAGESVSSLFDGVDPTHAPPQGTLFDKVDG"
     gene            2836..3261
                     /locus_tag="VGN19_06770"
     CDS             2836..3261
                     /locus_tag="VGN19_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016464421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3054 domain-containing protein"
                     /protein_id="HEV7195624.1"
                     /translation="MRFPVLGSAVDVALVLVFAAVGRANHVKGVTVLGVIDTAWPFLV
                     GLVLGWATARLLWRDWPRGVVQAVPVWLLTVAVGLLLRVLSGGGGAPISFAVVATVVL
                     GIFLLGWRGLAGLRGLAPWRGSRQPVPQASGDQPGGANT"
     gene            complement(3222..>4052)
                     /locus_tag="VGN19_06775"
     CDS             complement(3222..>4052)
                     /locus_tag="VGN19_06775"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEV7195625.1"
                     /translation="AVPFFVLFIGLELLSLRVLDDGADSVDKADASVGYERRDSTASL
                     SMGLGSVVVNVFARAAALVGYTALYAVTPLRLDPDRWWTWLVGLLLVDLLWYSYHRSS
                     HRVRVLWAMHQAHHSSVHFNYTTALRQKWNPWGELLFWVPLPLLGMPPWMIFFAFSLN
                     LIYQFWVHTETIPKLWRPIELVFNTPSHHRVHHACDEEYLDRNYGGILIIWDRLFGTF
                     REEQTRPTYGLTHPVTTFNPFRLQYGELSRMIRDIRRAPRWRDRLGYVFAPPGWSPEA
                     "
BASE COUNT          606 a         1374 c         1405 g          667 t
ORIGIN      
        1 gacgtggagc cggcggtaga ggtctgccac ggcgtgcggc tcgtcgcggg tgttgatgat
       61 cggccgcttg agcgtcgtct ccagcccgac ctcgacctcg aagaagtcgc tgcgctgcga
      121 gatctggaaa ccggccgtgc gcgagtcctg cccgatgccg acacgtcccg agccggtcat
      181 cacctggcgg gccacgaaga acggcaccag gtgccggacg atgtcggtga agggcgtctc
      241 gcgacgcatc aggtagttct cgtgggtgcc gtacgacgcg cccttgccgt cggtgttgtt
      301 cttgtagagg ttgacaccgg gcgggagctg ggacagccgt cgcaccgact cggccatgat
      361 cgcctcgccc gcgcggtccc aggccaccgc ggcccggggt gaggtcacct cgggggatga
      421 gtactccggg tgggcgtggt cgacgtacag gcgggcgccg ttggtcagga cgacgttggc
      481 gagggttggg tcctcttcgt cggtgagctg gctggcgtcg gccattccgc ggttcatctc
      541 gaacccgcgt gcgtcccgca ggggcgcctc gtcggcgtag tcccacgacg catgtgcggc
      601 acggatcccc tgagccgagg cgtaggcgtt gacgacctgg cccgagagga tcatcgggtt
      661 ggcggtcggg tcaccgggaa ccgagatgcc gtactccgtc tcgacgccca tcaccctgcg
      721 aacactcatg cagccaccct aggtgagaga ctcggccctc atgcggcact cccccatcgc
      781 gatgtacccc cgcacggccc tgctggcggc actcctggac tacggccccc ctggaccgat
      841 cgaacgccag accctggagc agatccaggc ccatcgtggc gacgtgtacc gcgaccgtgc
      901 cccgatctcg tgggttaccg gtggagggaa ccgccgggtc ggggtgactt tcggtactgc
      961 gccggcccga gacgggtacg agattccgct gcgcatctac cgatcgcgcg ccgtgcggga
     1021 caccgacacg gacgttccgg tcgtgctctt cttccacggc ggtgggtggg tgcagggcaa
     1081 cgtcgtcatg tacgaccctc tgtgcatgca tctggctgat cgggtgcgcg ctgtcgtggt
     1141 cagcgtcgac taccggctgg caccggagta ccaggcgccc acggccgccc aggacgcgat
     1201 cgacgccacg gtctgggtcg cggagcacgg ggagcccctg cgcgccgact gctcccggct
     1261 ggccgtgtgc ggggacagtg ccggcggaaa cctcgccgcg gtagtggctc aaggggtacg
     1321 ggagagcatc ccgtccacga tccgacacca ggccctgatc tatccggcga ccgatctgac
     1381 catgtcgtcg ccctccatcg acgagctcgc cggcgcgccc ctgctcacca agacgaacat
     1441 gttggccttc cgggcgcatt acgtccccga tggcctcgac ctgatggacc cggtgctgtc
     1501 cccgctgttc ggcagcctgg tggatctgcc gccggccttg gtccagaccg ccgatctcga
     1561 cccgcttcgg gacgacggaa tccggtatgc cgacgcgctg cgtgccgctc gagtgcccgt
     1621 ccggctgacc aactacctga gggtgcccca cggtttcgcc tccttcccgg gcgcggtggc
     1681 caccggcgcc cagcagcggg ctgagctggt tcacgaactg cgcacccacc tgtatgacgg
     1741 ccccggctcc tgcgagccga ccggcgacta ggctcggtcc cagccccaag tccgactcac
     1801 cgtccggaaa ccggcaaccc ccagtttcgg ccgagccaga ggagccatcg tgcgggacat
     1861 cgtggtgttc tccggaagcg cgcatcgcac actcgccatg cggatctgtg acgccctcgg
     1921 ggtgcagctc gcgccagccg agatcaagcg cttcagcaac gactgcctgc aggcccagct
     1981 gctggcgaac tgtcgccagc gcgacgtgta catcgtgcag cccctggtcc caccgaccca
     2041 ggagcacctc atggagctgc tgctgatgat cgatgctgcg cggggggcct ccgcggcaca
     2101 gatcacggca gtgatcccgc actacgccta tgcccggtcg gacaagaagg acgcctcacg
     2161 gatctccctc ggcggcaggc tcgtcgcgga catgctcgtg tcggcgggcg tgcaccgcgt
     2221 gctgacgatg accctgcacg ccccacaggt gcacggcttc ttctccgtac ccgtcgacca
     2281 tctgaccgcg atcggcatcc tggccgacca cttccgggac cgcgacctgg ccgacgctgt
     2341 ggtggtctcc cccgacttgg ggaacgccaa gacggccacc cagttcgcca ggctgctcgg
     2401 actgccggtc gcggccggct ccaagcaacg actcgccgac gatcgcgtca tcatcgactc
     2461 gatcgtcggg gaggtgtccg gccgccacgc gatcatcctg gatgacgaga tcgccacagg
     2521 cggctcgatc gtcgagctcc tcgaccgact cgccgacttg gggtgcacca gcgccgatgt
     2581 ggcctgcact cacgggttgt tcgcgggcaa ggccgtggag cggctacgcg accacccgat
     2641 gatcggcgag gtggtcacca ccgacacggt cccctctccg gctcgttggc cggagctgcg
     2701 ggtacgttcg gtcgcacagc tgttcgccga ggccatccaa cgcatccacg ccggtgagtc
     2761 ggtgagcagc ctcttcgacg gggtggaccc cacgcacgct cccccgcagg gaacgctctt
     2821 cgacaaggtg gacgggtgag gtttcccgtc ctcgggtcag cagtggatgt cgcgctggtc
     2881 ctggtgttcg ccgcggtcgg acgcgccaac cacgtcaagg gcgtcacggt cctgggcgtc
     2941 atcgacacgg cgtggccctt cctcgtgggc ctggtcctgg gatgggccac agcccggctc
     3001 ctctggcggg actggccgcg cggggtcgtg caggcggtgc ccgtgtggct gctgaccgtg
     3061 gcggtcggtc tgctgcttcg cgtgctctcc ggcggtggag gagcgccgat ttccttcgcg
     3121 gtcgtcgcga ccgtggtcct ggggatcttc ctgttgggct ggcgcggact cgcggggctg
     3181 cgcggactgg cgccctggcg cgggtcgcgc caaccggttc ctcaggcctc cggggaccag
     3241 ccgggtggcg cgaacacgta gcccaggcgg tcgcgccagc gaggggccct acggatgtcg
     3301 cggatcatcc ggctcagctc gccgtactgc agccggaacg ggttgaacgt cgtcacgggg
     3361 tgggtcaggc cgtacgtcgg acgggtctgc tcctcgcgga acgtaccgaa caggcggtcc
     3421 cagatgatga ggatgccgcc gtagttgcgg tcgagatact cctcgtcaca cgcgtggtgt
     3481 acccggtggt gtgagggggt gttgaagacc agctcgatcg ggcgccagag cttggggatg
     3541 gtctcggtgt gcacccagaa ctggtagatc aggttgagcg agaaggcgaa gaagatcatc
     3601 cacggcggca tgccgagcag aggcagtggc acccagaaca gcagctctcc ccacgggttc
     3661 cacttctgtc gcagcgccgt cgtgtagttg aagtgcacgc tgctgtgatg ggcctggtgc
     3721 atcgcccaca gcactcggac ccggtggctc gaccggtggt aggagtacca gagcaggtcg
     3781 acgaggagca ggccgaccag ccacgtccac caccggtccg ggtcgaggcg cagcggggtc
     3841 acggcataca gggcggtgta gcccacgagc gcggcggcgc gggcgaagac gttgaccacg
     3901 actgagccca gccccatgga caggctggct gtggagtccc tgcgttcgta gccgacggag
     3961 gcgtcggctt tgtcgaccga gtcggctccg tcgtcgagca cccgcagcga gagcagttcg
     4021 aggccgatga agagcacgaa gaagggcacc gc
//
LOCUS       DASYFY010000334         6882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_338549, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000334 DASYFY010000000
VERSION     DASYFY010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6882
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338549"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VGN19_06780"
     CDS             <1..461
                     /locus_tag="VGN19_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195626.1"
                     /translation="TLYAAGSATLTPTSGTITWPSSAITVSAASPANFLLTSITSKTV
                     AVTLNCNPLTDPATARSCTATDPNAHGIHSWTATPNVLDTWANPATTSALLTITQSVF
                     DGTTTTTTTFSIASGSGVGPQLTASIANGGQVSIALSAPGIQTFTVTNAR"
     gene            complement(615..947)
                     /locus_tag="VGN19_06785"
     CDS             complement(615..947)
                     /locus_tag="VGN19_06785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195627.1"
                     /translation="MALPPPGASAHQVLSTYLQALQAGDCDTAHALAASTFVVGNGEL
                     CGDVDVKTFTVGGDAQVGDSEITFATQMVTDGSADGSIPAGNLTWFYSLKKQPSGSWR
                     LISGGSGP"
     gene            1331..3307
                     /locus_tag="VGN19_06790"
     CDS             1331..3307
                     /locus_tag="VGN19_06790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195628.1"
                     /translation="MQGSTFLGHRRRAVLASGASMVLIAAAGPLAMVSVAQATSIPAT
                     PGSGAITRTVTAGGTTVFRPGVPGADVYAPGTELRQSGPSALGRAVVRSTSTPYNRSA
                     ARDGAMAAAPAASTASSAITRIGPQLLQSFLGINHRDQRLANNGNQFSTEPPDQGLCV
                     GGGHVVEAVNDALRVYATSSAPQTGVEDLNTFFGYPPAVIRSTHTFGPVVTDPSCLFD
                     PTTHQFFLAALTLGADPATGAFTGQTQLDFAVTANPTGTWAVYHLDVTDDGTNGTPVH
                     AGCPCVGDYPHIGVDSNGFYISTNEYSFFGPEYDGSQIYAFSKRALAAHAHTAFVTQY
                     DTNGADSGKPGFTVWPAQAPVTSQYAFGEHGTEFFLSSNAAPEANGTGTSNTIVVWAL
                     THTDTLGTRSPSAVLSSRRVPVRAYSIPPASDQRSGPTPLKDCLNDTACATFLNGVPD
                     PFTPEVTQPLDSNDSRMQQVTLAGGMLYGALDTGTHVGGTTKAGIAYFVVKPSVTRGK
                     VNGVVKTQGGLALAGNNLTYPAIGITAAGKGVLSFTLVGKDYYPSAAFTGFDAQHGAG
                     AIVTAAAGIGPQDGFSGYKYYGGGGPGVARPRWGDYGATAVDGNTIWAAAEYIAQQCT
                     LTQYEGTTSSPFGSCDGTRTALANWATRISQIQP"
     gene            complement(3389..4213)
                     /locus_tag="VGN19_06795"
     CDS             complement(3389..4213)
                     /locus_tag="VGN19_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003801367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195629.1"
                     /translation="MLELMDVGFAYAGGDWVFRGVTIGVGPGTATAVLGPNGRGKTTL
                     ARCAAGLLKPTEGSVCGDGSVGFVPQSHGSAFAYPVREMVLMGRAARVGIFSVPGRQD
                     RAAANAAMERVGISHLAQRAFPTLSGGEQQLVLIARAVASGSPVLVLDEPAASLDLRN
                     QAQVLRLLRLLVGEGMALLLTTHHPDHALYVADSVVLLGGPEGVACGSASRLLTRERL
                     SALYGIEVDSVTYRQDGHERTALVTAYERALDVAALDVAAEEDPLTPAPTPSAPRR"
     gene            complement(4206..5252)
                     /locus_tag="VGN19_06800"
     CDS             complement(4206..5252)
                     /locus_tag="VGN19_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003801365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEV7195630.1"
                     /translation="MRPDRGSEALVRRPTVALACAAVALVATGLIALTLGRYPVPLAH
                     VARVLEAQLTGRTYAGAQTEQDVVMLVRLPRVALAALVGGGLSVSGVALQATFRNPLV
                     SPQIIGVSSGASFGGALALLLGLGSGYLVGGAFVFGLLALAVVFVVTSGRGGAPMLMV
                     VLGGVVTGSFFTALVSLVTYLADPFNTLPAIVFWLLGSVATATFAKVAVALGPVLLGT
                     AVLLLLRWRINVLSLGDEDAAAVGVRPGPIRWVVLCAVTLIVAGSVAVSGIISWVGLV
                     VPHVVRMWVGPDHRVLLPVSFLAGSAFLVAVDTLARTLTAGEIPLGVLTALVGAPAFF
                     VLLRRNRDRIWDRA"
     gene            complement(5242..6420)
                     /locus_tag="VGN19_06805"
     CDS             complement(5242..6420)
                     /locus_tag="VGN19_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018772294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7195631.1"
                     /translation="MSAAPGSGLTRRSLISGGGLLAGSALLAACDTKSALATKPPATA
                     STSTSTSTSTSTVTLTDQRGKTIRLSGPARRIVTIPFPAAAMLVAVDQSADHLIGMHS
                     ASWSAMRSGILGELFPTALSIRHDVADSNFIPNVESVLSLRPDLVVQWSDRGSELTAP
                     LESAGLTVLGLTYGTQQDVATWITAFGGALGKPQRAQALNAYAAQALAEMTSLGGSTT
                     GPTPTILYVNRFIGGLKVAGAASYNDFYIKLVGGHNPATGPHGVAGKGMVGVDPEQVL
                     AWDPDIILLGNFDAAMPSDLYQGQLWRGLSAVKNRRVYKVPLGGYRWDPPSHESPLMW
                     RWLRMLAFPQRAPFDLRGQVMTSYQQFYGRGPTGAQLDTILWTSANDASAHYQQFHAT
                     "
     gene            complement(6424..6807)
                     /locus_tag="VGN19_06810"
     CDS             complement(6424..6807)
                     /locus_tag="VGN19_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7195632.1"
                     /translation="MTTTSMGDLGASRHLVVSERIRERRRALGLTQKQVVTRLGRLGI
                     RSTNKALSSLEHGAGVDVVRLPELAVALDCSVTWLLGLTDDPGSWEPHPGATRHTPSA
                     PRTPSGSSGPPAPRPWILGPLTDEG"
BASE COUNT         1189 a         2443 c         2264 g          986 t
ORIGIN      
        1 tcaccctgta tgccgccgga agcgccacgc tcacgcccac ctccggaacc atcacctggc
       61 caagctcggc gatcacagtc agcgcggcct caccggcgaa cttcttgctg acctccatca
      121 ccagcaagac cgtcgctgtc accctgaact gcaacccctt gaccgacccg gccaccgccc
      181 gcagctgcac ggcaaccgac cccaatgcgc acggcatcca ctcgtggacc gcgaccccca
      241 acgtcctgga cacctgggcc aacccggcca ccacaagcgc cctgctgacg atcacccaaa
      301 gcgtgttcga cggaacaacc acgaccacga ccaccttctc gatcgcctca ggaagcggcg
      361 tcggccccca gctcaccgcc tccatcgcca acggtggcca ggtgtcgatc gcgctgtcgg
      421 cccccgggat tcagaccttc accgtcacca atgccagata gagaagcccc ggtcgccacc
      481 gttcgcaaga agacgcccgc gtcgctggcc cttcaagaga tccctgccac aggcccggga
      541 ctgcaaaccc gcgacgtaac gggtttgcgg gtaccgaatc tgctgagttg gggctgggaa
      601 ggctcgcagc ggcgtcaggg accgctgcct ccgctgatca agcgccacga gccgcttggc
      661 tgcttcttca ggctgtagaa ccaggtgagg ttccctgccg ggattgaacc gtcggcgctg
      721 ccgtccgtca ccatctgggt cgcgaaggtg atctcgctgt cgccgacttg ggcgtccccg
      781 ccgaccgtga acgtcttcac gtcgacatcg ccgcacagct caccgttgcc gaccacgaag
      841 gtgcttgcgg ccagtgcgtg tgccgtgtcg cagtctccgg cctgaagcgc ctgtaggtac
      901 gtgctgagaa cctgatgggc tgaagctccc ggaggcggca gagccacggg gggatgcgtc
      961 gcgcaagccg cgggtgcgct agctgccacc aaacccaaca gcgctttcgc tgttcgcgac
     1021 ccccggttca tctgcgcagt atgccgtgcc ggaagttctc gcatgcccgg attggaccgt
     1081 gctgtcgcac gcacgaggtc cgtggctgcc gtgtccctca cgtgcagccg tgcgcgacct
     1141 ccggccaacg ggtgacaaat ccagcgaact acgtcaaagg gccgagtgcc gcgcgaggtt
     1201 gtgcttcaac aatgcaaagc gagccatatc gagggtgcga aaggtaccgg tggctggggg
     1261 gttcgctggc gcgccagggc gtgccgagat ccaactgagg gattggtagc tactgtcaaa
     1321 ggagcgtcac atgcagggat ccacgttctt gggccaccgt cgtcgggcag tgctcgcctc
     1381 cggggccagc atggttctga tcgcggcagc cggcccactg gccatggtgt ctgtcgccca
     1441 ggccaccagc atcccggcga cacccggatc gggcgcgatc acccggacgg tgacggccgg
     1501 cgggacaacg gtcttccgcc ccggtgtccc cggggctgac gtctacgcac cagggacaga
     1561 gctacgtcag agcggtccca gtgcgctggg tcgtgccgtc gtgcggtcca cgtcaactcc
     1621 atacaaccgc agcgcagccc gcgacggcgc gatggctgcg gctccggctg cctcgaccgc
     1681 gagcagtgcc atcacacgca tcggaccgca gctgctgcaa agcttcttgg ggatcaacca
     1741 tcgcgaccaa cggctcgcca acaacggcaa ccagttctcg actgagccac cggaccaggg
     1801 actgtgcgtc ggcggcggac acgtggtgga ggcggtcaac gatgcactcc gcgtgtacgc
     1861 gacctcgagt gcgcctcaga ccggagtcga ggatctcaac accttcttcg gctacccgcc
     1921 cgccgtcatc cgctctaccc acacattcgg acccgtggtc accgacccga gctgtctgtt
     1981 cgacccgacg acccaccagt tcttcctcgc cgcgctgacc ctcggggccg accccgccac
     2041 cggcgcgttc accgggcaga cgcagctcga cttcgcggtg accgccaacc cgaccgggac
     2101 gtgggcggtg taccacctgg acgtgaccga cgacggcacc aatggcacgc ccgtccacgc
     2161 cggatgcccg tgcgtcgggg actacccgca catcggagtc gactcgaacg gcttctacat
     2221 cagcacgaac gagtactcgt tcttcgggcc ggagtacgac ggatcgcaga tctatgcgtt
     2281 ctccaagcgt gcgctcgccg cccatgccca cacggctttc gtcacccagt acgacaccaa
     2341 cggcgcagac agcggaaagc ccggcttcac cgtctggccc gcccaagcgc cggtgaccag
     2401 ccagtacgcc ttcggtgagc acggaaccga gttcttcctg tcctccaacg cggcccccga
     2461 ggccaacgga accggtacgt cgaacaccat cgtcgtctgg gctctgacgc acaccgacac
     2521 gctggggacg cggagtccga gcgcggtgct cagcagtcgc cgggtgccgg tgcgcgcgta
     2581 ctcgatcccg ccagcatcgg accagaggtc cggcccgacc ccgctgaagg actgtctcaa
     2641 cgacactgct tgtgcgacct tcctcaacgg cgtacctgac ccgttcacgc ccgaagtcac
     2701 gcagcccctg gacagcaacg acagccgcat gcagcaggtg accctggccg gcgggatgct
     2761 gtacggggcg ctggacacgg gtacccacgt gggcggaacc acgaaggctg gcatcgccta
     2821 cttcgtggtc aagcccagcg tgaccagggg gaaggtgaac ggggtcgtga agacacaggg
     2881 cggccttgcg ctggcgggca acaacctgac gtatcccgcg atcggcatca cggccgccgg
     2941 caagggcgtc ttgtccttca cgctggtcgg caaggactac taccccagtg cagccttcac
     3001 cggtttcgac gcgcagcacg gcgctggcgc gatcgtgacc gctgcggcgg gaatcgggcc
     3061 tcaggacggc ttctccgggt acaagtacta cggcggcggc ggcccagggg tcgcccgccc
     3121 acggtggggt gactacggcg ctaccgccgt cgacggcaac accatctggg ctgcggccga
     3181 gtacatcgcc cagcagtgca cgctgaccca gtacgagggc acgacctcgt cgccgttcgg
     3241 cagctgcgac ggcacgagga ccgctctggc gaactgggcc acgcggatca gccagatcca
     3301 gccctgaacg ggacccattc gaggctggtc cgccacccgg cgccaacagg gtggcggacc
     3361 agcctcgatc cgccgtgtcg gaacgccgtc aacgacgtgg agcgctcggc gtcggcgccg
     3421 gtgtgagcgg atcctcttct gccgcaacgt ctagggccgc aacgtccagg gccctctcgt
     3481 aggccgtgac gagggccgtt cgctcgtggc cgtcctgccg gtaggtgacg ctgtcgacct
     3541 cgatgccgta gagcgccgag agccgctccc gcgtgagcag tcggctggcg ctgccacatg
     3601 cgacgccctc agggccgccc agcagcacaa ccgagtccgc gacatacagg gcatggtccg
     3661 ggtggtgggt ggtcaggagc agcgccattc cctcgccgac caggaggcgc agcagtcgca
     3721 ggacctgggc ttggttgcgc aggtcaaggc ttgcggccgg ctcgtcgagc acgagcactg
     3781 ggctcccgga cgcgaccgcg cgagcgatga gcaccagttg ctgctcgccc ccgctcaggg
     3841 tcggaaaggc gcgctgcgca aggtggctga tgcccacgcg ctccatcgcc gcgttggccg
     3901 ccgcgcggtc ctggcgcccg ggtacggaga agattccgac ccgcgcggcg cgccccatca
     3961 gcaccatctc gcggaccggg taggcgaagg cgctgccatg gctctgggga acgaagccca
     4021 ccgacccgtc gccgcagacc gacccttcgg tcggcttgag cagaccggcg gcgcagcggg
     4081 cgagcgtcgt cttgccccgc ccgttgggcc ccagtaccgc tgtcgccgtc ccgggcccga
     4141 cgccgatggt gacgccgcgg aacacccagt cgccgccggc atacgcgaag cccacgtcca
     4201 tgagctcaag cacggtccca gatcctgtcg cgattgcgcc gcagcaacac gaagaaggcg
     4261 ggagcgccga cgagggccgt cagcaccccg agtgggatct cacccgcagt gagggtgcgg
     4321 gccaaggtgt ccaccgccac gaggaacgct gaccctgcca ggaacgagac cggcagcagc
     4381 acccggtggt cggggccgac ccacatgcgc acgacgtgcg ggacgaccag cccgacccag
     4441 ctgatgattc cgctgaccgc cacggagccg gcgacgatga gcgtgactgc gcacagcacc
     4501 acccagcgga tcgggccagg gcgcaccccc accgctgccg catcctcgtc tcccagggac
     4561 aacacgttga tccgccaccg caacaggagc aggactgcgg ttcctagcag gaccggcccg
     4621 agggcaaccg ccaccttggc gaaggtcgcc gtggccacgc tccccaacag ccagaacacg
     4681 atcgccggca gggtgttgaa cgggtcggcg agataggtca ccagcgagac cagggcggtg
     4741 aagaaggacc ccgtcaccac gccgccaaga accaccatca gcatcggtgc tccgcccctg
     4801 ccgctggtga cgacgaagac cactgccagc gccaacaggc cgaacacgaa ggcgccgccc
     4861 acgagatagc cgctacccag ccccaggagc agtgcgagcg ccccgccgaa cgacgcaccc
     4921 gaggagaccc cgatgatctg agggctcacc agcgggttcc ggaacgtcgc ctggagagcc
     4981 actccgctga cggacaggcc accgcccacg agggcggcca gggcgactcg tggcagccgg
     5041 accagcatca ccacgtcctg ctcggtctgg gcgcccgcgt aggtcctgcc ggtcagttgg
     5101 gcctcgagga cccgtgccac atgggcgagc ggcaccgggt agcgccccaa ggtcagcgca
     5161 atgagacccg tcgccaccag cgccaccgcg gcgcaggcga gggcgaccgt cggcctgcgc
     5221 acgagggcct cgctgccacg gtcaggtcgc atggaactgc tggtagtgcg ccgacgcatc
     5281 gtttgccgag gtccacagga tggtgtcgag ctgcgcgccg gtcggcccac ggccgtagaa
     5341 ctgctggtac gacgtcatga cctgacctcg caggtcgaac ggcgccctct gcgggaacgc
     5401 cagcatcctc agccaacgcc acatcagggg cgactcgtgg ctgggcgggt cccaccggta
     5461 accgcccagc ggcaccttgt agacccgccg gttcttcacc gccgacagtc cgcgccagag
     5521 ctggccctgg tagaggtcgg agggcatggc ggcgtcgaag ttcccgagca ggatgatgtc
     5581 ggggtcccac gccaacacct gttcggggtc gacgccgacc atgcccttgc cggccacccc
     5641 atgcggtccc gtggcggggt tatgaccgcc gacgagcttg atgtagaagt cgttgtagga
     5701 ggcggcacca gccaccttga gccccccgat gaaccggttg acatagagga tggtgggtgt
     5761 gggccctgtc gtgctgcccc ccagcgaggt catttccgca agggcctggg ctgcataggc
     5821 gttgagcgcc tgggcgcgct gcggcttgcc cagtgcgcca ccgaaagccg tgatccaggt
     5881 cgcgacgtcc tgctgggtgc cgtacgtcag ccccagaacg gtgagccctg cgctctcgag
     5941 gggagccgtg agctcggatc ccctgtctga ccactggacc accaggtccg gtctcagcga
     6001 gagcacgctc tcgacgttag ggatgaaatt gctgtcggcg acatcgtggc ggatcgacag
     6061 cgccgtcggg aagagctcgc cgaggatgcc cgaccgcatt gccgaccatg aggccgagtg
     6121 catgccgatg aggtggtctg cgctctggtc cacggcgacc aacatcgcgg cggcggggaa
     6181 ggggatcgtc acgatacgac gggctgggcc gctcagccgg atggtcttcc cgcgttggtc
     6241 cgtcagagtg acggtcgagg tcgaggtcga ggtcgaggtg gaggtcgagg cggtggcagg
     6301 cggcttggtc gccagggcgg acttcgtgtc acaggccgcc aggagcgccg atccggcgag
     6361 cagcccgccg ccggagatga gggagcgccg agtcagcccg gaacctggtg ccgcactcat
     6421 gcttcagccc tcgtcggtga gtggcccgag aatccacggg cggggagccg gtggaccgga
     6481 ggacccggac ggggtccgag gtgccgaagg cgtatgccgc gtcgcgccgg ggtgcggctc
     6541 ccaggaaccc ggatcgtccg tgaggcccag cagccaggtc accgagcagt ccagcgcgac
     6601 cgccagctcg ggaagccgaa ccacgtcgac ccccgcgccg tgctcgaggc tgctcagcgc
     6661 cttgttggta ctccggatgc ccagccgacc cagccgggtg accacctgct tctgggtgag
     6721 gccgagcgct cggcggcgct ctcgtatccg ctcgctcacg acgaggtgtc ggctggcacc
     6781 aaggtcgccc atgctggtcg tagtcattgg gcctccagga acgccacacc acctttcccc
     6841 tgatccgcgg ctccgtcaac ggccgaatga cggatttccc ga
//
LOCUS       DASYFY010000335         3800 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_444394, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000335 DASYFY010000000
VERSION     DASYFY010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3800
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444394"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VGN19_06815"
     CDS             complement(<1..287)
                     /locus_tag="VGN19_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rv2993c-like domain-containing protein"
                     /protein_id="HEV7195633.1"
                     /translation="MRIARYTTGDDPAYGIVQGDPGSEFIAQIQGDPLYQPLVLTGEQ
                     VLLADARLLAPVIPRSKVIGIGRNYADHAREMGGEAPAQPLMFLVPNTAVVG"
     gene            complement(385..1338)
                     /locus_tag="VGN19_06820"
     CDS             complement(385..1338)
                     /locus_tag="VGN19_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7195634.1"
                     /translation="MALSSIAAIATNPMAMFEMSVACEVFGLDRTDDGVPPFTFITCG
                     ERAGEPVATTSGGQFIPTHSWQDAVGVDLVVIPAGGIREHYPPELLETIRRAHRQGAT
                     ILSICTGAFVLAETGLLDGLSAVTHWRYAEQFAERFPRTEVSMDVLYIDHGSIMTGAG
                     TAAGIDACLHLVRRELGSGVATRIARRMVVPPQRDGGQRQYIEAPLPETDCESIQPVL
                     NHITDHLDAPHAVPELARLAMMSERTFARRFVAETGTTPHRWIVQQRVLRARELLEQT
                     DLPVESVASHSGFGSAALLRTHFQSVVGTSPQRYRREFSAR"
     gene            1421..1597
                     /locus_tag="VGN19_06825"
     CDS             1421..1597
                     /locus_tag="VGN19_06825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195635.1"
                     /translation="MTILLLIAIVGSVVFALEHHHRSTRGLPHPHGADSSIAFTDLDY
                     DWDRVVHDAQARHA"
     gene            1707..3098
                     /locus_tag="VGN19_06830"
     CDS             1707..3098
                     /locus_tag="VGN19_06830"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEV7195636.1"
                     /translation="MSLSFVLAGITAAGVAALAAPAVAGHAPPAKPRAMTTATGFSSG
                     QPQAQTVGKAGCGTNTAGEPSIHVSRSNLVGLGSEDGLGSGSEFWRATQVGGTTASSA
                     CGLTYSGQPNAVNNLGASGGDIDTAFAPSLSAAGTHRIYVASLNLGSVNVATSTDDGK
                     TFSQVPVQAGLPGDDREWIAAYGANTSLLTFHDVTTSNIEVLRSDTGGGPYTQISQAI
                     PATDYKASNNELGNLVIDHNIATPGGFWAYQSFVAPSKDPGPTGSAPYNEAFLAVSPD
                     GGHTWTDKPIPCSTAFGAKGLNHNFPNVSVAANGTLFYAVSNDTSVYVASSKDHGNTW
                     TCSGPVSSVSRAIFPWIVATSAGEDLAYYGVSSGSGATATWNVYFAQNHLQTVSGWNT
                     TKLMPVHTGDVCEGGISCTGGRQLLDDFGIDTDQSGWAHIAYSHDAPTLGGSTSYTGY
                     AVQTTGSPVGRPN"
     gene            3212..>3800
                     /locus_tag="VGN19_06835"
     CDS             3212..>3800
                     /locus_tag="VGN19_06835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyladenine DNA glycosylase"
                     /protein_id="HEV7195637.1"
                     /translation="MGVQVLSRAQWAQRAADHEARVDAATSAHRERRRSGRPHPVEDF
                     LFTYYPFRLAALRRWHPGAGVRLAGAAQEPRAQWRHYREVDGHVELDVAAYLQSRGET
                     LDFVRRLLSETVRRRAQLGCFGLHEWAMVDRQAADEVRHRDWPLRLGAAQTDTLVESL
                     QLSCSHYDAFRFYTPAARPLNLLQPTRESQVALEQP"
BASE COUNT          628 a         1346 c         1253 g          573 t
ORIGIN      
        1 ccgaccacgg cagtgttggg gaccaggaac atcagcggct gggcgggagc ctcgccgccc
       61 atctcccggg catggtcggc gtagttcctg ccgatcccga tcaccttgct gcgcgggatg
      121 accggcgcca gcaaccgcgc gtccgctagc aggacctgct cgccagtcag gaccagcggc
      181 tggtagagcg ggtccccttg gatctgggcg atgaactcac tcccgggatc gccctgcacg
      241 atgccgtatg ccgggtcgtc acctgtcgtg tatctcgcga tgcgcacggt aggagactaa
      301 ccaccccctg gctcggcaga atgcgcgccc aagacccatt ccgacgccgt cgggggcgtc
      361 gcctaggccc gcgcgccctc gcgctcagcg ggcggagaac tcgcgccggt agcgctgcgg
      421 cgaggtgccg acgacgctct ggaagtgagt gcgcagcagg gccgctgaac cgaagccgct
      481 gtgcgaggcg acggactcca ccgggaggtc ggtctgttcg agaagctccc tggcccgcag
      541 cactcgctgc tggacgatcc atcggtgtgg ggtcgtccca gtctccgcga cgaaccgcct
      601 ggcaaaggtg cgctcggaca tcatcgccag gcgcgcgagc tccgggacgg cgtgcggggc
      661 gtccaggtgg tcggtgatgt ggttgagcac gggctggatg ctctcgcagt ccgtctccgg
      721 cagcggcgcc tcgatgtact gccgctggcc gccgtcgcgt tgcggcggca cgaccatccg
      781 gcgagcaatg cgggtggcca ccccggaacc cagctcgcgc cggaccaggt ggaggcaggc
      841 gtcgattccg gcggccgtac cggccccggt catgatcgaa ccgtggtcga tgtagagcac
      901 gtccatggac acttcggtcc gggggaaccg ctccgcgaac tgctcggcat accgccagtg
      961 ggtgacggcg gacaggccgt ccagcaaccc cgtctcggcg agcacgaacg cacccgtgca
     1021 gatggacagg atggtggctc cctgccggtg cgccctgcgg atcgtctcga gcagctccgg
     1081 cggatagtgc tcacggatgc cgccagcagg aatgaccacg aggtcgacac cgacagcgtc
     1141 ctgccaggag tgcgtgggaa tgaactgtcc gccgctcgtc gtcgcgaccg gctcaccggc
     1201 tcgctcacca caggtgatga acgtgaacgg ggggacgccg tcgtcggtgc ggtccagacc
     1261 gaacacctcg caggcgaccg acatctcgaa catcgccatc gggttggtcg cgatggcggc
     1321 aatgctggag agagccattg gacgagtatg gcagaaatta tgctgagtgc gtcagttctg
     1381 ccactcgtgg ctgatctttg acgagcgcat gatttctgtc atgaccattc tgctgctgat
     1441 cgccatcgtc gggtctgtcg tgttcgccct cgaacaccat caccggagca cgcgcgggct
     1501 gccccacccc catggcgccg actcgtccat cgccttcacc gatctggact acgactggga
     1561 ccgcgtggtt cacgacgccc aggcacgcca cgcctgacga cggacaaacg ggacacctga
     1621 gcccgtaacg gacgcgcacg gggcctcgtt gaccacgacg agcgctaccc catcgcatcc
     1681 ttggaggatc tgtgttccgt cgggccgtgt cgttgtcatt cgttctcgca ggcatcaccg
     1741 cagccggggt ggcggcactg gccgcaccag cggtggcggg ccacgcccct cccgcgaaac
     1801 ccagagccat gacgaccgcc acaggattct cctctggtca gccccaggcc cagaccgtgg
     1861 gcaaggcagg ctgcggcacc aacaccgccg gggagccctc gatccatgtc tcacgatcca
     1921 acctcgtcgg actgggatcc gaggacggcc tcggcagcgg aagcgagttc tggcgcgcaa
     1981 cccaggtcgg tgggaccacc gccagctccg cgtgtgggct gacctacagc gggcagccca
     2041 acgccgtgaa caacctgggc gcctcgggcg gggacatcga cacggcgttc gcgccgagcc
     2101 tctccgcggc gggaacccac cggatctatg tcgcaagcct caacctcggt tcggtcaacg
     2161 tggccacctc caccgacgac ggcaagacct tcagccaggt tccggtccag gcggggctgc
     2221 cgggcgacga ccgcgagtgg atcgctgcct atggcgcgaa caccagcctg ctgaccttcc
     2281 acgacgtcac gacgagcaac atcgaggtgc tgcggtctga caccggcggc gggccgtaca
     2341 cccagatctc ccaagccatc ccggccactg actacaaggc gagcaacaac gagctcggca
     2401 acctcgtcat cgaccacaac atcgcgacgc cgggagggtt ctgggcctac cagtccttcg
     2461 tggccccgtc gaaggacccg ggtccgaccg gaagcgcgcc ctacaacgag gcgttcctcg
     2521 ccgtgtcccc tgacggcggc cacacctgga cggacaagcc catcccctgc tccaccgcct
     2581 tcggtgccaa gggactgaac cacaacttcc ccaacgtgtc ggtcgccgcc aacgggactc
     2641 tgttctacgc cgtcagcaac gacacctcgg tctatgtcgc ctcgtccaag gaccatggga
     2701 acacctggac gtgttccggc ccggtcagct cggtctcccg cgcgatcttc ccctggatcg
     2761 tggcgaccag cgcgggtgag gacctcgcct actacggagt gtcctcaggc agcggcgcca
     2821 ccgcgacctg gaacgtctac ttcgcccaga accacctgca gaccgtcagc ggctggaaca
     2881 ccacgaagct gatgccggtc cacaccggcg atgtctgcga gggcgggatc agctgcaccg
     2941 gcggccggca gctgctggac gacttcggga tcgacaccga ccagtcgggt tgggcccaca
     3001 tcgcctactc ccacgacgcg cccaccctcg ggggcagcac cagctacacc gggtatgccg
     3061 tgcagacgac cggctcgccg gttggacgac ccaactgagg agtcgacctg gcggcgactc
     3121 tgctggggct ccgactcggc tgggcactcc gactctgctg ggactccgcg tcggctggga
     3181 ctccagggtc cgcgcgggct agcctctgcg ggtgggtgtc caggtcctgt cccgcgcgca
     3241 gtgggcccag cgcgcagccg accacgaggc tcgggtcgac gcggcgacgt cggcccaccg
     3301 cgagcgacgc cggagcggac gaccgcaccc cgtcgaggac ttcctgttca cctactaccc
     3361 ctttcggctt gctgccctgc gccgctggca cccgggcgca ggggttcgcc tcgcgggggc
     3421 cgctcaggag cctcgcgcgc aatggcggca ctaccgcgag gtggatggcc acgtcgagct
     3481 cgacgtggcg gcatatctgc agtcgcgggg tgaaaccctc gacttcgtgc ggcgcctgct
     3541 gagcgagacg gtccggcggc gcgcgcagct cggctgcttc gggttgcacg agtgggcgat
     3601 ggtcgatcgc caggcagccg acgaggtcag gcaccgcgac tggccgctac ggctaggtgc
     3661 cgcacagacc gacacgttgg tcgagagcct gcagctcagc tgcagccact acgacgcatt
     3721 ccgcttctac accccagccg caaggccgct gaacctcctg cagccgacgc gggagagcca
     3781 ggtcgccctg gagcagccgg
//
LOCUS       DASYFY010000336         2117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1705477, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000336 DASYFY010000000
VERSION     DASYFY010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1705477"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VGN19_06840"
     CDS             <1..529
                     /locus_tag="VGN19_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEV7195638.1"
                     /translation="QSEVTVAEMVDSFLFLTMARTGDQLQGIKRGILEIADVIAVNKA
                     DGAGAPDARKAARELGGAIRMLRGHVEDGWDVPVLTCAGLTGEGLDEVWGKLVEHQDR
                     AKASGEFDERRRRQQVRWTWQLVRDSLEHQLRSHPGVRSAVPALEEAVLSGELTPALA
                     AQQILGTFLAGPGSS"
     gene            690..>2117
                     /locus_tag="VGN19_06845"
     CDS             690..>2117
                     /locus_tag="VGN19_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195639.1"
                     /translation="MLTVSSPESGVRTSALSGGVRFGPRHWIVRLLIAPLVVAVLLWP
                     VLIASGVDAAQAARIGGVLFVEVLGGALAWRLARGSCAPYLVEQIGMGLAIGSLLSVL
                     SQQLLRVTPLGAQAWWLPTAALVLGTVALSVRPSTRARLRMGEDAGFGLDEIGAVGGG
                     LAIGVLVIVSVWRGLPLGLSGLRAYEVDIPYHEALATSVTTWGAGDNILAVGSSVRYH
                     WFVHAFAGTLTNASDAGPFVVVTRVLPVLSLLAVVCLVWAWARRLSDHRSVPVLAVVL
                     TTVATNLATFFTIDYMHELVYSPSMAFGAVWLLAASFAFTEHLNRRLRVGLLMLGLLT
                     VGAVGGKSSNLVALWSGGGLAAVAAVWLPDIRRRVWSAFAVVLALGLATFVVVLYGSD
                     GNLTVHPGASAERLGMLPGQGTKAVLVGTLATLLVLGTKWTGLLTLLPERRTLRRPEL
                     WFGVGAAISGLLLAVALGHPGASQFY"
BASE COUNT          235 a          746 c          761 g          375 t
ORIGIN      
        1 gcagtcggag gtgacggtcg ccgagatggt cgactcgttc ctgttcctga ccatggcccg
       61 caccggcgac cagctgcagg gcatcaagcg cgggatcctc gagatcgccg acgtcatcgc
      121 cgtcaacaag gccgacgggg ccggtgcgcc cgacgcccgc aaggctgccc gcgagctcgg
      181 tggcgcgatc cggatgctgc gggggcacgt cgaggacggc tgggacgtgc cggtgctgac
      241 ctgcgccggg ctcaccggcg aggggctcga cgaggtgtgg ggaaagctcg tcgagcacca
      301 ggaccgcgcg aaggcctcgg gggagttcga cgagcgccgc cgccggcagc aggtgcgctg
      361 gacctggcag ctggtgcgcg actcgctgga gcaccagctg cggtcgcacc ccggggtgcg
      421 gtccgccgtc ccggcgctgg aggaggccgt gctctcgggc gagctgaccc cggcgctcgc
      481 cgcgcagcag atcctgggca ccttcctcgc cggccccggc tcttcctagc ctgccgggcg
      541 ttccgcgaag ccgggtccgc ggggcaatcc agttaccctg tggttgccgt ccggccaccc
      601 gtgaccgatc gccgaggccc ttctcgcggg cgggtgggtc gcatcattcg ctccagccag
      661 caaatctatc ccaggaggca ccgccgcccg tgttgaccgt gtcgtcaccc gagtccggcg
      721 tccggacctc cgctctttcc ggtggagtcc gcttcggccc aaggcactgg atcgtccgtc
      781 tcctgatcgc cccgctggtc gtggctgtgc tgctctggcc cgtgctgatc gccagcgggg
      841 tggacgcggc ccaggcggcg cgcatcggcg gagtcctctt cgtggaggtc ctgggcgggg
      901 cgctggcttg gcggctcgcc cgaggatcat gcgccccgta cctggtcgag cagatcggca
      961 tgggcctggc gatcggctcg ctgctcagtg ttctgtccca gcaactgctg cgcgtgaccc
     1021 cactcggcgc gcaggcgtgg tggctgccga cggccgcgct cgtcctcggc accgtcgctc
     1081 tctcggtccg cccgagcacc cgcgctcggc ttcgcatggg ggaggacgcg ggcttcggcc
     1141 tcgacgagat cggggcggtc ggcggcggtc tggccatcgg cgtgctcgtc atcgtctccg
     1201 tctggagagg tctgcccctg ggcctgtccg gcttgcgggc ttacgaggtc gacatcccct
     1261 accacgaggc actcgccacg tcggtcacga cgtggggtgc gggcgacaac atcctcgcgg
     1321 tcggctccag cgtccggtac cactggttcg tccatgcctt cgccggcacg ctgaccaacg
     1381 cgtccgacgc cgggccgttc gttgtcgtca cccgggtgct tcccgtgctt tccctcctcg
     1441 ccgtggtatg cctcgtatgg gcctgggcgc ggcgcctgtc cgaccatcgt tcggtacccg
     1501 tgctcgccgt cgtcctcacg accgtggcga cgaacctggc caccttcttc acgattgact
     1561 acatgcacga gctggtctac tcgccgtcca tggccttcgg ggcggtgtgg ctgctcgccg
     1621 cctcctttgc gttcaccgag cacctcaacc ggcggctccg ggtgggtttg ctgatgctgg
     1681 ggctgctcac ggtcggcgcg gtcggcggca agtccagcaa cctcgtcgcg ctgtggagtg
     1741 gtggcgggct ggctgctgtg gcagcggtct ggctccccga catccgccga cgggtgtgga
     1801 gcgccttcgc cgtggtcctg gcgctggggc tcgcgacctt cgtcgtggtt ctctacggca
     1861 gcgacggcaa tctgaccgtc caccccggtg cctcggcgga gaggctgggg atgctgcccg
     1921 gtcagggcac gaaggccgtg ctggtgggaa ccctggcgac cctcctggtc ctggggacga
     1981 aatggacggg tctgctgacg cttctgccgg agcggcgcac tctgcggcgg ccggagctgt
     2041 ggttcggcgt cggcgccgcg atcagcggac tgctcctcgc ggtggccctg ggccatcccg
     2101 gcgcgagcca gttctac
//
LOCUS       DASYFY010000337         2041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1758686, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000337 DASYFY010000000
VERSION     DASYFY010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1758686"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..517)
                     /locus_tag="VGN19_06850"
     CDS             complement(<1..517)
                     /locus_tag="VGN19_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEV7195640.1"
                     /translation="MKIQRLGQLASVALVGTIALTACGSNNNSGGSTGSSSSAGSASS
                     VTTAASDCPKAGGTLNAEGSSAQKNAIEEAISSFQSSCSGTTVNYNPTGSGAGIKQFI
                     AGQVDFPGSDSALKTVPVAGKVEADEAAKACGSPAWDLPMVTGPIAVSYNVKGVGKLV
                     LNPTVIANIFNG"
     gene            complement(758..1705)
                     /locus_tag="VGN19_06855"
     CDS             complement(758..1705)
                     /locus_tag="VGN19_06855"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEV7195641.1"
                     /translation="MSSPIPAAGTIPWRRRRGQLEVALVHRPKYDDWSWAKGKLDPDE
                     SWPVAAVRETDEETALEVTLGRPLPGAEYTVLDGAGQPATKEVRYWAAEASKPAGRLS
                     NEVDEVLWLDVVTASDRLDYARDRDQLRAIVRADKAGTLTTWPLVIVRHAAAVGRGSW
                     ASDDAIRPLTAAGAHRAQELAPVLAAYGVSRLVSSPSLRCTETLRPYAARIAAALRTK
                     NGLSEEGYADDPARADRHLARLVERGTPAAICTHGPVIPALLDGLVALVDPHEPDGDD
                     ARATLTEAAESKMGKGEALVAHFAGTGETARVVAVERHP"
     gene            complement(1702..>2041)
                     /locus_tag="VGN19_06860"
     CDS             complement(1702..>2041)
                     /locus_tag="VGN19_06860"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777531.1"
                     /note="catalyzes the reversible transfer of the terminal
                     phosphate of ATP to form a long chain polyphosphate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEV7195642.1"
                     /translation="VHSILGRFLEHSRLFLFGGGGEPEVYIGSADMMHRNLDRRVEAL
                     LRIVEPRHLADLQSLLARGMSGEYAHWRLGSDGRWTRAHLDAEGQPLADLQATLIEVH
                     GKRRRKARRR"
BASE COUNT          290 a          687 c          735 g          329 t
ORIGIN      
        1 tgccgttgaa gatgttggcg atgaccgtcg ggttgagcac gagcttgccg acgcccttga
       61 cgttgtagga caccgcgatc gggccggtga ccatcggaag gtcccaggcg ggcgagccgc
      121 aggccttggc agcctcgtcg gcctcgacct tgccggcaac cggcacggtc ttcagcgcgg
      181 agtcggaccc ggggaagtcg acctggccgg cgatgaactg cttgatgccc gcaccggagc
      241 cggtcgggtt gtagttgacg gtggtgcccg agcagctgct ctggaacgag gagatggcct
      301 cttcgatcgc gttcttctga gccgaggagc cctcagcgtt cagggttcca ccggccttgg
      361 ggcagtcaga cgccgcggtc gtgaccgacg acgcgcttcc ggcgctgctc gagctgccag
      421 tgctgccgcc gctgttgttg ttggaaccac aggcggtcag tgcgatggtg ccgaccaggg
      481 cgacgctggc cagctggcca agacgctgga tcttcacggt gttaaacctc tccgcagggg
      541 aaatcgaagg cgggcgttcg tgcccgacat tgcgaagtta ggcagtgttg atgacgcgtc
      601 ggccggtctc gggttaacgc acggtgaaca cccgtcagac attgcgcaaa cccgcatcaa
      661 cgcggtggcg agcggcgcgt gaacgcagtc ccatgcccgg gtcaagacgc ctggccagcg
      721 ggtcggcagc atggcctgcg agtccctcaa gcgggactca ggggtgacgc tcgaccgcga
      781 ccaccctcgc agtctcccct gtccccgcga agtgcgccac gagggcctca cccttgccca
      841 tcttcgattc cgctgcctcg gtcagggttg cgcgcgcgtc gtcgccgtcc ggttcgtggg
      901 ggtccaccag cgcgaccagc ccgtcgagca gcgcggggat cacgggcccg tgggtgcaga
      961 tggcggccgg ggtgccgcgc tcgacgagtc gggccaggtg acggtcggcg cgggccgggt
     1021 cgtcggcata cccctcctcg ctcaacccgt tcttcgtgcg gagcgcggcc gcgatgcggg
     1081 ccgcgtaggg acgcaaggtc tcggtgcatc gtaaggatgg tgagctcacc agccgactga
     1141 cgccgtatgc cgccagcaca ggggccagct cctgggcccg atgggcgccg gctgcggtga
     1201 gcggccggat ggcgtcgtcg ctcgcccagg agccgcggcc caccgcggcg gcgtgccgca
     1261 cgatgaccag cggccaggtg gtcagggtgc ccgccttgtc ggcccgcacg atcgcgcgca
     1321 gctggtcacg gtcgcgggcg tagtcgaggc ggtcggacgc ggtcacgacg tcgagccaga
     1381 gcacctcgtc cacctcgttg ctcaaccgtc cagccggctt gctcgcctcc gcggcccagt
     1441 accggacctc cttggtggcc ggctgccccg cgccgtcgag gaccgtgtac tcggcgccgg
     1501 gcagcggtcg tccgagggtc acctcgagcg cggtctcctc atcggtctca cggacggccg
     1561 cgacgggcca ggactcgtca gggtcgagct ttcctttggc ccaggaccag tcgtcgtact
     1621 tgggacggtg gacgagggcg acctccagct ggccgcgtcg gcgtcgccac ggaatggtgc
     1681 ccgcggccgg gataggtgag ctcaacgccg acgagccttg cggcggcgct tgccgtgaac
     1741 ctcgatcagc gtggcctgga gatcggccag gggttgtcct tccgcgtcga ggtgagccct
     1801 cgtccagcga ccgtcgctgc ccagccgcca gtgtgcgtac tcgccactca tgccgcgggc
     1861 cagcaacgac tgcaggtccg cgaggtgtcg tggctcgacg attctcagca gcgcctcgac
     1921 gcggcggtcg aggttgcggt gcatcatgtc ggcgctgccg atgtagacct ccggctcgcc
     1981 gccacccccg aagaggaaga ggcgggagtg ctcgaggaac cggcccagga tcgagtgcac
     2041 c
//
LOCUS       DASYFY010000338         3205 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_917419, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000338 DASYFY010000000
VERSION     DASYFY010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3205
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_917419"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(195..1016)
                     /locus_tag="VGN19_06865"
     CDS             complement(195..1016)
                     /locus_tag="VGN19_06865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195643.1"
                     /translation="MDTLDVLRICVKRWFVFLPILLLAYYASQSLSSDQRPVYSATGS
                     FAVIYHARTPLKAGQPDPRQLNPLAAGGGSLLKQALLTDLRSPGTQSRLASPGVIGTS
                     PSSTADGSLYSVTSTATSATVGIAAYGPDRTAVAGTVDRVLAASSAKARQMQDRAGAP
                     AAGRLDTFVTLPTQTTELAPASKLKLVLAILAVGVIAGAGLSLLLDRILAKWRPRRAK
                     TAVPRRARRKTAPEDAADEYEPDRDEPARPEPTVDEPFSEFARAGQASVGAEETG"
     gene            complement(1146..1970)
                     /locus_tag="VGN19_06870"
     CDS             complement(1146..1970)
                     /locus_tag="VGN19_06870"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7195644.1"
                     /translation="MELARSRPVTSAKAWLRGHFGLWPLLELRNRLIWGPNAAAWRLF
                     EWREVRRLSNALGPLPETGVTTIIPTYRRPELLPAAVASALGQTVTDHLVVVVDDGGG
                     GLPELPQDDRLIAISLSRNTRRLGLVRNVGIRLTRSTYIAFLDDDNQWQPNHLAVATD
                     ALDDGADLVYTAVERVRSDGSWMDTLSQDFDRRALGDRPGFVDANAIVVRRDAGVRFS
                     VIRRGKEMLPKEDLEFVWRMSARMRVRHVSVPTVRYLVNENSYYTGWAPDPRDGQT"
     gene            complement(2073..3038)
                     /locus_tag="VGN19_06875"
     CDS             complement(2073..3038)
                     /locus_tag="VGN19_06875"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7195645.1"
                     /translation="MGGNEVIPTDGAAGLELGVVCVTWNSASHLPHLLASLGPGLEGV
                     AWRLWVVDNASCDETVALVRQLAPEAVVVQTGSNTGYAAAINAGIRALPPHAAVLVLN
                     PDVRLDPGCGLELMRTLARGDAGIAVPVQRDSDGRRHPTLRRDPAVRRALAEALLGGR
                     RAGRLAWGELVTDADAYLADTPADWATGSVMAISRVCLDAVGEWDERFFLYSEETDFA
                     QRAAALGFALRLAPLAGCEHARGASHESAQLWALLTINRVRLFAKRHNGFHAFTFRLA
                     LLAGELVRSVRGSANHRAAVVALLGGDRHAAALVQELRRAAADAQ"
BASE COUNT          522 a         1105 c         1111 g          467 t
ORIGIN      
        1 accgactcga cggttctcac ccacacgccg cccacgctga cgaccagggc gaggagcacg
       61 acgaccaggg aggccgtgcc ccactgcgcg ggtgccgtcg caggcagctg gcccaacgcc
      121 aggaccacca gaaccagcgc ccccagaacc agcgccacct gcatcgatcg ccgtgtcatg
      181 ggagggcggc ctgtttagcc ggtctcctcg gcgccgacgg atgcctgccc ggcgcgggcg
      241 aactcgctga aaggctcgtc gacggtgggt tcgggtcggg ccggttcgtc cctgtcgggc
      301 tcgtattcgt cagcggcatc ctccggggcc gtctttcgac gcgcgcgccg tggaactgcg
      361 gtcttggccc ggcgggggcg ccacttggcg aggatccggt cgagcagcag cgacaggccc
      421 gcaccggcga tcacgcccac ggcgaggatt gctaggacga gcttgagctt ggaggcaggc
      481 gccagctcgg tcgtctgggt cggcaacgtc acgaaggtat ccagtcgtcc cgcagccggt
      541 gcgccggccc ggtcctgcat ctggcgggcc tttgccgacg acgcggccag gacgcggtcc
      601 acggtcccgg cgaccgcggt gcggtcgggc ccgtaggccg cgataccgac ggtcgccgag
      661 gtggcggtgc tggtcacgga gtacaaggac ccgtccgcag tactgctcgg gctggtgccg
      721 atgacgccgg ggctagcgag ccggctctgc gtgccaggcg atctcaggtc agtcagcagc
      781 gcttgcttca gcagtgagcc gccacctgcc gcaaggggat tcagctgtcg agggtctggc
      841 tgcccagcct tcagtggcgt tcgcgcgtgg tagatcacgg cgaagctgcc cgtggccgag
      901 tagaccgggc gctggtcgct gctcagactc tggctcgcgt aataggcgag cagcagaatc
      961 gggagaaaga cgaaccatcg cttcacgcag atccgcaaga cgtccaaggt gtccatacat
     1021 gctcccctca agcccggact ccgattggcg ctatcaggct acgcggcacc cgccaactag
     1081 catggagttt tggaaaaatc tcaaaattca accaagagat cctcaggtgt ctctcagcat
     1141 ttgccttagg tttgtccatc tcgggggtcg ggggcccagc cggtgtagta gctgttctcg
     1201 ttgacgaggt accgcaccgt cggcaccgag acgtgacgca cccgcatccg cgcgctcatc
     1261 cgccacacga actccaggtc ctccttcggc agcatctcct tgccgcgccg gatcacgctg
     1321 aaccgcaccc cggcgtcccg gcgcaccacg atggcgttgg catcgacgaa accggggcgg
     1381 tcgcccaggg cgcgacggtc gaagtcctgg gacagggtgt ccatccagga gccgtcactg
     1441 cggacccgct ccaccgccgt atagacgagg tcggcgccgt cgtcgagggc atcggtcgcg
     1501 acggcaaggt ggttcggctg ccactggttg tcgtcgtcca gaaaggcgat gtaggtggag
     1561 cgggtcagcc ggatgcccac gttgcgaacc agccccagcc ggcgagtatt gcgcgacaac
     1621 gagattgcga tcaaccggtc gtcctgtgga agctcgggca ggccgccgcc cccgtcgtcc
     1681 acgacgacga cgaggtggtc ggtcaccgtc tgacccaggg ccgacgcaac cgccgcgggc
     1741 agcagttcgg ggcggcggta ggtggggatg atcgtggtga cccccgtctc gggcagcggt
     1801 cccagtgcgt tcgaaaggcg cctgacctca cgccactcga agagcctcca cgccgcggcg
     1861 ttgggccccc agatcaaccg attgcgcagt tcgagcaggg gccacaaccc gaagtgaccg
     1921 cgcagccagg ccttggccga cgtcacggga cggctacgcg cgagttccac cgcaccgacc
     1981 tccacccaaa gctgtgcgaa ccggtccagt gtcccgcgca cgccaccgcg ctggggcggg
     2041 ttccgggatt ctgggtcgcc cgaccgccag gctcactgag catcggcggc cgcccggcga
     2101 agctcctgga ccagcgccgc ggcgtgccgg tcaccgccca acagtgcgac gacggccgcc
     2161 cggtggttgg ccgagccgcg caccgaacgg accagctcgc cggccagcag ggccagtcga
     2221 aacgtgaacg catgaaaacc gttgtgtcgc ttggcaaaga gtcgcacccg gttgatcgtc
     2281 agcagggccc acagttgggc gctctcgtgc gaggctcctc gagcgtgctc gcagccggcc
     2341 aggggtgcga gtcgcagggc gaagccgagg gcggcggctc gctgcgcgaa atcggtttcc
     2401 tcggagtaca ggaagaagcg ctcgtcccac tcgccgaccg cgtcgagaca gactcgcgag
     2461 atggccatca ccgagccggt ggcccagtcc gccggagtgt ccgcgaggta ggcgtcagcg
     2521 tccgtgacca actcccccca ggcgagcctg ccggctcgcc gcccgccgag cagcgcctcc
     2581 gccagggctc gccttaccgc ggggtcacgc cgcagcgtgg ggtgccggcg cccatcgctg
     2641 tcgcgctgga cggggacggc gatcccggcg tcgccgcggg ccagcgtccg catcagctcc
     2701 aacccgcacc ccgggtccag acggacgtca gggttgagga ccaggaccgc cgcatgcggc
     2761 ggcagggcac ggatcccggc attgatggcc gcggcatacc cggtgttcga cccggtctga
     2821 acgaccaccg cctcgggggc cagctggcgc acgagggcca cggtctcgtc gcaggacgcg
     2881 ttgtcgacga cccacaggcg ccaggccacc ccctcgagac cgggtccgag cgaggccagc
     2941 aggtgcggga ggtgggaggc ggagttccag gtcacgcaga cgaccccgag ctccaggccc
     3001 gccgcgccgt cggtcgggat gacctcgttt ccgcccaccc gcccattgtt gcctcacgtc
     3061 cgtgactaat cgactcatcg agtcatctct ggcggttcgt ccgaactcag gcagatgacg
     3121 gagccgggta cgccttcgtg aggggatgct gctggcacga gcggcaaggg ggtaagggtg
     3181 caggggcgaa gcatgggatc gagtc
//
LOCUS       DASYFY010000339         2783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_392270, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000339 DASYFY010000000
VERSION     DASYFY010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392270"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..853)
                     /locus_tag="VGN19_06880"
     CDS             complement(146..853)
                     /locus_tag="VGN19_06880"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEV7195646.1"
                     /translation="MLGAVAMLAVAILVWPSDPELPRQPGRVVSVRRGILRISGWEGQ
                     RVRTLAELADLLALMSAPIRIGVPPATAVRVAIESAPGAGPLRRVYDDLVRNVEAGES
                     LSDVWLLHADALGSGDLRLVGQAWRLTELTGAPLAGALIAAEEVLRGRERSRLSLAAA
                     VAGPRASMAVLALLPLCGPFVGVAFGIGPRELYFSSAAATASLAMGVATGLLAWVWSR
                     SIVHRALIPRPSRHRRR"
     gene            complement(853..1983)
                     /locus_tag="VGN19_06885"
     CDS             complement(853..1983)
                     /locus_tag="VGN19_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadA family conjugal transfer-associated ATPase"
                     /protein_id="HEV7195647.1"
                     /translation="MTHEVWVEERIRQGRPPDQALVAEVAAAQAATLGRGGVAAAAES
                     LASEVLGLGPLESCLSDSRVTDILVNGDGAVWLDRGSGLERSVVELADAATARRLAVR
                     LAGMAGRRLDEGQPWVDGLLPGGVRLHAVLPPLVEGGAHLSLRIPRVQAQGLAALRDA
                     GMFGAWGEDLLGALMAARRSFVVTGGTGCGKTTVLAGMLAEVPVGERIVVVEDVRELS
                     VGHPHVVRLQGRGANVEGQGRVTLVDLVRQALRMRPDRLVVGEVRGAEVREMLAALNT
                     GHEGGCGTVHANTPKDVPARFEALGALAGLGREALQSQLASAVQAVVHVARRGRVRVV
                     ESISVLVPLPEGVGCVCAAELQTQTKGEGWGRLAALLGEQPC"
     gene            complement(1994..2701)
                     /locus_tag="VGN19_06890"
     CDS             complement(1994..2701)
                     /locus_tag="VGN19_06890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195648.1"
                     /translation="MNHLVVGVLGTSGGLGVSSLAVALAVRASRIHGVTACVDAVPEG
                     GGLDVTACLEHLPGLRWSDLADAQGAFDGAALLRDLPAEGSVRVLASRAERPAVAVMA
                     AAVRALAEVCAVTVVDLGRSVEQVQWCTDVIVVSGLTARQLADASAVVPELVRRSPSA
                     RLVIRAGRHDPFQPEDVADHLDLPLAAVLADDPRALTDADRAKMPGERRASALTRAAD
                     RVLSTCTLPANLEPALP"
BASE COUNT          494 a         1067 c          889 g          333 t
ORIGIN      
        1 tcaaggcttc gaggtgcgcg acgaacgtat gcgtgagcga cggtcacagc ccgcgagccc
       61 agacgacctc ccccgtcgtc cgccgggacc tgacgactgg gccagagcgc caacgacagg
      121 gccgccagca gcccaaggac ccacgtcatc gtctgcggtg ccgcgacggc ctcggaatca
      181 gcgctcggtg gacgatactg cggctccaga cccaggcaag caggcccgta gcgacgccca
      241 tggccaggct tgcagtggcc gctgccgagg agaagtacag ctcgcgcgga ccgatcccga
      301 aggccacacc cacgaacgga ccacacagcg gcagcagcgc caagacggcc atggaggctc
      361 tggggccagc caccgctgcc gccagcgata gccgcgatcg ctcacgaccg cgcaggacct
      421 cctccgcggc gatgagcgca ccggccaacg gtgcaccggt cagctcggtc aatcgccacg
      481 cctggccgac cagtcgcagg tcaccgctgc cgagcgcgtc tgcgtggagc agccagacgt
      541 cggagagact ctcgcccgcc tcgacattgc gaaccaggtc gtcgtacacc ctgcgcaaag
      601 ggcccgcccc cggggcggac tcgatcgcca cccgtaccgc tgtggccggc ggaaccccga
      661 ttcggatcgg ggcagacatg agcgcgagaa ggtcggcgag ctcggccagc gtccggacgc
      721 gctggccctc ccatccggaa atccgcagga tgccgcgccg gaccgacacc acccgaccgg
      781 gctgtctcgg tagctcggga tccgatggcc acaccagaat cgccacggcc agcatcgcga
      841 ccgcgcccag cattaacacg gctgttcacc cagcagggct gcgagcctcc cccagccctc
      901 acccttggtc tgggtctgca gctccgcggc gcacacacaa cccactccct caggcagggg
      961 gacgaggacc gagatggact ccaccacgcg gacccggcca cgccgggcga catgcaccac
     1021 cgcctggacc gcgctggcaa gctgcgactg cagcgcctct cgccccagcc cggcaagcgc
     1081 tccgagtgcc tcgaacctag ccggtacatc cttgggagtg ttcgcatgca cggtgccgca
     1141 cccgccctcg tgaccggtgt tgagggccgc caacatttca cgtacttccg cccctcgcac
     1201 ctcacccacc accaagcggt caggccgcat cctcaaggcc tggcgaacga gatcgaccaa
     1261 cgtgactcgg ccttggccct cgacgttggc cccccgccct tgaagccgaa ccacatgtgg
     1321 gtggccgact gacagctcgc ggacatcctc gaccacgacg atgcgctcac cgaccggcac
     1381 ctcggccaac atcccggcca gcacggtggt cttgccgcag ccagtgcctc cggtcacgac
     1441 gaatgagcgc cgagcggcca tcagcgcccc cagcaggtcc tcaccccacg ccccgaacat
     1501 cccggcgtcg cggagggccg ccagcccctg cgcctgcact ctggggatgc gcaagctcag
     1561 gtgcgccccg ccctcgacca gtggcgggag taccgcatgt aatcgcaccc caccgggaag
     1621 caacccgtcg acccacggtt gaccctcgtc cagccgacgt ccagccatcc cggccagtcg
     1681 aacagccagc cgccgcgcgg tcgctgcgtc cgcgagctcg accaccgacc gctcgagtcc
     1741 gctaccgcga tcgagccaca ccgcgccgtc gccgttcacc aggatgtccg tgactcgcga
     1801 gtcggacagg cacgactcga ggggccccaa gccgagtact tcggacgcca acgactccgc
     1861 agcggcagcc accccaccac gacccagcgt cgctgcctgg gctgcggcaa cctcggcgac
     1921 cagcgcctgg tccggcggcc gtccctgtcg gatcctctcc tccacccaca cctcgtgggt
     1981 catgacgggg cgctcatggc agagccggct cgaggttggc gggaagtgtg caggtcgaga
     2041 ggacgcgatc agccgctcgg gtcagcgccg aggcgcgccg ctcgccaggc atcttggcgc
     2101 gatcggcgtc ggtgagggcg cgggggtcat cggccaggac cgcggcgagc ggcaggtcca
     2161 ggtgatccgc cacgtcttcg ggctgaaagg gatcgtgacg tcccgcgcga atcacgagtc
     2221 gggccgaagg tgaccgacgg accagctccg ggacaaccgc ggacgcgtcg gcgagctgcc
     2281 gagcggtgag gccgctgacg acgatgacgt cggtgcacca ctgcacctgc tcgaccgatc
     2341 ggcccaggtc cacgacggtg acagcacaca cctcggccag ggccctcacg gcggcagcca
     2401 tcaccgccac cgccggacgc tcagcacggg aagccaggac gcgaactgaa ccttcagcgg
     2461 gcaggtcccg cagcagggcg gcaccgtcaa aggcgccctg ggcgtcagcg aggtccgacc
     2521 accgcaaacc gggcagatgt tcgaggcagg cggtgacgtc caggccacct ccctcgggca
     2581 cggcatcgac gcaggccgtc accccatgga tccgcgaggc ccgcacggcc agtgccacag
     2641 caaggctcga gactccgagg ccgccagagg tgcccagcac gcccaccacg agatggttca
     2701 tgggacaacc cttgcgtcac cacgcgaagc gagctgcccg cggcacctgc ggttgtggat
     2761 gcggctggcg cgccgttcga ggt
//
LOCUS       DASYFY010000340         1934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_24303, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000340 DASYFY010000000
VERSION     DASYFY010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24303"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..725
                     /locus_tag="VGN19_06895"
     CDS             93..725
                     /locus_tag="VGN19_06895"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7195649.1"
                     /translation="MAAVLEDYQRPVAGGEIDTVRALLHDLRQPLAAILLLAGTDGGD
                     VTRKMQGIAGQARWLAELVESVLSEAATDEITTTDVTELATTAVTRALETADCEISVV
                     VDDAAEVWARPVALSRALACVLDNAVRAAGDGGHVIVGVRGDFEGVHLTVSDDGPGLG
                     RLAARTSLGLTTTRAMVAACNGSFELYAGADVGAVADICLARAELQSVAS"
     gene            722..1372
                     /locus_tag="VGN19_06900"
     CDS             722..1372
                     /locus_tag="VGN19_06900"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195650.1"
                     /translation="MRLVVCDDHLLLLEALGLALSASGHEVVALASHPDDAITAVAEH
                     HPDVCLLDVNFPGGTSVTAIQRIREISPETKVVMLSAEADHAVVGRAIAEGASGYVGK
                     EKPIVEIVEMLERAVRGQLAVEPSLLQRALRPHKTTDDPLWALQFLTDREWQVMRCIM
                     DGQTTEEMAESLGVQRSTARTHVQNLLTKLGVHSRLQAAALMSAHGSRESWPVHLR"
     gene            1459..>1934
                     /locus_tag="VGN19_06905"
     CDS             1459..>1934
                     /locus_tag="VGN19_06905"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195651.1"
                     /translation="MSSPTRVLIVDDHEVFADALTVCLGDYPDLFVVGTATTAAKGLR
                     LLELGPCDVMVLDLNLAGEDGLGVAREALRHHPRLGIVVATGTDSGEQILEAVQVGVR
                     GWVPKTSSALTLVDAIRGVARGETRIPADLLAGVLVSISRGQRATLENVQGLDDLTG"
BASE COUNT          283 a          647 c          694 g          310 t
ORIGIN      
        1 ctttttgacg tcctacgttt gagcggtcgc ggaacccacg ggtgccacac agggggtgct
       61 ggcaaccggc cgcgggttgt gagggataga acatggctgc tgttcttgag gactaccagc
      121 gacctgtcgc tggaggggaa atcgacactg tcagagcact gctgcacgac ttgcggcagc
      181 cactggcggc catcctgttg ttggccggca ctgacggcgg ggacgtgact cgcaagatgc
      241 agggcatcgc ggggcaggca cgctggctgg ccgagctggt ggagtcggtg ctcagcgaag
      301 ccgctaccga tgagatcacg acgaccgacg tcaccgagct cgcgacgaca gccgtcacgc
      361 gggccctgga gaccgcggac tgtgagatct cggtcgtggt ggacgacgcc gccgaggtgt
      421 gggcccgacc cgtggcgttg agccgcgcgc tggcctgcgt gctcgacaac gccgtccgtg
      481 ccgcgggtga cggaggccac gtgatcgtgg gggtccgtgg cgacttcgag ggtgtccacc
      541 tgacggtgtc cgacgacgga ccagggctgg ggcgcctcgc cgcgcggact tcgctgggac
      601 tgaccaccac ccgggccatg gtcgcggcat gcaacggctc gttcgagctg tatgccggag
      661 ccgacgtggg cgcggtcgcc gacatctgct tggcccgcgc cgagcttcag tcggtggcgt
      721 catgaggctc gtggtctgcg acgatcatct gctgctgctc gaggcgctgg gcctggcact
      781 gagcgcttcc ggtcatgagg tggtggccct cgcgagccac cccgacgacg cgatcacggc
      841 agtggccgag caccaccctg acgtgtgcct gctcgacgtg aacttccccg gtggcacctc
      901 ggtgacggcg atccagcgga tccgggagat ctccccggag accaaggtcg tgatgctgtc
      961 cgccgaagcc gaccatgccg tcgtcgggcg agccatcgcc gagggcgcct cgggctacgt
     1021 gggcaaggag aagcccatcg tcgagatcgt tgagatgctc gagcgtgccg tccgcggtca
     1081 gctcgccgtc gagccgtcgc ttctccagcg ggccctgcgc ccgcacaaga cgaccgatga
     1141 cccgctgtgg gcgctgcagt tcctcaccga ccgcgagtgg caggtgatgc gctgcatcat
     1201 ggacggccag acgaccgagg agatggccga gtcgctcggg gtgcagcgca gtaccgcccg
     1261 cacccacgtc cagaacctgc tcaccaagct cggcgtgcac tcgcgtctcc aggcggcggc
     1321 cctcatgtca gcccacggtt ctcgtgagtc ctggcccgtg cacctgcgct agcgggtcgt
     1381 gcgctcaacc ttttgacgga gtgggggctc ccacgccggt cgggtcccga acccggccgg
     1441 cgcagacacc ctagggccat gtcgtcgccg accagggtgc tcatcgtgga tgaccacgag
     1501 gtcttcgccg acgccctgac ggtctgcctg ggtgactatc cggacctctt cgtggtggga
     1561 accgccacca ccgcggccaa gggcctgcgg ctcctcgagc tgggaccctg cgacgtgatg
     1621 gtcctggacc tcaacctcgc cggcgaggac ggcctcggcg tggcccgtga ggcgctgcgc
     1681 caccacccgc ggttggggat cgtcgtcgcg acgggaaccg actcgggtga gcagatcctc
     1741 gaagcggtcc aggtgggcgt ccgtgggtgg gtgcccaaga cctcgagcgc gttgaccctc
     1801 gtcgacgcga tccgcggggt ggcccgcggc gagacccgta tcccggccga cctgctggcc
     1861 ggcgtcctgg tgtcgatctc gcgagggcag cgcgcgacgc tcgagaacgt ccaggggctc
     1921 gacgacctga ccgg
//
LOCUS       DASYFY010000341         1776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_917813, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000341 DASYFY010000000
VERSION     DASYFY010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_917813"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1324)
                     /locus_tag="VGN19_06910"
     CDS             complement(152..1324)
                     /locus_tag="VGN19_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005273622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HRDC domain-containing protein"
                     /protein_id="HEV7195652.1"
                     /translation="MPIDGVPPVVTSERALLEAARAIAAGEGSVALDAERASGYRYGQ
                     RAYLVQIRRDGAGTWLIDPIACPDLTPINEAIGGAEWILHAATQDLPCLAEIGLTPRQ
                     LFDTELAGRLLGLPRVGLAAVVEHYLQLTLAKEHSAVDWSTRPLPEPWLRYAALDVEV
                     LIDLRNLMGVDLARQDKGDWARQEFDALLSFTGPPVRVDPWRRTSGMHRVRHRRTAAA
                     VRELWQVRDLIAQERDVSPGRVLPDGVLVEIGTLAPTTAADLPETHRSVRRYQRQWLD
                     AVRKAQSLPENELPPMTLRSDGPPPQRAWAERDALAAARLSSTREALSAFAEEHTIPV
                     ENVLSPDPLRRVIWTPPQDRSAESFAKALAQLGARPWQTDIVAPMIAAAFEAHPDE"
     gene            complement(1459..>1776)
                     /locus_tag="VGN19_06915"
     CDS             complement(1459..>1776)
                     /locus_tag="VGN19_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3000 family protein"
                     /protein_id="HEV7195653.1"
                     /translation="RAELEPELANDPMLGAVGWSWLTDALESHHLGYTAEAGTVTRVV
                     SESFAGLADRPASVEMEVRASWTPVAGNVGAHLVAWSDLLCTIAGLPPLPEGVIALPG
                     PRR"
BASE COUNT          268 a          602 c          654 g          252 t
ORIGIN      
        1 acgacctcac gcagagtgcg gggcacggag ggcctccctt gacgaggtgc aggaaccaca
       61 ccggtatgcc ggtgcgtact cgtccgatgc tacttcccgg taacaagagg gtcaccggga
      121 agcgcgcgtg agagccgtca ccctggcccg ctcactcgtc gggatgcgcc tcgaaggccg
      181 cggcgatcat cggcgcgacg atgtcggtct gccacggccg ggcacccagc tgggccagcg
      241 ccttggcgaa gctttcggcg ctgcggtcct gtggcggggt ccagatgacc cggcgcagcg
      301 ggtcggggga gagcacgttc tccacgggga tggtgtgctc ttcggcaaaa gcactgagag
      361 cttcgcgggt actgctgagc cgagctgccg ccagggcatc gcgctcggcc caggcgcgtt
      421 gcggcggcgg gccgtccgag cgcagcgtca tcggcggcag ctcgttctcg ggcagggact
      481 gcgcctttcg gacagcgtcc agccactggc gctggtatcg gcgcaccgac cgatgggtct
      541 ccggcaggtc ggcggcggtc gtcggtgcca gggtgccgat ctccacgagc accccgtccg
      601 gcaggacccg cccaggggag acgtcgcgtt cttgggcgat gaggtctcgg acctgccaca
      661 gctcgcgcac ggcggccgcg gtcctgcggt gccgcacccg gtgcatgccg ctggttcgcc
      721 gccaggggtc gaccctgacg ggcgggccag tgaacgagag cagcgcgtcg aactcctgac
      781 gggcccagtc gcccttgtcc tgacgagcga ggtcgacacc catcaggttg cgcaggtcga
      841 tcagcacctc gacatcgaga gcggcatagc gcagccacgg ttccggcagc gggcgggtcg
      901 accagtcgac agcggaatgc tccttggcca gggtcagctg gaggtagtgc tcgaccaccg
      961 cggcaagacc gacccggggc aggcccagca accgtccggc gagctcggtg tcgaagagct
     1021 gacgtggggt gagtccgatc tcggcgaggc acggcaggtc ctgcgtggcg gcatgcagga
     1081 tccactcggc cccgccgatc gcctcgttga tcggggtcag gtccgggcag gcgatggggt
     1141 cgatgagcca ggtgccggcc ccgtcccgcc gaatctgcac gaggtaggcg cgttggccgt
     1201 agcggtagcc gctggcgcgt tcggcgtcca gggccactga gccttcccca gcggcgatgg
     1261 cacgggccgc ctccagcaag gcgcgttcgg aggtgacgac tggtgggacg ccgtcgatgg
     1321 gcatgtcgag cggcgtcagg gagacctcgg gctcgacgga cgactcgagg gcggcgtcag
     1381 gaggcgtcgg cgcaccgtcg ccagtcgccg cgcccgtgtc gatctcggtc atccggccaa
     1441 cctatctggc cgaccccgct agcggcgcgg accgggtagg gcaatgaccc cttccggcag
     1501 cggagggagc ccggcgatgg tgcacagcag gtccgaccag gcgaccagat gagcgcccac
     1561 gttgcctgcc accggagtcc acgaggcgcg aacctccatc tcgacactgg ccggccggtc
     1621 cgccagcccg gcgaagctct cagacaccac gcgggtgacc gtcccagcct ccgcggtgta
     1681 acccaggtgg tgagactcca gagcgtcggt cagccaggac cagcccactg cgccgagcat
     1741 ggggtcgttc gcgagctcgg gctcaagctc ggctcg
//
LOCUS       DASYFY010000342         6968 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_129910, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000342 DASYFY010000000
VERSION     DASYFY010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6968
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129910"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..621)
                     /gene="nadD"
                     /locus_tag="VGN19_06920"
     CDS             complement(16..621)
                     /gene="nadD"
                     /locus_tag="VGN19_06920"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEV7195654.1"
                     /translation="MRLGVMGGTFDPIHHGHLVAASEVQARFGLDEVVFVPTGLPWQK
                     DALAVSQAEHRYLMTVIATASNPRFTVSRVDIDRPGPTYTIDTLRDLRAERPGAELFF
                     ITGADALAQILSWKDADELFRLAHFIGVTRPGYPLSESGLPADRVTLEEVPAMAISST
                     DCRARVERSEPVWYLVPDGVVQYINKYRLYAEGQPAAAAAE"
     gene            complement(624..872)
                     /locus_tag="VGN19_06925"
     CDS             complement(624..872)
                     /locus_tag="VGN19_06925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195655.1"
                     /translation="MPSSYSHLFAASEEPLRALPMPPLAFGALAFLGFMAMLGVLWFF
                     RGTAQKIALGVGHGHDAHGTGAAGHDNHDPRGQQGSHH"
     gene            1656..2693
                     /locus_tag="VGN19_06930"
     CDS             1656..2693
                     /locus_tag="VGN19_06930"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7195656.1"
                     /translation="MTPELSIVIPVYNEEDVLPLLAQRLRPVADQLGTAYEVLTVDDG
                     STDQSPVVLQRLHREWPQLRIVRLRANAGHQAAISAGLASARGSFVVTLDADLQDPPE
                     IIPEMLAAARAGADVVYGVRTDRSTDSAFKRLSARGFYGLIRAMSGTHAQVNAGDFRL
                     MSRATVDAINGLPQHHQVLRFVVPALGFPSASVSYRRDERAAGRSKYPLSKMIRLSLD
                     SVTGFSTAPLRAATWLGLAGGLAALATIVYAMIAMATGDTLPGWTSTVVAVAGVGAVQ
                     LLCLGILGEYVGRMYAHLQARPTYFVAYDSIQDGTANTRTSPTRDSDADSDAGAVKRV
                     DAPVPAESPRA"
     gene            complement(2647..3342)
                     /locus_tag="VGN19_06935"
     CDS             complement(2647..3342)
                     /locus_tag="VGN19_06935"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195657.1"
                     /translation="MEGTEVRKLAALEDVHWWYRERRHLLARAIADLKPGRAMDIGAA
                     GGGNTRVLQGAGWSVAALEYGADGAAVAAERGLPVLRGDATALPVADASLDLVVAFDV
                     LEHILDDDAAVAEVLRTLRPDGRFLIAVPADPRLWSDHDVAVDHVRRYTRTTLNDVLE
                     RGGFEVTSLSSWNVLLRPIVAMRRRKASGSDLEHVPPLVNAGLRAVVTLERYLPVKAM
                     PGVTLLAQARPRA"
     gene            complement(3429..4733)
                     /locus_tag="VGN19_06940"
     CDS             complement(3429..4733)
                     /locus_tag="VGN19_06940"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEV7195658.1"
                     /translation="MGEVVGQDSQTIDPAVVEQVAVAARAARVASRRLALLHRAEKDA
                     ALEAMADALVAATDEIVLANETDLARGRGSGMAQGLLDRLALDRTRVAAVAQALREVA
                     GLPDPVGEVVRGSTLANGLQIRQVRVPMGVVGMVYEARPNVTVDAAGLGLKSGNAVIL
                     RGGSAAESTNRALVEVLRSALAERGLPADAVTLLEGGRDAVRALLTARGLVDLIIPRG
                     GAGLIQTVVLESTVPVIETGVGNCHVYVDAAADLGKALAIVVNAKTHRPSVCNAAESL
                     LVHERVAGDFLPKVLAELSGAGVVLHTDEVSGAAADLAGVPHVAATDVDYATEYLALE
                     LSVRVVADLDAALDHIERFGSGHTEAIVTEDRAAARRFTNEVDAAAVMVNASTRFTDG
                     GEFGFGAEIGISTQKLHARGPMALPELTTTKWIVEGDGQIRA"
     gene            4798..5655
                     /gene="pdxY"
                     /locus_tag="VGN19_06945"
     CDS             4798..5655
                     /gene="pdxY"
                     /locus_tag="VGN19_06945"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020077461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008478 - pyridoxal kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009443 - pyridoxal 5'-phosphate salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HEV7195659.1"
                     /translation="MSILSIQSSVAYGHVGNSAAVFPLQRLGIEVWPIVTVHFSNHTG
                     YGAWRGPLLAAADLREVLTGIEERGVLGRCDAVLSGYQGAEEVGEVVLDAVARVKAAN
                     PRAVYCCDPVMGDTGRGFFVRPGIPEFMRDHVIPRADIATPNHFELDFLTGRAERSTT
                     MAAVLDAVDDLRAMGPSTVLVTSLVHDGMSPDTLELLAADDAGAWLVSTPLLPISVNG
                     AGDLTSALFLAHLLETRSAATALARTASSVWGVLEETARSGEREIQIVAAQECIAHPD
                     ERFEVLALR"
     gene            complement(5687..6811)
                     /gene="proB"
                     /locus_tag="VGN19_06950"
     CDS             complement(5687..6811)
                     /gene="proB"
                     /locus_tag="VGN19_06950"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEV7195660.1"
                     /translation="MSAADRRQDVARAKRLVVKVGSSSLTGADSGAIDEERLVAIVDA
                     LAARRLSGQQVVLVSSGAIAAGIGPLGLARRPLDLATQQAAASVGQGALVAAYQRAFG
                     VHGLTVGQVLLTADDMTRRSHYTNARRTLDRLLELGIVPIVNENDTVATHEIRFGDND
                     RLASLVAHLVHADGLLLLTDVDALYDGPPSREGSSRVPLVVGGAGLDDITIGGTGSSV
                     GSGGMVTKVEAASIANSAGITTVLTSAERIQQALEGADVGTVFVPNGSRRTSRKLWLA
                     HATTPRGRLVLDEGAVRAVTERRTSLLPAGISAVEGTFTEGDPVDLCTTDGRVIARGL
                     VNYTSAELPGMLGRSTHELAKSLGPEYEREVVHRDDLVVL"
BASE COUNT         1072 a         2449 c         2392 g         1055 t
ORIGIN      
        1 gcgggcactg atctcctatt cggccgcggc agcggcaggc tggccctcgg catacaagcg
       61 gtatttgttg atgtactgca ccacgccatc ggggacgagg taccagacgg gctcggagcg
      121 ctcgacgcgc gcccgacagt ctgtggagct gatcgccatg gcgggcacct cttccaaggt
      181 gacccgatcg gccggcagtc cggactcgga caatgggtac ccgggccgcg ttacgccgat
      241 gaagtgcgcc aggcgaaaga gctcgtcagc gtccttccac gacaggatct gggccagggc
      301 gtcggccccg gtgatgaaga agagctccgc gccagggcgc tcggcgcgca ggtcgcgcaa
      361 ggtgtcgatc gtgtacgtgg gccccggtcg gtcgatatcg acgcggctca cggtgaaacg
      421 ggggttcgac gcggtggcga tcaccgtcat cagataccga tgctcggcct gactgacggc
      481 gagcgcgtcc ttctgccacg gcagccccgt gggaacgaag acgacctcgt cgagcccgaa
      541 acgggcctgc acctcggagg cggccaccag gtgaccgtgg tggatcgggt cgaacgtccc
      601 gcccatcacc ccgagccgca tggtcagtgg tgactgccct gctggccgcg ggggtcatgg
      661 ttgtcgtggc cggccgcgcc ggtgccgtgc gcatcatggc cgtgcccgac ccccagagcg
      721 atcttctggg cggtcccgcg gaagaaccac agcaccccga gcatcgccat gaaccccagg
      781 aacgcgagcg cgccaaacgc caagggcggc atgggcagag cgcgaagggg ctcctcggag
      841 gcggcgaaca ggtgggagta ggacgacggc atgggcacag cgtacccgca ggtgcgacct
      901 ggcccggcga gcacactggg ttgatcgtct atccaccgat gttgtgcaca gggatgtgca
      961 caacatcgca actgagcgcg cggcgatgtg gacaagcatg tgaagaaccg gtggacgaaa
     1021 attggtttgc gaaaccgctt gcggcccccg tcggcagcgg actagaaatc tctcacgcgc
     1081 tccggccgag aggtcgagac ggggaaaccc gagtcggtct tgcggatcgg agcacaggtc
     1141 agccggataa cggtggaccg cctccacggg gcaactcgag ggggtcccag gccctcgggc
     1201 catgggtccg cgggcgacgc cgcggaggta ctccgggccc gctgactaga tcgcatcgtc
     1261 acggtgcacc ggttccgacc ggggcacgtc agggcgctac cgtcgcagtg ggaagccgcg
     1321 ctcggctcgc cgagcacgga gcgatcgaga cggcgcagcg ttggctgtcg gcttgccggc
     1381 cgtccagagc tgcaccacca ccgtgcgcga cctgggactt cggtaccggc gcccgcgccc
     1441 ggggggacgg acgtggcccg ctggttcgcc agctgaccgc ggaggttccc acaccgaggg
     1501 ctcctcgaac tcatacttcg aggggccctc acctatctgt cggcctatct gtcggcctgt
     1561 ctgtcggccc tgtctgttgg ccctttctgt tggcgctgac tcgccacgag caagcggtca
     1621 gcgtcacctc tgacgctggt cgtaggcttg ccggtatgac ccccgagctc agcatcgtca
     1681 ttcccgtgta caacgaggag gacgtccttc cactccttgc gcagcggttg cgcccggtcg
     1741 ctgaccagct cggtacggca tacgaggtac tcaccgtcga cgacggcagc acagaccaga
     1801 gccccgtcgt gctgcaacgc ctgcaccgcg agtggcctca gctgcgcatc gtgcgactca
     1861 gggccaacgc aggtcaccag gcggcgatct ccgcaggcct ggccagtgcg cgaggctcct
     1921 tcgtggtgac cctggacgct gacttgcagg acccccccga aatcatcccc gagatgctcg
     1981 cggcagcacg tgcaggagcc gacgtcgtct acggcgtccg caccgaccgg tcgaccgact
     2041 cggcgttcaa gcggctcagt gcgcggggct tctacggact catccgggcg atgtcgggca
     2101 cgcacgcgca ggtgaatgcc ggcgacttcc ggctcatgtc acgggcgacc gtcgatgcca
     2161 tcaacgggct gccccagcac catcaggtcc tccggttcgt cgtacccgcc ctgggctttc
     2221 catcggcgtc ggtgtcgtac cgacgggacg agcgggcagc cggtcggtcc aagtacccgc
     2281 tgtcgaagat gatccggctt tccctggaca gtgtcaccgg cttctccacc gcccctttgc
     2341 gcgccgccac ctggctcggg ctcgcgggcg gcctggcagc cctggccacg atcgtctacg
     2401 cgatgatcgc catggccacc ggagacaccc tgcctggctg gacctcgaca gtggtcgcgg
     2461 tggccggcgt cggagcggtg cagctgctgt gtctgggaat cctcggtgag tacgtgggca
     2521 ggatgtatgc ccacctgcag gcccggccga cctacttcgt cgcgtatgac tcgatccagg
     2581 acgggacagc caacacccgg accagcccca cgcgggactc cgacgccgac tccgacgctg
     2641 gagccgtcaa gcgcgtggac gcgcctgtgc cagcagagtc accccgggca tagccttcac
     2701 cgggaggtag cgctcgaggg tgaccacggc ccgcagaccg gcgttgacca gcggcgggac
     2761 gtgctcgagg tccgagccgg acgccttgcg tcgccgcatc gccacgatcg ggcggagcag
     2821 gacgttccac gaggacaggg acgtcacctc gaacccgccg cgttcgagta cgtcgttcag
     2881 cgtggtgcgt gtgtagcgac ggacgtggtc gacggcgacg tcgtggtcag accacagcct
     2941 ggggtcggca ggcaccgcga tcagaaaccg gccatcaggt cgcagtgtgc gcaggacctc
     3001 cgcgacggcc gcgtcgtcat cgaggatgtg ctcgagcacg tcgaaggcca ccacgagatc
     3061 gaggctggcg tcggccacag ggagggcggt cgcgtctcca cgcagcaccg gcagcccacg
     3121 ttcggcggcg acggcggcgc cgtccgcccc gtactccagc gcggccactg accagccggc
     3181 gccctgcagg acgcgggtgt tgccccctcc cgcggcgccg atatccatgg cccgtccggg
     3241 cttcaggtcg gcgatggcac gggcgagcag gtgccgccgc tcgcggtacc accaatggac
     3301 gtcctcgagc gccgcaagct tgcggacttc agtgccttcc acgatcggcc atcctgccag
     3361 caccggtccc ggccacctaa ccgtcccgcc gggcgctccc gccaggcagg accggacact
     3421 gacacaagtc aggccctgat ctgaccgtcg ccctcgacga tccacttggt cgtggtgagc
     3481 tccggaagag ccatgggacc ccgagcatgc agcttctggg tggagatgcc gatctcggca
     3541 ccaaagccga actctccccc gtcggtgaac cgggtggatg cgttgaccat gacggccgca
     3601 gcgtccacct cgttggtgaa ccgtctcgct gctgcccgat cctcggtcac gatggcctcg
     3661 gtatgtccag agccgaagcg ctcgatgtgg tccagggcgg cgtccaggtc agcgaccacc
     3721 cgcacgctca gctcgagcgc gaggtactcg gtggcgtagt ccacgtcggt cgccgcgacg
     3781 tgcgggacgc cggccaggtc ggcagctgct ccactgacct cgtcggtgtg gagcaccacc
     3841 cccgcgccgg agagctcagc aagcaccttg ggcaggaagt cgccggcgac gcgctcgtgg
     3901 accagcaggg actccgccgc gttgcacacg ctgggtcggt gggtcttggc gttgacgacg
     3961 atcgcgagtg ccttgccgag gtccgccgcg gcatcgacat agacatgaca gttgcccacc
     4021 cccgtctcga tgaccggcac ggtggactcc aggaccacgg tctggatcag acctgctccg
     4081 ccacggggga tgatcaggtc gaccaggccc cgagcggtga gcaatgcgcg gacggcatcg
     4141 cgcccgcctt cgagcagcgt gaccgcgtcg gcgggtagac cgcgctcagc cagggcgctg
     4201 cgcagcacct cgaccagcgc gcggttggtt gactccgcag cggacccgcc gcgcaggatc
     4261 acggcattcc cggacttcag gccgagaccg gcggcgtcga ccgtgacgtt ggggcgggct
     4321 tcgtagacca tgcccaccac gcccatgggg acgcgaacct gtcggatctg cagcccgttg
     4381 gccagggtcg acccgcgcac gacctccccc accggatcgg gcaggcccgc aacctcacgc
     4441 agggcctggg ccaccgcggc aaccctcgtc cggtccaggg ccagccggtc caagagtccc
     4501 tgtgccatcc cagaaccacg gccgcgagcg aggtctgtct cgttggcgag cacgatctcg
     4561 tcggtcgcgg ccaccagagc atcggccatc gcttcgaggg cggcgtcctt ctcggcccga
     4621 tgcagcaacg caagacgtct cgaggccacc cgggccgccc gagcggccac cgccacctgc
     4681 tcgaccacag ccggatcgat ggtctgactg tcctggccca cgacctcacc catgccttca
     4741 agggtatgcc gccgtgcccg gcatacggac gcttgtcccg ctggttgaat gacccgggtg
     4801 agcatcctgt cgatccagtc gtcggtggcc tacgggcatg tcggcaacag cgccgccgtc
     4861 tttccgttgc aacgtctggg aatcgaggtc tggccgattg tcaccgtgca cttctccaac
     4921 cacacggggt acggcgcgtg gcggggtccg ctgctcgcgg cagcggacct tcgcgaggtg
     4981 ctgaccggca tcgaggagcg cggggtcctg ggccgctgcg atgccgtgct gagcggctac
     5041 cagggagccg aggaggtcgg cgaggtggtc ctcgacgcgg tggcgcgggt gaaggccgcc
     5101 aacccgaggg cggtgtactg ctgcgacccc gtgatgggcg acaccgggcg cggcttcttc
     5161 gtgcgccccg gcatcccgga gttcatgcgt gaccacgtca tcccgagggc ggacatcgcc
     5221 acccccaacc acttcgagct cgacttcctc accgggcgcg ccgagcgcag cacgacgatg
     5281 gccgccgtgc tcgacgcggt ggacgacctg cgcgcgatgg gaccgagcac ggtgctggtc
     5341 acctcactgg tccacgacgg catgagcccg gacaccctgg agctgctggc ggccgacgac
     5401 gcgggtgcgt ggctggtcag caccccgctg ctgcccatct cagtcaacgg cgcaggcgac
     5461 ctcacgtcgg ctctgttcct ggctcatctg ctcgaaactc gatctgcggc aacggcgctg
     5521 gcgcgcaccg cctcctcggt gtggggggtt ctggaggaga ccgcccggtc cggcgagcgc
     5581 gagatccaga tcgtcgccgc ccaggaatgc attgcccacc ccgacgagcg cttcgaggta
     5641 ctggccctgc gctgaccggt cggtcagctc accacgagct cggctctcag agcaccacga
     5701 ggtcgtcgcg atggacaacc tcgcgctcgt actcgggtcc gagcgacttg gccagctcgt
     5761 gggtcgagcg gcccagcatc ccgggcagct cggcagaggt gtagttgacc agcccgcggg
     5821 cgatgacccg gccgtcggtc gtgcacaggt ccaccgggtc gccctcggtg aaggtgccct
     5881 ccaccgcgct gatgcccgcc ggtagcaacg aggtgcgccg ttcggtgacg gcccgcaccg
     5941 cgccctcgtc caggaccagg cggccgcgtg gcgtcgtcgc gtgggcgagc cacagcttcc
     6001 gcgaggttcg gcgagagccg ttcgggacga agacggtacc cacgtcggcg ccctcgagcg
     6061 cctgctggat ccgctccgcg ctcgtgagca cagtggtgat cccggcggag ttcgcgatgg
     6121 acgccgcctc gaccttggtg accattcctc cgctgccgac actggacccc gtgccaccga
     6181 tggtgatgtc gtccaggcct gcgccgccga cgaccagcgg cacgcgggaa ctgccctcgc
     6241 gactgggggg cccgtcgtac agggcgtcca cgtcggtcag caggagcagc ccgtcggcgt
     6301 ggaccagatg ggccaccagc gaggccaggc ggtcgttgtc gccgaaacgg atctcgtgcg
     6361 tcgccaccgt gtcgttctcg ttgacgatcg ggacgattcc gagctccagc agacggtcca
     6421 gcgtgcgccg cgcgttcgtg tagtgcgatc ggcgggtcat gtcgtcggcg gtgagcagta
     6481 cctgcccgac ggtgagtcca tgaaccccga aggcccgttg gtatgccgcg acgagggctc
     6541 cctggcccac actggccgcc gcctgctgcg tcgcgaggtc gagcgggcgc cgggccaggc
     6601 caagaggccc gataccggca gcgatcgcac ccgaggagac cagaaccacc tgctgcccgc
     6661 tcagacgccg cgcggccagg gcgtcgacga tcgcgacgag ccgctcctcg tcgatcgccc
     6721 cgctgtcagc cccggtgagc gaggacgaac cgaccttgac gacgagccgc ttggcgcggg
     6781 ccacgtcctg ccgtcggtcg gcggcgctca cgcctactcc tcgtcctcgg tgcgggcggt
     6841 cgcccagtgc ccagccttgc gctcggcagc cagctcgctg cgggccgcgg tcttggcggc
     6901 ccgccggtcg gcgtagtccg cccgcttctc gtcgcgcgtg gggcgggaag cgtcctccag
     6961 gcgtaggt
//
LOCUS       DASYFY010000343         2317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_76919, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000343 DASYFY010000000
VERSION     DASYFY010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76919"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            513..1868
                     /locus_tag="VGN19_06955"
     CDS             513..1868
                     /locus_tag="VGN19_06955"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEV7195661.1"
                     /translation="MDLLVGLITALATAMVMEPRYELGQRAVVVVALPGLWLLALLAT
                     HGYERRYLGIGPEEYRSVMRSVVYIVGGTAIVSYAAHLSVPRSLVVFGAPLLFVLGLG
                     SRHLLRRRLVRRRLVGLDTQPTVIIGNARSVGPMIREIKRAPEQGLRVVAACVSGLEL
                     GGDLPSEVEGVPVFGYPDEAMSAVDLFDAEVVAVSSDPDLHGPELRRLAWSLEEREVD
                     LVVSPGLLGVAGPRLSIRPAAGMPLLHVERPVMSGARRAFKRAVETALTVVLMLFALP
                     VLLVITVAIRLDSSGPVLFRQKRVGARGTEFDMIKFRTMCMDAEARLAELQRDAGNDV
                     LFKMKDDPRITRVGKVLRRFSLDELPQLINVLRGEMSLVGPRPPLLREVEAYEPDAVR
                     RLRVKPGLTGLWQVSGRSDLSWDESLRLDLWYVDNWCLALDLQILFRTARAVLRGAGA
                     Y"
     gene            1868..>2317
                     /locus_tag="VGN19_06960"
     CDS             1868..>2317
                     /locus_tag="VGN19_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011777094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HEV7195662.1"
                     /translation="MNRRWIGLGGAAALVASALAVGVSSPAAASPCDPGGNAIVCENS
                     KPGTPQAVWDIQGSGDATIQGFATSMSVNLGDTESFKIDTTATAYTIDIYRLGWYNGD
                     GARKVASVSSVAQDQPDCLTDSTTGLVDCGNWSVSASWAVPSDAVSGI"
BASE COUNT          333 a          758 c          818 g          408 t
ORIGIN      
        1 cgcatggccc gccctgggcg cgtgtcgctg tcatgggggt ccgggggtgc atgtgctaac
       61 gcacgccaac gctgcgtaca gcaggcaccc gtctcccatc gctcggcttg tctccgtcgc
      121 ggaggtgacc gacctacgtc acgtgaggta ggacagcgtc ggtagtcggc cctcacgtcg
      181 caggagtagg ccgcgaaatc cgttgcacca taacctgttt cgtaagcagg ggagcagcac
      241 acattgccct gtcggcgagc catcaccggg tctaacgtgc tcgtcaggca cctcgttcgg
      301 gggagaggga aatgacggat cttgcagggt cggggcgacg agaggcgctc atgtcggata
      361 cgacagccgg tctggtcgcg ggcagagttt ctggtcacgg gcgacggcat gcgttgatgc
      421 cacgcaggtg ggggacgccg gctggggcga gtgcggtcac ggtcaggaag cacgccgcat
      481 gggacgtctc gtaccgccgg caggccgttc gcgtggatct cctggtcggg ctcatcacgg
      541 cactggccac cgcgatggtg atggaaccca ggtacgagct ggggcaacgg gctgttgtgg
      601 tggtggccct tccggggctg tggctgctgg cgttgctcgc cacccacggc tacgagcggc
      661 ggtacctcgg tatcggtccc gaggagtacc ggtccgtcat gcgctcggtc gtctacatcg
      721 tgggcggcac cgcgatcgtg tcgtatgccg cgcacctgag cgtgccccgc agcctcgtgg
      781 tgttcggtgc gcccctgctc ttcgtcctgg gcctcgggtc gcgacacctg ctccgtcggc
      841 gtctggtgcg ccgccgcctc gtcggcctcg acacccagcc caccgtcatc atcggcaacg
      901 ccaggtccgt cggaccgatg atccgcgaga tcaagcgcgc ccccgagcag ggcctgcgcg
      961 tggtcgcggc gtgcgtctcg ggactcgagc tgggtggcga cctgccgtcg gaggtcgaag
     1021 gagttccggt cttcggctac cccgacgagg cgatgtcggc cgtggacctc ttcgacgccg
     1081 aggtggtggc ggtgtctagc gatcccgacc tgcacggacc cgagctgcgt cgactggcct
     1141 ggtcattgga ggagcgcgag gtcgacctcg tcgtctctcc gggactgctc ggagtggccg
     1201 ggccgcggct ctcgatcagg cccgcagccg gtatgccgtt gctccacgtc gagcggcctg
     1261 tcatgtccgg cgctcgacgg gcgttcaagc gggcggtgga gaccgctctc accgtggtgc
     1321 tcatgctgtt cgcgctgccg gtcctcctgg tcatcacggt ggcgatccgg ctcgactcca
     1381 gcggcccggt cctgttccgg cagaagcggg tcggcgcccg gggcaccgag ttcgacatga
     1441 tcaagttccg caccatgtgc atggacgccg aggctcggct cgccgagctc cagcgcgacg
     1501 ccggcaacga cgtgctgttc aagatgaagg atgacccgag gatcacgcgg gtcggcaagg
     1561 tgcttcgcag gttctccctg gacgagctgc cccagctgat caacgtgctc cggggcgaga
     1621 tgtcgctcgt cggcccgagg cctccgctgc tgcgcgaggt cgaggcctac gagcctgacg
     1681 cggttcgccg ccttcgggtg aagccaggtc tcacgggact ctggcaggtg agcgggcgca
     1741 gcgacctgtc ctgggacgag tccctccgac tggacctgtg gtacgtggac aactggtgcc
     1801 tcgcgctcga tctgcaaatt ctcttccgca cggcgagggc cgtgttgcgg ggcgccggag
     1861 cgtattgatg aacagacgct ggatcgggct tgggggggct gccgcattgg tggcctccgc
     1921 ccttgccgtg ggcgtttcct cgcccgcagc cgccagtccc tgcgacccgg gtggcaatgc
     1981 catcgtctgc gagaacagca aacccgggac gccgcaggcc gtctgggaca tccagggcag
     2041 cggagacgct acgatccagg gcttcgccac gtccatgtcg gtcaacctcg gggataccga
     2101 gagcttcaag atcgacacca cggcgacggc atacaccatc gacatctatc ggctcggttg
     2161 gtacaacggc gacggcgcgc gcaaggtcgc gagcgtcagc tctgtagcgc aggaccagcc
     2221 ggactgcctc accgactcga ccacgggcct ggtcgactgc ggcaactggt ccgtgtccgc
     2281 atcgtgggcg gtcccctctg acgcggtcag cgggatc
//
LOCUS       DASYFY010000344         3963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_445080, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000344 DASYFY010000000
VERSION     DASYFY010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3963
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445080"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1014
                     /locus_tag="VGN19_06965"
     CDS             151..1014
                     /locus_tag="VGN19_06965"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005152658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEV7195663.1"
                     /translation="MSRNDVLVDADWVQAHLDDPKVVIVEVDEDTAAYDKNHIRNAVR
                     IDWKRDLQDPVRRDFVNQQQFEALLSERGIGNDDTVVLYGGNNNWFASYAYWYFKLYG
                     HSDVKLLDGGRKKWELDSRELVVEQPTREATSYTAQPQDQAIRAYRDDVVAAIGTDNL
                     VDVRSPDEYSGKLLAPAHLPQEQSQRPGHVPTARNIPWSKSANDDGTFRSDDELTALY
                     EAEGVDLAKDTIAYCRIGERSAHTWFVLHELLGQANVKNYDGSWTEYGSLVGVPVSLG
                     SNPGSPEGGQQ"
     gene            1011..1310
                     /locus_tag="VGN19_06970"
     CDS             1011..1310
                     /locus_tag="VGN19_06970"
                     /inference="COORDINATES: protein motif:HMM:NF018867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1416 domain-containing protein"
                     /protein_id="HEV7195664.1"
                     /translation="MTASCGAPAGGFSIEGVDVAKETVIQGAVSKDGAPVTGYVRLLD
                     STGEFTAEVPTSPEGGFRFFAAPGSWTVRALVPGGTVDASVEATLGEVAEVALAV"
     gene            1604..2137
                     /locus_tag="VGN19_06975"
     CDS             1604..2137
                     /locus_tag="VGN19_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FABP family protein"
                     /protein_id="HEV7195665.1"
                     /translation="MPLEIPSDLHPNCVPLAFLLGTWAGAGVGGYPTIESFNFGQEAV
                     FSYTPDKPFLKYESRSWLLDEDGNQVRPLAMESGFWRPQARTEENGTAGTTRTHLEVV
                     LSHPTGFAEIWVGEADGAKVELRTDVVARTETAKEYTAGHRLYGLVQGDLLWAYDMAA
                     MGQSMQSHLSAQLKPVK"
     gene            2206..2655
                     /locus_tag="VGN19_06980"
     CDS             2206..2655
                     /locus_tag="VGN19_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEV7195666.1"
                     /translation="METAPTDLTKELRAKGYRLTPQRQFVLQAVATLDHATPDAICEE
                     VRRTARGVNLSTVYRTLELLEELGLVTHTHLGHGAQIYHTADQPAHVHLVCRGCARIL
                     EAADSVAEPLVERLMEEYGFQTDVRHLAVFGMCAECREREDRAGAGE"
     gene            complement(2686..>3963)
                     /locus_tag="VGN19_06985"
     CDS             complement(2686..>3963)
                     /locus_tag="VGN19_06985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195667.1"
                     /translation="PAATKPVVRSASGTTPNKQASPSPSVSSSPPDSSISHADLDAFV
                     ATHSGALKSKNRAGFVAAVDPKHRDLVTSQGQLFDNLQKIPFASARYALTMVDQESSD
                     PRSATSTAKVTVAFDHQITGVDSVPVEERYTWTVQRSGLTGPLAVTAVTGAPSEHNYP
                     APWDAVAGLTVMTRPKVVIMADNTSVSFAKSHADALERDAEYDFAHWTGGTGTAPGFA
                     VFLTADRSRYDGIYSQNRAESVGVTVPIAAAGKDDGFYPSSRIAVDTTQYKNVDPADA
                     DIVFKHEMAHAMIGPFEDQSAGSGQEHLWAIEGFAEWESQRMYSTAQLLYDGVTLHAY
                     VAKHGAPNALPTDSQVYSSNSDTSALGYFYAHMAVRYMASKYGPAKVDQFMLAVYQHA
                     TRSTCVDDAMKSVLGISTNQFTQGFAKWLRSSV"
BASE COUNT          634 a         1390 c         1313 g          626 t
ORIGIN      
        1 gtatgacaga cgggccaccc tctgccctca gcgcggaccc aagcaagaca cccacgtgct
       61 tccgcatgcc cgcggccatg gaacaaccgt gaccacgcgg gcgctcctct actccgatcc
      121 gaaccccgaa ccatccggag ggactcccca atgagtcgca acgacgtcct ggtcgacgcc
      181 gactgggtcc aggcgcatct ggacgatccg aaggtagtca tcgtcgaggt cgacgaggac
      241 accgccgcct acgacaagaa ccacatccgc aacgccgtcc ggatcgactg gaagcgcgac
      301 ctgcaggacc cggtccgccg ggacttcgtg aaccagcagc agttcgaggc gctgctctcc
      361 gagcgcggca tcggcaacga cgacaccgtg gtgctgtacg gcggcaacaa caactggttc
      421 gcctcctacg cctactggta cttcaagctg tacggccaca gcgacgtcaa gctgctggac
      481 ggcggtcgca agaagtggga gctggactcc cgcgaactgg tcgtcgagca gccgacccgc
      541 gaggccacca gctacaccgc gcagccgcag gaccaggcga tccgcgccta ccgcgacgac
      601 gtcgtggccg cgatcggcac cgacaacctg gtcgacgtgc gcagccccga cgagtactcc
      661 ggcaagctgc tggccccggc ccacctgccg caggagcagt cgcagcggcc cggccacgtg
      721 ccgaccgcgc gcaacatccc gtggtcgaag tcggccaacg acgacggcac gttcaggtcc
      781 gacgacgagc tgaccgcgct gtacgaggcc gagggcgtgg acctggccaa ggacaccatc
      841 gcctactgcc gcatcggcga gcgctcggcg cacacctggt tcgtgctgca cgagctgctg
      901 ggccaggcca acgtgaagaa ctacgacggt tcgtggaccg agtacggctc gctggtcggc
      961 gtgccggtct cgctcggctc caacccgggc tcgcccgagg gcggccagca gtgacggcct
     1021 cgtgcggcgc tcccgccggc ggattcagca tcgaaggagt ggacgtggcg aaggaaactg
     1081 tcatccaggg cgcggtcagc aaggacggcg cgccggtgac cgggtacgtg cgcctgctgg
     1141 acagcaccgg tgagttcacc gccgaggtgc cgaccagccc cgagggcggc ttccgcttct
     1201 tcgcggctcc gggcagctgg accgtgcgcg cgctggtgcc cggcggcacc gtcgacgcct
     1261 cggtcgaggc gacgctgggc gaggtcgccg aggtcgcgct cgcggtctga gccgcggcgt
     1321 ggggatgtgc cgccggtgga gctgtgtctg cctcaggtgg atctggagcg tatgagggga
     1381 gcgcccgtca ccggtcttcg gaccgagggc gggcgccgtc ttgtgcgccc gcttcggggt
     1441 gacccgaaga gacccagctc accgaacgcg cccccaccgg ctccgataaa ctccccacca
     1501 tgagcgtcca gacccttttc gacatcctcc tggtcctggt ggccctcgct gtcgtgtggt
     1561 tcgcgtcctt cacggtgctg cggctgttca agggccagag ctgatgccgc tggagatccc
     1621 ctccgacctg cacccgaact gtgtgccgct ggcgttcctg ctgggcacgt gggccggcgc
     1681 cggggtcggc gggtatccga cgatcgagtc gttcaacttc gggcaggagg ctgtgttctc
     1741 ctacacgccc gacaagccct tcctgaagta cgagtcgcgc tcctggctcc tcgacgagga
     1801 cggcaaccag gtccgtccgc tggccatgga gtccggcttc tggcgtccgc aggcccgcac
     1861 cgaggagaac ggcaccgccg gtacgacgcg cacgcacctc gaagtggtcc tgtcccaccc
     1921 gaccggcttc gccgagatct gggtcggcga ggcggacggc gcgaaggtcg agctccgtac
     1981 cgacgtggtc gcccgcacag agacggccaa ggagtacacc gcgggccacc gcctgtacgg
     2041 cctggtccag ggcgacctgc tgtgggcgta cgacatggcg gccatgggcc agtcgatgca
     2101 gtcgcacctg tcggcccagc tcaagccggt caagtaaggc acccgcgcac tgtccgcaca
     2161 tgaacggtgg cgacgcctgt ccccacctgg tgggatagta gcggtatgga aaccgcgccc
     2221 acggacctga ctaaggagct gcgcgcaaag ggctaccgtc tcacgccgca gcgccagttc
     2281 gtcctacagg ctgtggccac cctggaccat gccacccccg acgccatctg cgaggaggtc
     2341 cgccgtaccg cccgcggcgt gaacctctcg acggtctacc gcaccctgga actcctggag
     2401 gagctcgggc tggtgacgca cacgcacctg ggccacggcg cgcagatcta ccacacggcg
     2461 gaccagccgg cgcacgtgca cctggtgtgc cgtggctgcg cgcggatact ggaggccgcg
     2521 gactcggtgg cggagccgct ggtggagcgg ctgatggagg agtacgggtt ccagacggac
     2581 gtacggcacc tggcggtgtt cgggatgtgc gccgagtgcc gcgagcggga ggacagggcc
     2641 ggggcagggg agtagaaccc aaccctcagg ccgactctcc gactctcaga ccgaactccg
     2701 caaccacttc gcaaagccct gcgtgaactg gttcgtactg atccccagaa cgctcttcat
     2761 cgcatcgtcc acgcacgtcg accttgtcgc gtgctggtag accgcgagca tgaactggtc
     2821 gaccttcgcg ggaccgtact tggaggccat gtagcgcacc gccatgtgcg cgtagaagta
     2881 gcccagcgcc gacgtgtccg aattggagct gtacacctgg ctgtcggtcg gcagcgcgtt
     2941 gggcgcgccg tgcttcgcca cgtacgcgtg cagcgtgacg ccgtcgtaga gcagttgcgc
     3001 ggtggagtac atcctctgcg attcccactc cgcgaagccc tctatcgccc agaggtgctc
     3061 ctgccccgat cccgcgctct ggtcctcgaa cggaccgatc atcgcgtgcg ccatctcgtg
     3121 cttgaacacg atgtccgcgt ccgccggatc gacgttcttg tactgcgtcg tgtccaccgc
     3181 tatgcgtgag ctcgggtaga agccgtcgtc ctttcccgcc gccgcgatcg ggacggtcac
     3241 cccgaccgac tccgcgcggt tctggctgta tatgccgtcg taccgggacc tgtccgcggt
     3301 caggaacacc gcgaaccccg gcgctgtccc ggtcccgccg gtccagtgcg cgaagtcgta
     3361 ttccgcgtcc cgctccaggg cgtcggcgtg gctcttggcg aaggacaccg acgtgttgtc
     3421 cgccatgatc accaccttcg gccgcgtcat gaccgtcagt ccggccacgg catcccacgg
     3481 cgccgggtag ttgtgctccg acggcgcgcc ggtgaccgcg gtcaccgcca gcggaccggt
     3541 cagcccgctg cgctgcaccg tccacgtgta ccgttcctcg accggaacgc tgtccacccc
     3601 tgtgatctgg tggtcgaacg ccaccgtgac cttcgccgtg gacgtcgcag agcgcggatc
     3661 gctgctctcc tggtccacca tcgtcaacgc gtaccgggcg ctggcgaacg ggatcttctg
     3721 caggttgtcg aacaactgcc cctggctcgt caccagatcc cggtgcttgg gatcgacggc
     3781 cgcgacgaac cccgcgcggt tcttgctctt caatgctccg gaatgcgtcg ccacgaaggc
     3841 gtcgaggtcc gcgtgactga tcgagctgtc cggcgggctg gaggagacgc tgggcgacgg
     3901 cgaggcctgc ttgttcggcg tcgtccccga agccgatcgc accacgggct tggtagcagc
     3961 cgg
//
LOCUS       DASYFY010000345         2057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_339338, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000345 DASYFY010000000
VERSION     DASYFY010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339338"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..902
                     /locus_tag="VGN19_06990"
     CDS             <1..902
                     /locus_tag="VGN19_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195668.1"
                     /translation="RIDEDFALAEYRLGYWPAAAGLLAFVWLELIAPDNASLSTLRVA
                     IFGYLLVSLILSLTFGLDYLRQGDPFGAWSRLYGTLSPLGRRADGRWVLRSPLHGPLM
                     VTPQPGLLAVTSVMLGSTAYDGFSGETRWYTFVQSSVVPARVLQTTGLVTMCLVVAGS
                     LWVAAAVSARLSGISSRGIATAFAPSLIPIATGYLIAHYWSLWVWEGTHGLARMSDPL
                     GIGANWWGTAGVAPSAVLIGPGLVASIQVVSIITGHVMGVVLAHERAISLFPRRAAVI
                     GQIPLLALMVVYTVAGLTLLFSA"
     gene            complement(915..>2057)
                     /locus_tag="VGN19_06995"
     CDS             complement(915..>2057)
                     /locus_tag="VGN19_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195669.1"
                     /translation="AGVGEVAVVSADLRALDRTAISELHAHGVAVVGVTSAGEESHER
                     RLRQLGLSLVLSSDLTAPEIDDALDSLASQPGEFTRESLSTGRTDGAVVGGPGAGAHP
                     GAVERGRVIAVWGPTGAPGRSTVALNLAAELAPRAPTLLADCDTYGASLAQALGLLDE
                     APGMAAAARAADQGTLDLVGLARVAPQVTPGLRVLTGIPRAERWTELRAASVARVLDL
                     ARSLAMFVVVDCGFGIEDDEELSYDTLAPRRNAATLTALEVADELLVVGTADPVGLQR
                     LVRAVQDLDGIAAPAPRVVVNRVRSAAVGSRPTRRIAEALSRFAGMDNITYLPWDQET
                     LDGAMFAGLPLAEFAPQSELREALASLASSYAAQPVATRRSRRFRR"
BASE COUNT          269 a          749 c          723 g          316 t
ORIGIN      
        1 ggcgcatcga cgaggacttc gcgctcgcgg agtaccggtt ggggtactgg ccggccgccg
       61 cgggacttct ggcgttcgtc tggctcgagc tgatcgcccc ggacaacgcc agcctgtcga
      121 ccctgcgggt ggcgatcttc gggtacctgc tggtgagcct gatcctcagc ctgacgttcg
      181 gtctggacta cctgcgccag ggggatccgt tcggcgcgtg gtcacggctg tacggcacgc
      241 tgagcccctt ggggcgcagg gcggatggcc gctgggtgct gcgctcgccg ctgcacggcc
      301 cgctgatggt gaccccccag cccggcctct tggcggtgac gtcggtgatg ctcgggagca
      361 cggcctacga cgggttctcg ggcgagacca ggtggtacac ctttgtccag agctccgtcg
      421 tgccggcgcg ggtgctgcag accacggggc tcgtcacgat gtgcctcgtg gtcgccgggt
      481 cactctgggt tgccgccgcc gtctccgcca gactgtccgg gatctcctcg cgcggtatcg
      541 cgaccgcctt cgccccctcg ctcatcccga tcgccaccgg ctacctcatc gcgcactact
      601 ggtccctatg ggtatgggag gggacccacg ggctggccag gatgtccgac ccgctcggga
      661 tcggcgcgaa ctggtggggc actgccgggg tcgccccctc cgcggtgctg atcgggcctg
      721 gcctggtcgc aagcatccag gtggtctcga tcatcaccgg acacgtgatg ggcgtcgtgc
      781 tggcccacga gcgggccatc tcgctgtttc cacgccgggc ggcggtgatc gggcagatcc
      841 ccctgttggc gctcatggtg gtgtacaccg tggctggcct cacgctgctg ttcagcgcct
      901 gagccggctc ccgctcagcg cctgaatcgc cgggaacgtc tggtcgcgac cggctgcgcg
      961 gcgtacgagg acgccagcga tgccagcgct tcacgcagct cggactgcgg tgcgaactcg
     1021 gccagcggga ggccggcgaa catcgccccg tcgagcgtct cctggtccca gggcaggtag
     1081 gtgatgttgt ccatgccagc gaagcgggac agcgcctcgg caatgcggcg ggtgggtcgc
     1141 gagccgacgg cggctgaccg gacccggttg acgaccaccc gaggggctgg cgccgcgatc
     1201 ccgtcgagat cctggacggc gcggacaaga cgttgaagtc caaccgggtc cgcggtcccg
     1261 accaccagga gctcgtcggc gacttcgagc gcagtcagcg tcgccgcgtt gcgacgcggc
     1321 gcgagcgtgt cgtacgagag ctcctcgtcg tcctcgatcc cgaacccaca gtccaccacc
     1381 acgaacattg ccaggctccg cgccaggtcc agcacgcggg ccaccgaggc ggcgcgcagc
     1441 tcggtccacc gctccgctcg cggtatgccg gtcagcaccc gaagccccgg ggtcacctga
     1501 ggcgccaccc gcgccagccc gaccagatcc agcgtgccct ggtcggcggc tctggccgcc
     1561 gcagccatcc caggggcctc gtcaagcagg cctagagcct gcgcgagcga cgctccatag
     1621 gtgtcgcagt ccgccagcag cgtgggggcc ctcggcgcca gctccgcggc gaggttgagg
     1681 gccaccgtgc tgcgtccggg ggcgcccgtc gggccccata ccgcgatgac gcgaccacgc
     1741 tcgaccgccc cggggtgggc accagcgccc ggcccgccca ccacggcgcc gtccgtccgg
     1801 ccggtggaga ggctctccct cgtgaactca cccggctggc tggccagcga gtccagggcg
     1861 tcgtcgatct ccggtgccgt caggtcgctg gacaggacga gggagagccc cagctgacga
     1921 agacgtcgct cgtggctctc ctcgccggcg ctggtgaccc cgacgaccgc gacgccgtgg
     1981 gcgtgcagct cgcttatcgc agtgcgatcg agagcccgca ggtccgcgga caccaccgcg
     2041 acctctccca ccccggc
//
LOCUS       DASYFY010000346         2369 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1076903, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000346 DASYFY010000000
VERSION     DASYFY010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076903"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..792)
                     /locus_tag="VGN19_07000"
     CDS             complement(<1..792)
                     /locus_tag="VGN19_07000"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195670.1"
                     /translation="MSQPRNPTWSSSTTEHVRVNGSSVQALASLDTALARCIGTGRTY
                     GTGDHAVVAVYDATCTVDARDRIAIIGPSGSGKSTLLHLLAGLETPSAGQISWPNLGG
                     HPRDGAHRVGLVFQAPSLIPSMTVLENVELPMLLADTPAEEARQRAKSALDVLDLGGL
                     HRDLPQELSGGQAQRVVIARVLAARPRLILADEPTSQLDRHTADHVADVLVQVSDEID
                     AALVVATHDHAIGARMTHVWPMHDGRLHPAATSASLTSPTPPQPDG"
     gene            complement(789..1472)
                     /locus_tag="VGN19_07005"
     CDS             complement(789..1472)
                     /locus_tag="VGN19_07005"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195671.1"
                     /translation="MSTAATEPAVPALDATSLHRFFHAGDEETQALRGVSISIAPGEF
                     VAVVGPSGSGKSTLLSCLAGLDEPDGGTVRIDGTRITRRPEAERARLRARLVGVLTQS
                     GNLLSHLTVAQNIALARGLAGSARRGAGSHLDALGVAHRADARPDTLSGGETVRAGLA
                     VALANDPPVLLADEPTGELDSGTEAQVLALLTQRARNGTALLVASHSAAVAAAADRVI
                     TLRSGEVAL"
     gene            complement(1472..1948)
                     /locus_tag="VGN19_07010"
     CDS             complement(1472..1948)
                     /locus_tag="VGN19_07010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195672.1"
                     /translation="MVETNPPGDIPDNQAFVPYSGTGFTVTIPEGWARSSDASSVVFS
                     DKYNSITISSAPAAQAPTPATVRAVDLPKIKAASQGYVAGTVTTVQRKAGVAVLATYH
                     AYSAVSPVTGKVADEAVERYTFWRAGTSVTLTLAAPVGSDNVDPWRKVTDSFTWTK"
BASE COUNT          344 a          764 c          877 g          384 t
ORIGIN      
        1 cccgtcgggc tgtggtgggg ttgggctggt cagtgatgct gaggttgcgg cggggtgtag
       61 ccggccgtcg tgcatcggcc agacgtgggt catgcgtgcg ccgatagcgt ggtcgtgggt
      121 ggcgactacg agtgcagcat cgatttcgtc gctgacctgt accagcacgt ccgccacgtg
      181 gtcggcggta tggcgatcga gctggctggt gggttcgtca gccagaatca gccggggccg
      241 cgcggccagc acccgggcga tcacgacacg ttgcgcctgg ccgccggaca attcttgcgg
      301 caggtcgcgg tgcagcccgc cgaggtcgag cacgtccagc gcggactttg cgcgctgccg
      361 cgcctcctcc gctggggtgt cggcgagcag catgggcagt tcgacgttct cgagcacggt
      421 catgctcggg atgaggctcg gcgcctggaa caccagcccg acgcggtgcg ccccgtcgcg
      481 cggatggcct cctaggttgg gccaactgat ctgcccggcg cttggtgttt cgagcccagc
      541 cagcaggtgc aacagggtcg acttgcctga cccggaaggg ccgatgatcg cgattctgtc
      601 gcgggcgtcg acggtacagg ttgcgtcata gacggcgacc accgcgtggt cgccggtgcc
      661 gtaggtgcgg ccagttccga tgcagcgagc aagcgccgtg tcgagactcg cgagtgcctg
      721 cacactcgac ccgttgacgc ggacatgctc ggtggtggag ctgctccagg tcgggttgcg
      781 gggctgactc acagggccac ctcgccactg cgaagcgtga ttacccgatc ggccgctgcg
      841 gccacagcgg cgctgtggct ggcgaccaag agggccgtgc cgttgcgggc gcgttgggtc
      901 agcagggcca gcacttgagc ctcggtgccg gagtcgagtt caccggtggg ctcatcggcc
      961 agcagcacag gagggtcgtt ggccagcgcg acggcgagcc cggcacggac cgtctcgccg
     1021 ccggagaggg tgtcggggcg agcgtcggcc cggtgcgcca cgcccagcgc atccaggtga
     1081 ctgcccgcgc cgcgccgggc ggagccggcc agaccgcggg cgagcgcgat gttctgtgcc
     1141 acggtgaggt ggctgagcaa gttgccgctc tgggtcagca cgccgacgag tcgtgctctg
     1201 agccgggccc gctcggcctc cgggcggcgg gtgatccggg tgccgtcgat gcgcaccgtg
     1261 cccccgtcgg gctcgtccaa gcctgccagg cacgacagca gggttgactt accggatccg
     1321 gacggcccga cgaccgcgac gaactcgcca ggcgcgattg agatcgacac gccgcgcagc
     1381 gcctgagtct cctcgtcgcc ggcgtggaag aaccggtgca gcgatgtcgc gtccagcgcc
     1441 ggcaccgctg gttcggtggc tgcggtgctc atcacttggt ccaggtgaag gagtcggtga
     1501 ccttgcgcca cgggtcgacg ttgtccgacc cgaccggtgc ggcaagcgtc aacgtcaccg
     1561 acgtcccggc gcgccagaac gtataccgct ccacggcctc gtcggcgacc ttgccggtga
     1621 ccgggctgac cgcggaatag gcatggtacg tggccaaaac ggcgacgccg gccttgcgct
     1681 gcacggtcgt caccgtcccg gcgacataac cctgggaggc ggccttgatc ttgggcaggt
     1741 cgactgcgcg gaccgtggcc ggcgtgggcg cctgggctgc tggcgcggaa ctgatcgtga
     1801 tggagttgta cttgtcggag aacaccacgg acgaggcgtc cgaggatcgg gcccagccct
     1861 cgggaatcgt gacggtgaat cctgtaccgc tgtagggaac gaacgcctgg ttgtctggga
     1921 tatcgcccgg cgggttggtc tcgaccacgg cgggcgccga gtgactcgct ggcggcgtct
     1981 ggctcgactg cgacgtcgac tgcgacgtcg acggtgacgt tccagcgcgt ggggaactgc
     2041 atccggcgag cgctaccaga gctgcgagcg ccaccgcccc gccggccaac gcccatcgcg
     2101 tgggcagcgt ttcgtgggct tgctgatgtg ggggacgctg tgctcgcctc atcgggtctc
     2161 gtttcgtcgt caaggtctgc cggacggacc gctcggtcct cactgtcgac gctaggagac
     2221 ggacagcaat cgcacgcacc ccaatgggta aggcgacggc aagatctggc tttcgaaccc
     2281 tgcgcgcacc cgtaccgcaa gaatgccgct gccacactgg cgtccacgac gtttgccgaa
     2341 cgcgggggcg gccggagcaa gaacagggg
//
LOCUS       DASYFY010000347         1609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1812085, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000347 DASYFY010000000
VERSION     DASYFY010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1812085"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..867)
                     /locus_tag="VGN19_07015"
     CDS             complement(79..867)
                     /locus_tag="VGN19_07015"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195673.1"
                     /translation="MTVHTAYQQGTPCWVDLQTSDQEAAKAFYGQLFGWDYDDRPMPQ
                     GGPYSMALLGGRTVAAIAPQTPDQAAAGAPPMWNTYLAVDDVDASTALVSDAGGQVAM
                     EPFDIQDSGRMSYVADPSGAYVGLWQAGTHLGAQLTNEPGAVTWNELVTADGAQALPF
                     YEKVLGVQTVTVPMGPDFSYTMFQVGERQVAGSTAPQMDGVPNHWNVWFEVASVDETA
                     ARIRDLGGELVVEPQDMPVGRMAVARDPQGGYFNLLQPAPQPEA"
     gene            complement(917..>1609)
                     /locus_tag="VGN19_07020"
     CDS             complement(917..>1609)
                     /locus_tag="VGN19_07020"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03086 family metal-binding protein"
                     /protein_id="HEV7195674.1"
                     /translation="VAERTLVRLVHHGLTKEQAASHLEGWNHYFERLERAAAVGDAGP
                     DEWAWAPRDLDLLTSADASLAVLLRVLQPVTADDRGKPTPCKDYTVHQLAEHLFGTLA
                     FVGGLAGLEVVRTPQPTLEAAVAEVAQQVNEAWARRGVEGTATSGDSELPASVAVGIL
                     NLEYLLHAWDFAQATGQELHVSQEVAQFVHDLGERIIPGARESGSFGPAVEVSERASV
                     LDRLVALSGRAA"
BASE COUNT          221 a          558 c          592 g          238 t
ORIGIN      
        1 cggggagggc gagggcgccg cctgcgcacc ggatgcggaa gcggcggttc gtggtgccac
       61 gtgggcgcga cgggtcggtc aggcctccgg ctgcggcgca ggctgcagga ggttgaagta
      121 cccgccctgg gggtcgcgag ccacggccat ccgcccgacc ggcatgtcct gcggctcgac
      181 caccagctcg ccgccgaggt cacggatcct tgcggccgtc tcgtcgacgg acgcgacctc
      241 gaaccacacg ttccagtggt tgggcacacc gtccatctgc ggcgcggtgc tgccggcgac
      301 ctgacgctca ccgacctgga acatcgtgta gctgaagtcg ggtcccatcg gcacggtgac
      361 ggtctggact ccgagcacct tctcgtagaa gggcagcgcc tgcgccccat cggcggtcac
      421 gagctcgttc cacgtgacgg cgccgggctc gttggtgagc tgggccccca ggtgcgttcc
      481 agcctgccag agccccacgt acgcacccga cgggtccgcg acatacgaca tccgcccact
      541 gtcctggatg tcgaacggct ccatcgccac ctgccccccg gcgtcactca ccagggcagt
      601 cgaggcgtcg acgtcgtcga cggcgagata ggtgttccac atggggggcg caccggccgc
      661 ggcctggtcc ggggtctgcg gggcgatcgc cgcgacggtc cggccgccga ggagcgccat
      721 cgagtatggg ccgccctgcg gcatgggccg gtcgtcgtag tcccagccga acagctggcc
      781 atagaacgcc ttggccgcct cctggtcgga ggtctggagg tcgacccaac agggggtgcc
      841 ctgctggtat gccgtgtgaa cagtcatggt gaggcctttc gtgggttggt ggctgcgaag
      901 cgttgtggcg gtcgcctcag gcggcgcgac cggagagggc gacgagccgg tcgaggacgg
      961 aggcgcgctc tgacacctcg acggccgggc cgaaggagcc gctctcccgg gcgcccggga
     1021 tgatccgctc gccgaggtca tgcacgaact gcgcgacctc ctgcgacacg tggagctcct
     1081 ggccagtcgc ctgggcgaag tcccaggcgt gcaggaggta ctcgaggttg aggatgccca
     1141 cggccacgct ggcgggcagc tccgaatcgc cggacgtcgc cgtaccttcg acgccgcgcc
     1201 gggcccacgc ctcgttcacc tgctgggcca cctcggcaac ggctgcctcc agcgtcggct
     1261 gcggggtgcg cacgacctcc aggccggcga ggccgccgac gaaggccagc gtcccgaaga
     1321 gatgctcggc gagctggtgc acggtgtagt ccttgcaggg cgtcggcttg ccacggtcgt
     1381 ccgccgtcac gggctggagc acccggagca ggacggccag gctggcgtcg gcgctggtga
     1441 ggaggtcgag gtcccggggc gcccaggccc actcgtccgg accggcgtcg cccaccgcag
     1501 cggcccgctc gaggcgctcg aagtagtggt tccagccttc gaggtggctt gctgcctgct
     1561 ccttggtcag accgtggtgg accaggcgca ccagggtgcg ctccgcgac
//
LOCUS       DASYFY010000348         7405 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_655327, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000348 DASYFY010000000
VERSION     DASYFY010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7405
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_655327"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..922)
                     /locus_tag="VGN19_07025"
     CDS             complement(<1..922)
                     /locus_tag="VGN19_07025"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEV7195675.1"
                     /translation="MTTEAITSDGGSFDAPNARRIGPYRLVEQLGEGGMGVVHLALDP
                     HGRAVALKLLRPHVAHDSDARSRLRREVEVLGRIRDPRVAAVIDADLDCDRPYLVTRY
                     VPGPPLDQVVGQHGPVVGADLLRLGRGLADALHAIHDADVIHRDLKPGNVLMLEGDPV
                     LIDFGIAHVADDVRITLTGLVMGTPGYLSPEVVEGAPVTVATDWWGWAATLAFAASGA
                     PPFGRGPMDVVLSRVSRGDADLGSVDPRLSPLLYAALSPDPSRRPDADEVVDALQRYA
                     EGRPVTDALHVSPRHTQVLRAGGTEAWERPV"
     gene            complement(964..1392)
                     /locus_tag="VGN19_07030"
     CDS             complement(964..1392)
                     /locus_tag="VGN19_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEV7195676.1"
                     /translation="MRISDVVRRKGDAVVTVKPGETVERLLELLEEHRIGALVVSVDG
                     ETVAGIVSERDIVRHLHREGAAVLQAPISQIMTADVRTCGPDVPIDELARTMTEHRIR
                     HVPVVVDGKLRGIVSIGDVVKNRIDELQDERDQLVGYIQQ"
     gene            1481..3001
                     /locus_tag="VGN19_07035"
     CDS             1481..3001
                     /locus_tag="VGN19_07035"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HEV7195677.1"
                     /translation="MPRPSETFDLVIAANRLPVDRVLAPNGEVSWRTSPGGLVTAMES
                     VMKGREGAWVGWAGEAGEAPEPFVESGMYLRPVPLSDEDIAHYYEGYSNDTLWPIYHD
                     VIVPASFHRYWFNAYERVNRRFAEAISEVAAPGATVWVHDYQLQLVPAMVRELRPDVR
                     IGWFNHIPFPPVELFAQLPWRRALLEGLLGADYLGFQRVADAQNFVRACRQLLGLATK
                     GDTVSVERSENARRVRASAVPISIDFQGLQEVARMPETQARAKEIRESLGNPKTLLLG
                     VDRLDYTKGIGHRIKAYGELLEEERVAPPQETFVQVATPSRERVAAYRELRQEIEGEV
                     GRLNGDHSRIGSPAVQYLHHSYPRQEMAALYLAADVLLVTPLRDGMNLVAKEYVACRT
                     DEGGALVLSEFAGAFHELHQAFVCNPHDIEGLKQTIMRAIETPEKDKRRLMRAMRRRV
                     ADHDVQRWAQRFLENLDSAPDRPSRTVREREDDEAQATADLAAREDHEATTARKSR"
     gene            3001..3768
                     /gene="otsB"
                     /locus_tag="VGN19_07040"
     CDS             3001..3768
                     /gene="otsB"
                     /locus_tag="VGN19_07040"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HEV7195678.1"
                     /translation="MTTSAGLKAALAACATSDTLLIATDFDGVLAPLVQDPLQSRALP
                     GTLETLEELAALPATHAAVVSGRDLDTLTSLTGLAASSVTRIGSHGAESSGEDAAEAL
                     EDDQSATLDALVADLAPVVAAHPGSGLEYKPSAVVLHTRGMEGGKAAPAEAAALEVAS
                     RHTEVHVLHGKHVVEISVVKADKGTALMRLRDAVGADCVVYFGDDVTDEDVFRLLSAH
                     DVGVKVGDGTTAATHRVARPEDVASALTDLLAARRAR"
     gene            complement(3797..4810)
                     /locus_tag="VGN19_07045"
     CDS             complement(3797..4810)
                     /locus_tag="VGN19_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEV7195679.1"
                     /translation="MKARLADIAAHADVSEATVSRVLNGKPGVADSTREAVLTSLDVL
                     GYDRPSRLRRRSADLIGLIVPELTNPIFPAFAQIIETTLARHQFTPVLCTQTPGGMHE
                     DDYVQMLLDRGVAGIIYISGQHADTTTDPHRYTRLRERGLPIVLVNGYNEAIDAPFIS
                     NDDVASMELALTHLVQLGHTQIGLAIGPDRFVPVIRKITGFRSSMKSLLGRDDVEELI
                     ERTLFSVEGGDTAGARLIEKGCTAVVCGSDLMALGAIRAARRTGLRVPDDFSVVGYDD
                     SPLIPFTDPPLTTVRQSVAAMSEAAVRALLDEIAGEGAARGEFVFRPELVVRSSTGAV
                     PPR"
     gene            5045..6160
                     /gene="ugpC"
                     /locus_tag="VGN19_07050"
     CDS             5045..6160
                     /gene="ugpC"
                     /locus_tag="VGN19_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009359150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEV7195680.1"
                     /translation="MATVKFDEATRLYPGNDKPSVDRLNIEIEDGEFLVLVGPSGCGK
                     STSLRMLAGLEEVNAGKIWIGDRDVTNLSPKDRDVAMVFQNYALYPHMTVADNMGFAL
                     KIAGEDKAEIRKRVEEAAKILDLEPYLDRKPKALSGGQRQRVAMGRAIVRSPQVFLMD
                     EPLSNLDAKLRVQTRTQIASLQRRLGVTTVYVTHDQVEAMTMGDRVAVLKDGLLMQCD
                     TPRRMYDHPDNVFVAGFIGSPAMNLLDVDVADGGVKVSGSVMPVERDVLARAHGKSIT
                     MGVRPEDLELTSEAGGGIPVSVDVVEELGADAYIYGSAKVHQHVEADEDSDAPERPFI
                     ARVDGRRPPRKGDTVYLAPKQGHLHLFDAETGLRLAD"
     gene            6304..>7405
                     /locus_tag="VGN19_07055"
     CDS             6304..>7405
                     /locus_tag="VGN19_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4032 domain-containing protein"
                     /protein_id="HEV7195681.1"
                     /translation="MALEIMAARPDPALLDLPWELPLESWPEDVLAALPRGISRHVVR
                     FVKLSGRVLAVKEIKADIAAREYQLLRSLNRLEIPCVEPFGIINGRLDGDGEPLDACL
                     VTRHLQFALPYRALFSQSLRPDTSTRLIDALAVLLVRLHLIGFWWGDVSLSNTLFRRD
                     AGAFAAYLVDAETGELHQTLTVGQREHDLEIARVNIAGELMDLEAGGFLEAGTDAVDT
                     SSRLLTRYRALWDELTGLERFERGDRWRVDERIRRLNELGFDVDELAISTDLDGTHIQ
                     IQPKVVDAGHHSRRLLRLTGLDVEENQARRLLNDLDSYRAGTDRQNEDEEIVAHHWLS
                     RIYEPITRTVPRDLASKLEPAELFHEVLEHRWY"
BASE COUNT         1220 a         2614 c         2457 g         1114 t
ORIGIN      
        1 gcacggggcg ctcccatgcc tcggttcccc ccgcacgcag aacctgggta tgccgcggac
       61 tgacgtggag cgcgtcggtg acggggcgcc cttcggcgta gcgctgaagc gcgtcgacca
      121 cttcgtccgc gtcgggccga cgcgaggggt cgggcgacaa cgcggcatac aacaggggtg
      181 aaagccgagg gtccacgctg ccgaggtccg catcgccacg gctgaccctg gacaggacca
      241 catccatcgg gccgcgtccg aacggcgggg ctccgctggc ggcaaaggcc agtgtggccg
      301 cccagcccca ccagtcggtg gcgaccgtca ccggtgcgcc ctcgaccacc tcgggcgaga
      361 ggtagccggg cgtacccatg accagccccg tcagggtgat ccgcacgtcg tcggccacgt
      421 gggcgatgcc gaagtcgatc agcaccgggt cgccctcgag catgaggacg ttgccgggct
      481 tgaggtcccg gtggatcacg tccgcgtcgt ggatggcgtg cagggcgtcc gcgagccctc
      541 ggcccagtcg cagcaagtcc gccccgacca ccgggccgtg ctggccgaca acctggtcca
      601 gcggaggtcc gggaacgtac cgggtgacca ggtacggccg gtcgcagtcg agatctgcgt
      661 cgatgaccgc cgcgacacgc gggtcgcgga tcctgccgag cacctcgacc tcacggcgca
      721 gccgactccg cgcgtcgctg tcatgcgcta catgcggtcg cagcagcttg agggcgacgg
      781 cacggccatg cgggtccaac gccaggtgga ccacccccat gccaccctca ccgagctgct
      841 cgacgaggcg ataagggccg attcgccgtg cgttgggcgc gtcgaacgag cccccgtcgc
      901 tcgtgatggc ctcggtcgtc atgcccctac ggtaagcgag actcctggac gaaccggtgg
      961 aggttactgc tggatgtagc ccacaagttg gtcacgttcg tcctgcagct cgtcgattcg
     1021 gttcttcacg acgtcgccga tgctgacgat tccgcgcagc ttgccgtcca ccacgaccgg
     1081 cacgtgccgg atccgatgct cggtcatcgt gcgtgccagc tcgtcgatgg gaacgtccgg
     1141 cccacaggta cgcacatcgg cggtcatgat ctgcgagatg ggggcctgca acactgcagc
     1201 accctcgcga tggaggtgcc gcacgatgtc gcgctcgctc acgatcccag ccacggtctc
     1261 accatcgaca ctgaccacca gggcgccgat gcgatgctcc tcgagcagct ccagcagccg
     1321 ctccacggtc tcgcccggct tcactgtcac caccgcatcg cccttacggc gcaccacgtc
     1381 cgagatcctc atgccccgac cgtagaccgg cccgggggcc accgccagag ggagccgcat
     1441 agggtggagc ctgtcgacca ttctgtggag ctgattgttc atgcccagac cgtccgagac
     1501 ctttgatctg gtcattgccg ccaaccgcct tcccgtcgac cgtgtcctcg cgccgaacgg
     1561 ggaggtctcc tggcgcacca gtccaggcgg tctggtgacc gccatggagt cggtgatgaa
     1621 ggggcgcgag ggcgcctggg tgggctgggc cggtgaggcc ggtgaggcgc ccgaaccgtt
     1681 cgtcgagtcc ggcatgtacc tgcgtccggt gcctctctct gacgaggaca tcgcgcatta
     1741 ctacgagggc tacagcaacg acacactgtg gccgatctat cacgacgtca tcgtgcccgc
     1801 gagcttccac cgctactggt tcaacgccta cgagcgcgtg aaccggcgct ttgccgaagc
     1861 gatcagcgag gtggccgcgc ccggtgccac ggtgtgggtc cacgactacc agctccagct
     1921 cgtgccggcg atggtgcgcg agctgcgccc cgacgtgcgg atcgggtggt tcaaccacat
     1981 ccccttcccg cctgtggagc tgttcgccca gctgccctgg cggcgggcac tgctggaggg
     2041 actgctcggc gccgactacc tgggtttcca gcgggtcgcc gacgcccaga acttcgtccg
     2101 cgcctgccgg cagctgctcg ggctggcgac caagggcgac acggtctcgg tggagcgctc
     2161 agagaacgct cggcgggtcc gcgccagcgc ggtccccatc tccatcgact tccagggctt
     2221 gcaggaagtg gcgcgtatgc cggagacgca ggcccgcgcg aaggagatcc gggagtcgct
     2281 aggaaaccct aagaccctgc tgctgggggt ggaccggctg gactacacca agggcatcgg
     2341 tcaccgcatc aaggcctacg gcgagctgct ggaagaggaa cgggtcgccc cgccccagga
     2401 gaccttcgtc caggtggcca cccccagccg cgagcgcgtc gccgcctatc gggagctacg
     2461 gcaggagatc gagggcgagg tcggccggct caacggggac cacagccgaa tcggttcacc
     2521 ggcggtccag tacctgcacc actcctatcc tcgccaggag atggccgcgc tgtacctggc
     2581 cgccgacgtg ctgctggtga ccccgttgcg ggacgggatg aacctcgtcg ccaaggagta
     2641 cgtcgcctgc cggaccgacg agggcggcgc cctggtgttg tccgagttcg ccggagcgtt
     2701 ccacgagctg caccaggcat tcgtctgcaa cccccacgac atcgagggtc tcaagcagac
     2761 gatcatgcgc gccatcgaga cgccggagaa ggacaagcgg cgcctgatgc gcgctatgcg
     2821 tcgccgggtc gccgaccacg acgtccagcg gtgggcccaa cgtttcctcg agaacctcga
     2881 cagcgcccct gaccggcctt ctcggacggt tcgcgagcgc gaggacgacg aagcgcaagc
     2941 caccgcggac ctggccgccc gcgaagacca cgaggccacg accgcaagga agagccgctg
     3001 atgaccacct ccgccgggtt gaaggctgcc ctggcagcct gcgccacctc cgacaccctc
     3061 ctgatcgcca ccgacttcga cggagtgctc gccccgctcg tgcaggaccc cttgcagtcg
     3121 cgggccctcc cgggcaccct cgagaccctg gaggagctcg ccgcgttgcc tgcgacccat
     3181 gccgcagtgg tttccggcag ggatctcgac accttgacat ccctgaccgg tctggcggcc
     3241 agcagcgtca cccggatcgg cagtcacggg gccgagtcca gcggcgagga cgcagctgag
     3301 gccctcgagg acgaccagtc agcaaccctc gatgccctgg tggccgatct cgcgccggtg
     3361 gtggcagctc atcccggatc cggcctggaa tacaagccgt ccgcggtcgt gctccatacc
     3421 cggggcatgg aggggggaaa ggccgcccct gccgaagccg ccgcgctcga ggtcgcttcg
     3481 cggcataccg aggtgcacgt cctgcacggc aagcacgtcg tcgagatcag cgtcgtcaag
     3541 gccgacaagg gcacggcact gatgcggctt cgtgacgcgg tcggcgcgga ctgcgtcgtg
     3601 tacttcggcg acgacgtcac cgacgaggac gtcttccgtc tgctgtcggc acacgatgtc
     3661 ggggtcaagg tcggcgacgg cacgaccgcg gcgacgcacc gcgttgcgcg acccgaggat
     3721 gtcgcgtccg ccctgacgga cctgctggcg gcccggcggg cccgctagct gtgaagtcca
     3781 gccagccagc cttccgctag cgcggcggga ccgcgccggt ggacgagcgg accacgagct
     3841 cgggccggaa cacgaactca cctctggccg cgccctcccc cgcgatctcg tcgagcagcg
     3901 cgcgcaccgc cgcctcggac atggccgcca cgctctgccg cacggtcgtc aggggcgggt
     3961 cggtgaacgg gatcagcggc gagtcgtcgt aacccactac cgagaagtcg tccgggacgc
     4021 gcaggccggt ccgccgcgcg gcacggatcg cgccgagcgc catgaggtcg gagccgcaca
     4081 cgacagcggt gcagcccttc tcgataagcc gggcgccggc agtgtccccg ccctccaccg
     4141 agaacagggt gcgctcgatg agctcctcga cgtcgtcgcg ccccaggagg gacttcatcg
     4201 acgagcggaa ccccgtgatc ttgcggatga ctggcacgaa ccggtccggc ccgatcgcga
     4261 gtccgatctg ggtgtgcccg agctggacga ggtgggtgag cgcgagctcc atcgaggcca
     4321 cgtcgtcgtt ggagatgaag ggtgcgtcaa tggcctcgtt gtagccgttg acgagcacga
     4381 tcggcagacc ccgctcgcgt agccgggtgt agcggtgcgg gtccgtggtg gtgtcggcgt
     4441 gctgccctga gatgtagatg atcccggcga cgccgcggtc cagcagcatc tggacgtagt
     4501 cgtcctcgtg cattcccccg ggcgtctggg tgcacagcac cggggtgaac tggtgtctgg
     4561 ccagggtcgt ctcgatgatc tgggcgaacg ccggaaagat cgggttggtc agctccggga
     4621 cgatgagacc gatcaggtcg gcgctgcggc gccgaagtcg tgagggccgg tcgtagccca
     4681 ggacgtccag ggaggtcagc accgcctcac gggtcgagtc cgcgacaccg ggcttcccgt
     4741 tgagcacccg gctaacggtg gcctcgctga catcggcgtg cgccgcaata tcagccagtc
     4801 tcgctttcat ggcccgaagg tagcaagaac ttgcagcgcg cttgggccag acatgcaaga
     4861 actttcagta tgccgccagg cgtgccaagg cgcgtgagtg cgaccctcgc tatgggacga
     4921 ggtctggcgc aaacgcttgc gctaggtcag actgagccca ccgtggacac cgacgtcccg
     4981 acagcagcac ctttacaacg gatcgtccgg cacgttcctg ccggtgaagg aaggcaaaga
     5041 agccatggca acagtcaagt tcgacgaggc gacccggctc tacccgggca acgacaagcc
     5101 gtctgtagac cggctcaaca tcgagatcga ggatggcgag ttcctcgtcc tcgtcggccc
     5161 ctccggatgt ggcaagtcca cctcactgcg catgctcgcc gggctcgagg aagtcaacgc
     5221 cggcaagatc tggatcggtg accgcgacgt caccaacctg tcccccaagg accgggacgt
     5281 ggccatggtc ttccagaact acgcgctgta cccgcacatg acggtcgccg acaacatggg
     5341 cttcgcgctc aagatcgccg gtgaggacaa ggccgagatc cgcaagcgcg tcgaagaggc
     5401 cgccaagatc ctcgacctcg agccgtacct cgaccgcaag cccaaggccc tctccggtgg
     5461 ccagcggcaa cgcgttgcca tgggtcgcgc gatcgtgcgc tcaccccagg tgttcctcat
     5521 ggacgagccg ctgtcgaacc tcgacgccaa gctccgcgtc cagacgcgca cccagatcgc
     5581 ctcgctccag cgccgcctgg gcgtcaccac cgtctacgtc acccacgacc aggtcgaggc
     5641 catgacgatg ggcgaccgcg tggcggtcct caaggacggc ctcctcatgc agtgcgacac
     5701 ccctcgccgc atgtacgacc accccgacaa cgtcttcgtt gccggcttca tcggctcacc
     5761 cgccatgaac ctgctcgacg tcgacgtcgc ggacggtggc gtcaaggtca gcggcagcgt
     5821 gatgcccgtc gagcgcgacg tgctcgccag ggcccacggc aagtcgatca cgatgggcgt
     5881 gcggccggag gacctcgagc tcaccagcga ggccggcggc ggcatccccg tgagcgtcga
     5941 cgtggtcgag gagctcggcg ccgacgccta catctacggt tcggcaaagg ttcaccagca
     6001 cgtcgaggcc gacgaggaca gcgacgcgcc cgagcgtccg ttcatcgccc gcgtcgacgg
     6061 ccgtcgcccc ccacgcaagg gagacaccgt ctacctcgcc cccaagcagg gtcacctgca
     6121 cctgttcgac gcggagaccg ggctgcgcct cgccgactga ttgctccacc ccgtatgccg
     6181 tggccggcgc accctcgtgg ggcgccggcc actggcatcc gcacgccgaa cctgaggcca
     6241 acctgatgac tcgatgtctg gaccccacgc ttctgaaccg ctcccctctg ggagaataag
     6301 cgcgtggctc tcgagatcat ggcggcacgg ccggaccccg ccctgctgga cctcccgtgg
     6361 gagctccccc tggagtcctg gcccgaggac gtcctggcgg ccctgccgcg gggcatctcg
     6421 cgacacgtgg ttcgcttcgt caagctctcg ggacgggtct tggcggtcaa ggagatcaag
     6481 gccgacatcg ccgctcggga gtatcagctg ctgcgcagcc tcaaccgcct cgagatcccg
     6541 tgcgtggagc cgttcggcat catcaacggt cgcctcgacg gcgacggcga accgctggac
     6601 gcctgcctgg tcacccggca cctgcagttc gcgctcccct accgcgccct gttcagccag
     6661 tctctgcggc cggacacgtc gacccggctc attgacgccc tggccgtgct gctcgtgcgc
     6721 ctgcacctca tcggcttctg gtggggcgac gtgtccttgt ccaacaccct gttccgccgc
     6781 gatgccggcg cgttcgcggc atacctggtc gatgcggaga ccggggagct ccaccagacc
     6841 ctgacggtgg ggcagcgcga acacgacctc gagatcgctc gggtgaacat cgccggcgag
     6901 ctgatggacc tggaagccgg cggcttcctc gaagccggca ccgatgccgt cgacacctcc
     6961 agccgtctgc tcacccgcta ccgcgcgctc tgggacgagc tcaccgggct ggagcggttc
     7021 gagcgcggag accggtggcg ggtcgacgag cgcatccgac ggctcaacga gctgggattc
     7081 gacgtcgacg aactggccat cagcaccgac ctggacggca cgcacatcca gatccagccc
     7141 aaggtcgtcg acgcgggcca ccactctcgg cgcctgttgc ggctgacggg gctggacgtc
     7201 gaggagaacc aggcccggcg cctgctcaac gacctcgact cctaccgggc tggcactgac
     7261 cgccagaacg aggacgagga gatcgtcgcg caccactggc tgtcgcggat ctacgagccc
     7321 atcaccagga ccgtgccccg agacctggcc agcaagctgg agcccgccga gctgttccac
     7381 gaggtgctcg aacaccgttg gtacc
//
LOCUS       DASYFY010000349         2023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_498163, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000349 DASYFY010000000
VERSION     DASYFY010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498163"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VGN19_07060"
     CDS             <1..272
                     /locus_tag="VGN19_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA alkylation response protein"
                     /protein_id="HEV7195682.1"
                     /translation="PALDAAIERVPGLVTYAAEPGAQAGARGIVEQLALTLQAALLVQ
                     LAPAEVADAFVASRLGGGHGVTFGTLDAGLSESHARALVDRAVSL"
     gene            complement(319..1230)
                     /locus_tag="VGN19_07065"
     CDS             complement(319..1230)
                     /locus_tag="VGN19_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HEV7195683.1"
                     /translation="MATNADRQAKPKRHPESTSAEATALAPVRFSDALRVRSGFVLAE
                     DDSRSTPAFEGRKKEGVAALVERAGEIGEFQERLYAESKVDGQRSLLLVVQGMDTSGK
                     GGVMRHVVGQMDPQGVRYTAFKVPTAQERKHPFLWRIRNALPVPGQIGVFDRSHYEDL
                     LVVRVHDLVPKATWSRRYAQINDFEAKAVEGGTTIVKVMLHISSDEQKSRLTRRLQRP
                     DKQWKYNPSDVDERLLWPQYQEAYQEVFDRTSTDVAPWYVVPADRKWYARLAVQSLVL
                     EHLETMDPQWPAVAFDVTAEQRRLAMS"
     gene            complement(1243..>2023)
                     /gene="zapE"
                     /locus_tag="VGN19_07070"
     CDS             complement(1243..>2023)
                     /gene="zapE"
                     /locus_tag="VGN19_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005506346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HEV7195684.1"
                     /translation="TGRGIYLDGGFGVGKTHLLASLWHEADGPKAFGTFVEYTNLVGA
                     LGFQATVEALSGHRLVCIDEFELDDPGDTVLMATLLGRLAGAGVSLAATSNTLPNGLG
                     QGRFAAEDFLREIQALSARFDVVSVGGPDYRHRDSVDSPAPLTQDEVVEAVNRTGGVF
                     DHFVDVTRHLATVHPSRYRAMLDGVGAVGWTHVRPVTDQAIALRLVVLADRLYDADIP
                     VFASGTPLGEVFSAEMLAGGYRKKYYRALSRLTALARPDLR"
BASE COUNT          327 a          710 c          671 g          315 t
ORIGIN      
        1 cccccgcgct cgacgccgcc atcgagcgtg tcccaggact ggtgacgtat gccgccgagc
       61 ccggcgcgca ggccggcgcc cgtgggatcg tcgaacagct cgcgctcacc ctgcaggcag
      121 ccctgctggt ccagctcgcg ccagccgagg tcgcggacgc gttcgtcgcg agccggctcg
      181 ggggcggcca cggggtcacc ttcggcacgc tcgacgcggg actgtccgag agccacgccc
      241 gcgccctggt cgaccgggcc gtcagcctct gagtatcgag acttgagaat ggggcactga
      301 cgctcgagcc ctgaggatct agctcatcgc caggcgccgc tgttccgcgg tgacgtcgaa
      361 ggcgaccgcg ggccactgcg ggtccatcgt ctcgaggtgc tcgagcacca ggctctgcac
      421 ggccagtcgc gcgtaccact tgcggtcggc aggcacgaca taccagggcg ccacgtcggt
      481 ggacgtcctg tcgaacacct cctgataggc ctcctggtac tgcggccaca acagacgctc
      541 gtcgacgtca ctcgggttgt acttccactg cttgtccgga cgctgcagcc gacgcgtcag
      601 cctcgacttc tgctcgtccg aagagatgtg cagcatgacc ttgacgatgg tggtgccacc
      661 ctcgacggcc ttggcctcga agtcgttgat ctgcgcatag cgccgcgacc aggtcgcctt
      721 ggggacgagg tcgtgcacgc gcaccaccag caggtcctcg tagtgcgacc ggtcgaaaac
      781 cccgatctgg cccgggaccg gaagggcgtt gcggatgcgc cagaggaacg ggtgcttccg
      841 ttcctgcgcg gtcgggacct tgaaggcggt atatcgcaca ccctgggggt ccatctggcc
      901 gacgacgtgg cgcatgaccc cgcccttgcc ggaggtgtcc atgccctgga ccacgaggag
      961 caacgagcgc tggccgtcca ccttggactc ggcatacagc cgttcctgga actccccgat
     1021 ctcgccagcc cgctcaacca gggcggccac cccttccttc ttgcgaccct cgaaggctgg
     1081 ggtggagcgg gagtcgtcct cagcgaggac gaagccggaa cgcaccctca acgcatcgct
     1141 gaagcgaact ggcgccagag cggtcgcctc ggccgaggtc gactctggat gccgcttcgg
     1201 cttcgcctgt ctgtctgcgt tcgtggccat ctgcgcatcc tgtcaccgca ggtcagggcg
     1261 cgcgagggca gtcaggcgag acagtgcccg gtagtacttc ttgcggtacc ccccggcgag
     1321 catctcagcg gagaagacct ctccgagggg cgtgccgctg gcgaacaccg ggatgtcggc
     1381 gtcgtacaac cgatcggcca gcacgaccag tcgcagcgcg atggcttggt ccgtcaccgg
     1441 gcggacgtgg gtccacccga ccgcgccgac gccgtcgagc atggcccggt agcggctggg
     1501 atggacggtg gccaggtgac gggtcacgtc gacaaagtgg tcgaacacgc cgccggttcg
     1561 gttcactgct tcgacgacct cgtcctgggt cagcggcgcc ggactgtcga cggagtcacg
     1621 atggcggtag tccggaccgc cgaccgacac cacgtcgaag cgagccgaca gcgcctggat
     1681 ctcacgaagg aagtcctcag cggcaaaccg gccctgcccc aagccgttcg gcaaggtgtt
     1741 ggacgtcgcc gccaggctca ccccagcgcc agccagccgg cctagcaacg tggccatcag
     1801 cacggtgtca ccggggtcgt cgagctcgaa ctcgtcgatg cagaccagcc ggtgcccgct
     1861 cagcgcctcc acggtcgcct gaaaccccag ggcgccgacg aggttcgtgt actcgacgaa
     1921 cgttccaaag gccttgggcc cgtccgcctc gtgccacagc gaggcgagca gatgagtctt
     1981 ccccacgccg aagccgccat cgagatagat cccgcggccg gtg
//
LOCUS       DASYFY010000350         2069 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1497002, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000350 DASYFY010000000
VERSION     DASYFY010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1497002"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..882
                     /locus_tag="VGN19_07075"
     CDS             <1..882
                     /locus_tag="VGN19_07075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195685.1"
                     /translation="NGEVLSIAVSGSTVYVGGSFTNVGGAGRSNLAALSVSGAQVQPF
                     NPVMNQPVRALAASASTLYVGGEFAKVGAASRSKLAAFSLASGALDSAWQPKANGKVN
                     TLALSTDGGRVYVGGFFTTLNGQGAYPYLGAVSPATGKNDSGFAPRSLFPVLKLVADS
                     RGVYVGQAGSGGHLLLLNQDGSLQRPVYQLDGDVQAVAVDGDSVFGGGHFTNYCVGNT
                     GSGAPFMCDKNLPRRKVLEVSVSSGQVTSWAPTLDSPFGVLSAVVDPSTHDLWLGGDF
                     TRVAGQPAAHLAKLAGS"
     gene            complement(1022..1447)
                     /locus_tag="VGN19_07080"
     CDS             complement(1022..1447)
                     /locus_tag="VGN19_07080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEV7195686.1"
                     /translation="MRKGIAMMSVAAAAAAWGGLALPAQAAVSYRVTVTCSVPKAQPE
                     RQLAPNSCLNYIPDGTQTYTAKVRDSSGSPVRGVTVKWTDSDARDGLFRINQNPCVTG
                     STGTCSAELVDRHPKAGEKIVVTASAGGSSGSGYLTFQR"
     gene            complement(1527..>2069)
                     /locus_tag="VGN19_07085"
     CDS             complement(1527..>2069)
                     /locus_tag="VGN19_07085"
                     /inference="COORDINATES: protein motif:HMM:NF014396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016158 - 3-phytase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phytase"
                     /protein_id="HEV7195687.1"
                     /translation="EGMVVDPDTGTLWADQEIVGLWKMTTDLTSPVLVHKLTRFGQKY
                     SVVSGKCKVDAASTSYGESYLPGDLEGIALYRAGTSSNGYLIISNQQKSIFTVFSRNG
                     SSYLGTLAIGGGAFDAVNATDGLDVINVNMGPKYPQGMLVTQDGKDAPEGGTNFKFTP
                     WQSVAGSMGLVVDTAGSPRN"
BASE COUNT          296 a          732 c          685 g          356 t
ORIGIN      
        1 aacggggagg tcctgtcgat cgccgtctcc ggcagcaccg tgtacgtcgg cggctccttc
       61 accaacgtcg gcggcgccgg ccggagcaac ctcgcggcct tgagcgtcag cggtgcacag
      121 gtgcaaccgt tcaaccccgt gatgaaccag ccggtgcggg cactcgcggc ctcggcctcc
      181 accctctacg tcggcggcga gttcgccaag gtcggtgccg cgagccggtc caagctggcc
      241 gcgttctccc tggccagtgg cgccctggac tccgcctggc agcccaaggc gaacggcaag
      301 gtcaacaccc tggctctgag cacggacggc gggcgcgtct acgtcggagg cttcttcacc
      361 accctgaacg ggcagggcgc ctacccctat ctcggcgccg tgagccccgc cacgggcaag
      421 aacgactccg gtttcgcccc gcgctcgctg ttcccggtcc tgaagctcgt cgccgactcg
      481 cgcggcgtgt acgtcggtca ggccggctca ggcggccacc tcctcctgct caaccaggac
      541 ggcagcctgc aacgaccggt ctaccagctg gacggcgacg tccaggctgt cgccgtcgac
      601 ggcgactcgg tcttcggtgg tggccacttc accaactact gcgtcggtaa caccggctcc
      661 ggcgcgccct tcatgtgcga caagaacctt ccgaggcgca aggtgctcga ggtctcggtg
      721 tccagcggcc aggtcacctc ctgggcgccc accctggaca gcccgttcgg cgtgctgtcg
      781 gccgtggtcg atcccagcac gcacgacctg tggctcggcg gcgacttcac ccgcgtcgcc
      841 ggacagcccg ccgcgcacct cgccaagctc gccgggagct gatcacctcg aagcccggcc
      901 ctgcgcccat cgccccccgg atcgtgacgt ccggggggcg atgtctgcac cggatccgcg
      961 gccttgagcg catcgaaaag cccccggcgc cgaagcgacc aggggctcgt cgcggtgtcg
     1021 gtcagcgttg gaacgtcaga tagccgctgc cggacgatcc acccgcggac gcggtgacga
     1081 cgatcttctc ccctgccttc gggtgcctgt cgacgagctc ggccgagcac gtgccggtcg
     1141 agcccgtgac gcaggggttc tggttgatcc ggaagagccc gtcacgggcg tccgagtcgg
     1201 tccatttcac cgtgacgccg cggaccgggg agccgctgct gtcacggacc ttcgcggtgt
     1261 acgtctgggt gccgtcgggg atgtagttga ggcacgagtt gggtgccagc tgccgttccg
     1321 gttgggcttt gggcaccgaa caggtgacgg tgacccgata gctcaccgcc gcctgtgcgg
     1381 gcagtgccag tcccccccac gccgccgctg ctgcagccac gctcatcatc gctatgccct
     1441 tacgcatgtc cgtctcctcg ggatcgaggt ggggcctcgc ggccccacca gttgaccaac
     1501 gtgtactgct gaaacgctgt cctgcctcag ttgcgggggc tgccggcggt gtcgaccacc
     1561 aggcccatgg aaccggccac gctctgccac ggcgtgaact tgaagttggt cccaccctcg
     1621 ggggcgtcct tcccgtcctg ggtgacgagc atgccctgcg ggtacttcgg gcccatgttg
     1681 acgttgatga catccaggcc gtcggtggcg ttcacggcgt cgaacgcccc gccaccgatg
     1741 gcgagcgttc cgaggtagct cgagccgttg cgactgaaga cggtgaagat ggacttctgc
     1801 tggttcgaga tgatgaggta accgttcgag gacgtcccgg cccggtagag ggcgatgccc
     1861 tccaggtcac ccgggaggta ggactcgccg tagctggtcg aggcggcgtc gaccttgcac
     1921 ttgccgctca cgacgctgta cttctgtccg aaccgggtca gcttgtggac gagcacgggg
     1981 ctggtcaggt cggtggtcat cttccacaga ccgacgatct cctggtccgc ccagagcgtt
     2041 ccggtgtccg ggtcgacgac catgccctc
//
LOCUS       DASYFY010000351         2527 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_813167, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000351 DASYFY010000000
VERSION     DASYFY010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813167"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..1206
                     /gene="fbaA"
                     /locus_tag="VGN19_07090"
     CDS             169..1206
                     /gene="fbaA"
                     /locus_tag="VGN19_07090"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEV7195688.1"
                     /translation="MPIATPEVYADMLDRAKAGSFAYPAINVSSSQTLNAAIRGFAEA
                     GSDGIVQVSTGGAEYLSGPTVKDMVTGSLALAAYAHEVAKKFDVNIALHTDHCPKDKL
                     AGFVRPLLAASTERVKAGGAPWFQSHMWDGSAVPLEENLVIARELLDLCQAARVVLEI
                     EVGVVGGEEDGVEGAIDEKLYSTPEDAIATARALGIGEHGYYLTALTFGNVHGVYKPG
                     NVKLRPEILKAAQEAVHRELATADEKPFHLVFHDGSGSAPEEIAAAVDYGVVKMNVDT
                     DTQYAFTRPVAGFMFGNYDGVLKVDGEVGNKKSYDPRAWGKEAEAGMAARVVLACQNL
                     RSAGTSAGASA"
     gene            1203..1607
                     /locus_tag="VGN19_07095"
     CDS             1203..1607
                     /locus_tag="VGN19_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3151 domain-containing protein"
                     /protein_id="HEV7195689.1"
                     /translation="MSDNLLGIPETRLPQDPAAAQLEAGVAADQVAAAYPTSSLAWAT
                     LAEDALADGRTVEGYAYARTGYHRALDSLRKNGWRGQGPVPWEHEPNRGFLRALAALS
                     TAAGAIGETEEQQRCAQFLRDSSPTGARELGL"
     gene            1678..>2527
                     /locus_tag="VGN19_07100"
     CDS             1678..>2527
                     /locus_tag="VGN19_07100"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015884114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEV7195690.1"
                     /translation="MPAIVLVGAQWGDEGKGKATDLMGSDVDYVVKFNGGNNAGHTIV
                     IEQDGKREKYALHLLPSGILTPTCTPVIGNGVVVDLAVLFQEIDGLEARGIDTSRLLV
                     SANAHIIAPYNRVLDKVTERFLGSRKIGTTGRGIGPTYADKMARNGIRVQDLFDEKIL
                     RQKVEAALALKNQILAKIYNRRAVEVDEVMDELLGYAERLRPMVADTSLVLERALNEG
                     KTVLLEAGQATLLDVDHGTYPFVTSSNATAGGACTGSGIPPTRVSGVIAILKAYSTRV
                     GEGPFPT"
BASE COUNT          424 a          881 c          856 g          366 t
ORIGIN      
        1 gtccctttga cattccctgt tcgccctgac ctgccgcggt tgcccgcact cgccggacag
       61 ctcggccgac gcctgcgccg gtgaccgcaa caggcgcggc tgtccacccg ggcggtcggc
      121 atggaaggat cggcggcaac gccccggaca agtcgaagga gacttcccat gcccatcgcc
      181 acccctgagg tgtacgccga catgctggac cgcgcgaagg ccggctcctt cgcgtacccg
      241 gccatcaacg tctcctcgtc ccagacgctg aacgccgcga tccgtggttt cgccgaggcc
      301 ggcagcgatg ggatcgtgca ggtctccact ggtggcgccg agtacctctc gggccccacc
      361 gtcaaggaca tggtgaccgg ttcgctggcg ctggcggcct acgcgcatga ggtcgccaag
      421 aagttcgacg tcaacatcgc gctgcacacg gaccactgcc ccaaggacaa gctcgccggg
      481 ttcgttcgcc ccctgctggc ggcatccacc gagcgggtga aggccggcgg cgccccgtgg
      541 ttccagtcgc acatgtggga cggctcggcc gtgccgctgg aagagaacct cgtgatcgcc
      601 cgcgagctgc tcgacctttg ccaggcggcc agggtcgtgc tggagatcga ggtcggtgtg
      661 gtcggcggcg aggaggatgg cgtcgagggc gcgatcgacg agaagctcta ctcgacgccc
      721 gaggacgcga tcgccactgc ccgcgcgctg ggcatcggtg agcacggcta ctacctgacc
      781 gcgctgacct tcggcaacgt gcacggcgtc tacaagccgg gcaacgtgaa gcttcgcccg
      841 gagatcctca aggccgccca ggaggcggtc caccgtgagc tggcgacggc cgacgagaag
      901 cccttccacc tggtgttcca cgatggctcg ggctcggctc ccgaggagat cgccgccgcg
      961 gtcgactacg gcgtggtcaa gatgaacgtc gacaccgaca cccagtacgc cttcacccgc
     1021 cccgtcgcag gcttcatgtt cggcaactac gacggcgtcc tcaaggtcga cggcgaggtc
     1081 ggcaacaaga agtcgtacga cccgcgggcc tggggcaagg aggccgaggc ggggatggcg
     1141 gcccgagtcg tgctcgcctg ccagaacctg cgatcggccg gcaccagcgc cggagcgtca
     1201 gcgtgagtga caacctgctc ggcatccccg agacacgcct gccccaggac cccgccgccg
     1261 cacagctcga ggccggcgtc gccgcggacc aggtggccgc ggcatacccc acgtcgtcgt
     1321 tggcctgggc cacgctggcc gaggacgcgc tcgcggacgg tcgcacggtc gagggctacg
     1381 cctacgcacg gaccggctac caccgcgcgc tggactccct gcgcaagaac ggctggcgtg
     1441 gtcagggacc cgtgccgtgg gagcacgagc ccaaccgagg cttccttcgg gcgctcgctg
     1501 ccctgtccac cgcggctggc gccatcggcg agaccgagga gcagcaacgt tgtgcgcagt
     1561 tcctgcgcga ctcctcgccc acaggggcac gcgagctcgg cctctaacag agcacgaccg
     1621 gtaaccttcg ggggttcggt ccggcagacc agatcgtcga gggagaggtg cggcactatg
     1681 cccgcaatcg tgctcgtggg cgcccagtgg ggcgacgagg gcaaaggcaa ggccactgac
     1741 ctgatgggca gtgacgtcga ctacgtcgtc aagttcaacg ggggcaacaa cgccggccac
     1801 accatcgtca tcgagcagga cggcaagcgc gagaagtacg ccctgcacct cctgccctcg
     1861 ggcattctca cgccgacctg cacgccggtc atcggcaacg gcgtggtggt cgacctggct
     1921 gtgctgttcc aggagatcga cggcctcgag gcgcggggga tcgacacctc tcggttgctc
     1981 gtcagcgcca acgcgcacat catcgccccg tacaaccggg tcctcgacaa ggtgaccgaa
     2041 cgcttcctgg ggtcacgcaa gatcgggacc accggtcggg gcatcggacc gacctacgcg
     2101 gacaagatgg cgcgcaacgg cattcgcgtg caggacctgt tcgacgagaa gatcctgcgc
     2161 cagaaggtcg aggccgcgct ggcgctgaag aaccagatcc tcgccaagat ctacaaccgc
     2221 cgcgccgtcg aggtggacga ggtgatggac gagctgctgg ggtatgccga gcggttgcgt
     2281 cccatggtcg ccgacacctc cctcgtcctc gagcgtgcgc tcaacgaggg caagaccgtc
     2341 ctcctcgagg ccggtcaggc gacgctgctc gacgtcgacc acggcaccta tccgttcgtg
     2401 acctcctcga acgcgacggc gggaggggcc tgcacgggct cgggtatccc gccgacccgg
     2461 gtgtccgggg tcatcgccat tctcaaggcg tactcgacgc gggtcggcga ggggcctttc
     2521 ccgaccg
//
LOCUS       DASYFY010000352         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1128591, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000352 DASYFY010000000
VERSION     DASYFY010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1128591"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VGN19_07105"
     CDS             complement(<1..548)
                     /locus_tag="VGN19_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009084142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7195691.1"
                     /translation="MPAKTRADGPSEAIIAAWRAESARLVGALVRMTRDVDLAEDLAQ
                     DALVAALEQWPATGVPQNPAAWLMTTAKRRAVDHFRRTDTLRRKVAELEHDAGGQEAR
                     MPDLDAQVDHIEDDVLRLIFLSCHPSLTPESRAALTLRLVGGLTTGEIARGFLVTEST
                     MGQRISRAKKTLSEARADFELPT"
     gene            complement(572..946)
                     /locus_tag="VGN19_07110"
     CDS             complement(572..946)
                     /locus_tag="VGN19_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEV7195692.1"
                     /translation="MPRFMGFVRMEEGVGTPPQALFDAMDAYIGERAAKGVFVDGGGL
                     YGTEDAVNFVVRQGEVSRVDGPYAEAKEVVGGWAITQYDTVEEAVADQREFAELHAKY
                     WPEVTVISTMRQISMGPEAPGA"
     gene            1154..>1669
                     /locus_tag="VGN19_07115"
     CDS             1154..>1669
                     /locus_tag="VGN19_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010549903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7195693.1"
                     /translation="MTQLVRVHNFTVSSDGYGAGEGQSLERPFGHADPGVLISWAFPT
                     ASWPGRTDSGGSRGLDDYLVREFHRNIGAEIMGRNKFGPQRGPWPDDGWQGWWGDDPP
                     FHTPVFVMTHHERPSFTLSDTTFHFVSGDPATVLKRALDAADGKDVRLGGGANTVRQF
                     LDAGLIDTLHVA"
BASE COUNT          248 a          588 c          572 g          261 t
ORIGIN      
        1 gtcggcagct cgaagtcggc gcgggcctcg gacagcgtct tcttcgcgcg cgagatcctt
       61 tggcccatgg tggattccgt gaccaggaaa ccccgggcga tctcgccggt ggtcaggccg
      121 cccaccaggc gcagggtgag ggcggccctg gactccggcg tcaggctggg atggcaggac
      181 aggaagatca ggcgcaggac gtcgtcctcg atgtggtcga cctgggcgtc gaggtcgggc
      241 atcctcgcct cctgtccccc agcgtcgtgc tcgagctccg cgaccttgcg gcgcagcgtg
      301 tccgtacgtc ggaagtggtc cacggcgcgc cgcttcgcgg tggtcatcag ccacgcggct
      361 ggattctgcg gcacaccggt agccggccac tgctcgaggg cggccacgag ggcgtcctgg
      421 gccaggtcct cggcgaggtc gacgtcacgg gtcatccgga cgagagcgcc gacgaggcgg
      481 gccgactcgg cccgccacgc ggcgatgatg gcctcggacg ggccgtcggc acgggtcttt
      541 gccggcacgc agccagcgta gtgagtcccg ctcaggcgcc gggcgcctcc gggcccatgg
      601 agatctggcg catggtcgag atcacggtga cctcgggcca gtacttcgca tgcagctcgg
      661 cgaactcgcg ctggtcggcc acggcctcct ccacggtgtc gtactgcgtg atggcccagc
      721 cgccgacgac ctccttggcc tcggcgtacg gtccgtccac gcggctgacc tcgccctggc
      781 ggaccacgaa gttcacggcg tcctccgtgc cgtacaggcc gccgccgtcc acgaacacac
      841 ccttggcggc ccgctcgccg atgtaggcgt ccatcgcgtc gaacagcgcc tgcggcgggg
      901 tgccgacgcc ctcttccatc ctcacgaaac ccatgaaacg cggcatcttg accactccta
      961 ctccttgctg gcggttgctg tcgcacgtac gtcgaacggc ggccctgcgc ttcgacatcg
     1021 acccacagag aattcttcga cgtccgatcc tgcgtggcca cacgcggtcg agtaaagcgt
     1081 ggtgcgccgc gatgagtccg gcacggtggg atggtcgaag gtgtcatcaa ccgcactttg
     1141 atgaggagca gcagtgacgc agctggtcag ggtccacaac ttcaccgtgt cgagcgacgg
     1201 gtacggcgcc ggggagggcc agagcctcga gcgccccttc ggccacgctg accctggggt
     1261 cctcatcagc tgggccttcc ccacggccag ctggcccggc cggacggact ccggcggcag
     1321 ccgcggactg gacgactacc tggtccgcga gttccaccgc aacatcggcg cggagatcat
     1381 gggacgaaac aagttcgggc cccagcgggg cccctggcct gacgacgggt ggcagggatg
     1441 gtggggggac gatccgccct tccacacgcc ggtcttcgtc atgacgcacc acgagcggcc
     1501 gtccttcacc ctgtccgaca cgacattcca tttcgtcagc ggcgatccgg cgacggtgct
     1561 gaagcgcgcc ctcgacgccg ccgacggcaa ggacgtccgg ctgggcggcg gcgccaacac
     1621 cgtccgccag ttcttggacg ccgggctgat cgacacgctg cacgtcgcg
//
LOCUS       DASYFY010000353         1604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1234470, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000353 DASYFY010000000
VERSION     DASYFY010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234470"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..512)
                     /locus_tag="VGN19_07120"
     CDS             complement(105..512)
                     /locus_tag="VGN19_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195694.1"
                     /translation="MSGTGTSEDPWVLMTPPGTSEFTMYRDETTDPVQLVCQVGSTRL
                     LYDAGVVEDLHRWLAEQGEWVELGSADEQKPAKDGTVEAWARSETNPVGGWYGLRRGY
                     RGRVGMYLPPLLEELGLAEVEHNPRNNRMRALN"
     gene            complement(509..982)
                     /locus_tag="VGN19_07125"
     CDS             complement(509..982)
                     /locus_tag="VGN19_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017198643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195695.1"
                     /translation="MPAIVGLLADDPLGAGRERPGSLAAYERAFAAIDADPAHRLVVL
                     EDDGMVVGTLQLSFLPGLSRGGAWRGQIEAVRVASSHRGHGLGERLVGWAVEESRRRG
                     CALVQLTTDKSRGDAHRFYARLGFEPSHEGLKMTLTTPSQEHKTTPSQDHEQEQG"
     gene            complement(1220..1576)
                     /locus_tag="VGN19_07130"
                     /pseudo
     CDS             complement(1220..1576)
                     /locus_tag="VGN19_07130"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
BASE COUNT          231 a          604 c          518 g          251 t
ORIGIN      
        1 cgggtcatgc cggtgttccg cctcacccgc ctgccctgac ccgctctgaa cgctctgacc
       61 gctctgaacg ctctgaacac tgtgaccgcc ggcaactcaa cctcctagtt cagcgcgcgc
      121 atccggttgt tccgcgggtt gtgctcaacc tcggccagtc cgagctcctc gagcagcggc
      181 ggcaggtaca tccccacccg tccgcggtac ccccgacgca ggccgtacca cccgcctacg
      241 gggttcgtct ccgagcgggc ccaggcctcg accgtcccgt ccttggctgg cttctgctcg
      301 tccgccgagc ccagctcgac ccactcgccc tgctccgcga gccaccggtg cagatcctcg
      361 accaccccag cgtcgtacag cagccgcgtc gagccaacct gacagacgag ctgcaccgga
      421 tcggtggtct cgtcccggta catcgtgaac tcggacgtcc ctggcggggt catcaggacc
      481 caggggtcct cgctggtgcc ggtgccgctc atccctgctc ctgttcgtgg tcctgtgacg
      541 gggtcgtttt gtgctcctgt gacggggtcg tcaacgtcat cttcaaccct tcgtgtgacg
      601 gctcgaaccc caaacgggcg tagaagcggt gggcgtcgcc gcgtgacttg tcggtcgtca
      661 gctggacgag cgcgcaacct cgcctgcgcg actcctcgac cgcccatccc accagacgtt
      721 cccccagccc gtgaccccga tggctggatg ccacccgcac cgcctcgatc tgacctcgcc
      781 aggcaccacc ccgggacagc cccggcagga agctcagctg gagggtgccg acgaccatcc
      841 cgtcgtcctc gaggacgacg agccggtgcg cagggtctgc gtcgatggcg gcaaaggcac
      901 gctcgtatgc cgcgaggctg cccggacgct cgcgcccggc gcccagcggg tcgtcggcaa
      961 gcagcccgac gatggcgggc acgtcggcgg tcgtggcgcg gcgaagctgg acgccgcctg
     1021 ccctgccacc cgagctgtcc gcggcatacc cgggctcggt cggcgcggct ggggttggcg
     1081 ctgggattgg ctctggcggc atcgcgccct cgaaccaggt gcgtccgtcg taggcgagcg
     1141 cccgcgcgag gcgcacccga gaacgctcga cgagcccatc gggcagctgg tccaccggga
     1201 accacccgac ctccagcgac tcgtcgtcgt tgacgcgggc ctgcccgctg acctggcggg
     1261 ccaggaagca cagatcgagg tagcgagcct ggtcgccgtt ggggtacgtg atcgccggga
     1321 gggtccacac tccggtcagg gcctggagct cggccgtgac tccggtctct tcctcgatct
     1381 cacgcagcag accggcagcc ggctgctcgc cgggctcgag aatgccgctg accagggacc
     1441 attcgccggt gtcagcgcgc cgaaccagca gcacctcatc ctgctcgttg cgcacgaccg
     1501 cggtcacccc gggcatccac aggggttcgt ggccgatccg ctcccgcagg gccagaacga
     1561 agtcgggggt gggcatatcg agcaccctag ccaccacgga ccag
//
LOCUS       DASYFY010000354         4435 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1601873, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000354 DASYFY010000000
VERSION     DASYFY010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1601873"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..1181
                     /locus_tag="VGN19_07135"
     CDS             96..1181
                     /locus_tag="VGN19_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEV7195696.1"
                     /translation="MDSPLDAAQLRERVQHCVDDFLRHQGEVLAEVGPDAQDLLAAVA
                     RLLTGGKRLRAAFLYWGYRATGQPDSLALVRLATAMEFFQAAALIHDDVMDDSDMRRG
                     MPAAHRSIAARHEREAWAGDAGRFGVAGAILAGDLCLNWTEELYSTSGLEPAHLARGR
                     AVFDVMRTQLMGGQFLDVVESARSWDGVSTQDQIERAERVIRYKSAKYTVEHPLLVGA
                     TAGGAAADDVSALSRYGLDLGQAFQLRDDLLGVFGDPAATGKPAGDDLREGKRTVLVA
                     HALAGTDEAGRALIAGRLGDPGLQTHEVEALRVVIVDSGAVDAVEAEITRLADSARMA
                     LKSATGLTREGVEVLDALIDSSTARVH"
     gene            complement(1276..1668)
                     /locus_tag="VGN19_07140"
     CDS             complement(1276..1668)
                     /locus_tag="VGN19_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rv2175c family DNA-binding protein"
                     /protein_id="HEV7195697.1"
                     /translation="MTENSASNDSTREPTLEELVGAWLTVPDIAERLGLALSAVRRMI
                     DDRELLAARVGERRIISVPAQFIDEAVMHHLPGTFTVLADGGMGDEEILRWMFTKDAS
                     LPSGGSPVDALVAGFKTEVRRRAMETAW"
     gene            1842..3209
                     /locus_tag="VGN19_07145"
     CDS             1842..3209
                     /locus_tag="VGN19_07145"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEV7195698.1"
                     /translation="MIALEALPSTVPQSFHAARTAVVHQANPAPHGWEVYTVRSGDTL
                     SAIATHAATTLGVLVSKNHLPGGGNQLSVGERLWVPKSAAQARIEASRAKSAAAARAA
                     ARAEAVRRATYVVRSGDTLTGIAQSHGVPLAALLKANRLSVSAVLQIGERLHLPGAGA
                     PARPAASHATPARPAAAPAISTYRVRSGDTLVAIAARTKTPLSSLYAWNHLSPISIIY
                     PGQAITVRGVPAPRAATAAGTAVTTSYVVRAGDTLSAIAAHHGVTLAALLKANRMSPA
                     AVLQIGQKVRVPGAAKARPSSGNTFAGRTYAPAIVDAATANRNRLAGRNLPNRAQTRL
                     MIIATARRHGLDPRLALAIAWQESGWSQREVSVANAIGVMQIIPSSGQWASDMVGRPL
                     NLLDTQDNITAGVSILRSLTRSTPDLKKAIGGYYQGLYSVEHNGMYPDTKSYVASVMA
                     YRARF"
     gene            3303..>4435
                     /locus_tag="VGN19_07150"
     CDS             3303..>4435
                     /locus_tag="VGN19_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEV7195699.1"
                     /translation="MSSGVTESLLGRVIDGRYRVQSHIADGGMASVYLALDTRLDRDV
                     ALKVLRRDLAQDDAFVSRFKREARSAARLSHPNVVSVFDQGDADGHMFLAMEYVPGQT
                     LREVMRAEGPLTPRAALDILAPVLQALAAAHKAGIIHRDVKPENIILREDDGTVKVAD
                     FGLARAVTTQTVTAQTGVLLGTVAYLSPEQVERGIADARSDVYAAGLILFEMLTGTKA
                     FTGDTPIHIAYQHVHGSIPAPSSRVTTVPAELDALVALATSRDPDHRPSDAGDFLTEV
                     RRSRAMLTPTELDRRPEGAAASGGGVNTVAVERTSALPMDRTDPSHRSGRSMPPVALP
                     VEHTPTAPPLGPQEQDERRSAVADWPWRWLLAALAVALLAGLTA"
BASE COUNT          704 a         1655 c         1429 g          647 t
ORIGIN      
        1 ggtgagacta gtcgagcgcg gacaccgtag gctcaagggc agcgaccggt gagacgccgg
       61 tggtggtggc ccgagacgct gtggaggagc gcgtggtgga cagcccgctc gacgccgcgc
      121 agctgcgcga gcgcgttcaa cactgcgtcg acgacttcct ccggcaccag ggcgaggtgc
      181 tcgccgaggt gggtcccgac gcgcaggacc tgctcgcggc ggtcgcccga ctgctgaccg
      241 ggggcaagcg actgcgtgcc gctttcctgt actgggggta ccgggccaca ggtcagccgg
      301 actccctggc cctggtgcgc ctcgccacgg cgatggagtt cttccaggct gctgcgctga
      361 tccacgacga cgtcatggac gacagcgaca tgcgacgggg tatgccggcg gcgcaccgct
      421 ccatcgctgc gcgccacgag cgtgaggcct gggccgggga cgcgggtcgg ttcggggtcg
      481 cgggcgccat cctggccggt gacctgtgcc tcaactggac cgaggagctg tactccacct
      541 cggggctgga gccggcacac ctcgcccggg gacgggccgt gttcgacgtg atgcgcacgc
      601 agctcatggg gggccagttt ctcgatgtcg tcgagtcggc ccgatcctgg gacggggttt
      661 ccacccagga ccagatcgaa cgcgccgagc gggtgatccg ctacaagagc gccaagtaca
      721 ccgtggagca cccgctgctc gtcggcgcca cagccggtgg agccgcggcc gatgacgtct
      781 cagccctgtc gcgatacggg ctggacctgg gtcaggcctt ccagctgcgc gacgacctgc
      841 tcggggtgtt cggcgacccg gcggcgacag gcaagccggc cggggacgat cttcgtgagg
      901 gcaagcgcac cgtgctggtc gcccatgccc tcgccgggac cgacgaggcg ggccgagccc
      961 tcatcgcggg caggctcggc gaccccgggc tgcagaccca cgaggtcgag gcactgcgcg
     1021 tggtcatcgt cgacagtggg gccgtcgacg ctgtcgaagc ggagatcacc cggctcgcgg
     1081 actcggctcg gatggctctc aagtccgcca ccggcttgac ccgcgagggg gtcgaggtcc
     1141 tggacgcctt gatcgacagc tcgaccgcgc gcgtccactg agctcccaaa cgctgagctc
     1201 ccaaccactg agctcccaac caccgggctc ccaaccaccg ggctcccagc caccgggctg
     1261 agtttgcgca accgcctacc aggcggtctc catcgcccgg cgtcgcacct cggtcttgaa
     1321 ccctgccacc agggcatcca caggcgatcc gccgctgggg agactggcgt ccttggtgaa
     1381 catccaccgc aggatctcct cgtcacccat ccccccgtcg gcgagcacgg tgaacgtccc
     1441 cggcagatgg tgcatgacgg cctcgtcgat gaactgagcg ggcaccgaga tgatgcgccg
     1501 ctccccgacc cgagcggcca ggagctcgcg atcgtcgatc atgcgccgga ctgccgacag
     1561 ggcaagccct agtcgctcag cgatgtccgg cacggtgagc caggccccga ccagctcctc
     1621 gagagtgggc tcgcgggtcg agtcattgct ggcggagttc tcagtcacgg caccagcctg
     1681 ccagtcactg caggcaaagc aaattacata gatgtaagtc gatatgaacg tgccctcgtg
     1741 gtgtaccttt cacagaagtc ccaaccgtcg cactgttcac ttcagcaccg tgcatgctct
     1801 ggtcacgaca cggaacaccc gaaaggcaca cgatgtctcc ggtgatcgcc ctcgaagcgc
     1861 tcccctcaac ggtcccccag tcgtttcatg ctgcccgcac ggctgtcgtt catcaggcga
     1921 accccgcgcc acacggctgg gaggtctaca ccgtccgcag cggagacacc ctctccgcga
     1981 tcgcgaccca cgcggcgacc actctcggcg tcctggtcag caagaaccac ctgcccggcg
     2041 gtggcaacca gctcagcgtg ggcgagcgcc tctgggtccc caagtcggct gctcaggcgc
     2101 gcatcgaggc cagccgggcc aagtctgccg ccgcggcccg tgccgccgca cgggccgagg
     2161 ccgtgcggcg cgcgacctat gtcgtccgca gcggcgacac cctgacaggc atcgcccaaa
     2221 gccatggagt ccccctcgcc gccttgctca aagccaatcg actgtccgtg tcggcggtgc
     2281 tccagatcgg ggagaggctg cacctgcccg gagcgggagc ccctgcacgg cccgcggcca
     2341 gccacgccac ccccgcccga ccggcagccg cgcctgccat cagcacctat cgagtccgct
     2401 caggagacac cctcgtggcg atcgcggcgc ggaccaagac gccactgagc agcctctacg
     2461 cctggaacca cctgtccccg atcagcatca tctatcccgg ccaggccatc accgtccggg
     2521 gcgtccccgc gccgcgcgcc gcgaccgccg ccggcacagc cgtcacgacc agctacgtgg
     2581 tgcgcgccgg cgacaccctc agcgcgatcg ccgcccacca tggcgtcacg ctcgctgcct
     2641 tgctcaaggc caaccggatg tcgcctgccg ccgtgctgca gatcggccag aaggttcggg
     2701 tccccggcgc agccaaggcc cgcccgagca gcggcaacac cttcgccgga cgcacctacg
     2761 cgccggccat cgtcgatgcg gccaccgcga accgcaaccg tctggcagga cggaacctcc
     2821 ccaaccgggc ccagacccgc ctcatgatca tcgcgaccgc gcgtcgacac gggctggacc
     2881 cccgcctggc gctggccatc gcctggcagg agtccggctg gagccagcgt gaggtgtcgg
     2941 tcgccaacgc catcggcgtc atgcagatca tcccctcttc ggggcaatgg gcgtcggaca
     3001 tggtcgggcg tccgctgaac ctgctggaca cccaggacaa catcaccgcg ggggtctcga
     3061 tcctgcgcag cctgacccgc tcgaccccgg acctcaagaa ggccatcggc ggctactacc
     3121 agggcctcta ctcggtggaa cacaatggca tgtaccccga cacgaagtcc tacgtcgcct
     3181 cggtgatggc ctaccgggcg cggttctaag tcgcctgatc cagtgccttg tggaggtgcc
     3241 tggcagccct cccccgggcc cgcctgcgca gtttgggtgc tgagacctcc tacactttgc
     3301 aggtgtcttc cggtgtgacc gagtccctcc tcgggcgtgt gatcgacggg cgctaccgcg
     3361 tccagtcgca cattgcggac ggcggaatgg cgtcggtcta cctcgctctg gacacccgac
     3421 tcgatcgcga tgtcgccctt aaggtgctgc gccgcgacct ggcacaagac gacgcgttcg
     3481 tgagcaggtt caagcgtgag gctcgctcag cagcccggct ctcccacccg aacgtcgtca
     3541 gtgtcttcga ccagggcgac gccgacggtc acatgttcct ggccatggag tacgtcccgg
     3601 gacagaccct ccgtgaggtg atgcgcgctg agggaccact cacgccacgc gcagccctcg
     3661 acatcctcgc ccccgtgctc caggcgctgg ccgcagccca caaggccgga atcatccatc
     3721 gggacgtcaa gccggagaac atcatcctgc gcgaggatga cggcaccgtg aaggtcgccg
     3781 acttcggcct cgcccgcgcg gtgaccaccc agacggtgac cgcccagacc ggcgtcctgc
     3841 tcggcactgt ggcatacctc tcgcccgagc aggtcgagcg cggcatcgcc gacgctcgca
     3901 gcgatgtgta tgccgcgggc ctcatcctct tcgagatgct caccgggacg aaggcgttca
     3961 ccggcgacac ccccatccac atcgcctacc agcacgtcca cggctcgata cccgccccgt
     4021 cctcccgggt caccaccgtg ccggccgagc tcgacgcgct ggtggccctg gcgacctccc
     4081 gcgaccccga ccatcgtccg agcgacgcgg gcgacttcct caccgaggtg agacggtcgc
     4141 gcgcgatgct cactcccact gagctcgacc gccgcccaga gggggcagcc gcctccgggg
     4201 gcggggtcaa cactgttgcc gtcgagcgca ccagcgcctt gccgatggac cggacggatc
     4261 cctctcaccg gtcgggccga tcgatgcccc ccgtggccct gcccgtcgaa cacacgccga
     4321 cagctccgcc cctggggccg caggagcagg acgaacgccg cagcgcggta gccgactggc
     4381 cgtggcggtg gctactggct gcgctcgccg tggccctgct cgccggcctg accgc
//
LOCUS       DASYFY010000355         1576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1654810, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000355 DASYFY010000000
VERSION     DASYFY010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1654810"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      18..111
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(138..1001)
                     /locus_tag="VGN19_07155"
     CDS             complement(138..1001)
                     /locus_tag="VGN19_07155"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEV7195700.1"
                     /translation="MPELPEMQALSERLDTLLAGTTLRRADLLGFSSLKTYAPAPDDL
                     KTHRLEHVTRRAKYLVWDFDDGNRIVLHLSQAGRLDIEEPPKKTKPRGAVARFVFGQG
                     DAGLDGPGIGILVREYGTQRKASWWVLAPGDDGPLEGLGPEPGTDEFADFIRTSDSNR
                     QLTTDLRDQRVVSGIGRGWGDDILQRAHLSPFASLRSLKPEQREALITAANDVMAEAL
                     DVERARKGGLSESSLGGRFKVHGKVGEPCPGCGTPLERVSFESYEMAYCPTCQTGGKV
                     LADRRLSRLLK"
     gene            1017..>1576
                     /locus_tag="VGN19_07160"
     CDS             1017..>1576
                     /locus_tag="VGN19_07160"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7195701.1"
                     /translation="MAYTHGHHESVLRSHTWRTAQNSAAYLLPNLAPGLSVLDVGCGP
                     GTITADLALLVAPGEVVGIDASEEVVAQAAEVAGSGGLSNLRFEVGDLFALEYPDESF
                     EVIHLHQVLQHLSDPVEALVSLRRVLAVGGGAGGEGLGLLGVHVGAVGPDAGPVAGAV
                     SGRDGPERPRRMHRAPADGTRPGGRLR"
BASE COUNT          228 a          494 c          591 g          263 t
ORIGIN      
        1 ctcgggtaga tttctctccg tcatccagag gacccgaggg acctggcccc acgacggtcc
       61 ggcaacctgc tgcctggtgc agcaaggtgc caacgccagg atcgatgagg aggagtcccg
      121 tggcgcagcg gcgggtccta cttgagcaag cgcgagaggc gacggtcggc caggaccttg
      181 ccgcccgtct ggcaggtcgg gcagtacgcc atctcgtagg actcgaacga gacgcgctcg
      241 agcggcgtgc cgcaaccggg gcatggctcg ccgacttttc cgtggacttt gaaacggccg
      301 ccgaggctcg attcggaaag cccacccttt cgtgcgcgct cgacatcgag cgcctctgcc
      361 atgacgtcgt tcgccgcggt gatgagggcc tcgcgctgct cgggtttgag ggagcggagc
      421 gaggcgaatg gagagaggtg ggcgcgttgg aggatgtcgt cgccccagcc gcgcccgata
      481 cccgagacga ctctttggtc gcgcaggtcg gtggtcagct gccggttgga gtcgctggtg
      541 cggatgaagt cggcgaactc gtcggtgccc ggctcggggc cgaggccttc gagcggccca
      601 tcgtcgcccg gagccagcac ccaccaggac gccttgcgct gcgtgccgta ctcgcgcacg
      661 aggatgccga tgcccggccc gtcgagcccg gcgtcgccct ggccgaagac gaagcgcgcc
      721 actgcgccgc ggggtttggt cttcttgggt ggctcctcga tgtcgaggcg gccggcctgc
      781 gagaggtgga gcacgatccg attgccgtcg tcgaagtccc acacgaggta cttggcgcgg
      841 cgggtgacgt gctcgaggcg atgcgtcttc aggtcgtcgg gggccggggc ataggtcttg
      901 agcgacgaga agccaaggag gtcggcccgg cggagggtcg tgccggcgag cagggtgtcg
      961 agtcgttcgg acagcgcctg catctcgggc aattcgggca ctgtcacaat gtagcgatgg
     1021 cctatacgca cgggcaccac gaatccgtcc tgcgcagcca cacctggcgg acggcccaga
     1081 actccgccgc atacctgctg cctaacttgg cgcccggtct gtcggtcctc gacgtcggct
     1141 gtggtccagg cacgatcacg gcggacctcg cgctgctcgt cgcaccgggc gaggtcgtcg
     1201 ggatcgacgc gtccgaggag gtggtggcgc aggcggctga agtcgctggg tccggggggt
     1261 tgtcgaacct gcgcttcgag gtcggcgacc tgttcgcatt ggaatacccg gacgagtcgt
     1321 tcgaggtgat ccacctccac caggtgctgc agcatctgag cgatccggtg gaggccctgg
     1381 tgtcgctgcg gcgcgtgctg gcggtcgggg ggggtgctgg cggcgaggga ctcggactac
     1441 tcggcgttca cgtgggcgcc gtcggacccg atgctggacc ggtggctgga gctgtatctg
     1501 gccgtgacgg accggaacgg ccacgacgca tgcatcgggc cccggctgat gggacacgcc
     1561 ctggcggccg gcttcg
//
LOCUS       DASYFY010000356         1688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_604086, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000356 DASYFY010000000
VERSION     DASYFY010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_604086"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VGN19_07165"
     CDS             complement(<1..222)
                     /locus_tag="VGN19_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012397164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEV7195702.1"
                     /translation="MNVESTPASTGLPAGHRGPDGTYVDKGLKGGAIGLLSSVVIGMS
                     STAPAYSLAATLGFVVIAVGVKAPAMMLLA"
     gene            333..1541
                     /locus_tag="VGN19_07170"
     CDS             333..1541
                     /locus_tag="VGN19_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HEV7195703.1"
                     /translation="MRILLVGAGGVGSAIVAIAARREFAEAVVVADYDPARAEKAVAA
                     VGDPRFSAVRADASDEAGIAALLAEHRCDVLVNATDPRFVMPLFRAALSAGATYLDMA
                     MSLSAPHPERPHELPGVKLGDEQFALAEEWAARGQLALVGMGVEPGLSDVFARYAADH
                     LFREIDELGVRDGANLAVRGYAFAPSFSIWTTIEECLNPPVVWEAGRGWFTTPPFSDP
                     EVFDFPEGIGPVECVNVEHEEVLLMPRWVDAKRVTFKYGLGEEFIGVLKTLHMLGLDS
                     TTPVRAGGVEVSPRDVVAACLPDPAELGELMSGKTCAGLWVTGTGLDGQPRQVYLYHV
                     VHNEWSMSEYRSQAVVWQTAVNPVVALELLATGVWQGTGVLGPEAFDAVPFLDLLTAY
                     GSPWGIREGG"
BASE COUNT          249 a          588 c          593 g          258 t
ORIGIN      
        1 cgccagcagc atcatcgccg gggccttgac cccgaccgcg atgacgacga agcccagcgt
       61 cgccgcgagg ctgtaggcgg gggctgtcga ggacatgccg atcaccaccg aggagaggag
      121 cccgatggct ccgcccttca gccccttgtc gacgtacgtg ccgtcgggcc ctcggtgacc
      181 agccggcagg cctgtgctcg caggagtgct ctcgacgttc atcggacggt tatcgcaggc
      241 gatcggactc aatacaaggg tttcagatga taagactgca taccgcaacg aaacccgttg
      301 cagaggcccg gagaacagga cacccgatcg tcatgcgcat ccttctggtc ggcgccggcg
      361 gcgtgggcag cgccatcgtc gcgatcgcgg cacgccgcga gttcgccgag gccgtcgtgg
      421 tggccgacta cgacccggcg cgggccgaga aggcggtggc ggcggtcggc gacccacgtt
      481 tctcggccgt ccgcgccgat gcgtccgacg aggcaggcat cgccgcgctg ctggccgagc
      541 accgctgcga cgtcctggtc aacgccacgg acccgcgctt cgtgatgccg ctgttccggg
      601 ccgctctgag cgctggggcg acgtatctgg acatggccat gtccttgtcc gcgccgcacc
      661 ccgagcgccc gcacgagctg ccgggggtca agctcggcga cgagcagttc gcgctggctg
      721 aggagtgggc ggcacgcggc cagttggccc tcgtcgggat gggcgtggag cccgggctct
      781 ccgacgtctt cgcgcggtac gccgccgacc acctgttccg cgagatcgac gagctcgggg
      841 tgcgcgacgg cgccaacctc gctgtccggg gctacgcgtt cgcgccgtcc ttcagcatct
      901 ggaccaccat cgaggagtgc ctgaacccgc cggtggtgtg ggaggccggc cggggctggt
      961 tcacgacacc tccgttcagc gaccccgagg tgttcgactt cccggagggc atcggccccg
     1021 tcgagtgcgt caacgtggag cacgaagagg tgctcctcat gccgcgctgg gtggatgcga
     1081 aacgggtgac gttcaagtac ggcctggggg aggagttcat cggcgtcctc aagaccctgc
     1141 acatgctcgg cctggattcg acgacgccgg tgcgcgccgg cggggtggag gtctcacctc
     1201 gcgacgtcgt ggcagcctgc ttgcccgacc cggccgaact gggtgagctg atgagcggaa
     1261 agacctgcgc ggggttgtgg gtgaccggca ccggcctcga cgggcaacct cgacaggtct
     1321 acctctacca cgtggtccac aacgagtggt cgatgagcga gtaccgctcc caggcggtcg
     1381 tctggcagac cgccgtcaac ccggtggtcg ccctcgaact gctggccacc ggcgtatggc
     1441 agggcaccgg ggtgctgggg ccggaggcgt tcgacgccgt cccgttcctc gacctgctca
     1501 ccgcctacgg ctccccgtgg ggcatccgcg agggcggctg aaccacgccc ctcgtcctcc
     1561 gcgtcggacc ggacagccag actgcagggc atggagctcc ccgccgccct gtacgagccc
     1621 acggacgacg gcttccaggc caccgcgctg accatcggcc cctgggatcc cggcttccag
     1681 cacgccgg
//
LOCUS       DASYFY010000357         1897 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1549682, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000357 DASYFY010000000
VERSION     DASYFY010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1549682"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1897
                     /locus_tag="VGN19_07175"
     CDS             <1..>1897
                     /locus_tag="VGN19_07175"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009082910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HEV7195704.1"
                     /translation="QRRWLQTHIEIKSNAPNRDEQLHILGRLNAAEALETFLQTKYVG
                     QKRFSLEGAEAVIALLDAVLSQAADQSLDEVVIGMPHRGRLNVLANVLGKSYQKIFGE
                     FEGNIDPGTVQGSGDVKYHLGATGTFTNPFRADARIAVSLASNPSHLETVDPVLEGIV
                     RAKQDMIDKGEQGFTVLPVLLHGDSAFAGQGVVAETLNLSQLRGYRTGGTVHVVVNNQ
                     VGFTTSPAAARSSLYSTDVARMIGAPVFHVNGDDPEACVRVARLAVDYRQAFRKDVVI
                     DLVCYRRRGHNEGDDPSMTQPLMYDIIDRKRSVRKLYTEALVGRGDITLEEAEEALKD
                     YRGQLERAFAETHDAQDSSKPQPVMDPRTPQQSMVQTAITPEALKAIGDAHVSLPQDF
                     TPHPKLQRMLEKRAAMASEGDIDWAMGELLAFGSLLMEGVPVRLAGQDSRRGTFVQRH
                     SVLIDRQTGSEYTPLANLTDDQAKFFVYDSLLSEYAAVGFEYGYSVGNPDAMVLWEAQ
                     FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLLLWAE
                     GSMTVAVPSTPASYFHLLRRHHLDGIRRPLVVFTPKSMLRNKAAVSDLREFTEMKFRS
                     VIEEPTYE"
BASE COUNT          328 a          676 c          615 g          278 t
ORIGIN      
        1 ccagcgacgc tggttgcaga cccacatcga gatcaagagc aacgcgccga atcgggacga
       61 gcagctgcac atcctcggcc gactcaacgc cgccgaggcg ctggagacat tcctgcagac
      121 gaagtacgtg gggcagaagc gcttcagtct ggaaggcgcc gaggctgtca tcgcactgct
      181 cgacgcggtg ctgtcccagg cggctgacca gagcctggac gaggtcgtta tcggcatgcc
      241 gcaccgtggc cggctcaacg tgctcgccaa cgtgctcggc aagagctacc agaagatctt
      301 cggtgagttc gagggcaaca tcgaccccgg cacggtgcag gggtcggggg acgtgaagta
      361 ccacctgggc gccaccggca ccttcaccaa cccgttccgc gccgacgccc gcatcgcggt
      421 ctcgctggcc agcaacccca gccacctgga gaccgtcgac ccggtgctcg agggcatcgt
      481 ccgggccaag caggacatga tcgacaaggg cgagcagggc ttcaccgtgc tgcccgtcct
      541 gctgcacggc gactccgcgt tcgccggtca gggcgtcgtc gccgagacgc tgaacctctc
      601 gcagctgcgc gggtaccgca ccggcggcac cgtgcacgtc gtcgtcaaca accaggtcgg
      661 cttcaccacc agcccggcgg ccgcccggtc gagcctctac tcgaccgacg tcgcccggat
      721 gatcggcgcg cccgtcttcc acgtcaacgg cgacgacccc gaggcctgtg tgcgggtcgc
      781 ccggctcgcg gtcgactacc gccaggcgtt ccgcaaggac gtcgtcatcg acctcgtctg
      841 ctaccgccgg cgcggccaca acgagggcga cgacccctcg atgacccagc ccctgatgta
      901 cgacatcatc gaccgcaagc gctcggtccg gaagctctac accgaggcac tggtcggccg
      961 gggcgacatc accctggaag aggccgagga agccctcaag gactaccgcg ggcagctgga
     1021 acgggcgttc gccgagaccc acgacgcgca ggactcctcg aagccccagc cggtcatgga
     1081 tccgcgcact ccccagcagt cgatggtgca gacggcgatc acgccggagg ccctcaaggc
     1141 gatcggcgac gcgcacgtct ccctgcccca ggacttcacg ccgcacccca agctgcagcg
     1201 gatgctcgag aagcgcgccg ccatggccag cgagggcgac atcgactggg cgatgggcga
     1261 gctcctcgcc ttcggctcgc tgctcatgga aggcgttccc gtccggctgg ccgggcagga
     1321 ttcccgccgg gggacgttcg tgcagcggca ctcggtgctc atcgaccggc agaccggctc
     1381 cgagtacacg ccgctggcca acctcaccga cgaccaggcc aagttcttcg tctatgactc
     1441 gctgctgtcc gagtacgcgg cggtgggctt cgagtacggc tactcggtcg gcaacccgga
     1501 cgcaatggtg ctgtgggagg cgcagttcgg cgacttcgtc aacggggcac agtcgatcat
     1561 cgacgagttc atcagctcgg gcgaggccaa gtggggccag ctctccgacg ttgtgctgct
     1621 gttgccgcac ggccatgagg gccagggccc cgaccacacg tctggccgca tcgagcggtt
     1681 cctgctgctg tgggccgagg gctcgatgac cgtggcggtg ccgtccaccc cggcgagcta
     1741 cttccacctg ctccgccgcc accacctcga cggcattcgc cgcccgctgg tggtgttcac
     1801 gccgaagtcg atgctgcgca acaaggcggc cgtgagcgac ctcagggaat tcaccgagat
     1861 gaagttccgc tcagtcatcg aggaacccac ctacgag
//
LOCUS       DASYFY010000358         2128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1077661, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000358 DASYFY010000000
VERSION     DASYFY010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1077661"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..649
                     /locus_tag="VGN19_07180"
     CDS             65..649
                     /locus_tag="VGN19_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HEV7195705.1"
                     /translation="MDYAPSNRSSASTKIVVAGGFGVGKTTFVGAVSEIDPLRTEALV
                     TQESEGQDDISKVQSKSTTTVAMDFGRITLAENLVLYLFGTPGQRRFWFMWDDLVTGA
                     IGAVVLVDTRRLDDSFAAVDYFEAKGLPFIVALNQFDDAQHFGTEEIREALAIPAHIP
                     VITVDARDRESAKRALVRITEFALTQLSDMATSV"
     gene            complement(717..>2128)
                     /locus_tag="VGN19_07185"
     CDS             complement(717..>2128)
                     /locus_tag="VGN19_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEV7195706.1"
                     /translation="TWASTRYRAPEIVSSDALRAVVGSGEDDLDASADAFAVLDQIVG
                     ARLRRGLTVVVDTLGLDAQRRAAYLGMGRACGMPCVAVLFETPPQVCRERNALRNRSV
                     PAGVLRQQLAKANAVGAALDAEGWDQVLRVPYNSGAEGRTPSTQVSGPVAPPLTQPPH
                     DGYPEVVLHVGRFPWGEDPAAWLTSIARAADDAGFAGLALMDHLIQIPQVDRAWEPIP
                     EPWVTLGLLAGLDTRLRLGTLVSPVTFRQPGVMAKAVATLDVLSGGRAFVGLGAGWWE
                     REHLGFGVPFPPAARRLDQLELTIETMRALWAAGTKAHNGPRAALPETTAYPRPVSQP
                     EIIVGGNGERRTLRIAAELADACNLPSDLGVLDHKVAVLRRHCQDVGRDPDSVAVTVL
                     DLPVIGHNREDTWRRVERLRGRSPAASFAKRHHAGEAAHHQDRYRVLAQRGVRTVFLA
                     LGDLESADDLARVAPLLNS"
BASE COUNT          326 a          756 c          738 g          308 t
ORIGIN      
        1 cgagccacca tctccgaaaa cacgaccacc gacgaacgac gtgaactcat cgaaaggaca
       61 ctcagtggac tacgcgccct ctaaccgcag cagcgcctcg acgaagattg tcgtggcggg
      121 cggcttcggc gtcggcaaga ccaccttcgt tggtgccgtc tccgagatcg atcccctgcg
      181 caccgaggcc ctcgtcaccc aggagtccga gggccaggac gacatctcga aggtccagtc
      241 caagtcgacc accacggtcg ccatggactt cggccgcatc acgttggcag agaacctcgt
      301 gctgtacctg ttcggcacgc ctggccagcg tcggttctgg ttcatgtggg acgacctggt
      361 caccggggct atcggcgcgg tggtgctggt cgacacccgt cggctcgacg actcgttcgc
      421 cgcggtcgac tacttcgagg ccaaggggct gccgttcatc gtggccctca accagttcga
      481 cgacgcccag cacttcggta ccgaggaaat ccgtgaggcc ctggccatcc cggcacacat
      541 cccggtcatc accgtcgacg cccgcgatcg ggagtcggcc aagcgtgccc tcgtccggat
      601 cacggagttc gcgctcaccc agctcagcga tatggccacc tccgtctaga acgacgccca
      661 cagaccgccc ggagcccggc gccctcgagg tgccgggctc cggcgcgcct catccctcag
      721 gagttcagca gcggcgccac gcgggccagg tcgtccgcgg actcgaggtc gccgagggcg
      781 aggaagaccg ttcgcacccc gcgttgggcc aagacccggt aacggtcctg gtggtgagcg
      841 gcctcgccgg cgtggtggcg cttggcgaac gacgcggcgg gcgaccgccc ccgcagccgc
      901 tcgacgcgtc gccacgtgtc ctcccggttg tggccgatca ccgggaggtc gagaacggtg
      961 accgcgacgg agtctgggtc gcggcccacg tcctgacagt gccggcggag caccgcgacc
     1021 ttgtggtcga ggacgcccag gtcgctgggc aggttgcagg cgtccgccag ctccgccgcg
     1081 atgcgcagcg tcctgcgctc gccgttgccg cccacgatga tctctggctg gctcaccggc
     1141 cgggggtatg ccgtggtctc cggcagggcg gcgcgcggcc cgttgtgcgc tttggtgccg
     1201 gcggcccaca gggcacgcat ggtctcgatg gtgagctcca gctggtccaa gcgtcgcgct
     1261 gccgggggaa agggcactcc gaagcccaga tgttcgcgtt cccaccaacc tgcccccagc
     1321 ccgacgaagg cgcgtccgcc ggacagcacg tcgagagtgg ctactgcctt ggccatgacc
     1381 ccgggctgac ggaaggtcac gggggatacc agcgttccga gtcgcaggcg ggtatcgaga
     1441 cccgcgagca gccccaacgt cacccacggc tcggggatcg gctcccaggc ccggtcgacc
     1501 tgcgggatct ggatcagatg gtccatcagc gctagtccgg cgaacccggc gtcgtccgcg
     1561 gcccgggcga tggaggtgag ccacgccgca ggatcctcac cccacgggaa gcggcccacg
     1621 tgcaggacca cttcggggta tccgtcgtgg ggaggctggg tgagcggtgg ggcgaccggt
     1681 ccgctgacct gggttgaagg ggtgcgaccc tccgcccccg agttgtacgg cacgcggagc
     1741 acctggtccc aaccctcggc gtccagggcg gcgccgacgg cgttggcttt cgcgagctgc
     1801 tgtcgcagca ccccggccgg aacggagcgg ttgcgcagcg cgttgcgctc gcggcatacc
     1861 tgcggtgggg tttcgaaaag gactgcgacg caaggcatcc cgcacgcccg gcccatgccg
     1921 aggtaggccg cgcggcgctg cgcgtccagg cccagggtgt cgacgaccac ggtcagccca
     1981 cggcgcagcc gggccccgac gatctggtcg aggacggcga aggcgtcagc cgacgcgtcc
     2041 aggtcgtcct cgccgctgcc cacgacggcc cgcagggcat cggacgacac gatctccggg
     2101 gcgcggtatc gcgtcgacgc ccaggtgg
//
LOCUS       DASYFY010000359         2385 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1602269, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000359 DASYFY010000000
VERSION     DASYFY010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1602269"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /locus_tag="VGN19_07190"
     CDS             complement(<1..432)
                     /locus_tag="VGN19_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEV7195707.1"
                     /translation="MAKQIGVQIDRSSPVPLYHQLAEQLSGAISSGELQPGDAFENEV
                     ALGERLTLSRPTVRRAIQELVDQGLLLRRRGLGTTVAARKVHRRAELTSLYDDLARAD
                     GHPKTQVLGHELVQDERVAAALDLPGDSVFLSVVRLRSSGET"
     gene            599..1603
                     /locus_tag="VGN19_07195"
     CDS             599..1603
                     /locus_tag="VGN19_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEV7195708.1"
                     /translation="MRIGLAGVGRIGAFHAGTLLSLDRVDELLVTDADPDAAKRVANE
                     LGATFVPDADALLAAGIDGFVIATATPGHAPLLRKGVAAGVPTFCEKPVAGTLDETIE
                     LANLAAESTVPVQVGFQRRFDTGYQRARRAVETGELGFLHTIRANTHDQAPPHAAYIP
                     TSGGLFRDCSVHDFDILRYVTGQEVQSVYATGSNKGAAFFAEAGDVDTAGALLTLTDG
                     TLVLVSATRYNGAGHDVRLELHGERGTIGVGLDDSLAMRSAEEGVDFPKGPQRWSFME
                     RFITAYRSELEAFTQVASGEASSACTVGDALEAFRVAEACELSRAQGRPVSLAEVKGV
                     "
     gene            1607..>2385
                     /locus_tag="VGN19_07200"
     CDS             1607..>2385
                     /locus_tag="VGN19_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEV7195709.1"
                     /translation="MTTTSSPQHHIAPAPLSDRIAAAPISWGVCEVPDWGYQLEPGLV
                     LAQMSELGLAATEFGPEGFLPDDPAAKAETLRTYGLAAVGQFVPVVLHDADHDPVPEV
                     DVALDGLVAAGASTVVLSAATGAQGYDARPALDEAGWATLFDNLDRLREVAAARGVVA
                     TLHPHVGTMVESGPEVDRVLAGSGIGLCLDTGHLLIGGGDPVAVARAHPDRIAHVHLK
                     DLRLDWARRVQSGEATYSEAVAGGMYVPLGAGDVDIAAIVSA"
BASE COUNT          360 a          858 c          812 g          355 t
ORIGIN      
        1 cgtctcgccc gaggaccgca gacgcaccac cgacaggaac accgagtcgc cgggaaggtc
       61 gagtgccgcc gcgacgcgct cgtcctggac gagctcgtgc ccgaggacct gggtcttcgg
      121 atggccgtcc gctcgggcga ggtcgtcgta caggctggtc agctcagcac ggcggtgcac
      181 cttgcgggct gcaactgtgg tcccgaggcc ccgccgccgc agcaggagcc cctggtcgac
      241 gagctcctgg atggcgcggc ggaccgtggg tcgcgacaga gtcagacgct cgccgagggc
      301 gacctcgttc tcgaacgcgt caccgggctg cagctcgccg ctgctgatcg caccgctgag
      361 ctgttcggcc agctggtggt acagcggcac aggggaggag cgatcaatct gaacgccgat
      421 ctgcttggcc acgagtgcac tgtagacctc atgtccacat gacgtgggga tcgctcaacg
      481 tgagaatgtc ctaacaaact cttgacacgt ccactcactg gcggcaacct gaacgaggac
      541 agcaaacctg ggggtctgtc ccccaacgcc cccacaacga cgtgaatgga tgaacgcgat
      601 gcggattggt ctcgccggag tcggtcgaat cggtgccttc cacgcaggga cgctgctctc
      661 cctcgaccgg gtcgacgagc tgctcgtgac ggacgccgat cccgacgcgg cgaagcgcgt
      721 cgcgaacgag ctgggcgcga ccttcgtgcc ggatgccgac gccctgctgg ccgccgggat
      781 cgacggcttc gtcatcgcca ccgcgacccc gggtcacgcg ccgctcctgc gcaaaggagt
      841 ggccgccggg gtccccacgt tctgcgagaa gccggttgcc ggcaccctgg acgagaccat
      901 cgagctcgcc aacctcgccg ccgagagcac cgttccggtg caggtgggct tccagcgcag
      961 gttcgacacc ggctaccagc gcgcccgccg cgccgtggag accggtgagc tgggcttcct
     1021 gcacaccatc cgcgcgaaca cccacgacca agcgccgccg cacgcggcat acatccccac
     1081 gtcgggtggg ttgttccgcg actgcagcgt ccacgacttc gacatcctgc gctacgtcac
     1141 cggccaggag gtccagagcg tctacgcgac gggctccaac aagggcgcag ccttcttcgc
     1201 cgaagccggc gatgtggaca ccgcaggggc gctgctcacc ctgacggacg gcaccctcgt
     1261 cctggtctcc gcgacccgct ataacggcgc cggccacgac gtacgcctgg agctccacgg
     1321 cgagcgcggc accatcggcg tcggcctcga cgactcgctg gcgatgcgct ccgccgagga
     1381 gggtgtcgac ttccccaagg gcccccagag gtggtccttc atggagcgct tcatcacggc
     1441 atacaggtcc gagctcgagg cgttcaccca ggtggcgagc ggcgaggcct cctctgcctg
     1501 cacggtgggc gacgcactgg aggcgttccg cgtcgccgag gcctgcgagc tgtcgcgcgc
     1561 ccagggtcgt ccggtgtccc tcgccgaggt caagggggtg tgaccggtga ccacgacgag
     1621 ctctccccag caccacatcg cgccggcgcc cctttctgac cgcatcgccg cagcgccgat
     1681 ctcgtgggga gtgtgcgagg tacccgactg gggctaccag ctcgagcccg ggctcgtgct
     1741 cgcgcagatg tccgagctcg gcctcgccgc gaccgagttc gggccggagg gtttcctgcc
     1801 cgatgacccg gcggccaagg ccgagacgct gaggacctac gggctcgcag ccgtgggcca
     1861 gttcgtacct gtggtccttc atgacgcaga ccacgacccg gtgcccgagg tcgacgtggc
     1921 cctggacgga ctcgtggccg caggcgcctc gaccgtcgtg ctctcagccg cgacgggtgc
     1981 ccagggctac gacgctcgcc ccgccctcga cgaggcaggc tgggccaccc tgttcgacaa
     2041 cctcgacagg ttgcgtgagg tggctgcggc gcgtggagtc gtcgccacgc tgcacccgca
     2101 cgtcggcacc atggtcgaga gcggccccga ggtcgaccgg gtcctggccg gcagcgggat
     2161 cggcctctgt ctggacacgg gtcatctcct catcggtggt ggcgacccgg tggccgtcgc
     2221 gcgcgcccat cccgaccgca tcgcccacgt gcacctcaag gacctgcgac tggactgggc
     2281 gcggcgcgtc cagtccggcg aggcgaccta ctccgaggcc gtggcgggcg gtatgtacgt
     2341 ccccctcggc gcgggtgacg tggacatcgc cgccatcgtg tcggc
//
LOCUS       DASYFY010000360         1858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_761555, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000360 DASYFY010000000
VERSION     DASYFY010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761555"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VGN19_07205"
     CDS             <1..330
                     /locus_tag="VGN19_07205"
                     /inference="COORDINATES: protein motif:HMM:NF022693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3046 domain-containing protein"
                     /protein_id="HEV7195710.1"
                     /translation="RGSRGEAVEHVHCHHWTPSHPVPTPVAVLRAAYTRGVRLSQFWT
                     LMNDEFGEAYASSLARGHVIHALGDRTVLEALEAGESPREVWLALCDDMDVPESRRLG
                     RDVRPRS"
     gene            327..1355
                     /locus_tag="VGN19_07210"
     CDS             327..1355
                     /locus_tag="VGN19_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEV7195711.1"
                     /translation="MSPLDWSAYPLVLAPMAGGPGTVALARAAADGGMFPFLAGAYLS
                     ADRMASDIDALRSATSSPFGVNVFAPSPELPSMQADAETYAARLAPWAEDAGVALGEP
                     RWDDDAFEAKVEVLVQAAPDVASFAFAWPPADAVTRLQAVGTQVWVTLNDPSEGAWAA
                     ELGVDGIVAQGWEAGGHRAGPVDTGDEQPTVRELVGALRDASDLPVMAAGGVTSGADA
                     AELLRLGAVAVALGTAFLACPEAGTAAVHRHALTHRTGTTVTRAFTGRSARALTTTWT
                     ELLSGVAPRAYPHVHHVTAPLRAYGRANGEAELVNLWAGTGHASVRTLPAARLGQLLR
                     DELASEMA"
     gene            1391..>1858
                     /locus_tag="VGN19_07215"
     CDS             1391..>1858
                     /locus_tag="VGN19_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010525725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195712.1"
                     /translation="MTADDQILLSAKGLTKRFGDFTAVDGIDFAVRKGECFGFLGPNG
                     AGKSSTMRMVGCVSPVTDGELRLFGLDPAGNGPAIRARLGNCPQRDTLDEELTVEENL
                     WIYGRYFGLSRHEVRSRAAELLDFAQLTDRAKDRVEPLSGGMKRRLTIARSLIN"
BASE COUNT          260 a          650 c          673 g          275 t
ORIGIN      
        1 cgcggtagcc ggggagaagc ggtcgagcac gttcactgcc atcactggac accctctcac
       61 ccggtgccga cacccgtcgc tgtcctgcgg gccgcctaca ctcgcggggt gcggctgagc
      121 cagttctgga ccctgatgaa cgacgagttc ggcgaggcct atgcgagctc gctggcccgt
      181 gggcacgtca tccacgccct cggcgaccgc acggtgctgg aggcgctgga ggcaggagag
      241 tccccacgtg aggtctggct ggctctgtgc gacgacatgg acgtgccgga gtcccgcagg
      301 ctgggcaggg acgtgaggcc gcgatcatga gcccgctgga ctggtcggca tacccgctcg
      361 tgctcgctcc catggcgggc ggacccggca cggtggcact ggccagggca gcggccgatg
      421 gcggaatgtt tcccttcctg gccggtgcct acctgtccgc cgaccgcatg gcgtcggaca
      481 tcgacgcgct ccgctcggcg acgtcgtcgc cgttcggcgt caacgtgttc gcaccgtctc
      541 ccgagctccc ctcgatgcag gccgatgccg agacgtatgc cgcccggctg gctccgtggg
      601 ccgaggacgc cggggtggcc ctgggcgagc cacgctggga tgacgacgcc ttcgaagcca
      661 aggtggaggt actggtccag gccgctccgg acgtggcaag cttcgcgttc gcatggcctc
      721 cggcggacgc ggtcacgcgc ctccaggccg tggggacgca ggtctgggtc acgctcaacg
      781 atccgagcga gggggcctgg gctgctgagc tgggcgtcga cgggatcgtc gcccagggct
      841 gggaggccgg cgggcaccgg gctggcccgg tggacaccgg cgatgagcag ccgaccgtcc
      901 gcgagctcgt cggggccctg cgcgacgcct ctgacctgcc cgtcatggcc gccggagggg
      961 tgacgagcgg ggccgacgcc gcagagctcc tccggctcgg ggccgtggcc gtggcgctgg
     1021 gcacggcttt cctggcctgt cccgaggcgg ggactgctgc cgtgcacagg cacgccctga
     1081 cccaccgcac gggcacgaca gtcacgcgcg ccttcacggg acgcagtgca cgcgccctca
     1141 ccacgacgtg gaccgagctg ctgagcgggg ttgcgccgcg ggcgtatccc cacgtccacc
     1201 acgtcacggc gccgctgcgt gcctatggca gggcgaacgg cgaggccgag ctcgtcaacc
     1261 tgtgggcagg aacggggcat gcatcggtgc ggacgctgcc ggccgcgcgg ctcggtcagc
     1321 tgctccgtga cgagctcgcc tccgaaatgg cttgaacggc agtcggtcgt tgtcgatagc
     1381 gttgcctcct gtgactgccg acgaccagat cctgctgagc gccaagggcc tgaccaagag
     1441 gttcggcgac ttcacggccg tcgacggcat cgacttcgcc gtccgcaagg gcgagtgctt
     1501 cggcttcctg gggcccaacg gcgccggcaa gtcgtccacg atgcgcatgg tcgggtgcgt
     1561 ctccccggtc accgacggcg agctgcgcct gttcggcctg gacccggccg ggaacggccc
     1621 ggccatccga gcgcgactgg gcaactgccc gcagcgcgac acgctcgacg aagagctcac
     1681 cgtcgaggag aacctctgga tctacggacg ctacttcggg ctgtcgaggc acgaagtgcg
     1741 ctcgcgggct gccgagctgc tggacttcgc ccagctcacc gaccgcgcca aggacagggt
     1801 cgagccgctc tcgggcggca tgaagcggcg gctcacgatc gctcgctccc tcatcaac
//
LOCUS       DASYFY010000361         4294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1760198, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000361 DASYFY010000000
VERSION     DASYFY010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4294
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1760198"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..1248
                     /gene="hisC"
                     /locus_tag="VGN19_07220"
     CDS             157..1248
                     /gene="hisC"
                     /locus_tag="VGN19_07220"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEV7195713.1"
                     /translation="MSDSEVRLRTALDQVPAYVPGKPAAAPEGITAYKVSSNENPYPP
                     LPSVLEVVRDAAGSMNRYPDMAVTELTQALADRLAVPVEHVATGTGSVGVLGQIIQAT
                     CDPGDEVVYAWRSFEAYPIVTALAGATSVQVPLDDLARHRLDAMRAAITDRTKVVIVC
                     TPNNPTGPMVTHTELEQFLDAVPSRVLVVIDEAYVEFVTGHDAPRSLDLYRERPNVMV
                     LRTFSKAYGLAGLRVGYAVAHAPISAALRKTAVPFGVNSIAQAAAVASLKAFDELKER
                     VDALVAERTRVVEALRGQGWFLPDSQANFVWFSVGERSGDFAAAAQNAGLTVRPYGND
                     GVRATIGETEANDVLIRVAGEFLAQNPAS"
     gene            1259..2305
                     /gene="mgrA"
                     /locus_tag="VGN19_07225"
     CDS             1259..2305
                     /gene="mgrA"
                     /locus_tag="VGN19_07225"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047834 - D-threo-aldose 1-dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HEV7195714.1"
                     /translation="MVDTWLPPYLANPGRYGPMPYRKVGQSGLRLPAVSLGLWHNFGD
                     DKPLDVQRAILRRAFDIGITHFDLANNYGPPFGAAEANFGRHFAADFRPYRDELIISS
                     KAGWDMWPGPYGDGGSRKYLIASLDQTLQRTGLDYVDIFYSHRPDPDTPLEETMGALA
                     SIVKQGKALYAGISSYGPELTARAADLLEQMGVPLLIHQPSYSMVNRWVEGGLLDTLG
                     ERGIGCIAFSPLAQGMLTNKYLGGIPEGSRASQGKSLSPDLLTDESLTHVRRLNDLAQ
                     ERGQSLAQMALAWALRDERVTSVLIGASSVDQLEDSAAAVANLRFSDAELEEIDRDAV
                     EAGIDLWRTQSQVS"
     gene            2611..3708
                     /gene="pdhA"
                     /locus_tag="VGN19_07230"
     CDS             2611..3708
                     /gene="pdhA"
                     /locus_tag="VGN19_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HEV7195715.1"
                     /translation="MVQLLTPEGQRVENAEYDEYVKDLTDEDLRGFYRDLVLIRRVDA
                     EATALQRQGELGIWASLLGQEAAQVGSGRAMRSQDYAFPTYREHGVAWCRGVNPLNLL
                     GLFRGVNHGGWDPNEKNFHLYTIVIGAQTLHATGYAMGIQRDGDVGTGDPDRDAAVIA
                     YFGDGASAQGDVNEAFVYAAVNNAPVVFFCQNNQWAISEPNERQTRIPLYQRARGFGF
                     PGVRVDGNDVLAVYAVATQALNAARSGQGPTFVEAYTYRMGAHTTSDDPTKYRVSAEV
                     EVWKHRDPIERLKSYLVHEKKADHDFFEALDREADELAAAVREGCLSMPDPTGDSMFD
                     HVYVEPHPVVEAERKEYAAYHAGFASEGGHA"
     gene            3714..>4294
                     /locus_tag="VGN19_07235"
     CDS             3714..>4294
                     /locus_tag="VGN19_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEV7195716.1"
                     /translation="MTIAKGINNGLRAAMERDPKVVLMGEDIGKLGGVFRVTDGLQKD
                     FGEDRVIDTPLAEAGIVGTAIGMALRGYRPVVEIQFDGFIYPAFDHIVSQVAKMRARS
                     LGKVKLPMVIRIPVGGGIGAVEHHSESNEAYFAHTAGLKVVCCSNAEDAYWMIQQAIE
                     SDDPVLFYEPKRRYWDKGEVDESAAPRELLKAQV"
BASE COUNT          691 a         1529 c         1432 g          642 t
ORIGIN      
        1 agctcaccga gtggctctcg ggtccactcg ggctgtcgtt cacgatccgg cacttcttct
       61 gggacgccgt cctgggcgcg ctggtcatca cgctggtgtc gatggtcctg cactgggtcg
      121 tcccggacga gtgaggccag ccatagagtg gacgccatga gcgacagcga ggtcaggctc
      181 cggacggccc tggaccaggt gccggcgtac gttcccggaa agcccgccgc ggcgcccgag
      241 ggcatcacgg cctacaaggt gtcctccaac gagaacccgt acccgccgct gccctccgtg
      301 ctcgaggtgg tccgcgatgc tgctgggtcg atgaaccgat acccggacat ggccgtcacc
      361 gagctgacgc aagccctcgc ggaccggctc gcggtgccgg tcgagcacgt cgccacgggc
      421 accggttccg tcggcgtcct cggccagatc atccaggcca cctgtgaccc tggcgacgag
      481 gtcgtctacg cctggcggtc cttcgaggcg taccccatcg tcacggcgct cgccggcgcc
      541 acgagtgtcc aggtgcccct ggacgacctc gcacgccacc ggctcgacgc catgcgcgca
      601 gcgatcaccg accgcaccaa ggtcgtcatc gtctgtacgc cgaacaaccc cacgggtccg
      661 atggtgaccc acaccgagct cgagcagttc ctcgatgccg tgccgagtcg ggtcctggtc
      721 gtgatcgacg aggcctatgt cgagttcgtc accgggcacg atgccccccg aagcctcgac
      781 ctctatcggg aacgccccaa cgtcatggtt ctgcggacct tctcgaaggc ctacggcctg
      841 gcggggctgc gcgtcgggta tgccgtggcg cacgccccca tctcggccgc cctgcgtaag
      901 acggcggtgc ccttcggcgt gaactccatc gcccaggcgg ccgcggtcgc ctcgctcaag
      961 gcgttcgacg agctcaagga gcgcgtcgac gccctcgtgg ctgagcgcac cagagtggtc
     1021 gaggcgttgc gcggccaggg ctggttcctc cccgactcgc aggccaactt cgtgtggttc
     1081 tccgtggggg agcgttccgg cgacttcgcg gcagccgccc agaacgccgg actcacggtt
     1141 cgcccgtacg gcaacgacgg cgtgcgagcc acgatcggcg agaccgaggc caacgacgtc
     1201 ctcatccggg tggccggcga gttcctcgcg cagaacccgg cctcctaggc tggtggtcat
     1261 ggtcgacacc tggctgcccc cctatctcgc caacccgggc cgttacggcc cgatgcccta
     1321 ccgcaaggtc ggacagtcgg ggctgcggct tccggcggtc tcgctcgggc tgtggcacaa
     1381 cttcggcgac gacaagccgc tggacgtcca gcgcgcgatc ctgcgccggg ccttcgacat
     1441 cggcatcacc cacttcgacc tggccaacaa ctatggaccg ccgttcggcg ccgccgaggc
     1501 caacttcggc cggcatttcg cggccgactt ccggccctat cgcgacgagc tcatcatcag
     1561 cagcaaggcg ggctgggaca tgtggccggg cccctacggg gacggcggct cgcgcaagta
     1621 cctcatcgcc agcctggacc agaccttgca gcgcaccggc ctggactacg tggacatctt
     1681 ctacagtcac cgcccggacc cggacacccc cctcgaggag acgatggggg ccctggcctc
     1741 gatcgtgaag cagggcaagg cgctgtatgc ggggatctcc agctacggcc ccgagctgac
     1801 cgcccgtgcg gcggacctgc tcgagcagat gggggtcccg ctcctgatcc accagccgtc
     1861 gtactcgatg gtgaaccgct gggtggaggg cggcctgctc gacaccctgg gtgagcgtgg
     1921 catcggctgc atcgcgttca gccccctcgc tcaggggatg ctcacgaaca agtacctcgg
     1981 cggcataccg gaggggtcgc gagccagcca gggcaagtcc ctgtcgccgg acctgctcac
     2041 cgacgagtcg ctcacgcacg tgcgccgcct caacgacctc gcccaggagc gcgggcagtc
     2101 gctggcccag atggcgctgg cctgggcgtt gcgcgacgag cgggtcacct cggtgctcat
     2161 cggcgcgtcc tccgtggacc agctggagga ctcggcggcg gcggtcgcga acctgcggtt
     2221 ctccgacgcc gagctggagg agatcgaccg agatgcggtg gaggcgggca tcgacttgtg
     2281 gcgcacccag tcgcaggtgt cctgaccgcg cagacgtccg gattctgaga tttctccgga
     2341 gccggttatc ttgggcccag caaggcccag atgtgaacgc cgccacacgg cgcgacagac
     2401 tggcggcggt accgcagcgg agaccccgac ggtgaaccgt tgcccgagcc gacgacgccg
     2461 tcacccgcgg cgcctaaggg agaaggagtg cctgtgagcg acaatgcagt cgccagttcc
     2521 ggcagtgcag ccggcaccag tccgcacgag gacgaggtgt tggcggagct gaccgccccg
     2581 gtccccgagg tcggtgacgg cggacccgag atggtccagc tgctcacgcc cgagggtcag
     2641 cgcgtcgaga acgccgagta cgacgagtac gtcaaggacc tcaccgacga agaccttcgg
     2701 ggcttctacc gggacctggt gctgatccgc cgcgtcgacg ctgaggcgac cgcgctgcag
     2761 cgccagggcg agctcggcat ctgggcgtcc ctgctcggcc aggaggctgc gcaggtcggc
     2821 tccggtcgcg cgatgcggtc gcaggactac gccttcccga cctaccgtga gcacggcgtt
     2881 gcctggtgcc gcggggtcaa cccgctcaac ctcctcgggc ttttccgcgg cgtcaaccac
     2941 ggcggctggg acccgaacga gaagaacttc cacctctaca cgatcgtcat cggcgcgcag
     3001 accctgcacg cgaccggcta cgcgatgggc atccagcgcg acggcgacgt gggcacgggc
     3061 gaccccgacc gtgacgcggc agtgatcgcc tacttcggcg acggggccag cgcccagggc
     3121 gacgtcaacg aggcgttcgt ctacgccgcg gtgaacaacg cccccgtggt cttcttctgc
     3181 cagaacaacc agtgggccat ctccgagccc aacgagcgcc agacgcgcat cccgctctac
     3241 cagcgcgcac gcggcttcgg cttccccggc gtgcgggtcg acggcaacga cgtgctcgcg
     3301 gtgtatgccg tggccaccca ggcgctcaac gcggcccggt ccggccaggg ccccacgttc
     3361 gtcgaggcgt acacctaccg catgggcgcc cacacgacct ccgacgaccc gacgaagtac
     3421 cgggtctccg cggaggtcga ggtgtggaag caccgcgacc cgatcgagcg cctcaagtcc
     3481 tacctcgtcc acgagaagaa ggccgaccac gacttcttcg aggccctgga ccgtgaggca
     3541 gacgagctgg ccgccgccgt gcgtgaaggc tgcctgtcga tgcccgaccc caccggcgac
     3601 tccatgttcg accacgtcta cgtcgagccc caccccgtcg tcgaggcgga acgcaaggag
     3661 tacgcggcat accatgccgg cttcgcgagc gaagggggtc acgcgtgagc accatgacca
     3721 ttgccaaggg catcaacaac ggcctgcgcg ccgccatgga gcgcgacccc aaggtcgtcc
     3781 tcatgggtga ggacatcggc aagctcggcg gtgtcttccg ggtcaccgac ggtctgcaga
     3841 aggacttcgg cgaggaccgc gtcatcgaca ccccgctggc cgaggccggc atcgtcggca
     3901 ccgcgatcgg catggcgttg cgtggctacc ggccggtggt ggagatccag ttcgacgggt
     3961 tcatctaccc ggcgttcgac cacatcgtga gccaggtcgc caagatgcgc gcccggtcgc
     4021 tcggcaaggt caagctcccg atggtgatcc gtatcccggt cggcggtggc atcggcgccg
     4081 tcgagcacca ctccgagtcg aacgaggcgt acttcgctca cacggccggc ctcaaggtcg
     4141 tctgctgctc caacgccgag gacgcctact ggatgatcca gcaggccatc gagtccgacg
     4201 acccggtgct gttctacgag cccaagcgcc ggtactggga caagggcgag gtcgacgaga
     4261 gcgcggctcc ccgcgagctg ctcaaggccc aggt
//
LOCUS       DASYFY010000362         1534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_972160, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000362 DASYFY010000000
VERSION     DASYFY010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_972160"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1151)
                     /locus_tag="VGN19_07240"
     CDS             complement(<1..1151)
                     /locus_tag="VGN19_07240"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF020846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S53 family peptidase"
                     /protein_id="HEV7195717.1"
                     /translation="MSSEQRVQIPGSQRVAPSHPRIGEADSGKTIEVTVYLRPSGSLD
                     WVDKAGDASANDRRTISREELASEYGASQEDVDKVRKFAAQYGLDVAETDPARRSVVL
                     RGTVQDVTRAFGAENVGLYEHPKEGRFRGRQGPLTVPSDLGGVITGVFGVDERPQARP
                     QLRKHPQPHQATSYTPPQVAQAYNFPTGVNGSGETVAIIELGGGFTQSELGTYFSGLG
                     VNPPPVIAVGVDGGNNSPGTDQNADGEVMLDIEVVGSVAPGAQIVVYFATNTDQGFID
                     SISTAVHDTTHKPSVISISWGGPEDSWTQQARTQMEQAFTEAAAVGVTVTAASGDNGS
                     TDGVTDGKQHVDFPASAPHALGCGGTSLQIDNGQISDESVWNDGAGGGAG"
BASE COUNT          211 a          552 c          491 g          280 t
ORIGIN      
        1 ccggcgccgc cgccggcccc gtcgttccag accgactcgt ccgagatctg gccgttgtcg
       61 atctgcagcg aggtcccgcc acagcccagc gcgtgcggag ccgaggccgg gaagtcgacg
      121 tgctgcttgc cgtcggtgac cccgtcggtc gacccgttgt cgcccgaggc tgcggtcacg
      181 gtcacgccca ccgccgccgc ctcggtgaac gcctgctcca tctgggtacg ggcctgctgt
      241 gtccacgagt cctccggccc cccccagctg atcgagatca ccgacggctt atgcgtcgtg
      301 tcgtgcacgg cggtcgagat gctgtcgatg aacccctggt cggtgttggt ggcgaagtac
      361 acgacgatct gggctccggg cgcgaccgag cccaccacct cgatgtcgag catcacctcg
      421 ccgtcggcat tctggtcagt gcccggcgag ttattgccgc cgtccacgcc gaccgcgatc
      481 accggcggcg ggttgacccc gagaccgctg aagtaggtgc cgagctctga ctgcgtgaag
      541 ccaccaccga gctcgatgat cgccaccgtc tcacccgaac cattgacccc ggtcgggaag
      601 ttgtaggcct gggccacctg cggcggcgtg taggacgtgg cctggtgcgg ctggggatgc
      661 ttgcgcagtt gcggcctggc ctggggtcgc tcgtcgaccc cgaacacgcc ggtgatcacg
      721 ccgcccaggt cgctgggcac ggtcagcggg ccctggcggc cgcgaaagcg gccctccttc
      781 gggtgctcgt agagcccgac gttctcggcc ccgaaggccc gggtcacgtc ctggacggtg
      841 ccccgcagca cgacgctgcg gcgcgccggg tcggtctcgg cgacgtccag cccgtactgc
      901 gccgcgaact tgcgcacctt gtccacgtcc tcctggctgg ccccgtactc gctggccagc
      961 tcctcgcgcg agatcgtgcg ccggtcgttc gccgaggcgt caccggcctt gtcgacccag
     1021 tcgagcgagc ccgacggacg cagatacacg gtcacctcga tcgtcttgcc gctgtcggcc
     1081 tccccgatcc gcggatggct cggggccact cgctggctgc cgggaatttg tacgcgctgc
     1141 tcagatgaca tcagagattc ctcctggtgt gaatgctcga ggtgatcccg ctgctgactc
     1201 tgattcacga ccgcggcagt tctctggtct ggctgccgtc agtgtcatat gacactgagc
     1261 gggtgcgtgc aggcacgccc catgacagca atcaagcccc gattccgcct ccgtcgcaga
     1321 cccctgcggc cccccgaagt ttgcatgcgt ggccctggtc ggccattgac tttcccctgt
     1381 caggcacccg ccccgttgcc ccgataccgc cgggcgatca ggacgcctgc ccgtacttca
     1441 atcgtacgac atcccccctg tgatgggaag gctttctgtg gcctttaccg ccacctctgc
     1501 aggtgaggcg aagccataag cgttgagtag tttg
//
LOCUS       DASYFY010000363         1938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_552142, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000363 DASYFY010000000
VERSION     DASYFY010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552142"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1348
                     /locus_tag="VGN19_07245"
     CDS             <1..1348
                     /locus_tag="VGN19_07245"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEV7195718.1"
                     /translation="PPADAASAVAPTPAAIAQAVFNRMSEDQRIGQLFMVGGPASGLG
                     SATVAAISGSHVGNLILTGRATSGAAPVRAVTAGADALTSGAATGGVPLLIASDQEGG
                     YVQVLQGPGFSSMPTALVQGTLSDALLTADATTWGRQVRSAGLDVNLAPVMDTVSQPF
                     ARLNAPIGYYQREFGYTPAVVADKGSAFLRGMRSAGLAMTAKHFPGLGRVSGNTDTTS
                     RVVDSVTTRTSADLVPFRAAITAGAPLLMVSSAYYSRIDASRPAVFSPTVITGMIRGD
                     LHFTGIVVSDDLGNAAAVQYWSPGARAVGFLLAGGDLVLSVNPAVVPAMVSAVRARVA
                     TDLAFRARVATSVLRVLTLKAAMGMLAPGLAANGILGPATVIALQRWLGVPNSGWLDQ
                     STIRALQWRVGTIVDGAWGPMSMAALQSYLGTYRDGAGTWNARTVVLLQRYLTTQL"
     gene            complement(1386..>1938)
                     /locus_tag="VGN19_07250"
     CDS             complement(1386..>1938)
                     /locus_tag="VGN19_07250"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEV7195719.1"
                     /translation="AVVPLGLALGDPVALWEGGRRPIPGLRGRIGRAFMFPLVASTLS
                     AAVLTVAFTSGWYAAAQRDEVPWDLLVLAALACGVLVNLPLLSDDLLPQWCGPQLRTL
                     FAFVDGLLDAVPGIVVMTTVEKYSGAALLAVAESVGVPMIFAVLIQWVRSDTAEAAAV
                     DARLDAAEADGTFDTTPWWLRQQ"
BASE COUNT          288 a          712 c          648 g          290 t
ORIGIN      
        1 acctccagcc gacgcggcat ccgccgtggc tccgactccc gcagccatcg cgcaggcggt
       61 cttcaaccgg atgagcgaag accagcgcat cggtcagctg ttcatggtgg gcggtcccgc
      121 gtcgggtctc ggctcagcga cagtggcggc catttcgggg tcccacgtcg gaaacctcat
      181 cctcaccggg cgcgccacgt cgggggccgc gccggtgcgc gcggtcacgg ccggagccga
      241 cgccctcacg agcggggctg cgaccggggg agtcccgctg ctcatcgcct cggaccagga
      301 gggcgggtat gtccaggtcc tgcagggccc tgggttctcg tcgatgccca cagcactggt
      361 ccaaggcacc ctgagtgacg ccctcctcac cgcggacgcg accacctggg gcaggcaggt
      421 tcgctcggcc gggctggacg tcaacctcgc gccggtcatg gacacggtgt cgcagccttt
      481 cgcacgcctg aacgcgccca tcggctacta ccagcgcgag ttcggttaca ccccggcggt
      541 tgtcgcggac aagggctccg ccttcctgcg cgggatgcgg tcggccgggt tggccatgac
      601 tgccaagcac ttcccgggtc tgggtcgggt cagtggcaac acggacacga cctcgcgcgt
      661 ggtcgactcg gtgaccaccc ggacctccgc agacctcgtc ccgttcaggg ccgcgatcac
      721 cgccggggcg cccctcctga tggtctcctc cgcctactac agccgcatcg atgccagccg
      781 tccggccgtc ttctcaccca ccgtcatcac gggcatgatc cgcggcgacc tgcatttcac
      841 cggcatcgtc gtcagtgacg acctgggcaa tgcggccgcc gtgcagtact ggtcgccggg
      901 cgcgcgggcc gtgggtttcc tgctggccgg cggtgacctg gtgctgagcg tcaacccggc
      961 cgtggtcccg gccatggtgt cggccgtgcg cgcccgggtg gccactgatc tcgccttccg
     1021 ggcgcgcgtc gccacgtctg tccttcgggt gctcaccctc aaggcggcca tggggatgct
     1081 ggcaccaggc ttggcagcca acgggatcct cggcccggcg accgtcatcg ccctgcagcg
     1141 ctggctggga gtgcccaaca gcgggtggct ggaccagtcg accatccgtg ccctgcagtg
     1201 gcgcgtcggc accatcgtgg acggggcatg gggccccatg tccatggctg ccctgcagag
     1261 ctacctgggc acctatcgag acggcgctgg cacgtggaac gcccgcaccg tggtgctgct
     1321 ccagcgatac ctcaccaccc agctctaagg cctactcaag ctctgccgtc acggtctcac
     1381 tgcggtcatt gctggcgcag ccaccacggg gtcgtgtcga acgtgccgtc ggcctcggcc
     1441 gcgtccaggc gcgcatccac cgccgctgcc tcggcggtgt ccgagcgaac ccactggatg
     1501 aggacggcaa agatcatcgg gaccccgacg gactctgcga cggcaaggag tgccgcaccg
     1561 ctgtacttct cgaccgtcgt catcacgacg atccccggca cggcgtcgag cagtccgtcg
     1621 acgaaggcga acaacgtccg cagctgaggg ccgcaccact gtggcagcag gtcatccgag
     1681 agcaagggga ggttgaccag aacgccgcac gcgagggcgg ccaacaccag gaggtcccac
     1741 ggcacctcgt cgcgttgggc cgcggcatac cacccgctgg tgaaggccac ggtgagcacc
     1801 gcggcactca gcgtcgaggc caccagcggg aacatgaacg cccggccgat gcgcccgcgc
     1861 agtcctggga taggccgtcg gcccccctcc cacaacgcca cggggtcacc gagggccagc
     1921 cccagcggca cgacggct
//
LOCUS       DASYFY010000364         9380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1445052, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000364 DASYFY010000000
VERSION     DASYFY010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9380
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1445052"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1623)
                     /locus_tag="VGN19_07255"
     CDS             complement(<1..1623)
                     /locus_tag="VGN19_07255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195720.1"
                     /translation="MSVDAAPSLLRSLRIVGVGIRREPRSFSLAVAGSALYGLMTVLT
                     AWAIGKVTREQIQPAVAAGHVTTAQLVTIFSWVAAVVVVNVFGVVIRRIAAGFTMYNV
                     AAGFRQEVTRQYLRLPLSWHHRHPSGQLLSNANADVEATWNVFAPLPMAIGVVVMLVA
                     GIVEMVLVAPVMALIGLTVFPALFVANTVFQRAMSPKVARAQQLRAEVSEVAHESFEA
                     ALVVKAMGREEQEAQRFEVVTRRLQAANVEVGRTRGTFDPVIEAIPTLGTLTVLAVGA
                     QQVASGALTAAAVVQVAYLISVLAFPVRALGWVLGELPRTVVGWDRVDAVLQARGELE
                     FGSRTVPARGASTARLDAVDYSYEVVDEHGATSRFTAIHGVTIEVPAGSTTALVGPTG
                     SGKSTLTNLTLRLVDPDDGTVTLDGIDLREVARGGVPAAATLVPQQTFLFDDTVRGNI
                     TLGSTFGGDDDVWWALGVAQATGFVRDLPHGLDTRVGERGTSLSGGQRQRIALARAII
                     RRPQLLVLDDATSAVDPAIELEILRALRESSSG"
     gene            1694..2338
                     /locus_tag="VGN19_07260"
     CDS             1694..2338
                     /locus_tag="VGN19_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03085 family metal-binding protein"
                     /protein_id="HEV7195721.1"
                     /translation="MTHLARLERDALCATLDAVGPAAPTLCSPWTSADLAAHLVLRDR
                     RPDLTPGIWVPALAARTEQGMRRYAAMPWSDLVDLVRAGPPAWSPARLAAVDDLVNFV
                     EFFVHHEDLLRGNELSGPRRELSARESAGLWKSLSRSARLMFRRSPVGVVLKTPAGAT
                     LTARPATGLGTVVLEGEPAELLLAAYGRRRVAQLEVMGSDEAIDGLWSAPVGLS"
     gene            complement(2385..3158)
                     /gene="hisF"
                     /locus_tag="VGN19_07265"
     CDS             complement(2385..3158)
                     /gene="hisF"
                     /locus_tag="VGN19_07265"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEV7195722.1"
                     /translation="MSVATRVIPCLDVDAGRVVKGVNFANLRDAGDPVALAKAYGEQG
                     ADELTFLDVTASSGNRETTYDVVRRTAEQVFIPLTVGGGVRSADDVDRLLRAGADKVG
                     VNTAAIARPELISEIADRFGSQVLVLSADVRRRRDDSGAPTGQFEVTTHGGRTGTGLD
                     AVQWCARAAELGAGEILLNSMDADGTKDGFDLELIELVRREVHVPLIASGGAGAVAHF
                     APAVRAGADAVLAASVFHFGDLTIGEVKDALRADGVTVR"
     gene            3192..3758
                     /locus_tag="VGN19_07270"
     CDS             3192..3758
                     /locus_tag="VGN19_07270"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7195723.1"
                     /translation="MPADQRTKLVSAVVALVSTSEPRCGSTHLVVLDGPSGAGKTTLA
                     DELASALAAPTVHMDDLYPGWEGLRAGTHRAQEWIVAPLRDGRPARYQRWDWARSEYA
                     EWVQLPSSEVLLLEGCGAGALPVGNAASVLVWVEADETVRRARGIARDPGYAEFWEGW
                     ATQERRLYEADRTWERAHLFVDTSADGP"
     gene            3788..4918
                     /locus_tag="VGN19_07275"
     CDS             3788..4918
                     /locus_tag="VGN19_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEV7195724.1"
                     /translation="MEPAALRSDLARATAWSRTEARDRTRRLVNRLFFIVQCGLGAAT
                     AWFVAADVLHHSRPFFAPVTAMISLGMSFGQRLRRVTEVMIGVAVGVFVGDVFVHFFG
                     SGVWQISLVVVIAMSIASLLGAGLLLTTQAGVQSVIVTTLVAAPGQAFTRWLDAVIGG
                     LVALVFTLVAPAAPLRRPRQQAAAVVRELGAILSDTVTALRDQDADLASAGLVRARAS
                     EHLLDELRALSAEGIAVVRLSPLRRRHLPHVQAIADLVEPLDRAIRNLRVLVRRAAVA
                     TWRNEPVPAAYIELLADLATTVEDIARELQERRLPQNARTGLRRVAELSSTIDPTAGL
                     SGEVMRAQVRSIVVDLLMLTGVTEDEARHQVIDSLATSTEPT"
     gene            4933..6126
                     /locus_tag="VGN19_07280"
     CDS             4933..6126
                     /locus_tag="VGN19_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195725.1"
                     /translation="MSNPRPTLPPVWVLSVALVAVAANLRTAIASVPPLTQAIAGDLG
                     LSHTALGALTTLPVLCMGLFAPLAQRIAARLGAAASVELAVGCVAIGVALRFAGGHVW
                     ALYAGTFVAGVGIALGGTLLPGLVKALFPPQRSGLVTGLYMLAMMSGAAASSALAVPL
                     QGWLGSWEAALGSWSILAVVGALAWLPVVAGHARHRTANPVPVTSVRLPWGHLTAWLV
                     AAYLTVQSVGFYSTLAWLAPSYTARGWDPTHAGYLLSAFTAAQLVSGLLAPALTDRIT
                     DHRLLLLAASLLGAVGQAGLWLGPTVAPWEWAVVLGFGQGASFALGLVLMVDYADSPA
                     ASARLAGLAFFVSYTLASFGPATLGALRDATGGFTAVWMTLTLLTIVQLALAVLLRPG
                     LRKVA"
     gene            complement(6154..6684)
                     /locus_tag="VGN19_07285"
     CDS             complement(6154..6684)
                     /locus_tag="VGN19_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEV7195726.1"
                     /translation="MPALSEMSPRHPHRPADQTPDEHTAFAPFHPRRGRSVALVSAVL
                     SLVVFGVIALFLPGPAQAGNWQVGDRVFFAGLGVAMALLLWRYASIRAIPTRETLTVR
                     NLFTTRVVSWQSVVDLHFGGGDPWLSIDLDDTDVLAVMAIQKADGDFARAEARRLVAL
                     VQALGPSAASPEVTLD"
     gene            complement(6672..7517)
                     /gene="hisG"
                     /locus_tag="VGN19_07290"
     CDS             complement(6672..7517)
                     /gene="hisG"
                     /locus_tag="VGN19_07290"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEV7195727.1"
                     /translation="MLRIAVPNKGSLSEPAVEMLRESGYRVRRDTKELVVTDADNDVE
                     FFYLRPRDIAVYVGSGTVDCGITGRDLLLDSGSAAIEVMTLGFGASTFRYAAKPGTCA
                     RVEEIAGHRVATSYPGLVEKHLAEQGVAAQVVRLDGAVETAITLGVADVIADVVETGT
                     TLRNQGLEVFGDPILRSEAVLIRQEGSHETAAVDVLRRRLTGVITARHYVMLDYDVPV
                     SLVEQACAVTPGLESPTVSELQNKQWAAVRAMVPRARTNAIMDELYDLGARAILVTDI
                     AACRL"
     gene            complement(7534..7797)
                     /locus_tag="VGN19_07295"
     CDS             complement(7534..7797)
                     /locus_tag="VGN19_07295"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017539721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEV7195728.1"
                     /translation="MKTFDALYAELAEKAVSRPEGSGTVRALDAGVHGIGKKVVEEAA
                     EVWMAAEHEGKDRAAEEISQLLYHLQVLMLACDISLDDVYAHL"
     gene            complement(7794..8279)
                     /gene="ribH"
                     /locus_tag="VGN19_07300"
     CDS             complement(7794..8279)
                     /gene="ribH"
                     /locus_tag="VGN19_07300"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019137143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEV7195729.1"
                     /translation="MSGHGAPVVQVDGSGLRVAVVAASWHTDVMDGLVAGAQRALAES
                     GLADAPVVRVPGTVELTVACARLAPAYDALVALGVVIRGGTPHFDYVCSGVTNGLAQV
                     SATTGCPIGFGVLTCDDDAQALDRAGLPGSSEDKGHEAAMAAVATAVTLGALAPRTLG
                     T"
     gene            complement(8276..>9380)
                     /gene="ribA"
                     /locus_tag="VGN19_07305"
     CDS             complement(8276..>9380)
                     /gene="ribA"
                     /locus_tag="VGN19_07305"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEV7195730.1"
                     /translation="TDDWMAWTIRHSSGYICVPVTDATADRLGLPLMVSENRDPLRTA
                     YTVSVDAAAGVTTGISAADRALTIRLLADPTATPDSFIRPGHVIPLRAKGGGVLERAG
                     HTEAAVDLCRLAGLAPVAAIGELVNDDGTMMRLPEVVSMGTQYDVPVVTIAQLIAWRQ
                     RHDRVERLAETTLPTKYGRFATYAYRDRLNGDEHLALVSPAGFGAPVPLVRLHSECLT
                     GDAFGSLRCDCGPQLERSLERIAAEGGVVVYLRGHEGRGVGLVSKLQAYALQDQGLDT
                     VDAQLELDLPVDAREYAAGAAILTDLGVSAVRLLTNNPAKVQAMRDSGVEVAAVERLS
                     VAATPTNRGYLRTKRDRMGHDLLLDALDAGETA"
BASE COUNT         1308 a         3367 c         3291 g         1414 t
ORIGIN      
        1 gccactgctg gactcgcgca gggcgcgcag gatctccagc tcgatggcgg ggtcgacggc
       61 gctcgtcgcg tcgtcgagca ccagcagctg cgggcgccgg atgatggctc tggccaaggc
      121 gatccgttga cgctgaccgc ccgacaacga ggtgccacgc tcccccacgc gggtgtccag
      181 cccgtgcgga aggtcgcgga cgaaccccgt cgcctgggcg actccgaggg cccaccagac
      241 gtcgtcgtcg ccaccgaacg tgctgcccag ggtgatgttg ccgcgcactg tgtcgtcgaa
      301 gaggaacgtc tgctggggca ccagggtggc ggccgcgggc acgccaccac gggcgacctc
      361 gcgcaggtcg atcccgtcca gggtgacggt gccgtcgtcc gggtcgacca gacgcagggt
      421 caggttcgtc agggtcgact tgcctgagcc cgtggggccg accaacgccg tggtcgaccc
      481 ggccggtacc tcgatggtga ccccgtggat cgcggtgaac ctcgacgtcg cgccgtgctc
      541 gtcgacgacc tcgtaggagt agtcgacggc gtcgagccga gcggtggacg cacctcgggc
      601 gggcaccgtc cgggacccga actccagctc ccctcgggcc tggagcaccg cgtcgacgcg
      661 gtcccagccc accacggtgc gtggcagctc gccgaggacc catcccagcg cccggactgg
      721 gaacgccaac accgagatca ggtacgccac ctgcacgacc gccgccgccg tcagagcgcc
      781 cgaggcgacc tgctgcgccc cgacggcgag gacggtcagc gtgcccagcg tcgggatggc
      841 ctcgatgacg ggatcgaacg tgccccgagt gcggcccacc tcgacgttgg cggcctgcaa
      901 ccggcgagtg accacctcga accgctgggc ctcctgctcc tcgcgtccca tcgccttgac
      961 caccagggcc gcctcgaagc tctcgtgggc gacctcgctg acctcggcgc gcagctgctg
     1021 ggcccgggcc accttgggcg acatcgcccg ctggaacacc gtgttggcca cgaagagcgc
     1081 gggaaagacg gtcagtccga tgagcgccat caccggtgcg acgaggacca tctccacgat
     1141 gcccgcgacc agcatgacga ccacgccgat cgccatgggc agcggcgcga acacgttcca
     1201 ggtggcttcg acgtcggcgt tggcgttcga gagcagctgg cccgaggggt gccggtggtg
     1261 ccaggacagc ggcagccgca ggtactgccg ggtgacctcc tggcggaaac cggcggccac
     1321 gttgtacatg gtgaagccgg ccgcgatccg gcggatcacg acgccgaaga cgttgacgac
     1381 cacgacggca gcaacccagc tgaagatggt caccagctgg gcggtcgtca cgtgcccggc
     1441 tgcgacggca ggctggatct gttcgcgggt gaccttgccg atggcccagg cggtcaacac
     1501 cgtcatcaag ccgtacagcg cactgccggc cacggccagg gagaaggagc gcggttcccg
     1561 tcggatgccc accccgacga tccgcaggct gcgcagcagg ctgggagcgg cgtcgacgga
     1621 cacggcgaac ctccgagcta cgtgcggatg ggcgggtctc caaccctctc acgcggggag
     1681 catgatggct gccatgaccc accttgctcg ccttgagcgc gacgccctct gcgccaccct
     1741 ggacgctgtc ggtccggccg cgcccacgct gtgctcaccc tggacgtccg ccgacctcgc
     1801 cgcgcacctc gtgctgcgcg accgacgccc ggacctgacc cccggcatct gggtgccggc
     1861 gttggctgcc aggaccgagc agggcatgcg caggtatgcc gcgatgccgt ggagcgacct
     1921 cgtggacctc gtgcgtgcgg gtcccccggc gtggtcgccg gcccggctcg ccgcggtgga
     1981 cgacctggtg aacttcgtgg agttcttcgt ccaccacgag gacctcctgc gcgggaacga
     2041 gctgtccgga ccgcggcgtg agctttccgc gcgtgagtcc gctgggttgt ggaagtcgct
     2101 ctcgcgcagt gcccggctga tgtttcgacg cagcccggtc ggcgtggtcc tcaagacgcc
     2161 ggccggcgcc accctcacag ctcgccccgc gaccgggctg ggcactgtcg tcctggaggg
     2221 cgagccggct gagctgctgc tcgccgccta cggtcggcgt cgggtcgccc agctggaggt
     2281 catgggcagc gacgaggcga tcgacgggct ctggtccgcg ccggtagggc tgtcctgagc
     2341 gactcgacga ggccccaaac tgctcagctg ctcagctgct ctgctcagcg aacggtgact
     2401 ccgtcagcgc gcagcgcgtc cttgacctca ccgatcgtga ggtcgccgaa gtggaagacg
     2461 ctggccgcga gcacggcgtc ggctcctgcc cgcaccgcgg gcgcgaagtg ggcgaccgcg
     2521 cccgccccac cgctggcgat caacgggacg tgaacctctc ggcggaccag ctcgatcagc
     2581 tcgaggtcga agccgtcctt ggtgccgtcg gcatccatgg agttgagcag gatctcgccg
     2641 gctcccagct cggccgcccg cgcgcaccac tgcaccgcgt ccaggccggt gccggtgcga
     2701 ccaccatggg tggtcacctc gaactgtccg gtcggggccc ctgagtcgtc gcggcgacgt
     2761 cgcacgtcgg cggacaggac gaggacctgg gagccgaagc ggtcggcgat ctcactgatc
     2821 agctcggggc gggcgatggc cgccgtgttg acgccgacct tgtccgcccc cgcacgcagg
     2881 agtcggtcca cgtcgtcggc actgcgcacc ccaccgccca ccgtcagcgg gatgaagacc
     2941 tgttcggcgg tccgccgcac gacgtcgtag gtcgtctcac ggttcccgct gctggcggtc
     3001 acatcgagga aggtcagctc gtccgcccct tgctcgccgt acgccttcgc gagcgcgacg
     3061 gggtcgccgg catcgcgcag gttcgcgaag ttgacgccct tgacgacgcg gccggcgtcg
     3121 acgtcgaggc acgggatcac tcgggtggcc acggacacaa gggaatcgta accaccccta
     3181 gggtggggcc catgccggct gaccagagga caaagctcgt gtcagccgtc gtggcactgg
     3241 tcagtaccag cgaacctcgt tgcggctcaa cgcatctcgt ggtcctcgac ggcccgagcg
     3301 gcgcgggcaa gaccacgttg gccgacgagc tggcctccgc tctcgccgcc ccgacggtgc
     3361 acatggacga cctctacccc ggctgggagg gcctgcgcgc cggcacccat cgggcgcagg
     3421 agtggatcgt cgcccccctg cgtgacgggc ggcccgcccg ctaccagcga tgggactggg
     3481 cccgcagtga gtatgccgag tgggtccagc tcccgtcctc ggaggttctg ctgctcgagg
     3541 ggtgcggcgc cggtgccctt cctgtcggca acgccgcctc ggtgctggtc tgggtcgagg
     3601 ccgacgagac ggtccgccgc gcgaggggga tcgcccggga tccggggtat gccgagttct
     3661 gggaggggtg ggcgacccag gagcgcaggc tttacgaagc ggatcgcacg tgggagcgcg
     3721 cgcacctgtt cgtcgacacc agcgccgacg ggccgtgaag cgcagcatcc ccggcgataa
     3781 tcgacgcatg gaacccgctg ctctcaggag cgacctcgcc cgcgccaccg cttggtcgcg
     3841 caccgaggct cgggaccgga ctcggcggct cgtcaaccgc ctgttcttca tcgtccagtg
     3901 tggtctgggc gccgcgaccg cctggttcgt ggccgccgac gtgctgcacc acagccggcc
     3961 gttcttcgca cccgtcaccg cgatgatctc gctcgggatg tcgttcgggc agcggctgcg
     4021 aagagtcacc gaggtcatga tcggcgtagc cgtgggcgtc ttcgtcgggg acgtcttcgt
     4081 gcacttcttc ggctccggcg tgtggcagat ctcgctcgtc gtcgtcatcg ccatgagcat
     4141 cgcctcgctg ctgggagcag gactgctgtt gaccacccag gccggcgtcc agtcggtcat
     4201 cgtgaccacc ctcgtggccg cgcccggcca agccttcacc cgctggctcg acgccgtcat
     4261 cggggggctg gtggccttgg tcttcaccct ggtggcgcca gccgctcccc tgcggcgccc
     4321 gcgtcagcaa gccgccgcag tcgtgcggga gctcggcgcc atcctctccg acaccgtgac
     4381 ggcgctgcgc gaccaggacg ccgacctggc ctcggccggc ctggtgcgcg cgcgtgcctc
     4441 cgaacacctc ctcgacgagc tgcgggcgct gtccgccgag gggatcgccg tggtgcggtt
     4501 gtcgccgctg cgtcgccgtc atctgccaca cgtgcaggcc atcgccgatc tggtcgagcc
     4561 gctcgaccga gccatccgca accttcgcgt gctggtccgt cgagcggccg tggcgacctg
     4621 gcgcaacgag cccgtgcccg cggcatacat cgagctgttg gcggacctgg ccaccacggt
     4681 ggaggacatc gctcgcgagc tgcaggagcg gcggctgccg cagaacgccc gcacggggct
     4741 gcgccgcgtg gccgagctca gctcgacgat cgacccgacc gccgggctgt ccggcgaggt
     4801 gatgcgcgcg caggtgcgct ccatcgtggt ggacctgctc atgctcaccg gggtcaccga
     4861 ggacgaagcg cgtcatcagg tgatcgactc cctcgccacg tcgaccgaac ccacctgaca
     4921 gactccactg cgatgtcgaa ccctcgcccc accctgccac ccgtctgggt cctcagcgtc
     4981 gcgctcgtgg ccgtcgccgc caacctgcgc accgcgatcg ccagcgtccc cccactgacg
     5041 caagccatcg ccggagacct gggcctgtca cacaccgccc tcggcgcgct gaccacgctg
     5101 cccgtcctgt gtatggggct gttcgccccg ctcgcccagc ggatcgccgc ccggctcggt
     5161 gcggcggcgt cggtcgagct ggccgtcggc tgtgtcgcga tcggggtcgc gctgcggttc
     5221 gcgggcggcc acgtctgggc cctgtatgcc gggacgttcg tggccggggt cggtatcgcc
     5281 ctgggcggca cgctcttgcc gggtctggtc aaggcgctgt ttccgccgca gcgatcgggg
     5341 ctggtgaccg gcctctacat gctggcgatg atgagcggcg cggcggcctc ctcggccctc
     5401 gccgtcccgc tccagggctg gctgggatcg tgggaggccg cgctggggtc atggtcgatc
     5461 ctcgccgtcg tgggggccct ggcgtggttg cccgtggttg ccggccacgc gcgccaccgc
     5521 acggccaacc ccgttcccgt gacctcggtc cggctgccct ggggccacct gacggcgtgg
     5581 ctggtcgccg cctacctgac ggtgcagtca gtcgggttct actcgacgct ggcctggctc
     5641 gcgccgtcgt acacggctcg cggctgggat cccacccacg cggggtatct gctgtccgcc
     5701 ttcaccgcgg cccagctggt gtcggggctg ctggcccccg ccttgaccga ccgcatcacc
     5761 gaccaccggc tccttctgtt ggcagcgtcg ctgctgggcg cggtcgggca agccggcctg
     5821 tggctcggac cgacggtggc tccgtgggag tgggctgtgg tactcgggtt cggacagggg
     5881 gcgtcgttcg ccctgggcct ggtcctgatg gtcgactacg ccgacagtcc ggcagccagc
     5941 gctcggctcg cgggtctggc gttcttcgtg agctacaccc tggcctcgtt cggtccggcg
     6001 acgttgggcg cgctgcgcga cgccactggg ggcttcaccg ccgtctggat gaccctgacg
     6061 ctgttgacga tcgtccagct ggcgctcgcg gtgctgcttc gccctggcct gcgaaaagtc
     6121 gcctagaccc tcagaagggt tggccgaccc ccgtcagtcg agggtgacct ctgggctggc
     6181 ggccgacggc ccgagcgcct ggaccagtgc gaccagccgt cgcgcctcgg cacgggcgaa
     6241 gtcgccatcg gccttctgga tggccatgac ggccagcacg tcggtgtcgt cgaggtcgat
     6301 gctcagccac gggtcgcctc cgccgaagtg caggtcgacc acgctctgcc agctgaccac
     6361 gcgagtggtg aagaggttcc ggacagtcag ggtctcgcgc gtggggatgg cccggatgga
     6421 ggcgtagcgc cacagcagaa gggccatggc gaccccgagt cccgcgaaga acacccggtc
     6481 accgacctgc cagttgcccg cctgagccgg accgggcaga aacagtgcga tgacgccgaa
     6541 cacgacaagg gacagcaccg ccgagaccag ggccaccgag cgaccccggc gcgggtggaa
     6601 cggcgcgaac gccgtgtgtt cgtcgggggt ctggtccgcc ggccgatgcg ggtggcgcgg
     6661 ggacatctcg ctcagagccg gcacgcggcg atgtcggtga ccaggatcgc ccgggcgccc
     6721 aggtcgtaca gctcgtccat gatcgcgttg gtccgggcgc gagggaccat cgcccggact
     6781 gcggcccact gcttgttctg cagctcggac acggtgggcg actcgagtcc cggcgtgacc
     6841 gcgcaggcct gctcgaccag ggacaccggc acgtcgtagt cgagcatcac gtagtgccgc
     6901 gccgtgatga ctccggtgag ccgtcgtcgc agcacgtcga cggccgccgt ctcgtgcgag
     6961 ccctcttgcc ggatcaacac cgcttcgctg cgcaggatgg ggtctccgaa cacctcgaga
     7021 ccctggttgc gcagcgtcgt cccggtctcg accacgtcgg cgatgacgtc ggccacgccc
     7081 aaggtgatcg ccgtctcgac cgcgccgtcg agacgcacga cctgtgccgc gacaccctgc
     7141 tcggccagat gcttctccac cagaccgggg tagctggtgg ccacccgatg tccggcgatc
     7201 tcctcgacgc gggcgcaggt cccaggcttg gcggcatacc ggaaggtgga cgcgccgaag
     7261 ccgagcgtca tcacctcgat cgccgcgctg cctgagtcga gcagcaggtc gcggccggtg
     7321 atgccgcagt ccaccgtgcc ggaaccgaca tagacggcga tgtcgcgcgg gcgcagatag
     7381 aagaactcga cgtcgttgtc ggcgtcggtg accacgagct ccttggtgtc gcggcgcacc
     7441 cggtagccgg actcgcgcag catctcgacg gccggctcgg acagggatcc cttgttgggg
     7501 acggcaatac gaagcatcgt gcggtctccg gctttagagg tgggcgtaca cgtcgtcgag
     7561 cgagatgtcg cacgcgagca tgaggacctg caggtggtac aacagctggc tgatctcttc
     7621 ggcggcccgg tccttgccct cgtgctcggc cgccatccag acctcggcag cctcctcgac
     7681 gaccttcttg ccgatgccat gcacgcccgc gtccagcgcg cgcacggtgc ccgacccctc
     7741 ggggcggctc accgccttct cggccagctc ggcatacagc gcgtcgaaag tcttcacgtg
     7801 ccaagggtac ggggagccag cgcgcccaag gtgaccgcgg tcgcgacggc cgccatcgcc
     7861 gcctcgtgac ccttgtcctc gctcgaacca ggcagtccgg ctcggtcgag cgcctgggcg
     7921 tcgtcgtcgc aggtgagcac gccgaagccg atcgggcatc cggtcgtcgc gctgacctga
     7981 gccagcccgt tggtgacgcc cgagcacaca tagtcgaagt gcggggtacc accccggatc
     8041 accaccccga gagccaccaa ggcgtcgtat gccggcgcga gccgcgcgca ggcgaccgtc
     8101 agctcgacgg tgcctggcac ccgcacgacc ggagcgtcgg ccagccccga ctccgcgagg
     8161 gcgcgctgcg cacctgcgac gagcccgtcc atgacgtcgg tgtgccagga cgcggcgacc
     8221 acggccacgc gtagccccga gccatccacc tggaccaccg gggcgccgtg tccgctcacg
     8281 ccgtctcccc cgcgtcaagg gcgtcaagga gcaagtcgtg gcccatccgg tcgcgcttgg
     8341 tccgcaggta cccgcggttg gtgggcgtgg ccgccaccga gagtcgctcc acggcggcaa
     8401 cctcgacgcc gctgtcccgc atggcctgca ccttggcggg gttgttggtc agcagccgca
     8461 ccgcgctcac gccgagatcg gtgaggatcg cggcgccggc ggcatattcg cgggcatcga
     8521 cgggcaggtc gagctcgagc tgcgcgtcca cggtgtcgag gccctggtcc tgcagggcat
     8581 aagcctggag cttggacacc agcccgaccc cccggccctc gtgaccgcgc aggtacacca
     8641 cgaccccgcc ctcggccgcg atacgttcca gcgaccgctc gagctggggg ccgcagtcgc
     8701 agcgcaggga accgaaggcg tccccggtca ggcactccga gtgcagccgc acgaggggga
     8761 cgggggcacc gaagccggcc gggctgacca gggccaggtg ctcgtcaccg ttgagccggt
     8821 cgcggtaggc gtacgtggcg aacctgccgt acttcgtggg caacgtggtc tcggccagcc
     8881 gctcgacgcg gtcgtgacgc tgacgccagg cgatgagctg ggcgatggtc acgaccggaa
     8941 cgtcgtactg cgtccccatc gacacgacct ccggcaggcg catcatggtg ccgtcgtcgt
     9001 tgaccagctc gccgatggcc gccacgggtg cgaggccggc gaggcggcac aggtcgacgg
     9061 cggcctcggt gtgccccgcg cgctccagca cgccaccacc cttggcacgc aacggaatca
     9121 cgtgtccggg acggatgaag gagtccggcg tagccgtcgg gtcggcgagc agccggatgg
     9181 ttagcgcgcg gtccgctgca ctgatgcccg tggtcacgcc ggcggcggcg tccacgctga
     9241 ccgtgtaggc cgtccgcagc ggatcgcggt tctccgacac catgagcgga agtcccagcc
     9301 ggtcggcggt ggcatcggtc accggcacgc agatgtagcc actggaatgg cggatcgtcc
     9361 aggccatcca gtcgtcggtg
//
LOCUS       DASYFY010000365         4190 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1078111, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000365 DASYFY010000000
VERSION     DASYFY010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4190
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1078111"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..774)
                     /locus_tag="VGN19_07310"
     CDS             complement(<1..774)
                     /locus_tag="VGN19_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7195731.1"
                     /translation="MSRLQQTDGLTDEQQELLKLVREFVDEQIIPVAQELEHADEYPT
                     KIVEGMKEMGIFGLMIPEEYGGLGESLLTYALCVEEIARGWMSVSGIINTHFIVAYML
                     LQHGTEEQKQRYLPRMATGEIRGAFSMSEPGLGSDVSAIKSKAVKGDGVGDQTEWSLT
                     GQKMWLTNGGSANLVAVLVKTDLGADSVYRNMTTFLVEKEPGFGETAQGVTVPGKIEK
                     MGYKGVDTTELILEGHQTTSAQILGGEPGQGFYQMMDGVE"
     gene            928..1773
                     /locus_tag="VGN19_07315"
     CDS             928..1773
                     /locus_tag="VGN19_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HEV7195732.1"
                     /translation="MHLVPDTEHTSFSFDSRPDAPPEGERWSSWDGATHGPGPRPDWV
                     VTELGAVEADLGVLKTGKEADVHAVRRWVPDGTSNPARDSLLAAKRYRSSEHRMFHRD
                     AGYQEGRRVRRSREMRAMARRTEFGRELLSGQWAVAEFAALGTLWELGLPVPYPVQLN
                     DREMLMEFIGDDGVAAPRLAQTRPEPTLLVDLFEQLRSTLTCLAAQGWAHGDLSPYNV
                     LLHRDSLVVIDWPQVVDIIGNPRGFEFLERDVANMCRWFTSKGLAVDADELMADLVAA
                     ATARW"
     gene            1812..2639
                     /locus_tag="VGN19_07320"
     CDS             1812..2639
                     /locus_tag="VGN19_07320"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7195733.1"
                     /translation="MSTKASSRATVSRRGVLQGAAATVVLGVSGCGGANAPAGVVRRS
                     GTFRSRHWPGQDVGWQLALPSSHPAKTTPVVIALHGRGGAAGDAFDSLHLDQHVREAG
                     LAVVSVDGGDYYWHARRVGIDPGAMVVDDLLPLLVRQTGYAGKVAFLGWSMGGYGSLL
                     LASQLGPSRVAAVVAESAALWTAPGLSAPGAFDDRADFVAHDVFKRTAVLSRIPVRLD
                     CGSSDPFVPGNRAFAAALPSARLRFDPGGHTNDFWSSHAAAQLRWIRQQFDAQRVFQ"
     gene            complement(2633..3538)
                     /locus_tag="VGN19_07325"
     CDS             complement(2633..3538)
                     /locus_tag="VGN19_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEV7195734.1"
                     /translation="MRSRGASGGAGLVLTRLGLSLAVAATALGGCGLLPSSHASAHAV
                     GSPATLASGAPTPSSKPRATPTPSKIVPTPSKVVSTPSKIVPTPSKIVPTPTPSPTAK
                     KLGDTLQAGDSGAYVRTVQQRLSDLGYWNGVPDGNFGQLTEQAVMALQKAAGLGRDGV
                     FGPSTRHALEVGVRPTSRVGGDGVEIDKALQLLLVVRGGHVTTILNTSTGSGQHYSYQ
                     GVDAVALTPSGTFAVFRTVDHLDKGPLGDLWRPRYFNGGIAVHGAAAIPGYPASHGCA
                     RVSDAAMDMIWAQGLMPVGSRVVVY"
     gene            3610..>4190
                     /locus_tag="VGN19_07330"
     CDS             3610..>4190
                     /locus_tag="VGN19_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEV7195735.1"
                     /translation="MAGLLVTGTSSDAGKSLVVTALCRAFARRGIDVAPFKAQNMSNN
                     SMVCRDGSEIGRAQYLQCQAAGVEASSVHNPVLLKPGSDRRAFVVVRGKPAGELQAGE
                     YATGRVHLAHAAFAAYEELSASTDLVVSEGAGSPAEVNLRKGDYVNLGLARRFDLPVL
                     LVGDIDRGGVLAALFGTWALLDEDDRALLKAFA"
BASE COUNT          620 a         1479 c         1375 g          716 t
ORIGIN      
        1 ctcgacgccg tccatcatct ggtagaagcc ctggcccggc tcaccgccga ggatctgggc
       61 gctggtcgtc tggtggccct cgaggatgag ctcggtggtg tcgacgccct tgtagcccat
      121 cttctcgatc ttgcccggca cggtgacgcc ctgcgccgtc tcgccgaagc caggctcctt
      181 ctcgaccaga aacgtcgtca tgttccggta caccgagtcc gcgccaaggt ccgtcttgac
      241 gagcaccgcc accaggttcg cgctgccacc gttggtcagc cacatcttct gaccggtcaa
      301 cgaccactct gtctggtcac cgacaccgtc acccttgacg gccttggact tgatcgccga
      361 cacgtccgag ccgagccccg gctcgctcat cgagaacgca ccgcggatct cccccgtcgc
      421 catcctgggc aggtaacgct gcttctgctc ctcggtcccg tgctgcagca gcatgtacgc
      481 cacgatgaag tgcgtgttga tgatcccgct gacgctcatc cagccgcgcg cgatctcctc
      541 cacacacagc gcgtacgtca gcagcgactc ccccagaccg ccgtactcct cggggatcat
      601 caacccgaag atgcccatct ccttcatgcc ctcgacgatc ttcgtcgggt actcgtccgc
      661 gtgctccagc tcctgggcga ccgggatgat ctgctcgtcg acgaactcgc ggacgagctt
      721 gagcagctcc tgctgctcgt cggtcaggcc atcggtctgc tggagtcgag acatgctttg
      781 tcgccgcctt cgttgggaaa tctttcagcc gagtatgccg agtgggccgc tctcggagca
      841 cgtttggggc gtgtgagtcc caccacgaca aaccgccgaa cgaaaatcct gtggcggctc
      901 aacgactatg cctgtcaccc tccagctatg cacttggtgc ctgacacaga gcacaccagc
      961 ttttcctttg acagccgccc cgacgcccct cccgaggggg agcgctggtc cagctgggac
     1021 ggcgccaccc acggccccgg tccgcggccc gactgggtcg tcaccgaact cggcgcggtc
     1081 gaggccgacc tcggggtcct caagaccggc aaggaggcgg acgtccacgc ggtccgtcgc
     1141 tgggtcccgg acggcacgtc caacccggcc cgcgacagcc tgctcgcagc gaagcggtac
     1201 cgcagcagcg agcatcggat gttccatcgc gacgcgggct accaggaggg ccgacgggtt
     1261 cggcgcagcc gcgagatgcg cgccatggct cgccggaccg agttcgggcg cgagctgctg
     1321 tccgggcagt gggctgttgc ggagttcgcg gcgctcggca ccctctggga gctcggcctg
     1381 cccgttccgt atccggtgca gctgaacgac cgcgagatgc tcatggagtt catcggcgac
     1441 gacggcgtcg cggcgccacg gctggcgcag acgaggccag aaccgaccct gctggtcgac
     1501 cttttcgagc agctgcgatc aacgctgact tgtcttgccg cgcaagggtg ggcgcacggc
     1561 gacctctccc cgtacaacgt gctgctgcac cgcgactcgc tcgtggtcat cgactggccc
     1621 caggtcgtcg acatcatcgg caacccccgg ggcttcgagt tcctggagcg cgatgtggcg
     1681 aacatgtgcc ggtggttcac ctccaaaggg ctcgcggtcg atgccgacga gctgatggct
     1741 gacctggtgg ccgccgcaac ggcgcggtgg taacccatac acccggcata cccgctcgtt
     1801 agggtgagcc ggtgtctacc aaggcgtcta gcagggcaac cgtgtcccgc cgcggggtgc
     1861 tccagggcgc cgcagcaacc gtagttctcg gcgtctccgg ctgcgggggc gcgaacgctc
     1921 ctgcaggagt agtacggcgc tcaggcacgt tccgtagccg acactggccg ggccaggatg
     1981 tcggatggca gctcgccctg ccttcgtcgc atcccgccaa gaccaccccg gtcgtcatcg
     2041 ctctgcacgg caggggcggc gccgcgggag atgccttcga ctcgctgcat ctggatcagc
     2101 acgtccgcga ggccgggctc gcagtggtct ccgtggacgg tggcgactac tactggcacg
     2161 cccgtcgcgt gggcatcgac ccgggggcga tggtcgtcga cgacctcctc ccgttgctgg
     2221 tccgccagac cgggtatgcc gggaaggtcg cctttctggg gtggtccatg gggggctacg
     2281 ggtcgctgct gctggccagc cagcttggcc ccagccgcgt tgcggcagtg gtcgcggaga
     2341 gcgcggcgct ctggaccgct cccggactca gcgcccccgg ggcgttcgac gaccgggccg
     2401 acttcgtcgc gcacgacgtc ttcaagcgaa cagcagtctt gagccggatc ccggtgcggc
     2461 tcgactgtgg ctcctcagac ccgttcgtcc ccggcaaccg tgccttcgcc gccgcgctgc
     2521 cctcggccag gctgcgcttt gacccgggcg gccacaccaa cgacttctgg agcagccacg
     2581 ccgcagcaca gctccgctgg atccgccagc agttcgacgc tcagcgagtc tttcagtaga
     2641 cgacgacccg gctgccgacc ggcataagcc cctgcgccca gatcatgtcc atggccgcgt
     2701 cgctcacccg cgcacacccg tgcgaagcgg ggtagcccgg gatcgccgcg gccccgtgga
     2761 ccgcgatccc gccgttgaag taccgagggc gccacaggtc tcccagtggc cccttgtcga
     2821 gatggtccac tgtgcggaac accgcgaacg tccccgacgg ggtgagcgct accgcgtcca
     2881 ccccctggta cgagtagtgc tggccactgc cggtactggt gttcaggatg gtcgtgacgt
     2941 ggccaccccg gacgacgagg agcagctgga gtgccttgtc gatctcgacg ccgtcgccac
     3001 ccacccgcga cgtcggtcgc accccgacct ctagtgcgtg acgcgtcgag ggaccgaaca
     3061 cgccgtctcg cccgaggcct gccgccttct gcagagccat cacggcctgc tcggtcagct
     3121 ggccgaagtt gccgtcggga acaccgttcc agtaaccgag atcggagagc cgctgctgaa
     3181 cggtcctgac gtaggcgccg ctgtcaccag cctgcagggt gtcgccgagc ttcttggccg
     3241 tgggtgacgg ggtcggcgtg ggaacgatct tggacggcgt gggaacgatc tttgatggcg
     3301 tggaaacgac cttggacggt gtgggaacga tctttgacgg cgtgggcgtc gcgcggggct
     3361 tggacgacgg cgttggcgcg ccgctggcca gcgttgcggg cgagcccacc gcgtgggcgc
     3421 tggcgtggct ggacggtaga aggccgcatc cgccgagcgc ggtcgcggcg accgccagac
     3481 tcaaaccaag cctggtcaac acgagtccgg ccccaccact cgctcccctg ctgcgcatgc
     3541 tgctccttcg tccaccccgc ggcgctctac cgccctgtgc ttctgactgc caccgtagac
     3601 tgccccaccg tggctggact cttggtgacc gggactagct cggatgccgg gaagtcgctc
     3661 gtcgtcactg ccctgtgccg cgccttcgcc cggcgaggca tcgatgtcgc gcccttcaag
     3721 gcccagaaca tgtccaacaa ctcgatggtc tgtcgcgacg gctccgagat cggccgggcc
     3781 cagtacctcc aatgccaggc cgcaggcgtc gaagcgtcct cggtgcacaa tcccgtcctg
     3841 ctcaagccgg gcagcgaccg tcgcgcgttc gtcgtcgtcc gtggcaagcc cgccggtgag
     3901 ctccaggccg gcgagtatgc gacgggcagg gtgcatcttg ctcacgcggc gttcgcggca
     3961 tacgaagagc tgtcggcgtc cacggacctt gtcgtcagcg agggtgcggg ttccccagcg
     4021 gaggtgaacc tgcgcaaggg cgactacgtg aacctggggc tggcccggcg cttcgacctg
     4081 ccggtcctgc tcgtgggcga catcgaccgc ggcggggtgc tggcggcgct cttcgggacc
     4141 tgggcactac tcgacgagga cgaccgggcg ctgctgaagg cctttgccat
//
LOCUS       DASYFY010000366         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_25976, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000366 DASYFY010000000
VERSION     DASYFY010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25976"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1164)
                     /locus_tag="VGN19_07335"
     CDS             complement(<1..1164)
                     /locus_tag="VGN19_07335"
                     /inference="COORDINATES: protein motif:HMM:NF045284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HEV7195736.1"
                     /translation="MAVKAGDLELKLIDILGACVAERLPEESADSYAEFVRQYYHWVP
                     AQDLRDRNPLDLCGAVVAHWRAAKHRLPGEAKVSVYNPDIERDGWHSPYTVVQIVSDD
                     MPFIVDSVTMELSRQGYAIELIVHPVIRVVRDGDGELAQTLEPGGSADGLVIESVIHA
                     EVAHQADNDRLAVLRAGVELVLEEVNATVDDWDPMRDRAAELARELREKPPPLPADEL
                     NEAEAFLEWLRDDNFTFLGYREYELGDSVISSVPGTGMGILRGASARPTKRLETRALE
                     LARSPHALVLTKANSRATVHRPAYMDYVGVKRFGPDGHVIGERRFLGLYTTVAYKTSP
                     REIPMLREKVERVLARAAFPPHSHDAKGMLDILESLPRDLLVQISTDELFEMAI"
     gene            complement(1264..>1530)
                     /locus_tag="VGN19_07340"
     CDS             complement(1264..>1530)
                     /locus_tag="VGN19_07340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195737.1"
                     /translation="QDVHVDQAPYEALRGIRAPGTGVPRVLAYGVRLLTGGCPDFAAL
                     HGKGPAVCVDLAPQAGFGRLLVTVDDPEATVTSLRSSLTPQRAA"
BASE COUNT          237 a          531 c          526 g          236 t
ORIGIN      
        1 gatcgccatc tcgaacagct cgtcggtgga gatctggacc agcaggtcgc ggggcagcga
       61 ctcgaggatg tcgagcatgc ccttggcgtc gtggctgtgc ggaggaaagg cggcccgggc
      121 cagcacccgc tcgaccttct cgcgcagcat cgggatctcg cgcgggctgg tcttgtaggc
      181 gaccgtcgtg tacaggccca ggaagcggcg ctcgccgatc acgtgaccgt cgggcccgaa
      241 gcgcttgacc ccgacgtagt ccatatacgc gggccggtgc acggtggcgc gcgaattggc
      301 cttggtcagc accagcgcgt gcggcgaccg cgccaactcc agggcgcgcg tctccaggcg
      361 tttggtgggg cgcgccgagg cgccccgcag aatccccatc ccggtgcccg gcacggacga
      421 gatgaccgaa tcgccgagct cgtactcccg gtagcccagg aaggtgaagt tgtcgtcgcg
      481 cagccactcc aggaaggcct ctgcctcatt gagctcgtcg gccgggagcg ggggcggctt
      541 ctcgcgcagc tcgcgtgcca gctccgcggc tcggtcgcgc atcgggtccc agtcgtcgac
      601 cgtggcgttg acctcctcga gcaccagctc gaccccggcc cgaagcacgg ccaggcggtc
      661 gttgtcagcc tgatgggcga cctcggcgtg aatcaccgat tcgatcacca gcccgtcggc
      721 gctgccgccc ggctccagcg tctgcgccag ctccccgtca ccgtcgcgga cgacccggat
      781 caccggatgc acgatcagct cgatcgcgta cccctggcgg ctgagctcca tggtcaccga
      841 gtcgacgatg aacggcatgt cgtcggacac gatctggacc accgtgtagg gcgaatgcca
      901 cccgtcacgc tcgatgtcgg ggttgtagac gctgactttg gcctcgccgg gcaggcgatg
      961 cttggccgcg cgccagtgcg ccaccacggc gccgcacagg tccagcgggt tgcgatcgcg
     1021 aaggtcctgg gccggaaccc agtggtagta ctgacgtacg aactcggcgt acgagtccgc
     1081 tgactcctcc ggaaggcgct ctgccacgca ggcgcccaag atgtcgatca gcttcagctc
     1141 gagatctccg gccttgacgg ccatcccgat actgcctcct ttgtgtgcgc gatgaccacc
     1201 aaacctaccc gtcggacggt tgccgcgcat cagcgcaagg aaaatgccgc ggcttgcagt
     1261 tgttcaagcg gcgcgctgtg gggtcaggct cgagcgcagg gacgtgaccg tcgcctcggg
     1321 gtcgtccacg gtgaccagga gccggccgaa gccggcctgg ggggccagat ccacgcacac
     1381 cgccgggccc ttgccgtgca gcgcagcgaa gtcgggacag ccgccggtca gcaggcggac
     1441 accgtaggcc aggacccgtg ggactcccgt gccgggggcc cggataccgc gcagcgcctc
     1501 gtacggcgcc tggtcgacgt ggacgtcctg
//
LOCUS       DASYFY010000367         3606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_446229, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000367 DASYFY010000000
VERSION     DASYFY010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446229"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1972)
                     /gene="secD"
                     /locus_tag="VGN19_07345"
     CDS             complement(158..1972)
                     /gene="secD"
                     /locus_tag="VGN19_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEV7195738.1"
                     /translation="MAINPHHRKPLRVLAGLAAIILGLYGLLFAATTLGTAQWKPKLG
                     LDLEGGTQLVLQPVLVGNQSVSQDELNQARDIIVQRVDAGGIAGAEVTTRNGQSIVVS
                     MPGIPDKATEDAIRKSSQMQFRGVLEAASGVPQPVPSTTSSGATTTPGSTATPGATAT
                     SGAKATSGASPKASTTTTAKSGLPQAFVKATTGTSTPSATATGSTTATSTPTASAPAA
                     KPTNPNDLAWVTPDVAAAFQRLDCSKPHALDHIVNDPKKPLVTCSVDGVEKFVLGPVI
                     VAGDQISSASAGYQTLPNGQPSTTVEIQLSFKSSGTKAYGDASTRMVSLPSPRNRMAA
                     VLDSRSIVAPSFNEAILAGQASITGNFTIKSARDLANQLKFGALPMSFSLQTRDQISP
                     TLGSEQLRFGLIAGIIGFALVFLYSLAQYRALGLVTVLSIVIAALLTYVSIALLGWSH
                     NFRLDMAGVTGLIVAIGVTADSFIVYFERIRDEVREGRPLRAAVDTGWRRARRTILAA
                     DGVNFLAALVLYLLASSNVRGFAFTLGLTTLIDLLIVTMFTHPLVAILASTKFFGGGH
                     RWSGLDPERLGAKIVRYAGRGRVAVGRPAPVVSEGGTL"
     gene            complement(1986..2318)
                     /gene="yajC"
                     /locus_tag="VGN19_07350"
     CDS             complement(1986..2318)
                     /gene="yajC"
                     /locus_tag="VGN19_07350"
                     /inference="COORDINATES: protein motif:HMM:TIGR00739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEV7195739.1"
                     /translation="MSSGGSSASLLIFLLPVLLIGYMIFGQRRRQREVQSLQSTLEVG
                     DEICTTSGMFGTVTGIEGTVIDLEIASGVTIRVDRRAIGSKVSPIAAPLDDTGVDADA
                     PDASDSTE"
     gene            complement(2450..3553)
                     /gene="ruvB"
                     /locus_tag="VGN19_07355"
     CDS             complement(2450..3553)
                     /gene="ruvB"
                     /locus_tag="VGN19_07355"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEV7195740.1"
                     /translation="MADGFSSEIFEDESLDATARIVDAGGDADDRTVEAALRPRRLSE
                     LSGQQRVRDQLSLVLEAAKQRGTPPDHMLFSGPPGLGKTTMAMIVAAELERPIRITSG
                     PAIQHAGDLAALLSSLMEGEVLFLDEIHRMSRSAEEMLYLAMEDFRVDVIVGKGPGAT
                     AIPLELPVFTVVGATTRAGLLPAPLRDRFGFTGHLDFYATEDLVTILHRSARLLRVSA
                     DPAGIAEIAGRSRGTPRIANRLLRRVRDWAEVHGHGVVDEHAAHVALALFDVDDRGLD
                     RLDRAVLDALCRRFAGGPVGLSTLAVAVGEEADTVESVAEPFLVREGLIARTPRGRVA
                     TPLAWSHLGIRPPAGLDLQAPLPLETDSGRFGG"
BASE COUNT          564 a         1176 c         1339 g          527 t
ORIGIN      
        1 cggaactcga gactgaggtt caggccgtgg agggtgagcc caagagccgc caggaggatg
       61 aagacgcccg agagggcgta ccaccgccgg tgccgaccga cgaagtcgat cgagcgcttg
      121 ccggtgtaca ggtcgttgcc cagtgcggcg aagttgatca cagggtgcct ccttcgctca
      181 cgacgggagc aggtcggccg acggcgaccc tgccacgccc ggcatacctg acgatcttgg
      241 ctcccagccg ctccgggtcg agcccggacc aacggtgacc gccaccgaag aacttcgtgc
      301 tcgccaagat agccaccagc gggtgggtga acatcgtgac gatcaacagg tcgatcaagg
      361 tggtcaggcc gagggtgaac gcgaagccgc ggacgttgga agacgccagc aggtacagca
      421 cgagcgcggc caggaagttc accccatcgg cggcgaggat ggtgcgccgg gctcggcgcc
      481 accccgtgtc cactgcggcg cgcagcgggc gcccctcgcg gacctcgtcc cggatgcgtt
      541 cgaagtagac gatgaacgag tcagcagtga caccgatggc cacgatcaga cccgtgactc
      601 ccgccatgtc gagccggaag ttgtgcgacc acccgagcag ggcgatcgac acataggtca
      661 gcagggcagc gatgacgatc gagagcaccg tgaccaggcc gagtgcccgg tactgcgcca
      721 gcgagtagag gaacaccagg gcgaagccga tgatgccggc gatcagaccg aaccggagct
      781 gctcgctgcc cagggtcggg ctgatctggt cccgcgtctg cagcgagaag gacatgggca
      841 gcgcgccgaa cttcagctgg ttggcgaggt cgcgggcgct cttgatggtg aagttgccgg
      901 tgatgctggc ctgtcccgcc aggatcgcct cgttgaacga cggcgcgacg atcgaccggg
      961 agtcgaggac cgcggccatc cggttgcgcg ggctgggcag gctgaccatg cgggtgctgg
     1021 cgtccccgta ggccttggtg ccgctggact tgaacgacag ctggatctcg accgtcgtcg
     1081 acggctggcc gttggggagg gtctggtacc cggccgacgc gctcgaaatc tggtcgccgg
     1141 ccacgatgac cggacccagc acgaacttct cgacaccgtc gacgctgcag gtgaccagcg
     1201 gcttcttggg gtcgttgacg atgtggtcga gcgcgtgggg cttggaacag tcgagccgct
     1261 ggaacgccgc ggccacgtcg ggggtgaccc acgcgaggtc gttggggttg gtcggcttgg
     1321 ctgccggagc agaggcggtg ggcgtcgagg tcgcggtcgt cgagcctgtc gccgtggcgg
     1381 agggggtcga ggtccccgtc gtggccttga cgaacgcctg cggcagaccg gacttggcgg
     1441 tggtcgtcgt cgaggccttc ggggatgccc cgctggtcgc cttggcgccg gaggtcgcgg
     1501 tcgcgcctgg ggtcgcggtc gagcccgggg tggtcgtcgc accgctcgag gtggtgctcg
     1561 ggacgggctg cggcaccccg gaggctgcct ccaggactcc gcggaactgc atctgcgagg
     1621 acttgcggat cgcgtcctcg gtggccttgt cggggatccc cggcatgctg accacgatcg
     1681 actgcccgtt gcgtgtggtg acctctgcac cggcgatgcc gccggcgtcc acgcgctgga
     1741 cgatgatgtc gcgagcctgg ttgagctcgt cctgcgagac gctctggttg ccgaccagga
     1801 ccggctgcag gacgagctgg gtgccgccct cgaggtccag acccagcttg ggcttccact
     1861 gggccgtgcc cagggtggtc gcggcgaaca gcagcccata gaggccgagg atgatggccg
     1921 ccagccctgc caggacgcgc agaggcttgc gatggtgcgg gttgattgcc acggtgcgaa
     1981 gacctctact cggtgctgtc ggaggcgtcg ggagcatcgg catcgacgcc ggtatcgtcg
     2041 agcggagccg cgatcgggct caccttgctc ccgatggccc gccggtcgac gcggatggtg
     2101 actcccgagg cgatctcgag gtcgatgacg gtgccctcga tgccggtcac ggtgccgaac
     2161 atgccggagg tggtgcagat ctcgtcgccc acctcgaggg tgctctgcag agactggacc
     2221 tcgcgctgac gccgccgctg accgaagatc atgtagccga tcaggagcac gggcaacagg
     2281 aagatcagca ggctggctga ggagccgcca cttgacatga ggaaatcctt cacggcgagg
     2341 tgggtgtcgg tgcgcacccg tgtgggcgac cgcccgagtc taggtgactc ccggcatacc
     2401 gaccaacgtg ccccgtcggc gtggcgttcc agacgaccgg gtatgccggt cagccgccga
     2461 agcggcccga gtcggtctcc agcggcagcg gggcctgcag gtccaggccc gcgggtgggc
     2521 ggatcccgag gtggctccac gcgagcggcg tcgcgacccg cccgcgcggc gtccgggcga
     2581 tcaggccttc gcgcaccagg aagggctcgg ccaccgactc cacggtgtcc gcctcctccc
     2641 ccacggccac ggccagcgtg gacaaaccca caggacctcc ggcgaaccgg cggcacagcg
     2701 cgtcgaggac cgcacggtcc agccggtcga ggccgcggtc gtccacgtcg aaaagggcaa
     2761 gtgccacgtg cgccgcgtgc tcgtcgacga cgccatggcc gtgcacctcg gcccagtcgc
     2821 ggacccggcg taggaggcgg ttggcgatcc ggggggtgcc acgcgatctg ccggcgatct
     2881 cggcgatccc cgcggggtcg gcgctgaccc tcaacaggcg ggccgagcga tgcaggatgg
     2941 tcacgaggtc ctcggtcgcg tagaagtcca ggtggccggt gaacccgaag cggtcgcgca
     3001 ggggggccgg cagcaggccc gcccgggtgg tggcgccgac gacggtgaag accgggagct
     3061 cgagcgggat ggcggtcgcg ccggggccct tccccacgat gacgtcgacg cggaagtcct
     3121 ccatcgccag atagagcatc tcttcggcgg accgggacat ccggtggatc tcgtcgagga
     3181 agagcacctc gccctccatg agcgacgaga gcagcgccgc caggtcgccg gcgtgctgga
     3241 tggccggccc actggtgatc cggatcgggc gctcgagctc cgcggccacg atcatcgcca
     3301 tggtcgtctt gcccaagccg ggcggcccgg agaacagcat gtggtccggc ggcgtccctc
     3361 gctgcttggc ggcctcgagc accagggaca gctggtcgcg cacccgctgc tgcccggaga
     3421 gctcgctgag ccgtcttggg cgcagggcgg cctcgacagt gcggtcgtcc gcgtcaccgc
     3481 cggcgtcgac gatccgggcg gtggcgtcga gcgactcgtc ctcgaagatc tccgaggaga
     3541 acccgtcagc catgggagcc accctgccgc acatggggcg tcatcggggt ccgagctcgc
     3601 gcagcg
//
LOCUS       DASYFY010000368         3336 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_918976, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000368 DASYFY010000000
VERSION     DASYFY010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_918976"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="VGN19_07360"
     CDS             complement(<1..357)
                     /locus_tag="VGN19_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P N-terminal domain-containing
                     protein"
                     /protein_id="HEV7195741.1"
                     /translation="MSEEQTKSDNRGRPTTDELRAFIAEDWSPRTPAHTGVTDAARYA
                     AGRRAAVSAAFPGERLVIPAGGFKVRSNDTDYVFRPHSAFVHLTGLGGDREPDAVLLM
                     EPRDDGTHEAILYFRPL"
     gene            complement(404..2107)
                     /locus_tag="VGN19_07365"
     CDS             complement(404..2107)
                     /locus_tag="VGN19_07365"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HEV7195742.1"
                     /translation="MSHQLSPLGRAQAIEALSCGEELDLLVIGGGVVGSGTALDSVTR
                     GLSTGLIEQRDFASGTSSRSSKLIHGGLRYLEMLDFALVREALRERGLLLTRLAPHLV
                     RPVPFLYPLSHHVWERAYVGSGIALYDAMATGSGHSAGLPRHRHLTRKQALRLMPSLK
                     SSALTGAVQYYDAQVDDARHTMELARTAAHYGAHVANRVAAVGFLRQGERVTGVRAID
                     KLTDREFEIHARQIVNATGVWTDDTQAMVGERGQFHVRASKGIHLVVPKDRIHSSTGL
                     ILRTETSVLFVIPWGRHWIIGTTDTDWSLDKAHPAATRADIDYLLDHVNRVLSTPLSH
                     EDVEGVYAGLRPLLAGESESTSTLSREHVVAHSAPGLVVVAGGKYTTYRVMAKDAVDE
                     AAQTFPGRVAPSTTENVPLLGAVGFHATWNQRHTLARQAGLHVARVEHLLRRYGVLTQ
                     ELLDLVAERPDLGEPLEGAEDHLKAEVVYAASHEGALHLTDVLTRRTRISIEAWDRGV
                     SAAPGAAALMAPVLGWDEDRIKAEVEIYLGRVDAERVSQTMTDDASADEARRRGPDNT
                     L"
     gene            complement(2112..>3336)
                     /gene="glpK"
                     /locus_tag="VGN19_07370"
     CDS             complement(2112..>3336)
                     /gene="glpK"
                     /locus_tag="VGN19_07370"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEV7195743.1"
                     /translation="VWQDTRTDRIARALQRSGAGEVIRERAGIPPAAYFSAGKLQWIL
                     QEVDGARALADSGDLAFGTIDTWLLWNLTGGTDGGVHVTDVTNASRTMLMDLRTLDWD
                     DELLGFFDLPRSVLPQIRPSSDPRSYGVTRASGPLGGEVPLTGALGDQQAATVGQVCF
                     SPGEGKNTYGTGNFMILNTGTELVRSESGLLTTVCYQLGDDPPTYALEGSIAVTGSAV
                     QWLRDQLGIISGAADIEPLASQVDDTGGLYFVPAFSGLFAPYWRPDARGAIVGMSRFN
                     TNAHLARATLEAICYQTRDVSDAMTTDSGVQLEVLKVDGGVTANSLCMQLQSDILGVP
                     VSRPVVAETTALGAAYAAGLATGFWSDTQELRANWQESRRWNPTWTEAQRRDGYAGWR
                     KAVERTLDWVDVDEE"
BASE COUNT          484 a         1098 c         1227 g          527 t
ORIGIN      
        1 cagcgggcgg aagtagagga tggcctcgtg cgtgccgtcg tcgcgcggct ccatgagcag
       61 cacggcgtcc ggctcgcggt cgccgccgag accggtgagg tgcacgaagg cgctgtgcgg
      121 ccggaagacg tagtcggtgt cgttgctgcg caccttgaaa ccaccggccg ggatgacgag
      181 gcgctctccc gggaaggcgg cgctcaccgc ggcacgccgg ccggcggcat accgcgcggc
      241 gtcggtgaca ccggtgtggg cgggcgttcg tggcgaccag tcctcggcga tgaaggctcg
      301 cagctcgtcg gtggtggggc gcccgcggtt gtctgacttg gtctgttctt cgctcacgag
      361 cacatcgtcg catgcccgga tgacgcgctg tcagagcgtg ttgttagagg gtgttgtcgg
      421 ggccgcggcg ccgggcctcg tccgcggagg cgtcgtcggt catggtctgg ctgacccgct
      481 cggcatcgac ccggcccaga tagatctcga cctcggcctt gatgcggtcc tcgtcccagc
      541 ccagcacggg agccatcagg gcggccgcac ccggggcggc agagaccccc cggtcccagg
      601 cctcgatgga gatccgggtc cttcgggtca ggacatcggt gaggtgcagg gcaccctcgt
      661 gcgaggcggc gtagacgacc tccgccttga ggtggtcctc cgcgccttcc agcggctccc
      721 cgagatcggg tcgctcggcg accaggtcga gcagctcctg ggtcagcacg ccgtagcggc
      781 gaaggaggtg ctccacccga gccacgtgca ggccggcctg gcgagccagg gtatgccgct
      841 ggttccaggt ggcgtggaag ccgacggccc ccagcagcgg cacgttctcc gtggtggagg
      901 gggcgacccg gcccgggaac gtctgggcag cctcgtcgac ggcgtccttg gccatgaccc
      961 ggtaggtcgt gtacttgccg cccgcgacga cgacgagtcc cggcgccgag tgcgcgacca
     1021 cgtgctcgcg cgacagcgtg ctggtcgact cggactcgcc ggccagtagg ggtcgcaggc
     1081 ctgcatagac gccctcgacg tcctcgtggc tcaacggggt cgagagcacc cggttgacgt
     1141 ggtcgagcag gtagtcgatg tccgcgcggg ttgccgccgg gtgggccttg tcgagcgacc
     1201 agtccgtatc cgtcgtcccg atgatccagt ggcgacccca cgggatgacg aacagcaccg
     1261 aggtctcggt gcgcaggatc aggccggtcg aggagtggat ccggtccttg ggcacgacta
     1321 ggtggatgcc cttggacgcg cgcacgtgga actggccgcg ctcgccgacc atggcctggg
     1381 tgtcgtcggt ccacactccg gtcgcgttga cgatctggcg ggcgtggatc tcgaactcgc
     1441 ggtcggtcag cttgtcgatc gcgcgcaccc cggtcacgcg ctcgccttgg cgcagaaagc
     1501 caacggctgc aacgcggttc gccacgtgcg ctccatagtg ggcggcggtg cgggcgagct
     1561 ccatcgtgtg ccgcgcgtcg tcgacctggg cgtcgtagta ctgcacggcg ccggtgagcg
     1621 ccgaggactt gaggctgggc atgagtcgca aagcctgctt gcgggtcagg tgccggtgtc
     1681 gggggagtcc cgcgctgtgg ccggaccccg tcgccatggc gtcgtagagg gcgatccccg
     1741 atccgacgta cgcgcgctcc cagacgtgat gggacagcgg gtagaggaac ggaaccggcc
     1801 ggaccaggtg cggtgccagg cgggtcagca ggaggccgcg ctcgcgcagg gcctcgcgga
     1861 ccagagcgaa gtcgagcatc tccaggtacc gcagcccgcc gtggatgagc ttgctggacc
     1921 gcgacgaggt gccgcttgcg aagtcgcgtt gctcgatcag acccgtggac aggccgcggg
     1981 tgacggagtc caaggcggtg ccggagccga ccacgccacc accgatgacg agcaggtcga
     2041 gctcctcgcc gcaggacagc gcctcaatgg cctgcgctcg ccccagaggc gaaagctggt
     2101 gactcatcgt cctactcctc gtcgacatcg acccagtcga gggtgcgctc cacggccttg
     2161 cgccatccgg cgtacccgtc gcggcgttgc gcctcggtcc aggtggggtt ccagcggcgc
     2221 gactcctgcc agttggcacg cagctcctgg gtgtctgacc agaaacctgt cgccaggcca
     2281 gcagcgtagg cggcccccag tgcggtggtt tcggcgacca cgggtcggga caccggaacg
     2341 ccgaggatgt ccgactgcag ctgcatgcac aagctgttgg cggtcacacc gccgtcgacc
     2401 ttgaggacct ccagctgcac gccactgtcc gtggtcatgg catcagagac atcacgggtc
     2461 tggtagcaga tggcctccag ggtggcccgc gccaggtggg cattggtgtt gaacctgctc
     2521 atgccgacga tcgccccgcg ggcgtccggt cgccagtagg gggcgaagag ccccgagaag
     2581 gctggaacga agtacaggcc gccggtgtcg tcgacctggc ttgccagcgg ctcgatgtca
     2641 gcggcaccgg agatgatgcc gagctggtcg cgcagccact ggactgccga tccggtgacg
     2701 gcgatcgacc cctccagggc ataggtcggg ggatcgtccc ccagctggta gcacaccgtg
     2761 gtcagcagtc cggactcgct gcggacgagc tcggtgccgg tgttgaggat catgaagttg
     2821 ccggtgccgt aggtgttctt gccctcgccc ggactgaagc acacctgacc gacggtggct
     2881 gcctgctggt cacccagcgc gccggtgagg ggaacctcgc cgccgagggg cccgctcgcg
     2941 cgggtcacac cgtaggagcg tgggtccgag ctggggcgga tctgggggag cactgaccgc
     3001 gggaggtcga agaaccccaa cagctcgtcg tcccagtcga gggtgcgcag gtccatcagc
     3061 atcgtgcgac tggcgttcgt cacgtcggtg acgtggacac ccccgtcggt tccccccgtg
     3121 aggttccaga gcagccaggt gtcgatcgtg ccgaacgcaa ggtccccgct gtcggcgaga
     3181 gcgcgggctc cgtcgacctc ctgcaggatc cactgcagct tccccgcgga gaagtaggcc
     3241 gctggtggga tgccggcccg ctcgcggatg acctcgccgg ccccggaccg ctggagggct
     3301 cgggcgatcc tgtctgtgcg ggtgtcctgc cagacg
//
LOCUS       DASYFY010000369         2389 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1287943, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000369 DASYFY010000000
VERSION     DASYFY010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1287943"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..568)
                     /locus_tag="VGN19_07375"
     CDS             complement(<1..568)
                     /locus_tag="VGN19_07375"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEV7195744.1"
                     /translation="MPAGRDAWQAPPRPSALELLERSTAYCGASLRLVTVADLGRATP
                     CAGWTLGDLLRHVDDSLAALDEAAEGGTISLSCAPRRVADLELVDRVCDRARGLLGHW
                     IAPHGTGVALGTHQVPLEVLAAVGALELTLHGWDVGRALGRPRALPAALARDLWPVAC
                     QHIAATDRPVRFGAVRRVRPGAGPEELLL"
     gene            complement(577..1593)
                     /locus_tag="VGN19_07380"
     CDS             complement(577..1593)
                     /locus_tag="VGN19_07380"
                     /inference="COORDINATES: protein motif:HMM:NF006089.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7195745.1"
                     /translation="MSEVTATAQPQRSVEEFPAVTDTYRRELTAHCYRMTGSIHDAED
                     LVQETYLRAWRAYAAFEGRSSVRTWLYRIATNVCLTSLEGKARRPLPTGLGAPAADPA
                     DTLVQSNEVSWLEPAPDPLVVGDASDPATIVAEREGIRLAFVAALQHLPARQRAVLIL
                     RDVLRWRAAEVAEALETSEAAVNSALQRAHAQLDRAQVTRDTVEPTLDATQQAMLERY
                     VQAFWDKDIDAIVAMLTHDAVWEMPPYTGWYRGAQNIGRLIDTQCPGGVHDMPMRATS
                     ANGQPAFGLYLREPDGTFAAFQLQVLTLTEGKVGHVAAFFDPSLFARFGLPDTLPADR
                     PVPA"
     gene            complement(1739..>2389)
                     /locus_tag="VGN19_07385"
     CDS             complement(1739..>2389)
                     /locus_tag="VGN19_07385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7195746.1"
                     /translation="VQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGA
                     FAGLEKLIESRSGKKGLGFGSELHTPKDLAQSMGEVMPEDLMKFGLIPEFIGRLPVIT
                     TVSPLDRDALVTILTAPRNALVKQYKKMFEIDGVDLEFSDDALEAIADQALKRGTGAR
                     GLRAIMEEVLMPVMFDVPSDDGISRVVVSREVVLDNVLPTIVRRDEEPKRARKRSA"
BASE COUNT          359 a          840 c          848 g          342 t
ORIGIN      
        1 cgaggagcag ctcctccggc ccggcgccgg gccggacgcg gcgcacggca ccgaaccgaa
       61 ccggtcgatc ggtcgcggcg atgtgctggc aggcgaccgg ccacaggtcg cgggccaggg
      121 cagctggaag ggcgcgcggt cgccccagtg cgcggcccac gtcccagcca tgcagggtga
      181 gctcgagggc gcccaccgcg gccaggacct ccagcggcac ctgatgcgtg cccagcgcga
      241 cccccgtgcc atgcggcgcg atccagtgac cgagcaggcc ccgggcccgg tcgcagaccc
      301 tgtcgacgag ctcgaggtca gccacccgac ggggggcgca tgacagcgag atggtcccgc
      361 cctcggcggc ctcgtccagg gccgccaggg agtcgtccac gtgtcgcagc aggtcaccca
      421 gggtccagcc ggcgcacggc gtggcccggc cgaggtctgc aacggtgacg agccggagac
      481 tggcgccgca gtaggcggtc gaccgttcga gcagctcgag tgcgctgggg cgcggcggcg
      541 cctgccaggc gtcacgacct gcgggcacgg ccgacctcac gcaggcacgg ggcggtccgc
      601 cggcagggtg tccgggagac cgaacctcgc gaagagcgat gggtcgaaga aggccgccac
      661 gtggccgacc ttgccttcgg tcagggtgag gacctgaagc tggaaggctg cgaaggtgcc
      721 atcaggctcg cgcaggtaca ggccgaaggc cggctggccg ttggccgagg tggcccgcat
      781 gggcatgtcg tgcaccccgc ccgggcactg ggtgtcgatg agccggccga tgttctgcgc
      841 tccgcggtac cagccggtgt acggcggcat ctcccagacg gcgtcgtgcg tcagcatggc
      901 cacgatggcg tcgatgtcct tgtcccagaa cgcctggacg taccgctcga gcatcgcctg
      961 ctgggtggcg tccagcgtag gttccacggt gtcacgggtg acctgggccc ggtcgagctg
     1021 ggcatgcgcg cgctggaggg cgctgttgac ggccgcctcg ctggtctcca gggcttcggc
     1081 cacctcggcc gcccgccacc tcagcacgtc acgcaggatc agcacggccc gctgtcgcgc
     1141 cggcaggtgc tgcagggccg cgacgaaggc cagccggatg ccctcgcgct cggccacgat
     1201 ggtcgccggg tcactggcgt ccccgacgac gagcgggtcg ggagccggct ccagccacga
     1261 cacctcgttc gactgcacca gggtgtcggc cgggtctgcg gcgggcgcgc ccaggccggt
     1321 cggcaacggg cgacgggcct tgccctccaa cgacgtcagg cacacgttcg tggcgatccg
     1381 gtagagccac gtccggaccg aggaccggcc ttcgaacgcg gcatacgctc gccacgctcg
     1441 cagataggtc tcctggacca ggtcctcggc gtcgtggatg gagcccgtca tccggtagca
     1501 gtgtgcggtg agctcgcgac ggtaggtatc cgtcaccgca gggaactcct cgaccgaccg
     1561 ttgcggctgt gctgtcgccg tcacctcgga catccgggcc ctcctccggg aactcacgcc
     1621 tggtccggga actcacgccc ggtccagcgc gctccccgcc agcctagaca ccgaggggat
     1681 acggcaggac agacttctgg cgcgacgaaa actcatcggc caggactctc gcagaggttc
     1741 aggcagagcg cttgcgggcc cgcttgggct cctcgtcgcg ccgcacgatc gtcggcagga
     1801 cgttgtccag gacgacctcg cgcgagacca cgacccggga gatgccgtcg tcactcggca
     1861 cgtcgaacat gaccggcatc agcacctcct ccatgatcgc gcgcaggcca cgggctccgg
     1921 tgccacgctt cagcgcctgg tcggcgatcg cctcgagggc gtcgtcggag aactcgaggt
     1981 cgacgccgtc gatctcgaac atcttcttgt actgcttgac cagcgcgttg cgcggcgcgg
     2041 tcaggatggt gaccagggcg tcgcggtcca gcgggctgac cgtcgtgatg accggaagcc
     2101 gcccgatgaa ctccgggatg agaccgaact tcatcaggtc ctcgggcatg acctcaccca
     2161 tggactgcgc caggtccttg ggcgtgtgca gctccgaccc gaagccgagc cccttcttgc
     2221 cgctgcgcga ctcgatgagc ttctcgagac ccgcgaacgc cccacccacg atgaacagca
     2281 cattagtggt gtcgatctgg atgaactcct ggtgcgggtg cttgcgtccg ccctggggcg
     2341 gcaccgacgc ggtggtcccc tcgaggatct tcaacagggc ctgctggac
//
LOCUS       DASYFY010000370         8800 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1078484, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000370 DASYFY010000000
VERSION     DASYFY010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8800
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1078484"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /gene="rnpB"
                     /locus_tag="VGN19_07390"
     ncRNA           complement(<1..275)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VGN19_07390"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(353..1807)
                     /locus_tag="VGN19_07395"
     CDS             complement(353..1807)
                     /locus_tag="VGN19_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HEV7195747.1"
                     /translation="MRMRKLRVRVPSADQRDATASALAERFEAIRVELSVPDTFCDVV
                     LAEATRCAAAPSLPERDETTRPFLTIDPPGSMDLDQAMHLEREDDGYRVRYAIADVPA
                     FVMAGGAVDVETRKRGQTIYAPDRRTPLHPAVLGEGAASLLPGQVRPAFVWDLRLHAD
                     GQVRDAAVYRAMVLSTDRLDYDGVQRALEAGTQDERLTLLREVGRKRLELERRRGGAS
                     LPMPEQEVEKDESGHYRVRFRPPLEVEDWNAQISLMAGMAGAELMTRAKIGILRTMPA
                     PDERVVNRLRQASKALGVEWQHGMAYGEFLRTLDRTNPAHLALIHEATALFRGAGYTP
                     FDGTVPDHHEHAAVAAPYAHVTAPLRRLVDRFALVICEAISQGHEVPAWARDALPSLP
                     QIMAASDKVAGAVERACADAVEAATLQHRVGEVFDAVVVDLRDNGEGALVQVQDPAVL
                     SKAAGAGELGTRVKVELVEATVATGTVRFRIVTA"
     gene            1850..2596
                     /locus_tag="VGN19_07400"
     CDS             1850..2596
                     /locus_tag="VGN19_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEV7195748.1"
                     /translation="MLILLPPSESKTGRARGRPMDHERLSFPELDATRRTVAQALAKL
                     SGHPDAASVLRVSPALSDQIARNLQLHTAPAQPASKVYSGVLYDALDYASLDTASKRR
                     ANRWLVIVSALYGAVRPTDLIAPYRLSMAVNLPGVGALASAWKPELADVLPAAAGRGL
                     VVDCRSSTYAAAWTPRDDLARRWAQVNVPGATHLAKYTRGLVARRLCEVGVEARTVPQ
                     LADLLSDTFTVAVSAPSRPGKPWVLDATAQ"
     gene            2607..3707
                     /locus_tag="VGN19_07405"
     CDS             2607..3707
                     /locus_tag="VGN19_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEV7195749.1"
                     /translation="MTISELADLAQRVGPVLVFFIAITVVAEIADSAGVFETAGHWAA
                     RAGHHRTAVLWLLFVVVAVVCTVFLSLDTTAVLLTPVGLAVAAQLGISPLPFALTTLW
                     LANTASLLLPVSNLTNLLSLHQFDRLGVGHAGYVRLAALPAAGAIVGTVIVLFLWHRR
                     DLRGRYEPDVAPEPHDPVMLRCAGAVCLAIGPLFALGLSPAWVSSVAAVVLLVASWTR
                     DRGRLRQVAVPWRLAVGVALLFVLVDVALRHGLGPVLTGLVGTGTSAGALLRVAGGGA
                     LAANLADNLPAYVALESVTSDAPQRLMALLVGVNVAPLVTPWASLATLLWAQRCRARG
                     VRISPWRLAAQGATCAVAAGGLAVGALILVGR"
     gene            complement(3722..4960)
                     /locus_tag="VGN19_07410"
     CDS             complement(3722..4960)
                     /locus_tag="VGN19_07410"
                     /EC_number="4.2.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018769986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HEV7195750.1"
                     /translation="MSSTPEDISPPNDSPPNSSSPRTWRPDTIAVRGGLNRSNFDETA
                     EALYLTSGFVYASAEQAEAAFKDEVEHFIYSRYGNPTVTMFEERLCQLEGAQACFATA
                     SGMAAVFVALAALLGQGDRVVSSRGLFGSCFVILDEILPRWGVETVFVDGPDLDQWRE
                     ALAEPTAAVFFETPSNPMQELVDMRAVSDLAHAAGAQVIVDNVFGTPVFSRPLEHGAD
                     IVVYSATKHIDGQGRTLGGAVLGTADFINGPVKNLMRHTGPSMSPFNAWVLVKGLETL
                     SLRVERQAENALTVARALEAHPSVTTVVYPWLESHPQYELARRQMLGGGTVVTFELDG
                     GKAEAFAFMNGLRIVDISNNLGDSKSMVTHPATTTHRRLTPEARAAVGITDGTVRISV
                     GLEDPLDLVEDLQRALGQRP"
     gene            complement(4957..5370)
                     /locus_tag="VGN19_07415"
     CDS             complement(4957..5370)
                     /locus_tag="VGN19_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEV7195751.1"
                     /translation="MTYAGDVQPEEAYAALAAGEDAVLVDVRTAAEWNYVGVPDLSVL
                     GKRVVCLEWQTYPDGAVNGDFVEQLRDVGLPDGAALYFLCRSGVRSVAAAQAATAAGL
                     GPAYNVVDGFEGPHDQFGHRTVAGWKVAGLPWTQG"
     gene            complement(5475..6617)
                     /locus_tag="VGN19_07420"
     CDS             complement(5475..6617)
                     /locus_tag="VGN19_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional RNase H/acid phosphatase"
                     /protein_id="HEV7195752.1"
                     /translation="MGRALIVEADGGSRGNPGVAGYGALVRDAATEALLWEGAAPLGK
                     ASNNVAEYSGLIAGLRAARRIDPAADIEVRMDSKLVVEQMAGRWKIKHQDMRRLALEA
                     RDELAELSRSGGSVTFTWIPREENKAADALSNTGMDGRTVDHMLEDGTLEDGSVDESL
                     AEPSATATPVDPDVPPDLGTPTRVLLIRHGITDYTAASRLDGRGGADPSLNDTGREQA
                     AAAGRATAHLLAGAPARVVTSSLARAKQTGQAVAAAIGVSPEVDRDFDEQNFGDWDGA
                     SIPDLVRDHPDELAAMRNDPDYARPGGESHTELAARVVAAFERVVATGGTTVVVCHRK
                     PIMVVLAHLLQIPHDTVWRLAAAPGSLTAVEVWDDGNASIAFTNRT"
     gene            complement(6632..7270)
                     /locus_tag="VGN19_07425"
     CDS             complement(6632..7270)
                     /locus_tag="VGN19_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HEV7195753.1"
                     /translation="MRLSELEDKAKALDSLLVRARTELGDVQREVAKAESDVQLVRDR
                     SARDQARLDSGTGTAKDLQALQHELESLARRQSELEDVELEVMERAEDAESAATQLTA
                     ERDTLATQIDEATAERDRTLRELDAEATSVAAPRPDIVAGVGEDLVALYEKIRAHSGG
                     LGAAPLRQRRCGGCQLELNNVEVNRIKAAPADEVLRCEECRRILIRTAESGL"
     gene            complement(7369..8205)
                     /locus_tag="VGN19_07430"
     CDS             complement(7369..8205)
                     /locus_tag="VGN19_07430"
                     /inference="COORDINATES: protein motif:HMM:NF013909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEV7195754.1"
                     /translation="MQALDGLYPPSSAQSWDQVGLVAGDPAQTVQRIVFAVDPTLSVI
                     EEARTLGADLVVTHHPLLLRGIHSVATTSAKGASVTALVVHDIALFVAHTNADVAQPG
                     VNDALAQACGLTETSPLAAVEGQNLGRVGELPETVRLADFAQRLYAALPRAAGGLRVA
                     GPPNAQVRRVAVMGGAGDDLFDHVRAAEADVYVTADLRHHPALEAREESRGGPPYLID
                     AGHWATESLWLGGAAQRLLAALTAAGFESSRVETHISTLRTDPWDFVVGAEPPQGNGG
                     TS"
     gene            complement(8231..8303)
                     /locus_tag="VGN19_07435"
     tRNA            complement(8231..8303)
                     /locus_tag="VGN19_07435"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8268..8270),aa:Val,seq:tac)
     gene            complement(8328..8783)
                     /locus_tag="VGN19_07440"
     CDS             complement(8328..8783)
                     /locus_tag="VGN19_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009074712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEV7195755.1"
                     /translation="MPVGALAPEFTLKDQNGQDFSLTDFRGRKNVVLVFYPFAFSGIC
                     TGELCEIRDNLGAFVSDDVQVLAISCDHMFSQRAWADKEGYFFPLLSDFWPHGGVAQS
                     FGVLDERAGAAVRGTFLIDTEGVIRWSLVNEIGQARDFAGYHLALKELG"
BASE COUNT         1235 a         3145 c         3042 g         1378 t
ORIGIN      
        1 cagcgctcta cccgtgcact cgggcgggcc gccctcgaac gtgcactgtc tgagcttgct
       61 ccaggtgggg tttacctagc cgagccagtc acctggcccg ctggtggtct cttacaccac
      121 cgtttcaccc ttaccccgat cactcggggc ggtctgttct ctgtggcact gtcccgcggg
      181 tcaccccggg tggctgttag ccaccacctt gccctgtgga gcccggacgt tcctcggcgg
      241 tgattgctca ccgacgcgac cgcctggccg actcatccgt ggccaaggat aggccacgta
      301 tgccgcgcgg ccgaccacga ccacgaccac acggcatacc cgctgtgcgg ggctaggccg
      361 tcacgatccg gaaccggacg gtgccggtgg cgacggtggc ttccaccagc tcgaccttga
      421 ctcgggtgcc gagctcgccg gctcccgcgg ccttcgagag gaccgcgggg tcctgaacct
      481 gcaccaacgc tccctctccg ttgtctcgca gatccaccac gacggcgtcg aacacctcac
      541 cgactcggtg ctgcagcgtg gccgcctcga ccgcgtcggc gcaggctcgc tcgaccgcgc
      601 cggcgacctt gtccgaagcg gccatgatct ggggcagcga cggcagcgcg tctcgggccc
      661 atgccggcac ctcgtgtccc tgcgagatgg cctcgcagat gaccagcgcg aaacggtcga
      721 cgagccggcg caacggtgcg gtcacgtgcg cgtacggcgc ggcgaccgcg gcgtgctcgt
      781 gatggtccgg gacagtcccg tcgaacgggg tgtacccggc accacggaac agcgccgtgg
      841 cctcgtggat cagggccagg tgggccgggt tggtgcggtc cagggtgcgc aggaactcgc
      901 cgtaggccat gccgtgctgc cactccacgc ccaacgcctt gctcgcctgg cgcagccggt
      961 tcacgacgcg ctcgtcgggc gccggcatgg tgcgcaggat gccgatcttg gctcgggtca
     1021 tcagctcggc cccggccatg cctgccatca aggagatctg cgcattccag tcctcgacct
     1081 cgagcggcgg ccggaaccgc acccggtagt ggccggactc gtccttctcg acctcctgct
     1141 cgggcatcgg caggctggcc ccgccccggc ggcgctcgag ctccagacgc ttgcggccca
     1201 cctcgcgcag cagtgtcagc cgttcgtcct gcgtcccggc ctccagagcc cgctggacgc
     1261 cgtcgtagtc gaggcggtcg gtgctgagga ccatcgcccg gtagacggcc gcgtcgcgaa
     1321 cctgcccatc ggcgtgcaac cgcagatccc acacgaacgc gggccggacc tggcccggca
     1381 acagactcgc ggcaccttca ccgagcactg cgggatgcaa gggagtccgt cggtccgggg
     1441 catagatcgt ctggccacgt ttgcgcgtct cgacgtcgac cgctcccccg gccatcacga
     1501 acgcgggaac gtcggcaatg gcgtaccgga cccgatagcc gtcgtcctcg cgctcgaggt
     1561 gcatcgcctg gtcgaggtcc atcgagccgg gcgggtcgat ggtcaggaag ggccgcgtcg
     1621 tctcgtcgcg ctcaggcaag gacggggctg cggcgcagcg ggtggcctcg gccagcacca
     1681 cgtcgcagaa cgtgtccggc acggacagct cgacccggat cgcctcgaac cgctcagcca
     1741 gcgctgacgc tgtcgcgtcc ctctggtcgg cgctcgggac ccggactctg agcttgcgca
     1801 tccgcatgcg cgccaaccta tccgcagagc ccgacctagg ctgtctgtcg tgctgatcct
     1861 gttaccgcct tcggagtcca agaccggccg cgcccgtggg cggcccatgg accacgagcg
     1921 tctgtcgttc ccggagctcg acgcgactcg ccggacggtc gcgcaggcgc tggcaaagct
     1981 cagcggtcac ccggacgcag cctcagtgct gcgggtcagc ccggctctgt ccgaccagat
     2041 cgcccgcaac ctgcagctgc acaccgcacc ggcccaaccg gcgtcgaagg tctactccgg
     2101 agtcctctac gacgcgctcg actacgccag cctcgacacg gcttcgaagc ggcgcgccaa
     2161 ccgatggctc gtcatcgtct cggccctcta tggcgcggtg cgcccgaccg acctcatcgc
     2221 gccctaccgg ctgtccatgg ccgtcaacct gcccggggtg ggcgcactgg ccagcgcatg
     2281 gaagccggag ctcgccgacg tgctgcccgc agccgccggc cgcggcctgg tggtcgactg
     2341 ccgatccagc acgtatgccg ccgcgtggac acctcgcgac gacctggccc gccgctgggc
     2401 gcaggtcaac gtccccggtg cgacgcacct ggccaagtac acccggggtc tggtggcccg
     2461 ccgcctgtgc gaggtcggcg tcgaggcccg caccgtcccc cagctcgcgg acctgttgag
     2521 cgacaccttc acggtcgccg tctccgcccc gtccagacca ggcaagccct gggtgctcga
     2581 cgcgacggcc cagtaggcac gcgcaggtga ccatcagtga gctcgccgac ctcgcccaac
     2641 gggtcgggcc cgtcctcgtc ttcttcatcg cgatcacggt ggtggcggag atcgccgact
     2701 cggcgggggt cttcgagaca gccggtcact gggccgcacg cgccggccat caccgcactg
     2761 cggtgctctg gctgctgttc gtcgtggtcg cggtggtctg cacggtgttc ctcagcctgg
     2821 acacgaccgc ggtcctgttg accccggtgg gactggcggt cgccgcccag ctggggatct
     2881 ccccgctgcc gttcgcgctc accacgctgt ggctggccaa caccgccagc ctcctgctgc
     2941 cggtctcgaa cctcacgaac ctgttgtcgt tgcaccagtt cgaccgcctt ggcgtcgggc
     3001 acgccgggta cgtccggctg gctgcgctgc ccgccgcagg cgccatcgtg ggcaccgtca
     3061 tcgtgctgtt cctatggcac cgccgggacc ttcgcggtcg gtacgagccc gacgtcgccc
     3121 ccgaaccgca cgacccggtg atgttgcgct gtgccggcgc ggtgtgcctc gccattggtc
     3181 cgctcttcgc cctcggcctg tcccctgcct gggtctcctc cgtcgcggcg gtggtgctac
     3241 tggtcgccag ctggacccgt gatcggggtc ggctgcgtca ggttgccgta ccgtggcggc
     3301 tcgccgtcgg ggtcgcgctg ctgttcgtgc tggtggacgt cgccctgcga cacgggctgg
     3361 gcccggtgct gaccgggctg gtggggacgg gcacgtctgc cggtgcgctg ctgcgcgtgg
     3421 ccggtggcgg cgccctcgct gccaacctcg ccgacaacct gccggcctac gtcgcgctcg
     3481 agtccgtcac cagcgacgcc ccgcagcggc tgatggcgct gctcgtcggc gtcaacgtcg
     3541 cgccgctggt cacgccctgg gcgtcgctgg cgaccctgct gtgggcgcaa cggtgccgcg
     3601 cccgaggggt caggatctcg ccctggcgcc tggcggccca gggtgcgacc tgtgccgtgg
     3661 ccgctggcgg tctggccgtc ggcgcactga tcctcgtggg ccgctgactc aggccgctga
     3721 ctcagggccg ctgacccaag gcgcgctgca ggtcttcgac gaggtccagg gggtcttcca
     3781 agcccaccga gatccgtacc gtgccgtcgg tgatgcccac ggcggcacgg gcctcgggcg
     3841 tcagccgtcg gtgggtggtc gtcgcggggt gcgtcaccat cgacttggag tcgccgaggt
     3901 tgttgctgat gtccacgatc cgcaggccgt tcatgaatgc gaacgcttcg gccttgccgc
     3961 catcgagctc gaacgtgacc accgtcccgc cgccgagcat ctgccgacgc gccagctcgt
     4021 actgcgggtg cgactccagc cagggataga ccactgtggt caccgagggg tgcgcctcga
     4081 gggcgcgggc gacggtgagg gcgttctcgg cctggcgctc gacgcgcagg ctcagcgtct
     4141 cgagcccctt gaccagcacc cacgcgttga acggggacat cgaaggaccg gtgtggcgca
     4201 taaggttctt gaccgggccg ttgatgaagt ccgcagtgcc cagaaccgcc ccgccgaggg
     4261 tccggccctg cccgtcgatg tgcttggtcg cggagtacac cacgatgtcg gcaccatgct
     4321 ccaagggcct ggagaagaca ggcgtcccga acacgttgtc gacgatcacc tgggcgccgg
     4381 ccgcatgggc caggtcgctg acggcccgca tatccacgag ctcctgcatg gggttgctcg
     4441 gggtctcgaa gaacacggcg gcggtcggct cggcaagcgc ctcacgccac tggtccaggt
     4501 ccggaccatc gacgaagacg gtctcgaccc cccacctcgg caggatctcg tcgaggatca
     4561 cgaaacacga gccgaacagc ccgcgcgagg agacgacccg gtccccctgg cccagcagcg
     4621 ccgccagcgc gacgaagacc gcggccatgc ccgaggcggt ggcgaagcag gcctgcgccc
     4681 cctccagctg acacagccgc tcctcgaaca tcgtcacggt ggggttgccg tagcgggagt
     4741 agatgaagtg ctcgacctcg tccttgaagg cggcctccgc ctgctcggca ctcgcgtata
     4801 cgaagccaga ggtcaggtac agcgcctcag cggtttcgtc gaagttgctt cggttgaggc
     4861 cgccgcgtac cgcgatggtg tccgggcgcc aggtgcgtgg ggacgagctg ttcgggggcg
     4921 agtcgttcgg gggcgagatg tcctcgggag tggagctcat ccctgcgtcc atggcagtcc
     4981 cgccaccttc cagcccgcga cggtgcggtg cccgaactgg tcgtgcgggc cctcgaagcc
     5041 gtccacaacg ttgtatgccg ggccgaggcc ggccgcggtg gcggcctggg ccgcggcgac
     5101 cgagcgcacc ccggagcggc acaggaagta gagggctgcg ccatcgggca ggcctacatc
     5161 ccgcagctgc tcgacaaagt cgccgttgac ggccccgtcc gggtacgtct gccattccag
     5221 gcacaccaca cgcttgccca gtaccgacag gtcgggcacg ccgacgtagt tccactcagc
     5281 cgcagtccgg acgtccacga gaaccgcgtc ctcgcccgcc gccagcgcgg catacgcctc
     5341 ctcgggctgc acatctcccg cataggtcat gcggcaagcc taggacggca gtcacatgtc
     5401 gagacgcgag ggtcagatgt tgggcagccc agtgccttgc aggtcagatg cagtgcggtc
     5461 agacgccaga gggctcaggt gcggttggtg aaggcgatcg aggcgttgcc gtcgtcccag
     5521 acctcgaccg cggtcagcga ccccggggca gctgccagcc gccagaccgt gtcgtgcggg
     5581 atctgcagca ggtgggccag gacgaccatg atgggcttgc ggtgacacac cacgacggtg
     5641 gtaccgcccg tggcgacgac ccgctcgaag gcagccacca cccgcgccgc cagctcagtg
     5701 tgcgactcac caccgggtcg ggcgtagtcg gggtcgttgc gcatggcagc gagctcgtcg
     5761 gggtggtccc gaaccaggtc ggggatgctt gcgccgtccc agtccccaaa gttctgctcg
     5821 tcgaagtcgc gatccacctc ggggctgaca ccgatggcgg cagccacggc ctgcccggtc
     5881 tgcttggcgc gggccaggga cgacgtcacc acccgagccg gggcgcccgc cagcaggtgt
     5941 gcggtggccc ggcccgcggc cgctgcctgc tcacgcccgg tgtcgttgag ggacggatcg
     6001 gctccgccgc gtccgtcgag tcgcgaggca gcggtgtagt cggtgatccc gtgccggatg
     6061 agcaggacgc gcgtcggcgt gccgaggtcg ggcgggacgt cgggatcgac gggggtggct
     6121 gttgcggacg gttccgccag gctctcgtcg acgctgccgt cctccagcgt gccgtcctcg
     6181 agcatgtggt cgacggtccg gccatccatc cccgtgttgg acagcgcgtc tgccgccttg
     6241 ttctcttcgc gtgggatcca ggtgaaggtc accgagccac cgcttcgact gagctcggca
     6301 agctcgtcgc gggcctcgag ggcgaggcgc cgcatgtcct ggtgcttgat cttccaccga
     6361 ccggccatct gctcgacgac gagcttggag tccatccgga cctcgatgtc ggcggccggg
     6421 tcgatgcggc gggcggcccg cagtccggcg atcaggccgg agtactcggc cacgttgttc
     6481 gaggctttgc ccagcggcgc ggcaccctcc cagaggaggg cctcggtcgc ggcatcccgc
     6541 accagggcgc cgtatccggc gacgccaggg ttgccgcggg aacccccgtc ggcctcgacg
     6601 atgagcgctc gacccacgcg acccgccaag ctcagagacc cgactcggcg gtgcggatca
     6661 ggatgcggcg gcactcctcg cagcggagca cctcgtcggc aggagcggcc ttgatgcggt
     6721 tcacctcgac gttgttgagc tcgagctgac acccgccaca gcgacgttgg cgcagcggcg
     6781 ccgcgccgag tccgccactg tgcgcgcgga tcttctcgta gagagccacc agatcctcac
     6841 ccacgccggc gacgatgtcg ggccgtggcg ccgccacgct ggtcgcctcg gcgtccagct
     6901 cgcgcagggt ccggtcacgc tcggccgtgg cctcgtcgat ctgggtcgcg agcgtgtcgc
     6961 gttcggcggt gagctgggtc gcggcggact ccgcgtcctc ggcccgctcc atcacctcga
     7021 gctcgacgtc ctcaagctcg gactggcgcc gggccagcga ctccagctcg tgctgaaggg
     7081 cctggaggtc cttcgcggtg ccggtccccg agtcgagccg ggcctggtcc cgcgccgacc
     7141 ggtcgcggac gagctgcacg tcggactcgg ccttggcgac ctcgcgctgc acgtctccga
     7201 gctcggtcct ggccctgacc agcaacgagt ccagcgcctt ggccttgtcc tcgagctcgc
     7261 tgagccgcac cagggcaggg atgctgcgtc gggcatgtgc gagctggtcc agcttggtgt
     7321 cgatggcttg caggtcgagc agtcgccact gacgggacgt atcggctttc aggacgttcc
     7381 tccattgcct tgaggcggct cagcacccac gacgaaatcc caggggtcgg tgcgcagtgt
     7441 tgagatgtgg gtctccaccc tagatgactc gaagccggcg gcggtcaacg cggccagcag
     7501 ccgctgcgcc gctcccccga gccacagcga ctcggtcgcc caatgtcccg cgtcgatgag
     7561 gtacggcggt ccgccgcgcg actcctccct cgcctccagg gccgggtggt gacgcaggtc
     7621 cgcagtcacg tagacgtcgg cttcggcggc ccggacgtgg tcgaacaggt cgtcccccgc
     7681 accacccatg accgccacgc gccgaacctg agcgttgggg ggtcccgcaa cgcggagtcc
     7741 accggccgca cgcggcaggg cggcatacaa ccgctgcgcg aagtccgcga ggcgcaccgt
     7801 ctcggggagc tcgccgaccc gacccaggtt ctgcccttcc accgctgcca ggggcgacgt
     7861 ctccgtcagc ccacaggcct gcgcgagcgc gtcgttgacg cccggctgcg cgacgtcggc
     7921 gttggtgtgc gccacgaaca gcgcgatgtc gtggaccacg agggcggtga cgctggcgcc
     7981 cttggcgctc gtggtggcga cgctgtgtat gccgcgcagc agcagcgggt ggtgggtgac
     8041 caccaggtcc gcgccgaggg ttcgcgcctc ctcgatgacc gagagggtgg ggtcgaccgc
     8101 gaacacgatg cgctggacgg tttgggccgg gtcgccggcg accaggccga cctggtccca
     8161 ggactgggct gaggacggcg gatagaggcc gtccagagcc tgcacgacat cggcgagagt
     8221 aggcagcacg tgggcccggc cgggctcgaa ccgacgacat ccacggtgta aacgtggcgc
     8281 tctaccaact gagctacagg ccctgaagac tgggggcagg gctgaggcta gccgagttcc
     8341 ttcagcgcga ggtggtaccc ggcgaagtcc cgggcctggc cgatctcgtt gaccagcgac
     8401 cagcggatga cgccctccgt gtcgatcagg aacgtccctc gcacggccgc accggcgcgc
     8461 tcatccagga caccgaagga ctgggcgacc ccaccatgcg gccagaagtc ggacaggagc
     8521 gggaagaagt acccctcctt gtcggcccag gcgcgctggc tgaacatgtg gtcgcacgag
     8581 atggccaaca cctggacgtc gtcgctgacg aaggccccca ggttgtcgcg gatctcgcac
     8641 agctcaccgg tgcagatgcc cgagaaggca aacgggtaga agaccagcac gacgttcttg
     8701 cggccccgga agtccgtcag tgagaagtcc tggccgttct ggtccttgag cgtgaactca
     8761 ggagcgagtg ctccgaccgg caggggcgtg cgggcactgg
//
LOCUS       DASYFY010000371         2093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1393955, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000371 DASYFY010000000
VERSION     DASYFY010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1393955"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2093
                     /locus_tag="VGN19_07445"
     CDS             <1..>2093
                     /locus_tag="VGN19_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fused acetyl/propionyl-CoA carboxylase subunit
                     alpha/methylmalonyl-CoA decarboxylase subunit alpha"
                     /protein_id="HEV7195756.1"
                     /translation="PVIGDLARSVRFRWFDQPLVDAERASVLGGVAAELTALANLPET
                     VERAARVDALAAIPEQIVQFLADRLERGVPEREPMLSVLVKRHYREHELTGHRELQIE
                     GRPFAVADYILDDRATHLVSSLGLVDELVPGSSLEVAVDHLVAQRAPEQEVVVDLYLA
                     WSQEPESPEDASRVLAERLGEIPFARQVRRVAIAVCPGGGRPVAYFTYRPASDGSMVE
                     DRLVRGVHPMVGRRLNLWRLRDFEVTRLEAPEDVLLYLCTAPGNEADQRLVALAQVRQ
                     LVVVRDEEGRVAALPHAERAIANCLEAIRRARSARGAAGARLDMNYVWVQIWPPIEAD
                     LNQLTALQGKISPLTAGAGVEEVLVQGRIATPDGASAPLAARFHYQPGSGVVTSVEQP
                     PTERLQPLDDYAQKVVRARRRGVVYPYELQAMIAGPGGTATEYDLDDTGTLVPVDRPY
                     GLNKAGIIAGVISSPTSRYPEGVTRVLLCGDPLKALGAVSEAECARVIAALDLAEELG
                     VPVEWFALSAGARISMDSGTENMDWVARALKRIVEFTQDGGEINIVVAGINVGAQPYW
                     NAEATMLMHTKGILVMTPDSAMVLTGKQSLDFSGGVSAEDNFGIGGYDRVMGPNGQAQ
                     YWAPDLASARDVLMAHYDHTYVHPGEAGPRRAQTSDPLDRDVTAYPHSMPDSGFTTVG
                     DIFSSVTNPDRKKAF"
BASE COUNT          306 a          733 c          731 g          323 t
ORIGIN      
        1 cccggtcatc ggcgacctcg cgcgcagcgt gcggttccgc tggttcgacc agcccctggt
       61 ggacgccgaa cgggcgagtg tcctgggtgg ggtcgccgcc gagctgaccg ctctggcgaa
      121 ccttcccgaa acggtcgagc gggcagcccg cgtggacgcg ctcgcggcta tccccgagca
      181 gatcgtgcag ttcctcgccg accgcctgga gcgcggtgtt cccgagcgcg agccgatgct
      241 ctcggtgctg gtcaagcggc actatcgcga gcacgagctc accgggcacc gcgagctgca
      301 gatcgaaggc cgacccttcg ccgtcgccga ctacatcctc gacgaccgcg ccacccatct
      361 ggtcagcagt ctcgggctgg tcgacgagct cgtcccggga tcgtccctcg aggtggcggt
      421 ggaccacctg gtggctcagc gtgcgcctga gcaggaggtc gttgtcgacc tgtacctcgc
      481 ctggtcgcag gagccggagt cgcctgagga cgcctcccgc gtcctggcgg agcgcttggg
      541 cgagatcccg tttgcacggc aggtgcgtcg cgtcgcgatc gcggtctgcc caggcggtgg
      601 tcggcccgtg gcgtacttca cctaccggcc cgcctcggat gggtcgatgg tggaggaccg
      661 actggtccgg ggagtgcacc ccatggtggg gcgccggctg aacctctggc ggctgcgtga
      721 cttcgaggtc acccggctgg aggctcccga ggacgttctg ctgtacctgt gcaccgcgcc
      781 cggaaacgag gcggaccagc ggttggtcgc ccttgcccag gtccgccagc tggtcgtcgt
      841 ccgcgacgag gagggaaggg ttgctgccct gccgcacgct gaacgggcca tcgccaactg
      901 cctggaggcg atccgccggg ccaggtctgc acgcggtgcc gccggcgcgc gactcgacat
      961 gaactatgtg tgggtccaga tctggccgcc catcgaggcc gatctcaacc agctgaccgc
     1021 gctgcagggc aagatctccc cgctgacggc cggtgcgggg gtggaagagg tgctcgtgca
     1081 gggtcggatc gcgaccccgg acggggcgag cgcgccgttg gccgccaggt tccactacca
     1141 gcccggctcc ggggtcgtga cgtccgtgga gcaaccgccc accgaacgcc tccagccgct
     1201 ggacgactac gcccagaagg tcgtgcgggc ccgccgccgc ggggtggtct atccctatga
     1261 gctgcaggcg atgatcgccg gtccgggcgg tacggcaacc gagtacgacc tggacgacac
     1321 gggcaccctg gtcccggtcg accgccccta cgggctcaac aaggccggga tcatcgccgg
     1381 ggtcatcagc tccccgacgt ctcgttaccc cgagggcgtc acgcgggtgc tgctctgcgg
     1441 tgacccgctc aaggcgctgg gtgctgtctc cgaggccgag tgcgcgcggg tcatcgccgc
     1501 cctcgacctc gccgaggagc tcggcgtgcc cgtcgagtgg ttcgcgctgt cggccggcgc
     1561 ccggatctcg atggactccg gcaccgagaa catggactgg gtggctcgcg cgctcaagcg
     1621 catcgtggag ttcacccagg acggtgggga gatcaacatc gtcgtggccg gaatcaacgt
     1681 cggcgcccag ccgtactgga acgccgaggc cacaatgctc atgcacacca agggaatcct
     1741 cgtcatgacc ccggacagcg ccatggtgct gaccgggaag cagtccctgg acttctccgg
     1801 tggggtgtcc gccgaggaca acttcgggat cggcggctat gaccgggtga tgggccccaa
     1861 cggccaggcg cagtactggg cccccgacct ggccagcgcc cgggacgtgc tgatggcgca
     1921 ctacgaccac acgtacgtcc acccgggcga ggccggtccg cgtcgcgccc agaccagcga
     1981 ccctctcgac cgcgacgtca cggcataccc gcattcgatg cctgactcgg ggttcaccac
     2041 cgtcggcgac atcttctcgt cggtcaccaa ccctgaccgg aagaaggcct tcg
//
LOCUS       DASYFY010000372         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1394061, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000372 DASYFY010000000
VERSION     DASYFY010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1394061"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1158)
                     /locus_tag="VGN19_07450"
     CDS             complement(<1..1158)
                     /locus_tag="VGN19_07450"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEV7195757.1"
                     /translation="MRKDGSPFWASVVITALRDEQGRLRGFGNVTRDITDKHQADLDL
                     QSQARMLELLGEVATASNSASSVEEALTAALEAFARFGDWQLAHAYLADYDDPSSFRH
                     SVWHEEGPGDFASFRAATEAAEAGEVTLPQGVFSSPTPIWLPTLEEEPRFGRVAEAER
                     AGLVAACAFPILVRDQPVGVLEFFSTEPHPTRADVLPVMHHLGTQLGRVIERDRAEHR
                     LARHARQLERLSDRLEMVLNSAGDGIYGLDADGTVTFINAAGARLVGLPVDLIVGRPA
                     TEVIGIEPGARQGDPQDCGPSGGGPQPIAADDGPRLWTGRHRSADGRLYDSESIAAPI
                     VSEGAVTGTVVVFRDISERRAVERLKDQFISVVSHELRTPLTGIRGALGLLG"
     gene            complement(1186..>1538)
                     /locus_tag="VGN19_07455"
     CDS             complement(1186..>1538)
                     /locus_tag="VGN19_07455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195758.1"
                     /translation="LAFRDGRVFERYSQPQRVDGATVGRVWSFRDVTDTRRLQADLRH
                     TQDNLGLLVGQVRDHAILNLDPTGHVITWNAGAQRIKGYVDHEILGQHFSVFYTQADQ
                     AAGKPQHELEVALA"
BASE COUNT          223 a          533 c          533 g          249 t
ORIGIN      
        1 cccgagcagc cccagggctc cgcgtatgcc ggtcagcggg gtacgcagct cgtggctgac
       61 cacggagatg aactggtcct tgagccgctc cacggcacgc cgctcgctga tgtcgcgaaa
      121 gaccaccacc gtgccagtaa cggcgccctc ggacacgatc ggcgccgcga tcgactccga
      181 gtcatacagc ctgccgtccg cgctccggtg tcgcccggtc cagagccgtg gtccatcgtc
      241 ggcggcgatc ggctgcgggc cacctccgct cggcccgcag tcctgcggat cgccctgccg
      301 ggctcccggc tcgatgccga tgacctccgt cgccgggcgc ccgacaatca ggtccacagg
      361 cagtccgacc aggcgggctc cggccgcgtt gatgaacgtg acagtcccgt cggcgtcgag
      421 gccgtagatc ccgtccccgg cagagttcag caccatttcg agccggtcgg agagccgctc
      481 cagctgtctc gcatgcctcg cgagccgatg ctccgcgcgg tctcgttcga tgacccggcc
      541 gagctgggtg cccagatgat gcatgaccgg cagcacgtcg gcgcgtgtcg ggtggggctc
      601 ggtgctgaag aactccagga cgccgacggg ctggtctcgc accaggatgg ggaaggcgca
      661 ggcggcaacc agaccagcac gctcggcttc ggcgacgcgg ccgaacctcg gttcctcctc
      721 cagcgtgggc agccagatcg gggttgggct ggagaagacc ccctgcggga gcgtgacctc
      781 gccggcttcg gcggcctcgg ttgccgccct gaaactggca aagtcgccgg ggccctcctc
      841 gtgccacacc gagtggcgaa acgacgatgg gtcgtcatag tcggccaggt aggcatgggc
      901 gagctgccag tctccgaacc gggcgaacgc ctccagggcc gcggtgagtg cctcctcgac
      961 actggaggcc gagttcgacg ccgtcgctac ctcgcccagc agctcgagca tgcgtgcttg
     1021 cgactgcagg tcgaggtccg cctgatgttt gtcggtgatg tctcgcgtga cgttgccgaa
     1081 cccgcgcagc cgcccctgct cgtcgcgcag ggccgtgatc accacgctgg cccagaacgg
     1141 tgacccgtcc ttgcgcaccc gccatccctc gtcggtgatg tgtccttagg cgagggcgac
     1201 ctccagctcg tgctgtggtt tgccagccgc ctggtccgcc tgcgtgtaga agacggagaa
     1261 gtgctgcccg aggatctcgt ggtcgacgta gcccttgatc cgctgagcgc cggcgttcca
     1321 ggtgatgacg tgcccggtgg ggtccaggtt gaggatggcg tggtcacgga cctggccgac
     1381 cagcaggccc aggttgtcct gggtgtggcg caggtcggcc tgcaggcgcc gtgtgtcggt
     1441 gacgtcacga aagctccaca cccgccccac ggtcgcgccg tcgacgcgct ggggttggga
     1501 gtaccgctcg aagacgcggc cgtcccgaaa ggcgagct
//
LOCUS       DASYFY010000373         1592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_919446, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000373 DASYFY010000000
VERSION     DASYFY010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_919446"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VGN19_07460"
     CDS             complement(<1..366)
                     /locus_tag="VGN19_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195759.1"
                     /translation="MMGPTSNVGGGRARRGRAAFRSPHYLVAADHQPRVRRASDVTSV
                     IVGALLVGWAIRAHGQGADQESSTATLMTLPSWITSALHLVSTAVLVYTVGLLVVLAS
                     SRRAGALRDVLAAGVLAALG"
     gene            complement(592..1038)
                     /locus_tag="VGN19_07465"
     CDS             complement(592..1038)
                     /locus_tag="VGN19_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018773370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6325 family protein"
                     /protein_id="HEV7195760.1"
                     /translation="MTVNVDELGPVDWLVVEFPGSKLNGEVAPILKDYVDRDLIRVLD
                     LLFLKKDEDGSVEAFEASDLDDSEIGELRSYEKELAMLLSEQDVADLMETIEPGSSAA
                     VLVWENLWAAPFGAAVRHAGGQLVASGRIPIQAIVAAMESDEEEGA"
     gene            1294..>1592
                     /locus_tag="VGN19_07470"
     CDS             1294..>1592
                     /locus_tag="VGN19_07470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195761.1"
                     /translation="MSPLTRPRFVRLGALGIAASLAALATACSWGSTGGMVVGSGDVV
                     SETRSVPEFTAVSAGGGIQVELATGPQRVVIKAQPNILAITTAEVSGSRLTLGTT"
BASE COUNT          245 a          576 c          536 g          235 t
ORIGIN      
        1 gcccagggcc gcgagcaccc ccgctgccag gacgtcacgc aaggcgcctg cccggcgcga
       61 agacgcgagc acgaccaaga ggccgaccgt gtagacgagg accgcggtgc tgacgaggtg
      121 gagcgccgag gtgatccatg acggcagcgt catgagagtg gccgtcgagg actcctggtc
      181 tgcgccctgt ccatgcgctc tgatcgccca accgacgagc agggccccga cgatgacgga
      241 ggtcacgtcg ctcgctcgcc ggacccgcgg ctgatggtcg gcggcgacga ggtagtgagg
      301 gctgcggaat gccgctcgcc cgcggcgggc gcgccctccg ccgacgttgc tcgtcggccc
      361 catcacaccc gccggaacgg taggcgtgga cagcgtgcca ggacacgccg cgtggggcgg
      421 cccgccacca caggccaccc cacgcccgac atgatcgatc agcggcggtc gcggcggtct
      481 tcgcgccggt cttcgcggcg ctcaccgcga cggtgcatcc cgtgcgcgac cacgacggcg
      541 ccaccaaccg cggccaccgt ccttctcctg cgtctggctg ccagtggcat gtcaggctcc
      601 ttcctcttcg tcggactcca tggcggcgac gatcgcctgg atggggatgc gcccagacgc
      661 caccagctgg ccccccgcgt gcctgacggc ggcgccgaag ggtgcagccc acaggttctc
      721 ccacacgagg acggccgccg agctgcccgg ctcgatcgtc tccatcaggt cggcgacgtc
      781 ctgctcactg agcaacatcg ccaactcctt ttcgtacgaa cggagctcgc cgatctcgct
      841 gtcatccagg tcggacgcct cgaaggcctc cacgctgccg tcctcatcct tcttgaggaa
      901 aagcaggtcc aagacccgga tgaggtcgcg atccacgtag tccttgagga tgggggcaac
      961 ctcgccgttg agcttgctgc cagggaactc cacgacgagc cagtccaccg gaccgagctc
     1021 gtcgacgttg accgtcatgt catcttctcc ttgtcgtgtg cgtccagatg tcgttccgta
     1081 tgccggagcg cgagacccga ggcccgttca cggccgtcct ctggacgacc accacgtcgt
     1141 ggcgcagccc ccttcgcgac cggctgtggt ggcgacaacg ctaggagcgg tgcggaggcg
     1201 agtcatcatc cgcaggggat gaccccgaga tgcgggacct tgggccctgc cctccggacg
     1261 ctgccgcccg cacgctgggt cagggaggca accatgagcc cactgaccag accacggttc
     1321 gtgcgactgg gcgctctcgg gatcgccgcg agcctcgccg ctctggcgac cgcctgcagc
     1381 tggggctcga ccggtggcat ggtcgtcggc tcgggcgacg tcgtgtccga gacccgcagc
     1441 gtgccggagt tcacggcggt gagcgcgggc gggggcatcc aggtcgagct ggcgacggga
     1501 ccgcagcggg tcgtcatcaa ggcgcagccg aacatcctcg ccatcaccac ggccgaggtg
     1561 tcgggctcac gcctcaccct cggcacgacc ag
//
LOCUS       DASYFY010000374         1525 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_762549, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000374 DASYFY010000000
VERSION     DASYFY010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762549"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VGN19_07475"
     CDS             complement(<1..600)
                     /locus_tag="VGN19_07475"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEV7195762.1"
                     /translation="MIDETGPYLPRYGERSLAEVVPSLLSALGVRDMANPLEVPAATS
                     ACLLLVDGLGWELLTTYAAEAPFLASLAASSEPITAGFPATTCVSLVSLGTGTASGVH
                     GIVGYTFAVPEVGLLNALTWRTHDGGQPQDLRERLPPHQVQPMRTMVQQATAAGVDVT
                     LAAAPFQARSGLTAAAFGGGRFDPVVAFGDLAAALVSAKP"
     gene            702..>1525
                     /locus_tag="VGN19_07480"
     CDS             702..>1525
                     /locus_tag="VGN19_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011775543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEV7195763.1"
                     /translation="MTYVAVPDRYQRMAYRRCGRSGVLLPTVSLGLWHNFGDTEALDT
                     QRAIVRRAFDLGITHFDLANNYGPPYGSAEANFGRLLTADLRPYRDEMFISTKAGYDM
                     WPGPYGEWGSRKYLLASLDQSLARMGLDYVDVFYSHRFDPDTPLEETMGALDTAVRSG
                     RALYAGISSYSPERTEQAAQLLRELGTPLLIHQPSYSLLNRWIEGRLLSTLDEVGAGC
                     IVFSPLAQGMLTDKYLNGIPEGSRAARDSSLTPELLTERNLEHVRALNALAQRRGQS"
BASE COUNT          249 a          537 c          504 g          235 t
ORIGIN      
        1 cggcttcgcc gagaccagtg ctgccgcaag atccccgaac gccaccacgg ggtcgaagcg
       61 tccgccaccg aacgcagcgg cagtcagacc ggaccgcgcc tggaagggag ctgctgccag
      121 ggtgacgtcg accccggcag cggtggcctg ctgcaccatg gtccgcatcg gctgtacctg
      181 atgcggtggc agtcgttctc gcaggtcctg cggttgacca ccgtcgtggg tacgccaggt
      241 cagcgcgttg agcaggccga cctccggaac ggcgaacgtg tatcccacga tcccgtgcac
      301 gccggacgcc gtcccggtgc cgagcgatac caggctcaca caggtggtgg cagggaaccc
      361 ggctgtgatc ggctctgacg aggccgcgag ggacgccagg aacggggcct cggccgcgta
      421 cgtcgtcagc agctcccacc ccagtccgtc cacgagcagc aggcacgcgc tggtcgcggc
      481 ggggacctcg agcgggttcg ccatgtcgcg gacgccgagg gcggacagca gcgaaggcac
      541 cacttcggcc agcgagcgct cgccgtagcg cggcaggtac ggccccgtct cgtcgatcac
      601 ctgaccatca tggaccggac agctgcgccg gcgcccggag ggtggagggt ggagcggctt
      661 tccgccgcag tcagggtgac gcggcggcat aatcaccagt catgacctat gtcgctgttc
      721 ccgatcgata tcagcggatg gcatatcgcc gctgcggccg tagtggggtg ctgctaccga
      781 ccgtctcctt gggcctctgg cacaacttcg gcgacaccga ggcgctggac acccagcgcg
      841 cgatcgttcg tcgggcgttc gacctcggca tcacccactt cgacctcgcg aacaactacg
      901 ggccgccgta cggctctgcc gaagccaact tcgggcggct gctcaccgct gacctccgcc
      961 cgtaccgcga cgagatgttc atctcgacca aggctggcta cgacatgtgg cccgggccgt
     1021 acggggagtg gggctcgcgc aagtatctgt tggccagcct ggaccagtcg ctggcgcgga
     1081 tggggctcga ctacgtcgac gtcttctact cgcaccgatt cgatccggac acacccctcg
     1141 aggagacgat gggggcgctg gataccgcag tgcggtccgg gcgggcgctc tacgccggca
     1201 tctcctcgta ctccccggaa cgtaccgaac aggcggccca gctgcttcga gagctcggca
     1261 ccccgctgtt gatccaccaa ccgtcgtact ccctgctcaa ccggtggatc gagggccgtc
     1321 tgctcagcac gctcgacgag gtcggcgccg gctgcatcgt attctccccc ttggcgcagg
     1381 gcatgctcac cgacaagtac ctcaacggca ttcccgaggg atcacgcgcg gcgcgggact
     1441 cctcgctgac cccggagctg ctcacagaac gcaacctcga gcacgtacgt gcgctcaacg
     1501 ccctcgcgca gcgtcggggg cagtc
//
LOCUS       DASYFY010000375         2409 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_131858, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000375 DASYFY010000000
VERSION     DASYFY010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131858"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..1152
                     /locus_tag="VGN19_07485"
     CDS             187..1152
                     /locus_tag="VGN19_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010204721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195764.1"
                     /translation="MIEAAGLTKRYGTTLAVDRLTFTVRPGRVTGFLGPNGAGKSTTM
                     RMMLGLDAPTSGTVTLDGRAYGSIRRPLHEVGAVLEVRAVHPGRSARNHLLSLAQSNG
                     IPARRVAEVLDLVGLEGVARRRAGKFSLGMSQRLGLAAALLGDPPVLLCDEPVNGLDP
                     EGIHWIRTLLRTLAAEGRTVFVSSHLMSEMALTADHLIVIGQGRLLADASTTDVIAAS
                     SHNHVFVRTPDPTTLTAVLRHAGATVTSTDTDGRGGEPGLQVTGLDSGAIGDLAARHG
                     IAVHELAHQDASLEDAYLQLTRDHVDFRTDSRHDSRHDEQTMDPA"
     gene            1149..1973
                     /locus_tag="VGN19_07490"
     CDS             1149..1973
                     /locus_tag="VGN19_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195765.1"
                     /translation="MTITRSGAVPITRRAPDSIGFTNLLRSEWTKLRSVRSTYWTAGL
                     AVLASIALSIVISARTANNISHGVGSATDLDSTLTSLTGLYIAQVAIGALGVLTISSE
                     YSTGMIRATLTAVPQRRAMLAAKGLVFAAATLIAGEIMSFTAFGIGQALLARVHAGAS
                     LSQPGVLRATIGGGLYLTVVGLLGFGLGALVRHTAGALSAFFGVLFALTALTDLLPTH
                     LRNQVINYLPANAGSQILTVLHPPGALAPWTGLGVLLLYAVAATTAATILITRRDT"
     gene            2147..2377
                     /locus_tag="VGN19_07495"
     CDS             2147..2377
                     /locus_tag="VGN19_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195766.1"
                     /translation="MAPRHWLPEGIISMRRTGVVVLGVVIALAGLLFTLQGVGVITGS
                     AMSDTTFWSVAGPVIIVVGLALAVVGWRGRAR"
BASE COUNT          372 a          930 c          726 g          381 t
ORIGIN      
        1 cgagaccggg tacaggccgt cgtcctcgcg tacgagtcgg gcgtcgtcct ccccggaacc
       61 ggtccggggc ccacgccccc cgtgccgtga cgcgcggcgg tctccccctc gagtagcagt
      121 cgcggaccga ttccggatac ctcaggccga cgcggcgagc cgaccccgcg gcctagcgtc
      181 gaattcatga tcgaagcagc cggactgacc aagcgatatg gcactacgtt ggccgtcgac
      241 cggctgacgt tcacggtccg gcctggtcgt gtgaccgggt tcctgggccc gaacggcgcc
      301 gggaagtcca ccacgatgcg gatgatgctc ggcctggacg cccccaccag cggaacggtg
      361 accctcgacg gacgagcgta tggatccatc cgccgccccc tgcacgaagt cggagccgtc
      421 ctggaggtcc gggccgtgca ccccggccgg agcgcccgca accacctgct ctccctcgcc
      481 cagagcaatg ggatcccggc ccggcgcgtc gccgaggtgc tggacctcgt cggcctggag
      541 ggggtcgcgc gacgccgcgc gggaaaattc tcgctcggga tgagccagcg cctcggactt
      601 gccgcggccc tactcggcga cccgccggtc ctgctctgtg acgaaccggt caacgggctc
      661 gatcccgagg gcatccactg gatccgcacc ctgctacgca cgctcgccgc cgaaggccgc
      721 accgtcttcg tgtcgagcca cctgatgagc gaaatggccc tcaccgccga tcacctcatc
      781 gtgatcggtc agggcaggct gctcgccgat gccagtacca ccgacgtcat cgccgcgagt
      841 tcccacaacc atgtcttcgt ccgcaccccg gacccgacca ccctgaccgc cgttctccgc
      901 cacgccgggg ccaccgtcac cagcacagac accgacggca ggggtggcga gccgggtcta
      961 caggtcaccg gcctcgacag tggggcgatc ggcgacctcg ccgcccgcca cggcatcgcc
     1021 gtgcacgaac tcgcccacca ggacgcgtcg ctcgaggacg cctacctgca actcacccgc
     1081 gaccacgtgg atttccgcac cgacagcagg cacgactcgc gtcacgacga gcagacaatg
     1141 gatcccgcat gaccatcacc cgtagcggcg ccgtcccgat cactcgccgg gcgcccgaca
     1201 gcatcggctt caccaatctg ctccgctcgg agtggaccaa gttgcgcagc gtccgctcca
     1261 cctactggac cgcaggcctg gcagtgctcg cttcgatcgc gctcagcatc gtcataagcg
     1321 cccgcaccgc caacaacatc agccacggcg tcggcagcgc gaccgacctc gactcgaccc
     1381 tcaccagcct caccggcctc tacatcgccc aagtcgccat cggtgccctc ggcgtgctga
     1441 ccatcagctc cgaatacagc actgggatga tccgcgcgac tctcaccgcc gtcccccaac
     1501 gccgagccat gctcgccgcg aaaggcctcg tcttcgccgc cgccactctc attgcgggcg
     1561 agatcatgag cttcactgct ttcggcatcg gccaggcctt gctcgcccgg gtccacgccg
     1621 gtgcctcgct gagtcaaccc ggggtgctcc gtgccaccat cggcggcggt ctctacctga
     1681 ccgtcgtcgg cctactgggc ttcgggttgg gcgctctcgt gcgccacacg gccggcgccc
     1741 tgtccgcctt cttcggagtc cttttcgcgc tcacggccct caccgacctg ctcccgaccc
     1801 acctgcgcaa ccaggtcatc aactatctgc ccgcgaacgc cggcagccag attctcaccg
     1861 tccttcaccc gccaggagcc ctcgcaccct ggaccgggct cggcgtgctc ctcctctacg
     1921 ccgtcgccgc caccacagct gcgacgatcc tgatcacccg ccgcgacacc tgagtcgaat
     1981 ccaatcccct cacacctgca cgaaggccca cagcgcacac gctgtgggcc ttcgctccgt
     2041 cagcagatcg gcgagcgggg cgtggaccgg tgaaccgaag cccccgatct tccgtagtga
     2101 tggtcggctg catacttttg ccggtgaccg gcgcaggtgc gtgctggtgg ctcctcgcca
     2161 ctggctgccg gaggggatca tctcgatgcg caggactggt gtagtcgtgc tgggcgtcgt
     2221 cattgccctg gccggcctac tgttcacttt gcaaggggtc ggggtgatca caggcagcgc
     2281 gatgagcgac acgaccttct ggtcggtcgc cggcccggtc atcatcgtgg tcggcctggc
     2341 cctcgccgtc gtcggatggc gtggccgcgc gcgctgacgc tcatcgagcc ggacgaggtg
     2401 cgacatgag
//
LOCUS       DASYFY010000376         5445 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_78982, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000376 DASYFY010000000
VERSION     DASYFY010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5445
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78982"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VGN19_07500"
     CDS             complement(<1..527)
                     /locus_tag="VGN19_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HEV7195767.1"
                     /translation="MTTATTTPPLSAGARGRVHGWWVRIGAWPSGWRWALAVALILAA
                     AAIPVLRYLVFWPIDQWQVDVEVYREAGVSILTGRPIYSAMTEAPQLLPFTYPPFAAV
                     LAVPLAFLPFGVVGWLWTLAQIAATTAIVWYAGWRLIHRAGPWAPIVLALLTIPMLWL
                     QPVSDGIRFGQVNAF"
     gene            complement(2738..3505)
                     /locus_tag="VGN19_07505"
     CDS             complement(2738..3505)
                     /locus_tag="VGN19_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7195768.1"
                     /translation="MTPRVAAVIPAKDEAMRIAATVQAVRRIPQIDLVVVVDDGSRDG
                     TAELARSAGAEVVRHARNRGKAAALSSGAAYVARQESVESHGDGADAAAPPRLLLFVD
                     GDLEDSAENLSVLVDPVLRGRADMTIATLPPQRTPGGGRGLVVRLARQGIAELTGFEA
                     VQPLSGMRCLTRQAFESASPLARGWGVEVGLTVDVLLARLRVEEVPCDLHHRVSGVDW
                     RGQLHRARQYRDVALALAGRRARRRLRRASRPRALRG"
     gene            complement(3508..4398)
                     /locus_tag="VGN19_07510"
     CDS             complement(3508..4398)
                     /locus_tag="VGN19_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5926 family protein"
                     /protein_id="HEV7195769.1"
                     /translation="MGKASRRRKGADHGSVSVRVEPAPFVRRPFEGLPGETDWVAMRE
                     ILPAATAVVSFASGKAPTGSADRATVATVLPMAWPGLHRADGTVFFCTQSGSTSGDAS
                     RDLATSLLAAASAETGTPVLTTTAATAESPRLQDLIDVAAPLEVTVHNGFEFWVGDSE
                     LDEEAQASLERANESVIPTTKMAAASSAYWCRIGERTHIRLVLPDDEDAATDALARLH
                     AGGSSSLGGDTRLLGAFRACGLLVPVWDLDAQLEAADYEEQLAAFMQRYAAALTSEET
                     LTAEERRARSGLLSRQVTLR"
     gene            complement(4435..4905)
                     /locus_tag="VGN19_07515"
     CDS             complement(4435..4905)
                     /locus_tag="VGN19_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7195770.1"
                     /translation="MTTPSRRDRPARSVPATPRGGEVSRTIRVLWNAASVAEVRKVVV
                     DDLQTRDVTTTVVDEAEIVVSELVSNAVRHARPLPDGMLRVHWKVKAGVVEVEVTDGG
                     GDSTPRPAPRTVWAPSGRGLRIVRSLAHEWGVTEDRNGSTVWASLGGPSRRRSH"
     gene            complement(4954..>5445)
                     /locus_tag="VGN19_07520"
     CDS             complement(4954..>5445)
                     /locus_tag="VGN19_07520"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HEV7195771.1"
                     /translation="RHLLTTVTAHSDRPLGLAIETKHPTRYAGLVERELARMLAEFDL
                     DGPPGPGQPWVRMMSFSQLAVQRMRQLCPLVPAVFLIEESVPIRFRDGSLPRGVNTVG
                     LDINIVRRWPETVERQRRRGHEVFVWTVDEPADVSLCLQVGVDAIITNHPRAVLDAVR
                     GPR"
BASE COUNT          739 a         1958 c         1932 g          816 t
ORIGIN      
        1 atgaacgcgt tgacctggcc gaaccggatg ccgtcggaca cgggctgcag ccacagcatc
       61 gggatggtca acagggccag cacgatcggg gcccaggggc cggcgcggtg aatcagccgc
      121 cagccggcat accagacgat cgcggtggtc gctgcgatct gggcgagcgt ccacagccac
      181 cccacgaccc cgaacggtag gaacgccaac ggcaccgcga ggacggccgc gaacggcggg
      241 taggtgaagg gcagcagctg gggcgcctcg gtcatggcgg agtagatcgg tcgcccggtg
      301 aggatggaga ccccggcctc gcggtagacc tcgacgtcca cctgccactg gtcgatcggc
      361 cagaagacca ggtagcgcag gacggggatc gcggccgccg cgagaatcag ggccacggcc
      421 agcgcccacc gccagccgct cggccacgcg ccgatccgga cccaccaccc gtgaacccgt
      481 ccgcgggctc cggcggacag aggtggggtc gtggttgcgg tggtcacgcc accattcttg
      541 cgtgtcgctg acccttagcc tgtaccggtg acccgacgcg ccccgcatct gctcgccggc
      601 cctcgagtga atcccctccg tggcgcgctc ataagcctgt tcgtgagcgt gggcgtcgcg
      661 tgcctcagcg tcgtctgggc ggcgagcccg tcttcggccg caacccggcc ggcatcccca
      721 gcgcccagca gtggcagcct cagcccgacg atcctcatcg gtacgggtgg gctgacctgg
      781 agcgacgtct ccgccggtgc gacgcctgcg ttgtggtcgc tccttcgcga cgggtcgagc
      841 gccgcgctgt cgatccagtc ggtgttcatc aacacctgcc cggtcgacgg ctggctcacc
      901 atgtccgcag gcaaccgcgc cgcggcgccc ggcccaggca gcgacggttc tcggacagca
      961 ggcgatccct gcgccccgct gcccgcggtg accaatggcg ccgtgcccgg ctgggacggt
     1021 tacctcaaag ccgctgcggc caccaagttc gactcacggc tcggcaccct gggtgatcag
     1081 ctcgccagca gcgggcagtg catccaggcg gtggggcccg gtgcgggcct ggccgctgcc
     1141 accacctcag gcgcagtgcc tcggtatgcc gcgttcgacc cggcccgact gcccggcttg
     1201 ttgtcaggat gccgcgtgac cttggttgac gtgggttcgc tgcgcgaccc ggccgacgtg
     1261 gcgccgggcg agacggtgcc ggcggacagc cggagtgttc agctcagggc catcgacgcc
     1321 cgcatcggcc aggtcctggc cgcggccccc caaggctcca acctgatggt ggcaagcgtg
     1381 gccgacgccg gtcgcaccga acggctgggg ctcgtggcgg ccaaggggcc cgacttcgcc
     1441 tccggaacct tgtggtcctc gtccactcgg cagtcgggac tcgcccagct cgccgacctc
     1501 acggtgaccc tgctcgcggc cggcagggct ccggtgcccg ccgccctggg aggcgccacg
     1561 ctgaaggccc aggccgggga cggcagctcc gtggccgcgg cctcttcgcg cctgcaggcc
     1621 ctcgtggacg aggaccaggc cagtcacgag gtccacgcgc tcgtcccacc gttcttcgac
     1681 tggctggtcg ggagccagct ggcggtctat ctcctcgccg ccctgttctg gcgacggaag
     1741 tacgggtcca cccagctgcg cgggagggtc ctgcgcgtgg ttcgcgacgt cgcactggtg
     1801 gccgcggcgg tgcccgtgtc gacgttcctg gccaacctgt tcccctggtg gcggttccag
     1861 ccgcccatgg tctcggtggt cgcctcggtg gccgtcttcg cggccgtgtt gtgggcggtc
     1921 gcccggctgg ggccgtggcg ccgggtcgtc agcggcccca tggcggtcat ctcgctcgcc
     1981 acgctgctgg tactcagcgt cgacgtcctg ctcggatctc acctacagat gtcctcgctg
     2041 ctcggccttc agcccgtggt cggcggccgc ttctacggcg tcgggaacgt caccttcgcc
     2101 ctgctcgcca ccgctgcggt cctgctggcc gtcgccatct ccgggcgcta cgtggcacgg
     2161 ggccggtcac gcgtcggcgc ggtctgggtc atcgcgatcg gcgtggtcgc cctcgtcgtg
     2221 gacggggcgc cttggtgggg agcggacggc ggcggccccc cggcactgct gcccggtctg
     2281 gcctatctcg tgctggccat cctcggggtc aggatgacct ggaagcgcgg gctgctggtg
     2341 tcggtcgcca ccgtcgtgct cttcctgctg gtcggcttcc tggactggct ccggccggcg
     2401 cagtcacgat cgcacctggg gcgcttcatc cagtcgatga tcgacggcgg cgcctgggac
     2461 atcgtctccc gcaagctcga cgcgaacgtg gccatcctgc agagcagtcc gctggcggcg
     2521 ctcgtcccgg tggctctggt gtgcgcgatc tatctgttgg cgaggccgag ctcctgggcg
     2581 tcgcgggtcc tgcagcggtc ctacgacgcg tgccccaccc tgcgccctgg cctgatcgcc
     2641 ctgctcgtga ctctgaccat cgggttcgcg atcaacgact ccggggttgc gatcccggcc
     2701 aacggcgccg tgttggcgat gccgctgctc atcgcgctca gcctctcagt gctcgaggtc
     2761 gagacgcgcg ccggagccgc cgtcgagccc gccgacctgc cagcgccaag gcgacgtcgc
     2821 ggtactgcct cgcccggtga agctggcctc gccagtcgac cccgctgacc cggtggtgca
     2881 ggtcgcaggg gacctcctcg acccgcagcc gcgccaggag cacatcgacc gtgagcccga
     2941 cttcgactcc ccagccgcgg gcgagaggcg aggctgactc gaaggcctgg cgggtgaggc
     3001 atcgcatccc cgacagcggc tgcacggcct cgaacccggt gagctccgcg atcccctgac
     3061 gggcaaggcg cacgaccaac cctcgaccgc cgcccggagt ccgttgcggg ggaagggtcg
     3121 cgatcgtcat atcggcacgg ccgcgcagga cggggtccac cagcacggac aggttctcgg
     3181 cggagtcctc caggtcgccg tcgacgaaca gcagcagccg tggcggagcg gcggcgtccg
     3241 cgccatcacc gtggctctcg accgactcct gccgggcgac gtatgccgcc ccggaggaca
     3301 gcgccgcggc cttgccacgg ttccgcgcgt gccggacgac ctcggccccc gccgatctgg
     3361 ccagctccgc cgtgccatcg cggctgccgt cgtcgacgac gaccacgagg tcgatctggg
     3421 ggatccgccg aacggcctgg accgtggctg cgatgcgcat cgcctcgtcc ttggccggga
     3481 tcacggctgc tacacgtgga gtcacggtca gcgcagcgtg acctggcggc tcaacaggcc
     3541 cgatctggcg cgtcgttcct cggcggtgag ggtctcctca gaggtgagcg cggcggcata
     3601 ccgctgcatg aacgccgcga gctgctcctc gtagtccgcc gcctcgagct gggcgtcgag
     3661 gtcccagaca ggaaccagga ggccacaggc ccggaaggca ccgagcaggc gggtgtcgcc
     3721 acccaggctg ctgctccccc cggcgtggag ccgcgccagc gcgtcggtgg cggcgtcctc
     3781 gtcgtccggc aggacgaggc ggatgtgggt gcgttcgccg atccgacacc agtaggccga
     3841 ggaagctgcc gccatcttcg tggtggggat gaccgactcg ttggcccgtt cgagggaagc
     3901 ctgggcctcc tcgtcgagct cgctgtcacc gacccagaac tcgaagccgt tgtgcacggt
     3961 gacctcgagg ggcgccgcca cgtcgatcag gtcctgcagc cgcggcgact cggccgtggc
     4021 agccgtcgtg gtgagcacgg gggtacccgt ctcggccgag gcggcggcga gcagggacgt
     4081 ggcgaggtca cgcgaggcgt cgccggacgt cgagccggac tgggtgcaga agaagacggt
     4141 gccgtcggcc cgatgcagac cgggccaggc catcggaagc accgtggcga cggtggcgcg
     4201 gtcagcggac cctgtcgggg ccttgccgct ggcgaagctc accactgccg tcgccgcggg
     4261 caggatctcg cgcatcgcca cccagtcggt ctcgcccggc agcccctcga aggggcggcg
     4321 cacgaacggt gcgggctcga cgcgaacgga gacggaaccg tggtctgcgc ccttgcgacg
     4381 ccgtgatgcc ttacccatgc gccaaaccct agtggccccg atcagccggt cgagtcagtg
     4441 gctgcgacgc ctcgagggtc caccgaggga ggcccagacg gtggagccgt tgcggtcctc
     4501 ggtgaccccc cactcgtggg ccaggctgcg cacgatgcgc aggcctcggc ccgatggtgc
     4561 ccagaccgtg cgcggggccg ggcgaggcgt gctgtcgcct ccgccgtcgg tgacctcgac
     4621 ctccaccacg cccgccttga ccttccaatg cacccgcagc atgccgtcgg gcaggggtcg
     4681 ggcgtggcgg acagcgttgg acaccagctc ggacaccacg atctcggcct cgtcgacgac
     4741 ggtggtcgtc acgtcgcgcg tctgaaggtc gtccacgacc accttgcgaa cctcggcgac
     4801 ggacgcggcg ttccagagca cccgaatcgt gcgcgacacc tcaccgccac gaggggtcgc
     4861 cggaacggac cgggccggcc ggtcgcggcg agagggggtg gtcatcctgg gtcctaggtc
     4921 ccttcgggag gcggtggaga gctcgcaggg agactaccta ggacctcgca cagcgtcgag
     4981 aaccgcccgg gggtggttgg tgattatggc atccaccccg acctggaggc agagcgagac
     5041 gtcagcgggt tcgtcgaccg tccagacgaa cacctcgtgc ccgcggcgac gttgccgttc
     5101 gaccgtttcg ggccagcgac gcacgatgtt gatgtcgagc ccgacggtgt tcaccccccg
     5161 cggcagggac ccgtcgcgga agcgaatcgg caccgactcc tcgatgagga acaccgccgg
     5221 caccagcgga cacagctgtc gcatgcgttg cacggctagc tggctgaacg acatcatccg
     5281 cacccacggc tggcccggac cgggcggccc gtcgaggtcg aactcggcca gcatccgggc
     5341 tagctcacgc tccacgagcc cggcatacct cgtcggatgc ttggtctcga tcgccaggcc
     5401 caacggccgg tccgagtgtg ccgtcacggt ggtcagcagg tggcg
//
LOCUS       DASYFY010000377         2092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_605729, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000377 DASYFY010000000
VERSION     DASYFY010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605729"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /locus_tag="VGN19_07525"
     CDS             complement(<1..291)
                     /locus_tag="VGN19_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2469 domain-containing protein"
                     /protein_id="HEV7195772.1"
                     /translation="MSSEDLEKYESEMELQLYREYRDVVGLFSHVVETERRFYLCNSV
                     DVKVRSDGGEVYFDVTMQDAWVWDIYRPARFARQVRVVTFKDVNVEELAKSEL"
     gene            complement(288..1046)
                     /locus_tag="VGN19_07530"
     CDS             complement(288..1046)
                     /locus_tag="VGN19_07530"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEV7195773.1"
                     /translation="MPKAAVRPPSRRPSLRVERALQRDGHRILAGMDEVGRGALAGPV
                     TVGVVLIDETCRSAPTGVKDSKLLTPTARVAMVPRIRRWALAYAVGHASPGEIDQIGI
                     IAALRLAGRRALASVDVRPDLVILDGNHDWLTAPDEVGLFAFATDDALGIPPVTTMIK
                     ADLKCSSVAAASVLAKVERDALMVAAAPDYPAYGWHENKGYAAPEHLAALEEHGACDL
                     HRRSWRLPGVAGHDGVGVDPQAAQGVGQPEMSSR"
     gene            complement(1051..2058)
                     /gene="lepB"
                     /locus_tag="VGN19_07535"
     CDS             complement(1051..2058)
                     /gene="lepB"
                     /locus_tag="VGN19_07535"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEV7195774.1"
                     /translation="MTDFDSGAIEPGPAALESGPAQRDPRERSGGAHRGGSGASQGGG
                     ASRGGGPSRPGGAAAGSPSGMAVLGAAVKEIAIVVGLALVLSFVVKTWLLQAFYIPSG
                     SMEDTLRIDDRVIVSKLTPGPIALRRGDIVVFADPGDWVPAPVAKPQGTVSRLVGDAL
                     TFVGLLPDTAENHLIKRVIGLPGDHVVCCDVGGRITINGAPVKEPYLKAGNAASEQNF
                     DITVPAGRVWVMGDHRADSSDSRFHDGPKQNGSTGTVPESLIVGRAVALVWPLDHLAW
                     LSNPSDTFAKVPSPAHAIGQSPARTSNPTGSGGSPQLGGDAGTMTVSLGAAARTRSGR
                     D"
BASE COUNT          344 a          715 c          713 g          320 t
ORIGIN      
        1 gagctcggac ttcgcgagct cctcgacgtt cacgtccttg aacgtcacga cccggacctg
       61 acgagcaaat cgcgccggcc ggtagatgtc ccagacccag gcgtcctgca tcgtgacgtc
      121 gaagtagacc tcaccaccgt cagaccgaac cttcacgtcc acggagttgc acaggtagaa
      181 acgccgctcg gtctccacga catgcgagaa caggccgacg acatcccggt actcgcgata
      241 gagctgcagc tccatctcgg actcgtactt ctcgaggtcc tctgaactca tcgcgaactc
      301 atctccggtt gcccaactcc ctgtgctgcc tgtgggtcaa cacccacccc atcatgtccc
      361 gctacgccgg gcagacgcca cgacctgcgg tgcaggtcgc acgcgccgtg ctcctccaac
      421 gcggcaaggt gctccggcgc ggcatacccc ttgttctcgt gccacccgta tgccgggtag
      481 tcgggcgcgg cggccaccat cagtgcgtcg cgttcgacct tcgcaagcac cgatgcggcg
      541 gcgaccgaag aacacttgag gtcggccttg atcatggtgg tcacgggcgg gataccgagg
      601 gcgtcatcag tggcaaaggc gaacagtccg acctcgtccg gtgcggtgag ccagtcatgg
      661 ttgccgtcga ggatcaccag gtccgggcgg acgtccaccg aggcaagggc ccgacgcccc
      721 gccaggcgta gggcggcgat gatgccgatc tggtcgatct cgcccgggga ggcgtgcccg
      781 accgcataag ccaacgccca tcgacggatc cgcggaacca tggcaacacg ggccgtgggc
      841 gtgaggagct tggagtcctt gacgccggtc ggcgcgctcc ggcaggtctc gtcgatgagc
      901 acgactccga cagtgaccgg ccccgcgagc gcaccgcggc caacctcgtc catcccagcg
      961 aggatgcgat gaccgtcgcg ttggagggcc cgctcgacac gcaggctggg acggcgactg
     1021 ggtgggcgca cggcggcctt gggcatgacc tcagtctctc ccggaacgcg tcctcgccgc
     1081 ggctcccagg ctgaccgtca tggtcccggc gtcgccgccg agctggggcg agccaccaga
     1141 gcctgtgggg ttcgaggtgc gcgccgggct ctgcccgatg gcgtgggccg gagacggcac
     1201 cttggcgaag gtgtccgaag ggttggacag ccacgcgagg tggtcgaggg gccagaccaa
     1261 cgcgacggcg cgtccgacga tcaggctctc agggacggtg ccggtgctgc cgttctgctt
     1321 ggggccgtcg tggaagcggg agtcggagga gtcggcgcgg tggtcgccca tgacccagac
     1381 ccggccggca ggcacggtga tgtcgaagtt ctgctcgctg gctgcgttcc cggccttgag
     1441 gtacggctcc ttcacggggg caccgttgat ggtgattcgg ccacccacgt cgcagcagac
     1501 cacatggtcg ccgggaaggc cgatgacccg cttgatcagg tggttctcgg ctgtgtcggg
     1561 caacagtccg acgaacgtga gggcatcacc gaccagtcgg gacacggtgc cctgcggttt
     1621 ggcgacaggc gcgggcaccc agtcaccggg gtcggcgaac accacgatgt ctccgcgacg
     1681 cagggcgatc ggaccagggg tcagcttgct gacgatgacg cggtcatcga tccgcagcgt
     1741 gtcctccatg gatccggagg gaatgtagaa ggcctgcagc agccaggtct tgacgacgaa
     1801 ggacagcacc agagccagcc cgacgacgat ggcgatctcc ttgaccgccg cgccgagaac
     1861 ggccatgccg ctagggctgc ccgcggcggc acccccggga cgactgggtc cgccgccgcg
     1921 gctggccccg ccgccctggc tcgcgccgct ccccccgcga tgagccccgc cggaacgttc
     1981 tctcgggtcc ctctgcgcag gacccgactc gagtgcggcg ggaccaggct cgatggcacc
     2041 ggagtcgaag tcggtcactt cgcagccgcc ttcggaatac ctgccagcgt gg
//
LOCUS       DASYFY010000378         1774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1025868, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000378 DASYFY010000000
VERSION     DASYFY010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1025868"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VGN19_07540"
     CDS             complement(<1..626)
                     /locus_tag="VGN19_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019179972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HEV7195775.1"
                     /translation="MQIAGREVQITNPDKVFFPAAGYTKGDLIDYYLAVADGALRGVS
                     NRPMALKRFVQGAAGEAFFQKRAPANRPPWIETVVLSFPSGRTAEEIVVRDAAQLAWV
                     VNLGCIDLNPHPVRSDDLDHPDELRIDLDPMPGVPWSQVREVALAAKGVLDDMDLTGW
                     PKTSGSRGIHVYCRIERRWTFPEVRRAAVALAREVERRAPSLATSKWW"
     gene            complement(643..1515)
                     /locus_tag="VGN19_07545"
     CDS             complement(643..1515)
                     /locus_tag="VGN19_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEV7195776.1"
                     /translation="MAKVRVATWNVNSVKQRIPRLLPWLDQRRPDVVCLQETKVTDDA
                     FMDALGAALRERGYEIAHHGEAQWNGVAILSRAGLDDVEVGIPGGPGFPHQEARAIAA
                     TCGGVRVHSVYVPNGRVPDSEHYRYKLAWLAALDRLLQAGPAARMVCGDMNIAPAEAD
                     VFDPDAYRGQTHVTPPERTALADLVRHGLHDVVRERWPASRVFTYWDYRAGMFHQDLG
                     MRIDLVLASDAVAARVRAAWVDRQARKGSGPSDHAPVIVDLDEAPDGDIGPVVPPPST
                     PVVRRGEVKLPQAT"
     gene            1545..>1774
                     /locus_tag="VGN19_07550"
     CDS             1545..>1774
                     /locus_tag="VGN19_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018192206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HEV7195777.1"
                     /translation="MTDLYPAIEPHEHGLLEVGDGNLVYWETCGNPSGKPAVVVHGGP
                     GSGSTPYFRRFFNPRDYRVVLFDQRNCGRSRP"
BASE COUNT          269 a          618 c          606 g          281 t
ORIGIN      
        1 ttccaccact tcgaggtggc caggctcggt gctcgccgct cgacctcgcg ggcgagggcg
       61 accgcggcgc ggcggacctc cggaaacgtc caccgccgtt cgatccggca gtagacgtgg
      121 atcccgcgcg agcccgaggt cttcggccag cccgtcaggt ccatgtcatc gagcacgccc
      181 ttggccgcga gcgccacctc gcggacctgc gaccacggaa ctccgggcat tgggtcgagg
      241 tcgatccgca gctcgtccgg atggtcgaga tcgtcgctgc gcaccgggtg cgggttgagg
      301 tcgatgcagc ccaggttcac cacccacgcc agctgggcgg cgtcgcggac gacgatctcc
      361 tccgctgttc ggcccgaagg aaagctgagc accactgtct cgatccaggg cgggcggttc
      421 gccggcgcgc gcttctggaa gaaggcctct cccgcagcac cctggacgaa gcgcttgagc
      481 gccatcgggc ggttggagac gccccgcagg gcgccatccg cgacggccag gtagtagtcg
      541 atcaggtcgc ccttggtgta cccggcagcc gggaagaaga ccttgtccgg gttggtgatc
      601 tggacctcgc ggcccgctat ctgcaccgcc gacctgcagc gactaggtcg cctgcggaag
      661 cttgacctcg ccccggcgga ccaccggggt ggaggggggc ggcacaaccg ggccgatgtc
      721 gccgtctggc gcctcatcga ggtcgacgat cacgggagcg tggtcgctcg gcccgctgcc
      781 cttgcgcgcc tggcggtcga cccacgctgc ccgcacgcgc gccgccacgg cgtcgctggc
      841 caggaccagg tcgatcctca tgccgaggtc ctggtgaaac atgcccgccc ggtagtccca
      901 gtaggtgaag acgcgcgaag ccggccagcg ctcgcggacc acgtcatgca agccgtgccg
      961 gaccagatcg gccagtgccg tccgttcggg cggtgtgaca tgtgtctggc cgcggtaggc
     1021 gtcgggatcg aagacgtcgg cctcggcggg cgcgatattc atgtccccgc acaccatccg
     1081 cgcggcgggg ccggcctgaa gcaaacggtc gagggccgcc agccaggcca gcttgtagcg
     1141 gtagtgctcg gagtcgggga cgcggccgtt gggcacgtaa accgagtgca cccggacccc
     1201 gccgcaggtg gccgcgatcg cgcgtgcctc ctggtgaggg aaacccggtc cacccggaat
     1261 cccgacttcg acgtcatcga ggccggcccg agacaagatc gccaccccgt tccactgggc
     1321 ctcgccgtgg tgggcgatct cgtacccgcg ttcgcgcagg gcggcgccca gcgcgtccat
     1381 gaacgcgtcg tccgtgacct ttgtctcctg gaggcagacc acgtccggtc tgcgttggtc
     1441 gagccagggc agaagtcggg gtatccgctg cttgaccgag ttcacgttcc aggtcgcgac
     1501 gcgcaccttc gccatgatcg gacactgcgc gacagtagtg tctcgtgacc gacctatatc
     1561 ccgcaatcga accccacgag cacggcctgc tggaggtcgg tgacggcaac ctcgtgtact
     1621 gggaaacgtg cggcaatccc tcaggcaagc ccgcggtcgt tgtccacggc ggtccgggct
     1681 ctggatctac gccttacttt cggcgattct tcaacccgcg cgattaccgg gtggtcctgt
     1741 tcgaccagcg caattgcgga cggagccgcc ctca
//
LOCUS       DASYFY010000379         3909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1342458, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000379 DASYFY010000000
VERSION     DASYFY010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342458"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..730
                     /locus_tag="VGN19_07555"
     CDS             119..730
                     /locus_tag="VGN19_07555"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEV7195778.1"
                     /translation="MLNKYARALFTKIFTPVAKLFLRLGISPDAVTIVGTLGVCVGAL
                     AFYPRHEFFWGTVVIAVFVFSDTVDGVMARLSGRSGRWGAYLDSTLDRVGDSAIFGGL
                     VLWYAGDGGNLFMAGLALACLILGSVVSYAKARAEGLGMTANVGIAERADRLVAVLAT
                     TGLVGLGLPEVVLTIVLLLLAVASLVTVVQRMLTVRKQALGML"
     gene            738..1637
                     /locus_tag="VGN19_07560"
     CDS             738..1637
                     /locus_tag="VGN19_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol mannoside acyltransferase"
                     /protein_id="HEV7195779.1"
                     /translation="MSAVGDLLAVGGYRLGWGAVRRLPERAAYLVFDRLADLSVARGG
                     RGVQRLRANYARVRPELSDSELDALVRAGMRSYLRYYCEAFRLPDRTAQEIRDAVRVE
                     GDGPVREHLAAGRPVVCFLGHLGNWDLAGAWGARELGPVVTVAERLKPESVYAEFLAF
                     RESLGMTILPLTGGGDVFAELRAHLSSPVVMPLLADRDLTDRGIDVDLCGHRASMAAG
                     PAALSLATGAALFPVTIRYEPVPGSTWRQRIVITFHEPVQPPDSGTTRAKATALTQQC
                     ADALGAAITAHTEDWHMLQRVFT"
     gene            1634..2827
                     /locus_tag="VGN19_07565"
     CDS             1634..2827
                     /locus_tag="VGN19_07565"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7195780.1"
                     /translation="MRIGLVCPYSFDVPGGVQFHVRDLAEYFLGQGHHASVLAPADED
                     TPLPSYVESVGRAVPVRYNGSVARLNFGPVTAARVGRWVERGAFDVVHLHEPVTPSIS
                     ILALWAAEGPVVATFHTSNLRSRAMQAAYPLLRPSLEKISGRIAVSEDARRTVTTHLG
                     GDAVVIPNGVNVVRFAQAAKRPAWCGTAEEPTIAFLGRIDEPRKGLPVLAGAMASVLG
                     QLAGARLLVAGPGDVAAARDRLDPAVAARTEFLGTVTDEDKASLLASADLYVAPHTGG
                     ESFGIVLVEAMSAGVPVVASNLPAFVRVLDGGRAGQTFANEDSADLARTLVRLLQDPD
                     ERNRLTAEGHRRAQVFDWSVVAEDVMAVYDTVTHTASGPRSDSATDTRWTRLLRGKVR
                     GGDEG"
     gene            2824..3405
                     /locus_tag="VGN19_07570"
     CDS             2824..3405
                     /locus_tag="VGN19_07570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195781.1"
                     /translation="MNSPTWVVVAVALLLGVAWYLSYGAARLDRLHARVEGALSALDA
                     QLVRRAEATLELANSGALDPASALMMAAAASESLEAHNERALEHDLLEGQHFAGREVI
                     ETDLTLALQAALSQAVVDGLRSAQGPGMPALERVEAAGVRVQLARRFHNDAVKDVQRV
                     RRKLAVQVFRLAGHAELPRTVEFDDDLPAAVRD"
     gene            3518..>3909
                     /locus_tag="VGN19_07575"
     CDS             3518..>3909
                     /locus_tag="VGN19_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774792.1"
                     /note="with PdxT forms pyridoxal 5'-phosphate from
                     glutamine, either ribose 5-phosphate or ribulose
                     5-phosphate, and either glyceraldehyde 3-phosphate or
                     dihydroxyacetone phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEV7195782.1"
                     /translation="MSADATATTSQPTTGTSRVKRGMAEMLKGGVIMDVVNAEQAKIA
                     EDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIIGAVSIPVMAKSRIGHFVEAQI
                     LQSLGVDYIDESEVLTPADYANHIDKWA"
BASE COUNT          539 a         1386 c         1374 g          610 t
ORIGIN      
        1 gccggtgatc gcgcagacga aagccctgcc gatgctcctg gaggatgtgc gcggccggct
       61 ggcagcggcg tggccctcgg cctgagccga gccaccgctc agtaggctgg ccaccaccat
      121 gctcaacaag tacgcacgcg cgctgttcac caagatcttc acccccgtcg cgaagttgtt
      181 cctgcgcctg gggatcagtc ccgacgccgt gaccatcgtc ggcaccctcg gcgtctgcgt
      241 cggggcgctg gccttctacc cgcgccacga gttcttctgg ggaactgtgg tcatcgccgt
      301 cttcgtgttc tccgacaccg tcgacggcgt gatggctcga ctgtccgggc gctccgggcg
      361 gtggggcgcc tacctggact cgaccctgga ccgggtcggc gactcggcca tcttcggagg
      421 actggtgctc tggtatgccg gcgacggcgg caacctgttc atggccggac tcgcgctggc
      481 ctgtctgatc ctcggcagtg tcgtgtccta tgcgaaggcg cgcgccgaag ggctcggcat
      541 gaccgccaac gtgggcatcg ccgagcgtgc ggaccggctc gtcgcggtgc tggcgacgac
      601 cggactcgtg ggcctggggc tgcccgaggt ggtgttgacc atcgtgctgc tgctgctggc
      661 ggtggcgagc ctggtcaccg tggtgcagcg catgctgact gtgcgcaagc aggccctggg
      721 catgctgtga ggctcacgtg agcgccgtcg gcgacctact cgccgtcggc ggttaccggc
      781 tggggtgggg ggcggtgcgt cgcctgcccg agcgggcggc atacctggtc ttcgatcgcc
      841 tcgcggacct cagcgtcgcc cgaggtggtc gcggggtcca acggctgcgg gccaactacg
      901 cgcgagtccg gccggagctc agcgacagcg agctcgacgc gctggtgcga gccggcatgc
      961 gctcctatct gcggtactac tgcgaggcct tccgactccc ggaccgcacc gcccaggaga
     1021 tccgggatgc cgtgcgggtg gagggggacg ggccagtacg cgagcacctt gccgcgggac
     1081 ggcccgtcgt ctgcttcctg ggtcacctcg gcaactggga cctcgccggc gcctgggggg
     1141 cgcgcgagct cggaccggtg gtcaccgtgg ccgaacgact caagcccgag tccgtgtatg
     1201 ccgagttcct cgcctttcgg gagtcactcg gcatgaccat cctcccgctg accggtggtg
     1261 gggacgtctt cgccgagctg cgggcccatc tgtcctcgcc cgtcgtcatg ccgctgctgg
     1321 ccgaccggga cctcaccgac cgggggatcg acgtcgacct gtgcggccac cgggcgtcga
     1381 tggccgccgg acccgcggcc ctctcgctgg ccaccggggc cgcgctgttc ccggtgacca
     1441 tccggtacga gccggttccc ggctcgacct ggcggcagcg catcgtcatc accttccacg
     1501 aaccggtcca accgccggac tccgggacca ctcgcgcgaa ggcaaccgcc ctgacccaac
     1561 agtgcgcgga cgccctcggc gccgccatca ctgcccacac cgaggactgg cacatgctcc
     1621 agcgggtctt cacgtgagga tcgggctcgt ctgcccgtac tccttcgacg tgcccggggg
     1681 agtgcagttc cacgtccgcg acctggccga gtacttcctc ggtcagggtc atcatgcgtc
     1741 cgtcctcgcg cccgccgacg aggacacccc gttgccgtcg tacgtggagt cggtcgggcg
     1801 ggccgtgccg gtgcgctaca acggctcggt cgcccggctg aacttcgggc ctgtcacggc
     1861 cgcccgggtc ggtcgctggg tcgagcgcgg cgccttcgac gtcgtgcacc tgcatgagcc
     1921 cgtcacgcct agcatctcga tcctcgcgct gtgggccgcg gagggcccag tggtggcgac
     1981 gttccatact tccaacctgc gctcgcgggc gatgcaggcg gcatacccgc tcctgcggcc
     2041 cagcctggag aagatcagcg gccggatcgc ggtctcggag gacgcgcggc gaaccgtcac
     2101 cacccacctc gggggagacg cggtcgtgat tcccaacggg gtcaacgttg tccgtttcgc
     2161 gcaggcggcc aagcgccccg cgtggtgcgg aaccgcagag gaacccacga tcgccttcct
     2221 cggccgaatc gacgagccgc gcaagggcct gccggtgcta gccggtgcca tggcctcggt
     2281 gctcggccag ctcgccgggg cgcggctact cgtcgcgggt ccgggagacg tcgcggcggc
     2341 gcgcgacagg ctcgaccccg cggtcgccgc gcgcaccgag ttcctgggga cggtcactga
     2401 cgaggacaag gcctcgctgc tggcctcggc ggacctgtat gtcgcgccac ataccggggg
     2461 tgagagcttc ggcatcgtcc tggtggaggc gatgagcgcc ggagtccccg tggtcgcgag
     2521 caacctgccg gccttcgtgc gggttctcga cggcgggcgc gcgggccaga cctttgcgaa
     2581 cgaggacagc gccgacctgg cccgaaccct ggtgaggctg ttgcaggacc cggacgagcg
     2641 caaccggctg acggcagagg gccaccggcg cgcacaggtc ttcgactggt cagtcgtcgc
     2701 ggaggacgtc atggccgtgt acgacactgt gacgcacacg gccagtggcc ctcggtccga
     2761 ctcggcgacc gacacccgct ggacccgcct gctgcgaggc aaggtccgag gaggtgacga
     2821 gggatgaaca gccccacgtg ggtcgtggtc gccgtggcgc tcctgctggg ggtggcctgg
     2881 tacctgtcct acggcgctgc ccgcctcgac cggctgcatg cccgggtcga gggggcgctc
     2941 tcggccttgg acgcccagct cgtccgccga gccgaggcaa ccctggagct ggccaactca
     3001 ggtgccctcg accccgcgag cgccctgatg atggccgccg ccgcctcgga gtcgctggag
     3061 gcgcacaacg agcgcgccct ggagcacgac ctgctcgagg gccagcactt cgcgggtcgc
     3121 gaggtgatcg agacggacct gacgctcgcg ctccaggctg ccctcagcca ggccgtggtc
     3181 gacggcctgc gatcggcaca gggtcctggg atgccggccc tggagcgggt cgaggctgcc
     3241 ggggtccggg tgcagctggc acgtcggttc cacaacgacg cggtcaagga cgtgcagcgg
     3301 gttcgccgca agctcgcggt gcaggtcttc cggctcgcgg gccacgccga gctcccgaga
     3361 accgtcgagt tcgacgacga tctccccgca gcggtgcgcg actgagcctg cctggctcga
     3421 acgccggccc gttcgaggca ggcagtcgca ccaactaaca tgtggcgtga agcgcgattc
     3481 ctgcgctgcg ccctgaacag atctggagtt ggacccgatg tccgccgacg caaccgcaac
     3541 caccagccag cccaccaccg gtacgtcgcg cgtcaagcgc ggtatggccg agatgctcaa
     3601 gggcggcgtc atcatggatg tcgtcaacgc cgagcaggcg aagatcgccg aggacgccgg
     3661 cgccgttgcc gtgatggccc tcgagcgcgt cccggccgac atccgcgccc agggcggcgt
     3721 ctcgcgcatg tccgaccccg acatgatcga cggcatcatc ggcgcggtct ccatcccggt
     3781 catggccaag tcccggatcg gccacttcgt cgaggcccag atcctgcagt cgctcggcgt
     3841 cgactacatc gacgagtccg aggtgctcac cccggccgac tacgccaacc acatcgacaa
     3901 gtgggcctt
//
LOCUS       DASYFY010000380         2718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_868475, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000380 DASYFY010000000
VERSION     DASYFY010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_868475"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..687
                     /locus_tag="VGN19_07580"
     CDS             82..687
                     /locus_tag="VGN19_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003801301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7195783.1"
                     /translation="MPDTTCHMSISLDGFVAGPDQGLDNPLGKRGAELHGWHIGDSRA
                     TQADKIATEWLMRPRGAYVMGRNMFGPIRGDWDEEWVGWWGPEPPYHAPVFVLTHHGR
                     DPIQMEGGTTFHFVTEGFDAAYSAACETAGERGVDIAGGASTVRQALQAGVIDELTLD
                     IAPVLLGAGERIFDGSETFGFEPAEVLHSPISTHIRYRRIS"
     gene            complement(839..1666)
                     /locus_tag="VGN19_07585"
     CDS             complement(839..1666)
                     /locus_tag="VGN19_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195784.1"
                     /translation="MSATATATRPTATAASPARMLNKVPEVTIFFWVIKILCTTVGES
                     VADYLNTTLGFGLGTTTIVFSAALGAALFAQFRLRSYVPAVYWTVVVLISVVGTLLTD
                     NLTDGLGVPLWLSTAVFSGLLVAVFGVWYTRERTLSIHSIVTAPREAFYWGTVLVTFA
                     LGTAAGDLTLDLTGWGPGPSVLLPATLIALTAAAWRLGAGPVVCFWVAYILTRPLGAN
                     LGDYFGSAPADGGIGLGTMWTSLLFLGAILATVIYLSVTRRDQIPAETADQALLPVS"
     gene            1903..>2718
                     /locus_tag="VGN19_07590"
     CDS             1903..>2718
                     /locus_tag="VGN19_07590"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008935 - 1,4-dihydroxy-2-naphthoyl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HEV7195785.1"
                     /translation="MSEQPVVSETFDPGAWQEVDEFDFTDVTYHRAREVGAVRIAFSR
                     PEVLNAFRPHTVDELYQALDHARRTPDVGVVLLTGNGPGPEGSGSAGQWAFCSGGDQR
                     IRGRSGYQYAAGETSDTVDERRVKAEGGRLHILEVQRLIRTMPKVVIALVNGWAAGGG
                     HSLHVVCDLTMASREHARFKQTDADVGSFDGGYGSAYLAKMVGQKFAREIFFLGRTYT
                     ADDMHRMGAVNLVSDHAELESDALQVAREIMGKSPQAQRMLKFAFNLLDDGLMG"
BASE COUNT          454 a          898 c          977 g          389 t
ORIGIN      
        1 gcccgcgctc tcggtcccgg accgtcgttc taggcaccac ggtgccgacg cttgcaaatc
       61 gcaatcagtt ggaggacgcc gatgccggac accacctgcc acatgtcgat ctcgctggac
      121 ggcttcgtcg ccgggccgga ccagggcctg gacaacccgc tggggaagcg gggggcagag
      181 ctgcacggtt ggcacatcgg cgactcacgg gcgacccaag cggacaagat cgcgaccgag
      241 tggctcatgc gcccccgggg cgcgtatgtg atggggcgga acatgttcgg cccgatccgc
      301 ggggactggg acgaggaatg ggtcggctgg tggggccccg aaccgccgta tcacgcgccg
      361 gtgttcgtgc tgacccatca cggtcgcgat cccatccaga tggagggggg gaccacgttc
      421 cacttcgtca ccgaaggttt cgacgcggcc tactccgcgg cctgtgagac cgccggggaa
      481 cgcggcgtgg acatcgccgg aggggcctcg accgtccgcc aggcgctgca agctggggtg
      541 atcgacgagc tcaccctcga catcgcgccc gtcctgctcg gtgcagggga gcgcatcttc
      601 gacgggtccg agactttcgg cttcgagccc gccgaggtct tgcactcgcc gatctccacc
      661 cacatccgct accgccgcat cagctgactc tgaaaccgcg gtagccgggt ggtctcttca
      721 gcggggcgcc cgcaagcagc cggctgcccc cacggtcagc gaacgtgttg gcgggcagat
      781 gcgggcccgg ggttgtcacg caaggtgtcg ggcgcgccct gcgtgacaac ccttacgctc
      841 agctgacggg caggagcgcc tggtcggcgg tctcggcggg gatctggtcg cggcgggtca
      901 cgctcaggta gatgaccgtg gcgaggattg ccccaaggaa cagcaggctg gtccacatcg
      961 tgcccagacc gataccgcca tcagcgggag cggagccgaa gtagtcgccg aggttggcgc
     1021 cgaggggccg cgtcaggatg tacgccaccc agaagcagac cacgggaccg gcgcccaggc
     1081 gccaagcggc cgcggtcagg gcgatcagag ttgccggcag gagcaccgac gggccgggac
     1141 cccatccggt caggtcgagc gtcaggtcgc cggcagcggt gccgagcgcg aacgtgacga
     1201 ggactgtgcc ccaatagaag gcttcacgag gggcggtcac gatcgagtgg atggacaggg
     1261 tgcgctcgcg ggtgtaccag acgccgaaga cggccacgag cagtccgctg aagacggcag
     1321 tgcttagcca cagcggcacg cccaacccgt cggtcaggtt gtcagtgagc agggtcccca
     1381 cgacgctgat gagcacgacc acggtccagt agacggccgg cacatagctg cgcagccgga
     1441 actgcgcgaa cagggcggcg cccagggccg cactgaacac gatggtggtg gtgcccaggc
     1501 cgaagccgag ggtggtgttg aggtagtcgg cgacgctctc gccgaccgtg gtgcacagga
     1561 tcttgatcac ccagaaaaag atcgtgactt cggggacctt gttaagcatc cgtgcgggag
     1621 acgcagccgt cgccgtgggg cgagtggctg tagcggtggc agacatggag attccttgca
     1681 gtcggcggtg ctgacgcgtc ggccaggctc ggtccaccat tcctatgggg ccgctctgaa
     1741 cctccactga atgccacatg tactgccggg gtggggcgcc ttcacacccc cgttgccccg
     1801 accgccgagc tcaaccggcg gagcccctgg gcgtggaaag ccatgcggcc ccggtaggcg
     1861 gcctccgccg tcggggccac agcccgcggc taggctcgcg gcgtgagtga gcagcccgtc
     1921 gtcagcgaga ccttcgaccc cggtgcctgg caggaggtcg acgagttcga cttcaccgac
     1981 gtcacgtacc accgggcgcg cgaggtgggc gccgtgcgga tcgccttctc ccgtcccgag
     2041 gtgctcaacg cgttccgccc ccacacggtc gacgagctgt accaggcgct cgaccacgcg
     2101 cgccgcacgc ctgatgtcgg ggtggtcctg ctcaccggca acgggcctgg gccggaaggc
     2161 agcggcagcg cgggtcagtg ggcgttctgc tccggcggcg accagcgcat ccggggccgc
     2221 tcgggctacc agtacgcggc cggagaaacc tccgacacgg tcgacgagcg tcgggtgaag
     2281 gccgagggcg gccggctgca catcctcgag gtgcagcgcc tcatccgcac catgccgaag
     2341 gtcgtgatcg ccctggtcaa cggctgggcg gcgggcggcg ggcactcgct gcacgtcgtg
     2401 tgcgacctga cgatggccag ccgggaacac gcgcggttca agcagacgga cgcggacgtg
     2461 gggtcgttcg acggcggcta cggcagcgcc tacctggcca agatggtggg gcagaagttc
     2521 gcccgcgaga tcttcttcct cggacgcaca tacaccgccg atgacatgca ccggatgggg
     2581 gccgtgaacc tcgtgagcga ccacgccgag ctcgagtccg acgcccttca ggtggcgcgc
     2641 gagatcatgg gcaagagccc tcaggcccag cggatgctga agttcgcctt caacctgctc
     2701 gacgacgggc tgatgggc
//
LOCUS       DASYFY010000381         2241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1342498, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000381 DASYFY010000000
VERSION     DASYFY010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342498"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..842
                     /locus_tag="VGN19_07595"
     CDS             <1..842
                     /locus_tag="VGN19_07595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEV7195786.1"
                     /translation="GVDPALDFGDIDKVRREAEYATRVPVHPRHPYAGDLVYTAFSGS
                     HQDAIKKGFDDMERRAKESGTSTDDLVWGVPYLPIDPHDIGRTYEAVVRVNSQSGKGG
                     VAYLLKTEHQLDLPRRLQIEFSAVVQAKTDSEGGEVSADELWRVFQDEYLPAVDGGVN
                     SWGRFTPVSHSLISEEDGIDRIAATLLDRGVELTLEGTGNGPIAAFVDALSAVDVDVR
                     VLDYHEHALSAGGDARAAAYVECAVGDRVFWGVGLHSSIVKASLTAVLSAVNRAERTA
                     PTT"
     gene            complement(851..1480)
                     /locus_tag="VGN19_07600"
     CDS             complement(851..1480)
                     /locus_tag="VGN19_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020658338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HEV7195787.1"
                     /translation="MVMALQGSLLDLGDEIELRELGAGLRRTELGRGAWVDYRPGWLA
                     GADELFDLLHHEVPWHAERREMYERMVDVPRLLKFYDEGERLPHPVLTQAREQLTARY
                     AAELGEPFVTAGMCLYRDGRDSVAWHGDRIGRSKDQDTMVAIVSVGSARSLMLRPRGG
                     GESTGFSLGHGDLVVMGGSCQRTWDHCIPKTADAVGPRISIQFRPRGVR"
     gene            1582..>2241
                     /gene="recO"
                     /locus_tag="VGN19_07605"
     CDS             1582..>2241
                     /gene="recO"
                     /locus_tag="VGN19_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEV7195788.1"
                     /translation="MPLYRDEGIVLRTQKLGEADRIVTLLTRGLGKVRVVGKGVRRTK
                     SRFGARLEPGMMVDVQCYEGRSLDTVTQAECLAAWGDVLARDYTMYTSAAAMLETADR
                     LTEEREPNLQQYLLLQGALRSMAEGLHDPGLVLDAYLLRALAVAGWAPSFHDCARCGA
                     VGPHRAFNLAAGGTVCPVCRPPGSAAPAPETLSLLAALLAGDWVVADASQQRHRREGS
                     SL"
BASE COUNT          342 a          780 c          787 g          332 t
ORIGIN      
        1 agggggtcga tccggcactc gacttcggcg acatcgacaa ggtgcgacgg gaagccgagt
       61 acgccacccg ggtgcccgtc cacccccgcc acccctacgc gggcgacctc gtgtacaccg
      121 ccttctccgg ctcgcaccag gacgccatca agaagggctt cgacgacatg gagcgccggg
      181 ccaaggagtc cggcacctcg acggacgacc tggtctgggg cgtgccatac ctgcctatcg
      241 acccgcacga catcggtcgc acctacgagg ccgtggtgcg cgtcaacagc cagtcgggca
      301 agggcggggt ggcgtacctg ctcaagaccg agcaccagct ggacctgccg cgccggttgc
      361 agatcgagtt cagcgccgtg gtgcaggcca agacggacag cgagggtggc gaagtgagtg
      421 ccgacgagct gtggcgggtc ttccaggacg agtacctgcc agcggtggac ggcggggtca
      481 acagctgggg tcggttcacg ccggtcagcc actcgctgat cagcgaggaa gacggcatcg
      541 accggattgc tgccaccctg ctcgaccggg gtgtcgagct caccctcgag gggaccggca
      601 acggccctat cgccgccttc gtggacgccc tgtccgcggt ggacgtggac gtgcgcgtcc
      661 tcgactacca cgagcacgcc ctctcggccg gtggtgacgc ccgcgctgcc gcctacgtcg
      721 agtgcgccgt cggtgaccgg gtcttctggg gtgtcggcct gcacagctcc atcgtcaagg
      781 catcgctcac tgccgtgttg tctgcggtca accgcgccga gcgcacggcg cccaccacct
      841 agccagcggg tcagcggacg ccgcgcggac ggaactggat cgagatccgt ggacccacgg
      901 cgtcggcggt cttggggatg cagtggtccc aggtgcgctg gcacgagcca cccatcacga
      961 cgaggtcgcc gtggcccagc gagaagcctg tcgactcgcc gcctccgcga ggccgcagca
     1021 tgagggagcg agcggagccg accgagacga tggcgaccat ggtgtcctgg tccttggacc
     1081 gaccgatgcg gtcgccgtgc caggcgacgg agtctcgccc atcgcgatac aggcacatcc
     1141 ccgccgtcac gaacggttcg ccgagctccg cggcataccg cgcggtcagc tgctcgcgag
     1201 cttgggtgag caccgggtgg ggaagccgct cgccctcgtc gtagaacttc agcagccggg
     1261 gcacatccac catccgctcg tacatctcgc ggcgctcggc atgccagggc acctcgtgat
     1321 ggaggaggtc gaagagctcg tcggcgccgg ccagccagcc ggggcggtag tcgacccagg
     1381 cgccgcgacc cagctcggtg cgccgcaagc cggctccgag ctccctcagc tcgatctcgt
     1441 cgccgaggtc caggagcgag ccctgaagtg ccatcaccat gacggcattc tacccaggac
     1501 tcgaacgtat gttctagtgg tgactcgcga cgggcggtgc ggcatgcgag gaattgggtc
     1561 gccgcgagag agaatggccc catgcccctg taccgtgacg aaggcatcgt cctgcgcacc
     1621 cagaagctgg gcgaggccga ccgcatcgtc acgctgctga cccgtgggct gggcaaggtg
     1681 cgggtcgtcg gcaagggggt ccgccggacc aagagccgct tcggcgcccg gctcgagccg
     1741 gggatgatgg tcgatgtcca gtgctacgag ggtcgttcgc tcgacactgt gacccaggcc
     1801 gagtgcctgg ccgcctgggg tgatgtgctg gcccgcgact acacgatgta cacctccgcc
     1861 gccgcgatgc ttgagaccgc ggaccggctg accgaggagc gcgagcccaa cctccagcag
     1921 tacctgctcc tgcaaggggc gttgcgttcg atggccgagg gcctgcacga tccgggtctg
     1981 gtcctcgacg cctatctgct gcgcgctctg gccgtcgccg ggtgggcccc gagcttccac
     2041 gactgcgcgc ggtgtggcgc cgtcggcccg catcgggcct tcaacctcgc cgccggcggg
     2101 accgtgtgtc ctgtatgccg cccgccgggc tccgcggccc ccgcgcccga gacgctgtcg
     2161 ctgctggcag ccctgctggc cggtgactgg gtggtggccg acgcctcgca gcagcgacac
     2221 cgccgggagg gcagctcgct g
//
LOCUS       DASYFY010000382         1854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1708691, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000382 DASYFY010000000
VERSION     DASYFY010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1708691"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VGN19_07610"
     CDS             <1..424
                     /locus_tag="VGN19_07610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195789.1"
                     /translation="RVAAISYVRVGDSSPVETKPPAPTSTAGETPAQKWAALCDAVDE
                     RITSDPHWPALAAQLDRAAAAGTDIGAVLHQVTADNALPDDHPARSLAYRVADVVPDL
                     RSPARMRTDAEPAPAPRTAPPAPPPCLDPGAYRPGPRR"
     gene            complement(673..879)
                     /locus_tag="VGN19_07615"
     CDS             complement(673..879)
                     /locus_tag="VGN19_07615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEV7195790.1"
                     /translation="MSDYPPVVAMAEMTSMLGISRSRLVQLLVTSEFPDPIATLTVGR
                     IWSTTDIEAYAQQTGRTLQPIPAR"
     gene            1000..1251
                     /locus_tag="VGN19_07620"
     CDS             1000..1251
                     /locus_tag="VGN19_07620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195791.1"
                     /translation="MTATQTSTKTLPWLVGDRVQIQHKGQPKSGRISSIHHINDGVEY
                     VVRTDPQGGGIGEVLNIWTSSGSSSFLTALAPTAQRGAR"
     gene            1248..1622
                     /locus_tag="VGN19_07625"
     CDS             1248..1622
                     /locus_tag="VGN19_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195792.1"
                     /translation="MTLSTYDERLSWTQLGVHMGYTAEEPQREEILAAIERMTWTETP
                     ARPPYLDGPAVRAIVNAVFHHRRDQLHLVGVAQLNGGRQLIGLEDTLGTRSFLLDLDA
                     EAIYVLAEFSHPLTRHQRNRVA"
     gene            1667..>1854
                     /locus_tag="VGN19_07630"
     CDS             1667..>1854
                     /locus_tag="VGN19_07630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195793.1"
                     /translation="MTDEFTYTTEQALARSVLLTAVNGGINHWARVHGFTVDCPPEQV
                     RAEGVDTVDDRSLWHVDLS"
BASE COUNT          346 a          738 c          530 g          240 t
ORIGIN      
        1 acgagttgcc gcgatcagct acgtcagggt cggcgactcc agcccagtcg agacgaagcc
       61 acccgccccg acgtcgacgg ccggcgagac cccggcacag aagtgggccg cgctgtgcga
      121 cgccgtcgac gagcggatca ccagcgaccc gcactggccc gcgcttgccg cacagctcga
      181 ccgcgccgcc gccgcaggca ccgacatcgg cgcagtcctg caccaggtca ccgccgacaa
      241 cgccctgccc gatgaccacc cggcgcgcag cctcgcctac cgcgtcgccg acgtcgtccc
      301 tgacctgcgc tcccccgccc ggatgcgcac cgacgccgaa cccgccccgg cgccccggac
      361 agcaccgccg gcgcccccgc cctgcctgga cccgggcgcg taccggccgg gtccgcggcg
      421 ctgaaactcg cgaatttcca gcatgcagcc gccccaggac aacccgccgg aaaattcttc
      481 ggccaaaagt ggcactaacg gaccagaaat ttcacctgcc cctagtgaga gcacccctca
      541 ctaccgggag caggcatgga gcacacgagt ggcagcgccg acgccagccg cgcgtccaca
      601 ggcaaactca acgacctaac accgccgcgg tttgcaccgc ggcccgctgc tcacgcgtac
      661 agccgcaagc catcaccgag cagggattgg ctgcagggtc ctgccggtct gttgggcgta
      721 cgcctcgatg tccgtcgtgg accagatccg gcccacggtc agtgtcgcga tcgggtccgg
      781 gaactccgac gtcacgagca gctgcaccag acgcgagcga ctgatcccca gcatcgacgt
      841 catctcagcc atcgccacga cgggcgggta gtcgctcatt cccaaatcct aaccgactcg
      901 tgcactaaac gccttgtgta ctgtacgact cgtgcagtac actacttgta cagtgcgcga
      961 cacgtgcacc tccattttca cccactggag gcgagcggaa tgaccgccac acagaccagc
     1021 accaagaccc tcccatggct cgtgggcgac cgcgtgcaaa tccagcacaa gggccagccc
     1081 aagtcgggcc ggatcagctc gatccaccac atcaacgacg gcgtcgagta cgtcgtgcgc
     1141 accgaccccc agggcggcgg gatcggcgag gtcctcaaca tctggacctc ctcgggcagc
     1201 tcgtcgttcc tgacggcact ggcccctaca gcacagcgcg gtgcgcgatg acgctgagca
     1261 cctacgacga acggctgtcc tggacccagc tcggcgtcca catgggctac accgccgagg
     1321 agccccagcg cgaggaaatc ctcgccgcga tcgagcggat gacctggacc gagaccccgg
     1381 cccgtccgcc ctacctcgac ggccccgccg tccgcgccat tgtcaacgcc gtcttccacc
     1441 accgccgcga ccagctccac ctggttggcg tcgcccagct caacggcggt cggcagctca
     1501 tcggcctgga agacaccctc ggcacacgca gcttcctgct cgacctcgac gccgaagcca
     1561 tctacgtgct cgccgagttc agccaccccc tcacccgcca ccagcgcaac cgcgtcgcct
     1621 gagcgcgatc acccgcgaca acgacgccac tccgaaggag ccagacatga cagacgagtt
     1681 cacctacacc accgagcagg cactcgcgcg cagcgtcctg ctcaccgccg tcaacggcgg
     1741 catcaaccac tgggcccgcg tgcacggctt caccgtggac tgcccgcccg agcaggtccg
     1801 cgccgagggc gtcgacaccg tcgatgaccg ctcgctgtgg cacgtcgacc tgtc
//
LOCUS       DASYFY010000383         1520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1446466, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000383 DASYFY010000000
VERSION     DASYFY010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1446466"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VGN19_07635"
     CDS             complement(<1..990)
                     /locus_tag="VGN19_07635"
                     /inference="COORDINATES: protein motif:HMM:NF015648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEV7195794.1"
                     /translation="MTEPPLEDSDAVDAGDDPATTGWQHLHPLSPFLRGGVAFVGAVG
                     YVFSQQVNRIFGSAADDPTQGHPLYAAVGAAVLLGAILGGAWVSWRVSKFRIGAAFLE
                     LRHGLLFRQHRQVPFDRIQAVDISRPVLARLTGLSEVVVQSAGGRDSHLKLAFLTDSR
                     AQEVRELLLALADRPDEAQDAGRATATQSLTDSGTHPAAGAAPVASAIAALRVPNTRL
                     IQATLYSGGAVFVALATPTLVVGFATGNGAAVSWLGPTVLGVGGRHLRRVVRDANFTV
                     RQQGDRLVVRRGLTDLHSTSVPLHRVQAVGLVQPLFWRVLGWWRLHVNVAGAGS"
     gene            complement(987..1508)
                     /locus_tag="VGN19_07640"
     CDS             complement(987..1508)
                     /locus_tag="VGN19_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013769737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEV7195795.1"
                     /translation="MSDTPPAPFRERPEVRLFDDSGMPWRPVSTKLVPARLTLLAAAL
                     VLPLGVAAALALQVADGWWWAVVAVAVVGAAGTWVVLRQVSAISWVELEEELVVRRGR
                     IFRTLVSVPYGRLQYVDVHSGPLDRMLGIAEVALHTASPQLSAHIPGLPVAEAETLRQ
                     RLAARGESQRAGL"
BASE COUNT          260 a          563 c          527 g          170 t
ORIGIN      
        1 cgagccggct cccgcgacgt tgacgtgcag ccgccaccaa ccgaggacgc gccagaacaa
       61 gggctggacc agccccaccg cctggacccg gtgcaggggg acgctcgtcg agtggaggtc
      121 ggtcaggccc cgccggacca ccaggcggtc gccctgctga cgcaccgtga agttggcgtc
      181 gcggaccaca cgacgtaggt gccgcccgcc gaccccgagg accgtcggac caagccagct
      241 caccgcggca ccgttgccgg tcgcgaaacc caccaccagc gtcggcgtcg cgagggcgac
      301 gaacaccgcg ccgccgctgt acagggtggc ctggatgagg cgggtattgg gaactcgcaa
      361 cgctgcgatc gccgaagcga ccggcgcagc gcctgccgca gggtgggtcc cagagtcggt
      421 cagagactga gtcgcagtgg cacgaccggc gtcctgcgcc tcgtcgggtc ggtccgccag
      481 agccagcagc agctcgcgga cctcctgggc tctcgagtcg gtgaggaacg ccagcttcag
      541 gtgggagtcc cggccgccgg ccgactggac gaccacttcg gacagcccgg tcaaccgggc
      601 cagcaccggc cgcgagatgt ccacggcctg gatgcggtcg aacggcacct ggcggtgctg
      661 ccggaacagc aaaccgtgcc ggagctcgag gaacgccgca ccgatccgga acttcgagac
      721 ccgccaggac acccaggccc caccgaggat cgccccgagc agcacggcgg cgcccaccgc
      781 ggcatagagc ggatggccct gggtggggtc gtccgccgca gagccgaaga tgcggttcac
      841 ctgctggctg aacacgtagc ccaccgcgcc gacgaacgcc accccgccgc gcaggaacgg
      901 ggacaacggg tgcaggtgct gccagcccgt ggtggcaggg tcatcgccag cgtcgacagc
      961 gtcgctgtcc tcgagcggag gctcggtcac aggcccgctc gctgggactc accacgagcg
     1021 gcgagccgct ggcgcagcgt ctcggcctcg gccacgggca gcccggggat gtgggcgctc
     1081 agctgcgggc tggctgtgtg cagggcgacc tcggcaatgc ccaacatccg gtcgagcgga
     1141 ccactgtgca cgtccacgta ctgcagtcgc ccatagggga cgctgaccag cgtgcgaaag
     1201 atccggccgc gtcgcacgac tagctcctcc tccagctcga cccagctgat ggctgacacc
     1261 tggcgcagca cgacccacgt ccccgcggcg cccaccaccg cgaccgcgac caccgcccac
     1321 caccagccgt cagcgacctg cagtgcgagc gctgccgcaa cgcccagagg cagcaccagg
     1381 gctgccgcca gcagcgtcag gcgggccggg acgagcttcg tggagactgg ccgccacggc
     1441 atacccgagt cgtcgaacag gcggacttcc ggacgctcgc ggaagggtgc cgggggcgtg
     1501 tcactcaccc cgccaaccta
//
LOCUS       DASYFY010000384         5889 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1289315, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000384 DASYFY010000000
VERSION     DASYFY010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5889
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1289315"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..753)
                     /gene="hemQ"
                     /locus_tag="VGN19_07645"
     CDS             complement(52..753)
                     /gene="hemQ"
                     /locus_tag="VGN19_07645"
                     /EC_number="1.3.98.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide-dependent heme synthase"
                     /protein_id="HEV7195796.1"
                     /translation="MTGKPSPSRIREINASLRYAMWSVFSVTAPLGDDRDVMAKEVEA
                     LFERLEAEGVVTRGVYDIGGLRPEADFMVWWHAERIEDIQAAYRAFLRTDLGHLLEPT
                     WSAAALHRPAEFNKSHIPAFLADEDPKAFICVYPFVRSYDWYLLEDGERRDMLREHGQ
                     LARDYPDVRANTIASFALNDYEWVLAFEADELHRIVDLMRDLRASRARMHVREELPFH
                     TGRRVEVGELLASLR"
     gene            complement(764..2203)
                     /gene="hemG"
                     /locus_tag="VGN19_07650"
     CDS             complement(764..2203)
                     /gene="hemG"
                     /locus_tag="VGN19_07650"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004729 - oxygen-dependent
                     protoporphyrinogen oxidase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEV7195797.1"
                     /translation="MVGTRIVIVGGGIAGLAAAWEISSAMPEALITVLDAGDRPGGKL
                     RREPVAGVAVDVGAEAVLARRPEALTLMTEVGLDAEVENPATTSASIWSRGDLHPLPK
                     GTLLGIPSRPSAALGILSPSEVARAEHEEPWPGGEFDDVSLGDYVATRLGDAVVDRLV
                     EPLLGGVYAGQSRSLSLRACVPALFDAVSRGESLTLAARAAASNGEVSDEPAPVFAGL
                     AGGVGRLAEVLCERLRFRGVTIRSGTIARELHREPDSSGGGWSLVVGSRAQPGRVPAD
                     AVVLAVPATPASRLLAPHCPQGAHELAGIQYASMAIVTLAVASTGRGADRAPLRGSGF
                     LVPPVEGRTIKASTFTSTKWRWAAQAAEDLSFLRASVGRHGETSDLQRPDSELVALAV
                     AEVSEALGHQLPPLVDAHVQRWGGALPQYAVGHLARVARIRAATAALPGLALAGAAYD
                     GVGVPACIASGRAAGQSVTTHLSSRPGGA"
     gene            2327..3331
                     /locus_tag="VGN19_07655"
     CDS             2327..3331
                     /locus_tag="VGN19_07655"
                     /inference="COORDINATES: protein motif:HMM:NF025616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HEV7195798.1"
                     /translation="MFRDRHRSTQFATGAGLALILAAAGCSSAGGQASSGAARVDSHT
                     MVGSAPGQGAVGAPSGVGVGNGTSAVPGAKTGSAASPATTAIDPAALQSTDELARQAS
                     IALQVANIGQAVARVQAATAAADGIVLAENIGTPDGGPVPLADSSKVSATTYGEMTVS
                     VPSDKLDAVLGELGSVGKVIRSSSSSQNVGAQIVDAQSRLATMRVSVERVRGFLNKAT
                     DLTQVVTLEAELTRRESDLEAMEAQLASLKGSVARSPIQVSLTTEPTVIVPPAPATGF
                     LAGLTNGWKAFAASVTVVLTVVGAVLPFAVLALIIGLPVWVVLRRRRPVPTPPEVVVP
                     "
     gene            complement(3386..4432)
                     /gene="hemE"
                     /locus_tag="VGN19_07660"
     CDS             complement(3386..4432)
                     /gene="hemE"
                     /locus_tag="VGN19_07660"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEV7195799.1"
                     /translation="MTSDRPSPQDSALVKAARQRPVPHTPVWFMRQAGRSLPEYRAVR
                     EGVGMLESCRRPDLVTEITLQPVRRHGVDAAIFFSDIVVPLAAVGVDLDIVPGVGPVV
                     AKPIRTRADLDRLPALTSEHVPYISEAVRLLVAELGETPLIGFAGAPFTLASYLVEGG
                     PSKNHEHTKALMYGDPQLWHDLCARLAQISGTFLDIQAAAGASVVQLFDSWVGALPRA
                     DYERFVLPHSTAALAAVAPRGIPTIHFGVGTGELLASMGAAGADVVGVDYRVSLTDAL
                     ARLDGRYAVQGNLDPALLFAPWEALEAKVRSIVEEGRAAPGHIFNLGHGVLPDTDPEV
                     LTRVVELVHEVSAR"
     gene            complement(4458..5288)
                     /locus_tag="VGN19_07665"
     CDS             complement(4458..5288)
                     /locus_tag="VGN19_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEV7195800.1"
                     /translation="MLSLLALASSACWGTSDFFAGLRSKTLPAAAVVAWSQGLALALL
                     TVVMSMRGFGGPTGWVPWAVAAGISGSGALVCFYAALSTGTMGVVAPVASLGVVVPVL
                     LGVVTGDQPPVLAWVGMAVAVLGVALASGPELTGSLSPRPLVLACIAALGFGLALFFL
                     DRGSRVSLLHTLWGMRATSVTMFAVAGLLLRRSGGVGARDLPALAVIGIGDLSANALF
                     AYASSHAAVSISSVLGSLYPVVTVLLARFVLGERLRRVQSVGVGVSLLGVAAIALARA
                     "
     gene            5383..>5889
                     /locus_tag="VGN19_07670"
     CDS             5383..>5889
                     /locus_tag="VGN19_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3000 domain-containing protein"
                     /protein_id="HEV7195801.1"
                     /translation="MGSRTVPGDQSPEFAQALSDLRAARLRPEIRLTEVPAPQRIAPY
                     AVALTAEVVGAAADEDELASGRFVLLHDPSVPDPWDGAWRAVTFARAELEPELANDPM
                     LGAVGWSWLTDALESHQLGFTAEAGTVTRVVSESFAGLADRPASVEMEVRASWTPVAG
                     NVGAHLVAW"
BASE COUNT          958 a         2134 c         2016 g          781 t
ORIGIN      
        1 ccgaagggcc ccagatgtca tcacgcagaa ggcgcgctgt cacggtgggt gctagcgcag
       61 gctcgccagg agctcgccga cctccacccg gcgaccggtg tggaacggga gctcctcgcg
      121 gacatgcatc cgcgcccgcg acgcacgcag gtcacgcatg aggtccacga tgcggtgcag
      181 ctcgtccgcc tcgaacgcca ggacccactc gtagtcgttc agagcgaacg acgcgatcgt
      241 gttggcgcgc acatcggggt agtcacgggc cagctgcccg tgctcgcgca gcatgtcgcg
      301 ccgctcgcca tcctccaaca ggtaccagtc gtacgaacgc acgaacgggt agacacagat
      361 gaacgccttg gggtcctcgt cggccaggaa cgccgggatg tggctcttgt tgaactcggc
      421 gggacggtgc agcgcggccg cggaccacgt cggctcgagc aggtgaccga ggtcggtacg
      481 taggaacgcg cggtaggcag cctggatgtc ctcgatgcgc tcggcgtgcc accacaccat
      541 gaagtcggcc tcgggacgca gacccccgat gtcgtagacc ccgcgcgtga cgaccccctc
      601 ggcctcgagc cgctcgaaca gcgcctcgac ctccttggcc atcacgtccc ggtcgtcacc
      661 gagtggcgcg gtcacggaga acaccgacca catcgcgtag cgaagagatg cgttgatctc
      721 acggatgcgg gagggcgaag gcttgccagt catggagtca ttctcacgcg ccgcccgggc
      781 gcgagctcag gtgggtcgtc accgactgcc cggccgcgcg tccgctggcg atacaggccg
      841 gcaccccgac cccgtcgtat gccgcgccgg ccagggccag cccaggcagg gccgcggtgg
      901 cggcccggat ccgagcgacc ctggccagat gccccaccgc gtactgcgga agggcaccgc
      961 cccagcgttg gacgtgcgcg tcgaccagcg gcggaagctg gtgacccaga gcctcgctga
     1021 cctcagcgac ggccagcgcg acgagctcgc tgtcgggtcg ctgcaggtcc gaggtctcgc
     1081 catggcgtcc gacggaggca cgcaggaacg acaggtcctc cgccgcctgc gccgcccaac
     1141 gccatttcgt cgaggtgaac gtgctcgcct tgatggtgcg accttccacc ggtggcacga
     1201 gaaatcccga gccgcgcagg ggagcccgat ctgcgccgcg tccggtggat gccactgcca
     1261 gggtcacgat ggccatggag gcgtactgga tcccggccag ctcatgagct ccttgcgggc
     1321 aatggggggc gagcagtcgg ctcgccggtg tcgccgggac ggccaggacg accgcatccg
     1381 cggggactcg gccgggttgg gctcgcgagc cgacgacgag ggaccatccg ccgccgctgc
     1441 tgtcgggttc gcgatgcagc tcacgggcga tcgtcccgct gcgaatggtc actccacgga
     1501 agcggagccg ttcgcagagg acttcggcca gccggcctac gccgccagcc agcccggcga
     1561 agacgggggc tggctcgtcg gagacctccc cgttcgacgc agccgcgcga gcagccaacg
     1621 tgagcgactc tccccggctg accgcgtcga acaacgccgg cacgcaggca cgcagcgaca
     1681 gggaccgcga ctgcccggca tacacgcccc cgagcagcgg ctccaccagt cggtcgacca
     1741 ctgcgtctcc caaccgggtg gccacgtagt cccccagcga tacgtcgtcg aactccccgc
     1801 cgggccacgg ttcctcgtgc tctgcgcggg ctacctcgct cggggagagg atgccgagtg
     1861 ctgccgacgg ccgcgagggg atgcccagga gcgtgccttt cggcaggggg tggaggtcgc
     1921 cccgtgacca gatcgatgcc gacgtcgtcg ccgggttctc gacctcggcg tcaagcccga
     1981 cctcggtcat cagggtcaac gcctccggcc ggcgcgccag caccgcctcc gccccgacgt
     2041 cgaccgccac ccccgcaaca ggctctcggc gaagcttccc gccggggcgg tcaccggcgt
     2101 ccagcaccgt gattagcgcc tccggcatgg cgctggagat ctcccaagcc gcggcaagac
     2161 cggcgatgcc gccaccaacg atgacgatgc gtgtcccgac catgggcaca ccctttcaag
     2221 atcgtgactg tttcgacacc accggggcgg aaccggtgac ccgggcgccg gggtcgaagg
     2281 ggtattcccg atccacttca gtgacacgac cgaccagggg gtcgccatgt tccgtgatcg
     2341 tcaccgcagc acacagttcg cgacgggtgc cggtttggca ctcatcctgg cggcagccgg
     2401 gtgcagctcc gcgggcggcc aggcgtcgag tggcgccgcc cgcgtcgact cgcacacgat
     2461 ggttggttcc gccccggggc agggcgcagt gggcgcgccg tcgggcgtcg gggtcgggaa
     2521 cggcacctcc gccgttcccg gtgccaagac cggatcggcg gcctctccgg cgaccaccgc
     2581 gatcgaccct gccgccctgc agagcaccga cgagctggct cgtcaggcgt cgatcgcctt
     2641 gcaggtcgcc aatattggcc aggccgtggc cagagtgcag gcggccaccg ccgcagcgga
     2701 cgggatcgtc ctcgcagaga acatcgggac cccggacggc ggtccggtgc ccctggccga
     2761 ctcgtcgaag gtctccgcca ccacgtacgg cgagatgacg gtctcggtgc cgtcggacaa
     2821 gctcgacgcc gtgctcggcg agctgggctc ggtgggcaag gtgatcaggt cgagcagctc
     2881 cagccagaac gtgggggcgc agatcgtcga cgcccagtcg cgactggcca ccatgcgagt
     2941 cagtgtcgag cgcgtccgcg gcttcctcaa caaggccacc gacctgaccc aggtcgtcac
     3001 tctcgaggca gagctcactc ggcgtgagtc cgacctcgag gcgatggagg cccagctcgc
     3061 ttcgctcaag ggcagcgtcg ctcggtcgcc gatccaggtc agcctgacca ccgagcccac
     3121 ggtgatcgtg ccgcccgcac ccgccaccgg atttctcgcc ggcctgacca acggctggaa
     3181 ggcttttgcc gcctcggtca cggtggtgct caccgtggtc ggcgcagtgt tgccgttcgc
     3241 cgttctcgcc ttgatcatcg gcctgccggt gtgggtggtc ctgcgtcggc gtcgtcccgt
     3301 gccgacccca cccgaggtcg tcgtgcccta agtggcgggc accacatcag cgtgcgctgg
     3361 acggcgacca cttcaggcct accgctcagc gcgcgctgac ctcgtgcacc agctccacaa
     3421 cgcgggtcag gacctccgga tcggtgtcag gcagaacccc gtgacccagg ttgaaaatgt
     3481 gcccgggggc ggccctaccc tcctcgacga tgctgcgaac cttcgcctcc agggcctccc
     3541 agggggcgaa gagcagtgcg gggtcgaggt tgccttgcac ggcatacctc ccatcgaggc
     3601 gcgcgagcgc atcggtgagc gagacgcggt agtccacccc caccacgtcc gcgccggcag
     3661 cgcccatcga cgccagcagc tcaccagtgc ccaccccaaa gtggatggtg ggtatgccgc
     3721 gtggtgcgac ggcggccagc gccgcggtcg agtggggcag aacgaagcgc tcgtagtcgg
     3781 cccgcgggag cgcgcccacc cacgagtcga acagctggac gaccgacgcg cccgcggcgg
     3841 cctggatgtc caggaaagtc cccgagatct gcgcgagccg ggcgcacagg tcatgccaca
     3901 gctgcggatc cccgtacatc aacgccttgg tgtgctcatg gttcttgctc ggcccaccct
     3961 cgaccaggta gctcgccagc gtgaacggcg ctcccgcgaa accgatcagc ggggtctcac
     4021 ccagctccgc caccagcagc cgcacagcct cgctgatgta gggcacatgc tccgaagtca
     4081 gggccggcaa ccggtcgagg tccgccctcg tccggatcgg tttggccacg accggcccca
     4141 cccccggcac gatgtcgagg tcgacgccga ccgccgccaa cggcaccacg atgtcggaga
     4201 agaagatggc ggcatcgacg ccgtggcgtc gcaccggctg aagggtgatc tcggtgacga
     4261 ggtcggggcg ccggcacgac tccagcatgc ccacgccctc gcgcacggcg cggtactcag
     4321 gcagcgagcg ccccgcctga cgcatgaacc acaccggggt atgtggcaca ggacgctgcc
     4381 tggctgcctt gacgagggcg gagtcctgcg gggaagggcg atcggaagtc accgcaggag
     4441 tctaggtcgc ggtgcgctca ggccctcgcg agggcgatgg ctgcgacccc gagcaggctg
     4501 acccccaccc ccacgctctg gacccggcgc agccgctcac ccagcacgaa ccgcgccagc
     4561 agcaccgtca ccaccggata gagcgacccc agcacgctgg agatgctcac ggccgcgtgc
     4621 gagctggcgt acgcgaacaa cgcgttggcg ctgaggtccc cgatcccgat gaccgccagg
     4681 gccggtagat cccgggcacc caccccaccg ctgcgccgca gcagcaggcc ggccacggcg
     4741 aacatcgtga ccgacgtggc ccgcatcccc cacagcgtgt gcagcaggga gacccgggaa
     4801 ccccggtcga ggaagaacaa ggccaggccg aagccgagcg cagcgatgca ggccagcacg
     4861 agggggcgcg gcgacaggct cccggtgagc tcgggaccgg aggccagcgc gacgccgagc
     4921 acggcaacgg ccatcccgac ccaggcgagc accggaggct ggtcacccgt gaccacgccc
     4981 agcaggaccg gcacgaccac tcccagggag gcgaccggcg cgacgacgcc catggtcccc
     5041 gtggacagtg ccgcgtagaa gcagaccagg gcgccggaac ccgagatccc ggccgcgact
     5101 gcccacggca cccaaccggt tggcccaccg aagccgcgca tgctcatcac caccgtgagc
     5161 agggcgagcg ccagtccctg ggaccacgcg accaccgcgg ccgcaggcag tgtcttggac
     5221 cgcaggccgg cgaagaagtc cgaggtcccc cagcaggcgc tcgaagcaag cgcgagcagg
     5281 gagagcatgg cgggcacgct atcggtcacc ttcgcacagc gcgacacccc gggtggcgcg
     5341 gtgttgccca cgctggggcg cgccgcagca tacgctctga tagtgggcag tcgaacggtc
     5401 cctggagacc aatccccgga gttcgcgcag gcgctgagcg accttcgcgc ggcacgactg
     5461 cgccccgaga tccgtctcac cgaagtcccg gctccacaac gcatcgctcc gtatgccgtg
     5521 gccctcaccg ccgaagtcgt cggcgcggcc gctgacgagg acgagctcgc ctccggacgt
     5581 ttcgtactcc tgcacgaccc ttccgtcccg gacccgtggg acggcgcctg gcgcgcggtg
     5641 accttcgcac gagccgagct ggaacccgag ctcgcgaacg acccgatgct cggcgccgtg
     5701 ggctggtcct ggctgactga cgctctggag tcgcaccagc tggggttcac tgcggaggcc
     5761 gggacagtga cccgcgtggt gtccgagagc tttgccgggt tggcggaccg gccggccagt
     5821 gtcgagatgg aggtccgcgc ctcgtggacc ccggtggcgg gcaatgtcgg cgctcacctg
     5881 gtggcttgg
//
LOCUS       DASYFY010000385         3976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_132550, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000385 DASYFY010000000
VERSION     DASYFY010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132550"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VGN19_07675"
     CDS             complement(<1..328)
                     /locus_tag="VGN19_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006947213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease"
                     /protein_id="HEV7195802.1"
                     /translation="MSATPSGRLMLLDSASLYFRAFFGVPDQRTDPSQPPTNAIRGFL
                     DMIASLVTTHQPTHLVACWDNDWRPQFRVDAIPTYKAHRLLGGSVEAEQTPDDLAPQV
                     PVIRDAL"
     gene            376..798
                     /locus_tag="VGN19_07680"
     CDS             376..798
                     /locus_tag="VGN19_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEV7195803.1"
                     /translation="MEDLDRRIVDLLRADGRMSYTDLGKAMSLSTSAVHQRVRRLEER
                     GVIKRYAAIVDPTALDLPLTAFVSITPLDPAAPDDIPDRLRSITELEACHSVAGEENY
                     ILKARVRTPGDLESLLARIRAIANVATRTTVVLSTPWE"
     gene            complement(809..1294)
                     /gene="ybaK"
                     /locus_tag="VGN19_07685"
     CDS             complement(809..1294)
                     /gene="ybaK"
                     /locus_tag="VGN19_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020074971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HEV7195804.1"
                     /translation="MKRPVIGTPAIAALTRLGLAFEVHTYDHDPAADSFGLEAAVALA
                     VSPTQVFKTLVVNADGGSLAVGVVPVDRQLDLKAMAVALGRKRVTMAEPAVAERITGY
                     VVGGISPIGQKKTLATVIDVSATALARVYVSGGRRGVDLSLAPGDLVAATDATLAPIA
                     R"
     gene            complement(1291..2748)
                     /locus_tag="VGN19_07690"
     CDS             complement(1291..2748)
                     /locus_tag="VGN19_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine 2,3-aminomutase"
                     /protein_id="HEV7195805.1"
                     /translation="MSTVIEQPYIYRHRELVEPDWTRFPGFRDVTAEDWASAQWQRAH
                     CVKNIRQLRELMGDLLTDAFYSDLERDQAERATMSMLVPPQMMNTMVSEMTWAGGTMP
                     TAGQEFTQAFYADPVRRYMLPVFSDRRTDWPSHPHSTRDSLHEHDMWVAEGLTHRYPT
                     KVLAELLPTCPQYCGHCTRMDLVGNSTPVIDKLKLMGKPVDRYAAMLAYLQQTPQVRD
                     VVVSGGDVANMPWRNLEGFLDKLLEIENIRDIRLATKALMGLPQHWLQEDVVAGVARV
                     SAKARARGVSLAIHTHVNSAQSVTPLVAQASKAMLEAGVRDVRNQGVLMRGINDTTEQ
                     LLDLSFALQDDAMITPYYFYMCDMIPFAEHWRLSLAEAQHLQHAMMGYLPGFATPRIV
                     CDVPFVGKRWVHQVDSYDTDRGMSFWRKNYRTSLEAADPASLDQALSRDFVYYDPIYT
                     LPESGQQWWRDQGGHEEAHETALAVAAASRQASLV"
     gene            2835..3887
                     /locus_tag="VGN19_07695"
     CDS             2835..3887
                     /locus_tag="VGN19_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-erythro-3,5-diaminohexanoate dehydrogenase"
                     /protein_id="HEV7195806.1"
                     /translation="MSDTPCSPVGLHRVLEPGQACLPQAARRLDTTATLWPDEVRVRV
                     DTLNLDAASYRQLHDKHAGDGDAIRAEVLDIVATRGKMQNPVTGSGGMLMGTVDEVGP
                     DSGLGLTPGDRIATLVSLSLTPLVITDGLLRWDGRSERVPTDGYAILFGRSIAARLPE
                     DLAPDLALMVMDVCGAPALVARVVGEYAARGAAPTVAVLGGAGKSGSLSLAAAADAGA
                     GRRIAVVPVEREARLLEGTGLADEIVVADARSPLGLSEAVAAAGGPADITVVCVDVPG
                     CEQPAILSTAQGGTIIFFSMATNFAAAALGAEGVAADVRMLVGNGYVPGHAAYALELV
                     RGNAAVRSLFEGRLEE"
BASE COUNT          613 a         1343 c         1372 g          648 t
ORIGIN      
        1 ccagagcgtc gcggatcact ggtacctgag gagcgaggtc gtcaggcgtc tgctctgcct
       61 ccaccgaacc gccgagcagt cgatgggcct tgtacgtcgg gatcgcgtcc acacggaact
      121 gcggccgcca gtcgttgtcc cagcacgcca cgagatgcgt cggctggtgg gtggtcacca
      181 gcgaggcgat catgtccagg aagccccgga tagcgttcgt cggaggctgt gagggatccg
      241 tgcgctgatc gggtaccccg aagaaggccc ggaagtacaa cgacgcggag tccaggagca
      301 tcaagcggcc cgaaggggtg gcagacatgc ggacatgctg ccactgtgcc cccggacctc
      361 agtagggtgg ctgatgtgga agacctcgat cgtcgcatcg tcgacctgtt gcgtgccgac
      421 gggcggatga gctacaccga cctcggcaag gcgatgagcc tgtccacctc tgccgtccac
      481 cagcgggtgc gccgcctcga ggagcgtggc gtcatcaaga ggtatgccgc gatcgtggac
      541 ccgacagccc tggacctgcc gctgaccgca ttcgtatcga tcaccccgct ggacccggcc
      601 gctcccgatg acatccccga ccggttgcgc tcgatcaccg aactggaggc gtgccattcc
      661 gttgcggggg aggagaacta cattctcaag gcgcgcgtgc gcactcccgg cgacctcgag
      721 tcgctgctgg cccggatccg cgccatcgcc aatgtggcga cccgcacgac cgtggtgctc
      781 tcgacgccct gggagtgagg ttcagccctc agcgggcgat cggcgcgagc gtggcatccg
      841 tcgccgccac gaggtcacca ggcgcgagtg agaggtccac gcctcggcgt ccaccggaga
      901 cgtagacccg agccaaggct gtcgcggaca cgtcgatgac ggtcgccagc gtcttcttct
      961 gaccgatggg ggagatccct ccgaccacgt atccagtgat tcgctcggcg acggccggct
     1021 cggccatcgt gacgcgcttg cggcccagcg cgacggccat ggccttgaga tccagctgac
     1081 ggtcgacggg gacgaccccg accgccaacg agccaccgtc tgcgttcacc accagggtct
     1141 tgaagacctg ggtcggggac acggccagcg cgaccgcagc ctccaggcca aaggagtccg
     1201 cagcgggatc gtgatcatag gtgtgaacct cgaaggccag acccagccgg gtcagggctg
     1261 cgatggccgg cgtgccaatg actggccgct tcacacgaga gaggcctgcc gcgaggcggc
     1321 tgcaacggcc agggccgtct cgtgcgcctc ttcgtgtcca ccctggtcgc gccaccactg
     1381 ctggccggac tcgggcagcg tgtagatcgg gtcgtagtac acgaagtctc gcgacagcgc
     1441 ctggtccaac gaggccggat ctgcggcctc cagactggtg cggtagttct tgcgccagaa
     1501 cgacatgccg cggtcggtgt catagctgtc gacctggtgc acccagcgct tgccgacgaa
     1561 cggcacgtcg cacacgatgc gcggcgtcgc gaagccaggc aggtagccca tcatcgcgtg
     1621 ctgcaggtgc tgcgcctccg ccagcgagag acgccagtgc tcggcgaacg ggatcatgtc
     1681 gcacatgtag aagtagtacg gcgtgatcat cgcgtcgtcc tgcagtgcga agctgaggtc
     1741 gagcagctgc tcggtggtgt cgttgatccc tcgcatcagg acaccctggt tgcggacatc
     1801 gcggacccct gcctccaaca tggccttcga cgcctgcgcc accagcggcg tcaccgactg
     1861 tgcgctgttg acgtgagtgt ggatcgcgag cgagacaccg cgggcccgcg ccttggccga
     1921 gacccgggcg acgccagcga cgacgtcctc ctgcagccag tgctgcggca ggcccatcag
     1981 cgccttggtc gccagcctga tgtctcggat gttctcgatc tccagcagct tgtcgaggaa
     2041 cccctcgagg ttgcgccagg gcatgttggc aacgtcgccg cccgacacaa ccacgtcgcg
     2101 cacctgaggt gtctgctgga ggtaggcgag catggcggca taccggtcga cgggcttgcc
     2161 catgagcttc agcttgtcga tgacgggcgt ggagttgcca acgaggtcca tgcgggtgca
     2221 gtggccgcag tactgcgggc aggtcgggag cagctcggcg aggaccttcg tcgggtacct
     2281 gtgggtgagc ccctccgcca cccacatgtc gtgctcgtga agactgtcgc gcgtcgagtg
     2341 cgggtgcgag ggccagtccg tgcgccggtc gctgaacacc gggagcatgt agcggcgcac
     2401 cgggtccgca tagaaggcct gggtgaactc ctggcctgcc gtcggcatgg tcccgccggc
     2461 ccaggtcatc tccgagacca tggtgttcat catctgcggc gggacgagca tcgacatcgt
     2521 ggcgcgctcg gcctggtcgc gctcgaggtc gctgtagaag gcgtccgtaa gcaggtcacc
     2581 catgagctcg cgcagctggc gaatgttctt gacgcagtgt gcgcgctgcc actgggcgct
     2641 ggcccagtcc tctgcggtga cgtctcggaa gcccgggaag cgggtccagt ctggctcgac
     2701 cagctcgcgg tgccggtaga tgtagggctg ctcgatcacg gtgctcatgc atggcaggat
     2761 acgggacagg ttccgatgga ttcgacacca aaccgcaata tttgcgtgat gcatagtcat
     2821 cgataggaga ttctgtgtcc gacaccccct gctcacccgt gggtctgcac cgggtgctcg
     2881 agcctgggca ggcctgtctg ccccaggccg cgcgccgcct cgacaccacc gcgacgctgt
     2941 ggccggatga ggtccgggtc cgcgtggaca ccctcaatct cgatgccgcg tcgtaccggc
     3001 agctacacga caagcacgct ggcgacgggg acgcgatccg cgccgaggtg ctcgatatcg
     3061 tcgccacccg ggggaagatg cagaaccctg tgaccggctc gggcggcatg ctgatgggca
     3121 ctgtcgacga ggtcggcccg gactcgggtc tcgggctgac ccccggtgac cggattgcca
     3181 ccctcgtctc gctctcgctg acgcccctcg tgatcactga cggcctgctc cgctgggatg
     3241 gccgctccga gcgcgttccg acagacggct acgccatcct cttcggccgt tccatcgccg
     3301 cccggctgcc cgaggacctc gcccctgacc tcgccctgat ggtgatggac gtctgcggcg
     3361 cgcctgcgct cgtggctcgg gtagtgggtg agtatgcagc gcgcggcgcc gcgccgacgg
     3421 tcgccgtgct cgggggagca ggcaagtccg gctccctgtc cctggcggcc gcggcggacg
     3481 ccggcgccgg tcggcgcatc gcggtcgtcc cggtcgagcg ggaggctcgg ctcctggagg
     3541 gcaccggcct cgcggacgag atcgtggtcg cggatgctcg cagcccgctg ggtctgtccg
     3601 aggccgtcgc ggccgcaggc ggccccgcgg acataacagt ggtctgtgtc gacgtcccgg
     3661 ggtgcgagca gcccgcgatc ctgtcgaccg cccagggcgg gacgatcatc ttcttctcga
     3721 tggccaccaa cttcgcggcc gccgcgttgg gggccgaggg cgtcgccgcc gacgtccgca
     3781 tgctcgtggg caacggctac gtgcccgggc acgcggcata cgccctcgag ctcgtccgcg
     3841 ggaacgccgc ggtgcgctcc ctcttcgagg gccggctcga ggagtagccg cacgcgtcgg
     3901 gaccaagggc ccgaatcgtc acccttgccc gtggtcggat cgggccatga cgagcgcccc
     3961 cgcccagacc cacgcg
//
LOCUS       DASYFY010000386         4342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1289352, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000386 DASYFY010000000
VERSION     DASYFY010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1289352"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..795)
                     /locus_tag="VGN19_07700"
     CDS             complement(<1..795)
                     /locus_tag="VGN19_07700"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HEV7195807.1"
                     /translation="MSQRRVPKWSELKPLLRPKPLELDARRRRLDSALTIADLREVAR
                     RRTPRSVFDYTDGAAEQEVSLRRARATFAGLEFRPSVLRDVSSIDTTTTLLGRPSALP
                     FGFAPTGFTRMMQHEGERAVVRVAARTGIPYGLSTLGTTSIEDVAAAAPEARKWFQLY
                     VWRDHSAAEDLIRRARAAGFEALVLTVDVPVAGARLRDTRNGFSIPPALTVKTVADAA
                     LHPAWWLNLLTTAPLEFASLTHWEGTVAEMMNALFDPTMTMRDLEWV"
     gene            complement(882..2144)
                     /gene="serS"
                     /locus_tag="VGN19_07705"
     CDS             complement(882..2144)
                     /gene="serS"
                     /locus_tag="VGN19_07705"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEV7195808.1"
                     /translation="MIDIKLLREDPELVRASQRARGEDEGIVEAILTAEQTHRSSLTE
                     FEQLRAQQKSMGKQVAQAQGDDKQALLAHSKDLAARVKQLQADAEAAQTELGALIRQI
                     GNIVEDGVPVGGEDDYTVLETVGSIPDFDFEARDHLALGEALGAIDMERGAKVAGSRF
                     YFLTGVGARLELALLNLGIAQAVEHGFTPMITPTLVKADVMAGAGFIDKHADEVYRLE
                     ADDLFLTGTSEVALAGYHADEILDLSAGPKRYAGWSACYRREAGSHGKDTRGIIRVHQ
                     FHKVEMFTYCRVEDAAAEHQRLLGWEKEMLAKIDVPYRVIDTAAGDLGGPAARKFDCE
                     AWVPTQGRYRELTSTSNCTTYQARRLNTRERDPQGSGTRAVATLNGTLATTRWLVAIL
                     ENHQQADGSVVVPAALQPFLGLEVLKPV"
     gene            complement(2218..2763)
                     /locus_tag="VGN19_07710"
     CDS             complement(2218..2763)
                     /locus_tag="VGN19_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEV7195809.1"
                     /translation="MGDFSDGAGDTVVPDTKDWTWTLERACPECGFEASAVAGSEVAT
                     RALSLTAPWEPVLARPNVRDRPQPSVWSPLEYACHVRDVCRVFEDRVRLMLDQDDPQF
                     ANWNQDETALAERYGSQDPATVAAELREAAARTSTAFASVGDGQWARRGVRSNGTTFT
                     VLTLGQYFLHDLAHHLVDVRA"
     gene            2831..3946
                     /locus_tag="VGN19_07715"
     CDS             2831..3946
                     /locus_tag="VGN19_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEV7195810.1"
                     /translation="MLHDHAGWLLVGAAALILIVALGIAGWAAQPSRRSGGAPLGLRW
                     GRRPHRNEFRPEGTAIDDKPRRRAAVIINPTKFDDVAAVRRRVTARCAELGWDEPLFL
                     LTTEQDPGTGQAEAAISEGVDIVCPLGGDGTVRAVAAGLVGTDTPMGLLPGGTGNLLA
                     RNLDLPVDDLNDALRVALTGQNKRIDVGELTVDMSGEHEKPQKHIFLVMAGLGFDAAM
                     MAGAPERLKAKVGPAAYVVSGARNLRGPQFKVHVEVEGQEAFTRRTRTVVIGNCGKLL
                     GGFVLMPEAVLDDGLLDSVILSPTGVVGWAAIAARLASRRRKGHSRVEHHTSKEIRVR
                     IERPQEVQLDGDPIGKARAISATVLPRALVVRVGSAG"
     gene            4003..>4342
                     /locus_tag="VGN19_07720"
     CDS             4003..>4342
                     /locus_tag="VGN19_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase PA-phosphatase"
                     /protein_id="HEV7195811.1"
                     /translation="MVAFLLPVLLLAFAAREQFGPLVRADQDLVRAATDATRSAGAGT
                     AFIVLQDVSQPVWVYIVASLVAAWAFWFKGLRSRAVWAFVTMMVSWNLGLDAKLVVQR
                     ARPLIAQPITH"
BASE COUNT          637 a         1541 c         1488 g          676 t
ORIGIN      
        1 cacccactcc aggtcacgca tcgtcatcgt ggggtcgaac agcgcgttca tcatctcggc
       61 cacggtgccc tcccagtggg tcagcgaggc gaactccaac ggcgccgtgg tcagcaggtt
      121 gagccaccag gccgggtgca gggcagcgtc ggccacggtc ttgacggtca gcgccggcgg
      181 gatcgagaag ccgttgcggg tgtccctcaa ccgcgcccct gccactggta cgtcgacggt
      241 gagcaccagc gcctcgaagc cggccgccct ggcacggcgg atgaggtcct cggcggccga
      301 gtggtcccgc cagacataca gctggaacca cttgcgggct tcaggtgccg cggccgcgac
      361 gtcctcgatc gacgtggtcc ccaacgtgga gagcccgtac ggtatgccgg ttcgagcggc
      421 caccctgacg accgcgcgtt cgccctcgtg ctgcatcatc cgggtgaacc cggtgggcgc
      481 gaacccgaac ggcagcgcgg acggccgccc caacagggtc gtcgtggtgt cgatcgagga
      541 cacgtcacgc aggaccgacg gtcggaactc caggcccgcg aaggtcgccc gcgcccgacg
      601 caggctcacc tcctgctcgg cagcaccgtc ggtgtagtcg aacaccgacc tgggcgtccg
      661 acgccgagcc acctcgcgca ggtccgcgat cgtcagagcg gagtcgagcc gtcggcgtcg
      721 ggcatcgagc tcgagcggct tggggcgcag cagcggcttg agctcagacc acttcggcac
      781 ccggcgctgg ctcacccacc caacctacga ccgaactacg gctgttgtgc gtgtctcgcg
      841 ctcaacagcc gcgacacaca caacttgcgt agttcggtgg actagacggg cttgagcacc
      901 tcgaggccga ggaagggctg aagcgccgca ggaactacga ccgaaccatc ggcctgctga
      961 tggttctcga ggatcgcgac cagccagcgg gtcgtcgcca gcgtgccgtt gagagtcgcc
     1021 accgcccggg tgcccgaacc ctgcgggtcc cgctcgcgcg tgttcagccg gcgcgcctgg
     1081 tacgtggtgc agttcgacgt cgacgtgagc tcgcgatacc ggccttgcgt cggcacccat
     1141 gcctcgcagt cgaacttgcg cgctgccggg ccgccgaggt caccggcggc cgtgtcgatg
     1201 acgcgatacg gcacgtcgat cttggcgagc atctccttct cccaccccag cagccgctgg
     1261 tgctcggcag cggcgtcctc gacccggcag taggtgaaca tctcgacctt gtggaactgg
     1321 tgcacccgga tgattccgcg ggtgtccttg ccgtgcgacc cagcctcgcg gcggtagcag
     1381 gccgaccagc cggcataccg cttcggaccc gcagacaggt cgaggatctc atcggcgtgg
     1441 tagccggcga gggcgacctc cgacgtgccg gtgaggaaca ggtcgtccgc ctcgagtcgg
     1501 tagacctcgt cggcgtgctt gtcgatgaac ccggccccgg ccatgacgtc ggccttgacc
     1561 agcgtcggcg tgatcatcgg cgtgaaaccg tgctcgacgg cctgggcgat gccgaggttc
     1621 agcagcgcga gctccagtcg cgccccgacg ccggtcagga agtagaaccg cgacccggcg
     1681 accttggcgc cgcgctccat gtcgatggca cccagtgcct cgcccagcgc gaggtggtcc
     1741 cgagcctcga agtcgaagtc gggaatcgag cccaccgtct ccaggaccgt gtagtcgtcc
     1801 tcaccgccga cggggacccc gtcctcgacg atgttgccga tctggcggat cagggcaccc
     1861 agctccgtct gcgccgcctc ggcgtcggcc tgcagctgct tgacgcgcgc ggccaggtct
     1921 ttgctgtggg cgagcagcgc ctgcttgtca tcgccctggg cctgggcgac ctgcttgccc
     1981 atggacttct gctgggcccg cagctgttcg aactcggtca gtgaggacct gtgggtctgc
     2041 tcagcggtca ggatcgcttc gacgatcccc tcgtcctcac cgcgggcacg ctggctggcg
     2101 cggacgagct cggggtcctc gcgcaggagc ttgatgtcga tcaccgggca agcctagcga
     2161 cgggtcgcgg gccaccttca cgcccggacc acgaccgtca accccggacg gtgaccttca
     2221 cgccctgacg tcgacgagat ggtgggccag gtcgtgcagg aagtactggc cgagggtcag
     2281 gaccgtgaac gtggtcccgt tgctccgaac gccacgtcgc gcccactggc cgtcgccgac
     2341 ggacgcgaac gccgtcgagg tgcgggcggc cgcttcgcgc agctcggccg cgacggtcgc
     2401 cggatcctgg ctgccgtagc gctccgccag ggccgtctcg tcctggttcc agttcgcgaa
     2461 ctgcgggtcg tcctggtcca gcatcagccg tacgcggtcc tcgaacaccc ggcatacgtc
     2521 acggacatgg cacgcgtatt ccaagggtga ccacaccgag ggctgcggac ggtcccgtac
     2581 gttcgggcgt gctagcacgg gctcccacgg agcggtgagg ctcagggcac gcgtggccac
     2641 ctctgacccg gccaccgcgg aggcctcgaa tccgcactcc ggacaggccc gttcaagggt
     2701 ccaggtccag tccttggtgt ccggaaccac cgtgtcgccc gcgccatcgc tgaagtcacc
     2761 catgccgccc acggtatgcc gcgtcgcgga cgggccgggg acgcgcccgt gggtgaggta
     2821 gcgtcggccc gtgctccacg accatgcagg ctggctcctc gtcggcgccg ccgctctcat
     2881 cctgatcgtg gctcttggta ttgcaggctg ggcggcacag ccgtcgcgcc gttcgggggg
     2941 tgccccgctg gggcttcggt ggggccgccg accgcaccgc aacgagttcc gaccggaggg
     3001 tacggcgatc gacgacaagc cccgccggcg cgcggcggtc atcatcaatc ccaccaagtt
     3061 cgacgacgtc gcggccgtgc gtcgtcgagt cacggccagg tgcgcagagc tcgggtggga
     3121 cgagcctctt ttcctcctca ccactgagca ggacccggga acgggacagg ccgaggccgc
     3181 catcagcgag ggcgtggaca tcgtctgccc tctgggcggc gacggcaccg tgcgtgccgt
     3241 ggccgcggga ctggtaggca ccgacacccc gatgggactg ctgccggggg gcaccggcaa
     3301 cctgttggcc cgcaacctcg acctgcccgt cgatgacctc aacgacgccc tgcgggtggc
     3361 gttgaccggc cagaacaagc ggatcgacgt gggcgagctg accgtcgaca tgtctggcga
     3421 gcacgagaag ccgcagaagc acatcttcct ggtgatggcc ggcttgggtt tcgacgccgc
     3481 gatgatggcc ggagcgccag agcggctcaa ggccaaggtc ggacccgccg cctacgtcgt
     3541 ctccggcgct cgcaacctgc gcggccccca gttcaaggtg cacgtcgagg tcgagggcca
     3601 ggaggccttc acccgacgga cccggaccgt cgtgatcggg aactgcggca agctgctggg
     3661 cggattcgtc ctcatgcctg aggccgtcct cgacgacggg ctcctggact cggtgatcct
     3721 gtctcccacc ggggtggtcg gctgggccgc catcgccgcc cgtctggcct cccgccggcg
     3781 caagggccat tcgcgggtcg agcaccacac cagcaaggag attcgcgtgc gcatcgagcg
     3841 gccccaggag gtccagctcg acggcgaccc gatcggcaag gcacgggcca tctcagcgac
     3901 cgtgctcccc cgcgccctcg tcgtgcgagt ggggtctgcc ggctgatggt gtggacgccc
     3961 agcccctcac aagccaaacg tctggcacgg ggcgtcgtgg ccatggtggc gttcctcctg
     4021 ccggtcctgc tgctggcctt tgctgcccgt gagcagttcg ggccgctggt gcgggcggac
     4081 caggacctcg tccgggccgc gaccgacgcc acgcgctcgg ccggggccgg gaccgccttc
     4141 atcgtgctcc aggacgtcag ccagccggtc tgggtctaca tcgtcgccag cctggtcgcc
     4201 gcctgggcgt tctggttcaa gggactacgc agccgggccg tgtgggcctt cgtgaccatg
     4261 atggtctcct ggaacctcgg cctggacgcc aagctcgtcg tccagcgggc gcgacccctg
     4321 atcgcccagc cgatcaccca cg
//
LOCUS       DASYFY010000387         1932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_290661, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000387 DASYFY010000000
VERSION     DASYFY010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290661"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..>1932
                     /gene="ettA"
                     /locus_tag="VGN19_07725"
     CDS             274..>1932
                     /gene="ettA"
                     /locus_tag="VGN19_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003786651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HEV7195812.1"
                     /translation="MAQYIYTMVRARKAHGDKVILDNVTLSFLPGAKIGVVGPNGAGK
                     STVLQIMAGMQQPSNGEASLAPDATVGILLQEPPLNEKLDVRGNVEEAVKPIRDALTR
                     FEEVSAAMGEPDADFDALLAEQGELMETIEQHDGWELDARIEQAMDALRCPPGDADVT
                     VLSGGERRRVALCRLLLEAPDLLLLDEPTNHLDAESVAWLEQHLEKYEGTVVAVTHDR
                     YFLDNVAEWILELDRGRAYPYEGNYSTYLETKAARLKVEGAKDAKRQKRLKEELEWVR
                     SGAKARQAKSKARLARYEEMAAEAEKTRKLDFEEIQIPPGPRLGNVVVETADLTKGFG
                     DRVLIDDLSFTLPRNGIVGVVGPNGAGKTTLFKMLVDQEKPDDGEIKVGDTVKVSYVE
                     QSRGGIDPKKTLWQVVSDGLDHIKVGNVEMPSRAYVAAFGFKGPDQQKPAGVLSGGER
                     NRLNLALTLKQGGNLLLLDEPTNDLDVETLTSLEGALLEFPGCAVVVSHDRWFLDRVA
                     THILAYEGDSKWFWFEGNFQDYEKNKIERLGQDSVRPHRATYRKL"
BASE COUNT          354 a          656 c          669 g          253 t
ORIGIN      
        1 ggttccggcc caggagtccg gagcggtcga ccaggcagag cccacggccg aggacgagca
       61 gttggcccgc gagctggccg aggaaatggc cggcgaggac tacaccgggg ggtcgggacc
      121 gttgtacgag ctggactccg agaactcctc cccggaaccg gcgcgcgtct agttgcccac
      181 ggctgggagg atcggaggtg agaacgcacg gggtggggcc gcgatccgtg gccccgcccc
      241 cgctcgcaag acgacggaag gcttcgaagc ccagtggctc agtacatcta cacgatggtt
      301 cgcgcgcgca aggcgcacgg cgacaaggtg atcctcgaca acgtcaccct gtccttcctg
      361 cccggcgcca agatcggcgt cgtcggcccc aacggtgccg gcaagtcgac ggtgctccag
      421 atcatggccg gcatgcagca gccgtccaac ggtgaggcat cgctcgctcc cgacgcgacc
      481 gtcggcatcc tgctgcagga gccgccgctg aacgagaagc tcgacgtgcg cggcaacgtc
      541 gaggaggcag tcaagccgat ccgcgacgcg ctgacccgct tcgaggaggt cagcgcggcg
      601 atgggtgagc ccgacgccga cttcgacgcg ctgctggccg agcagggcga gctcatggag
      661 accatcgagc agcacgacgg ctgggagctc gacgcccgca tcgagcaggc catggacgcg
      721 ctccggtgcc cccccggcga cgccgacgtc accgttctgt ccggtgggga gcgccgccgc
      781 gtcgcgctgt gccggctgct gctcgaggcc cccgacctgc tgctgctcga cgagcccacc
      841 aaccacctcg acgccgagag cgtcgcgtgg ctggagcagc acctggagaa gtacgaaggc
      901 accgtcgtgg ccgtcaccca cgaccggtac ttcctggaca acgtcgctga gtggatcctc
      961 gagctcgacc gcggccgggc ctacccctac gagggcaact actccaccta cctggagacc
     1021 aaggccgccc ggctcaaggt cgagggcgcc aaggacgcga agcggcagaa gcgcctcaag
     1081 gaggagttgg agtgggtccg ctccggcgcc aaggcccggc aggcgaagag caaggcgcgc
     1141 ctggcccgct acgaggagat ggccgccgag gcggagaaga cccgcaagct ggacttcgag
     1201 gagatccaga tcccgccggg tccgcggctg ggcaacgtgg tggtcgagac cgccgacctg
     1261 accaagggct tcggcgaccg tgtgttgatc gacgacctgt cgttcacgct cccgcgcaac
     1321 ggcatcgtcg gcgtggtcgg gcccaacggc gccggcaaga ccaccctgtt caagatgctg
     1381 gtcgaccagg agaagcccga cgacggcgag atcaaggtcg gcgacacggt caaggtctcc
     1441 tacgtcgagc agagccgcgg cggcatcgac ccgaagaaga cgctgtggca ggtcgtctcc
     1501 gacggcctcg accacatcaa ggtcggcaac gtcgagatgc cctcacgcgc ctacgtcgcg
     1561 gccttcgggt tcaagggccc cgaccagcag aagccggccg gtgtgctctc gggtggcgag
     1621 cggaacaggc tcaacctcgc gttgacgttg aagcagggcg gcaacctgct gctgctcgac
     1681 gagccgacca acgacctcga cgtcgagacc ctgaccagcc tggaaggagc cctgctggag
     1741 ttcccgggct gcgccgtcgt cgtgagccac gaccggtggt tcctcgaccg cgtggcgacg
     1801 cacatcctgg cctacgaggg cgactcgaag tggttctggt tcgagggcaa cttccaggac
     1861 tacgagaaga acaagatcga gcgcctggga caagattcgg tccgcccgca ccgggccacg
     1921 taccgcaagc tc
//
LOCUS       DASYFY010000388         7326 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1236897, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000388 DASYFY010000000
VERSION     DASYFY010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7326
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1236897"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VGN19_07730"
     CDS             <1..330
                     /locus_tag="VGN19_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HEV7195813.1"
                     /translation="CPVGVATQDARRARAVDVEDKSQRVMHYQQGTVEEAVKMMASMG
                     AHDPRELSPSQLRKVISAWETRSYAELFEWLAPGQLLAEPPQTWAADWAAADPSAFRP
                     SMSRPRS"
     gene            339..2060
                     /locus_tag="VGN19_07735"
     CDS             339..2060
                     /locus_tag="VGN19_07735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEV7195814.1"
                     /translation="MTTVAELIVEALADHGVTSVWGVVGDALNPVTDAIRREDRLEWI
                     GVRHEEVAAFAASAQAQLTGDLAVCMGTVGPGSIHLLNGLYDAKKSHAPVLAICGQVP
                     LAEVGTDFFQEVDNNRLFSDVAVFAETVTSPEQMPQLLEQAVNAAIGGRGVAVLTLPG
                     DIGGLDLPKGIVAPRFVPAAHPAAASSTAVQAAADAIGADANVTLLVGCGARGAREEV
                     LALADALAAPMVLTIKAKEGLEHDNPYAVGQTGLIGNPAATTAMDDADVLVLVGTDFP
                     YRDWIPSGKTVIQLDARAEHIGRRTAVTHALVGDARATLRVLLPLLSSREPGRHLVKA
                     QERYAEWMTAQRRLAEPGHDETLLGRLRSKADNPDELIRPEAVAMAIDRHAGPDTIFT
                     SDTGMSTVWLARLVPMSNNRRLIGSFNLGSMANAMPMALGAQALDRSRQVVAFCGDGG
                     LMMLLGDLRTAVSYNLPATFVVFNNGRLGMVKLEQEQGGLPEFGTVLDNPDLAAVGRA
                     MGLTTRRVTDPQDLDAAVAEALASTVPYLLDVVTNPDEVAVPGRTKPSQAWGFAIAKA
                     KEHIVSA"
     gene            2143..3132
                     /gene="speB"
                     /locus_tag="VGN19_07740"
     CDS             2143..3132
                     /gene="speB"
                     /locus_tag="VGN19_07740"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019618512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HEV7195815.1"
                     /translation="MIDPVSPRVRSGEVVGPVDASQVPRFAGPATFARLPRMDEVDRA
                     DVAVVGVPFDSGVSYRPGARFGPAHIRQASRLLRPYNPALEVEPFSAQQVVDAGDIAC
                     NPFDIAAAIGQIETGASALSASVARLLTLGGDHTIALPLLRVMAARNGPLAVLHFDAH
                     LDTWDTYFGSPYTHGTPFRRASEEGLIDLEHSMHVGIRGPLYSVEDLPDTERLGFATL
                     TCEEIELQGLGAAVERMRERLGARPVYVSVDIDVLDPAHAPGTGTPEAGGMTSRELLA
                     MIRALSDLDVVSADIVEVAPAYDHAEVTGIAASHVAYELLSVMTCQPRSQHVR"
     gene            3122..4582
                     /locus_tag="VGN19_07745"
     CDS             3122..4582
                     /locus_tag="VGN19_07745"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEV7195816.1"
                     /translation="MSVESPPVGSARIGGVEVRSIDYVPLNERHGKVWSQGPLWFMSN
                     AQIATLAVGTFSITGGGNLLWSLIAIIGGALFGTFFMAFHSAQGPQLGLPQMIQSRPQ
                     FGYMGALLVWAFAYLQYAGFNIFNTILAGDALHATVHGPSKVWIVAATVLAAVVALVG
                     YDLIHGVERWLTLGFLIIFGVLTIAVFTLGYPAGSFDFGGFKWTPFLIQFGAVAGYQI
                     SWAIYVSDYSRYLPPNVTVRKTFFWTYWGSALGAIWLMCLGAALAAWAGSKFDTIASL
                     NSAGDHVFSSFGAIALVFSTLGLISVTALNMYGGSLTLISAIDSFSKVRPTATVRIVT
                     IAVTAVLSLVPALLIGADFLTNFQDFLLLVLYLFIPWTAVNLVDYYIVRRGHYAIAEI
                     FNPRGLYGRWGWRGIAAYVLGFAAMLPFLSTSKYTGFVAHDLKGADISMFVGLPVAGI
                     LYYVFAKSIDVDAETAIAKTEQAELEKVAMHHERPA"
     gene            4579..6048
                     /locus_tag="VGN19_07750"
     CDS             4579..6048
                     /locus_tag="VGN19_07750"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEV7195817.1"
                     /translation="MTSGLPSSDSWADAWQSAEDVRAGRVTSVELVMRALGRIHERQP
                     DLNAFTVVLDESALASARDADEAVRQGAALGALHGIPVSVKDHIWMADTPATNGSLIL
                     RDFLPPVDAVPVARLRAAGAVIVGKTNNPEFCYRGFTDNGVFGLTRNPWDLQRTPGGS
                     SGGAGASVAAGMTPIALGTDGGGSIRIPASFCGVVGHKPTFGLVPKEPGFKGWRTLSV
                     DGPLARSVRDAALMLSVIAGPSAADDLTYPGPPHESYLDAVARPPDLSGLRVAWSADL
                     GMLPVDPDVRAVFAEAVGVLAALGGELVEAAPSTGHPTELWNTIALAEGYSSEGPLLS
                     SRELMSPGIAEIIEAGQGITAGQYVDALHERAGYTRVWAEFFQQYDVLVTPAMQLTAF
                     PVGSQTPDEIEGQPVDPFFDDWCTLCLPANLTGMPATVVPAGFGAGGRPVGLQIMGPR
                     WADSLTLQVASAFAGATPWSTYRPPLQPGPGRSAEGSLR"
     gene            complement(6025..6936)
                     /locus_tag="VGN19_07755"
     CDS             complement(6025..6936)
                     /locus_tag="VGN19_07755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195818.1"
                     /translation="MTTFIMRPQGAFSLRESALFGFGQRLRPGGVGAREPAFDGVMRL
                     AFCVDGDYETQVGVEVRQDDDGVHGVVHGASESSVVERQTARVLSLDHDAREYDRVGE
                     RDPVIKRLQAVAPGLRPPLFYSPYEAAVWAVLSARRPSWQMDRVRSQLAQAHGRVFHL
                     AGLPLAALPTPSALLRVTSFDGIDDARLSRIHGVARAAADGLLDAATLRAMDPQEAMT
                     ALQQLHGIGPFYAALVVIRATGVTDVLPANEPKALELAGRLYADGTPLSVQRFTQVAE
                     SWRPWRTWCTVLLRSAGSRLSPEAAFG"
     gene            7039..>7326
                     /locus_tag="VGN19_07760"
     CDS             7039..>7326
                     /locus_tag="VGN19_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195819.1"
                     /translation="MANLVVHFEIHASEPQRLVDFYAELFGWTFTQFGEMPYWAIDTG
                     EGAMGPDRPGRGINGGLTQRQGNPPERGAPVNGCNVVVGVDGSVDEVFQKGL"
BASE COUNT         1105 a         2556 c         2464 g         1201 t
ORIGIN      
        1 tgccctgtgg gcgtcgccac ccaggacgcc cgccgggcgc gggcggtcga cgtcgaggac
       61 aagagccagc gcgtcatgca ctaccagcag ggcaccgtcg aggaagccgt gaagatgatg
      121 gcctcgatgg gcgcccacga cccgcgcgag ctctcgccca gccagctgcg caaggtcatc
      181 agtgcgtggg agacccgctc gtatgccgag ttgtttgaat ggctcgcccc tgggcaactg
      241 cttgccgaac ccccgcagac gtgggcggcc gactgggccg ccgccgaccc gtccgccttc
      301 cgtccgagca tgtcgagacc caggagctga acgcccccat gaccaccgtt gccgagctca
      361 tcgtcgaagc cctcgccgac cacggggtga cctccgtgtg gggagtggtc ggtgatgcgc
      421 tcaacccggt caccgacgcc atccgccgcg aggatcgcct cgagtggatc ggcgtccgtc
      481 atgaggaggt cgccgcgttc gcggcctccg cgcaggccca gctcaccggc gatctcgcgg
      541 tctgcatggg cacggtcggg cctggttcga tccaccttct caatggcctg tacgacgcga
      601 agaagtcgca tgccccggtg ctggccatct gtgggcaggt gccgctggcc gaggtcggca
      661 cggacttctt ccaggaggtc gacaacaacc ggctcttcag tgacgtcgcg gtgttcgcgg
      721 agacggtgac cagccccgag cagatgcccc agctgctcga gcaggccgtc aacgcggcga
      781 tcgggggccg aggtgtcgcg gtgctcaccc tccccggtga catcggcggg ctcgacctcc
      841 ccaaggggat cgtggcgcct cgcttcgtcc ctgcggccca ccccgccgca gcgtcgtcga
      901 cggccgttca ggctgcggcc gacgccatcg gtgccgacgc caacgtcacc ctgctcgtgg
      961 ggtgcggcgc gcgcggtgca cgcgaggaag tgctcgcgct cgccgacgcg ctcgcggcgc
     1021 ccatggtgct gaccatcaag gccaaggaag ggctcgaaca cgacaacccg tatgccgtgg
     1081 ggcagaccgg gctgatcggc aacccggcgg ccacgacagc catggacgat gcggacgtgc
     1141 tcgtgctggt ggggaccgac tttccttatc gcgactggat tcccagcggg aagacggtga
     1201 tccagctcga cgctcgcgcc gagcacatcg gccgacgcac cgccgtgacg catgcgttgg
     1261 tcggtgacgc tcgggcgacc ctgcgagtgc tgctgccgct gctgtcgtcc cgcgagcccg
     1321 gccgtcatct ggtgaaggcc caggaacgct acgccgagtg gatgacggcg caacgcaggc
     1381 tggccgaacc gggccacgac gagaccctgc tcgggcgtct gcgcagcaag gcggacaacc
     1441 ctgacgagct gatccgcccc gaggccgtgg cgatggcaat cgaccggcac gccgggcccg
     1501 acacgatctt cacgagcgac accggcatgt cgacggtgtg gttggcgcga ctggtgccga
     1561 tgagcaacaa ccgacgactg atcggttcgt tcaacctggg gtcgatggcc aacgccatgc
     1621 cgatggcgct cggggcgcag gcgcttgacc gcagccgcca ggtcgtcgcg ttctgcggag
     1681 acggtgggct catgatgctc ctgggcgacc tgcgcaccgc cgtctcctac aacctgccgg
     1741 cgacgttcgt cgtcttcaac aacggccgac tcggcatggt caagctcgaa caggagcagg
     1801 gcggtcttcc ggagttcggc acggtgttgg acaacccgga cctcgcggca gtgggaagag
     1861 ccatgggtct gaccactcgg cgcgtgaccg atccccagga tctcgacgcg gcagtcgccg
     1921 aggcgttggc atccaccgtg ccctatctgc tcgacgtcgt caccaaccct gacgaggtgg
     1981 ccgtgcccgg ccgcacgaaa ccctcacagg cctgggggtt tgcgatcgcc aaggctaaag
     2041 aacacatcgt cagcgcctga cgagctccgg ctgtttctcc gattgtccgt cggacaacca
     2101 gggtctagcc tcccggtagg cgaggacgaa caaggaggca ccttgatcga tcccgtatcc
     2161 ccacgcgtgc ggagcggaga ggtcgtcggg ccggtcgacg cgagccaggt tccgcgcttc
     2221 gccggtccgg ccaccttcgc gcggctgcct cgcatggacg aggtcgatcg cgccgacgtc
     2281 gccgttgtcg gggttccgtt cgacagcggg gtgagctacc ggcctggcgc gcggttcggg
     2341 ccggcccaca tccggcaggc atcccggctg ctgcggccgt acaaccccgc actcgaggtc
     2401 gagccgttca gcgcccagca ggtcgtcgat gccggcgaca tcgcctgcaa ccccttcgac
     2461 atcgctgcag cgatcggcca gatcgaaacg ggagccagcg ccctgtccgc atcggtcgcc
     2521 cgactgctga cccttggcgg cgaccacacc atcgccttgc ccttgctacg cgtcatggcc
     2581 gcgcgaaatg gacctctcgc cgtgctccac ttcgatgctc accttgacac ctgggacacc
     2641 tacttcggat cgccgtatac ccacggcacc ccgttccgcc gcgcgtccga ggaaggtttg
     2701 atcgacctcg agcactcgat gcatgtgggg atccgtggac ccttgtactc ggtcgaggac
     2761 ctgcccgaca ccgaacggct gggcttcgcc accctcacct gtgaggagat cgagctgcag
     2821 ggcttgggcg ccgcagtcga acggatgcgc gagcggctcg gcgccagacc ggtctacgtg
     2881 tcggtcgaca tcgacgtcct cgacccggcc cacgccccgg gcaccggcac ccccgaagcc
     2941 ggcgggatga cgtcgcgaga gctcctcgcc atgatccgtg ccctctcgga cctcgacgtg
     3001 gtctctgccg acatcgtcga ggtcgcgccc gcctacgacc acgccgaggt gaccggcatc
     3061 gccgcctcac acgtggcata cgagctgctg tccgtcatga cctgccaacc aaggagccag
     3121 catgtccgtt gagtcgccac cggtgggatc cgctcggatc gggggagtcg aggtccgatc
     3181 catcgactac gtgccgctga acgagcggca cggcaaggtc tggagccaag gcccgctgtg
     3241 gttcatgagc aacgcccaga tcgccacctt ggcggtcggc acgttctcaa tcactggggg
     3301 aggcaacctg ctgtggtcgc tgatcgccat tatcggcggg gccctgttcg ggactttctt
     3361 catggcgttc cactccgcgc aggggccgca gctcggtctg ccgcagatga ttcagtcacg
     3421 cccccagttc ggctacatgg gggcgctgct ggtctgggcc ttcgcgtacc tgcagtacgc
     3481 ggggttcaac atcttcaaca ccatcctggc gggcgacgcc ctgcacgcga ccgtccacgg
     3541 tccgagcaag gtctggatcg tcgcggccac cgtgctcgca gccgtggtcg cgctggtggg
     3601 ctacgacctc atccatggcg tcgagcgctg gctgaccctg ggcttcctca tcatcttcgg
     3661 ggtcctgacg atcgccgtgt tcacgctcgg gtacccggca ggctcctttg acttcggcgg
     3721 gttcaagtgg acgccgttcc tgatccagtt cggcgcggtg gccggctacc agatcagctg
     3781 ggcgatctac gtgtcggact actcccgcta cctgcccccg aatgtcacgg tccgcaagac
     3841 gttcttctgg acctactggg gctcagcact gggtgcgatc tggctcatgt gtctgggtgc
     3901 cgccctggcc gcgtgggccg gctcgaagtt cgacacgatc gcctcgctca actccgctgg
     3961 cgaccacgtg ttcagcagct tcggtgccat cgcgttggtc ttctccacat tgggcctgat
     4021 ctccgtcacc gcgctgaaca tgtatggcgg atcgctcacc ctgatcagcg ccatcgactc
     4081 gttctcgaag gtccgcccca ccgcgacggt gcggatcgtc acgatcgcgg tgactgcggt
     4141 gctctctctg gtgcctgcct tgctgatcgg ggccgacttc ctcacgaact tccaggactt
     4201 cctgctcctg gtgctctacc tgttcatccc ctggaccgcg gtcaacctgg tggactacta
     4261 catcgtgcgt cgcggccact atgcgattgc ggagatcttc aacccccgtg gtctctacgg
     4321 caggtggggc tggcgcggga tcgccgccta cgtgctgggc ttcgcggcga tgctgccgtt
     4381 cctcagcacg agcaagtaca ccggatttgt cgcccatgac ctcaagggag ctgacatctc
     4441 gatgttcgtc ggccttccgg tcgctggaat cctgtactac gtgttcgcca agtcgatcga
     4501 tgtggacgcc gagaccgcga tcgccaagac cgagcaggcg gagctggaga aggtggcgat
     4561 gcaccacgag cgaccggcgt gacctccggg ctgccttcgt cggacagctg ggccgatgcg
     4621 tggcagtcgg ctgaggacgt ccgcgctggc cgggtcacct ccgtggagct ggtcatgcgg
     4681 gcgttgggcc gcatccacga gcggcaaccg gacctcaacg ctttcaccgt ggttcttgac
     4741 gagtcggccc tggcctcagc gcgcgacgcc gacgaggcgg tgcgccaggg cgcggcgttg
     4801 ggggccctgc acggcatacc ggtgtcggtc aaagaccaca tctggatggc cgacaccccg
     4861 gcgacgaacg ggtcgctcat cctgcgtgac ttcctgccac ctgtcgacgc cgtcccggtc
     4921 gcccggctgc gggccgcggg agcggtcatc gtgggcaaga ccaacaaccc ggagttctgc
     4981 taccgcggct tcaccgacaa cggggtcttc ggcctgaccc gcaacccctg ggaccttcag
     5041 cgcacccccg gcggctcgag tggtggcgcg ggagcatcag tcgcggcggg gatgacgccg
     5101 atcgcactgg gtaccgacgg tggcgggtcc atccggatcc cggcgtcgtt ctgcggggtg
     5161 gtggggcaca agccgacgtt cggcctggtg cccaaagagc ctggcttcaa aggctggagg
     5221 acgctctcgg tcgacggtcc gctggctcga tccgtgcgcg acgcggcact gatgctctcg
     5281 gtgatcgccg gcccttcggc ggcggacgac ctgacgtacc cgggcccacc ccacgagagc
     5341 tacctggacg ccgtcgcgcg cccgcctgac ctgagcgggc ttcgggtggc ctggtccgcg
     5401 gacctcggga tgctgccggt cgacccggac gtccgggccg tcttcgccga ggcggtcggc
     5461 gtcctggccg cgctcggcgg cgagctggtt gaggccgcgc cctccaccgg acatccgacc
     5521 gaactgtgga acacgatcgc cctcgccgag ggctactcct ccgagggccc tctcctgtcg
     5581 tcgcgagagc tgatgtcacc ggggatcgcc gagatcatcg aggcggggca agggattacg
     5641 gctggccagt acgtcgacgc gctccacgaa cgggccggct acacccgcgt atgggccgag
     5701 ttcttccagc agtacgacgt cctcgtcacc ccggcgatgc agctgaccgc gttcccggtc
     5761 gggtcgcaga caccggacga gatcgaaggc cagcccgtgg atccgttctt cgacgactgg
     5821 tgcaccctct gcctgccagc gaacctcacg gggatgccag ccaccgtggt acctgccggg
     5881 ttcggcgccg ggggacggcc ggtggggctc cagatcatgg ggccgaggtg ggctgactcg
     5941 ctcactcttc aggtcgccag tgccttcgcc ggtgcgaccc cgtggagcac ctaccggccg
     6001 cccctgcaac cgggccctgg gcggtcagcc gaaggcagcc tccggtgaca ggcgcgatcc
     6061 cgctgagcgg agcagcaccg tgcaccatgt gcgccagggc cgccaggact cggcgacctg
     6121 ggtgaacctc tggacgctca gtggggtgcc gtccgcgtac agccggccgg ccagctcgag
     6181 cgccttcggc tcgttcgccg gcaggacgtc ggtgactccc gtggcgcgaa tgacgaccag
     6241 ggcggcatag aacggtccga tgccgtggag ctgctgcagc gcggtcatcg cctcctgggg
     6301 gtccatcgcg cgcaaggtcg ctgcgtcgag cagtccatcg gccgccgctc gggccacccc
     6361 atggatccgc gacagccttg cgtcgtcgat gccgtcgaaa ctggtcactc gcagtagtgc
     6421 ggacggggtg ggcagcgcag ccaacggcaa accggcgagg tggaaaaccc gaccgtgcgc
     6481 ctgggccagc tgggagcgca ccctgtccat ctgccagctc ggcctccgcg cgctcagcac
     6541 ggcccacacg gcagcctcgt agggcgagta gaacaggggc ggccgcagcc ctggcgcgac
     6601 tgcctggagc cgcttgatga cggggtctcg ctcgcccacc cggtcgtact ccctggcgtc
     6661 gtggtccagg gacagcacgc gggcggtctg ccgctcgacg acggaggact cggacgcccc
     6721 gtggaccacg ccgtggacgc cgtcgtcgtc ctgccgcacc tcgacgccga cctgcgtctc
     6781 gtagtcgcca tccacgcaga aggccaaccg catcacgccg tcgaacgccg gctcccgcgc
     6841 cccgacgccg ccgggtcgca ggcgctgccc gaacccgaag agcgccgact cccgaaggct
     6901 gaacgctccc tggggccgca tgatgaaggt cgtcatggga ccagcgtgcc agcgggcacc
     6961 gacaggctca gctggcctca gctggcctca gctgggcggc gctggcgtag cgtaggtgaa
     7021 ctggccaagg gaggcgtcat ggcgaacctc gtcgtgcatt ttgagattca tgcgtccgag
     7081 ccgcagcggc tggtggactt ctacgcggag ctgttcgggt ggaccttcac ccagttcggc
     7141 gagatgccgt actgggccat cgacaccggt gagggcgcca tgggccctga ccgaccgggc
     7201 cgcggcatca acggtggcct gacccagcgc cagggcaacc ccccggagcg tggcgctccg
     7261 gtcaacggct gcaatgtcgt cgtcggggtc gacggcagcg tcgacgaggt cttccagaag
     7321 gggctg
//
LOCUS       DASYFY010000389         6160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_79780, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000389 DASYFY010000000
VERSION     DASYFY010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6160
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79780"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..2537)
                     /locus_tag="VGN19_07765"
     CDS             complement(138..2537)
                     /locus_tag="VGN19_07765"
                     /inference="COORDINATES: protein motif:HMM:NF003619.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoketolase family protein"
                     /protein_id="HEV7195820.1"
                     /translation="MPPTTQVRYDAHDLELDLRWWAAANYLTVGQIYLGANALLREPL
                     TLAHIKPRLLGHWGTSPGLSMLYCLLNRHIRNTDTDWLYVTGPGHGGPALVAAAWLDG
                     TYSEIYPHIRDDAAGVLALFRQFSSPGGVPSHVSVQTPGSIHEGGELGYALVHAAGAA
                     FDHPDLTVACVVGDGEAETGPLAASWRLPTFLNPRRDGAVLPILHLNGYKIAGPTVLG
                     RTSDKDVESYLSSQGWDPVTISGDDPSQVFPALYSALVKAHQRIRAIQTRAREHEGPS
                     EPVRHAWPAIILRTPKGWTGPAVVDGRQVEGTNLSHQVPLSALADHPEHLVMLEQWMH
                     TYRPEELFDEHGLVAELRALAPQGDKRLSATPYANGGRLRQELPPLVLGTYEVDVPAP
                     GRVWVENTLSAGELMRDLYAATARPDGGGTFRLFSPDETASNRLQSVFEVTDRCFMGP
                     LLPTDESLGPDGRVMEVLSEHLCQGWLEGYVLSGRHGVFATYEAFAMVSASMAIQHVK
                     WLQHAQDLPWRAPVSSLNVLLTSTCWRNDHNGFSHQGPGLIDSLLPLAPGVVRVWLPP
                     DANTTLSITDHCLRSTDHVNLIVVDKQKHLQYLTLEQAHRHCADGAGVWDWASTCGPD
                     QEPDLVLACAGDVPTQEALAAVELLHEHVPELRVRFVNVVDLMALLPENDHPHGFADS
                     RFDDLFTSDRHVVFAFHGYPRAVHQLIHGRSNPGRFHVRGFNEQGTTTTPFDMVVLNR
                     MSRFHLAKEALRRSHRRVTGWEDLARLCDDRLAAHDAYIREHLADLPAVAGWTWRGLG
                     L"
     gene            complement(2612..3496)
                     /locus_tag="VGN19_07770"
     CDS             complement(2612..3496)
                     /locus_tag="VGN19_07770"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7195821.1"
                     /translation="MSTSASPRRHAVVVGIDGGAAAYRALDVAVEQAQRSHLPLHILH
                     AIRNGLVPWTPERLQAHEDIAKRGYERAVQAAPNLDITYASHVEEPAAALVKASYRAS
                     LVVIGAGGHDLPAAVLLGATAHQVASHARCPVMVVPDSSEWSTTGPVVVGVDAAEHSV
                     PAVEFAFAEASSRGAELIAVHTWWWEEPGPFLAGSEREDEWVGVAETQKVIVAEMLAG
                     WQEKYPDVTVHSTAVRGQAAVVLQQVSENAQLLVVGSRGRGGFVGLLIGSVSSRVLHQ
                     AKCPTVVVPSIRLTPPLG"
     gene            complement(3602..4117)
                     /locus_tag="VGN19_07775"
     CDS             complement(3602..4117)
                     /locus_tag="VGN19_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/DrsH-like family protein"
                     /protein_id="HEV7195822.1"
                     /translation="MTITDTASGPVPQFDTGNQTGRKLAIICSKGSLDMAYPGLILAN
                     AALGEGVETHLFFTFWGFDMITTKTMNDLKFTPLGNTATHMPQGLGGLPGITHLATSR
                     LRKAIADLDVPDVPEFLEQIVASGGHLWACRMSADLNHLTEDDLYEQVEGIISASDFI
                     EKTEGAQLLFI"
     gene            complement(4155..4469)
                     /locus_tag="VGN19_07780"
     CDS             complement(4155..4469)
                     /locus_tag="VGN19_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HEV7195823.1"
                     /translation="MPVLTIENRTVSVDAEGFLTDYVDWDDDLARTLAHQIGITLTDR
                     HWEILRFLRQDFADQGETATLRRTSLRCDIPIRDLFVLFPGKPAKKMAYIAGLPKPRG
                     CV"
     gene            complement(4482..5720)
                     /locus_tag="VGN19_07785"
     CDS             complement(4482..5720)
                     /locus_tag="VGN19_07785"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HEV7195824.1"
                     /translation="MKNLLILGTGTAGTMLANMLRRRLPSRDWAVTTVDRDDGHLYQP
                     GLLFVPFEPAKRHQLTRSRRALLAPEVTFVLGDVDVIEPAAQRVLLTDGRSLDYDYLV
                     IASGTTPRPDQTPGMLGAQWRTSIFDFYTLEGATALARALTDFDHGRLVVHVTDMPIK
                     CPVAPLEFAFLADDWLRNNGRRDRVDLTYVTPLPGAFTKPVASEHLHHMLTDRAITTE
                     PDFLVESIDPQAKTLVSFDQRVIPFDLLVTVPLNMGADFVARSGLGDELNHVRVDPHT
                     FASKVAPNIFAVGDAADLPTSKAGSVAHFAAHTFVDNFMSLIEGEPLSASFDGHANCF
                     IESGNHNALLIDFNYDTEPLPGSYPIPLLGPFQLLKETRTNHLGKLAFRWLYWNVLLP
                     GRPLPLPTSMSMAGKTPVPQ"
BASE COUNT          937 a         1855 c         2291 g         1077 t
ORIGIN      
        1 cgcggactcg tggtcgggtg ggccgccgcg cccgatgtcg tgctggtacc cctcggcaac
       61 ggctcgcccc gagctgggtt cgagcaccgc gtaccgcagc gatgacgaac ccgcattgag
      121 cacgagcacc agctcggtca caggccgagg cctcgccacg tccagccggc tactgccggc
      181 aggtcggcca ggtgctcacg gatgtaggcg tcgtgggcag caagccggtc gtcgcacagc
      241 cgggccaagt cctcccaccc ggtgacccgg cggtgggagc ggcgcagcgc ctccttggcg
      301 aggtggaagc ggctcatgcg gttgagcacc accatgtcga acggcgtggt cgtcgtgccc
      361 tgctcgttga acccgcgcac atgaaagcgc ccggggttgc tgcggccgtg gatgagctgg
      421 tggacggcgc gcgggtagcc gtggaaggcg aagacgacgt gccggtcgct ggtgaacagg
      481 tcgtcgaacc ggctgtcggc aaagccatgc gggtggtcgt tctcggggag cagcgccatc
      541 aggtcgacga cgttgacgaa ccgcacccgc agctcaggaa cgtgctcgtg caacagctcg
      601 acggcggcga gagcctcttg ggtcgggacg tctccggcgc aggccaggac caggtcaggc
      661 tcctggtccg ggccgcaggt gctggcccag tcccagacgc ccgcgccgtc ggcgcagtgc
      721 cggtgcgcct gctcgagggt gaggtactgc aggtgcttct gcttgtccac cacgatgagg
      781 ttgacgtggt cggtgctgcg caggcagtgg tcggtgatcg acagggtggt gttggcgtcc
      841 gggggcaacc agactcgcac cacgcctggg gccagcggga gcagcgagtc gatgaggccc
      901 ggtccctggt gggagaagcc gttgtggtcg ttgcgccagc aggtcgaggt cagcaagacg
      961 ttgagggacg acacgggcgc ccgccagggc aggtcctggg cgtgctggag ccatttgacg
     1021 tgctggatcg ccatcgacgc ggacaccatc gcgaacgcct cgtacgtggc gaacaccccg
     1081 tgccgacccg agagcacgta gccctcgagc cagccttggc aaaggtgttc gctgagaacc
     1141 tccatgaccc gaccgtctgg acccaggctc tcgtcggtcg gtaacagcgg tcccatgaag
     1201 caccggtcgg tgacctcgaa gaccgactgc agccggttgc tggccgtctc gtccggcgag
     1261 aagagccgga acgtgccgcc gccatcgggc cgggccgtcg cggcatacag gtctcgcatg
     1321 agctcgccgg cggacagggt gttctcgacc catacgcggc caggggcggg tacgtccacc
     1381 tcgtaggtgc ccaggaccag cggcgggagc tcctgacgta gccgacctcc gttcgcatag
     1441 ggggtcgcgg acagacgctt gtcgccctgc ggcgccagcg cacgcagctc ggcgaccagg
     1501 ccgtgctcgt cgaagagctc ctcgggccgg tacgtgtgca tccactgctc gagcatgacg
     1561 aggtgctcgg ggtggtccgc cagcgcggag agcggcacct ggtggctgag gttggtccct
     1621 tcgacctgcc ggccgtcgac cacggccgga cccgtccagc ctttgggcgt ccgaagaatg
     1681 atggcgggcc aggcgtggcg caccggctcg ctggggccct cgtgctcgcg ggcgcgggtc
     1741 tggatcgcgc gaatccgttg gtgggccttg accagcgccg agtacagggc cgggaagacc
     1801 tgggacgggt catccccgga aatcgtcacc ggatcccagc cctggctgct caggtagctc
     1861 tcgacgtcct tgtcggaggt gcgaccgagc acggtggggc cggcgatctt gtacccgttg
     1921 aggtggagga tcggcagcac cgctccgtca cgccgggggt tgaggaacgt cggcaatcgc
     1981 caggaggcag ccagcggtcc ggtttcggcc tcgccgtcgc ccaccacaca ggccaccgtg
     2041 aggtcaggat ggtcgaaggc cgcgccggcg gcgtggacga gggcgtagcc cagctcgccg
     2101 ccttcgtgga tgctgccggg cgtctgcacg ctgacgtggc tgggaacgcc gccgggggag
     2161 gagaactggc gaaacagcgc cagcaccccg gccgcgtcgt cgcggatgtg cgggtagatc
     2221 tcgctgtacg tcccgtccag ccaggccgcg gcgacgagcg ctggcccacc gtgcccgggg
     2281 ccggtgacat agagccagtc ggtgtcggtg ttccggatgt gcctgttcag taggcagtac
     2341 agcatcgaca ggccggggct cgtaccccag tggccaagga gacgtggctt gatgtgggcg
     2401 agcgtcagcg gttcgcgcag gagggcgttg gcgccaaggt agatctggcc cacggtgagg
     2461 tagttggctg cggcccacca tcgcaggtcc agctcgaggt catgggcgtc gtaccggacc
     2521 tgggtggtgg gtggcatggg tgtcattgca ccagagcggc ccggctggtt ctagggccga
     2581 tggtcctggg tgggtgctca gcggtgggtg gtcagccgag cggaggtgtc agccggatcg
     2641 aggggacgac gacggtgggg cacttcgcct ggtgcaagac gcggctgctg acggatccga
     2701 tcagcaggcc gacgaatccg cctcgtcctc gactcccgac gacgaggagc tgggcgttct
     2761 ccgagacctg ctggaggacg actgcggcct gtccgcgcac tgccgtcgag tggactgtga
     2821 cgtcggggta cttctcctgc cacccggcca gcatctccgc aacgatgact ttctgagtct
     2881 ccgcgactcc aacccattcg tcttcccgct cggagccggc caggaacggc ccgggctctt
     2941 cccaccacca ggtgtgcacg gctatgagct cggccccgcg gctggaggct tcggcgaacg
     3001 cgaactccac tgcgggcaca gagtgttccg cggcgtcgac accgacgacg acaggtccag
     3061 tggtcgacca ttcgctcgag tcgggcacga ccatgaccgg gcaccgcgca tgcgaagcca
     3121 cctggtgagc cgttgccccc agcagcaccg ctgcggggag gtcgtggccg ccggcgccga
     3181 tgacgaccaa ggatgctctg tagcttgctt tgaccagtgc ggcggctggt tcttcgacgt
     3241 ggctggcgta ggtgatgtcg aggttcggag cggcctggac ggcgcgctcg taaccgcgct
     3301 tggcgatgtc ctcgtgggcc tgaaggcgtt ctggagtcca aggcaccagc ccgttgcgta
     3361 tggcgtgcag gatgtgcagc ggcaggtgcg accgttgggc ttgctcgacg gcgacatcga
     3421 gtgcgcggta tgccgccgcg ccgccgtcta tccctaccac caccgcgtgg cgtcggggcg
     3481 atgcggacgt gctcatgatg atctcctctt agttgggctt ccaccatctg tcggcggccg
     3541 gggccgcgtt aggggcgaaa gtccttgggg cgcggcgctg tcggcgtgga cgcaggtggg
     3601 gctagatgaa cagcagctgg gcgccttcgg tcttttcgat gaagtcactc gcgctgatga
     3661 ttccttcgac ctgctcgtag aggtcatcct cggtgaggtg attgaggtcg gcggacatgc
     3721 ggcaggccca caggtgtccg ccggaggcga cgatctgttc gaggaactcc gggacatcgg
     3781 ggacgtcaag gtcggcgatg gctttgcgca gtcgtgaggt ggcgaggtga gtgatgcctg
     3841 gcaggccgcc gagaccttgc ggcatgtgcg tcgcggtgtt gcccagcggg gtgaacttga
     3901 ggtcgttcat ggtcttggtg gtgatcatgt cgaagcccca gaaggtgaag aacaggtgcg
     3961 tttcgacgcc ctcgcccagt gccgcgttgg cgaggatgag ccccggatac gccatgtcga
     4021 ggctgccctt ggagcagatg atggcgagct tgcgtccggt ctggttgccg gtgtcgaact
     4081 gggggactgg tccggatgcg gtgtctgtga tggtcatggt gagttccttt gtggttaatg
     4141 cggatcggtt ggtttcagac gcagccgcgg ggcttgggca ggccagcgat gtaggccatc
     4201 ttcttggccg gcttgccggg aaacagcacg aacaggtctc ggatggggat gtcgcaccgc
     4261 aggctggtgc gtcgcaaggt cgcggtctcg ccctggtcgg cgaagtcctg gcgcaggaag
     4321 cgcagaatct cccagtgccg gtcggtcagg gtgatcccga tctggtgcgc gagggtgcgg
     4381 gccaggtcgt cgtcccagtc gacgtagtcg gtgagaaagc cctcggcgtc gacgctgacg
     4441 gtgcggttct cgatggtcag gacgggcatg acggactcct tctactgggg tactggggtc
     4501 tttccggcca tggacatgct ggtcggaagg ggcaaaggcc ggccggggag caggacgttc
     4561 cagtacagcc atcggaacgc cagcttcccc aggtggttgg ttcgggtctc tttgagcagc
     4621 tggaacgggc cgagcaacgg gatcgggtag gaccccggca gcggctccgt gtcgtagttg
     4681 aagtcgatca ggagggcgtt gtggttgccg gactcgatga agcagttcgc gtgtccgtcg
     4741 aaggacgcgg acaggggctc gccttcgatc agtgacatga agttgtccac gaacgtgtgt
     4801 gcggcgaagt gggccacgga gccggctttg gacgtgggca ggtcggccgc gtcgcccacc
     4861 gcgaagatgt tcggtgcgac cttcgaggca aaggtgtgcg ggtcgacccg cacgtggttg
     4921 agctcgtcac cgaggccgga gcgcgcgacg aagtcagcgc ccatgttcag gggcaccgtg
     4981 accagcaggt cgaacgggat gacccgttgg tcgaaggaca ccagggtctt cgcctgcggg
     5041 tcgatggact cgacgaggaa gtcaggctcg gtcgtgatgg cccggtccgt cagcatgtgg
     5101 tgaaggtgct cggacgcgac gggcttggtg aacgctcctg gcaacggggt cacgtacgtg
     5161 aggtcgaccc ggtcacgacg tccgttgttt cgtagccagt cgtcggcgag gaacgcgaac
     5221 tccaggggcg ccaccgggca cttgatgggc atgtcggtga cgtggacgac gaggcggccg
     5281 tggtcgaaat ctgtcagagc gcgagcgagt gccgtagcac cctcgagggt gtagaagtcg
     5341 aagatgctgg tgcgccactg cgcgccgagc atgcctgggg tctggtcggg tctcggggtg
     5401 gtcccggagg cgatgaccag gtagtcgtag tcgagggaac gcccgtccgt caggagtacg
     5461 cgctgggctg cgggctcgat gacgtccacg tcgccgagga caaacgtcac ttcgggggcc
     5521 agcagggcgc gtcgcgaccg ggtgagctgg tgccgcttgg ccggttcgaa cgggacgaac
     5581 agcaggccgg gttggtacag gtggccgtcg tcgcggtcga cggtggtgac tgcccagtca
     5641 cgactcggca ggcgccgccg cagcatgtta gcgagcatcg ttccggcagt cccggttccg
     5701 aggatgagca ggttcttcat ggtgtctccc gtgctggcta cttcgacgtt aggagccggt
     5761 cgggtgctgc ggcagtgccg aaagtccttg tatgccgtgt agcggagacg acaggtggtg
     5821 tggcggagtc gacgtggcgc ccacgacaga gcggggcgcc cgcgacaggg cggggccccg
     5881 gacgatatga aatctccagg gcctcgtctg cgtggactag acgaacttcc gcgctatccg
     5941 ggggtttgcg atgatcctcc ggccctcgtc gtgggccttc cttgcgggct tccccgtggt
     6001 ctggatctcg tctaccttcc gaaccgcctc cgttaccggt ggcgtacttc tgttgtcctc
     6061 cttcgcgccg tgccgcgaca gggaccaagg tcctgtgttg gtcgcctgct tgcggcgtcc
     6121 gcctgaacac ggtcagccgc acgtcacgat gacgggcact
//
LOCUS       DASYFY010000390         2777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_132655, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000390 DASYFY010000000
VERSION     DASYFY010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132655"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1208
                     /locus_tag="VGN19_07790"
     CDS             <1..1208
                     /locus_tag="VGN19_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEV7195825.1"
                     /translation="EAPEVHRRVGRVGGAPVTKNFPQDLPSGLAQGPRGPRGPQGPVF
                     AQRNPTDPGRLGRRSVVTLVLSFVVIALAALSVMVGLPYVVLEPGPVANTLGKLSGHE
                     LITVAGAQTYPAKGTLDFTTVRLIGGPGVRVTVWDLLSAKLNPSDAIAPEDLYFPTGV
                     TDQQVQQVNTAEMVDSQQEAIAVALRATGRTVIPHLIITEVAPDAPSASVLKAGDEVK
                     SIDGTPMTSSAQIRTVIGAHKPGDFVQLRLVRNGAEVVVAARTHLSAGRTTIGVFLGL
                     KFTFPIDVKINAGDIGGPSAGTMFALGVYDKLTPGDLTGGQNIAGTGTIDDTGAVGPI
                     GGIRQKLAGAHDGGARWFLAPASNCDEVAGHVPDGLRVVRIATFDEARKAVEAIAANQ
                     AASLPTCTK"
     gene            complement(1227..1763)
                     /locus_tag="VGN19_07795"
     CDS             complement(1227..1763)
                     /locus_tag="VGN19_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013117683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPA1309 family protein"
                     /protein_id="HEV7195826.1"
                     /translation="MTQSSRPVADPLSLAALDTERHVATAGWDQNPRLFALVPTADLM
                     KREPHLRAQLQGHDLVEGALSAVEQENLPRTANLESLLGGIAWPDAVVGAALAIERIV
                     VPPEAERDLPMHPDAAVDALAAHPARQDVRLLVAVTRSGESRCLLRQRAHDSDDQVAM
                     GEDIAPGLVHALRATLEG"
     gene            2052..>2777
                     /locus_tag="VGN19_07800"
     CDS             2052..>2777
                     /locus_tag="VGN19_07800"
                     /inference="COORDINATES: protein motif:HMM:NF015644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HEV7195827.1"
                     /translation="MRLRFGRGPIIPTIAILVALAVIISLASSLWTEVLWYDSVGYEG
                     VFVTELTTKILLFTVGFVLTAALVASSLVIGYRTRPVYAPVTPQQQSLDQYREAVEPL
                     RRIAIFVVPGLLGLLAATGAAGEWKTYLLWRNKVSFGILDPQFGMDLSFFTFTLPWIR
                     FVLGFLTMALVMALLAAAFTHYMYGGLQLQVRAERTTRAARTHLAILLAALVLVRAAT
                     YWFDRYSLLTKDNSLLTGIGYTDA"
BASE COUNT          407 a          969 c          942 g          459 t
ORIGIN      
        1 tggaagcacc agaagttcac cgacgggtcg gacgagtggg tggggctccc gtgaccaaga
       61 acttccccca ggacctcccc tccggactcg cgcaaggccc tcgaggccct cgaggccctc
      121 agggtcccgt gttcgcgcag cggaacccga ccgacccggg ccggctcggg cgacgctcgg
      181 tcgtcacgct cgtgctgtcc ttcgtggtga tcgctctcgc tgccctgtcc gtgatggtcg
      241 ggctgcccta tgtcgtgctc gaaccgggtc cggtcgccaa cacgctgggc aagctgtcgg
      301 gtcacgagct gatcaccgtc gcgggtgccc agacctatcc ggccaagggg actctggact
      361 tcacgacagt gcggctgatc ggcggccccg gggtccgcgt cacggtctgg gacctgctgt
      421 cggccaagct caacccctcg gatgcgatcg cgcccgagga cctctacttc cccaccgggg
      481 tgaccgacca gcaggtccag caggtcaaca ccgcggagat ggtcgactcc cagcaggagg
      541 ccatcgccgt ggcgttgcgg gccaccgggc ggaccgtgat tccgcatctg atcatcaccg
      601 aggttgcgcc ggacgctccc tcggcgtccg ttctgaaggc gggtgacgag gtgaagagca
      661 tcgacggcac ccccatgacg tcgagtgcgc agatccgtac ggtgatcggt gcccacaagc
      721 ccggggactt cgtccagctg cgcctcgtgc gcaacggcgc agaggtggtc gtcgccgcca
      781 ggacgcacct gtcggccggt cgcaccacga tcggggtgtt cctgggcctg aagttcacct
      841 tcccgatcga cgtgaagatc aacgctggtg acatcggcgg accttctgcc ggaacgatgt
      901 tcgcgctcgg cgtctacgac aagctcacgc ccggcgacct gaccggcggc cagaacatcg
      961 ccggcaccgg gacgatcgac gacacggggg cagtcggtcc catcggggga atccgtcaga
     1021 agcttgccgg agcccacgac ggtggagcgc ggtggttcct ggcgccggcg tccaactgtg
     1081 acgaggtcgc gggccacgtg ccggacggtc tgcgcgtggt gcgcatcgcg accttcgacg
     1141 aggcgcgcaa ggcggtcgag gccatcgcgg cgaaccaggc cgccagcctg cccacctgca
     1201 cgaaatagcg gtatgccgcg agcggcctag ccctcgagcg tcgccctcag cgcgtggacc
     1261 agcccgggcg cgatgtcctc acccatggcg acctggtcgt cgctgtcgtg cgctcgctgg
     1321 cgcagcaggc agcgactctc cccgctgcgc gtcaccgcga ccagcaggcg cacgtcctgc
     1381 cgcgcggggt gcgccgccag ggcatcgacg gcggcgtcgg gatgcatcgg cagatcccgc
     1441 tccgcctcgg gcggcacgac gatccgttcg atggccagtg ccgccccgac gacggcgtcg
     1501 ggccacgcga tgcccccgag caggctctcg aggttcgccg tacgcggcag gttctcctgc
     1561 tcgacggcgc tgagcgcgcc ctcgacgagg tcgtgccctt gcagctgagc tctcaggtgc
     1621 ggctcccgct tcatcaggtc agccgtgggc acgagcgcga acaggcgtgg gttctggtcc
     1681 catccggcgg tcgcgacatg tcgttcggtg tccagcgcgg cgagcgaaag ggggtcggcc
     1741 acggggcggg aggactgggt cacgaggcca tggtgccgca cccggcccgg cgcccggcac
     1801 gcggccatgg cacgggaaag gcatcggtgc agcacaggac ggccacagtc ctgtccaagg
     1861 cactcgggaa ccacatcgag cgccggtaag ttggtcccac tagcagcagg cgaccaacgg
     1921 agtcggtcgc acggcagatc gggtgtggtg tgagttcttc tgactggttc ggacccggcg
     1981 ggcccggcag cgaaggcggt gggcgtcccg acggccaagg tcgccccagc ggtcctcgac
     2041 gccccccggc catgcgcctg cgctttggtc gcggcccgat catcccgacg atcgccatcc
     2101 tggtggcgct ggccgtcatc atctcgttgg cctcgagctt gtggaccgag gtgctctggt
     2161 acgactccgt cggctatgag ggcgtcttcg tcaccgagct gacgaccaag atcctgctgt
     2221 tcactgtcgg cttcgtgctc accgcggcgc tggtcgcctc cagcctggtg atcggctacc
     2281 gcacccgtcc cgtctatgcc ccggtgactc ctcagcagca gagccttgac cagtaccgcg
     2341 aggccgtcga accgttgcgc cgcatcgcca tcttcgtcgt tcccgggctg ctcggactgc
     2401 tcgccgccac gggagcagcg ggggagtgga agacgtacct gctgtggcgg aacaaggtgt
     2461 cgttcggcat cctcgacccc cagttcggga tggacctgtc gttcttcacc ttcacgcttc
     2521 catggatcag gttcgtcctc ggtttcctca ccatggccct ggtgatggcg ctgttggcgg
     2581 ctgctttcac gcactacatg tatggcgggc tacagctgca ggtgcgagcc gaacgcacca
     2641 cccgggcggc tcggacgcac ctcgcgatcc tgctggccgc gctcgtcctg gtccgcgccg
     2701 cgacgtactg gttcgaccgg tactcgctct tgaccaagga caactcgttg ctgacgggga
     2761 tcggctatac cgacgcc
//
LOCUS       DASYFY010000391         1890 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1446708, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000391 DASYFY010000000
VERSION     DASYFY010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1446708"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VGN19_07805"
     CDS             <1..216
                     /locus_tag="VGN19_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEV7195828.1"
                     /translation="TVIGMIEGAELAEHENPGEATVHVLRGRVRLVCGDESWEGRSGD
                     LLKVPDARHSLIALEASAVLLTVAKLG"
     gene            complement(228..1040)
                     /locus_tag="VGN19_07810"
     CDS             complement(228..1040)
                     /locus_tag="VGN19_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEV7195829.1"
                     /translation="MPIQITDPADPRVADYVSLTDVALRRRTEPERGLYIAESEKVIR
                     RALRAGHRPRSYLMAERWLTELADVVAQAERDGIPVFVGEHPTIEALTGFHLHRGALA
                     SMQRPVLPTVQSLVAAARRVLVLEDIVDHTNVGAVFRSAAALGVDAILVTPRCADPLY
                     RRAIRVSMGTVFQVPWTRIDPWPGGIATLREAGFTVATLALSHDAVSLDELAADPPER
                     LALVLGTEGDGLSHHTVAAADLTVTIPMAGGVDSLNVAAAGAVAAWALRPRA"
     gene            complement(1046..1819)
                     /locus_tag="VGN19_07815"
     CDS             complement(1046..1819)
                     /locus_tag="VGN19_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEV7195830.1"
                     /translation="MSLVRALLILLAGIAAGTINTVVGSGTLITFPVLLFLGYPPVVA
                     NVSNTIGLVAGGVTAVHGYRDELRGSARTLRRLAPASLAGGVLGAVLLLVLPPAAFQA
                     IVPVLIALGLVLVVVGPRVQRRSAQRHEAGIPPAAWHGAALTVGVLVAGIYGGYFGAA
                     QGVILMGLLSALSSEPIQRLNAYKNVLATIVNAVAALTFMAVAWGRINWLVAALVGVG
                     AFIGGLVGSRVGRRLPPWALRTVIIVVGLVGITKIVWFS"
BASE COUNT          316 a          658 c          669 g          247 t
ORIGIN      
        1 acggtgatcg ggatgatcga gggcgctgag ctggccgagc acgagaaccc tggagaggcc
       61 accgtgcacg tgttgcgcgg gcgcgtccgc ctcgtgtgcg gcgacgagtc ctgggaaggt
      121 cgctccggcg acctgctgaa ggttccggac gcgcggcaca gcctcatcgc cctcgaggcc
      181 tcagccgtcc tgttgaccgt cgccaagctg ggttgatcgc ggcagcatca cgctcgaggg
      241 cgcaaagccc acgccgccac tgcgccagcg gcggccacgt tgagcgagtc cactcccccg
      301 gccatcggga tcgtcacggt gaggtcggcg gcagccacgg tgtggtggga caggccgtca
      361 ccctccgtgc cgagcaccag cgccaggcgc tcgggcgggt cggcagccag ctcgtcgagg
      421 ctgacggcgt cgtgcgacag cgccagtgtg gcaacggtga agcctgcctc tcgcagggtc
      481 gcgatcccgc cgggccaggg gtcgatccgc gtccagggca cctggaacac cgtgcccatc
      541 gagacgcgaa tcgccctgcg gtacaaggga tcggcgcagc gcggggtgac caggattgca
      601 tccacgccga gcgctgcggc ggaccggaag accgctccca cgttggtgtg atcgacgatg
      661 tcctccagca cgagcacccg acgcgccgcc gctaccagtg actgcaccgt cggcaggacc
      721 ggccgctgca tcgaggccaa cgcgccccgg tgcaggtgga aacccgtgag cgcctcgatg
      781 gtgggatgct ccccgacgaa caccggtatg ccgtcccgct ccgcctgcgc gacgacgtcg
      841 gcgagctcgg tgagccaacg ttccgccatg agatagctgc gtggccggtg tccggcacgc
      901 aaggcacgtc ggatgacctt ctcggactcg gcgatgtaca ggccccgctc gggctccgtc
      961 cttcgccgca gggccacgtc cgtcagggag acatagtcgg cgacccgggg gtccgcgggg
     1021 tcggtgatct ggataggcat ggcgctcagc tgaaccagac gatcttggtg atgccgacga
     1081 gccctacgac gatgatcacc gtgcgcaggg cccagggggg caggcggcgt ccgaccctgg
     1141 agccaaccag tcccccgatg aatgccccga ccccgaccag cgcagcgacg agccagttga
     1201 tccgccccca ggccactgcc atgaaggtca acgccgccac ggcattgacg atggtggcca
     1261 gcacgttctt gtacgcgttg agccgctgga tgggctcgct cgacagggcg ctcagcagcc
     1321 ccatgaggat gactccctgg gccgcgccga agtacccgcc gtagatgccc gcgacgagca
     1381 ccccgacggt gagcgcggcc ccgtgccagg cggcgggtgg gatgcctgcc tcatggcgct
     1441 gcgcgctgcg acgttgcacg cgagggccca cgaccaccag caccagcccc agggcgatga
     1501 ggaccggaac gatggcttgg aaggccgccg ggggcagcac cagcaggagc actgcgccga
     1561 gcaccccacc ggcgagcgat gccggcgcca gtcggcgcag cgtgcgagcg gacccgcgca
     1621 gctcgtcgcg gtagccgtgc acagcggtga ccccgcccgc gaccagcccg atcgtgttgg
     1681 acacgttggc caccaccggg gggtacccga gaaacagcag cacgggaaag gtgatgagcg
     1741 tgcccgagcc gaccacggtg ttgatggtcc cagcggctat ccccgcgagc aggatcagca
     1801 gggctcggac cagggacact cggtcaccct atcgacgggg cggtcagccg atgatcaacg
     1861 gcacgtatgc cgcccgcttc ggtgagcggg
//
LOCUS       DASYFY010000392         2573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_238330, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000392 DASYFY010000000
VERSION     DASYFY010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238330"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..93
                     /locus_tag="VGN19_07820"
     CDS             <1..93
                     /locus_tag="VGN19_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HEV7195831.1"
                     /translation="LFLASDESSFITASQFLVDGGISGAYVTPL"
     gene            93..809
                     /locus_tag="VGN19_07825"
     CDS             93..809
                     /locus_tag="VGN19_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEV7195832.1"
                     /translation="MSSARPVIGITCYVEATSRGPWVDVPSAVLPVAYVAKIEQAGGV
                     ALIIPPRVDADEGLAAEVLERLDGLVIAGGADVDPQRYAAARHPEVQESRADRDATEL
                     ALATVAGRTGIPLLGICRGMQVMAVAGGGTLEQHVPDRVGHVDHSPEVAVYGEHVVET
                     VPGTQLAALLGPRTDVPSYHHQAVRTHPGFEPAAWAPDGTLEAMEDPSAVFRIGIQWH
                     PEVGDDPRLFEALVRAAAKA"
     gene            1087..>2573
                     /gene="cimA"
                     /locus_tag="VGN19_07830"
     CDS             1087..>2573
                     /gene="cimA"
                     /locus_tag="VGN19_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043714 - (R)-citramalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citramalate synthase"
                     /protein_id="HEV7195833.1"
                     /translation="MSDLHVYDTTLRDGAQQEGLNLSVSDKLAIALHLDELGVGFIEG
                     GWPGANPKDTEFFARAQSELRLQNATLAAFGATRRAGGKAADDLLVRALVDSGAPVVT
                     IVAKSHVRHVESALRTTLAENLEMVRDTVAFLAGEGRRVFLDAEHFFDGYAADRAYAL
                     EVIRAAVESGAEVVALCDTNGGMLPDQIGEVVADAVAATSARLGIHCHNDTGCAVANS
                     MAAVEAGATHVQGTINGYGERTGNADLLTVVSNLQIKRGIPLLETQRLREATRIAHAI
                     SEITNVPPYSRQPYVGASAFAHKAGLHASAIKIDPDLYQHTDPQHVGNDMRMLVSDMA
                     GRASIELKGRELGYDLSGDDATLSRLLKTVKDLELRGYTFDAADASFELLLRREVDGG
                     GLDFFEVESWRVMTDARDGDAALSEATVKLVAGGERVVATGEGNGPVNALDHALRKAL
                     APAYPELDKFELIDFRVRILDAAHGTDAVTRVLIETSDGQTSWET"
BASE COUNT          404 a          881 c          898 g          390 t
ORIGIN      
        1 ttgttcctgg ccagtgacga gtccagcttc atcaccgcct cgcagttcct ggtggacggc
       61 gggatctcgg gcgcctacgt caccccgctg tgatgtccag cgccaggccc gtcatcggga
      121 tcacctgcta tgtcgaggcc acgtctcggg ggccctgggt cgacgttccg agtgcggtgt
      181 tgccggtggc ctacgtcgcg aagatcgaac aggccggcgg cgtggcgctg atcatcccgc
      241 cgcgggtcga cgccgacgag ggcctggcag cggaggtcct cgagcggctc gacggtctgg
      301 tcatcgcggg tggggcggac gtcgacccgc agaggtatgc cgcagcgcgc caccccgagg
      361 tccaggagtc gcgcgccgac cgtgacgcca ccgagctcgc cctggccacg gtggcgggcc
      421 gcaccggcat accgctgctg ggcatctgtc gcgggatgca ggtgatggct gtggcgggcg
      481 gtggcacgct ggaacagcac gtcccggacc gggtgggcca cgtcgaccac tctcccgagg
      541 tggcggtcta cggcgaacac gtggtcgaga ccgtccccgg tacgcagctg gcggccctgc
      601 tggggcctcg gacggacgtc ccgtcgtacc accatcaggc ggttcgcacc catcccggtt
      661 tcgagcccgc agcctgggcg cccgacggca cgctggaggc gatggaggat cccagcgcgg
      721 tcttccggat cggcatccag tggcaccccg aggtggggga cgatccgcgg ctcttcgagg
      781 cgctggtgcg ggcggcagcc aaggcctgac cgacctaccc agcctctgcc caccatgcgg
      841 accgaggttt catcccctgg acactgcgtg ccacagtgaa cccgtgacgt cctggcacat
      901 ggctaccgcc atggtgatta tcaactagcg cgacgagacc tcctcgtcgc gcagacctcc
      961 cacacccggg gggtcttttc gtttgtctgg cgctgcggac cccaccccgg tcctgcagcg
     1021 ggcgcgacat cgaggggaca atgaccacca ggacgagaga tgcgacgacc cgatgaggat
     1081 tcgacgatga gcgacctgca tgtgtacgac accaccttgc gcgacggggc gcagcaggag
     1141 ggtttgaacc tctcggtgtc ggacaagctc gccattgccc tgcacctcga cgagctcggc
     1201 gtcggcttca tcgagggcgg ctggcccggt gccaacccca aggacaccga gttcttcgcg
     1261 cgcgcccaga gcgagctgcg gctccagaac gccacgctgg ccgcgttcgg ggcgaccagg
     1321 agggccggtg ggaaggcagc ggacgacctg ctggttcgtg cgctggtcga ctcgggggct
     1381 ccggtggtca ccatcgtggc gaagtcccat gtgcgccatg tcgagtccgc gctgaggacc
     1441 acgctcgcgg agaacctcga gatggtgcgg gacaccgtgg ccttcctggc cggcgagggt
     1501 cggcgcgtct tcctcgatgc cgagcacttc ttcgacgggt atgccgcgga ccgcgcctat
     1561 gcgctcgagg tgatccgggc ggcggtcgag tccggtgcgg aggtggtcgc gctctgcgac
     1621 accaacggcg gcatgttgcc cgaccagatc ggcgaggtcg tcgccgacgc ggtcgccgcc
     1681 acgtcggcgc gcctcggcat ccactgccac aacgacaccg gctgtgcggt cgccaactcg
     1741 atggctgccg tcgaggcggg ggcgacccac gtccagggca ccatcaacgg ctacggcgag
     1801 cgcaccggca acgccgacct gttgaccgtc gtcagcaacc tgcagatcaa gcggggcatc
     1861 ccgctgctgg agacccagcg cctgcgcgag gcgacccgga tcgcccacgc catcagcgag
     1921 atcaccaacg tgccgcccta ctcgcgccag ccctacgtgg gggcaagcgc cttcgcgcac
     1981 aaggccggtc tgcatgccag cgcgatcaag atcgacccgg acctctacca gcacaccgat
     2041 cctcagcacg tcggcaacga catgcgcatg ctggtctccg acatggctgg gcgggccagt
     2101 atcgagctca agggacgcga gctcggctat gacctcagcg gagacgacgc gacgctaagc
     2161 aggctgctca agaccgtcaa ggacctcgag ctgcgcggct acaccttcga cgcggcggat
     2221 gcgtcgttcg agctgctgtt gcgccgtgag gtggacggag gggggctcga cttcttcgag
     2281 gtggagtcct ggcgggtcat gactgacgcg cgcgacggcg acgctgccct gtcagaggcc
     2341 accgtcaagc tggtcgcggg cggcgagcgg gtggtggcca ccggcgaggg aaacggcccg
     2401 gtcaacgctc tcgaccacgc gttgcgcaag gcgttggcgc cggcctatcc cgagctcgac
     2461 aagttcgagc tcatcgactt ccgggtgcgc atcctcgacg ctgcgcacgg caccgacgcc
     2521 gtgacgcggg tgctgatcga gacctccgac gggcagacct cgtgggagac cat
//
LOCUS       DASYFY010000393         2122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1395155, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000393 DASYFY010000000
VERSION     DASYFY010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1395155"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            378..>2122
                     /locus_tag="VGN19_07835"
     CDS             378..>2122
                     /locus_tag="VGN19_07835"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEV7195834.1"
                     /translation="MVTAAAVLAVAAGAGLWWRHTAQGREADRAATAEITAFAQGWQR
                     RDFTAPDVRVEGTSGKAVNAAFKTATGGLGSGPVTVQADAVSRTGDSAKGTLHVTWTL
                     AGGAKWSYDAPVAARRSGGTWAISLPADASPWNPGVAAKDRLTATRTWGTRGDLLDGS
                     GQPLMPLGKVYPVQLDPARATAQVATALEKIVDDPAGSLVTKLAAAQKAGSSAPIPVI
                     TYRESDFQARRSQLDALKGVIYPVREQPLAPTRGFGQPLLGSYGPVSAEQIAKGNGRY
                     AVGDSAGVSGLQGQYDAILGGTPGVKVTSSGKPGTPLFEKAAVDGAAVKTTLDQRTQA
                     AAEKALKASGGTPSALVAVNVKTGDVLAAANSPALGFDRAITGRYQPGSAFKVATSYA
                     LLSGGKVTPTTPVTCPKTVVVDGRSFKNYEGEELGTPTFTDDFAHSCNTAFVQLAARL
                     GDSDLSTAATKIGLTGWAKSLGVANAFDASIPANNSKTDKAAAAIGQGRNEVSPLALA
                     VMAANVARGSAIAPALVTDPKPAGVDRTPAPLDASTITQLRGLMGAVVQRGTATVLNG
                     TPGGVVRGKTGTAEFG"
BASE COUNT          333 a          774 c          731 g          284 t
ORIGIN      
        1 cggatgcttg tgcttggggt cgacgtgccg gtcggaacgc cgtccagcag cccctgcctg
       61 cgcaaacgtg gcgtcggtcg aggcacctgt gtcctgctcg gggccttcct gctcgccctg
      121 cgcagagcca tgggtgggct cgctcaacgt gcacctctct ggtcgatcaa aagccgcccc
      181 gagggcggcc acggcgctct ggcgccgcat tgagtgtacg ggcggttcct gaggaaaccc
      241 tccacaccgt tcgtcacctc agacgccgaa ggctccgggg tggttggggt gccgcctggg
      301 cggcggacat atcgggcgcg agatttggca gcaacgtggg gtttgatgtg cccatgaacc
      361 ggagggcgac aattggcgtg gtcacagccg ccgcagtcct ggcagtggct gcgggcgctg
      421 gcctgtggtg gcggcatacg gcacagggcc gagaggccga ccgggcggcg acggccgaga
      481 tcacggcctt cgcgcagggc tggcagcgac gggacttcac ggctcccgac gttcgggtcg
      541 aggggaccag cggcaaggcc gtgaacgcag ccttcaagac cgcgacaggg ggcctggggt
      601 ccggccccgt cacggtgcag gccgacgcgg tcagccggac cggcgactcc gccaagggca
      661 ccctgcatgt cacctggacg ctcgcgggcg gggccaagtg gtcgtatgac gcccccgtcg
      721 ccgcacggcg cagcggcggt acctgggcca tctcgctccc ggcagacgcc tcaccctgga
      781 acccgggggt tgccgccaag gaccggctca cagcgacgcg gacctggggc acccgcggtg
      841 acctgctcga cggatccggc cagccactca tgccgctcgg caaggtgtac cccgtccagc
      901 tcgacccagc ccgtgccacg gcgcaggtcg ccacggcact ggaaaagatc gtcgacgacc
      961 cggcaggctc cttggtgacc aagctcgcag cggcccagaa ggccggcagc agcgcaccga
     1021 tccctgtcat cacctaccgc gagagcgact tccaggcccg ccgcagccag ctggacgccc
     1081 tcaagggcgt catctacccg gtgcgcgagc agccgctcgc gccgacgcgc gggttcgggc
     1141 agccgctgct gggttcgtac ggaccagtga gtgccgagca gatcgccaag ggcaacggtc
     1201 ggtatgccgt gggcgactcc gccggggtca gcgggctcca gggccagtac gacgccatcc
     1261 tcgggggaac cccgggggtc aaggtcacct cgagcggcaa gcccggcacg cccctcttcg
     1321 agaaggctgc ggtcgatggc gcggcggtca agaccaccct cgaccagagg acccaggctg
     1381 ctgccgagaa ggccctcaag gcctctggcg ggaccccgtc ggcgctggtc gcggtcaacg
     1441 tcaagaccgg ggacgtgctc gccgcggcga actcgccggc actcggcttc gaccgcgcca
     1501 tcacggggcg ttaccagccg ggctccgcct tcaaggtcgc cacgtcctac gccctgctgt
     1561 cagggggcaa ggtcaccccc accactcccg tcacctgccc caagaccgtc gtggtcgacg
     1621 gtcggtcgtt caagaactac gagggcgagg agctgggcac gcccaccttc accgacgact
     1681 tcgcgcactc gtgcaacaca gccttcgtcc agctcgccgc caggctcggt gacagcgacc
     1741 tctccactgc cgccacgaag atcggcctga ccgggtgggc caagtccctg ggcgtcgcca
     1801 acgccttcga cgccagcatc ccggccaaca acagcaagac cgacaaggcc gccgccgcca
     1861 tcggacaggg ccgcaacgag gtctctccgc tcgcgctggc cgtcatggcc gccaacgtcg
     1921 cgcgcggatc ggccatcgcc cccgccctgg tgacggaccc caagccggcg ggggtcgacc
     1981 gcactccggc cccgctcgat gcctcgacca tcacgcagct gcgtggtctc atgggcgcgg
     2041 tcgtccagcg cggcacggcg acggtcctca acggcacacc tggcggcgtg gtgcgaggca
     2101 agaccggcac ggccgagttc gg
//
LOCUS       DASYFY010000394         2356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1499704, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000394 DASYFY010000000
VERSION     DASYFY010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499704"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VGN19_07840"
     CDS             <1..326
                     /locus_tag="VGN19_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEV7195835.1"
                     /translation="GAYCAQYCRAVAGHHSMEDQAIFPHLRGADTRLSPVIDRLEQEH
                     HVIHGVLESVDAALVHLVEHPGDLSRLDEAVDQLSDTLLSHLSYEENQLVEPLARLGF
                     YAGQV"
     gene            478..843
                     /locus_tag="VGN19_07845"
     CDS             478..843
                     /locus_tag="VGN19_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195836.1"
                     /translation="MDMRLELVPLPTYDVERSKGFYVDRVGFHLDHDVEPGNGMRIVQ
                     LTPPGSACSIVVGVGIGDPDAPRVLNLHLVVDDVEEARGLLVDKNVEVSEVSDMGGVK
                     YAFFSDPDGNSWALQQLLR"
     gene            complement(1014..1445)
                     /locus_tag="VGN19_07850"
     CDS             complement(1014..1445)
                     /locus_tag="VGN19_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012397860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195837.1"
                     /translation="MIGQQADDYHLVEGPPPIADYLTLRERSGLSPRRLEQAAQGLSG
                     AWYAVHIRHRPSSTTVGMGRVLGDGGWYFHIIDMAVLPEHQRRGLGDRVLTALLRHIH
                     QFAPPGAYVSLMADEPGRRLYARHGFLDTAPRSLGMARTLT"
     gene            complement(1442..>2356)
                     /locus_tag="VGN19_07855"
     CDS             complement(1442..>2356)
                     /locus_tag="VGN19_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEV7195838.1"
                     /translation="MSHDHEHSDLAGGGHRRPLAAVLAISCTILVVEVIGAIASGSLA
                     LLADAGHMLTDVAGLTLALIAAILASRPPTPERTWGYRRAEVLAAAAQAAVLLAVGIF
                     VLVEGVRRLIDPPPVEAGVMFVFALVGLVGNAISMTILARTHGGNLNTRAAFLEVVND
                     MLGALAVLVAAILIAWFGWLRADAVTSILIGLLILPRTWKLLRETVDVLLEGTPRSID
                     LTDVRRHILSTSHVVAIHDVHASRVSSDLPVLTAHIVVDDSCFHDGHLPEILDELQSC
                     LADHFDVAHSTFQFEPVRHSAHEPATHA"
BASE COUNT          404 a          770 c          812 g          370 t
ORIGIN      
        1 tgggtgcgta ctgcgcgcag tactgccgcg cggtcgcggg ccatcactcg atggaggacc
       61 aggcgatctt cccccacctc aggggtgccg atacccgact gtctccggtg atcgaccgcc
      121 tggagcagga gcaccacgtc atccacgggg tgctggagag cgtggacgcc gcgctggtac
      181 atctggtgga acaccccgga gacctgtccc ggctcgacga ggcggtggac cagctcagcg
      241 acaccctgct ctcgcacctg tcgtacgaag agaaccagct ggtagaacca ctggcacgac
      301 tggggttcta cgctggccag gtctgaccta cctctccggg catacagatc gggaccggcg
      361 acgcttcggc agcccgtgcc tggttcgagt cggccggccg acctcgggct tcacgcatct
      421 tcgcggtagc tggcccagta ccctgacctt cccaagccgc tgagaggaga caccgacatg
      481 gacatgcgcc tggaactcgt accgctcccg acttatgacg tcgagcggag caagggcttc
      541 tacgtcgacc gggtgggctt ccatctagac cacgatgtcg agcctggcaa cgggatgcgg
      601 atcgtccagc tgacaccgcc cggatcagcg tgctccatcg tcgtgggtgt cggtatcggc
      661 gatccggacg cgccacgcgt tctcaacctc cacctcgtgg tggacgatgt cgaggaagcc
      721 cgtgggcttc tcgtggacaa gaacgtcgag gtctcagagg tgagcgacat gggaggcgtc
      781 aagtacgcgt tcttcagcga cccggatggg aactcctggg cactccagca actcctgcga
      841 tgaagccaga ccgcccttgt cggcggcccc gggcgctgtg tcggctagcg catccggacg
      901 aactggtgac gaagatcgct cgccccctgt gacccggagc tgatcgccgg agcatcacag
      961 cgacagccgt gccacctgtt ggtcgttcac ccccactggc cacctgatcg acgtcaggtc
     1021 agggttcggg ccatccccag cgatctcggt gcggtgtcga ggaagccgtg gcgggcgtac
     1081 agccggcgcc cgggctcgtc ggccatgaga ctgacgtacg cacccggggg tgcgaactgg
     1141 tggatgtggc gcagcagagc cgtcaggaca cggtccccga gcccgcgccg ttggtgctcg
     1201 ggcagcacgg ccatgtcgat gatgtggaag taccagccac cgtctccgag cacccgtccc
     1261 ataccgacag tcgtcgagct cggccgatgg cgtatatgca ccgcgtacca ggcgccggac
     1321 agcccttgcg ctgcctgctc gagtcgtcgt ggtgagagcc ccgagcgctc gcgcaacgtc
     1381 aggtagtcag cgatcggcgg tgggccttcg acgaggtgat agtcgtcggc ctgctggccg
     1441 atcacgcgtg ggtcgcgggt tcgtgggcgc tgtggcggac cggctcgaac tggaacgtgg
     1501 agtgcgcgac gtcgaagtgg tccgccaggc acgactgcag ctcgtcgagg atctcgggca
     1561 ggtgcccgtc gtggaagcac gagtcgtcga cgacgatgtg agcggtcagg accggcaggt
     1621 ccgaggacac ccgggacgcg tgcacgtcgt ggatggccac cacgtgcgac gtactgagga
     1681 tgtggcggcg tacatcggtc aggtcgatgc tgcgaggggt cccctccagc agcacatcga
     1741 cggtctcccg caacaacttc caggtccgcg gcaggatcag cagaccgatg aggatggacg
     1801 tgactgcgtc ggctcgcagc cacccgaacc acgcgatcag tatcgccgcg accagcacgg
     1861 caagagcgcc gagcatgtcg ttgacgacct ccaggaacgc cgctcgggtg ttgaggttcc
     1921 cgccgtgggt acgggccagg atcgtcatcg agatggcgtt gccgaccaga cccacgaggg
     1981 cgaacacgaa catcacgccg gcctcgaccg gcggcgggtc gatcagccga cggactccct
     2041 ccaccaggac gaagatgccc acggccagca gtacggctgc ctgcgccgcc gccgcgagga
     2101 cctccgcgcg ccggtatccc caggtacgtt ccggggtcgg gggccggctg gccaggatcg
     2161 cggcgatcag tgcgagggtg agtccggcca cgtccgtgag catgtgcccg gcgtcggcga
     2221 gcagcgcgag gctgccggag gcgatcgcac cgatgacctc gaccaccagg atggtgcagg
     2281 agatcgcgag tacggcggcc aaggggcgcc ggtgaccgcc gccagcgaga tcgctgtgct
     2341 catggtcgtg actcat
//
LOCUS       DASYFY010000395         1681 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_185346, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000395 DASYFY010000000
VERSION     DASYFY010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185346"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /locus_tag="VGN19_07860"
     CDS             complement(<1..432)
                     /locus_tag="VGN19_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEV7195839.1"
                     /translation="MSRNLSVAVDPRNSRSSATAPTRPTGGRGRSARLKNAGWVLFFL
                     LPSAIPLIAFTVVPMVGSVWVSLQKWNLISPATWVGLDNYRHLLTDPTTRTIFWHTLL
                     YVVGYLPLVYIGGLALAMALNRKLAGRSIFRAVYFLPVITSW"
     gene            complement(429..1643)
                     /locus_tag="VGN19_07865"
     CDS             complement(429..1643)
                     /locus_tag="VGN19_07865"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEV7195840.1"
                     /translation="MTVGNAANGRGSDLAAARILGLLGTRRPTSRAAIARQLGLSPAT
                     VTQITKDLLARGLVTELESVPSAGGRPATLLGLARSDAGAIGVKLTANHVAIVDVNLS
                     GVVTRSEAHPFDPQSPDALDQLRDLLLRAVDSHQGQLLGVGVGVPGSVDSQDNGVVTA
                     PMIGWDRVALGAVLREALHVPVLLDNDVHAVAAAQLLYGAGQQFDTYVVVTIGLGIGC
                     AVIVDRAVYRGAHGGAGEIGHIPVTLDGPACTCGSTGCLEAYIGDNGLLRSAREAGVV
                     GPRGTLASLRRAADRGDEGAQEVYRHAGGLLGRALAGVANTLDPQAIVLLGEGTAAWR
                     HWQAGFEASFRPHLMPDRRQIPLVTEDWTDDQWAQGAASLVMASPFDAQAAGGQGDLV
                     RARLQSLPGVAP"
BASE COUNT          268 a          573 c          602 g          238 t
ORIGIN      
        1 ccagctcgtg atcaccggga ggaagtagac cgcccggaag atcgagcggc cggccagctt
       61 ccggttgagg gccatcgcca gggccaggcc accgatgtag accagtggca ggtagccgac
      121 gacgtacagc agcgtgtgcc agaagatcgt gcgcgtcgtc gggtcggtca gcagatgacg
      181 gtagttgtcc agaccgaccc aggtggccgg cgagatgagg ttccacttct gcaggctcac
      241 ccacaccgac cccaccatcg ggacgaccgt gaacgcgata agcgggatcg cactgggcag
      301 aaggaagaac agcacccatc ctgcgttctt gagccgcgct gaccggccgc ggccgcccgt
      361 cggccgtgtc ggtgccgtgg cgctcgagcg gctgttccgc gggtccaccg cgacgctgag
      421 gttgcggctc atggcgccac ccccggtagt gactgcagcc gggcacggac cagatcgccc
      481 tggccgcccg cggcctgggc gtcgaacggc gaggccatca cgagcgatgc ggcgccctgc
      541 gcccactggt cgtcggtcca gtcctcggtc acgaggggga tctggcgccg atccggcatc
      601 agatgcggac ggaaggaggc ctcgaagccg gcctgccagt ggcgccaggc ggccgtgccc
      661 tcgccgagca gaactatcgc ttgcgggtcg agggtgttcg cgacgccggc gagcgcgcgc
      721 cccagcaggc cgcctgcgtg gcggtagacc tcttgcgccc cctcgtcacc gcggtcggca
      781 gcacgtcgca gcgaggcgag ggtgccgcgt ggaccgacga cgcctgcctc gcgcgcggac
      841 cggagcagcc cgttgtcgcc gatgtacgcc tccaggcagc ccgtcgaccc acaggtgcag
      901 gcaggcccgt cgagggtgac cgggatgtgg ccgatctcgc cggctcctcc gtgtgcgccg
      961 cggtataccg cccgatccac gatgacggca cacccgatgc cgagaccgat ggtgacgacg
     1021 acgtacgtgt cgaactgctg gcccgctccg tagagcagct gtgctgcggc cacggcatgg
     1081 acgtcgttgt cgagcagcac cggaacgtgc agggcctcgc gcagaaccgc accgagggcc
     1141 acacgatccc agccgatcat cggggcggtg accaccccgt tgtcctggct gtcgaccgac
     1201 cccggcacgc cgacgcccac accgaggagc tggccctggt ggctgtcgac tgcccgtaag
     1261 aggaggtcgc gaagctggtc gagcgcgtcc ggcgactgtg gatcgaaggg atgggcctcg
     1321 gagcgggtca ctacgccgga caggttcacg tcgacgatcg ccacgtggtt ggcggtgagc
     1381 ttcacgccga tcgcgccggc atcgctgcgc gccagcccga gcagggtggc cgggcggccg
     1441 ccggcggagg gaaccgactc gagctcggtg accaagcccc tggccagcag gtccttggtg
     1501 atctgggtga ccgtggctgg ggacagcccg agctggcgtg cgatcgcggc gcgcgaggtc
     1561 ggtctgcgcg taccgagcag gccgaggata cgggctgccg ctagatcgct cccgcgtccg
     1621 ttggccgcgt tcccgacggt catgaggact ccttagttca cgactaaatt tagtcacaaa
     1681 c
//
LOCUS       DASYFY010000396         6728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1026680, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000396 DASYFY010000000
VERSION     DASYFY010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6728
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026680"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VGN19_07870"
     CDS             complement(<1..460)
                     /locus_tag="VGN19_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEV7195841.1"
                     /translation="MSDNKLVAQQRTQFGKGAARKIRRDHKIPAVMYGHGAEPVHITL
                     PGHETMMALKVANVLLTIVVDGEEQLALAKDVQRDPIKPVIEHIDLVVVRKGEKVTVD
                     VPVHLEGEAAPETVVTLDAQTIELEVEATHIPENIVVSVEGLQAGTQIKAS"
     gene            complement(600..1574)
                     /locus_tag="VGN19_07875"
     CDS             complement(600..1574)
                     /locus_tag="VGN19_07875"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEV7195842.1"
                     /translation="MATRVKSLALWLALASAATFGSSGPFAKSLLVEGWSSGAIVLLR
                     VSGATLVLAVPTILALRGRWRVVRGSLPTILAYGAVAVAGCQVAYFYAVQRLDVGVAL
                     LLEYLGIVLVVLFVWVRTRRAPSALTGLGVLLALLGLGLVLDLAGHSRPDLVGVAWGL
                     VAATGLATFFVLAAEESSLPPVALAGLGMGTGAVALGLLGAVGVIPMTVGPGQVALMG
                     HQAPWWLAVAELAVVAAAAAYLLGVTAARMLGSTVASFVGLTEVLFAVLFAWLLLGEL
                     PGLMQLAGGVCIVAGVAAVRLGELRRAREQARAGQDEQTDFPLPAGVA"
     gene            1705..2271
                     /locus_tag="VGN19_07880"
     CDS             1705..2271
                     /locus_tag="VGN19_07880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CGNR zinc finger domain-containing protein"
                     /protein_id="HEV7195843.1"
                     /translation="MLFAHDTEMALRGAAALVNTAATLPSSDDDLTTVDQLDAFVAEW
                     GWTGSRAHDQAELHAVRALRPRLRMLWTADLDTAVTQVNQLLCEAGALPQLVRHGEWS
                     WHLHATPPEAPLATRMAVEAAMALVDVIRADELERLRVCAAADCEDVVVDLSKNRSKR
                     YCDGGCGNRRNVAAYRERLARTSPTPPQ"
     gene            complement(2359..3339)
                     /locus_tag="VGN19_07885"
     CDS             complement(2359..3339)
                     /locus_tag="VGN19_07885"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0044249 - cellular biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEV7195844.1"
                     /translation="MTGILKTTEKNLMVFAGRANPELAEEVASLLKTELVPTSAYDFA
                     NGEIYVRYEESVRGSDAFVIQSHTTPINDAIMEQLLMVDALKRASAKRITVVLPFYGY
                     ARQDKKHRGREPISARLMADLFKTAGANRLMAVDLHTSQIQGFFDGPVDHLMALPILS
                     GYVREKYGHERLAVVSPDAGRIKVAEQWSERLGGAPLAFIHKTRDINRPNETVANRVV
                     GEVQGRICVLVDDMIDTGGTITKAADALMAEGAAGVVIAATHAILSGPAIDRLKACTA
                     SEVIVTNTLPIDEAHEFDKLTVLSIAPLISRAIQEVFEDGSVTSLFDGHA"
     gene            complement(3336..4925)
                     /gene="glmU"
                     /locus_tag="VGN19_07890"
     CDS             complement(3336..4925)
                     /gene="glmU"
                     /locus_tag="VGN19_07890"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015772211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEV7195845.1"
                     /translation="MTPSPSHCHPPVGASRVNSPLGSPRLAAVIVLAAGEGTRMKSAT
                     PKVLHRIGGRTLLGHAIAAARAVCPEHLAVVVRHERDLVAAHVAEVDPAAVIADQDEV
                     KGTGRATECALDALPGDLDGIVLVTYGDVPLLDGATLHALVEEHAASGSAVTVITAHL
                     QDPAGYGRILRGPAGDVQGIVEHKDATPQQRTITEINSGIYAFDAQLLREALAKVGTD
                     NVQGEKYLTDVLAIARSAGGRVSAHLVDDLWQTEGVNDRVQLARLGKELNRRITERWM
                     REGVTIVDPDTTWVDADVKIGRDAMILPGTQLLGATTIGERALIGPDTTLTDTEVGEA
                     AEVKRTEALLAVIGPGATVGPFSYLRPGTELGARGKIGGFVETKNARIGEGAKVPHLT
                     YAGDATIGDGANIGAGTIFANYDGVAKHHTNVGKHSFVGSNSVLVAPVTIADGAYVGA
                     GSAVTAEVEPGQIAVARGRQRNIDGWVARARAGTKTAQAAQAAQAERAAQTEQAGQAA
                     AGDARPATRHTEASTEGQGNA"
     gene            5190..6320
                     /locus_tag="VGN19_07895"
     CDS             5190..6320
                     /locus_tag="VGN19_07895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195846.1"
                     /translation="MVLAAAFAAGGLIFPQAGWAVGSVPTALSMPAHVAPTASLVAGS
                     ATPVAVTARSGGVALPGATVYLKFQPTTDGGTASVGTVPLTAAPQAFIADSSGRVTVS
                     YRTPAVRPGGGHDLITASNAASGATAQATSTYYFTPTAHWQWLPEPIAAPGSLGASHN
                     TPVTVTALDAANSPVPGAQVCLIITRATSGGTATVGTVALTTRFQCFSANGSGVVTIN
                     YATPAALPTTGTDILTVRDTTSTLYNTTSWHGYSFGSLNSVTFSPTPIAATGRLAPGA
                     KVVLTLTPRDATGAKISGATFSLALRSAAGARATVSNYAAAPGGSTLSATPLTFVSHT
                     STAMQITYRVSTTPPTSGVDYLDATVVLPSGATQTTTVQYTY"
     gene            6434..>6728
                     /locus_tag="VGN19_07900"
     CDS             6434..>6728
                     /locus_tag="VGN19_07900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195847.1"
                     /translation="MDFDSIESRIGGVGGRAATPPRAGRLLFDFVRGSGATAILELGF
                     AHGNSTCYLAGALDERGTGSILTIDRETARARDPDIHTLLHWTGLQRYVTPVFA"
BASE COUNT         1031 a         2401 c         2258 g         1038 t
ORIGIN      
        1 cggacgcctt gatctgcgtg ccggcctgca ggccctcgac ggagaccacg atgttctcgg
       61 ggatgtgggt cgcctcgacc tcgagctcga tggtctgcgc gtccagcgtg acgacggtct
      121 cgggagcggc ctcgccctcg aggtggaccg ggacgtcgac cgtgaccttc tcgcccttgc
      181 ggacgaccac gaggtcgatg tgctcgatga ccggcttgat cgggtcgcgc tgcacgtcct
      241 tggccagggc cagctgctct tcgccgtcca cgacgatggt cagcaggacg ttggcgacct
      301 tgagtgccat catcgtctcg tgacccggca gggtgatgtg cacgggctcg gcaccgtggc
      361 cgtacatcac cgcggggatc ttgtggtcgc gacggatctt gcgggcggcg cccttgccga
      421 actgcgtgcg ctgctgcgcg acgagcttgt tgtcagacac gaaaactcct gtggatctaa
      481 gggttcgagg atgcggtggg cctcgacgtg gggcgcagca cggagggctc caccgcgtcg
      541 atcacggacg gtgccggcca aagccatgcg gtgtccctcg ccgaggcaac ccgcagagtc
      601 taggcgacgc cggcgggcag agggaaatcc gtctgctcgt cctgccccgc gcgggcctgc
      661 tcgcgcgccc tgcggagctc accgagtcgc accgcggcaa cccccgccac gatgcacacc
      721 ccaccggcga gctgcatcag tcccggcagc tcgccgagta ggagccaggc gaacagcacg
      781 gcgaagagga cctcggtgag accgacgaac gacgccaccg tcgatccgag catccgggcc
      841 gcggtgaccc caagcagata ggcggcagca gccgcgacca ccgcgagctc cgccaccgcg
      901 agccaccagg gtgcctggtg acccatcagc gcgacctgtc ccgggccaac cgtcatcggg
      961 atgacgccga cggcgccgag cagcccgagg gcgacggcgc cggtgcccat ccccaggccc
     1021 gccagtgcca ccggcggcag gctgctctct tcggcggcga gcacgaagaa cgtcgccagc
     1081 ccggtcgcgg ccaccagccc ccaggccacc ccgaccagat ccggccggct gtgacccgcc
     1141 aggtcgagca ccagcccaag ccccagcagg gcaagcagca cgcccaggcc cgtcagcgcg
     1201 ctgggcgcgc gcctcgtgcg cacccagacg aacaacacga ccagcacgat cccgaggtac
     1261 tccaacagga gggcgacacc gacgtcgagg cgttgcacgg cgtagaagta cgcgacctga
     1321 cacccggcga ccgccacggc cccgtacgcg aggatcgttg ggagggagcc gcggaccacc
     1381 cgccagcggc ctcgcagggc gaggatcgtg ggaacggcca ggacgagagt ggctccgctg
     1441 acgcgcaaca gcacgatcgc gccagagctc cacccctcga ccaacagcga cttggcgaac
     1501 gggccactgc tgccgaaagt cgccgcggac gccagggcca gccacagtgc gaggctcttg
     1561 acgcgtgttg ccatggcggt cacctgactt tgtgcggctt cgcggatgca tgggttgcga
     1621 ggatcccgca cgaatcgaac atcgtgtcag gatcaaaacg acttatactg atgacgctag
     1681 cgacccgccc cgtcaggagt caagatgctt tttgcccatg acaccgagat ggccttgcgc
     1741 ggggccgctg cactggtcaa cacggccgcg actctcccgt cgagcgacga cgacctgacc
     1801 acggtggacc agctcgacgc ctttgtcgct gagtgggggt ggaccggctc acgggcgcac
     1861 gaccaggccg agctccacgc cgtgcgagcg ttgcgcccca ggttgcggat gctgtggacg
     1921 gcggacctcg ataccgctgt cacccaggtc aaccagctgc tgtgcgaggc cggggcgctg
     1981 ccgcagctcg tgcgccatgg cgaatggtcg tggcacctgc atgccacccc gccggaggct
     2041 ccgctggcca cgcggatggc ggtcgaggct gccatggcgc tggtggacgt catcagggcc
     2101 gacgagctgg aacgcttgcg ggtctgcgcc gccgccgact gcgaggacgt cgtggtcgac
     2161 ctgtcgaaga accggtccaa gcgctactgc gacgggggct gcggcaaccg ccgcaacgtc
     2221 gcggcatacc gggagcgctt ggcccgcacc tcccccacgc ccccgcagta acttctgtta
     2281 gcagaggttc gtgcaggccg catagggtgc aacttcccct agtggggcta acctctgctg
     2341 cggcgtgact gggcgcggtc aggcgtggcc gtcgaacagg ctcgtcacgg agccgtcctc
     2401 gaagacctct tggatcgcgc gactgatcag cggcgcgatc gacaggaccg tcagcttgtc
     2461 gaactcgtgg gcctcgtcga tcggcagcgt gttggtcacg atgacctccg acgcggtgca
     2521 ggccttgagc cgatcgatcg ccgggccgga caggatggcg tgcgtcgccg cgatgaccac
     2581 cccggcagca ccctcggcca tcagcgcgtc ggcggccttg gtgatggtgc ccccggtgtc
     2641 gatcatgtcg tcgaccaaga cgcagatccg gccctgcacc tcgccgacca cgcggttcgc
     2701 gacggtctcg ttggggcggt tgatgtcgcg ggtcttgtgg atgaacgcca gcggcgcgcc
     2761 accgagacgc tcggaccact gctcggcgac cttgatgcgc ccggcatccg gggagacgac
     2821 cgcaagccgc tcgtgaccgt acttctcgcg gacgtagccc gacaggatcg gcagcgccat
     2881 caggtggtcc accggcccgt cgaagaaccc ttggatctgc gaggtgtgca gatccactgc
     2941 catcagccgg ttggccccgg ccgtcttgaa caggtcggcc atgagacgag ccgagatcgg
     3001 ctcccgaccg cggtgcttct tgtcctggcg cgcgtagcca tagaacggca gcaccacggt
     3061 gatgcgcttg gcgctggcgc gcttgagcgc gtcgaccatc agcagctgtt ccatgatcgc
     3121 gtcgttgatg ggcgtcgtgt ggctctggat gacgaaggcg tccgaccccc gcaccgactc
     3181 ctcgtaacgc acgtagatct caccgttggc gaagtcgtag gcactcgtcg gcacgagctc
     3241 ggtcttgagc aggctggcga cctcctcggc cagctcgggg ttggcccgtc cggcgaagac
     3301 catgaggttc ttctcggtcg tcttcaggat gccggtcacg cgttgccctg cccttcggtg
     3361 gatgcctcgg tatgccgcgt cgccggccgt gcgtcgccgg cggccgcctg cccggcctgt
     3421 tcggtctgtg cggcccgctc agcctgcgct gcctgtgctg cctgggcggt cttggtgccg
     3481 gcgcgggccc tggcgaccca cccgtcgatg ttgcgctgcc gacctcttgc caccgcgatc
     3541 tggccgggct cgacctcggc ggtcaccgcg gatcccgcac ccacgtacgc accgtcggca
     3601 atcgtgaccg gcgccaccag gaccgagttc gaccccacga agctgtgctt gcccacgttg
     3661 gtgtgatgtt tggccactcc gtcgtagttc gcgaagatcg tgcccgcgcc gatgttggcg
     3721 ccgtcgccga tcgtggcgtc gccggcatag gtcaggtggg gcaccttggc gccctcgccg
     3781 atgcgcgcgt tcttggtctc cacgaacccg ccgatcttgc cgcgcgcgcc cagctcggtg
     3841 ccgggacgca ggtacgagaa cggcccgacc gtcgcgccgg ggccgatgac cgccagcagg
     3901 gcctctgtgc gcttgacctc ggccgcctcg ccgacctcgg tgtccgtgag cgtcgtgtca
     3961 ggaccgatga gggcgcgctc accgatggtc gtggcgccga gcagctgggt gccgggcaag
     4021 atcatggcgt cgcgcccgat cttgacgtcg gcatcgaccc acgtggtgtc agggtcgacg
     4081 atggtcacgc cctcgcgcat ccagcgctcg gtgatccgac ggttcagctc cttgcccagt
     4141 cgcgcgagct gaacccggtc gttgactccc tcggtctgcc acaggtcgtc gacgaggtgc
     4201 gcgctgaccc ggccaccggc tgagcgcgcg atggccagga catcggtgag gtacttctcc
     4261 ccctgcacgt tgtcggtgcc gaccttggcc aaggcctcac ggagcagctg cgcgtcgaac
     4321 gcgtagatcc ccgagttgat ctcggtgatc gtgcgctgct gcggggtcgc atccttgtgc
     4381 tcgacgatcc cctggacgtc gcccgcgggc ccgcgcagaa tccggccgta accggccggg
     4441 tcctgcagat gggcggtgat caccgtgacg gcgctgccgc tcgcggcatg ctcttcaacg
     4501 agggcatgca gcgtcgcgcc atcgagcagc ggcacgtcac cataggtcac cagcacgatg
     4561 ccgtcgaggt cgccaggcag ggcgtccaac gcgcactccg tggctcgacc ggtgcccttg
     4621 acctcgtcct ggtcggcgat caccgctgcc gggtcgacct cggcaacatg cgccgccacc
     4681 agatcccgct cgtggcggac cacgaccgca agatgttcgg ggcagacggc ccgtgcggcg
     4741 gcgatcgcat ggcccaacag ggtccgacca ccgatccggt gcagaacctt gggcgtcgcg
     4801 gacttcatcc gggtgccctc gccggcggcg aggacgatga cggcggcaag gcgaggcgag
     4861 ccgaggggag agttcacgcg cgaggctcca acgggtgggt ggcagtgcga cggggacggc
     4921 gtcatgttac ccggaggtgg agccgggtcg gccggcccgg ctcggacccc gtggcgcggg
     4981 cccggcgaac gtggcggcgc aagctccctg gacccggtgg cgcaggcccc acgtacgaca
     5041 cctacctcgt tcttttgcct gaggtcatcc cctttgccta ctcctagcct caagggcact
     5101 cgacccaagg agcgactgtg cgcacgaact ctcttcggtg gccgacgggg ggctggtttc
     5161 gttctcgtca ccacgccaga cggggatcca tggtcctcgc cgcggccttc gccgctggtg
     5221 gactgatctt cccgcaggcc ggctgggcag tcggctcggt ccccacagcg ctgtccatgc
     5281 ccgcgcacgt cgctcccacc gcaagcctgg tcgcgggaag cgcgacgccc gtcgcggtga
     5341 ccgcccgcag cgggggcgtc gcgcttccag gggcgaccgt ctacctgaag ttccagccga
     5401 ccaccgacgg ggggacagcc tcagtcggca ccgtgcctct gacggcagca ccgcaggcgt
     5461 tcatcgccga ttccagcggt cgggtgacgg tcagctaccg aactccggcg gttcgaccgg
     5521 gtgggggcca cgacctcatc accgcttcga acgcggcgtc gggcgcgacc gcgcaagcca
     5581 cgagcaccta ctacttcacc cctaccgccc actggcagtg gctgccggaa ccgatcgccg
     5641 cgcctggctc actcggagcc agccacaaca cccctgtgac cgtgactgcg ctcgacgctg
     5701 cgaactctcc ggtccccggc gctcaggtct gcctcatcat cacccgcgcc acgagcggtg
     5761 gaacggcgac cgtcgggacg gtggcgctga cgacccgctt ccagtgcttc agcgcgaacg
     5821 gtagtggcgt cgtcacgatc aactacgcga ctcccgcggc gctaccgacg acagggacgg
     5881 acatcctcac ggtccgtgac acgaccagca ccctgtacaa cacgacctcg tggcacgggt
     5941 actcattcgg ttccctgaac tcggtcacct tcagcccgac gcccattgcc gcgactggca
     6001 ggctggcccc cggcgcgaag gtcgtcctga cgctcacccc acgggacgcc actggcgcca
     6061 agatctccgg cgcgacgttc agcctggctc tgcgaagcgc ggccggagct cgcgcgacgg
     6121 tgtcgaacta cgctgccgcc ccgggaggga gcacgctctc cgccactccc ctgacgttcg
     6181 tgagccacac cagcacggcc atgcagatca cctaccgagt ctcgacgacc ccacccacct
     6241 ccggagtgga ctacctcgac gcgaccgtgg tccttccctc tggtgccaca cagacgacca
     6301 cggtgcagta cacctactag gactcggacg tgaccgctgg aagggccagg tcggtcgacg
     6361 ccgggtggtc cgacgccggc tcggccgggc cgcccccgat cggccggctg ggtgagccgg
     6421 cccgaaggta gccatggact tcgacagcat cgagtcgcgg atcgggggcg tcggggggcg
     6481 ggcagccacc ccaccccggg ccggtcgact gctcttcgac ttcgtgcgcg gcagcggcgc
     6541 cacggcgatc cttgagctgg gcttcgcgca cggcaactcc acctgctatc tagcaggcgc
     6601 gctcgatgag cgcggaacgg gatcgatcct cacgatcgac cgggagaccg ctcgggcgag
     6661 ggacccagac atccataccc tgttgcactg gacgggcctt cagcgctacg tcacccctgt
     6721 cttcgcac
//
LOCUS       DASYFY010000397         2869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_606646, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000397 DASYFY010000000
VERSION     DASYFY010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606646"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VGN19_07905"
     CDS             complement(<1..296)
                     /locus_tag="VGN19_07905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007923820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEV7195848.1"
                     /translation="MALTIGIVGLPNVGKSTMFNALTKNNVLAANYPFATIEPNVGVV
                     PLPDARLSALAEIFGSERILPATVSFVDIAGIVRGASVGEGLGNKFLANIREADA"
     gene            complement(309..1160)
                     /locus_tag="VGN19_07910"
     CDS             complement(309..1160)
                     /locus_tag="VGN19_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEV7195849.1"
                     /translation="MSSEFDTGSAVVAREGEQGVYDAALGEGWRIGGGINGGLLLAIA
                     GRALSQEFGAPNGERPGHPDPLAISAYYLTPGVPGPATLLTSVVRRGRAVSTGQASLF
                     QDEGGLPVERIRVLATYGDLAAVDGDATTTATPPQLPPPEECVSAAQSPPGFLKHASL
                     LQRLDLRLDPATTGWAVGKPSGNGVIRGWLRMADTHEPDPLMLLLAVDALPPVAFELG
                     LPGWTPTLELTAHVRARPAPGWLRVVLTNRTLTGGFMEEDAEVWDSEGRLVALSRQLA
                     RASAPRR"
     gene            complement(1218..2087)
                     /locus_tag="VGN19_07915"
     CDS             complement(1218..2087)
                     /locus_tag="VGN19_07915"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEV7195850.1"
                     /translation="MVLNDGDLVLTASDDDPGAFSVRWQGETVGRVELLADGTGDGDL
                     LWVVLPEYRSVGVVERALRLAMGWGFDTLGLDRIEARVPTADLDGVRAALRAGLRKEG
                     VARGALGPGARRLDTIVLARLRDDEQPDSRTGFIAMLDSSLPTKRAIAQGVLRDGDGR
                     VLLCELTYKTEWDLPGGVVDPAESPATCLTREIREELGLDLEVRGLLAVNWLPPWRGW
                     TDATVFVFDLGFAPDDLLARITLERREIRGIHFAGEEEWESHVAPYNRRLLAFLSTHA
                     GSTAYLEDSLPAL"
     gene            2240..>2869
                     /locus_tag="VGN19_07920"
     CDS             2240..>2869
                     /locus_tag="VGN19_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEV7195851.1"
                     /translation="MELVLILLLGVILGATVGAWMTRASAAVALAAATVEATLLRERV
                     VDLEAAVADDAQTAAALAPLRDTLGRVEHQVGILERDRTSQFAALETTIASVRASTAE
                     LGRQTQSLAGSLNSSTVRGAWGEVQLRRVLEHAGLLARCDFDEQVSRVSRHDRQVRPD
                     VVVRLPGDKYLVVDSKAPMASFLAAQGEDLPPAERSRLLRDHAAALKGHV"
BASE COUNT          451 a         1003 c         1004 g          411 t
ORIGIN      
        1 gcgtcggcct cgcggatgtt ggcgaggaac ttgttgccga gcccctctcc caccgatgcg
       61 ccacgaacga tgcccgcgat gtcgacgaac gacacggtcg cgggcaggat ccgttcggag
      121 ccgaagatct cggccaacgc gctcagacgc gcatcgggca gcggcaccac cccgacgttc
      181 ggctcgatgg tggcgaacgg atagttcgcc gccagcacgt tgttcttggt cagggcgttg
      241 aacatcgtgg acttgcctac gttgggcagt ccgacgattc cgatagtgag agccacaagg
      301 ccgagagtct accgtcgcgg cgcggaagcc ctggccagct gacgggacag cgcgaccaga
      361 cgtccctcgc tgtcccacac ctcggcgtct tcctccatga agccgccggt cagcgtgcgg
      421 ttggtgagga cgacacgcaa ccagccaggt gcggggcggg cccggacgtg cgcggtcagc
      481 tcgagggtgg gagtccagcc cggcaaaccg agctcgaagg cgaccggcgg gagcgcatcg
      541 acggcgagca gcaacatcag ggggtcgggt tcatgggtgt ccgccatgcg tagccagcca
      601 cggatcacgc cgttcccgga gggcttcccc accgcccacc ccgtcgtggc gggatcgagg
      661 cgcaggtcga ggcgctgcaa cagcgaagcg tgtttgagga agcctggagg cgattgggcc
      721 gccgagacgc attcctccgg cgggggtagc tgcggcgggg tcgccgtggt ggtggcgtcg
      781 ccgtccaccg ccgccaggtc gccataggtg gcgagcaccc ggatgcgctc caccggcagc
      841 ccgccctcgt cctggaacag cgacgcctgc cccgtcgaca ccgctcgccc tcgccgcacc
      901 acggaggtga gcagggtggc ggggccgggg acgccaggcg tcaggtagta cgcgctgatc
      961 gccagcgggt cagggtgacc tggccgttca ccgttcgggg cgccgaactc ctgcgacagg
     1021 gcccgaccag cgatggccag cagtaggccg ccgttgatgc cgccaccgat gcgccaccct
     1081 tcgcccagag ccgcgtcata gacgccctgc tcaccctcgc gcgccactac tgccgaaccc
     1141 gtgtcgaact cgctgctcac ccggccagtc tggcccactg tggcaggggg cacgagatgg
     1201 acgtggccag cctcacctca cagcgccggg agactgtcct cgaggtatgc cgtggagccg
     1261 gcgtgagtgg agaggaaggc cagcagccgc cggttgtagg gcgcaacgtg gctctcccac
     1321 tcctcctcgc ccgcgaagtg gattccgcga atctctcgac gctccagggt gattcgcgcc
     1381 aggaggtcgt ccggggcgaa cccgaggtcg aagacgaaga cggtggcgtc ggtccagccg
     1441 cgccacggcg ggagccagtt cacggcgagc aggcctcgca cctccaggtc gaggccgagc
     1501 tcctcgcgaa tctccctcgt cagacaggtg gccggagact cagccggatc gacgaccccg
     1561 cccggcagat cccattccgt cttgtaggtg agctcacaga gcagcacccg cccatcaccg
     1621 tcacggagca cgccctgcgc gatggcgcgt ttggtgggca gcgacgagtc gagcatcgcg
     1681 atgaacccgg tccgggagtc gggctgctcg tcatcccgca ggcgtgccag cacgatcgtg
     1741 tcgaggcgtc gcgcgcccgg cccgagggcg ccccgggcca ccccctcctt gcgcagtccg
     1801 gcgcgcaagg ctgcgcggac accgtccagg tcggcggtcg ggacccgagc ctcgatgcgg
     1861 tcgaggccga gcgtgtcgaa gccccagccc atggccaggc gaagggcgcg ctcaacgacg
     1921 ccgacggagc ggtactcagg aaggaccacc cacaggagat ccccatcccc cgtaccgtca
     1981 gcgagaagct ccacgcgacc cacggtttcg ccctgccagc gcacgctgaa cgcgccgggg
     2041 tcgtcgtcgc tggccgtcaa caccaggtca ccgtcgttca ggaccattgg accagcctca
     2101 gccacgagca cgctcccccg ccatggtcgg tgaccaggcc tcgtgggcgc gaacgcgcgc
     2161 gtggtagtcg gcagctgatt cgggcatgtc ccgacggtat cggtgcgcgg tgtcggtggc
     2221 tgatggcatg gtcaacggca tggaactcgt gttgattctc ctcctgggcg tcatcctcgg
     2281 tgccaccgtg ggcgcctgga tgacccgcgc gtctgcggct gtcgcgctgg cagcggccac
     2341 cgttgaggcc accctgctcc gagagcgggt ggtcgacctg gaggcagccg tggccgatga
     2401 cgcacagacc gcggcggcac tggcgcctct acgcgacacg cttggacgcg tcgagcacca
     2461 ggtggggatc ctcgagcgag accgcaccag ccagttcgcc gccctcgaga cgacgatcgc
     2521 ttcggtacgc gccagcactg cggagcttgg gcgccagacc cagtccctgg ccggctcgct
     2581 caactcctcg acggtccggg gcgcctgggg tgaggtgcag ctgcgcaggg tgctcgagca
     2641 tgcgggcttg ctggcgcgct gtgacttcga cgagcaggtg agccgagtca gccggcacga
     2701 tcgccaggtg cgtccggacg tcgtggttcg actgcccggc gacaagtacc tcgtggttga
     2761 ctcgaaggcg ccgatggcgt cgttcctcgc ggcccaaggc gaggacctgc ccccggccga
     2821 gcgcagccgg ctcctgcgcg accacgccgc agcgctcaag gggcacgtg
//
LOCUS       DASYFY010000398         7052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_133152, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000398 DASYFY010000000
VERSION     DASYFY010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7052
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133152"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1198)
                     /locus_tag="VGN19_07925"
     CDS             complement(<1..1198)
                     /locus_tag="VGN19_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008832 - dGTPase activity [Evidence IEA];
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA];
                     GO_process: GO:0006203 - dGTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEV7195852.1"
                     /translation="MTYGDADRQRWVHEDPVLKRADRDDFARDRARLVHSASLRRLSA
                     KTQVVQPGDDDFVRNRLTHSLEVAQIGREFGAALGCNADVVDTACLAHDLGHPPFGHN
                     GEQALDAVAADIGGFEGNAQTLRLLTRLEPKRIHPDGRPAGLNLTRASLDAATKYPWT
                     QAETPTPTAKFGVYDDDLPVFEWYRMGRPPGQRCIEADVMDWSDDVAYSVHDVEDAIA
                     SGRLDLRRLRDPFDVDSVLAVATGLYAADLSTDALGAALERVLATGTVPAAYDGSRAD
                     RAALKDMTSRLIGRFVVAVEEATRARHGDGPLTRYAADLVVPDETRAECAVLKAVAAH
                     FVMHAQERVDVLTEQRAVVRDLVTAYHEDPIHRLDPDLLGDWKAADSDGAALRVVVDQ
                     VASLTDI"
     gene            complement(1195..1878)
                     /locus_tag="VGN19_07930"
     CDS             complement(1195..1878)
                     /locus_tag="VGN19_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018172657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEV7195853.1"
                     /translation="MIGTPGGTPERPATFFDGPEEFEAWLQANHDTATELWMGLYKKH
                     VGERGLTWEQAVIEALCWGWIDSVVQRLDEDSVRQRWTPRKPSSTWSSINIAAVERLA
                     AQGRMKPPGLAAYARRRPERSGIYAYEQGELEFSAPFAERLVADPAATAFWAETTASY
                     RKVAVNWVMTAKQEATRDKRMTQLLEDSSAGRLIPSQRYGQQPKWVERAAAAARAASE
                     ADGGPRVER"
     gene            complement(1887..3095)
                     /gene="dusB"
                     /locus_tag="VGN19_07935"
     CDS             complement(1887..3095)
                     /gene="dusB"
                     /locus_tag="VGN19_07935"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEV7195854.1"
                     /translation="MTTATTTSAPVLPPLQIGPHTIESPVVLAPMAGITNRAFRRLCR
                     EYGDQGLEAGGASGATSLYVSEMITSRALVERTPETMRLIEHDPQESPRSIQLYGVDP
                     DTVAAAVRLLVAEDRADHIDLNFGCPVPKVTRKGGGAALPWKRDLFEAIVTAAVREAS
                     AYAVPVTIKMRKGIDDDHLTYLEAGLIAERAGVAAVALHGRTASQAYSGEADWSAIAR
                     LKETVRTIPVLGNGDIWSAEDAVRMTLETGCDGVVVGRGCLGRPWLFTDLAAAFAGTA
                     ARVQPTLGDVLATMRRHTEYLVDFYDDEYKACRDIRKHIAWYLKGFPAGSTVRHHLAL
                     VDSLDSLDRLAASMDARAPWPGDAAEGQRGRAGSPRRVALPDGWLDSRSLDDTAREAV
                     AGAELSVSGG"
     gene            3134..3970
                     /locus_tag="VGN19_07940"
     CDS             3134..3970
                     /locus_tag="VGN19_07940"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEV7195855.1"
                     /translation="MSALMAAEALLQRGLGGMVVVDVQWNLTTASGPPGRDLYTAAHL
                     PGAHFVDLDAELSGPPGPGGRHPLPTAHAVQEALRRCGARAGAPILVYDQGGSYAAAR
                     AWWVFRYFGATEVRVLDGGVPAWREAGGPTTAEVPEAGAGDFETHPGGLPLLDAEAAA
                     PLARHGILLDVRAPERFRGEVEPIDPVAGHIPAAVSSPVTDTLAPDGRMRDPDDLRAR
                     FATLGVAADRPVGAYCGSGVTAAQEVLALHEAGIPAALYVGSWSHWITDPRRPIATGD
                     GT"
     gene            complement(3967..4575)
                     /locus_tag="VGN19_07945"
     CDS             complement(3967..4575)
                     /locus_tag="VGN19_07945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195856.1"
                     /translation="MTIRLLLADDQALVRGALATLLGLEPDMEVVSEVGRGDEVVAAA
                     QQTRPDVALIDVEMPGLDGIAATAALREAVPATRVLIVTTFGRPGFLRRALQAGAGGF
                     VVKDTPARQLAEAVRRVHAGLRVVDPALAADSLAGGESPLTARETQVLVAARAGGSVA
                     DIARQVSLSEGTVRNHLSSAIGKTMARNRADAVRIADEFGWL"
     gene            complement(4572..5801)
                     /locus_tag="VGN19_07950"
     CDS             complement(4572..5801)
                     /locus_tag="VGN19_07950"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEV7195857.1"
                     /translation="MAIPQGHRSGLSLPSEGLPVWSDERGWRGWRGWMLGFFMAGIWL
                     VFLSDAFRQAWHLHRTLGRLGGLAVLGLFVVLYLGHFAVMRATVWGSRSSTGPGWLLS
                     RLGLVSWAGLVVLAGLAVLTIGQEGASTWVFLAVAGLWTFRLRIGLAVGVLLVVLYEL
                     LTLHVAGWQPNGSVSTSILLAMAAVTGGMLASQRQRALGEAREENARLAIQEERHRMA
                     RDVHDILGHSLTVITVKAELASRLMDVSPERARAEVADVERLARDALADVRQAVAGFR
                     EISLPAELARSRATLAAAGVEADLPTATDAVGSPLREVCAWTLREGVTNVVRHSGAST
                     CRVVLRTDGITITDNGSGQRPGSPGSGLVGLRERATAVGARLETRAVDPHGFELSLTA
                     LGAPLGTDDSVDVRAQA"
     gene            complement(5768..6565)
                     /locus_tag="VGN19_07955"
     CDS             complement(5768..6565)
                     /locus_tag="VGN19_07955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012246283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195858.1"
                     /translation="MTVSTAPSPGLPQRSVPSMGGFNATLLTLELRRMLRNRRTVVFS
                     LVMPVLFYFMFGTGHKYSNLSAGHGNEAGAIMISMALYGAMLSTTGGGAMVAVERSQG
                     WSRQLRLTPLTAAAYIAVKVLVAMALGAIAVVVTYAAGASSSAQLDASVWVSTALLVW
                     VGSLVFAAFGVFMGYLLPSENVMQVLGPVLALFAFLGGLFVPLNQLGSTFQTIATYTP
                     MYGLNEIVHAPLTGDAPGAAAVINVLVWLTVFAGGAAWRFRRDTARV"
     gene            complement(6562..>7052)
                     /locus_tag="VGN19_07960"
     CDS             complement(6562..>7052)
                     /locus_tag="VGN19_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195859.1"
                     /translation="QRLRFALALLPDPALMALDEPTSGMDVEGRRDFWSAIRRDAQRG
                     RTVLFATHYLEEADAYADRIVLVRQGQIVADGTASEVKALVSGRTVRATLPDADLGAL
                     QGLPGVESVEVRGDTVLIASTDSDAVARHLLASTEARDLEITSRGLEDAFLSLTSEGE
                     NR"
BASE COUNT         1069 a         2561 c         2430 g          992 t
ORIGIN      
        1 gaatgtccgt gagcgaggcg acctggtcca ccacgacccg cagtgcagcg ccgtcggagt
       61 cggcggcctt ccagtcgccg agcaggtccg ggtccagccg gtgaatcggg tcctcgtgat
      121 aggccgtgac caggtcccgg accacggccc gctgttccgt gagcacgtcg acgcgctcct
      181 gggcgtgcat gacgaaatgc gcggccaccg ccttgagcac cgcgcactcc gctcgcgtct
      241 cgtcagggac caccagatcg gcggcatacc gcgtgagcgg cccatcgccg tgccgtgccc
      301 gggtggcctc ctcgaccgcg accacgaagc gtccgatcag ccgagaggtc atgtccttga
      361 gcgccgcgcg gtcggcacgc gacccgtcgt atgccgcggg gaccgtccct gtcgccagga
      421 cccgttcgag tgcggcgccg agcgcgtccg tgctcaggtc agcggcatac agcccagtcg
      481 ccaccgcgag cacgctgtcg acgtcgaacg ggtcgcgcag gcgccgcagg tcaagcctcc
      541 ccgaggcgat cgcgtcctcg acgtcgtgca ccgagtaagc gacgtcatcg gaccagtcca
      601 tgacgtcggc ctcgatgcaa cgctgccccg gtgggcggcc catccggtac cactcgaaca
      661 ccggaaggtc gtcgtcgtac accccgaact tcgctgtggg agtgggggtc tcagcctgcg
      721 tccacgggta cttggtcgcg gcatcgaggc tggctctggt caggttgagc ccggccgggc
      781 gcccatcggg gtgaatgcgc ttcggctcca gccgggtgag cagccgcagg gtctgggcgt
      841 tgccctcgaa gccaccgatg tccgcggcca ccgcgtcgag ggcctgctca ccgttgtggc
      901 cgaacggcgg gtgacccagg tcgtgggcca gacaagcggt gtcgaccacg tcggcgttgc
      961 acccgagcgc cgcgccgaac tcgcgcccga tctgggcaac ctcgagcgag tgggtcagcc
     1021 ggttgcgcac gaagtcgtca tcgcccggct gcaccacctg ggtcttggcc gagagccgac
     1081 gcaacgaggc cgagtggacc aggcgggccc ggtcgcgagc gaagtcgtcc cggtcggcgc
     1141 gtttgaggac cgggtcctcg tgcacccagc gctgccggtc cgcgtcgccg tacgtcaccg
     1201 ctcgactcta gggcccccat cagcctcgga cgcagcgcgg gccgcggccg ctgcgcgctc
     1261 gacccatttg ggctgctggc cgtagcgctg gctcgggatg agccgtcctg cggagctgtc
     1321 ctccaggagc tgggtcatcc gcttgtcgcg ggtggcctcc tgtttggcgg tcatcaccca
     1381 gttgacggcg accttgcgat acgaggcggt ggtctcggcc cagaacgcgg tcgccgcggg
     1441 gtcggcgacc agccgctccg cgaacggtgc gctgaactcc agctcgccct gctcgtaggc
     1501 gtagatcccc gatcgctcgg gacgacgtct cgcgtacgcc gccagcccgg gcggtttcat
     1561 ccggccctgc gcggcgagcc gctcgactgc ggcgatgttg atcgagctcc acgtgctgct
     1621 cggcttgcgc ggggtccacc gctgtcggac cgagtcctcg tcgaggcgtt ggacgaccga
     1681 gtcgatccac ccccagcaca gcgcctcgat caccgcctgc tcccaggtca gaccgcgctc
     1741 cccaacgtgc ttcttgtaca ggcccatcca cagctcggtg gccgtgtcgt ggttggcctg
     1801 cagccacgcc tcgaactcct ccggtccgtc gaagaacgtc gctgggcgct caggggtgcc
     1861 ccccggtgtc ccgatcatgg gcctaactaa ccacctgaca ccgacagctc cgcaccggcc
     1921 acagcttcgc gcgccgtgtc atccagcgac cgggagtcca gccagccgtc ggggagcgcg
     1981 acgcgccgcg gtgaacccgc ccgcccgcgc tgcccctcgg cggcgtcacc gggccacggc
     2041 gcgcgagcat ccatcgacgc ggccaaccgg tccagcgagt cgagggagtc caccagcgcc
     2101 aggtggtgtc gcaccgtcga gccagccgga aatcccttga ggtaccaggc gatgtgcttg
     2161 cggatgtctc ggcaggcctt gtactcgtcg tcgtagaagt cgaccaggta ctcggtgtgc
     2221 cggcgcatcg tggccagcac gtccccaagc gtgggctgca ctcgcgccgc ggtcccggca
     2281 aatgccgcgg ccaggtcggt gaagagccac ggacgtccca ggcagccccg tcccacgacg
     2341 acgccgtcgc agccggtctc gagcgtcatg cgcaccgcgt cctcggcgga ccagatgtcc
     2401 ccgttgccca ggacggggat cgtgcgaacg gtctccttca gccgggcgat ggccgaccag
     2461 tccgcctcac ccgagtaggc ctgcgaggcc gtgcgcccgt gcagcgcgac tgcggcaact
     2521 ccagcgcgct cggcgatgag acctgcctcc agatacgtca gatgatcgtc gtcgatgccc
     2581 ttgcgcatct tgatggtcac cggcacggca tacgcactcg cctcacggac agcggcagtg
     2641 acgatggcct cgaagaggtc ccgcttccag ggcagggcgg ctcccccgcc cttgcgggtc
     2701 accttcggga ccgggcaccc gaagttgagg tcgatgtggt cggcgcgatc ctccgcgacg
     2761 agcagccgaa cggccgcagc caccgtgtcg gggtcgaccc cgtagagctg gatcgaccgc
     2821 gggctctcct gcgggtcgtg ctcgatcagg cgcatggtct cgggggtccg ctcgaccagg
     2881 gcgcgcgagg tgatcatctc gctgacgtac agcgacgtgg ccccgctggc acccccggcc
     2941 tcaagcccct ggtcgccgta ctcgcggcag agcctgcgaa aggcgcggtt ggtgatgccg
     3001 gccatcggcg ccagaaccac cggggactcg atggtgtgcg ggccgatctg cagcggcggg
     3061 agcaccgggg cggaggtcgt cgtggcggtt gtcatggcaa ccgcattctc gcatctgatg
     3121 cttgactggc cgaatgagcg cactcatggc tgccgaggcc cttctgcagc ggggcctggg
     3181 cgggatggtg gtcgttgacg tccagtggaa cctcacgact gcgagcgggc cgcccggacg
     3241 agacctctac accgccgccc acctgccggg cgcccacttc gtcgaccttg acgccgagct
     3301 gtcggggcct cctggtccgg gcggccgcca cccgttgccg acagcgcacg cggtccagga
     3361 ggcactgcgc cggtgcggcg cgcgagcggg tgccccgatc ctggtctacg accaaggcgg
     3421 gtcgtatgcc gcggctcgcg cctggtgggt cttccggtac ttcggcgcca ccgaggtacg
     3481 cgtcctcgac ggcggggtgc cagcgtggcg ggaggcagga ggcccgacga ccgccgaggt
     3541 tcctgaggcc ggtgccgggg acttcgagac gcatcccggc ggccttccgc tgctggacgc
     3601 cgaggctgcg gccccgctgg cgcgccacgg catactcctc gacgtccgag cccccgagcg
     3661 cttccgcggc gaggtggagc cgatcgaccc ggtcgccggc cacatcccag cagcggtgag
     3721 ctcacccgtc accgacacgc tggcaccgga cggtcggatg cgcgatccgg atgacctgcg
     3781 ggcgcgcttc gcgaccctgg gggtcgccgc cgaccgaccg gtcggtgcgt actgcggctc
     3841 cggggtcacg gccgcgcagg aggtgctcgc cctgcacgag gcggggatcc ccgcggcgct
     3901 gtatgtcggg tcctggagcc actggatcac cgacccgcga cggcccatcg cgaccggcga
     3961 cgggacctag agccagccga actcgtcggc gatccggacg gcgtcggccc ggttgcgtgc
     4021 catcgtcttg ccgatcgccg acgacaggtg gttgcggacg gtgccctcgg acaggctgac
     4081 ctggcgggcg atgtcagcca ccgagccacc agcgcgtgcc gccaccagga cctgggtctc
     4141 gcgggcggtc agcggggact cgccaccggc cagagagtcc gcagccaggg ccgggtcgac
     4201 caccctgagc cccgcgtgca ctcggcggac cgcctcggcg agctggcgcg cgggcgtgtc
     4261 cttgacgacg aacccaccgg caccggcctg cagcgctcgc cgcaggaacc ctgggcgccc
     4321 gaacgtcgtg acgatcagca cccgcgtggc aggaacggcc tcccgcaacg ccgctgtcgc
     4381 cgcgatcccg tcgagaccag gcatctccac gtcgatgaga gcgacatctg ggcgggtctg
     4441 ttgtgccgca gcgacgacct cgtccccgcg gcccacctcg gacacgacct ccatgtcggg
     4501 ctccaagccc agcagcgtcg ccagagcccc tcggaccagg gcctggtcgt cggccaggag
     4561 cagtcggatg gtcatgcctg cgcccggacg tcaacgctgt catcggtgcc gagcggcgct
     4621 cccagggccg tcagcgacag ctcgaacccg tgcgggtcca cggcccgcgt ctccaggcgc
     4681 gcacccaccg cggtggctcg ctcccgcagc ccgaccaggc cgctgccggg actgcccggg
     4741 cgctgtccgg aaccgttgtc ggtgatggtg atcccgtccg tgcgcagcac cacccggcac
     4801 gtcgaggcac cgctgtgccg gacgacgttg gtgacgcctt cacgcaacgt ccacgcgcac
     4861 acctcgcgca gcggactgcc caccgcatca gtggccgtcg gaaggtccgc ctcgaccccg
     4921 gccgcggcga gggtggcccg agaccgcgcc agctctgccg gcagggagat ctcacggaac
     4981 cccgctacgg cctgacgtac atccgccagg gcgtcccgcg ccagccgttc gacatcggcg
     5041 acctcggcgc gggctcgttc cggactgaca tccatcaacc gagaggccag ctcggccttg
     5101 accgtgatga cggtgaggct gtgaccgagg atgtcatgca catcgcgcgc catccggtga
     5161 cgttcctcct ggatcgcgag ccgagcgttc tcctcgcgag cctcccccag agcccgctgg
     5221 cgctgactgg ccagcatccc cccggtgacg gccgccatgg ccagcaggat cgaggtgctc
     5281 acgctgccgt tgggctgcca tccggcgacg tgaagggtca gcagctcgta caggacgacc
     5341 agcaggacgc ccacggccag accgatccgc agtcggaacg tccacagacc ggcgaccgcc
     5401 aggaacaccc acgtggaggc gccctcctgg ccgatcgtca ggaccgcgag ccccgcgagc
     5461 acgaccaggc cggcccacga caccaggccc agccgcgaga ggagccagcc cggcccggtg
     5521 ctcgaccggc tcccccagac cgtcgcgcgc atcacggcga agtgccccag gtacagcacg
     5581 acgaacagtc ccagcacggc caggcccccg agccgcccca gcgtgcggtg caggtgccag
     5641 gcctgccgga aggcgtcgga gaggaagacg agccagatgc cggccatgaa gaagccgagc
     5701 atccagccgc gccaaccccg ccaaccccgc tcgtcggacc acaccggcag cccttccgag
     5761 ggcaggctca gacccgagcg gtgtccctgc ggaatcgcca tgctgcccct cctgcgaaga
     5821 ccgtcagcca caccaggacg ttgatcacgg cggccgcacc cggggcgtca cccgtcagcg
     5881 gtgcgtgcac gatctcgttg agaccgtaca tcggggtata ggtcgcgatg gtctggaacg
     5941 tcgaccccag ctggttgagc ggcacgaaaa gcccaccgag gaaggcgaac agcgccagca
     6001 cggggccgag gacctgcatg acgttctcgc tcggcagcag gtagcccatg aagaccccga
     6061 aggccgcgaa gacgagcgaa cccacccaca cgagaagggc ggtcgacacc cacacgctcg
     6121 cgtccagctg ggcgctggag gaggcgccgg cggcatacgt gaccacgacg gcgatggcac
     6181 ccagcgccat cgcgacgaga accttcactg cgatgtatgc cgcggcggtg agtggcgtga
     6241 gccgcagctg gcggctccag ccctggctgc gttcgacggc caccatggca cccccaccgg
     6301 tggtggacag catggcgcca tacagggcca tgctgatcat gatggcgccc gcctcgttgc
     6361 cgtgaccggc gctgaggttg gagtacttgt ggcccgtccc gaacatgaag tagaagagga
     6421 cgggcatgac cagcgagaag acgacggtgc ggcggttgcg caacatccgt cgcagctcca
     6481 gggtcagcaa ggtggcattg aagccgccca tcgacggcac cgaccgttgc ggaaggcccg
     6541 ggctgggggc ggtggaaacg gtcatcggtt ctctccttcg gaggtcagtg acaggaaggc
     6601 gtcctcgaga cctcgcgagg tgatttccag gtctcgggcc tctgtgctgg ccagcaggtg
     6661 cctggccacc gcatcgctgt cggtggaggc gatcagcacc gtgtctcccc gcacctcgac
     6721 cgactcgacg cccggaagcc cctgcagggc accgagatcc gcgtccggca gcgtggcgcg
     6781 gacagtccgg cccgacacca gggccttgac ctcggaggcg gtgccgtcgg caacgatctg
     6841 cccttgccgt accagcacga tccggtcggc gtacgcgtcg gcttcctcga ggtagtgggt
     6901 agcgaacagg accgtcctgc cccgctgcgc gtcgcggcgg atggcggacc agaagtcgcg
     6961 gcgcccttcc acgtccatcc cggacgttgg ctcgtcgagg gccatcaagg ccgggtcggg
     7021 caggagcgcg agggcgaagc ggagacgctg ct
//
LOCUS       DASYFY010000399         1999 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1026868, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000399 DASYFY010000000
VERSION     DASYFY010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026868"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..552)
                     /gene="rplI"
                     /locus_tag="VGN19_07965"
     CDS             complement(106..552)
                     /gene="rplI"
                     /locus_tag="VGN19_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEV7195860.1"
                     /translation="MKLILTHEVTGLGTAGDIVEVKDGYGRNFLMPRGLATPWTKGGQ
                     KQVDALTKGRAVREIKDLDQAKGIKGQLEATSVKVPAKSGQSGRLFGAISNGDIAAAV
                     KAAGGPELDKRKIEVKQAIKTLGSYEATVRLHPEVAATLTFEVVPA"
     gene            complement(583..819)
                     /gene="rpsR"
                     /locus_tag="VGN19_07970"
     CDS             complement(583..819)
                     /gene="rpsR"
                     /locus_tag="VGN19_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006503798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEV7195861.1"
                     /translation="MAKPVVRKPKKKANPLKAAKVENIDYKDTALLRKFISDRGKIRA
                     RRVTGVSVQEQRLIATAVKNAREMALLPYSSSAR"
     gene            complement(960..1580)
                     /locus_tag="VGN19_07975"
     CDS             complement(960..1580)
                     /locus_tag="VGN19_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEV7195862.1"
                     /translation="MAGDTVITIIGNLTADPELRFTPSGAAVANFTVASTPRQFDRQS
                     NEWKDGETLFMRCSVWRDAAENVAESCQRGMRVIVSGRLKSRSYETKEGEKRTVVEMD
                     VDEIGPSLRSATAKVNKTQRGGGGGGFGGGQGGQGGGWSGGSGGQAEDPWATGGSAGG
                     QSAPAASGGQGGWNNQPSGGQQSGGQQGGQQGGGWGAAPSYDEPPF"
     gene            complement(1641..1928)
                     /gene="rpsF"
                     /locus_tag="VGN19_07980"
     CDS             complement(1641..1928)
                     /gene="rpsF"
                     /locus_tag="VGN19_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEV7195863.1"
                     /translation="MRQYELMVILDPETEERTVDKTMDKFLTVVKNDGGTVDNVDIWG
                     RRRLAYDIKKKSEGIYVVVTMTAEPATAQELDRQLNLSESIMRTKLLRPGA"
BASE COUNT          274 a          666 c          683 g          376 t
ORIGIN      
        1 cccgcacctc gtcgggaacc gagcactcga cggggccggg catgacgaag ggccgggctc
       61 cgcgtggtgc ggagcccggc ccttcggccg atcagacctc gacggtcagg cggggacgac
      121 ctcgaaggtg agggtcgccg cgacctcggg gtgcagacgg acggtcgcct cgtaggagcc
      181 gagcgtcttg atggcctgct tgacctcgat cttgcgcttg tcgagctccg ggccaccggc
      241 agccttgacg gccgctgcga tgtcaccgtt gctgatggcg ccgaagaggc gaccggactg
      301 gccggacttg gccgggacct tgaccgaggt ggcctcgagc tggcccttga tgcccttggc
      361 ctggtcgagg tccttgatct cgcggaccgc gcgacccttg gtcagggcgt cgacctgctt
      421 ctggccaccc ttggtccacg gggtcgcgag accgcgcggc atcaggaagt tgcggccgta
      481 gccgtccttg acctcgacga tgtcgccggc cgtgccgagg ccggtgacct cgtgcgtgag
      541 aatgagcttc atggtgttct cctagttctc gagcggccgg gctcagcgag ccgagctcga
      601 gtagggcagc agggccatct cacgcgcgtt cttgacggcc gtggcgatga ggcgctgctc
      661 ctggacggac acaccggtca cgcgacgcgc gcggatcttg ccgcggtcgg agatgaactt
      721 gcgcagcagc gcagtgtcct tgtagtcgat gttctcgacc ttcgccgcct tcagcgggtt
      781 ggccttcttc ttgggcttgc gcacaacggg ctttgccatc gtggtgctct ccttcttgat
      841 gagagcccgg ggtcggtgcc ccgggatgga aatgaacttc tgggtatgcc gtccggctca
      901 atgcgccgga cgacggtgct gacctgctcg accgaggtcg aaggagatcg aaggagcgat
      961 cagaaggggg gctcgtcgta gctgggggct gcgccccaac caccaccttg ctggccgccc
     1021 tgctgaccac cggactgctg gccgccggac ggctggttgt tccagccacc ctgaccgcca
     1081 ctcgcagccg gggccgactg gccaccggcg gaaccgccgg tcgcccacgg gtcctcggcc
     1141 tggccgccgg agccaccgct ccaaccgccg ccctgaccac cctggccgcc gccgaagccg
     1201 ccaccgccac cgccgcgctg ggtcttgttg accttcgcgg tggcgctgcg cagggacggg
     1261 ccgatctcgt cgacgtccat ctccacgacg gtgcgcttct cgccttcctt ggtctcgtag
     1321 gaccgagact tgaggcggcc ggacacgatc acgcgcatgc cccgctggca cgactcggcg
     1381 acgttctccg ccgcgtcgcg ccacaccgag cagcgcatga acagcgtctc gccgtccttc
     1441 cactcattgc tctggcggtc gaactgccgc ggcgtcgagg ccacggtgaa gttcgcgacc
     1501 gcggcaccgg acggcgtgaa acgcagctcc gggtcggcgg tcaggttgcc gatgatcgtg
     1561 atgacggtgt cgcctgccat gcgtgggctc cgttcagtcc ttcgtcgggt gatcgagcgg
     1621 gttcagtgac tgtcgctgaa tcaggcgccg gggcgcagca gcttggtgcg catgatcgac
     1681 tcgctgaggt tcagctggcg atcgagctcc tgggcggtgg ccggctccgc cgtcatggtg
     1741 acgacgacgt agatgccctc ggacttcttc ttgatgtcgt aggcgagacg gcgacggccc
     1801 cagatgtcga cgttgtcgac ggtgccgccg tcgttcttca cgacggtgag gaacttgtcc
     1861 atcgtcttgt cgacggtgcg ctcttcggtc tccgggtcga ggatgaccat gagttcgtac
     1921 tgacgcatgc ttctaaccca cctcctctgg tctcggcggt cacgagtctc tctcgtgaca
     1981 ggagggttgc attcgtccc
//
LOCUS       DASYFY010000400         1683 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1131320, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000400 DASYFY010000000
VERSION     DASYFY010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131320"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VGN19_07985"
     CDS             <1..204
                     /locus_tag="VGN19_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016861 - intramolecular oxidoreductase
                     activity, interconverting aldoses and ketoses [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HEV7195864.1"
                     /translation="GDVVLVPHGWHGPAMAAPGYDLYYLNVMAGPGPERAWLICDDPA
                     HGWVRDTWADQPIDPRLPLGGTR"
     gene            201..>1683
                     /gene="iolD"
                     /locus_tag="VGN19_07990"
     CDS             201..>1683
                     /gene="iolD"
                     /locus_tag="VGN19_07990"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012037463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016823 - hydrolase activity, acting on
                     acid carbon-carbon bonds, in ketonic substances [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HEV7195865.1"
                     /translation="MTTQTVRLTVAQAVVRFLANQWSERDGERQRLFVGAFGIFGHGN
                     VAGIGQALLQDELSGEDGEHLPYVLARNEQAMVHTAVAYARQKDRLQTWACTASVGPG
                     STNMLTGAALATINRLPVLLLPSGTFATRVSSPVLQELEQPYAADLSVNDAFRPLSKF
                     FDRVNRPEQLPAALLGAMRVLTDPVETGAVTIALPQDVQAEAFDWPVDLFTTRVWRIA
                     RPLPELVDLKDAAALVRAAQRPLIVAGGGVHYSGAEEALRGLCEQTGIPVGESQAGKG
                     SLPHGHPQEMGAIGSTGTTAANALAAQADLVIGVGTRWSDFTTASRTAFQADAVRFVN
                     INVARFDAGKQAGLPVVADAREALTALATALEGYAVDQDYRDRQAALWSEWDAQVEAT
                     YRPPAGVTDALAPGLLTQGEVIGAVNELTDPRDVVLCAAGSMPGDLHKLWRVRERKAY
                     HVEYGYSCMGYEVPASIGIRLADPTRDVFAMVGDGGYLMMPTEL"
BASE COUNT          237 a          601 c          605 g          240 t
ORIGIN      
        1 ggcgacgtcg tcctcgtgcc gcacggctgg cacgggccgg cgatggccgc gcccggctac
       61 gacctctact acctcaacgt gatggcgggc cccggccccg agcgcgcctg gctgatctgc
      121 gacgaccccg ctcacggctg ggtgcgtgac acctgggccg accagccgat cgacccgcga
      181 ctgccgctgg gaggcacgcg atgaccacgc agaccgtccg actcaccgtg gcccaggccg
      241 tcgtgcggtt cctcgcgaac cagtggagcg aacgcgacgg cgagcggcag cggctcttcg
      301 tcggtgcctt cggcatcttc ggccacggca acgtggccgg catcgggcag gccctgctcc
      361 aggacgagct ctcgggcgag gacggcgagc acctgcccta tgtgctcgcc cgcaacgagc
      421 aggccatggt ccacaccgca gtggcctacg cccgtcagaa ggaccggctc cagacctggg
      481 cgtgcactgc gtcggtcggc cccggctcga ccaacatgct caccggtgcc gccctggcga
      541 cgatcaaccg gctccccgtg ctgctgctgc cgtcgggcac ctttgcgacg agggtgagct
      601 ccccggtgct gcaggagctc gagcagccgt atgccgccga cctcagcgtc aacgacgcct
      661 tccggccgct gtcgaagttc ttcgaccggg tgaaccgtcc cgagcagctg cccgccgcgc
      721 tgctgggagc catgcgcgtc ctcaccgacc cggtggagac gggggcggtc accatcgcgc
      781 tcccgcagga cgtgcaggcg gaggccttcg actggccggt cgacctcttc acgaccaggg
      841 tctggcgcat tgcgcgtccc ctgcccgagc tggtggacct caaggacgcc gccgccctcg
      901 tccgagcggc gcagcgtccg ctcatcgtgg ccgggggcgg cgtgcactac tcgggggccg
      961 aggaggcgct tcgcgggctg tgtgagcaga ccggcatacc cgtgggtgag agccaggcgg
     1021 gcaagggctc gctgccgcac gggcaccccc aggagatggg agccatcggc tccacgggaa
     1081 cgaccgccgc caacgcactg gcggcgcagg cggacctcgt catcggtgtc ggcacgcggt
     1141 ggagcgactt cacgactgcc tcgaggaccg ccttccaagc ggacgcagtg cgcttcgtca
     1201 acatcaacgt ggcgcggttc gatgcgggca agcaggccgg cctgcctgtg gtcgccgatg
     1261 ctcgcgaggc gctcaccgct ctggccacgg cgttggaggg gtatgccgtg gaccaggact
     1321 accgcgaccg ccaggcggcg ctgtggtccg agtgggatgc gcaggtggag gccacctacc
     1381 gcccgccggc gggggtcacg gacgcgctcg cgccggggct gctcacccag ggcgaggtga
     1441 tcggcgcggt caacgagctg accgaccccc gtgacgtcgt gctctgcgct gcggggtcga
     1501 tgccgggcga cctgcacaag ctgtggcggg tgcgcgagcg caaggcgtac cacgttgagt
     1561 acgggtactc ctgcatgggc tacgaggtgc cggcgtcgat cgggatccgc ctggccgacc
     1621 cgacgcgcga cgtcttcgcc atggtcggtg acggtggcta cctcatgatg cccaccgagc
     1681 tgg
//
LOCUS       DASYFY010000401         1610 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_816110, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000401 DASYFY010000000
VERSION     DASYFY010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_816110"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VGN19_07995"
     CDS             <1..470
                     /locus_tag="VGN19_07995"
                     /inference="COORDINATES: protein motif:HMM:NF013067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEV7195866.1"
                     /translation="VDPSLGPYLSRVAALDSEHYEDALNHDSGLMGLSGPSDMKELEQ
                     RRAGGDADAALAFDVMTYRLRKYIGAYAVALGRVDAIAFTGGIGEHSDALRGAVLDDL
                     AVLGVELDATNNRQPTPPERCISTPASAIPAYVIPTHEELEIARSCARVLATP"
     gene            complement(475..>1610)
                     /locus_tag="VGN19_08000"
     CDS             complement(475..>1610)
                     /locus_tag="VGN19_08000"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7195867.1"
                     /translation="DLVRQAAVTADDVNDPPQGVWLVRISGGSRAASPGSPSQVVGSS
                     QLASARPGMLSVDIGPAHWSAWVADRGGSRFVAVYDQSRHRDEEHRLLVATTLAGLLG
                     VLLAGSIGLLVGRRAIQPLGRALELQRRFVADASHELRTPLAVLNTRAQMIRRHLPAE
                     ASAEQRTEVDQLVGDTASLGEVVSDLLLAAQLEHTDLPARTVDLALVAREVVASMIPY
                     ADAAGVRLHLVGTENAAQNDFVVTGAPTALRRALTALVDNAIAHSQPGDPVRVRLRRE
                     PAGGGEASTPVHTVCLAVEDDGDGLEAGDASALTRRFARGAAASAGGGRRFGLGLALV
                     DEVVRAHHGQLEITGMPGLGSTFTLRLPASRRGVPESRSAALP"
BASE COUNT          247 a          591 c          552 g          220 t
ORIGIN      
        1 acgtcgaccc ttccctcggg ccatacctct cgcgcgtcgc cgcactggac agcgagcact
       61 acgaggacgc cctcaaccac gacagcggcc tgatgggact gtccgggccg tctgacatga
      121 aagagctcga gcagcgacga gccggcggcg atgcggacgc cgccctcgcg ttcgacgtca
      181 tgacctaccg gctgcgcaag tacatcgggg cgtatgccgt cgccctgggc cgtgtcgatg
      241 ccatcgcctt caccggtggg atcggtgagc acagcgatgc cctgaggggg gcggtcctgg
      301 acgatctggc agttctcgga gtcgagctcg acgcgacgaa caaccgtcag ccgaccccgc
      361 ccgagcggtg catcagcacg cccgcgagcg cgataccggc atacgtgatt cccacccacg
      421 aggagctgga gattgcgcgc tcgtgcgcgc gggtcctggc cacgccgtga cacctcaggg
      481 cagagccgct gacctcgact ctggtacccc gcgtcgtgag gcgggcaggc ggagcgtgaa
      541 cgtcgagccc agtccgggca taccggtgat ctccagctgc ccatggtgcg cccggaccac
      601 ctcgtccacc agcgccaacc ccagcccgaa ccgtcggccg ccaccggccg atgccgccgc
      661 tccgcgcgcg aaccgccggg tcagcgcgct cgcgtcgccc gcctccagcc cgtcgccgtc
      721 gtcctccacg gcgaggcaga cggtgtgcac cggcgtgctg gcttcgcctc cacccgcagg
      781 ctcccggcga agccggaccc gcaccgggtc cccgggctgg gagtgggcga tcgcgttgtc
      841 caccaaggcc gtcaacgccc gtctcagggc agtgggcgcc ccggtgacca cgaagtcgtt
      901 ctgggccgca ttctcggtgc ccaccaggtg gaggcgcacc ccggcggcgt cggcatacgg
      961 aatcatgctg gcgacgacct cgcgcgcgac gagcgcaagg tcgaccgtgc gagccggcag
     1021 gtccgtgtgt tcgagctgcg ccgccaggag caggtcggag accacctctc ccagcgaggc
     1081 ggtgtccccg accagctggt cgacctcggt cctctgctcg gcggaggctt ctgctgggag
     1141 gtgacgacgg atcatctgcg ctcgagtgtt gagcacagcc agcggggtgc ggagctcatg
     1201 actggcgtcg gccacgaaac gtcgttggag ctccaatgcc cgccccaggg gctggatggc
     1261 ccgtcgcccc acgagtaggc cgatggaccc ggcgagcagg acgccgagaa gcccggccag
     1321 cgtggtggcg accaggagcc gatgctcttc gtccctgtgg cgggactggt cgtacacggc
     1381 gacgaagcgg ctgccacccc ggtctgccac ccaggcgctc cagtgtgcgg gcccgatgtc
     1441 aacggacagc attccaggcc gggccgacgc cagctgggac gagccgacca cctgcgatgg
     1501 cgaaccaggg ctggccgccc gtgaaccgcc gctgatgcgc accagccaca ccccctgcgg
     1561 cgggtcgttg acgtcatcgg cggtgaccgc ggcctgccgc accaggtccc
//
LOCUS       DASYFY010000402         2092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_554488, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000402 DASYFY010000000
VERSION     DASYFY010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554488"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VGN19_08005"
     CDS             complement(<1..212)
                     /locus_tag="VGN19_08005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195868.1"
                     /translation="MSRRRSAVWATLVGAVCVYAVVRLLTAPTRPLRTDVLQGVLVGV
                     GLAVVTVEVLARAKAITVNGWVTMLE"
     gene            complement(221..1246)
                     /gene="glsA"
                     /locus_tag="VGN19_08010"
     CDS             complement(221..1246)
                     /gene="glsA"
                     /locus_tag="VGN19_08010"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HEV7195869.1"
                     /translation="MTRLSMHEQLPFDEDATASPISTGELPKAEEVRVVVSEAYERYR
                     SNGDGTVADYIPALAQACPDWFGISVVGARGKSFEIGDVAVTFSIQSVSKPFVFALVC
                     EALGYGEARRRLGVNSTGFPFDSLMAVELNTDRTMNPLVNAGALAATSLAPGATAPEK
                     WELIRQGLSRFAGRELSVDEQVYASESATNLRNQGIAHLLESYGRLYFDPDEATDIYT
                     RQCSLDVSVHDLAVMAATLANGGVNPVTGDVVVGRGVCRRVLAVMATAGLYELSGDWL
                     YEVGMPGKSGVSGGIVTVAPGKGGLATFSPPLDPAGNSVRGQLATKYLAERLGLNLFA
                     SVAASRD"
     gene            complement(1301..>2092)
                     /locus_tag="VGN19_08015"
     CDS             complement(1301..>2092)
                     /locus_tag="VGN19_08015"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEV7195870.1"
                     /translation="LAHFSPHWWWAFGAVSAAALVVLLSFVFPVLVEPVFNTFTPMPD
                     GPLRDELSGMAAQDGVPVRDVLVADASRRTTGLNAYVSGIGATRRIVVFDTLLREAAA
                     GEVRSVVAHELGHAKARDTELGTLLGATGAAAAFVSLYLLGQSDALLRRAGVDSISSP
                     RAIGLVLAVAALAGLVSRPVDSLVSRRLEARADHHALRLTGDPAQFAAMQLRLAAVNI
                     ADVHPPRLEHLLFSTHPDTVERLAAAREAEGNPARGRPGAPGATG"
BASE COUNT          329 a          748 c          729 g          286 t
ORIGIN      
        1 cattcgagca tcgtgaccca gccgttgacc gtgatggcct tggccctcgc caggacctcg
       61 accgtcacga ccgccaggcc gacaccgacc aggaccccct gcaggacatc ggtacgcaag
      121 ggtcgtgtcg gggcagtcag caacctgacg acggcgtaga cgcacaccgc cccgacgagt
      181 gtcgcccaga ccgccgacct gcgcctgctc atgacgtccc tcagtctcgc gacgccgcca
      241 cggaggcaaa gagattgagg ccgagccgtt cggcgaggta cttggtcgcg agttgaccgc
      301 ggacgctgtt gccagccggg tccaagggag gggagaacgt cgccaggccg cccttgccgg
      361 gcgccacggt gacgatgccg ccactcaccc cgctcttccc cggcatcccg acctcgtaga
      421 gccagtcacc cgacagctcg tagagacccg cggtggccat gaccgcgagc acgcgtcggc
      481 acactccgcg accgacgacc acgtccccgg tcaccgggtt gacgccgccg ttcgccagcg
      541 tggccgccat gaccgccagg tcatgcacgc tcacatcgag tgagcactgg cgggtgtaga
      601 tgtcggtggc ttcgtccggg tcgaagtaga gccggccgta gctctccagc aggtgggcga
      661 tgccctggtt gcgcaggttg gtcgcggact cggaggcgta gacctgctcg tcgacgctca
      721 gctcacggcc cgcgaaccgc gacagcccct gcctgatcag ttcccacttc tccggcgcgg
      781 tcgctccggg cgcgaggctc gtggccgcca gcgcccctgc gttgaccaac gggttcatcg
      841 tccggtcagt gttgagctcg accgccatca gggagtcgaa ggggaacccg gtgctgttga
      901 cgccgaggcg gcgacgggcc tccccgtatc cgagggcctc gcacaccagg gcgaagacga
      961 agggcttcga gacgctctgg atcgagaacg tcaccgcgac gtcaccgatc tcgaacgact
     1021 tcccgcgagc cccgaccacg gagatcccga accagtccgg acacgcctgc gcgagcgccg
     1081 ggatgtagtc ggccaccgtt ccgtcgccgt tcgagcgata ccgctcgtac gcctcgctga
     1141 cgacgacccg gacctcctcc gccttgggca gctcgccggt ggagatcggc gacgccgtgg
     1201 cgtcctcgtc gaacgggagc tgctcgtgca tcgacagcct ggtcatgggg tcgcctccat
     1261 cgctggatgc cggaagccta cggcagtcga gggccggctc tcagccggtt gcgccaggtg
     1321 cccccggcct gccgcgcgca gggttgccct cggcctcgcg tgctgccgct aggcgttcca
     1381 cggtgtcggg gtgggtgctg aagaggaggt gctcgaggcg gggcgggtgg acgtcggcga
     1441 tgttgacggc ggccagccgc agctgcatcg ccgcgaactg ggcggggtcg ccggtgaggc
     1501 gcagcgcgtg gtggtcggca cgggcctcga gccgccggga gaccaggctg tcgaccgggc
     1561 ggctgaccag gccggccagc gccgccacgg ccaggaccag cccgatcgcc ctcggtgagc
     1621 tgatggagtc caccccggcc cggcgcagga gtgcgtccga ctggcccaag aggtagagcg
     1681 acacgaaagc cgctgcggcg ccggtcgccc cgagcagcgt gcccagctcg gtgtcgcggg
     1741 ccttggcgtg gcccagctcg tgcgcgacga cactgcgcac ctccccggcg gctgcctcac
     1801 gaaggagcgt gtcgaagacc acgatgcgcc gggtggcgcc gatgccggag acgtaggcgt
     1861 tgagcccggt cgtgcgccgc gacgcgtccg ccaccagcac gtcccgcacc ggcacgccgt
     1921 cctgggcagc catcccggac agctcgtccc gcagcggccc gtccggcatc ggggtgaagg
     1981 tgttgaagac cggctcgacg aggacaggga agacgaagga cagcaacacc accagcgcgg
     2041 ctgcgctcac tgcgccgaac gcccaccacc agtgcggcga gaagtgagcc aa
//
LOCUS       DASYFY010000403         2867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_185858, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000403 DASYFY010000000
VERSION     DASYFY010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2867
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185858"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VGN19_08020"
     CDS             <1..437
                     /locus_tag="VGN19_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEV7195871.1"
                     /translation="RIPLVANEIEYSLLNRSAEPDLLGAAEALGFGLLPWSPLGRGVL
                     TGKYRHGIPADSRAASRDFPRFTARYLDDRATGIVEALAIAARGLGVSPTEVALAWVR
                     DRPGVVSPVVGARTTAQLRTSLASESLELPEEIVAALDEVSD"
     gene            complement(442..750)
                     /locus_tag="VGN19_08025"
     CDS             complement(442..750)
                     /locus_tag="VGN19_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein"
                     /protein_id="HEV7195872.1"
                     /translation="MTADPRGALANLVSALERHLEASSSKRGEEDPTVIAAYDDLADA
                     FAAYDDALLQAYGEMTPLDIYDGEDDDDELDDHSDEDGDPGVYSGLDDADYEEEDDKS
                     "
     gene            790..972
                     /locus_tag="VGN19_08030"
     CDS             790..972
                     /locus_tag="VGN19_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5703 family protein"
                     /protein_id="HEV7195873.1"
                     /translation="MVEYEYRVLSFPRDVSRSDICRTLSDHAEYGHWELHRTRIYLGG
                     NQRTWLRRKIIRVPRG"
     gene            complement(1030..1422)
                     /locus_tag="VGN19_08035"
     CDS             complement(1030..1422)
                     /locus_tag="VGN19_08035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195874.1"
                     /translation="MPGLLGLCVRVTRQVAPIQTTLVVLDQNLIQQLTAAGVPLQQLV
                     VPCPTGSGSTGTTSTGSTGPIAGQGSGTVANSALAGEALGDGTGSGHLAFTGMDLVPA
                     AALAAALLWIGALMLRVSRRIAPVRVRS"
     gene            1580..2053
                     /locus_tag="VGN19_08040"
     CDS             1580..2053
                     /locus_tag="VGN19_08040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195875.1"
                     /translation="MRQTLATGVVALTDPGDDVAPPPLEDGAAPVLAAAGARPEAGVG
                     VVAGPVAGLVPGFVTGLPAVGGVRSAARPPTGAGTDGPADGESSGLAAAVTGASALVT
                     GARAAVTGVGRGAGKPMAWLMPALLMTSPPMATATAVKRPKPFERSIEATPSSCS"
     gene            complement(2138..>2867)
                     /locus_tag="VGN19_08045"
     CDS             complement(2138..>2867)
                     /locus_tag="VGN19_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase dimerization domain-containing
                     protein"
                     /protein_id="HEV7195876.1"
                     /translation="QTAEKGILWLRLVATGRAGHGSVPNDENAVVRLAQAITRIDQHP
                     WPREYIASVRQLLDELSELTGTPYADGDVDELLGHLGGAQGFVRGTLQDTANFTMADA
                     GYKHNVIPQSASAALDARFLPGHDDELLATIRELAGEHVEVQVVHHDIALDAPFEGPL
                     VEAMKAALLAEDPDARILPYCLSGGTDNKALSRLGITGYGFAPLQLPADLDFAPMFHG
                     IDERVPVSALEFGARVLQRFIATC"
BASE COUNT          422 a          940 c         1065 g          440 t
ORIGIN      
        1 ccagaatccc cttggttgcc aacgagatcg agtactcgct gctcaaccgc tcggccgaac
       61 cggacctgct cggggcggcc gaagccctgg ggttcggcct tctcccgtgg tcgccactgg
      121 gccggggggt cctgaccggc aagtaccgtc acggcatccc cgccgactct cgcgcggcct
      181 cgagggactt cccacgcttc accgcccgct atctcgacga ccgggccacc ggcatcgtcg
      241 aagcgctcgc gatcgccgca cgcgggctcg gcgtcagtcc gacggaggtg gcgctggcct
      301 gggtccgaga ccgtcctggc gtggtcagcc ccgtggtggg ggccaggacg acggcccagc
      361 tgaggacgtc gttggcgagc gagtcactcg agctgccaga ggagatcgtg gccgcgttgg
      421 acgaggtctc ggactgaccg ctcagctctt gtcgtcctct tcctcgtagt cggcgtcgtc
      481 caagccggag tagacccccg ggtcgccgtc ctcatcggag tggtcgtcga gctcgtcgtc
      541 gtcgtcctcg ccgtcgtaga tgtccagggg cgtcatctcg ccgtaggcct gtagcagcgc
      601 atcgtcgtag gcggcgaagg cgtcagcgag gtcgtcgtag gccgcgatca cggtggggtc
      661 ttcctcgccc cgcttggacg aggatgcctc cagatggcgc tccaaggcgc tcaccaggtt
      721 ggccagcgcg ccacgcgggt ctgcggtcat gccccgaccg tagcgggttc cgggtagaaa
      781 tggcgggtga tggttgagta cgagtaccgc gtgctgagct tcccgcgaga cgtttcccgc
      841 tcggacatct gcaggacact gtcggaccac gcggagtacg ggcactggga gctgcaccgg
      901 acccgcatct accttggcgg caaccagcgg acgtggttgc gccgcaagat catccgcgtt
      961 ccgcgcggct gaggagtggg tatgccgcgg cggcataccc actccttgcg aagtgctcct
     1021 gcaggccggt caggaccgaa cgcgcaccgg cgcgatgcgg cgggacacgc ggagcatcag
     1081 ggctccgatc cacagcaggg ccgcggccag cgcggcggct gggaccaggt ccatgcctgt
     1141 gaaggccagg tgtccggagc cggtcccgtc accgagagcc tcgcctgcca aggcgctgtt
     1201 tgcgacggtg ccagaaccct ggcccgcgat gggtcccgtg gagcccgtcg aggtcgtgcc
     1261 ggtcgagccg cttccggtcg ggcacggcac gacgagctgc tgtaggggca cccctgccgc
     1321 ggtgagctgc tggatgaggt tctggtcgag aacgaccagc gtggtctgga tcggtgcgac
     1381 ctgccgggtc acccgcacgc agaggccgag gagcccgggc acggagacgt ccactccagc
     1441 gacttggccg ggcgctggcg ccgcgccagg cgggcacggt gcgaacacct gggggaagtg
     1501 ctggacgagc ggggaggaaa ggtcttgacc gaccgctgtc agcccgatgt cgaacacagg
     1561 cgacgaagcg ccggtgggga tgaggcaaac gctcgcgacg ggggtggtcg ccctcaccga
     1621 tccaggagac gacgtggcgc caccgccgct cgaggacggc gcagcaccgg tgctcgcggc
     1681 ggccggagcg cgtcccgagg cgggggtcgg ggtcgtggcg ggccctgtcg cggggctggt
     1741 gccggggttt gtcacgggct tgccggccgt aggcggggtg aggagtgcgg cgaggccacc
     1801 gactggcgcg gggacggacg gacctgccga cggcgagagc agcgggctcg cggcggccgt
     1861 gaccggagcc agcgccctcg tcaccggggc cagggcggcc gtcaccggtg ttggcagggg
     1921 tgcaggcaag ccaatggcgt ggctcatgcc agcgctgctg atgaccagtc cacccatggc
     1981 gaccgccact gcggtgaagc gacccaaacc cttcgagcgt tccatcgaag ccaccccgtc
     2041 ttcctgctca tgaccctgtt gtcattgggt gcaacgacgt gggttgggcg caggctacga
     2101 acgacgacgt gtggcagccg tcactgggac ctcgggctca gcaggtggcg atgaagcgct
     2161 gcagcacccg ggcgccgaac tccagtgccg acaccggaac ccgctcgtcg atgccgtgga
     2221 acatgggtgc gaagtcgagg tcggcaggca gctgcaaggg cgcgaagccg tacccggtga
     2281 taccgagtcg gctcaacgcc ttgttgtcgg tgccacccga caggcagtac ggcaggatgc
     2341 gggcgtcggg atcctcggcc agtagggcag ccttcatggc ctcgacgagc ggaccctcga
     2401 agggcgcgtc cagggcgatg tcgtggtgca cgacctggac ctcgacgtgt tcccccgcga
     2461 gctcgcggat cgtggccagc agctcgtcgt cgtggcccgg caggaaccgg gcgtcgaggg
     2521 cggccgaggc tgactgcggg atgacgttgt gcttgtatcc cgcgtcggcc atggtgaagt
     2581 tcgccgtgtc ctggagcgtg ccgcgcacga atccctgggc gcccccgagg tggccgagga
     2641 gctcgtcgac gtcgccatcg gcatacggcg ttccggtgag ctcactgagc tcgtcgagca
     2701 gctggcggac ggaggcgatg tactcacggg gccaagggtg ctggtcgatc cgggtgatcg
     2761 cctgggccag cctgacgacg gcgttctcgt cgttggggac cgagccgtgg ccggcacgcc
     2821 cggtcgccac gaggcgcagc cagaggatcc ccttctctgc cgtctgc
//
LOCUS       DASYFY010000404         2196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_501385, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000404 DASYFY010000000
VERSION     DASYFY010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501385"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..1694
                     /locus_tag="VGN19_08050"
     CDS             96..1694
                     /locus_tag="VGN19_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195877.1"
                     /translation="MPDSRAIPADLEIRSSPRRPVDDPTLGIVVDRPDGPAAEHRLVT
                     LGDSLTHGFMSLAVFKTGLSWPATVAYELGLGPEAFTFPVYEPPTGPGGLPLDLERLA
                     RSFESRFGASLDFAEIIRAGLWAHGYLSGIEDYWETGDGSATPPDGPAFHNMAVYGWD
                     LLDPQLLTAPIVEAHIAEPAHESLFVPMVAHHQDRAAWPILKRARKDAGPGTVLDAAA
                     GMGSAGEGIETLVVMLGSNNALGSVVKLVPAWTEPGYEDLTPAQRLEAKKDFHVWRPA
                     AFKADWDELVAAVDAVGAQHVLVATVPSVTIAPIAHGTPAKVRADSRYFEYYTRPWIA
                     DHDFEPDRDPNITADEARAIDSAIDAYNETIIGSVAAARQAGKDWYVLELGGVLDRLA
                     RRRYIESPQAQPPWWTPYPLPPQLAGLDPVPDTLFFRSGPGGRTAGGLFSLDGVHPTT
                     SSYGIIAQEVIKVMQLAGVAFAGRDGQPRQGPVVVDFDRLLAADSLLGRPPASIGNTL
                     SLLGWLDERLDWVQRILPFAPNPM"
     gene            complement(1825..>2196)
                     /locus_tag="VGN19_08055"
     CDS             complement(1825..>2196)
                     /locus_tag="VGN19_08055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195878.1"
                     /translation="DFGPERSRTWPNVDPDHFTVHEQGPDWAEVTEGTRMGWERERYS
                     WDAASGIVTIDTLDSNLWASGSGWRYELVPASEGTDLRVSLTRVPKSLTARLVAALLP
                     IAGPRGLGRQFQSVLRRAEGR"
BASE COUNT          317 a          786 c          762 g          331 t
ORIGIN      
        1 agaacccctg aggaaccatc tgtttgctgt agggatcgct ctgtccggcg cggcatcctt
       61 ggtttgatgg tggtggaggg cgacgggagg gtgtgatgcc ggacagtcgg gcgatcccag
      121 cagacctgga gatccggtcc agccctcgtc ggccggtcga cgaccccacc ctggggatcg
      181 tcgtcgatcg acccgacggc cccgcggccg agcaccggct ggtgaccctg ggcgactccc
      241 tgacccacgg gttcatgagc ctcgcggtct tcaagaccgg cctgtcgtgg cccgccacgg
      301 tggcttacga gctcgggctg ggaccagagg ccttcacctt cccggtgtac gagccaccga
      361 cgggcccggg aggccttccc ctggacctcg aacggttggc gcgatccttc gagagtcgtt
      421 tcggggcaag cctggacttc gcagagatca tccgcgccgg gctgtgggcc cacggctacc
      481 tctccggtat cgaggactac tgggagacgg gggacggcag cgcgacgccg ccggacggtc
      541 cggccttcca caacatggcg gtgtacggat gggacctgct ggacccccag ctgctgaccg
      601 cgcccatcgt cgaggcccac atcgccgagc cggcgcacga gtccctgttc gtccccatgg
      661 tcgcgcacca tcaggaccgg gcggcttggc cgatcctgaa gcgcgcgcgc aaggacgccg
      721 gccccggtac ggtcctggac gctgctgcgg gcatgggctc ggccggcgag gggatcgaga
      781 cgctcgtggt catgctcggg tcgaacaacg ccctgggttc ggtggtcaag ctcgtccccg
      841 cctggaccga gccggggtac gaggacctga cgccggcgca gcgtctcgag gccaagaagg
      901 acttccacgt gtggaggccc gcggcattca aggctgactg ggacgagctg gtggccgccg
      961 tggacgccgt cggcgcccag cacgtccttg tcgcgacggt gccgtcggtc acgatcgcgc
     1021 cgatcgccca cggcactccg gccaaggtcc gggcggactc gcgctacttc gagtactaca
     1081 cacgcccgtg gatcgccgac cacgacttcg agccggaccg cgatccgaac atcaccgcgg
     1141 acgaggctcg cgccatcgac tccgccatcg acgcgtacaa cgagacgatc atcggctcgg
     1201 tcgccgcggc ccggcaggct ggcaaggact ggtacgtgct ggaactgggt ggtgtgctgg
     1261 accggctggc caggcgccgg tacatcgaga gcccgcaggc ccagccgccc tggtggaccc
     1321 cgtacccgct gccgccgcag ctggccgggc tggaccccgt gccggacacg ctgttcttcc
     1381 ggtccggtcc gggtgggcgc acggcgggcg gcctgttctc cctggacggg gtccatccga
     1441 ccaccagttc gtacggcatc atcgcccagg aggtcatcaa ggtgatgcag ctggccgggg
     1501 tggcgttcgc cggccgcgac gggcagcctc gtcagggacc ggtcgtcgtc gacttcgacc
     1561 ggctcctcgc cgccgactcg ctcctgggca ggccgccggc ctcgatcgga aacaccctga
     1621 gcctgctcgg ctggctcgac gagcggctgg actgggtgca gcgcatcctg ccgttcgcgc
     1681 ccaacccgat gtgacccccc gtcacccgcc gggccggccg gggggcgttg ccccggtatg
     1741 ccgccagctc gcccaggacc cgccccgact cgctgacccg ccccggcgcg ctgactgcgc
     1801 cgcagtgacg aaggctgggc gaggtcagcg accctcggcc ctgcggagca ccgactggaa
     1861 ctgccttccc agtccacgtg gtcccgcgat ggggagcagc gcggccacaa gtcttgccgt
     1921 caacgacttc ggcacccggg tgagcgagac tcgcaggtcg gtgccctccg aggccggcac
     1981 gagctcgtac cgccagccac tgcccgacgc ccacaggttc gagtcgaggg tgtcgatcgt
     2041 gacgatgccg gacgcggcat cccaggagta gcgttcccgc tcccagccca tgcgcgtgcc
     2101 ctcggtcacc tcggcccagt ccggaccctg ctcgtgaacg gtgaagtgat cagggtcgac
     2161 gttcggccac gtgcgagacc gttcgggacc gaagtc
//
LOCUS       DASYFY010000405         2493 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_764233, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000405 DASYFY010000000
VERSION     DASYFY010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764233"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..164)
                     /locus_tag="VGN19_08060"
     CDS             complement(<1..164)
                     /locus_tag="VGN19_08060"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7195879.1"
                     /translation="MITVLLADDQSLIRSGLAAVLGREPDIDVVGEASTGRDAVSAAI
                     RLRPDVVLMD"
     gene            complement(161..1360)
                     /locus_tag="VGN19_08065"
     CDS             complement(161..1360)
                     /locus_tag="VGN19_08065"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEV7195880.1"
                     /translation="MSRRIERLQVLDAAIAVGFALAAEIERSVSSTNVLRGTAAPGLD
                     QVLVLVPVIPLLWRRRNPFAALLATTAALGLVGGVFHGTICFFGGLFALLTALYAASS
                     YAPAPTDKVAFAIPFGLYGSLPLFAGSYFQVPSDLVFATVLTTGTWLAGQGGRRWRRQ
                     SHELAIALVEVEAARAAHAELAVQAERTRLARELHDIVTHGLSVVVLQANRARLELRD
                     RPDEARDAIVAIESTGREALVEMRRLLGVLRRGPDSRPDSGLVPPPGLASLPTLLDRL
                     RRAGLDVIASGQAGPALPRALDLTAYRIIQESLTNALRHAHPAAARIEISRLDGSLRL
                     RVSSPLGQPAPPAPNGTLGVFGGQGLAGLRERVVLFGGSCFAGEEADGTFVVDVSLPV
                     PEHEAAS"
     gene            1536..2261
                     /locus_tag="VGN19_08070"
     CDS             1536..2261
                     /locus_tag="VGN19_08070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195881.1"
                     /translation="MTNTVMTTQAASTISPLGQPMLLRRRLSALALAAAGVAIVAGHA
                     LSVDSGQSSNAYLADFTAHHVRGTIGGLTVAVGAFLLLPGLAAALRLVTGRGGRLATV
                     AAGLWGFGAVALGAGDVMQTLVMSALVPAHRDTARAIIDVAQQGILGLPFLFAPAFIL
                     GGALFALALLRSHAVPTWLGVLSLVGPLLVPASSAGGLLSAALPLLPLGASLVLLAIR
                     AGAGSRTTRLESTTTAPQTILGA"
     gene            complement(2308..>2493)
                     /locus_tag="VGN19_08075"
     CDS             complement(2308..>2493)
                     /locus_tag="VGN19_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013115525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195882.1"
                     /translation="RGALGLIAQAGGGVVEGYPHATDGQKVSVLYNGTRVLFEQAGFS
                     YIRPKGMKNCVMRTEIP"
BASE COUNT          380 a          872 c          842 g          399 t
ORIGIN      
        1 atgtccatga gcaccacgtc cgggcgcagt cggatcgccg cgctgaccgc atcccgtccc
       61 gtacttgcct ctccgaccac gtcgatgtcg ggctcccggc cgagcactgc cgccaggccg
      121 ctgcggatga gggattggtc atcggcgaga agcacggtga tcacgacgcg gcctcatgct
      181 cggggacggg cagggacacg tccacgacga aggtgccgtc cgcctcctcc cccgcgaagc
      241 agctgccacc gaacagcacg acccgctctc gcagccccgc caggccctgt cctccaaaaa
      301 cgccgagcgt cccgtttggc gcgggcgggg cgggctggcc cagtgggctg ctgacccgaa
      361 gccgtagcga gccgtcgagc ctgctgatct caatcctggc ggccgccggg tgcgcatgtc
      421 tcagtgcgtt ggtgagtgac tcctggatga tccggtatgc cgtgaggtcc agggccctgg
      481 gtaacgctgg ccctgcttgg ccactggcga tgacgtccag acctgctcgc cgcagccggt
      541 cgaggagagt agggaggctc gccagccccg gcggcggcac caggccggag tctgggcgcg
      601 aatccgggcc gcggcgcagg acgccgagga gccggcgcat ctcgaccagg gcctcccggc
      661 cggtcgactc gatggcaacg atcgcatccc tagcctcgtc tggccggtca cgcagctcga
      721 gacgggcacg gttggcctgc agcacgacga cgctcagacc gtgggtgacg atgtcgtgca
      781 gctctcgtgc gagtcgcgtg cgctcggcct gaactgcgag ctcggcgtgc gcggcccggg
      841 cagcctcgac ctcgaccagc gcgatcgcca actcgtggct ctgtcgtcgc caccgtcgtc
      901 cgccctgacc agccagccac gtccccgtcg tcagtacggt cgcgaagacc aggtcgcttg
      961 ggacctgaaa gtagctcccg gcgaagagcg gaaggctgcc gtaaaggccg aagggaatgg
     1021 cgaaggcgac cttgtcggta ggagcggggg cgtagctcga cgcggcatac aaagcagtga
     1081 gcagcgcaaa aaggccaccg aagaagcaga tggtgccgtg gaagactcct ccgacaagtc
     1141 ctagcgcggc agtggtcgcc aggagcgccg cgaacgggtt ccgtcgtcgc cagagcagcg
     1201 ggatgaccgg cacgaggacc aggacctggt cgagacccgg cgcagcggtc ccgcgcagaa
     1261 cgttggtcga cgacaccgag cgctcgatct cggcggcgag cgcgaaaccg accgctatgg
     1321 cggcatcgag cacctgtagg cgctcgatcc gtcgactcat ggggcgagcg taggccgact
     1381 gatagtcgtg gtggatcggt ctcagggatg agtcggactg gcccgaacgg cacctgtgct
     1441 ctggtcgtga tggccgatcc ggctcggagg ctcggctccc taacgtcgtg gcaagccccg
     1501 atcggggcgt cccaccacga tagaaggaca cgaccatgac gaacaccgtg atgaccacgc
     1561 aggcggcttc gaccatctct ccgctcgggc agccgatgct gctccgtcga cgactctccg
     1621 ctctggcact ggcagccgcc ggtgtcgcca tcgtcgccgg ccatgcactc agcgtcgact
     1681 ccggccagtc atcaaacgcc tacctcgcgg acttcacggc tcaccacgtc agggggacga
     1741 tcggcggttt gaccgtcgcc gtcggcgcgt tccttctgct gcccggcctc gccgccgcgc
     1801 ttcgcctggt caccggccgc ggcgggcgtt tggccacggt tgccgcaggt ctctggggct
     1861 ttggcgccgt ggctctcggc gctggcgacg tcatgcagac cctggtgatg tccgcgctgg
     1921 tgccggcgca ccgggacact gcccgggcca tcatcgacgt ggcgcagcaa ggcatcctcg
     1981 gtctgccctt cctcttcgcg ccggccttca tccttggcgg tgcccttttc gccttggccc
     2041 tgctgaggtc ccatgccgtg ccgacctggc tcggcgtgct ctcgctcgtc ggcccgctcc
     2101 tcgtgcccgc cagcagcgct ggcgggctgc tcagcgccgc gttgcccctc cttcccttgg
     2161 gcgcttccct ggtgttgttg gccatccgag ccggagccgg aagccggaca actcggctcg
     2221 agtcgacaac caccgcgccg cagacgatcc tgggtgccta gaacgcccta cgcgcagtgg
     2281 cgggtggggg ccgaaagacc aagcgggtca ggggatctcg gtgcgcatca cgcagttctt
     2341 catgcccttg ggtcggatgt agctgaagcc ggcctgctcg aagaggaccc gagtgccgtt
     2401 gtatagaacc gagaccttct gaccgtcggt ggcatgcgga tacccctcca ccactccgcc
     2461 tccggcctgc gcgatgaggc ccaaggctcc ccg
//
LOCUS       DASYFY010000406         2122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1500337, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000406 DASYFY010000000
VERSION     DASYFY010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1500337"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VGN19_08080"
     CDS             <1..253
                     /locus_tag="VGN19_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HEV7195883.1"
                     /translation="HMVGDRPWQAQGRATNVWPLAILSMGESWHNLHHADPTCARHGV
                     EPGQVDSSARVIWVFERLGWARDVRWPTAKRLDARRIAA"
     gene            387..986
                     /locus_tag="VGN19_08085"
     CDS             387..986
                     /locus_tag="VGN19_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195884.1"
                     /translation="MTGKQRREQPIHVGRKLFADKGFECTSVEEIASKASVSKPVVYE
                     HFGGKEGLYAVVVDREIAALLGGITGALSAELGSRQTLERAASALLDYIETNTDGFRI
                     LVRDSPAGQSTGSFASLISDVASQVEHILAAEFKRRKLDPKTAPLYAQMLVGMVALTG
                     QWWLDSRKMKKADVAAHLVNLAWNGLAGLEKNPALSGAH"
     gene            complement(983..1783)
                     /locus_tag="VGN19_08090"
     CDS             complement(983..1783)
                     /locus_tag="VGN19_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEV7195885.1"
                     /translation="MSTSWDPRQYAAFADERSRPFRDLMARVGAEHPDLVVDLGCGNG
                     PLTLSLAERWPQARIVGVDQSPQMLEAARDADPAGRVEWVEADVAGLDLGFLGSAPYV
                     IVSNATLQWVPGHLGLLARWAAALAPGGWLAMQVPGNLDAPSHALMRLVAQEHPAAER
                     LRPALDRLAVAMPAAYVELLGGAGLVVDCWETTYQHILDPLGRQSNPVLEWVSGTGLR
                     PVLQALTDEGERAAFLEEYDVRLRAAYPRTEAGVVFPFRRIFAVGHAP"
     gene            1837..>2122
                     /locus_tag="VGN19_08095"
     CDS             1837..>2122
                     /locus_tag="VGN19_08095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013839607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7195886.1"
                     /translation="MSTQAEDSSPSPADDVDHIVAAWRRERPDLDVGPLHVFSRVSRL
                     ARRLDLDRAQAFARHQLEGWEFDVLSALRRAGSPYELSPGSLVRQTLVTSG"
BASE COUNT          357 a          762 c          687 g          316 t
ORIGIN      
        1 ccacatggtc ggcgaccgcc cctggcaggc ccagggccgc gccaccaacg tgtggccgct
       61 ggcgatcctg tcgatgggcg agtcctggca caacctgcac cacgccgacc cgacctgcgc
      121 tcgccacggt gtcgagccgg gtcaggtcga ctccagcgcc cgcgtcatct gggtcttcga
      181 gaggctgggt tgggcccggg acgttcgctg gcccacggcg aagcgtctcg acgcccgtcg
      241 tatcgccgcc tgagatccga gggcacgatt cggaccgtcg cggttggccc cgggcgccga
      301 acgggcccgt tgcggacccg acaggcatga tgggccgtgt gaccgacgcc cccgagaagc
      361 cgaccaccac gagttcccgc gcccggatga ccggcaagca gcgccgtgag cagcccatcc
      421 acgtcggccg gaaactgttt gccgacaagg gttttgaatg caccagtgtc gaggagatcg
      481 cgtccaaggc gagcgtctcc aagccagtcg tctatgaaca tttcgggggc aaggaagggt
      541 tgtatgccgt tgtcgtcgac cgcgagatcg cggccctgct cggaggtatc accggcgccc
      601 tgagcgccga gctcggcagc cggcagacct tggagcgagc tgcgagtgct ctgctggact
      661 acatcgagac caacaccgac gggtttcgga tcctggtgcg ggacagcccc gccggccagt
      721 cgaccgggtc gttcgccagc ctgatctccg atgtcgccag ccaggtcgaa cacatcctcg
      781 ccgccgagtt caagcgccgg aagctcgacc cgaaaacggc gccgctctat gcccagatgc
      841 tggtcggcat ggtggccttg actgggcagt ggtggctgga ctcacgcaag atgaagaagg
      901 cagacgtggc tgcccacctg gtcaacctcg cctggaacgg tctggccggc ctggagaaga
      961 accccgcgct cagcggcgct cactaggggg cgtgccccac ggcgaagatc cgtcgaaacg
     1021 gaaacaccac gcccgcttct gtgcgcgggt atgccgcgcg aagccgcacg tcgtactcct
     1081 cgaggaacgc agcccgctcg ccttcgtcgg tcaaggcttg gagcaccggc cgcagccccg
     1141 tcccgctaac ccactccagc accggattcg actgtcgccc aaggggatcc aggatgtgct
     1201 gatacgtcgt ctcccagcag tccacgacaa gcccggcgcc ccccaacagc tcgacgtagg
     1261 cggcgggcat cgcgacggcc agacgatcca acgccggacg cagccgttcc gcggccggat
     1321 gctcctgggc gaccaggcgc atgagggcgt gcgatggagc gtcgaggttg cccggcacct
     1381 gcatggccag ccagccgccc ggagccaacg cggccgccca tcgggcgagc aggccgaggt
     1441 ggcccggcac ccactgcagg gtggcgttgc tgacgatgac gtagggcgcc gagcccagaa
     1501 agcccaggtc cagtccggcc acgtcggcct caacccactc gacccgcccc gcaggatcgg
     1561 catcgcgcgc cgcctcgagc atctggggcg actggtccac tccgacaatg cgcgcctggg
     1621 gccagcgttc cgccagcgac agcgtgagcg gtccgttgcc acagccgaga tcgaccacca
     1681 ggtcggggtg ctcggcaccc acccgagcca tcaagtcacg gaagggtcgt gagcgttcgt
     1741 cggcgaacgc ggcatactgc ctcgggtccc agctcgtgct cacgaatgct ccttatcttg
     1801 atatcaagat acttgacgga aggtacactc acccgcatga gcacgcaagc ggaggactcc
     1861 tcaccctccc ccgcggacga tgtcgaccac atcgtcgctg cctggcgtcg cgaacgccct
     1921 gatctcgacg tcggcccgct ccacgtcttc tcccgagtgt cccgtctggc ccgacgcctg
     1981 gacctcgacc gggcccaagc ctttgcgcgc caccagctcg agggttggga gttcgacgtg
     2041 ttgtccgcgc ttcgtcgcgc gggttcgccc tacgagctct cccccggcag cctggtccga
     2101 cagaccctgg tcaccagcgg ca
//
LOCUS       DASYFY010000407         2254 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_186020, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000407 DASYFY010000000
VERSION     DASYFY010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186020"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..959)
                     /locus_tag="VGN19_08100"
     CDS             complement(<1..959)
                     /locus_tag="VGN19_08100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HEV7195887.1"
                     /translation="MHHDPSDPFVHVRGASEHNLKNIDVDVPRDAMVAFTGVSGSGKS
                     SLAFGTLYAEAQRRYFESVAPYARRLLQQVGAPHVQEITGLPPAVALQQRRGAPSSRS
                     SVGTLTTLSNLVRMLYSRAGTYPDGASRLEAEAFSPNTAAGACPRCHGLGEEHDVSEE
                     LMVPDTSLTIREGAIAAWPGAWQGVNLRSIVSGLGIDVDTPWRKLKKKDRDWLLFTDE
                     QPKVLIKPERDRIDYGYHGLFWSARAHVHHVLATSKSQMMRDKAMRFVRSVPCPDCHG
                     TGLRADALEVTFAGRSIAQTNALSFTELVTVLRPVAGLTEAGAA"
     gene            complement(1044..1676)
                     /locus_tag="VGN19_08105"
     CDS             complement(1044..1676)
                     /locus_tag="VGN19_08105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7195888.1"
                     /translation="MSRTRIHNFSISLDGFATGEPQSADAPFGHAGRRLHEWMMKTRF
                     WGAGGTTGVDDAFAERHSPGIGAEIMGANKFGPPGWRDDPDWKGWWGPNPPFHTPTFV
                     LTHHPQPSIEMEGGTTFHFLDASPAEALETAREAADGLDVRIGGGPTVVRDFLTAGLV
                     DHMHLAQVPIVLGRGVRLWDGLEALEDAYDVEVVPSPSGVTHLTFTRKFS"
     gene            complement(1792..>2254)
                     /locus_tag="VGN19_08110"
     CDS             complement(1792..>2254)
                     /locus_tag="VGN19_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195889.1"
                     /translation="YQQVATSAGVPLRMVTGVTPDPADAHSAFVLFGGYSRNWVDGPG
                     SDLAGSGHLWKVTLTGGIDSAGQATATWTDVSGNLPDIPGDHLLISSTGRVVMATDLG
                     VVETTLASLRTGSPRWSRDAIPVTIATQAVEGPDGKLYVATYGRGIYRTTT"
BASE COUNT          329 a          730 c          847 g          348 t
ORIGIN      
        1 gccgcgcccg cctcggtcag cccggcgacc ggacggagca ccgtcaccag ctcggtgaac
       61 gacagggcgt tggtctgcgc gatggaccgg cccgcgaagg tgacctcgag cgcgtccgcc
      121 cgcaggccgg tgccgtggca gtcagggcaa gggacgctgc gcacgaagcg catcgccttg
      181 tcgcgcatca tctggctctt ggacgtggca aggacgtggt ggacgtgcgc gcgagcgctc
      241 cagaagagcc cgtggtagcc gtagtcgatg cggtcgcgct ccggcttgat gagcaccttg
      301 ggctgctcgt cggtgaagag gagccagtcg cggtccttct tcttgagctt gcgccacggg
      361 gtgtcgacgt cgatgcccag ccccgacacg atgctgcgca ggttgacgcc ctgccaggca
      421 ccgggccacg cggcgatcgc gccctcgcgg atcgtcagcg aggtgtccgg gaccatcagc
      481 tcctcgctga cgtcgtgctc ctcaccgagc ccgtggcagc gcgggcaggc gccggccgcg
      541 gtgttcggcg agaacgcctc cgcctccagc cgggacgcac cgtccggata ggtgccggcg
      601 cgcgagtaga gcatgcgcac gaggttggac agcgtggtca acgtgccgac gctggagcgt
      661 gagctcgggg ctccacgccg ctgctggagc gccacggccg gcggcaggcc ggtgatctcc
      721 tgcacgtgcg gtgcgccgac ctgctgcagg agccgacgcg cgtagggcgc caccgactcg
      781 aagtagcgac gctgcgcctc ggcgtagagg gtgccgaagg ccagcgagga cttgcccgag
      841 ccggacacgc cggtgaaggc caccatggcg tcacgtggca cgtcgacgtc gatgttcttg
      901 aggttgtgct cgctggctcc gcgaacatgg acgaaggggt cgctcgggtc gtggtgcaca
      961 cctctgtcta gccgctcgcg cgttgcggca caccatcggg tgcccggatc agccgagtcg
     1021 gcccgggtgt cggcccgtgc ggttcacgaa aacttgcgcg tgaaggtgag gtgggtgacg
     1081 ccgctggggg acgggaccac ctccacgtcg taggcgtcct cgagggcctc gagaccgtcc
     1141 cagagacgga cgccgcggcc gagcacgatc gggacctggg cgagatgcat gtggtccacg
     1201 agcccggcag tgaggaagtc gcgtacgacc gtggggccgc cgccgatccg gacgtcgagg
     1261 ccgtcagctg cttcgcgggc agtctcgagc gcctcggccg gtgaggcgtc gaggaagtgg
     1321 aacgtggtgc cgccctccat ctcgatcgag ggttggggat ggtgcgtgag cacgaaggtc
     1381 ggtgtgtgga acggcgggtt cgggccccac cagcccttcc agtccgggtc gtcccgccat
     1441 ccgggcgggc cgaacttgtt ggcgcccatg atctcggcgc cgatgccggg actgtggcgc
     1501 tcggcgaagg cgtcgtccac tccggtggtt ccgccggcgc cccagaaccg ggtcttcatc
     1561 atccactcgt gcagacgccg gcccgcatgg ccgaagggtg catcggcgga ctgtggctcg
     1621 ccggtggcga atccatcgag agagatggag aagttgtgga tccgcgtgcg tgacatccga
     1681 gctctcctcg gtggggtgat tcgctgtgca ttcggttcca ggaagaacaa ccagggcgag
     1741 cggcgcgtgc gggtgaggcg ggggacccac ctcacccgca ggcggcggtc gtcacgtcgt
     1801 ggtgcggtag atcccacgtc cgtaggtcgc gacgtagagc ttgccgtccg gtccctccac
     1861 cgcctgggtg gcgatggtga ccgggatggc gtcacgcgac caccggggag agccggtgcg
     1921 cagcgacgcg agcgtcgtct ccacgacccc caggtcggtg gccatgacca cccgccctgt
     1981 tgacgagatg agcaggtggt cgcccggtat gtcagggagg ttgccgctga cgtcggtcca
     2041 ggtggccgtt gcctggcctg cggaatcgat cccgccggtg agggtgacct tccacagatg
     2101 gccggagcca gcgaggtcac tgccgggccc gtcgacccag ttgcgggagt agccaccgaa
     2161 caggacgaag gcgctgtgcg cgtcggcagg gtccggcgtg acgcccgtga ccatgcgcag
     2221 ggggactccg gccgacgtgg ccacctgctg gtag
//
LOCUS       DASYFY010000408         2050 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1815795, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000408 DASYFY010000000
VERSION     DASYFY010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1815795"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VGN19_08115"
     CDS             <1..322
                     /locus_tag="VGN19_08115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195890.1"
                     /translation="SDWFRRSGKSLSSSAAPAAGQAWNSPADEGWRAARMAAAPEAGE
                     TTTAGLPKRVPRANLVPGSVGGGEGTEVAPPARSADLIRTRMASFQRGVREARASAPQ
                     NEEP"
     gene            399..836
                     /locus_tag="VGN19_08120"
     CDS             399..836
                     /locus_tag="VGN19_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005311457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HEV7195891.1"
                     /translation="MSTPGRPVQDLSWLITNFVERVPDVAHAVVVSSDGLPLAFSSGF
                     PQERADQLAAVTSGLTSLTQGASRVFEGGAVVQTVVEMQRGVLVIMAISNGASLAVLA
                     ASTCDLGLVAYEMTLLVERAGRVLTPAARGGVMQGAMPGDGRR"
     gene            870..1355
                     /locus_tag="VGN19_08125"
     CDS             870..1355
                     /locus_tag="VGN19_08125"
                     /inference="COORDINATES: protein motif:HMM:NF017170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF742 domain-containing protein"
                     /protein_id="HEV7195892.1"
                     /translation="MSGLGRGGDDRGSPAWQGPNRAGPWDEPQPQRQPFPPSQQPSFP
                     AEEESGSTRLVRPYTVTGGRTQPRYKLALEALVSATVYEPRDLSVLAPECQAILQFCL
                     DWRSVAEISAVLRMPLGVARILVADMSADGLVRVHQRDDSEGRPDLNLLERVLSGLRK
                     I"
     gene            1393..1944
                     /locus_tag="VGN19_08130"
     CDS             1393..1944
                     /locus_tag="VGN19_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015770577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HEV7195893.1"
                     /translation="MTSVKIVVAGGFGVGKTTFVGSVSEITPLTTEAVMTVASTDVDD
                     LSHVPDKNTTTVAMDFGRITLEKDLVLYMFGTPGQHRFWFMWDDLIQGAIGAVVLVDT
                     RRLADSFPAVDYFEASGLPFVIGINGFHGQFPHRSNDVREALAIPSTVPIIPCDARNR
                     ESTKATLVTLVEHAMSMQTAGRY"
BASE COUNT          324 a          675 c          730 g          321 t
ORIGIN      
        1 gtcggactgg ttccggcgca gcggcaagtc gctgagttct agcgcggctc cggccgcggg
       61 ccaggcctgg aactcgccgg cggacgaagg atggcgcgcc gcgcgaatgg ccgcggcacc
      121 agaggcggga gagaccacga cggccgggct gccaaagcgc gtgccgcggg ctaacctcgt
      181 gcccggatcg gtcggtgggg gcgaaggcac ggaagtcgcg ccgccagccc ggtctgcgga
      241 cctgatccgc acccggatgg cgagtttcca gcgtggtgtg cgcgaggcgc gggcgtccgc
      301 accccagaac gaggagccat aagacggatg agacccacgc atagagatct cggaacacga
      361 ggaggagcct gtatgagcgg gcgaggagag gagcgcgcgt gagcacgcca ggacgcccgg
      421 tccaggacct cagctggctg atcacgaact tcgtggagcg ggtcccggac gttgcccatg
      481 cggttgtcgt gtcctcggac ggactgccgc tcgccttctc ctcggggttc ccccaggagc
      541 gtgcggacca gctcgcggcc gtgacatcag gcctgaccag ccttacccag ggtgcttccc
      601 gggtcttcga aggcggcgcg gtcgtccaga ccgtggtgga gatgcagcgc ggtgtgctcg
      661 tcatcatggc gataagcaat ggtgccagcc tcgccgtgct cgcggcctcc acctgcgatc
      721 tgggactcgt cgcttacgag atgacgctgc tcgtcgagcg ggcgggccgg gttctcacgc
      781 ccgccgcgcg cggtggtgtc atgcaaggcg ccatgccggg agacggaagg cgatgatgag
      841 cacaagtggc tccatctttg ggggatgtgg tgtcggggct cggccgcggc ggtgacgacc
      901 gcggttcgcc cgcgtggcag ggccctaacc gggccgggcc atgggacgag ccgcagccgc
      961 agcgccagcc gtttcccccg agccaacagc cgtccttccc tgccgaggag gagagcggct
     1021 caacacggct agtccgcccg tacaccgtga cgggcggccg gacgcagccg aggtacaagc
     1081 tcgcgctcga ggccttggtg agcgcgaccg tctacgagcc acgcgatctg tccgtgctgg
     1141 cacccgagtg ccaggcaatc ctgcagttct gccttgactg gcgttctgtc gcagagatct
     1201 cagcagtgct caggatgccc ctcggtgtcg ctcggatcct ggtcgcggac atgagcgcgg
     1261 acggcctcgt acgcgttcac cagcgtgacg actccgaggg ccgtccggac cttaacctgc
     1321 tcgaaagggt gctaagtgga ctccgtaaga tctagcgtcg cccgccaggg cggaggtggc
     1381 gacgcttcgg cgatgacgtc ggtgaagatc gtcgttgctg gtggctttgg cgtggggaag
     1441 acgacgttcg tcgggtcggt gtcggaaatc accccgctga ccaccgaggc ggtcatgacc
     1501 gtcgcgtcca ccgacgtcga cgacctctca cacgttcccg acaagaacac caccacggtg
     1561 gcgatggact tcggccggat cacgctggag aaggacctgg tgctctacat gttcggcacg
     1621 cccggacagc accggttctg gttcatgtgg gacgacctga tccagggtgc gatcggcgcg
     1681 gtagtgctcg tcgacacccg gcggctggcc gactccttcc ccgcggtcga ctacttcgag
     1741 gcgagcggcc tgccgttcgt catcggcatc aacgggttcc acggccagtt cccgcaccgg
     1801 tctaacgacg tgcgcgaggc cctcgcgatc ccgtcaaccg tcccgatcat cccgtgcgac
     1861 gcgcgtaacc gcgagtcgac caaggccacg ctggtgaccc tggtggagca cgcgatgtcg
     1921 atgcagacgg ccggccggta ctgagccggt agacctgtct tacccgccgt gcggcggcgg
     1981 gcccccggtg gcggagacgc caccggtccg gacgaacgaa ggcggggccc ggccaggccc
     2041 cgcctggttt
//
LOCUS       DASYFY010000409         2853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_343308, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000409 DASYFY010000000
VERSION     DASYFY010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343308"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VGN19_08135"
     CDS             complement(<1..754)
                     /locus_tag="VGN19_08135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195894.1"
                     /translation="MTQTRGPRPGDRRPRPSSAPTPPTAGRTAPRADTRTKAPTSKVS
                     ASKAGHGMAPSAKAGRPASRGTGAARPKAGAGSGSPRPGGSSRNPVGREVRLDAASPR
                     RRMRAMTVVVLFVFSIFAAQLLRLQGFDASAVSADATSQRTATVALPAMRGSIVDSRG
                     TILASSIERRTVTVDQTAVPSYVATVNGVRVKVGVDGAAKALSPLLGVPVDLLVGDLT
                     GKARYRVLQKNVTPLTWRKISELGVNGIYSEVT"
     gene            complement(804..1487)
                     /locus_tag="VGN19_08140"
     CDS             complement(804..1487)
                     /locus_tag="VGN19_08140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195895.1"
                     /translation="MSQQTATARVAFRAPQRRQTATPQELRVVPAAIGQPGNGLFAAA
                     CLVLLIAGLVSLLMLNTAMAEGSFTLNGLQKTSGELTDTQDALTQTLDAQRSPANLAA
                     RATHLGMVPADSAAFLRLSDGKVLGVASAAKAGSGFTVVTAPQTPSKAPAAVTVAPQP
                     QGPKATVTSKGDVTTTTVVEAKPDGSVVTTVTSVNAKTKATTSTTITQPAPAATPAGS
                     PQGTPTKTH"
     gene            complement(1484..2473)
                     /gene="rsmH"
                     /locus_tag="VGN19_08145"
     CDS             complement(1484..2473)
                     /gene="rsmH"
                     /locus_tag="VGN19_08145"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEV7195896.1"
                     /translation="MNARGMAAERHTPVLRDRIVELLAPALDAPGAVYVDGTLGMGGH
                     AEAILSACPHARLVGVDRDTEALALATERLAAYADRTDFVHAVYDEVPEALAGLGLDR
                     MDAALFDLGVSSLQLDETDRGFSYSQDAPLDMRMDQGSGLTAADVLNTYEAADLERVI
                     REYGEERFARKIAGAIVRERESAPFTTSARLVELLKRAVPASSQKSGGHPGKRTFQAL
                     RIEVNAELSVWARALPRAVDLLGVGGRIAVLSYHSLEDRITKRVLGEGARSSSPEGLP
                     VELPEHAAYLRLLTRGAEEASAEEQHANPRSASVRLRAAERIRLTTPTKGPHR"
     gene            complement(2649..>2853)
                     /locus_tag="VGN19_08150"
     CDS             complement(2649..>2853)
                     /locus_tag="VGN19_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEV7195897.1"
                     /translation="SDEVPDKQGRVTIPANLRAYAGLTRECTVIGAGSRVEVWDTDAW
                     NAYLESTEQGFADQSEEVIPGLL"
BASE COUNT          366 a          941 c         1075 g          471 t
ORIGIN      
        1 acgtgacctc cgagtagatg ccgttgaccc cgagctcgct gatcttgcgc caggtgagcg
       61 gggtgacgtt cttctgtagg acccggtagc gggccttgcc cgtcagatcg ccgaccagca
      121 ggtccaccgg gacaccgagc agcggcgaga gcgccttggc cgcgccatcc acgccgacct
      181 tgacgcgcac cccgttcacg gtggccacat acgacgggac cgccgtctgg tccacggtca
      241 cggtgcggcg ctcgatgctc gaggccagga tcgtgccgcg actgtccacg atggagccgc
      301 gcatcgcggg cagcgccacg gttgcggtgc gctgggacgt cgcgtccgcg gacaccgcgg
      361 acgcgtcgaa accctggagg cgcagcagct gggcggcgaa gatgctgaag acgaacagca
      421 cgacgacggt catggcgcgc atccgccgtc gtgggctggc cgcgtcgagc cggacctcac
      481 gcccgaccgg atttcgcgac gagccgccgg gccggggaga gccagacccc gcgccggcct
      541 tgggtcgcgc tgcgccggtc cccctgcttg ccgggcgccc ggccttggcg ctgggtgcca
      601 tgccgtggcc agccttgctg gcggagacct tgctggtcgg agccttggta cgggtgtcgg
      661 cacgaggcgc ggtccggccg gccgttggtg gggtgggcgc gctggaaggg cgaggtcgcc
      721 ggtcaccggg gcgggggcct cgggtctgcg tcacgtctac ctcgtgtctg gtgcgggtcg
      781 gtcagctgtc gttcggtggt cggtcagtgg gtcttggtcg gcgtgccctg cgggctaccc
      841 gccggggttg cggccggcgc tggctgggtg atggtggtgc tggtcgtggc cttggtcttg
      901 gcgttgacgc tggtcacggt cgtcaccacc gacccgtcgg gcttggcctc gacgaccgtc
      961 gtcgtcgtga cgtcgccctt gctggtgacg gtggccttgg gaccttgcgg ctggggtgcg
     1021 acggtcacgg ccgccggcgc cttcgacggg gtctgcgggg ccgtcaccac ggtaaagccg
     1081 ctgcctgcct tggccgccga cgccacgccg aggacctttc cgtcggacag ccgcaggaag
     1141 gccgccgagt cagccggcac catccccagg tgcgtggccc gggccgcgag gttggcgggg
     1201 ctgcgctgtg cgtccagcgt ctgggtcagg gcgtcctgcg tgtcggtcag ctcgccggag
     1261 gtcttctgga ggccgttgag ggtgaaggaa ccctcggcca tcgcggtgtt gagcatcagc
     1321 agcgagacca ggccggcaat cagcagcacg aggcacgcgg ccgcgaacag gccgtttcca
     1381 ggctggccga tggccgcggg gaccacccga agctcctggg gcgtcgcggt ctgacgtcgt
     1441 tgtggcgccc ggaatgcgac cctcgccgtc gcagtctgct ggctcatcgg tgcggtccct
     1501 tcgtgggtgt ggtgagacgg atgcgctcgg cggctcgcag gcgcaccgaa gcggaacggg
     1561 ggttggcgtg ctgctcctcg gcgctggcct cttcggcgcc tcgggtcagc agccgcaggt
     1621 atgccgcgtg ctcgggaagc tccacgggga gcccttcggg cgagctgctg cgggcgccct
     1681 cgcccaggac ccgcttggtg atgcggtcct cgagcgagtg gtaggacagg acggcgatcc
     1741 gaccgcccac cccgagcagg tcgactgccc tcggcagagc gcgtgcccag accgacagct
     1801 cggcgttgac ctcgatgcgc agggcctgga aggtccgctt gccgggatgg ccaccgctct
     1861 tctgggagga agcgggaaca gctcgcttga gcagttccac caggcgcgcc gaggtggtga
     1921 acggggcgga ctcgcgctcc cggacgatgg cgccggcgat ctttcgcgcg aaacgctcct
     1981 cgccgtactc gcgaatcacc cgttcgaggt cggctgcctc gtaggtgttg agtacgtcgg
     2041 cggcggtgag gccgctgccc tggtccatac gcatgtccag cggggcatcc tggctgtacg
     2101 agaagcctcg gtccgtctcg tcgagctgca gggacgacac ccccaggtcg aacagggccg
     2161 cgtccatccg gtcaagcccg agtccggcca gcgcctcggg cacctcgtcg tagaccgcgt
     2221 ggacgaagtc tgtgcggtcc gcgtaggcgg cgagccgctc ggtggccagt gcgagtgcct
     2281 cggtgtcacg gtcgacgccg accaggcggg cgtgcgggca ggcgctcagg atggcctccg
     2341 cgtgaccgcc catgccgagg gtgccgtcga cataaaccgc gccaggcgcg tccagagcgg
     2401 gtgccagcag ctcgacgatg cggtcgcgaa gaacgggggt atgccgctcg gcggccatcc
     2461 ctcgtgcgtt catcgcgggc tctttctgct ggtgatctgg tgctgagctc ttggcctgtg
     2521 ccctgcggtc aggtctccat ccgctccaag ggatgcggcc cgagacgggg gaagtcgtct
     2581 cgggatgcga agcggctgga gacctggcgg cagggcttga ggtggactgg ttggctggtg
     2641 aatggtcgtc agagcaatcc ggggatgacc tcctccgact ggtcggcgaa gccctgctcg
     2701 gtggattcca ggtaggcgtt ccacgcgtcg gtgtcccaga cctccacccg cgaaccggca
     2761 ccgatcacgg tgcactcgcg ggtcaggccg gcatacgccc ggaggttcgc cggaatcgtg
     2821 actcggccct gcttgtccgg cacctcgtca gag
//
LOCUS       DASYFY010000410         1804 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_291466, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000410 DASYFY010000000
VERSION     DASYFY010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291466"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VGN19_08155"
     CDS             <1..185
                     /locus_tag="VGN19_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018192362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HEV7195898.1"
                     /translation="LRRKGFREVTAALWSRGVIPDYRDPDGLRIGVSPLSTSFAEVAR
                     GMLALRDAVVEYDATA"
     gene            196..795
                     /locus_tag="VGN19_08160"
     CDS             196..795
                     /locus_tag="VGN19_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEV7195899.1"
                     /translation="MSRALVIVDVQNDFCEGGSLAVTGGAEVARRISAHVAAHGEEYA
                     AIVATADWHDDPGAHFSDHPDFVASWPAHCRAGSDGALFHPAAEPAFKQVQAIFRKGH
                     HSAAYSGFEGFTVEGDRTVLLADWLRDRAIEEVDVVGIATDHCVRATALDAADEGFDT
                     TVLLDLTAGVAPQTTAAALQELARAQVGLRGEVPAASPG"
     gene            complement(792..>1804)
                     /locus_tag="VGN19_08165"
     CDS             complement(792..>1804)
                     /locus_tag="VGN19_08165"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004411 - homogentisate 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006570 - tyrosine metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase domain-containing
                     protein"
                     /protein_id="HEV7195900.1"
                     /translation="ATDVVTGRRLVLGNADVRISYAVAGAPSPWYRNGIGDECVYVER
                     GKARVETVFGAFDVAEGDYLVIPRATTHRWIPQRSAKNPLRAYCIEANSHITPAKRYL
                     SKYGQLLEHAPYCERDLRGPSGPLLAEDVGARAGDESEVYLKHRGNGPASSGGIVGTI
                     HTLPFHPLDVVGWDGCLYPYAFNVKDFEPITGRVHQPPPVHQVFEAWNFVICNFVPRK
                     VDYHPLSIPVPYYHSNVDSDEIMFYVDGDYEARKGSGIGKGSISVHPGGHAHGPQPGA
                     SEASIGVEYFDELAVMVDTFRPLELGEAGRAVDDGRYARSWSRTGGGQSGSEAGGDYS
                     IG"
BASE COUNT          273 a          641 c          602 g          288 t
ORIGIN      
        1 cgttgcggcg caagggattc cgcgaggtca cggccgccct gtggtctcgc ggcgtgatcc
       61 ccgactatcg cgacccggac gggctgagga tcggtgtctc cccactgagc accagcttcg
      121 cggaggtggc gcgagggatg ctcgcgctgc gcgatgccgt cgtggagtac gacgccacgg
      181 cgtagcgtca tgctcatgag ccgcgccctg gtcatcgtcg acgtgcagaa cgacttctgt
      241 gagggcggca gccttgccgt caccggaggc gccgaggtgg ctcgccggat cagtgcgcac
      301 gtcgccgccc acggcgagga gtatgccgcc atcgtcgcga cggctgactg gcacgatgat
      361 ccgggcgccc acttcagcga ccatccggac ttcgtcgcct cctggcccgc ccactgccgc
      421 gcaggcagcg acggcgccct gttccacccg gcggccgaac cggcgttcaa gcaggtccag
      481 gccatcttcc gcaagggcca ccacagtgcc gcctacagcg ggttcgaggg cttcaccgtc
      541 gagggcgacc gcacagtgct gcttgccgac tggttgcgtg accgggcgat cgaagaggtc
      601 gacgtcgtcg gcatcgcgac cgaccactgt gtgcgggcca ccgccctcga cgccgcggac
      661 gagggcttcg acaccactgt tctgctcgat ctcaccgcgg gagtcgcgcc gcagaccact
      721 gccgcggcgc tgcaggagct ggcgcgggcc caggtgggcc tgcgcggcga ggtccctgct
      781 gcttcgcccg gctagccaat gctgtagtcg ccgccggcct cagaaccgct ctgcccgccg
      841 ccggttctgc tccacgacct ggcgtaccgg ccgtcgtcga ccgcccgccc ggcctccccg
      901 agctccagcg ggcggaaggt gtcgaccatg acggccagct cgtcgaagta ctccacgccg
      961 atggatgcct cactggcccc gggctgcggg ccgtgagcgt ggccaccagg atgcaccgag
     1021 atcgacccct tgccgatccc cgagcccttg cgcgcctcgt agtcaccgtc gacgtagaac
     1081 atgatctcgt cgctgtcgac attggagtgg tagtacggga cggggatcga cagcgggtgg
     1141 tagtcgacct tgcgcggcac gaagttgcag atcacgaagt tccacgcctc gaagacctgg
     1201 tgcaccggag gtggctgatg gacccggccc gtgatcggct cgaagtcctt gacgttgaag
     1261 gcatacggat acaggcagcc gtcccagccc accacgtcga gggggtggaa aggcagggtg
     1321 tggatcgtgc ccacgatgcc gccactactc gcgggtccgt tgccgcggtg cttgaggtag
     1381 acctcggact cgtcgccggc ccgagcaccc acgtcttcgg ccaacagtgg gccagacggt
     1441 ccgcgcaggt cccgttcgca gtacggcgca tgctccagca gctgcccgta cttcgacagg
     1501 taccgcttgg ccggcgtgat gtggctgttc gcctcgatgc agtaggcgcg caacgggttc
     1561 ttggccgaac gctgcgggat ccagcggtgg gtggtcgccc tcgggatgac caggtagtcc
     1621 ccctcggcga cgtcgaaggc cccgaacacc gtctcgaccc gcgccttccc ccgttcgaca
     1681 tacacacact cgtcgccgat cccgttgcgg taccacggac tcggcgcgcc cgccacggca
     1741 tacgagatgc gcacgtcagc attgcccagc accagacgcc gcccggtcac gacgtcggtc
     1801 gcct
//
LOCUS       DASYFY010000411         5057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_659246, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000411 DASYFY010000000
VERSION     DASYFY010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5057
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659246"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            315..686
                     /locus_tag="VGN19_08170"
     CDS             315..686
                     /locus_tag="VGN19_08170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1844 domain-containing protein"
                     /protein_id="HEV7195901.1"
                     /translation="MSTEFPNPQTNTDVSQQATRDIAEVPAVEVITTAAIHLMSAAAV
                     KCGLADGPDATDHLDLDEARRLITALAGLVTASAPDLGSQHAAPLRDGLKSLQLAFRE
                     ASVVPDAPGQGPGEKLTGSVV"
     gene            complement(647..2029)
                     /locus_tag="VGN19_08175"
     CDS             complement(647..2029)
                     /locus_tag="VGN19_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195902.1"
                     /translation="MLNAGSRYRRVLTRAALRRAIVLGFLVRLPIFAGGVVLTLHVVS
                     SLHRSYAAAGLASAAATLAIAVSGPWRGKLLDRMGLRRVVVPSIVVAAGCWSVAPFVA
                     YWWLLALAALAGLFVIPTFSIIRQAVIAAVPEDDRRTAISLDSVAVELSFMIGPAAGV
                     WAATVWPTRWVLFSIEMLGVAAGVLLWLANPALHDEAPEPLPDGTAKPTHHGPAGRID
                     DEGTPVGDVTPVPRSSWFRAGFLAVCLGAAAATVVLGGTDLAIVAALRDFHAQSSIGW
                     VLAVWGFGSLLGGLVYGGLGRSISAFWLLGGLAVVTAPMALATGPASLAALSFAAGLC
                     CAPTITATVDQVSRVVPSTARGEAMGWHGSFMTAGMALGAPLAGMAVDQRGWGAGFVV
                     VAVIGVVVAGLGIAATATRGRVAARAQVAQPQVAQPQTTGPQTVEPQTIGPQTIGPQT
                     TEPVSFSPGP"
     gene            complement(2131..2853)
                     /locus_tag="VGN19_08180"
     CDS             complement(2131..2853)
                     /locus_tag="VGN19_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SseB family protein"
                     /protein_id="HEV7195903.1"
                     /translation="MSDARDSAGVPFSGRVLGGTGFDGDDGSADPALTVSLGQPDDEP
                     ALMRAVVAARFLVPIVAEPAEVDTSGELAVEKQTDMAAVTLVASDGTRALPVFSSASA
                     LAAWDPAARPVPVTAARAAQAAVYERCDVMVVDVAGPLTIALRPSMVWALAQERAWVP
                     AHLDPTVRRAVDAAVRDEDAVIAHELGAGAPGEGVLRVSLTLRPGLDTATVQAVATGI
                     GERLATDGEIRARIDGLAFAIR"
     gene            complement(2850..3590)
                     /gene="priA"
                     /locus_tag="VGN19_08185"
     CDS             complement(2850..3590)
                     /gene="priA"
                     /locus_tag="VGN19_08185"
                     /EC_number="5.3.1.16"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     1-(5-phosphoribosyl)-5-((5-
                     phosphoribosylamino)methylideneamino)imidazole-4-
                     carboxamide isomerase/phosphoribosylanthranilate isomerase
                     PriA"
                     /protein_id="HEV7195904.1"
                     /translation="MTTTTARLELLPAVDVQGGQAVQLVQGVAGSGGRFGDPWEAALA
                     WQEQGAEWLHLVDLDAAFGRGSNRELLATIVGRLDLKVELSGGIRNADSLAAALATGC
                     RRVNLGTAALEDPEWTAAAIAEHGDRVAVGLDVRGTTLAARGWTQEGGDLWETLERLD
                     REGCARYVVTDVNKDGMLKGPNLELLREVCERTDRPVVASGGVSTLGDIAMIRELVPL
                     GVEGAIVGSALYRGAFTLPDALDVAGRP"
     gene            complement(3690..4328)
                     /gene="hisH"
                     /locus_tag="VGN19_08190"
     CDS             complement(3690..4328)
                     /gene="hisH"
                     /locus_tag="VGN19_08190"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEV7195905.1"
                     /translation="MSRVVVFDYGSGNVRSAVRALEHVGAEVELTADRRAALAADGLF
                     VPGVGNFHACMAGLKAAQGPLVIETRLAGGRPVLGVCVGMQVLFDGSEEPSETPLGGL
                     GEWPGTVSRLRAEVVPHMGWGTVEPPASSRLFAGVQSERFYFVHSYAVQEWVLEPPSG
                     AFAAVAPRVTWGEHGVRFVAAVENGPLSATQFHPEKSGEAGLALLENWVKSL"
     gene            complement(4328..>5057)
                     /locus_tag="VGN19_08195"
     CDS             complement(4328..>5057)
                     /locus_tag="VGN19_08195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195906.1"
                     /translation="QPLHVSIPRVPRGLLLVSADPARAAAWVRRGLVACYVVPLAGWT
                     AIVPAEPASRAKPPYDDPVTVLASRPVPHRLRPARGFWATGGRAVATVAPRGWRSGLR
                     WLVWQPGEGAVRAPGLRLARIADLSVAAGRPASRAEVGAVVTQRGGDPDTVLVDLMAV
                     LRLPGSGMLSGGLPRGDLRGALRPGNAGSHASSSAGSSADAEASSTGHEDVGFVVEPS
                     LRAVMRFDAQVGEDARHRAELEEL"
BASE COUNT          859 a         1890 c         1696 g          612 t
ORIGIN      
        1 acttcgggaa cccgaatgcg gtcgttgatg cgaggctcgc tgatgttggt gctcctctgc
       61 taggtctagg tccgccgcaa cgaaaagagg ctctccgctg ccgttgcgcg gaaagcctca
      121 cctacgtccc cggggaacac caaggccgcg tatgccgccc gactctcgtc ggcgaccacg
      181 cctcggtgac ctcgaacccg gcgaccgaag tggtcggcgc gggtggaagc aggtgctgct
      241 tcacttgcac accgtgcctg ctgccgggtc accccagaag tcggcacggc cggtcgatct
      301 gcaaggctac cagcgtgagc accgaatttc ccaatccaca gaccaacacc gacgtcagcc
      361 agcaggctac ccgtgacatc gccgaggtgc cggcggtgga ggtcatcacg accgctgcca
      421 tccacctcat gagtgccgcg gcggtgaagt gcgggctggc ggatggacca gacgccacgg
      481 accacctgga cctggacgag gcgcgtcggc tcatcacggc gctggccgga ctggtgacgg
      541 catcggcgcc cgacctcggc agccagcacg ccgcccccct gcgtgacggc ttgaagtcac
      601 tccagctggc atttcgcgag gcctcggtcg tcccggacgc ccctggtcag ggaccgggcg
      661 agaaactcac cggctcggtg gtctgaggcc cgatggtctg aggcccgatg gtctgaggct
      721 cgactgtctg aggcccggtg gtctgaggct gggccacctg aggctgggcc acctgagctc
      781 gggcggccac ccgcccccga gtagccgtcg cggcgatgcc cagacccgcg acgacgacgc
      841 cgatcacggc caccacgaca aacccggcac cccaaccgcg ctggtcgacg gccatcccgg
      901 cgaggggagc gcccagggcc atgcccgccg tcatgaacga cccgtgccag cccatggcct
      961 cgccgcgcgc ggtcgagggc accacccggc tgacctggtc gacggtggcg gtgatggtcg
     1021 gcgcgcagca cagtccggcg gcgaacgaca gggcagccaa gctcgccggg ccagttgcca
     1081 gggccatggg cgcagtgacg acggccaggc caccgagcag ccagaacgcc gagatcgacc
     1141 ggcccagacc gccgtaaacc agacctccca gcagggagcc gaagccccag acggccagca
     1201 cccagccgat ggaggactgc gcatggaagt cgcgcagtgc cgcgacaatc gccaggtcgg
     1261 tcccgccgag aaccaccgtc gccgctgcgg cacccagaca gaccgcgagg aacccagccc
     1321 ggaaccagga tgaccgagga accggcgtga cgtcgccgac cggagtcccc tcgtcgtcga
     1381 tgcgcccagc agggccgtgg tgcgtgggtt tcgcagtccc gtcaggtagg ggctcgggcg
     1441 cctcgtcgtg cagggccggg ttcgcgagcc agagcagcac acccgctgcc acgcccagca
     1501 tctcgatgct gaacagcacc caccgagtcg gccacaccgt cgcggcccag actcccgcgg
     1561 cgggcccgat catgaaggac agctcgaccg ccaccgagtc cagcgagatg gcagtgcggc
     1621 ggtcgtcctc cggaacggcc gcgatcacgg cctgacggat gatggagaag gtggggatga
     1681 cgaacaatcc cgcgagcgcc gccagtgcga gcagccacca gtaggcgaca aacggggcca
     1741 ccgaccagca gcccgcggcg accacgatcg atggcacgac gacgcgcctg aggcccattc
     1801 ggtcaagaag cttcccccgc caggggccac tgacggcgat ggccagcgtc gccgccgcgg
     1861 aggccaggcc agcggcggca tacgaccggt ggagcgagga caccacgtgc agggtgagca
     1921 cgacgccacc ggcgaagatg ggcaaccgga ccaggaaccc gagcacgatg gcgcgccgaa
     1981 gagcggcgcg ggtcaggacg cgtcgatacc gggaacctgc gttgagcaca cgaccactct
     2041 gacagcgggc actgacatca gccaaaccct tattgccggt gtccgccggc ccactgtcgc
     2101 tgccaggcag ccgggccagg agaaccgctc ctagcggatc gcgaaggcca gcccgtcgat
     2161 cctcgcgcgg atctcaccat cggtcgccaa gcgctcaccg atcccggtgg ccacggcctg
     2221 gaccgtggcc gtatccaggc ctggccggag agtcagcgat acgcgcagca cgccctcacc
     2281 gggagctccc gcccccagct catgggcgat gacggcgtcc tcgtcgcgca ccgcggcgtc
     2341 cacggcgcga cggaccgtcg ggtccagatg ggcggggacc cacgcgcgct cctgggccag
     2401 cgcccacacc atgctcggtc ggagggcgat ggtcagcggc cccgctacgt cgaccaccat
     2461 cacgtcgcaa cgctcgtaga ccgctgcctg ggcggcgcgg gccgccgtga ctggaacggg
     2521 tcgggcggcc ggatcccagg cggccagcgc ggacgccgac gagaacaccg gcaaggcgcg
     2581 ggtgccgtcc gaggccacga gggtcaccgc cgccatatcg gtctgcttct ccacggccag
     2641 ctcgccggag gtgtccacct cggccggctc cgcgacgatg gggaccaaga accgcgcggc
     2701 caccacggcc cgcatcaagg ccggctcgtc atccggctgc cccagcgaca cggtgagggc
     2761 ggggtccgcc gagccatcgt ccccgtcgaa gcccgtcccg cccaggaccc ggccgctgaa
     2821 cgggacgccg gctgagtccc gtgcatcgct cacggtcgcc ccgcgacgtc gagagcgtcc
     2881 ggcagggtga aagcaccgcg gtagagggcc gaccccacaa tggcaccttc cacccccaac
     2941 gggacgagct cgcggatcat ggcgatgtcg cccagcgtcg acaccccgcc agaggccacc
     3001 acggggcggt ccgtccgttc gcacacctcc cggagcagct cgaggttggg gcccttgagc
     3061 atgccgtcct tgttgacgtc ggtgacgacg tagcgggcgc acccctcgcg atcgagacgc
     3121 tcgagcgtct cccacaggtc gcccccctcc tgcgtccagc cccgggcggc gagcgtggtg
     3181 cctcggacgt ccaggccgac ggccacacgg tcgccgtgct cggcgatcgc cgcagcggtc
     3241 cactcggggt cctcgagcgc ggcggtcccg agattgaccc gccgacaccc ggtggccagg
     3301 gccgccgcca gggaatcggc attgcgaatg ccgccgctca gctcgacctt gaggtccagc
     3361 cgaccgacga tggtggcgag gagctcccgg ttcgagcctc gaccgaacgc cgcatcgagg
     3421 tccaccaggt ggagccactc tgcgccctgc tcctgccagg cgagggcggc ctcccagggg
     3481 tcaccgaagc gaccgcccga gccggcgact ccctggacca gctggacggc ttgaccaccc
     3541 tggacatcca cggctggcag cagctcgagg cgggcggtgg tggtcgtcat cggatctcct
     3601 gatcggcgtg cggcgtagtc cgtgcgggcg tactcacagc gttgtattca cagcgttgta
     3661 ctcacttcga cctactcagt tcgacctact cacagcgact tcacccagtt ctcgagcagg
     3721 gccaggccgg cctcgcccga cttctcggga tggaactgtg tcgcggacag tgggccgttc
     3781 tccacggccg cgacgaaccg cacgccgtgc tcgccccagg tcacccgggg cgcgacggcg
     3841 gcgaaggccc cggaaggtgg ctccagaacc cactcctgca cggcatacga gtggacgaag
     3901 tagaaccgct cggactgcac gccggcaaag agcctggagc tggctggggg ctcgaccgtg
     3961 ccccagccca tgtgtggcac gacctctgct cgcaaccgac tcacggtccc gggccactct
     4021 cccaagccgc ccaagggtgt ctcgctcggc tcctcagagc catcgaacag cacctgcatg
     4081 ccgacacaca ccccgagcac agggcgtccg cccgccagcc gcgtctcgat gaccaacggg
     4141 ccctgggctg ccttcagtcc cgccatacag gcgtggaagt taccgacgcc gggcacgaac
     4201 agcccgtcgg cggccagcgc ggcgcgacgg tccgcggtca gctcgacctc agcgcccacg
     4261 tgttcgaggg cacgcacggc cgaccgcacg ttgccgctgc catagtcgaa gaccacgacc
     4321 cgcgacatca cagctcctcc agctcggcac gatgccgggc gtcctcgccg acctgggcgt
     4381 cgaacctcat caccgcacgc agcgagggtt cgaccacgaa cccgacgtcc tcgtgcccgg
     4441 tcgagctggc ctcagcgtcg gcgctactgc cggcgctact gctggcgtga ctgccggcgt
     4501 tgccgggacg gagggcgcct cgaaggtcgc cgcgcggcag accgccgctg agcatgccgc
     4561 tgccaggcag cctcaggacc gccatcaggt cgacgagcac cgtatcgggg tcgccgccgc
     4621 gctgggtgac gacagccccc acctcggcgc gcgatgccgg acgccccgcg gccacggaca
     4681 gatcggcgat gcgagccagc cgaagccccg gagctcgaac cgccccctcg cccggttgcc
     4741 agaccagcca tctcaggccc gagcgccagc cgcgaggagc cacggtcgcc actgcacgac
     4801 cgcccgtagc ccagaaaccc cgggccggcc tcaaccggtg tgggaccggc cgtgaggcca
     4861 gcacggtcac cggatcgtca tagggcggct tcgcgcgact cgcgggctcc gcaggcacga
     4921 tcgccgtcca cccggccaag ggcacgacat aacaggccac cagaccacgc cgcacccagg
     4981 cggcggcccg agcggggtca gcgctcacga gaagcagccc gcgcggaacc cgcgggatgc
     5041 tcacgtggag aggctgc
//
LOCUS       DASYFY010000412         4620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1185306, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000412 DASYFY010000000
VERSION     DASYFY010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4620
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185306"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VGN19_08200"
     CDS             <1..388
                     /locus_tag="VGN19_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195907.1"
                     /translation="TLAFLFSAAYARLTRAGMLETMSEDYVRTARAKGLRERDVVVRH
                     GLRAALTPILTIFGLDLGLLLGGAVLTETAFSLDGLGRYAILAIGDEDLPRILGVVLV
                     ASVFVVLANLIVDLLYAVVDPRVRIQ"
     gene            385..1407
                     /locus_tag="VGN19_08205"
     CDS             385..1407
                     /locus_tag="VGN19_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195908.1"
                     /translation="MTDPYLDVRDLHVSFETMDGLVKSVDGLSFQLQRGQTLGIVGES
                     GSGKSVTSLSIMGLHHGGNARITGQILLDGTDLVAASSEQVRLLRGKKMAMIFQDPLS
                     AMHPFYTVGHQIIEAYRVHNKVSTSVARKHAISMLDRVGIPQASSRVDDYPHQFSGGM
                     RQRAMIAMALSCDPDLLIADEPTTALDVTVQAQILDLIRDLQSEFNSAVIIITHDLGV
                     VAELADDIMVMYAGRSMEYASAQDTFEHPQHPYTWGLLGSMPRMDRDRTERLLPIVGS
                     PPSLINVPSGCPFHPRCGFEDRTNGLARTERPPFEETRPGHFVACHLTGEERRRIWET
                     EILPKL"
     gene            1460..2524
                     /locus_tag="VGN19_08210"
     CDS             1460..2524
                     /locus_tag="VGN19_08210"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HEV7195909.1"
                     /translation="MNQPTETTDSTPKPRAEPLLSVSELTKHFPIRRGLLQRQVGAVQ
                     AVDSLTFDVAKGETLSLVGESGCGKTTTGRMLTRLIEPTGGTILFEGRDITHLSTGKM
                     RPLRKDIQMIFQDPYGSLNPRHTVGTIVGAPYRLQKVKTEHGTKRAVQDLLELVGLNP
                     EHYNRYPHEFSGGQRQRIGIARSLALKPKLIVADEPVSALDVSIQAQVINLLEDLQNE
                     FGLTYVVIAHDLSVVRHMSDRVAVMYLGKMVEIADRDSLYARPMHPYTTALLSAVPIP
                     DTGRRTKRERIRLQGDVPSPINPPPACRFHTRCWKAQDICKTQEPPLVALAPGHQVAC
                     HFPENIEAPTQPQSTGSVVG"
     gene            2650..2958
                     /locus_tag="VGN19_08215"
     CDS             2650..2958
                     /locus_tag="VGN19_08215"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEV7195910.1"
                     /translation="MARLLTDEELERQLGDLPDWVRDGATIRASFDAPDFPTAVRLVD
                     DIAAEAEDMGHHPDIDIRWRTTLWALSTHSEGGLTQLDIELAHRISQAAARLGAVRHG
                     "
     gene            2951..3679
                     /locus_tag="VGN19_08220"
     CDS             2951..3679
                     /locus_tag="VGN19_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT family protein"
                     /protein_id="HEV7195911.1"
                     /translation="MAEPTTSETEPHGGEAHSLSIAARLNWLRAGVLGANDGIVSTAG
                     IVIGVAAATTSRSAILTAGVAGLAAGAMSMASGEYVSVSTQRDTEQALLAKERRELHE
                     MPEEELAELTAIYEGKGLSPELASEVAQQLTHHDALGAHAEAELGIDPEALTNPWHAA
                     WASMISFTCGAVLPLVAIMLCPVAARVPVTALAVVVALALTGWTSAELGGAPRWPAVL
                     RNIVGGLVAMGVTYAVGRLVGTRI"
     gene            3844..>4620
                     /locus_tag="VGN19_08225"
     CDS             3844..>4620
                     /locus_tag="VGN19_08225"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HEV7195912.1"
                     /translation="MSLRRTPLRRVLTVLGIGAAMVSGTALAASAITGDQSDGSGHPN
                     VGIIAFYDAGGGRSRCTGTLVSPTVLVTAAHCTDGIVGQTAVKFDALIADTPAQALAP
                     AQDPSVGYTSAELAAQGWLSGQASTDPDYSHLTDKNNWNDVGVVVLDQPVSGITPATI
                     APVGYLDQFTPNVLDKTLFTAVGYGVEMGRAPSGPQKPMPLSYPIERRVADEPGQKLT
                     AQILQVNGNAKDPRGTGGTCFGDSGGPAFSGGYEVSVTSYT"
BASE COUNT          752 a         1686 c         1474 g          708 t
ORIGIN      
        1 caccctggcc ttcctgttct cggccgctta cgcgcgtctc acccgtgctg gcatgctcga
       61 gacgatgagt gaggactacg ttcgcaccgc gcgcgccaag ggcctgcgtg aacgcgacgt
      121 cgtcgtccgg cacgggctcc gtgcggcgct gacaccgatc ctgaccatct tcggtctcga
      181 cctcgggctg ctgttgggcg gcgccgtgct gaccgagacc gcgttcagcc tcgacgggct
      241 cggtcgctac gccatcctgg cgatcggtga cgaggacctg ccccgcatcc tgggagtcgt
      301 gctcgtcgcg tccgtcttcg tcgtcctggc gaacctgatc gtggacctgt tgtatgccgt
      361 cgtcgacccg agagtgcgga tccagtgacc gacccctacc tcgacgtgcg ggacctgcac
      421 gtctccttcg agaccatgga cgggctggtc aagtccgtcg acggcctgtc cttccagcta
      481 cagcgcggcc agacgctcgg catcgtgggc gagtccggct ccggcaagag cgtgacgagc
      541 ctgtcgatca tgggccttca ccacggtggc aacgcccgga tcaccggcca gatcctgctc
      601 gacggcaccg acctcgtggc ggcgtcgtcc gagcaggttc gactgctccg cggcaagaag
      661 atggccatga tcttccagga cccgctctcg gcgatgcacc cgttctacac agtgggccac
      721 cagatcatcg aggcctaccg cgtgcacaac aaggtcagca cgagcgtcgc ccgcaagcac
      781 gccatctcca tgctcgaccg ggtgggtatc ccccaggcca gctcgcgggt ggacgactac
      841 ccccaccagt tctccggcgg gatgcgccaa cgcgcgatga tcgccatggc gctgtcgtgc
      901 gaccccgacc tgctgatcgc ggacgagccg accacggcgc tggatgtgac ggtccaggcc
      961 cagatcctgg acctgatccg cgacctgcag agcgagttca actcggccgt catcatcatc
     1021 acccacgacc tcggcgtcgt tgccgagctg gccgacgaca tcatggtcat gtatgccggg
     1081 cgctccatgg agtatgcatc cgcacaggac accttcgagc acccccagca cccctatacc
     1141 tggggcctgc tgggttcgat gccgcgcatg gaccgcgacc gcaccgagcg gctgctgccg
     1201 atcgtcgggt cgccgcccag cctgatcaac gtcccctccg ggtgtccgtt ccacccacgc
     1261 tgcggattcg aggaccgcac caacggtctg gcccgcaccg aacgtccgcc attcgaggag
     1321 acccgtccgg gtcacttcgt cgcctgccac ctgaccggtg aggaacgccg ccggatctgg
     1381 gagaccgaga tcctgcccaa gctctgagca gcaccgtccc cgccgaaccc tcaccgacct
     1441 gcacgacctg ggagtcctct tgaaccagcc gaccgagacc accgacagca cgccgaagcc
     1501 gcgcgccgaa ccgctgctgt ccgtcagcga gctgaccaag cacttcccga tcaggcgtgg
     1561 gctgctgcag cgccaggtag gcgcggtgca ggctgtcgac agcctgacgt tcgacgtggc
     1621 caagggtgag acgctctccc tcgtcggcga gtccggctgc gggaagacga cgacggggcg
     1681 gatgctgacg cgcctgatcg agcccaccgg cggcacgatc ctgttcgagg gccgggacat
     1741 cacccacctg tccaccggca agatgcgccc gctgcgcaag gacatccaga tgatcttcca
     1801 ggacccgtac gggtccctga acccgcggca taccgtgggc accatcgtgg gagcccccta
     1861 ccgcctgcag aaggtcaaga ccgagcacgg caccaaacga gccgtgcagg atctgctcga
     1921 gctcgtcgga ctaaaccccg agcactacaa ccggtacccc cacgagttct ccggcggcca
     1981 gcggcagcgc atcggcatcg cccgttcgct ggcactcaag cccaagctca tcgtggcgga
     2041 cgagcccgtc tcggccctcg acgtgtcgat ccaggcccag gtgatcaacc tgctggagga
     2101 cctgcagaac gagttcgggc tgacctacgt cgtcatcgcg cacgacctgt ccgtggtgcg
     2161 acacatgtct gaccgagtgg ccgtgatgta cctgggcaag atggtcgaga tcgcagaccg
     2221 tgactcgctg tacgcccgcc cgatgcaccc gtacacgacg gccctgctct cggccgtgcc
     2281 gatcccggac accggccgac gcaccaagcg cgagcggatc cgtctgcagg gtgatgtgcc
     2341 gagcccgatc aacccacctc cggcgtgccg cttccacacg cgatgctgga aggcgcagga
     2401 catctgcaag acgcaggaac ccccgctggt cgccctcgcc ccggggcatc aggtcgcctg
     2461 ccacttcccc gagaacatcg aggcgccgac tcagccgcag tcgacgggca gcgtcgtggg
     2521 ctagcgtcgt cggctagcgc tgagaccgag tctggcttga gactgagacg ggcccgcgcg
     2581 ggcaccgtct cagtcggcgt gagggtcccc ttccatgaca ccgcgccccc ggtttgccag
     2641 agttggacca tggcgaggct gttgacggac gaagagctcg agcgacagct gggcgacctg
     2701 cccgactggg tgcgcgacgg ggccacgatt cgggcgtcgt tcgacgctcc ggacttcccc
     2761 acggcggtgc gcctcgtcga tgacatcgcc gcggaggcag aggacatggg ccaccacccc
     2821 gacatcgaca tccgctggcg cacgacgctg tgggcgctgt cgacccactc cgaaggcggc
     2881 ctgacccagc tcgacatcga gctggctcac cggatctcgc aggccgcggc ccggctggga
     2941 gccgtccgcc atggctgaac cgacgacgtc ggaaaccgag ccccacggcg gcgaggcgca
     3001 ctccctgtcg atcgccgctc ggctgaactg gttgcgcgca ggcgtcctcg gcgccaacga
     3061 cgggatcgtc tcgaccgcgg gcatcgtgat cggcgtagcc gccgcaacca ccagtcgcag
     3121 cgccatcctc accgccggcg tcgccggact ggccgccggc gcgatgagca tggcttcggg
     3181 cgagtacgtc tcggtcagca cgcagcgcga caccgaacag gccctcttgg ccaaggagcg
     3241 gcgcgagctg cacgagatgc ccgaggaaga gctcgccgag ctcacggcga tctacgaggg
     3301 caaagggctg agccccgagc tggcctccga ggtcgcccag cagctcaccc atcacgatgc
     3361 tctcggcgcg cacgcggagg ccgagctggg aatcgacccg gaagccctga ccaacccctg
     3421 gcatgccgcc tgggcctcga tgatcagctt cacctgtggc gcggtgcttc cgctggtcgc
     3481 gatcatgctc tgtccggtgg ccgcgcgggt gccagtcacc gccctcgccg tcgtggtggc
     3541 cctggcgttg accgggtgga ccagcgccga gctgggtggg gcaccccggt ggccggcggt
     3601 cctgcgcaat atcgtcggcg ggctggtggc catgggcgtc acgtatgccg tcgggcggct
     3661 cgtgggcacg cgcatctagg cagtgctcac ggcatgctca cggcatgctc accgcatgct
     3721 catggcgtgc tctagatatt tcgtacggcc ctccgctgaa agcgccactc tcccaggccg
     3781 tggcagctaa cgtttgcccg cgttgacctc cccttgcgct ctcccacccc gactggagtc
     3841 cctatgtcac tgcgccgcac gcccttgcgc cgcgtcctga ccgtcctcgg catcggtgcc
     3901 gccatggtgt cgggcaccgc tctggccgcc agcgccatca ccggcgatca gtcggacggc
     3961 tcaggccacc cgaacgtggg catcatcgcg ttctacgacg caggtggcgg caggtctcgc
     4021 tgcacgggga ccctggtctc ccccaccgtt ctggtgaccg cggcccactg caccgacggc
     4081 atcgtcggtc agacagcggt caagttcgac gcgctcatcg ccgacacccc agcccaggct
     4141 ctggcccccg cgcaggaccc gagcgtcggc tacacgagtg ccgagctggc ggcgcagggc
     4201 tggctcagcg gccaggcgtc cacggacccc gactactccc acctcaccga caagaacaac
     4261 tggaacgacg tcggcgtggt ggtgctcgac cagccggtca gcggaatcac gcccgccacc
     4321 atcgccccgg tgggctacct cgaccagttc accccaaacg tcttggacaa gacgctcttc
     4381 acggctgtgg gctacggcgt tgagatgggc cgggcaccgt ccgggccgca gaagcccatg
     4441 ccgctctcgt acccgatcga gcgccgagtg gccgacgagc cgggccagaa gctgacggcc
     4501 cagatcctcc aggtcaacgg caacgccaaa gacccgcgcg gcaccggcgg cacgtgtttc
     4561 ggggactccg gtggcccggc gttcagcggc ggttacgagg tgagcgtgac cagctacacc
//
LOCUS       DASYFY010000413         1547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1396284, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000413 DASYFY010000000
VERSION     DASYFY010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1396284"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..863)
                     /locus_tag="VGN19_08230"
     CDS             complement(<1..863)
                     /locus_tag="VGN19_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195913.1"
                     /translation="MSFVPRKQGPRRRSGRRTALAAVSLLGVLAGTAGPALAVTRPVN
                     WGTPTTTSPYAADAASARNYSAMWGWKQTRAPVTIPTFPVGSVQTPLALSHATIPTDS
                     TSVLMRKTLNTSLKYMLTTWWQQKFGSQSKAAVLNLGGTDEYHVRGPAMEAYALAIAL
                     KTGSYQPTVTGVPLATAQADAVKLVKSLADNHLANSLSGWGLVWESPLWSAQAATAAW
                     LLWDKLDVPTRTAVTKMVLDEANVFNNYQVPYYQAPDGTILFPGDTKAEEDSWDSMIL
                     QVALAMMPTSSL"
     gene            1085..>1547
                     /locus_tag="VGN19_08235"
     CDS             1085..>1547
                     /locus_tag="VGN19_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF429 domain-containing protein"
                     /protein_id="HEV7195914.1"
                     /translation="MLFLGVDLAWGEREPCNETGVVALEPSGRIVEAGWCRGVTEVVD
                     WMTAVARPDTVAFVDASLHVTNLTGQRHCETEVARHYGRWKVAANATNLATPYQAGAS
                     LKHRLEALGWAYDDGLAGPPISGRRFSESFPYTTLVGVPELGYDRERPRYKR"
BASE COUNT          226 a          523 c          531 g          267 t
ORIGIN      
        1 agcgaactcg tcggcatcat ggcgagggcg acctgcagga tcatcgaatc ccagctgtcc
       61 tcctccgcct tggtgtcacc ggggaagagg atcgtgccgt ccggagcctg gtagtagggc
      121 acctgatagt tgttgaagac gttcgcctcg tcgagcacca tcttggtcac ggccgtgcgc
      181 gtcgggacgt ccagcttgtc ccacagcagc caggcggcgg tggcggcctg cgcgctccac
      241 agcggcgact cccacaccag gccccagccg ctgaggctgt tggcgaggtg gttgtcggcg
      301 agcgatttca cgagtttcac ggcgtccgcc tgcgcggtcg ccagaggcac gcccgtgacc
      361 gttggctgat agctgccggt cttcaacgcg atcgcgaggg cgtacgcctc catcgccggc
      421 ccgcggacgt ggtattcgtc ggtgccgccc aggttgagaa ccgcggcctt gctctggctc
      481 ccgaatttct gctgccacca cgtcgtgagc atgtacttca gggacgtgtt cagcgtcttc
      541 cgcatgagga cggacgtcga gtccgtcgga atcgttgcgt ggctcagcgc caacggcgtc
      601 tgtaccgacc cgacggggaa ggtcggaatg gtgaccgggg cccgggtctg cttccagccc
      661 cacatcgccg agtagttgcg ggcggaggcg gcgtcagccg cgtacggact cgtcgttgtg
      721 ggggttcccc agttcaccgg gcgggtcacg gccaaggccg gtcccgcagt cccggcgagc
      781 actcccagga ggcttaccgc ggcgagggcc gtccgccgtc ctgatcgacg gcgaggaccc
      841 tgcttgcgcg gtacaaagct cacctactgg ccatcggcca tccagcgcaa tcacgttagt
      901 ccgacagggc cgacggaacg cacccccgag gcaccatcac ccgattgggt gaccgcttgg
      961 tcgatccggc ccgccaactc cgtgatcttg accttttggt ggctagttga ccttggaagg
     1021 gcaccaaaac gtcgatctcg cgtcggcggc cggatcatcg ccggccttcc ggttgactgg
     1081 ccccgtgctc ttcctcggtg tcgacctcgc ctggggtgag cgcgagccgt gcaacgagac
     1141 gggcgtggtc gcgctcgagc cgtcgggtcg catcgtcgag gccggctggt gccggggtgt
     1201 gaccgaggtc gtcgactgga tgacggcggt ggcgcggccg gacaccgtcg ccttcgtcga
     1261 cgcctccctg cacgtcacca acctgaccgg gcagcgacac tgcgagaccg aggtggcccg
     1321 ccactacggg cggtggaagg tcgcggcgaa cgccaccaac ctcgccaccc cctaccaggc
     1381 cggtgcgtcg ctgaagcatc ggctggaggc gctcggctgg gcgtacgacg acggtctggc
     1441 cgggccgccg atctccgggc gccggttcag cgagtccttc ccgtacacga cgctggtcgg
     1501 ggttcctgag ctcggctatg accgcgagcg cccgcgttac aagcggc
//
LOCUS       DASYFY010000414         1675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1500682, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000414 DASYFY010000000
VERSION     DASYFY010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1500682"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..868)
                     /locus_tag="VGN19_08240"
     CDS             complement(<1..868)
                     /locus_tag="VGN19_08240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEV7195915.1"
                     /translation="MSVDAPVDAAPSLLRSLRIVGVGIRREPRWFALAVAGSTIYGVM
                     TVLTAWAIGKVTREQIQPAVAAGHATAQQLLTIFGWVAGIVVINVVGVVIRRIAAGYT
                     MYNVAAGFRREVTRQYLRLPLSWHHRHPSGQLLSNANADVEATWNVFAPLPMALGVII
                     MLVAGIVQMVLVDPVMALIGLTVFPALFLANLVFQRAMSPRVSLAQQLRAEVSEVAHE
                     SFEAALIVKSMGREAQEARRFEEVTRRLQAANVEVGRTRGTFDPVIEAIPTLGTLAVL
                     VVGTHQVANGSLE"
     gene            941..1585
                     /locus_tag="VGN19_08245"
     CDS             941..1585
                     /locus_tag="VGN19_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03085 family metal-binding protein"
                     /protein_id="HEV7195916.1"
                     /translation="MTHLASLERQALCDTLVAVGPEAPTLCSPWTTADLAGHLVVRER
                     RPDRSAGIWLPAMAGVTERAMKGYAALPWPEPVELLRSGPPAWSPTRIARVDDLFNLL
                     EFVIHHEDVLRGDEQPGPRRELSARLDAAIWKSMSRLSRLTFRRCTVGVVLETPDGRS
                     QLARAETDLGAVVLRGAPLELLLTASGRRRVAAIEAVGSAEAIEALWSTPLGLS"
     gene            complement(1592..>1675)
                     /locus_tag="VGN19_08250"
     CDS             complement(1592..>1675)
                     /locus_tag="VGN19_08250"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019137293.1"
                     /note="catalyzes the conversion of
                     5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-
                     1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine
                     to imidazole-glycerol phosphate,
                     5-aminoimidazol-4-carboxamideribonucleotide and glutamate;
                     the HisF subunit acts as a cyclase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEV7195917.1"
                     /translation="AASVFHFGDLTIAAVKDALRQAGVTVR"
BASE COUNT          250 a          582 c          609 g          234 t
ORIGIN      
        1 gctccagcga gccgttggcc acctggtggg tgccgaccac gaggacggcc agggtgccga
       61 gggtggggat cgcctcgatc accgggtcga acgtcccgcg ggtgcggccg acctcgacgt
      121 tcgcggcctg cagccgccgg gtgacctcct cgaagcggcg cgcctcctgc gcctcgcgtc
      181 ccatcgactt gacgatgagc gccgcctcga agctctcgtg cgccacctcg ctcacctccg
      241 cacgcagctg ctgggcgagg gagacccgcg gcgacatcgc gcgctggaag acgaggttgg
      301 cgaggaagag cgccgggaac accgtcagcc cgatgagcgc catgacgggg tcgacgagca
      361 ccatctgcac gatgccggcc accagcatga tgatcacgcc cagggccata ggcagcggcg
      421 cgaagacgtt ccacgtggcc tcgacgtcgg cgttggcgtt ggagagcagc tggcccgagg
      481 ggtgtcgatg gtgccaggac agcggcaggc gcaggtactg ccgcgtcacc tcacggcgga
      541 agccggccgc gacgttgtac atcgtgtagc cggcggcgat ccgccggatc acgactccga
      601 cgacgttgat gacgacgatg cccgcgaccc agccgaagat ggtgaggagc tgctgggcag
      661 tggcgtggcc ggcggccacg gcgggctgga tctgctcgcg ggtgaccttg ccgatcgccc
      721 aggcggtgag caccgtcatg acgccgtaga tcgtgctgcc ggccaccgcg agggcgaacc
      781 atcggggctc gcggcggatg ccgacaccga cgatccgcag gctgcgcagc agcgacgggg
      841 cagcgtcgac gggcgcatcg acagacacag aggtcctccg ggaatcgcac gacgtggggg
      901 tgaacgacca ccctctcacg cagcaggcat catggctgtc atgacccatc tcgcgagcct
      961 cgagcgccag gccttgtgcg acaccctggt cgctgtcggt cccgaggccc ccaccctctg
     1021 ctcaccgtgg accacggccg acctcgccgg gcacctcgtc gtgcgcgagc ggcggccgga
     1081 ccggtccgcc ggcatctggt tgcccgccat ggcaggcgtc accgagaggg ccatgaaggg
     1141 gtatgccgcg ctgccctggc ccgagcccgt ggagctcctg aggtcagggc caccggcgtg
     1201 gtcgccgacg cgcatcgcgc gggtggacga cctcttcaac ctcctggagt tcgtgatcca
     1261 ccacgaggac gtgctccggg gcgacgagca gccgggtcca cggcgcgagc tctcagcccg
     1321 gctcgacgcc gcgatctgga agtcgatgtc ccggctctcg cggctgacct tccgacgctg
     1381 caccgtgggc gtcgtgctcg agactcctga cgggcggtcc cagctggccc gtgctgagac
     1441 cgacctggga gcggtcgtgc tccgcggtgc gccactggag ctgctgctca cggcatccgg
     1501 gcgtcggcgc gtggccgcca tcgaggcggt ggggagcgcg gaggccatcg aggccctgtg
     1561 gtcgaccccc ctgggcctgt cctgacccag gtcagcggac agtgacgccg gcctggcgca
     1621 gggcgtcctt gacggctgcg atggtcaggt caccgaagtg gaacacgctg gctgc
//
LOCUS       DASYFY010000415         6528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_921705, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000415 DASYFY010000000
VERSION     DASYFY010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6528
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_921705"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1170
                     /locus_tag="VGN19_08255"
     CDS             76..1170
                     /locus_tag="VGN19_08255"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195918.1"
                     /translation="MQIRRLNADDVEEFNAFHAVLEQAERFERPYAGVWSLEEARIIF
                     TDDDPGERIDAFVAVDRGEIAVDRDEVIGAGAAFSGIQDNLHLSYVSAWVPPQRRRQG
                     IGSAILAELVACCRTDGRTDIAMETAYPFEHQDDHPYRRFAEKHGFVLANREVARVLD
                     LPVDETLLAALAGEARAAHGGYRIETFEGVIPEPLVAGLCAVRNQLAVDAPTGLLDFE
                     PEAITPAVLRFREDALRRQGRTLLSTLALTEDDHVVVGYSDLVIPAGDLPNVHQWGTL
                     VLRRHRGHRLGLAMKAHALQELQRRVGPERTRVLTCNAEQNASMVAINERLGFRPVEN
                     VPAFLLRLPSERGVRAAGPRRHVGLATTSG"
     gene            1202..1513
                     /locus_tag="VGN19_08260"
     CDS             1202..1513
                     /locus_tag="VGN19_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein"
                     /protein_id="HEV7195919.1"
                     /translation="MLVAFSVAPSLADDDTGSVSRAVAAAVEVVRASGLPNRTDAMFT
                     TVEGEWDECMAVVKGAVDAVAAFGPRVSLVLKADIRAGFSGELTGKLDRLELALEQRQ
                     G"
     gene            1575..2090
                     /locus_tag="VGN19_08265"
     CDS             1575..2090
                     /locus_tag="VGN19_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009073908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7195920.1"
                     /translation="MPKPIRLPFDPITRAAQLWVRRWGRSSQPLAMASATSIMRVQQL
                     LITDYDAIVGRHGLSFARYEALVLLAFSRDGRLGMSKIGQRLMVHPTSATNIVQRLDA
                     QGFVERVPNPDDGRGTLAIITPAGRDAMEAATSDLVKVRFSLGMLTAAEHEQLFEILR
                     KVRVGAADFDG"
     gene            2140..3867
                     /locus_tag="VGN19_08270"
     CDS             2140..3867
                     /locus_tag="VGN19_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEV7195921.1"
                     /translation="MTQSPQSEATGAARWQARYDAAQAKGQVREADFTTLSGMPVEPA
                     YGPQDGSEPPERIGWPGEFPFTRGLYPTGYRGRTWTIRQFAGFGNAVQTNERYKMILE
                     RGGGGLSVAFDMPTLMGRDSDDAMSLGEVGHCGVAIDSAADMEVLFKDLPLEDITTSM
                     TISGPAVPVFCMYLVAAERQGVDPSVLNGTLQTDIFKEYIAQKEWLFEPEPHLRLIGD
                     LMEYCNQNIPDYKPLSVSGYHIREAGSTAAQELAFTLADGFGYVELGLSRGLDIETFA
                     PGLSFFFDSHLDFFEEIAKFRAARRIWARWLRDVYGAKTDKAQWLRFHTQTAGVSLTA
                     QQPYNNVVRTAVEALAAVLGGTNSLHTNALDETLALPSEQAAEIALRTQQVIMEETGV
                     VNVADPLGGSWYVEALTDKIEAEAEAIFEKITAMGELGKPRNAQGGVDHQVGPMTSGI
                     LRGIEDGWFMSEIAEAAFQYQIALEKGDKKVVGVNCHTASVTHELEILRVSHEVEREQ
                     VAALEARRAQRDDAAAKAAVLHMVDVARTDANMVPAMLDAVRAEATLGEICDALRAEW
                     GVYREPARF"
     gene            complement(3864..4574)
                     /locus_tag="VGN19_08275"
     CDS             complement(3864..4574)
                     /locus_tag="VGN19_08275"
                     /inference="COORDINATES: protein motif:HMM:NF028169.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195922.1"
                     /translation="MTLRAKSSRSRRPGRPREEATEQAITQAARQVLADKGVARMSME
                     LVAHKAGVAKSTLYRRWPSKVELAVHAVAVTFDTIDVEDHGSLAADMRAGIGEAARLL
                     RDPSIGASYAALLAESARDPDGVGRKVRESLSTRLHDIVASSVERAIARGEIRREMID
                     VDLLADIVVGSVMHRALVTGEPDAAFVDGLIDLLADVAYARLRRAQRAEGTADTGDTG
                     DTGDTGDAGDVTEELDQL"
     gene            4728..5414
                     /locus_tag="VGN19_08280"
     CDS             4728..5414
                     /locus_tag="VGN19_08280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195923.1"
                     /translation="MHIMAKRALLAALTAVGLVLLVLGTWFIAHLGTSGTATFRTHSA
                     RGVVVLQPTLLDRVDGAVTVTAVAAHGGPIFVGVASPGDAAAIVGEADRTSVTGVRVR
                     DWSLVTTHTGSGTIPNLSTADLWHRVGTGTGTVALALDPADTPVAVVVATKDGGPADL
                     TSLTVRIQHATWTVQSIVVAVVGLLLLLAGVFGLSRLRSAPLGTARHVGPRVGTDETD
                     ETDVTNEAVS"
     gene            5414..6400
                     /locus_tag="VGN19_08285"
     CDS             5414..6400
                     /locus_tag="VGN19_08285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195924.1"
                     /translation="MRTLLSRPTAIAALMLVLTSTTACASMVGVHDVPTPATAGAPLS
                     ALQAEQIATRVLTQASAASLATGTEAKTLRAASLTGSALTVANAADQLGPTVPNPNPV
                     TRTAQPRVLAISRGPSWPRVILVQTSDANGSTILNLLTSADPQTAFRLSARATMQGGA
                     TIPALDALTDGSPLTVDSAKLAVDPAHLASEYAASVGFPTATAAADVSTTDPFSTGVR
                     ANAAAQAKSFGDLATLTRQHKPHPEDLVTIGLRGGGALVFALLERTDDITLKSAGKSL
                     TPSAAFQKLVGKKTLTQSAELKSYETVVFTLPAKGQASVVAVDETLVSAKGA"
BASE COUNT         1013 a         2315 c         2193 g         1007 t
ORIGIN      
        1 gaccgggtct gatcgccgga gcggcccgcc gaaaaccagt ggtatgccgg gtgcctgggt
       61 atctaccgtc gaagcatgca gatccgacgg ctgaacgccg acgacgtgga ggagttcaac
      121 gccttccacg ccgtcctcga gcaggccgag cggttcgagc gtccgtatgc gggggtgtgg
      181 agtctggagg aggcccggat catcttcact gacgacgacc ccggtgagcg gatcgacgca
      241 tttgttgccg tcgatcgagg cgagatcgcg gtggatcgag acgaagtcat cggtgccggg
      301 gccgccttct cggggatcca ggacaacctt cacctcagct acgtgagtgc ctgggtcccc
      361 ccgcagcgtc gcaggcaggg catcggctcg gcgatcctcg ccgagctggt cgcctgctgc
      421 cgcaccgacg gtcgcaccga catcgcgatg gagacggcat accccttcga gcaccaggac
      481 gaccatccgt accgacggtt cgccgagaag cacgggttcg tcctcgccaa ccgcgaggtg
      541 gccagggtgc tcgacctgcc cgtcgacgag accctgctgg cagctctggc gggggaggcg
      601 cgagcggctc atggcggcta ccgcatcgag acgttcgagg gggtcatccc cgagcccctg
      661 gtcgcaggac tgtgcgccgt ccggaaccag ctcgccgtcg atgcgccgac ggggctgctc
      721 gacttcgagc cggaggcgat cacccctgcc gtgctgcggt ttcgggagga cgcgctgcga
      781 cgccagggtc ggaccctgct ctccacgctc gctctcaccg aggacgacca tgtggtcgtg
      841 ggctacagcg acctcgtcat cccggctggc gacctgccga acgtccacca gtgggggacg
      901 ctggtcctgc gccgacatcg cggccaccgg ctaggcctgg ccatgaaggc tcatgccctg
      961 caggagctcc agcgacgcgt cggccccgag cgcaccaggg tgctgacctg caacgccgag
     1021 cagaacgcct cgatggtcgc catcaacgaa cgcctcgggt tccggccggt ggagaacgtc
     1081 cccgccttcc tgctcaggct gccctccgaa cggggcgttc gggcggccgg tccccgtcgc
     1141 cacgtcgggc tggccaccac ctccggctga gcagcccaac gccgcggcat acggtgggcc
     1201 catgcttgtt gccttctcag tcgccccttc actcgccgat gacgacacag gctcggtgag
     1261 ccgggcggtc gccgccgctg tcgaggtggt gcgggcctcc ggactcccga accgcaccga
     1321 cgcgatgttc accaccgtgg agggggagtg ggacgagtgc atggccgtgg tgaagggagc
     1381 ggtcgatgcg gtcgcagcct tcggcccccg ggtcagtctg gtgctcaagg ccgacatccg
     1441 tgcgggcttc agcggtgagc tcaccgggaa gctggaccgc ctcgagctgg cgctcgagca
     1501 gcgccagggc tagcagttgc gcggaccgcg agatggtccc actcagcggc cgccgcggcc
     1561 actagcctgc cttcgtgccc aagccgatcc gcctcccgtt cgaccccatc acccgggctg
     1621 cccagctgtg ggttcgacgc tggggtcgtt cgtcacaacc gctcgcgatg gccagcgcca
     1681 cgtcgatcat gcgcgtgcaa cagctgctga tcaccgacta cgacgccatc gtcggtcggc
     1741 acggcctcag cttcgcgcgc tacgaggcct tggtgctgtt ggcgttcagt cgtgacggca
     1801 ggttggggat gagcaagatc ggccagcggc tcatggtcca tccgaccagc gccaccaata
     1861 tcgtgcagcg gctcgatgcc caggggttcg tcgagcgggt gcccaacccc gacgatggca
     1921 ggggcaccct ggccatcatc actccggccg ggcgagacgc gatggaggct gccacgtccg
     1981 acctggtcaa agtccggttc agcctgggca tgctgactgc ggccgagcac gagcagctct
     2041 tcgagatcct gcgcaaggtg cgcgtgggcg cggcggactt cgacggctga ttttcggctg
     2101 gacgtgacat ttactaggac gtcctagtaa attcagccca tgacccagag cccccagtcc
     2161 gaggcaaccg gcgccgcccg gtggcaggcc cgctacgacg cagcccaggc caagggccag
     2221 gtgcgcgagg ccgacttcac caccctgtcc ggtatgccgg tcgagccggc ctatggcccg
     2281 caggacgggt ccgagccccc cgagcggatc gggtggccgg gggagttccc cttcactcgt
     2341 gggctctacc ccaccgggta ccgcggtcgg acctggacga tccgccagtt cgccggcttc
     2401 ggcaacgccg ttcagaccaa cgagcgctac aagatgatcc tcgagcgcgg cggcggtggc
     2461 ctgtccgtgg ccttcgacat gcctaccctt atgggccgcg actccgacga cgccatgagc
     2521 ctcggtgagg tcggccactg cggggtggcg atcgactccg ccgccgacat ggaggtgctg
     2581 ttcaaggacc tgcccctcga ggacatcacc acctcgatga cgatcagtgg gccggccgtg
     2641 ccagtcttct gcatgtacct cgtggctgcg gagcgtcagg gcgtcgaccc cagcgtgctc
     2701 aacggcaccc tgcagaccga catcttcaag gagtacatcg cgcagaagga gtggctgttc
     2761 gaacccgagc cccacctgcg cctgatcggc gacctgatgg agtactgcaa ccagaacatc
     2821 ccggactaca agccgctctc ggtctccggg taccacatcc gcgaggccgg ttcgacggcc
     2881 gcgcaggagc tggcgttcac gctcgccgac ggcttcgggt acgtcgagct ggggctgtcg
     2941 cggggcctcg acatcgagac cttcgccccc ggcctgtcgt tcttcttcga cagccacctg
     3001 gactttttcg aggagatcgc caagttccgc gccgcgcgcc ggatctgggc ccggtggctt
     3061 cgcgatgtct acggcgccaa gaccgacaag gcccagtggc tgcggttcca cacccagaca
     3121 gccggcgtga gcctgaccgc acagcagccg tacaacaacg tcgtccgcac cgcggtggag
     3181 gcgctcgccg cggtcctggg tggcacgaac tcgctgcaca ccaacgccct cgacgagacg
     3241 ctggcgctgc ccagcgagca ggcggccgag atcgccctgc gtacgcagca ggtcatcatg
     3301 gaggagacgg gggtcgtcaa cgtcgcggac ccgttgggtg gcagctggta cgtcgaggca
     3361 ctcaccgaca agatcgaggc cgaggccgag gcgatcttcg agaagatcac cgccatgggt
     3421 gagctcggca agccgcgcaa cgcccagggc ggcgtcgacc accaggtcgg accgatgacc
     3481 tctggcatcc tgcgcgggat cgaggacggc tggttcatgt cagagatcgc cgaggcggcc
     3541 ttccagtacc agatagccct cgagaagggc gacaagaagg tcgtcggcgt gaactgccac
     3601 acggcgtcgg tcacccacga gctcgagatt ctgcgggtga gccacgaggt cgagcgcgag
     3661 caggtggccg cgctggaggc ccgtcgcgcc cagcgtgacg acgccgcggc gaaggccgcc
     3721 gtcctgcata tggtcgacgt ggcgcggacg gacgcgaaca tggtgcccgc gatgctcgac
     3781 gcggtccgag ccgaggccac gctgggcgag atctgcgacg cgctgcgagc cgagtggggt
     3841 gtctaccgcg agcctgcccg cttctagagc tggtcgagtt cctcggtgac gtcgcctgcg
     3901 tcccctgtgt cccctgtgtc ccccgtgtct cccgtgtccg ctgtgccctc tgcccgctgg
     3961 gcccggcgca accgggcgta ggcgacgtcg gccagcaggt cgatgagccc gtcgacgaac
     4021 gcggcgtcgg gctcaccggt gacgagcgcg cgatgcatga ccgagcccac cacaatgtcg
     4081 gcgagcaggt ccacgtcgat catctcgcga cggatctcgc cacgggcgat ggcacgctcg
     4141 accgagctgg cgacgatgtc gtgcagccgg gtggagaggg actcgcggac ctttcgaccg
     4201 accccatcgg ggtcgcgcgc cgactcggcc agcaacgcgg catacgaagc gccgatcgag
     4261 gggtcgcgca gcagccgcgc cgcctccccg atcccggccc gcatgtccgc cgcgagcgac
     4321 ccgtggtcct cgacgtcgat ggtgtcgaag gtgaccgcca ccgcatgaac ggcgagctcg
     4381 accttgctcg gccaccggcg gtacaacgtg ctcttggcca caccggcctt atgcgccacc
     4441 agctccatgg acatccgggc gacgcccttg tcggccagga cctgcctggc cgcttgcgtg
     4501 atcgcctgct cggtcgcctc ttcgcgaggg cggcccggtc ggcggctgcg cgaggacttc
     4561 gctcgaaggg tcatcagggg cgatcatgcc atcgcctagc caaccagcag tcgtgcacaa
     4621 ggttgagccg ccgagatttg tcgtctcggg ccggtctggg tcatggtgga cgttgatgcc
     4681 ggcagcgcat agcccccgcg ccggcccgct cacgtaagga ttcctccgtg cacatcatgg
     4741 ccaagcgcgc cctcctcgcg gcgctgaccg cggtcggact ggtgctcctg gtgctcggca
     4801 cgtggttcat cgctcacctc ggcacttccg gtaccgccac cttccgtacg cattcggcgc
     4861 gtggcgtcgt ggtgctgcag ccgaccctgc tcgaccgcgt ggacggcgcc gttacggtca
     4921 ccgcggtggc tgcccacggg ggcccgatct tcgtgggcgt ggccagccct ggggacgccg
     4981 cggccatcgt cggggaagcc gaccggacca gcgtcacggg cgtccgggtg cgggactggt
     5041 cgctggtcac gactcatacc ggatcgggaa ccattccgaa cctcagcacg gccgacctct
     5101 ggcatcgcgt cggaacgggc actggcacgg tggccctggc gctcgacccg gccgacacac
     5161 ccgtcgcggt cgtggtcgcc accaaggacg gtgggccagc agacctgacc tcgttgaccg
     5221 tgcgcatcca gcacgcgacc tggacggtcc agtcgatcgt cgtcgcagtg gttggcctgc
     5281 tgctgttgct ggccggggtt ttcggcctgt cacgcctacg gtccgcgccc ctggggaccg
     5341 cgcgacacgt aggcccacgc gtggggacgg atgaaacgga cgagacggac gtgacgaacg
     5401 aggcggtgag ctgatgcgca ccctgctcag caggccgacg gccattgcag ctttgatgct
     5461 cgtgctgacc agcaccacgg cttgcgcgtc catggtgggt gtccatgacg tccccacccc
     5521 cgcgaccgcc ggagcgcccc tgtcagcctt gcaggcagag cagatcgcga cccgggttct
     5581 cacccaggcc tcggccgcga gcctcgcgac cgggaccgag gccaagaccc tgcgggctgc
     5641 ctcgttgacc ggcagtgcgt tgaccgtggc caacgctgcc gaccagctcg gccccaccgt
     5701 gcccaacccg aacccggtca cccggaccgc gcagccccgg gtgctggcga tctcgcgggg
     5761 ccccagctgg cctcgagtca tcctcgttca gaccagcgac gccaacggtt ctacgatcct
     5821 gaacctgctg acctccgccg acccgcagac tgcgttccga ctctcggccc gcgcgacgat
     5881 gcagggcggc gccaccatcc ctgccctgga tgcgctcacc gacggctcac ccttgaccgt
     5941 ggactcggca aagctcgcag tggacccagc acacctggcg tccgagtatg ccgccagcgt
     6001 gggctttccg acggcgaccg ccgccgcaga tgtctcgacc accgacccgt tctcgaccgg
     6061 ggtgcgcgcc aacgccgccg cccaggcgaa gtcgttcggc gacctggcca ccttgacgcg
     6121 tcagcacaag ccacatcccg aggacctggt gacgatcggg ctgcgcggcg ggggagcgct
     6181 ggtcttcgcc ttgctcgagc ggaccgatga catcaccctc aagtccgccg gcaagtcgct
     6241 cacccccagc gcggctttcc agaagctcgt cggcaagaag accctgaccc agagcgcgga
     6301 gctgaagtcc tacgagaccg tcgtcttcac cctcccggcc aagggacagg cttcagtggt
     6361 cgccgtcgac gagaccctcg tctccgccaa gggcgcctga gcgtgcccgg tagcggtgag
     6421 ggagaatccc accatgactg atcagcccac cacgcccggc ctgcgcggtg ccgtcgacct
     6481 gtccggcctg tggggcaccg caggcgctcc cggaccgagc cgtccgag
//
LOCUS       DASYFY010000416         2388 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1238339, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000416 DASYFY010000000
VERSION     DASYFY010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1238339"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VGN19_08290"
     CDS             <1..482
                     /locus_tag="VGN19_08290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195925.1"
                     /translation="SLAVGAVGLGALRGLSMRVWATNGWVVRQGNAVTMALWLVSLLV
                     QFAAGSASNHSGGAGLEAASFLLYLGLTLGVQYYVVFRRALPLWEQLGPNAGRPLQVQ
                     FTQGPGAFFATFRAEAGGPPGWGPAGGAAPEPNDPNVIDAEVVEDDDHGPPELHAPR"
     gene            504..1169
                     /locus_tag="VGN19_08295"
     CDS             504..1169
                     /locus_tag="VGN19_08295"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009079687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEV7195926.1"
                     /translation="MTAPRTFSQRPYVGPPGSTELLLVRHGASADSVEGESFELVEGQ
                     GDPPLSEAGRHQAEQVALRLAHEPIDGVYVSSLRRTAQTAAPLVDRTGLVPVVDAELR
                     EVYLGEWEGGLLRQKAVDGDPMFEAVLREQRWDVVPGAESRAVFGGRLRAAVERIAGS
                     HPGGRVVVFGHGAAIGEIIAQASGSTPFAFINADNASISRIVVTPERWIVRGYNDTAH
                     LRE"
     gene            1245..1556
                     /locus_tag="VGN19_08300"
     CDS             1245..1556
                     /locus_tag="VGN19_08300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEV7195927.1"
                     /translation="MWAQLITTRLKPGKEDGLSTLVEQLQAAEQPDTGLVRSTTMRDQ
                     NDPLKVYTMVVFDSEESARAREDDPRRAEGLHAARATMAEIFAEPPTFTDLLVVGEST
                     Y"
     gene            complement(1569..2204)
                     /locus_tag="VGN19_08305"
     CDS             complement(1569..2204)
                     /locus_tag="VGN19_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015884542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7195928.1"
                     /translation="MTDQALAGTTIGQAEPPVTDDGGPVRPMRADARRNYDKLVAAAR
                     EVFLQQGGGASLEAIAKEAGVGVGTLYRHFPKRIDIVEAVYREDVDGLLSSAKEFGAD
                     LEPWPALVAWLEAFVRYANTKRTFLNELHEAFEENPQLRINSRERMEAAIDLVLRPAQ
                     DAGVVRTDLDGSDLMQLLASMCMSASLKPGQSERLLVMIQDGLRPPQDNKT"
BASE COUNT          352 a          843 c          837 g          356 t
ORIGIN      
        1 gctccctggc cgtcggcgca gtggggctgg gcgcgctacg cggcctctcc atgcgggtgt
       61 gggcgaccaa cggctgggtg gtccgccagg gcaacgcggt caccatggcg ctgtggctgg
      121 tgtcgctgct ggtgcagttt gcggcaggca gcgccagcaa ccactcgggc ggggcgggcc
      181 tggaagcggc gagcttcctc ctctacctgg gcctgacact cggcgtgcag tactacgtgg
      241 tgttccgccg cgcactaccc ctgtgggagc agctcgggcc gaacgcgggt aggccgctgc
      301 aggtgcaatt cacccagggg ccgggcgcct tcttcgccac cttccgcgcc gaggctggcg
      361 gcccgcccgg atggggaccc gctggcggcg ccgcgccgga gcctaacgac cccaacgtga
      421 tcgacgcaga ggtcgtggag gacgacgacc acgggccacc cgagctgcac gcgccgcgct
      481 gatcgttcct acactcggcg tccgtgacgg cgccccgcac cttcagccag aggccctacg
      541 tcggcccgcc cggttccacc gagctcctct tggtccgcca cggcgcgtcg gcggactcgg
      601 tggagggaga gtccttcgag ctcgtcgagg gccagggcga cccgccgctg tccgaggcgg
      661 gccggcacca ggccgagcag gtggcgctgc gcctggccca tgagcccatc gacggcgtgt
      721 acgtcagcag cctgcggcgc acggcccaga cggcggcgcc gctggtggac cggaccggcc
      781 tcgtcccggt agtcgacgcc gaactgcgcg aggtctacct cggcgagtgg gagggaggcc
      841 tcttgcgcca gaaggcggtg gacggtgacc ccatgttcga agcggtgctg cgcgagcagc
      901 gctgggacgt cgtccccggt gccgagtcgc gtgcggtctt cggcgggcgg ctgcgggcgg
      961 ccgtcgagcg catcgccggc tcgcatcccg gtggccgcgt ggtcgtcttc ggccacggag
     1021 ccgccatcgg cgagatcatc gcccaggcca gcggctccac cccgttcgcc ttcatcaacg
     1081 ccgacaacgc gtcgatctcg aggatcgtgg tgacgcccga acgctggatc gtacggggct
     1141 acaacgacac ggcccacttg cgggagtgag ggcgccggtc ctccgtcgtc cgtgctgacc
     1201 gggcactagg gtgcgggctc cacggcgcga acggagggct cgacatgtgg gcacagctga
     1261 tcaccacccg cctcaagccg ggcaaggagg acggactcag cacgctggtc gagcagttgc
     1321 aggccgccga gcaaccggac acgggactgg tgcggtcgac caccatgcgg gaccagaacg
     1381 acccgctcaa ggtctacacg atggtcgtgt tcgacagcga ggagagcgcc cgcgcccgcg
     1441 aggatgaccc gcgccgggcg gaagggctgc acgcggcgag ggcgacgatg gcggagatct
     1501 tcgccgagcc cccgacgttc acggacctgc tcgtcgtcgg cgagtcgacg tactagagcg
     1561 gcctgacgtc aggtcttgtt gtcctgcgga ggccgcagcc cgtcctggat catgaccagg
     1621 agccgctcgc tctgacccgg cttcagtgac gcgctcatgc acatggacgc gaggagctgc
     1681 atgaggtcag acccgtcgag atcggtgcgc acgacaccgg cgtcctgcgc cgggcgcagc
     1741 accaggtcga tggcggcctc catgcgctcg cgcgagttga tccggagctg cgggttctcc
     1801 tcgaaggcct cgtggagctc gttcaggaag gtccgcttgg tgttcgcgta gcggacgaag
     1861 gcctccagcc aggcgacgag cgcgggccat ggctcgagat ccgccccgaa ctccttggct
     1921 gaggacagga gcccgtcgac gtcctcgcgg tacaccgcct cgacgatgtc gatccgcttc
     1981 gggaagtgcc ggtacagcgt cccgacaccg acgccggcct ccttggcgat cgcctccagg
     2041 gacgcaccgc caccctgctg gaggaagacc tctcgggccg cggccaccag cttgtcgtag
     2101 ttgcgcctgg cgtcggcccg catcgggcgg accgggccgc cgtcgtcggt gaccggtggc
     2161 tcggcctgac cgatggtcgt accggccagc gcctgatccg tcatcgtcct gcctccctcc
     2221 tggggtcccc gactcactgg gttgcaaaac ggaggaaccc tccgtatact aaccggagag
     2281 gtcctccaca tcattctgga ggatgcctcc actttaatcc cctcagcacc ccccgtcgaa
     2341 cggagaaccc tccatgtcag acaccttgac ccgacgcgcc cccggacc
//
LOCUS       DASYFY010000417         1732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_921808, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000417 DASYFY010000000
VERSION     DASYFY010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_921808"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VGN19_08310"
     CDS             <1..359
                     /locus_tag="VGN19_08310"
                     /inference="COORDINATES: protein motif:HMM:NF020532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1876 domain-containing protein"
                     /protein_id="HEV7195929.1"
                     /translation="LIYPGPGSVLRVADAATEIHPLSASERGGTVRHWQVRVSIFEAG
                     DDTTATVALVADSPDELTGKGTTHRGSGDRENPRIGDEVAVARALRHLADDLLSQATH
                     EIEVATGRVDVAVRPR"
     gene            complement(363..1727)
                     /locus_tag="VGN19_08315"
     CDS             complement(363..1727)
                     /locus_tag="VGN19_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017199531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEV7195930.1"
                     /translation="MSTFAADPSEGRRIHDLDRAHVFHSWSAQAALDPLVVAGAEGSY
                     VWDYEGTRYLDFSSQLVNVNIGYQHPRMVAAIQEQAARLTTISPAFANDARSEAARLI
                     AELAPGDLNRVFFTNGGAEATENALRMARLHTGRHKVMAAYRSYHGATAGAIAVTGDP
                     RRWASEPGMPGVVRYWGPYLYRSAFHAQTEQEESERALQHLRDLLMVEGPHTVAAIIL
                     ETVVGTNGILVPPPGYLQGVRDLCDEYGIVMVADEVMAGFGRCGEWFAVDHWGVTPDL
                     ITFAKGVNSGYVPLGGVVISERIAETFDQRPFPGGLTYSGHPLACASAVASIGIFKDE
                     GILEHVRSLGEDVIGPGLRAIADKHPSVGEVRGLGVFWALELVRDRHTREPLVPFNAA
                     GADAKAMNDFAAACKERGLWPFTHFNRTHVVPPCTTTAVEVREGLAILDEALTVADGY
                     YTGT"
BASE COUNT          267 a          585 c          629 g          251 t
ORIGIN      
        1 ggctgatcta tccggggccg ggctcggtgc tgcgggtggc cgacgccgcc accgagatcc
       61 accccctcag cgcaagcgag cgaggcggaa cggtgcggca ctggcaggtc agggtgtcga
      121 tcttcgaggc gggcgacgac acgaccgcca cggttgccct ggtcgcggac tccccggacg
      181 agctgaccgg aaagggcacc acgcaccgtg gctcgggtga ccgcgagaac ccccggatcg
      241 gcgacgaggt ggccgtggca cgcgcgttgc gtcacctcgc ggacgacctc ctctcgcagg
      301 ccacccacga gatcgaggtt gccacgggac gagtcgatgt cgcagtgcgc ccgcgctgag
      361 ggctacgtcc cggtgtagta cccgtccgcc acggttagcg cctcgtcgag gatggcgagc
      421 ccctcacgaa cctcgaccgc cgttgtcgtg cagggcggga cgacgtgggt gcggttgaag
      481 tgggtgaacg gccacaggcc gcgttccttg cacgccgcag cgaagtcgtt catcgccttc
      541 gcgtcggcgc ctgcggcgtt gaacggcacc aacggctcgc gggtatgccg gtcacgtacc
      601 agctcgaggg cccagaagac ccccagcccg cgaacctcgc cgacgctggg gtgcttgtcc
      661 gcgatggccc gcaaccctgg gccgatgacg tcctcgccca gggaccgcac gtgctcgagg
      721 atgccctcgt ccttgaagat gccgatcgac gcgacggccg aggcgcaggc cagcgggtgc
      781 ccggagtagg tcagcccacc ggggaagggt cgctggtcga acgtctcggc gatgcgttcg
      841 gagatgacga cccctcccag cgggacatag ccgctgttga cccccttggc gaaggtgatg
      901 aggtcgggcg tgacgcccca atggtcgacg gcgaaccact cgccacagcg gccgaagccg
      961 gccatcacct cgtcggcgac catgacgatg ccgtactcgt cgcacaggtc gcgaacaccc
     1021 tgcaggtagc caggcggcgg gaccagaatg ccgttggtgc cgacgacggt ctccaggatg
     1081 atcgccgcga cggtgtgcgg accctcgacc atgaggaggt cgcgcagatg ctgcagggcc
     1141 cgctcggact cctcctgctc ggtctgcgcg tggaacgccg aacggtagag gtagggaccc
     1201 cagtaccgca cgacccccgg cataccgggc tccgaagccc aacgtcgcgg gtcgccggtc
     1261 accgcgatcg cgcccgcggt ggccccgtga tagctgcggt acgccgccat caccttgtgc
     1321 cgtccggtgt gcaggcgggc catccgcagg gcgttctcgg tcgcctcggc gccgccgttg
     1381 gtgaagaaca cccggttgag atcgcctggc gccagctcgg cgatgagacg ggccgcttcg
     1441 gagcgcgcgt cattggcgaa ggccgggctg atggtggtca gccgggccgc ctgctcctgg
     1501 atggccgcca ccatgcgcgg atgctggtag ccgatgttga cgttgaccag ctggctggag
     1561 aagtccaggt accgggtgcc ctcgtagtcc cagacgtagg acccctcggc gccggcgacc
     1621 acgagcgggt cgagggcggc ctgcgccgac caggagtgga agacgtgggc gcggtcgagg
     1681 tcgtggatgc gacggccttc gctggggtcg gcggcgaacg tgctcatgcg gg
//
LOCUS       DASYFY010000418         2404 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_81504, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000418 DASYFY010000000
VERSION     DASYFY010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81504"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VGN19_08320"
     CDS             <1..374
                     /locus_tag="VGN19_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7195931.1"
                     /translation="SLEEVVARLRALMRRTAVLTDDGSSMLVVGDLTMDEDSHEVTRS
                     GDQIQLTATEFELLRYLMRNPKRVLSKAQILDRVWNYDFGGQANVVELYISYLRKKVD
                     AGRDPMIHTMRGVGYVLKPAP"
     gene            371..1834
                     /locus_tag="VGN19_08325"
     CDS             371..1834
                     /locus_tag="VGN19_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7195932.1"
                     /translation="MSQAPTNRVRDGLRPSRWSLTTKLVAAVVGLFLAVTLTTAALTV
                     VLLHQHLVQQLDQDVQATVLRAGGGPRGPGDGGGPGGGVTPPGGLGESLRLIIAPDGT
                     TTSHVEHQRTPTTLTGAQIAQLNAAGIGQTPKTVDVGGLGPYRVAAMREADGDLVIAG
                     LPLAGVTETVSQTIILVTGGTIVGFILVTVGGLWLVRRNLAPLQRVAHTATQVAKLRL
                     DTGNVALAQRVAAADADPYTEVGQVGLALNNMLDNVEGALQARHESELRVRQFVADAS
                     HELRTPLASIRGYAELSRREREPVPPSITHALTRVESEALRMQGLVEDLLLLARLDAG
                     RPLDREPVDLSLLAMDAVSDAHAAAPDHRWELDLPDEPIEVSGDHARLHQVVANLLAN
                     ARTHTPPGTRVTTAIKAEGQWVRVSVTDDGPGVPKSLQRNVFQRFTRGDDSRNRAAGS
                     TGLGLSIVDAVARSHGGTVELKSDPGDTTFTVLLPVG"
     gene            1934..>2404
                     /locus_tag="VGN19_08330"
     CDS             1934..>2404
                     /locus_tag="VGN19_08330"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEV7195933.1"
                     /translation="MDTITLPHTATASVPATTAAPPDLTASAPATQPPASRVQRLWRG
                     PQDDPSWARPALLGLLLATAVLYFYNLTSSGYANSFYSAAVQAGSASWKAFLYGSSDA
                     GNSITVDKPPASLWLMALSVRALGLSSFSILLPEVLMGVATVGVVYATVKRQFGA"
BASE COUNT          363 a          905 c          784 g          352 t
ORIGIN      
        1 tcagcctcga ggaggtcgtc gcccggctgc gcgcgctgat gcgacgcact gccgtgctca
       61 ccgacgacgg gtcctcgatg ctggtcgtcg gcgatctcac gatggacgag gacagccacg
      121 aggtcacccg gtccggtgac cagattcagc tgaccgccac ggagttcgag ctcctgcgct
      181 atctcatgcg caaccccaag cgagtgctgt ccaaggcgca gatcctggac cgggtctgga
      241 actacgactt cggtggacag gccaacgtgg tcgagctgta catctcctat ctgcgcaaga
      301 aggtcgacgc gggacgtgac ccgatgatcc acacgatgcg cggcgtgggg tacgtcctca
      361 agccggcacc atgagccagg cccccacgaa tcgcgtccgc gacggcctgc ggccttcgcg
      421 ctggtcactc accaccaagc tcgtcgccgc ggtcgtcgga ctgttccttg ccgtcacgct
      481 gacgaccgcc gcgctgacgg tggtgctgct ccaccagcac ctcgtccagc agctcgacca
      541 ggacgtccag gcgactgttc tgcgtgccgg cggtggaccc cggggacccg gcgacggcgg
      601 aggccccggc ggtggggtca caccccccgg gggcctcggc gagtcgctgc gcctgatcat
      661 cgccccggac ggcaccacga ccagtcacgt cgagcatcag cgcacgccca cgaccctgac
      721 gggagcacag atcgcgcagc tcaacgctgc gggcatcggc cagaccccca agacggtcga
      781 cgtcggcggc ctgggcccgt accgggtcgc ggccatgcgg gaggccgacg gcgacctcgt
      841 catcgccggg ctgcccctgg ccggcgtgac cgagacggtc agccagacga tcatcctcgt
      901 caccggtggc accatcgtcg gcttcatcct cgtgacggtc ggcggcctgt ggctggtgcg
      961 gcgcaacctc gcacccctgc agcgggtggc ccacaccgcg acccaggtcg ccaagctccg
     1021 gctcgacacc gggaacgtgg cgctcgccca acgggtcgcc gccgccgacg ccgacccgta
     1081 caccgaggtc ggccaggtcg gcctcgccct gaacaacatg ctggacaacg tggaaggcgc
     1141 cttgcaagcc cgccacgagt cggagctgag ggtgcgccag ttcgtcgcgg acgcctccca
     1201 cgagctgcgc acgcccctgg cgtccattcg cgggtatgcc gagctgtccc gtcgcgaacg
     1261 tgagccagtg cccccgtcga tcacccatgc gctgacccgc gtcgagtccg aggcgctgcg
     1321 gatgcagggt ctggtcgagg acctgctgct cctggcgcgc ctggatgccg ggcgaccgct
     1381 cgaccgcgaa cccgtcgacc tgtccctgct ggcgatggac gcggtcagcg acgcgcatgc
     1441 tgccgcgccc gaccaccgct gggagctcga cctgcccgac gagccgatcg aggtgagcgg
     1501 cgaccacgcc cggctgcacc aggtcgtcgc caacctgctc gcgaacgccc gcacccacac
     1561 tccacccggc acgcgggtca cgactgcgat caaggccgaa gggcagtggg tccgggtcag
     1621 cgtgaccgat gatggccccg gggtaccaaa gtcgttgcag cgcaacgttt tccaacggtt
     1681 cacccgcggg gacgactcgc gcaaccgggc cgctgggtcc acgggtctcg gcctgagcat
     1741 cgtcgacgct gtcgccaggt cccacggcgg gacggtggag ctcaagagcg accccggcga
     1801 caccacgttc accgtgcttc tgccggtcgg ctgacgggct gtccggctca acaccgggct
     1861 catcaccggg ctcatcaccg ggcctcaggg gtgtcacagg gaccccacag cgccgggctc
     1921 gacggtggtg gatatggaca cgatcaccct cccccacacc gcgacagcca gcgtgccggc
     1981 cacgaccgct gccccgccag acctcaccgc ctcggcccct gcgacccagc cgcccgcctc
     2041 ccgggtgcag cggctgtggc gcggcccgca ggatgacccc tcttgggccc gccccgcact
     2101 gctgggcctg ctcctggcca cggcagtgct gtacttctac aacctcacct cgagcggcta
     2161 cgccaactcc ttctactcgg cggcggtcca ggcgggcagc gccagctgga aggccttcct
     2221 ctacgggtcc tccgatgcgg gcaactccat caccgtcgac aagccgcctg cctcgctctg
     2281 gctcatggcg ctgtcagtac gggcccttgg gctgagctcg ttcagcatcc tcctgcccga
     2341 ggtgctcatg ggcgtggcca ccgtgggcgt cgtttatgcc acggtcaagc gtcagttcgg
     2401 cgcg
//
LOCUS       DASYFY010000419         4353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1396846, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000419 DASYFY010000000
VERSION     DASYFY010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4353
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1396846"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1223
                     /locus_tag="VGN19_08335"
     CDS             <1..1223
                     /locus_tag="VGN19_08335"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEV7195934.1"
                     /translation="AWNVPSPAKQQLVVFIVVMAVLLVRVGALRKGARTGEQSTWQHG
                     AATTMRTVDQLRRRVSASGVWLIVVVSVLLPFVLSVGNNVLFSQICIYAVVALSLTML
                     TGWGGQVSLGQFGLVAVGALVAVHLGSSLPLPVVMLYGGAVTALVAIIVGLPALRMPG
                     LFLAVTTLAFAIFMQNAVLATPCITVPGINKTLCTGLPNPAYTFIGRPSLFGISLSSQ
                     RAFAWFSLGVLLLSVYMVRIWRDKGVARRLVAVRDNELGAAAMGIPVLRTKLLAFGLS
                     GFMAGYAGVCFAFATQQLNNTDITFDPTTSFVIISMVVIGGLGSISGAILGALYLEGL
                     PAIFGSNPTIQFITSGLGLIAFILYLPGGLAELLRRFGDLVAVGIRSAQERLASRGAD
                     PPVASTLAADGAER"
     gene            1220..2092
                     /locus_tag="VGN19_08340"
     CDS             1220..2092
                     /locus_tag="VGN19_08340"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195935.1"
                     /translation="MTAVAPNATSAPSGHPAHLSVDEVSVRFGGVHALAGVTFDAEPG
                     AIVGLIGANGSGKTTTLDVISGLVTPQSGRVRIDGVDLAEYLPEERLGVGMVRSFQDC
                     RLFPELTVLDVLLLSEDARHEVAVLPTTLRLPWARRAERRKLEAVDQVLTAFGLERFR
                     HHRTAELSTGTRRVVDLASIVLARPRLLLLDEPTAGIAQREAEAFIPLLRRLHQVADT
                     TIILVEHDVPLVFELCSTVVVMELGSVVAAGAPEAIRADPKALAAYLGASDEALQASG
                     PIGEDGGTDRHEGA"
     gene            2095..3648
                     /locus_tag="VGN19_08345"
     CDS             2095..3648
                     /locus_tag="VGN19_08345"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7195936.1"
                     /translation="MEASMEMSAQRRARNPLAPLGRSWRRLRRRPLAMQLRTAAIVIA
                     IVVALVAWLMLAPSGTPGGAGSAGAAEVASAVTTGGTPVSAASTSTRGVSGNSINVVF
                     PVVAVNSEAGRFGFATDKEFNEQTASINLYVNQINNAGGVNGRKINPMIVSFDPANNA
                     NMQSLCQQWTQGNPPVFAIVDGIGTWTGDNQLCVTEQGHTPLISAWSTTTNWTQMGSP
                     YLWWTGPDESPVLAATVQWGLSSGRLGHGKKVGVVVSDQAGDQAALNSYLLPDLRQAG
                     ITPQVATVAGNPDQTASTSSQAQLAVERFKAAGVQSVFPLLPENAFFPYLAAENAQQF
                     YPKLLLSDYQSTIEIALGLIPVPYEAALNGQEGVTTETLGGFDDARPQSQGGYDPGVR
                     SCFQTWHSYHPKPIPGTETYYIEEQGPIQAWCGSIRLFATAAKNAGTNLNRKSFAEAM
                     SKITNYPGTLAPVWTFGATKFYGPTQYQVVKIHNNVPPSSQCKLKTNHKPQGTCWVTV
                     QPFKPLPAA"
     gene            complement(3679..>4353)
                     /locus_tag="VGN19_08350"
     CDS             complement(3679..>4353)
                     /locus_tag="VGN19_08350"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7195937.1"
                     /translation="EVVGVLTDVSDAASVRNLREKALDRFGAVHLVHNNAGVGLGGPI
                     WEFSEEDWRWILGVNLLGVVHGIATFVPLLLEQGEGHVVNTASIAGLATAPFLGPYNA
                     TKQAVVAVSETLFKDLQSVGAPTGVGVSVLCPGFVRTRIAESDRNRPAWASEREAEGA
                     EELRGAVQSMVDGGIPPAVVADRVIDAVRTNTFYVLTHPELTPALQTRFDDIVQGRPP
                     SPTAIF"
BASE COUNT          673 a         1513 c         1472 g          695 t
ORIGIN      
        1 tggcgtggaa cgtcccgtca ccggccaagc agcagctcgt cgtcttcatc gtggtcatgg
       61 ccgtcctcct ggtgcgggtc ggcgctctgc gcaagggggc caggaccgga gagcagagca
      121 cctggcagca cggtgcggcg acgacgatgc ggacggtcga ccagctgcgc cgccgggtct
      181 cggcgtccgg ggtctggctg atcgtcgtgg tctccgtcct gttgcccttc gtcctctcgg
      241 tcggcaacaa cgtcctgttc agccagatct gcatctatgc cgtcgtcgcc ctgtccctga
      301 ccatgctcac ggggtggggg ggccaggtgt cgctcgggca gttcgggctg gtggcggtgg
      361 gagcgctggt cgcggtccac ctggggagct cgctcccgtt gcccgtcgtg atgctctacg
      421 gaggagcggt gaccgcgctg gtcgcgatca tcgtcggctt gcccgcactg cgcatgccgg
      481 ggctcttcct cgccgtcacg acgctggcgt tcgccatctt catgcagaac gcggtgctgg
      541 ccactccctg catcaccgtg ccggggatca acaagacgct gtgcacgggg ctgccgaacc
      601 cggcgtacac attcatcggc cgtccctcgt tgttcggcat cagcttgagc tcgcagcggg
      661 ccttcgcctg gttctccctc ggcgtcctgt tgttgtcggt ctacatggtg cggatctggc
      721 gcgacaaggg cgtggcgcgg cgcctggtcg cggtacgcga caacgagctc ggcgccgctg
      781 cgatgggcat cccggtcctg cgcacgaagc tcctggcgtt cgggctgtcc ggattcatgg
      841 ccgggtacgc cggtgtctgc ttcgccttcg ccacccagca gctgaacaac accgacatca
      901 cgttcgaccc gacgacgtcg ttcgtcatca tctccatggt ggtcatcggc ggcctgggct
      961 ccatctctgg ggcgatcctc ggtgcgctct atctcgaggg cctgccggcg atcttcggct
     1021 ccaacccgac gatccagttc atcacgagcg gcctgggtct catcgccttc atcctgtacc
     1081 tgcccggggg cctggccgaa ttgctgcgcc gcttcggcga cctcgtggcg gtggggatcc
     1141 ggtccgcgca ggaacgactc gcgtcgcgtg gcgccgatcc cccggtggcg tccacgttgg
     1201 ccgccgacgg agccgagcga tgaccgccgt cgccccgaac gccacatccg ccccgtcggg
     1261 tcacccggcc cacctcagcg tcgacgaggt gagcgtgcga ttcggcggcg tgcacgcgct
     1321 cgccggggtg accttcgacg ccgagccggg tgcgatcgtc ggcctcatcg gggccaacgg
     1381 ctcgggaaag acgacgacgc tcgacgtcat ctccggattg gtcacgccgc agtcgggccg
     1441 tgtgcgcatc gacggcgtcg acttggccga gtatctcccc gaggagcgcc tcggcgtcgg
     1501 gatggtccgg tcctttcagg actgccgtct cttccccgag ctgacggtgc tcgacgtgct
     1561 gctcctcagc gaggacgcgc gccacgaggt cgccgtgctc cccacgacgc tccgcctgcc
     1621 ctgggcccgc cgggcggagc gacgcaagct cgaggcggtc gaccaggtgc tgaccgcctt
     1681 cggcctcgaa cgcttccgcc accaccgcac ggcggagctg tccaccggga cgcggcgcgt
     1741 cgtggacctg gcctccatcg tgttggcccg gccccggctg ctcctcctcg acgagccgac
     1801 ggcgggtatc gcgcagcgcg aggccgaagc gttcatcccc ttgctgcggc ggctccacca
     1861 ggttgccgac accacgatca tcttggtgga gcacgacgtg cccctcgtct tcgagctctg
     1921 ctcgaccgtc gtcgtcatgg agctggggag cgtggtggcc gcgggagcac cggaagcgat
     1981 ccgcgctgac ccgaaggccc tggccgccta ccttggtgcg agcgacgagg ccctgcaggc
     2041 ctcgggaccg atcggggagg acggcggcac ggaccgccat gaaggagcgt gaggatggaa
     2101 gcgagcatgg aaatgtctgc gcagcggagg gcgcgcaacc ccctggcgcc gttgggccgt
     2161 tcctggcggc gcctgcgccg tcgcccgctg gcgatgcaat tgcgcaccgc cgccatcgtc
     2221 atcgccatcg tcgtcgcgct ggtggcctgg ctcatgctcg cgccctccgg cacgcccggc
     2281 ggcgcgggga gcgcgggtgc ggccgaagtc gccagtgctg tcacgaccgg cggcacgccg
     2341 gtcagcgcgg cgagcacgag cacacgcggg gtcagcggga acagcatcaa cgtcgtgttc
     2401 cccgtcgttg cggtcaacag cgaggcgggt cgcttcggat tcgcgacgga caaggagttc
     2461 aacgagcaga cggcgtccat caacctctac gtcaaccaga tcaacaacgc cgggggcgtc
     2521 aacggtcgca agatcaaccc gatgatcgtc agcttcgatc cggccaacaa cgccaatatg
     2581 cagtcgctct gccagcaatg gacgcaaggg aacccaccgg tgttcgccat cgtcgacggc
     2641 atcgggacgt ggacagggga caaccagctc tgcgtcaccg agcagggcca caccccgctg
     2701 atcagcgcgt ggtccaccac cacgaactgg acgcagatgg gctccccgta cctgtggtgg
     2761 acagggccgg acgagtcgcc ggtgctggcg gccaccgtgc agtggggcct gagctcgggc
     2821 cgcctgggcc acggcaagaa ggtgggagtc gtcgtctcgg accaggcagg cgaccaggcg
     2881 gcgctcaatt cctacctcct acccgacctc aggcaggccg ggatcacgcc tcaggtcgcg
     2941 accgtcgccg gcaacccgga ccagacggcc agcaccagct cgcaagcgca actcgccgtg
     3001 gagcgcttca aggcggcggg cgtgcagtcc gtcttcccgc tgttaccgga gaacgcgttc
     3061 ttcccctacc tggcggcaga gaacgcacag cagttctacc cgaaacttct gttgagcgac
     3121 taccagtcca ccatcgagat cgcgctcgga ctgattcccg tgccctacga ggccgcgctg
     3181 aacggccagg agggcgtcac gaccgagacc ctcggtggtt tcgacgacgc gcggccccag
     3241 agccagggcg gatacgaccc gggggtgcga tcgtgcttcc agacgtggca ctcctaccac
     3301 ccgaagccca tcccgggcac cgagacctat tacatcgagg agcaaggccc cattcaggcc
     3361 tggtgcggct ccatccggct gttcgcaacg gcggccaaga acgcggggac caacctgaac
     3421 cggaagagct tcgccgaggc gatgtcgaag atcaccaact accctggcac cctggcaccg
     3481 gtgtggacct tcggagcgac caagttctac gggccgaccc agtaccaggt cgtcaagatc
     3541 cacaacaacg tgccgccgtc atcgcagtgc aagctcaaga cgaaccacaa gccgcagggc
     3601 acctgctggg tgacggtgca gccgttcaaa ccgctgccgg cggcctgaca gccaggtcgc
     3661 ctgccgaggg cgtcggactc agaagatggc ggtcggactg ggcgggcgtc cctgcacgat
     3721 gtcgtcgaag cgggtctgga gcgcaggggt cagctcaggg tgggtgagga cgtagaaggt
     3781 gttcgtgcgg acggcgtcga tgactcggtc ggcgacgacc gccggtggga ttcccccgtc
     3841 gaccatgctc tggacggcgc cccgcaactc ctccgcgccc tcggcctctc gttcagacgc
     3901 ccaagcgggc cggttgcgat cggactcggc gatgcgggtc cgcacgaatc cggggcacag
     3961 gaccgagacc ccgacgcccg tcggcgcacc cacggactgc aggtccttga acagcgtctc
     4021 ggagacggcg acgacggctt gcttcgtggc gttgtagggc ccgagaaagg gggccgtggc
     4081 aagcccggcg atcgatgccg tgttcaccac gtgtccctcg ccctgctcga gcaggagcgg
     4141 cacgaaggtg gcgataccgt ggaccacccc caggaggttg accccgagga tccagcgcca
     4201 gtcctcctcg ctgaactccc agatgggacc gccgagcccg acgccggcgt tgttgtgcac
     4261 gaggtggacc gccccgaagc gatcgagggc cttctcgcgg aggtttcgca ccgacgcagc
     4321 atcggagacg tcggtgagca cgcccacgac ctc
//
LOCUS       DASYFY010000420         4506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_502433, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000420 DASYFY010000000
VERSION     DASYFY010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4506
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502433"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(464..1042)
                     /locus_tag="VGN19_08355"
     CDS             complement(464..1042)
                     /locus_tag="VGN19_08355"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HEV7195938.1"
                     /translation="MTGRRRGRVWLAAGYLGLGGFLALEATTRQPGEASSLDASGDDD
                     GTTRLILNAYGVALAVPALGLVVKSSRLPDWVRPVGLALEVAGLGLRWWSMSTLKASY
                     SRTLRSAQQGTLIDDGPYALVRHPGYLGSLVTWVGFSLSSASAPTVAIVTGLLGPAYW
                     RRIAAEEELLVRDLPGYAEYSRRTWRLIPRIW"
     gene            complement(1047..1223)
                     /locus_tag="VGN19_08360"
     CDS             complement(1047..1223)
                     /locus_tag="VGN19_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195939.1"
                     /translation="MNDLGPGARTYLRGAAELTAVITLVREIPNRSAIRAFATPSGGR
                     PPQRQMRTTSWSVG"
     gene            complement(1635..1876)
                     /locus_tag="VGN19_08365"
                     /pseudo
     CDS             complement(1635..1876)
                     /locus_tag="VGN19_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007053875.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2100..3947)
                     /locus_tag="VGN19_08370"
     CDS             complement(2100..3947)
                     /locus_tag="VGN19_08370"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEV7195940.1"
                     /translation="MGRLLLVARLGLRDLRHRPAQAVLLLLAIAAGTATLTLGLALQG
                     TTDDPYARTRAATNGPDVVATMLTDGSNAPGPATTARPGDTSGKPADGQVDTTALQQL
                     ASAAGVVANSGPFPVAWTLLRDGGTTGSAEVEGRDTTTATVDQPHLMQGAWVRPGGVV
                     VEAGFASALDIHLGDALTLGGTTVRVLGVAITAAIPAYPDTCAQAEGCFLTNGLAEHN
                     PGVVWATRADATRIAGTDGPQAYFLNLTLSNPAAAAVFAGQYGADTSGSAPALLTWQQ
                     IQAANAQTLTEVQQILVLGSWLLALLAVASVAVLAGGRLVEQTRRVGLVKAAGGTPGF
                     VAVVLLVEHVVVALAAAVLGLVFGWLTAPLVDRPSAGLLGAASAPAMRTSTVLYAIAL
                     AVGVAVAATTVPVVRATRQSTVAALNDAARHPHRREAVIRLSANLPVTLLLGIRLATR
                     RPRRLLLSVLSIAVTISGLVIVMIFHATKTSGLIDPRVNVATTIISVMLVLLAAVNAV
                     FVAWTTALDARHPAALARALGATPNQITTGLSAAQLFPTLAGALLGILAGVGTYYAAK
                     TGGDVVLPSALSLLALLVATLLVIAALTALPTRIANRTPAIEALQAETT"
     gene            complement(3953..>4506)
                     /locus_tag="VGN19_08375"
     CDS             complement(3953..>4506)
                     /locus_tag="VGN19_08375"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195941.1"
                     /translation="SSGQVWLSERHVDGLPERELARLRRLEVGFVFQAFHLMDELTAQ
                     ENVELPVLLAGATPRQARQRARQLLEQVGVADRANHLPTGLSGGQRQRVAIARALANE
                     PQLVLADEPTGNLDSAATVEVLRLFDALHAAGQTLIIATHDERVAATADRLIAMRDGV
                     FVDETRLVGGRQGTLADLAGLDG"
BASE COUNT          654 a         1498 c         1664 g          690 t
ORIGIN      
        1 cctcgtcaac gcgaccgaca gggctccggt caggccaacc cggtcggcca gcagccttgt
       61 cgccacgctt cccgcatggg cgaccacccc ggtcccgtcg gccgtgactg acaacccgga
      121 cgaccacgtc atatgcttca cctgcgaagt gccttccgct cgagcatgct gaaccgtaga
      181 gaagtccagt atctcgttgc gcgacaggca ctttcgcgca ttcgcggccc gtgtcagatc
      241 acgacacaag aacgatccgg gctagggcca cgagcacgca tcggatgtgg gctggggttc
      301 agcaccagac ctttgtctgg gcgttcaagg aacatgtgtc acttcgccca ctatgacgcg
      361 ggcgaccggc gccgcaaacg cccgctcctg ccgcgttgag ggcggctacg ctcgcccgct
      421 cgtgccgcgt tgggggcgga cccccgacca tcagcggcga gggtcaccag attctcggaa
      481 tgaggcgcca ggtacgacgc gagtactccg catagccggg gagatcccgc acgagaagtt
      541 cctcttcggc ggcgatccgg cgccagtacg ccgggccgag caggccggtc acgatggcga
      601 cggtgggtgc actcgctgag ctcagggaga acccgaccca ggtcaccagc gacccgaggt
      661 atcccgggtg gcgcaccaac gcgtacgggc cgtcgtcgat gagagtgcct tgctgcgcgc
      721 tgcgcaacgt acgggagtac gacgccttca acgttgacat ggaccaccac cgcaggccca
      781 gtccggcgac ttccaacgcc agaccgacag ggcgaaccca gtccgggagc cgggaggact
      841 tgaccaccaa tccgagggca ggaaccgcca aagcgacacc gtaggcgttg aggatcagcc
      901 gtgtcgtgcc gtcgtcgtcg cccgacgcgt caaggctgga tgcctcgcca ggctgtcggg
      961 tcgttgcttc caacgccaga aagccaccca agccgagata tcccgctgcg agccagaccc
     1021 gcccgcgtcg acgacctgtc actggctcac cctactgacc aggaggtggt ccgcatctgc
     1081 cgctgtgggg gacggccgcc cgatggggtg gcgaaggcgc ggatcgcgga gcggttgggg
     1141 atctcgcgga ccagggtgat cacggcggtg agctcggccg cgccgcggag gtatgtgcgg
     1201 gctcctgggc cgaggtcgtt caccgtgttt gagccggcgg tgcgggcggt gctggcggag
     1261 gtccccggac atgccgggcg cggtgctggc tgagcgggtt ggctggacgg gttcgatccg
     1321 gtggttccgc gacgatgtga agcggctgcg tcccgagcag cgctcgatcg acccggccga
     1381 ccggatcgtg tgcaggccgg cgacgccgcc gagtgcgacg tgtggttcgc gccccgcaag
     1441 gtcccgttgg gggacggcac tgccaggctg ctgccggtgt tggtggtcac ggccgcgcat
     1501 tcgcggttca tgaccgcgcg gatgataccg acccgcaatg gccgaggacc tgctgctgag
     1561 ctcgtgggag ctgatccagc agctgggggc gcgtcccgcg gtgcctgatc tggacaacga
     1621 gcctggcatc ggccgctgcc atcccggtcc ctggggacct cggccgcgac cggtccggca
     1681 ttgtcggtca gcgccgtctt ggctagggtc cgttccgaga gttggccccg ttgcggccct
     1741 ccacggcgtg cttgttgtag ccgacgtggt cggtcatctc ctcctcgagg gcagcctcga
     1801 tgacttgttt ggtgatcgcc ttgagcagcc cgtccgggcc tgtctcctca tcacccctgg
     1861 cgtgagcggc cttgaccagc tcgaaccgcc gcgcggttca ccctctgcgg gcgtgagcgt
     1921 cttcttcgct gccctccaca gtggcctcac gccaaccagt gtgtcggtca tcctcagacc
     1981 gttcccgctg aaccggtcag cgcgttgggc cggtggcacc ggtggccgga cagcctgaac
     2041 cgcgacgacc gggcttctgt tggtccgagc gacgcaggat gggtgtgggc tgccgttggt
     2101 caggtggtct cggcctggag ggcctcgatg gcgggggtgc ggttggcgat ccgggtcggc
     2161 agggcggtga gtgcggcgat cacgagcagc gtggcgacga gcagggcgag cagcgacaga
     2221 gcggagggaa gcacgacgtc gccaccggtc ttggcggcgt agtacgtgcc cacgccggcc
     2281 aggatgccga gcaacgctcc ggccagggtg gggaatagtt gggccgcgga caggccggtg
     2341 gtgatctggt tcggggtggc tccgagggca cgtgccagag cggccgggtg ccgcgcgtcg
     2401 agcgcggtgg tccaggcgac gaagacggcg ttgacggcag ccagaaggac gagcatcacc
     2461 gagatgatgg tggtggccac gttcacccgg gggtcgatga gcccgcttgt cttggtggcg
     2521 tggaagatca tcacgatgac cagcccgctg atggtgacgg cgatgctgag gacgctgagc
     2581 agcagccggc gtggccggcg cgtggcgagc cggatcccga ggaggagggt gaccgggagg
     2641 ttcgccgaga ggcggatcac tgcttctcga cgatgcgggt ggcgggcagc gtcgttgagc
     2701 gctgcgacgg tgctctgtcg ggtcgctcga acgaccggca ccgttgtcgc ggccaccgcg
     2761 acccccaccg ccagtgcgat ggcgtagagc accgtggacg tcctcattgc cggggcactc
     2821 gcggcgccca acaggccggc gctggggcgg tcgaccagtg gggcggtgag ccacccgaag
     2881 acgagcccga gcacggctgc ggcgagggcg accacgacgt gttcgacgag gaggacgacg
     2941 gcaacgaacc ccggcgttcc accggcggcc ttcaccaagc cgacccgccg tgtctgctcg
     3001 accaggcgcc caccggcgag gacggcgacg ctcgcgacgg caagaagtgc gagcagccag
     3061 ctgcccagca cgaggatctg ctgaacctcc gtcagggttt gggcgttcgc cgcttggatc
     3121 tgttgccagg tcagaagcgc cggggcggag ccggacgtgt ctgcgccgta ctggccggcg
     3181 aacaccgcgg cggcggcggg attgctgagc gtgaggttca agaagtaggc ctggggacca
     3241 tcggtcccgg cgatacgggt ggcgtcggcc cgggtggccc acaccacccc gggattgtgc
     3301 tcggcgagcc cgttggtgag gaagcatcct tcggcctggg cgcaggtgtc ggggtatgca
     3361 gggatcgcgg cggtgatggc aactcccagc acccggaccg tggtgccgcc gagggtcagc
     3421 gcgtcgccga ggtggatgtc gagcgcgctg gcgaacccgg cctcgacgac aacgccgccc
     3481 ggtcggaccc aggcgccctg catcaggtgc ggctggtcga ccgtcgcggt cgtggtgtct
     3541 cggccctcga cctccgcgct gcccgttgtc cccccgtcac gcagcagtgt ccacgccacg
     3601 gggaacggcc cactgttcgc gaccacgccc gcggcgctgg ccagctgctg cagcgccgtg
     3661 gtgtcgacct gaccgtcggc tggcttcccg ctcgtgtcac ctgggcgtgc cgtggtggcc
     3721 gggccgggag cgttcgagcc gtcggtgagc atggtcgcca cgacgtccgg cccgttggtt
     3781 gccgcccggg tgcgggcgta cgggtcgtcc gtcgtgccct gcagagccag ccccagggtc
     3841 agggtcgccg tcccggccgc gatcgcgagc aggagaagca ccgcctgggc gggacggtgc
     3901 cgcaggtcgc gcagaccgag gcgtgcgacg aggagcagcc ggcccatcgg gttcacccgt
     3961 ccagtccggc gagatcggcg agggttccct gtctgccgcc gaccaggcgg gtctcgtcga
     4021 cgaacacacc gtcgcgcatc gcgatcagcc ggtcggccgt ggcggcgacc cgctcgtcgt
     4081 gtgtggcgat gatcagcgtc tggccggctg cgtgcagcgc gtcgaacagg cggagcacct
     4141 caacggttgc cgcgctgtcg aggttgccgg ttggctcatc cgcgagcacg agttgtggct
     4201 cgttggccag cgcccgggcg atcgcgaccc gctggcgttg gccccccgac aggcccgtgg
     4261 gcagatggtt ggcccggtcg gctacgccca cctgctcgag cagctgtctc gcgcgctggc
     4321 gggcctgccg aggggtggcc ccggcgagga gcacggggag ctcgacgttc tcctgcgccg
     4381 tcagctcgtc catgaggtgg aacgcctgga agacgaagcc gacctcgagc cgccgcagcc
     4441 gggccagctc gcgctcgggc agcccgtcga cgtgcctctc ggacagccac acctgcccgg
     4501 agctcg
//
LOCUS       DASYFY010000421         6694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1659221, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000421 DASYFY010000000
VERSION     DASYFY010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6694
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1659221"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..548)
                     /locus_tag="VGN19_08380"
     CDS             complement(3..548)
                     /locus_tag="VGN19_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigE family RNA polymerase sigma factor"
                     /protein_id="HEV7195942.1"
                     /translation="MSEMIALPRSMASPSFEDYVAARGVSLVHTAWLLTGDYQRAEDL
                     VQTALGKTWPRWGQIVEVGEGSYDAYVRKVMMTTYISWWRRRWTAEYPTETVPERATD
                     IPEGAEAAVDRRHDLLNALSTLPRGQRAVVVLRYFHDLTEGQTAEALGCSVGTVKSQA
                     ARALATLRTSPALSEEGGRDV"
     gene            896..1627
                     /locus_tag="VGN19_08385"
     CDS             896..1627
                     /locus_tag="VGN19_08385"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEV7195943.1"
                     /translation="MLVAPLALVATIVALAPSTASATGLGYALSYTSLPNGTKPVVRW
                     NPCQSAITYKVNLADVPTAMRPTILSETQATVGRLAAYTGMAFSYRGSTTEVPHVGSM
                     PTQSAELVIAYTTPAKTNYYLWGSTVGEGGLYYSWSSVTVSGRTTYSEAAQRGFVVID
                     TPQMLAQLSGGFGAGTRRANLLMHELGHAVGLQHVTDASQAMYPSLMSSAPNLGNWGD
                     RAGLSRVGRSAGCIDTSHLRLADLR"
     gene            1756..5790
                     /locus_tag="VGN19_08390"
     CDS             1756..5790
                     /locus_tag="VGN19_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HEV7195944.1"
                     /translation="MTEPNTETRPAPQPSDADPRASRVAQAVKTWQRHLVDLGGRNTL
                     LWYRDLPSGTLDLTTAHPGGLAMLLAGRPTRLSDLVREPAALDEARRRARTIRAKSLE
                     LSEERGIAAGFIAIGMATWSVRGASRPPAAPVLLRSCVLKPTGAAREDFDLDLGQDVE
                     LNPVLEHYLRSEQGLEIDSGVLEDLATESGSFDPYPVYAELTRLCASVSDFSVSPRLV
                     VGTFSYAKLPMVADLAAQGDSLANHDVIAALAGDPGALRTVRSTVPDSPADADPGREL
                     LILDADSTQQAAIDVVRSGAHLVIKGPPGTGKSQTIANLVACLAGEGKRVLFVAEKRA
                     AIDAVLSRLDRVGLSDLVLDAYDGASNRRRIAQEFGAALDRGQQTVEPDTSDLERTLV
                     QRRAALVEHAEALHAVREPWGVSAYQAQEAIATLSAATHPPTSRVRLRGEQLATLDRR
                     SVQDLGRALTEAASLGAWSTDQGSDPWFGARITTAEEAVRARDITTAFSQGGLQALEQ
                     TMRDVFAEVSLPDATRISDWSGVLDTVGRVRDTLEVFRPEVFDIPLGELVAATGGKQY
                     REANGVALGWFARWRLRRQTRSLLRPGPPPADLHAALVEAQKQRLAWQQLAGAGGRPE
                     IPVDLDRARAAFESVATDLGWLGERLAPTAAGGELMSSPLEALHQRMTDLAARPERLT
                     ILPQVTAALDALRAGGMGPLVDDLARRGVQPEDVAREFDFVWWTSFVEDLIVRDPSYG
                     AHDGAQLLRTAREYVEADHEHLRASAERVRAGAGRRLREMLADHPEQEAQVRREAGKA
                     RRHRPLRDLLPLAGDVLTAAKPAWAMSPLVVASVLPPGKWFDVVIFDEASQIPPAQAV
                     SAISRATQVVVAGDERQLPPTSFFTSSVDDDASTEGEAFTDGFESVLDVLTAALPTRR
                     LSWHYRSLDQRLVAFANREMYDGTLVTFPGTSRESVVRLEVVDGSGIVQHGEEAIEST
                     EAEVVRVVELVLEHARTRPQESLGVIALGIKHANLLDDAVRRALTDAEGVGDFFDEDH
                     PERFFVKNLERVQGDERDAVILSVGYGKTPHGRVLHRFGPLNLEGGERRLNVAITRAR
                     RRMTVVSSLVADDLDPSRLKARGAIMFRDFLAYAADGQLPNHDEEPATSPLVGPSAGG
                     VADPLRGEFAARLRGSGLVVHEAYGGSGHPVDLAVEDPEHPGRVLVAVESDGAAYAAM
                     RSSRDRDRLRAEQLTRLGWTHVRVWSTDLFRDPARDVARVHAAVARAASGGSGPTSPA
                     EAAEAAEATGAAEATGAPESVAGDFAPNAGEGARGRRLRGRRVVRPAEQTKDDTDVGW
                     GERRNDDEHDRWLQEQRPPHWGTD"
     gene            complement(5894..6256)
                     /gene="mscL"
                     /locus_tag="VGN19_08395"
     CDS             complement(5894..6256)
                     /gene="mscL"
                     /locus_tag="VGN19_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEV7195945.1"
                     /translation="MKGFKDFVMRGNLVELAVAFVIGAAFATVVKAFTDMLLSLIGKV
                     GGKPNFNNITPGGVPLGAFLTALVAFLIVAAVVYFFVVQPYEAAKARFAKAPEVDAAP
                     DENTILLREIRDALVRRA"
     gene            complement(6361..>6694)
                     /locus_tag="VGN19_08400"
     CDS             complement(6361..>6694)
                     /locus_tag="VGN19_08400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195946.1"
                     /translation="GALLAGQPAGTVAVHVVLGDPGTTDMLGPGDRVDLVGPQGTVAR
                     GVVVLRTDQVSDGPGAGLLPGQRSSGASASGTGVVIAAGHDTAEAIARLPLDALGRST
                     LTVLLRPG"
BASE COUNT         1029 a         2394 c         2281 g          990 t
ORIGIN      
        1 gttcagacat cacggccccc ctcttcgctc agagctggac tggtgcgcaa agtcgccagg
       61 gctcgagcgg cctggctctt gaccgtgccg acgctgcaac cgagcgcctc ggcggtctgg
      121 ccctcagtga gatcgtggaa gtaccggagc acgacaacgg cccgctggcc gcgggggagg
      181 gttgacagcg cgttgaggag atcatggcgc cgatccaccg ccgcctcagc gccctcgggg
      241 atgtcggtgg cgcgttcggg cacggtttcg gtgggatact cggccgtcca gcgccgacgc
      301 caccaggaga tgtacgtcgt catcatgacc ttgcgtacgt aggcgtcgta ggaaccctcc
      361 ccgacctcca cgatctgacc ccaccgcggc caggtcttgc ccagcgcagt ctgcacgaga
      421 tcctcggccc gctggtagtc gccggtgagc aaccaggccg tgtggaccag cgacacgccc
      481 cgtgccgcga cgtagtcctc gaagctgggg ctcgccatgg aacggggtaa cgcgatcatc
      541 tcgctcatac caaccacctc cgccctctgg aggtaaaagc ggtttggccc cccaattggt
      601 tgtcaggccc agcatctgcc cgcccagatc tttctggcgc ccgcccgcgc gcctctccgg
      661 aatgccctcg tcccaccagt atcgtcatgg tcgctcgatg gttgtaggga catcgtgcgt
      721 cgttctgtgg cctcttacgt tcgtccgaac ttggctcgtc cattcggtcg attccgcgtc
      781 ctttggtgac agttcgcttc gatccgcttc gatactcgat ggcagcggct gctcagcatc
      841 cgcgtccccc caccccacga ggacgactat gcgaaagccc ctacgccgac tcgccgtgct
      901 tgtggccccc ttggcgctcg tcgcgaccat cgtcgcgctc gccccgagca ccgccagcgc
      961 cacggggctg ggctacgccc tgtcgtacac atccctgccc aacggcacca agcccgtcgt
     1021 gcggtggaac ccctgtcagt ccgccatcac ctacaaggtc aacctggccg acgtcccgac
     1081 cgcgatgcgt cccaccatcc tcagtgagac gcaggccacc gtcggcaggc tcgcggcata
     1141 caccggcatg gcgttctcgt accgcggatc caccaccgag gtgccccacg tcggctcgat
     1201 gcccacccag agtgccgagc tggtcatcgc gtacaccacc cctgccaaga ccaactacta
     1261 cctctggggc tcgaccgttg gtgaaggcgg cctttactac tcctggtcga gcgtgaccgt
     1321 cagtggtcgc acgacgtact cggaggcggc acaacgcggg ttcgtcgtga tcgacacccc
     1381 gcagatgctc gcccagctca gcggggggtt cggcgcgggc acgcggcggg cgaacctgct
     1441 gatgcacgag ctcggtcacg ccgtcggcct gcagcacgtc accgacgcca gccaggcgat
     1501 gtaccccagc cttatgagct cggcgcccaa cctcgggaac tggggtgacc gcgcgggcct
     1561 gagccgcgtt ggtcgcagtg ccggttgcat cgataccagc cacctgcgcc tggccgacct
     1621 caggtagcgc cgacgccgaa cagctctcac gtaccccgag cgacgcggag agcgaacgca
     1681 accccagcgt tcagccctcg gcgtcgcttg gcgtcggtcg gccggaagga caggtgtggc
     1741 ggttagcctt ccggggtgac cgagcccaac accgagaccc gcccagcgcc gcaacccagc
     1801 gacgccgacc cgcgagccag ccgggtggcg caggccgtca agacctggca gcgccacctc
     1861 gtcgacctcg gtgggcgtaa caccctgctc tggtaccgcg acctgcccag cggcaccctg
     1921 gacctcacca cggcccaccc cggtgggctg gcgatgctgc ttgcgggtcg ccccacgcgc
     1981 ttgtcggacc tcgtgcgcga acccgctgcc ctcgacgagg cccgtcgccg cgcccgaacc
     2041 atccgcgcca agagcctgga actgtccgaa gagcggggca tcgccgctgg cttcatcgcg
     2101 atcggcatgg ccacctggag cgtgcgcggg gcctcccgcc ctccggcagc gccggtcctg
     2161 ctccgctcgt gcgtgctcaa gcccaccggc gccgcgcgcg aggacttcga cctcgacctg
     2221 ggacaggacg tcgagctcaa cccggtgctc gagcactacc tgcgctcgga gcaaggcctc
     2281 gagatcgaca gcggcgtgct ggaggacctc gccaccgaga gtggcagctt cgacccctac
     2341 cccgtgtatg ccgagctgac tcggctctgc gcgtcggtct ccgacttctc cgtctccccg
     2401 cgactggtgg tcggcacctt ctcgtacgcc aagctaccga tggtcgccga ccttgcggcg
     2461 caaggggatt cgctggccaa ccacgacgtc atcgccgcgc tcgcggggga ccccggcgcc
     2521 ctgcgcactg tgcgcagcac cgtgccggac tcgccggccg atgccgaccc agggcgcgag
     2581 ctcctcatcc tcgacgcgga ctccacccag caggcagcca tcgacgtggt ccgttcgggc
     2641 gcccacctgg tcatcaaggg gccgcccggc actggcaagt cccagaccat cgccaatctg
     2701 gtcgcctgcc tcgcagggga aggcaaacgc gtcctgttcg tcgccgagaa gcgcgcggcg
     2761 atcgacgcgg tgctctcccg cctcgaccga gtgggcctgt ccgatctggt cctggacgcg
     2821 tacgacggcg cctcgaaccg ccgccggatc gcccaggagt tcggggccgc cctcgaccgc
     2881 ggccagcaga ccgtggagcc cgacaccagc gacctcgaac ggacgctcgt ccagcgccga
     2941 gcggccctgg tggagcacgc cgaggcactc catgccgtgc gcgagccttg gggggtctcg
     3001 gcataccagg cgcaagaggc catcgccacg ctcagcgcgg ccacccaccc gccgacctcg
     3061 cgggtgcgcc tgcgcggcga gcagctggct accctcgacc gccgcagcgt gcaggacctg
     3121 ggacgcgcgc tcaccgaagc cgcgtcactt ggcgcctggt ccacggacca gggcagcgac
     3181 ccgtggttcg gcgctcgcat caccaccgcc gaggaggccg tccgggctcg cgacatcacc
     3241 acggccttca gccagggtgg tctgcaggcg ctcgagcaga ccatgcggga cgtgttcgcg
     3301 gaggtgagcc ttcccgacgc cacccggatc tcggactgga gcggggtgct ggacaccgtc
     3361 ggccgggtgc gcgacacgct cgaagtgttc cgccccgagg tcttcgacat tccgctgggc
     3421 gagctggtgg cagccaccgg cggaaagcag taccgcgaag ccaatggcgt ggcgctgggc
     3481 tggttcgcgc gctggaggct gcgccgtcaa acccgatcac tgctgcgccc aggacctccg
     3541 cccgcggacc tgcacgcggc cctggtcgaa gcgcagaagc agcggcttgc ctggcagcag
     3601 ctggccggag cgggtggtcg acccgagatc ccggtggacc tggacagggc gcgggccgcc
     3661 ttcgaatccg tcgccacgga cctcgggtgg ctgggcgagc gacttgcgcc caccgcggcg
     3721 ggcggggagc tgatgagcag cccgctcgag gccttgcacc agcggatgac cgacctcgcc
     3781 gcgcgtcccg agcggctgac gatcctgccg caggtcactg ccgctctcga tgcgctgcga
     3841 gctggcggca tgggaccgct cgtcgacgac ctcgcacgcc gcggcgtcca gccggaggac
     3901 gtcgcccgcg agttcgactt cgtgtggtgg acctcgttcg tggaggacct catagtgcgg
     3961 gacccgagct acggcgccca cgacggtgcc cagctcctgc gcaccgcgcg ggagtacgtg
     4021 gaggcggacc acgagcatct gcgcgccagc gccgaacgag tccgggcggg agctggacgc
     4081 cggttgcgcg agatgctggc cgaccacccc gaacaggagg ctcaggttcg tcgagaggcg
     4141 ggcaaggcaa ggcgtcatcg gccgctgcgc gacctgttgc cgctggcggg cgacgtgttg
     4201 acggcggcca agcccgcgtg ggccatgtca ccgctggtgg tggcttccgt gctgcctccc
     4261 ggcaagtggt tcgacgtggt gatcttcgac gaggcctccc agatccctcc ggcgcaggcc
     4321 gtctcggcga tctcgcgtgc cacccaggtc gtggtggccg gcgacgagcg gcagctgccg
     4381 ccgaccagct tcttcacctc ctccgtcgac gacgacgcgt cgacggaggg cgaggcattc
     4441 acggacgggt tcgagtcggt gctcgacgtt ctcaccgcag cccttccgac gcgtcggttg
     4501 tcctggcact accgctcgct cgaccagcgg ctggtggcct tcgcgaaccg cgagatgtac
     4561 gacgggacgc tggtcacctt cccgggcacg agccgagagt cagtggttcg gctcgaggtg
     4621 gtcgatggct ccgggatcgt ccagcacggt gaggaggcca tcgagagcac cgaggccgag
     4681 gtggtccggg tcgtggagct ggtgctcgaa cacgcccgca cccgcccgca ggagtcgctc
     4741 ggggtcatcg cgctcggcat caagcacgcc aacctgctgg acgacgccgt gcgtcgggcg
     4801 ctcaccgatg ccgaaggcgt gggcgacttc ttcgacgagg accacccgga gcgcttcttc
     4861 gtcaagaacc tcgaacgggt ccagggggac gagcgggacg cggtgatcct ctccgtcggc
     4921 tacggcaaga ccccgcacgg gcgagtcctg caccgtttcg gaccgctcaa cctcgaaggg
     4981 ggcgagcggc gcctcaacgt cgcgatcacc cgggcccgcc gccgcatgac cgtggtctcg
     5041 tcgctggtgg ccgacgacct cgaccccagc cgcctgaagg cccggggagc gatcatgttc
     5101 cgagacttcc tcgcgtatgc cgcggacggc cagctgccca accacgatga agagcccgcg
     5161 acctcgccgc tcgtcggccc ctcggccgga ggtgtcgctg acccgctgcg gggcgagttc
     5221 gcggcacggc tgcgtggttc aggacttgtc gtgcacgagg cctatggagg atccgggcac
     5281 ccggtggacc tcgcggtcga ggaccctgag caccccggac gtgtcctggt ggccgtggag
     5341 tccgacggcg ccgcgtatgc cgcgatgcgc agctcccgcg accgcgacag gctccgagcc
     5401 gagcagctca cgcgcctagg ctggacgcac gttcgggtct ggtcgacgga cctgttccgg
     5461 gacccggccc gggacgtggc tcgggtgcac gcggcggtgg ccagagccgc gagtgggggg
     5521 agtggtccca ctagccctgc tgaagcagct gaagcagctg aggcgactgg cgcagctgag
     5581 gcgactggcg ctcccgagtc ggtcgcgggg gacttcgcgc cgaacgccgg cgagggggca
     5641 cgtgggcgac ggttgcgtgg ccgacgggtg gtccggccgg ccgagcaaac caaggacgac
     5701 accgacgtcg ggtggggcga acggcgcaat gacgatgagc atgaccggtg gcttcaggaa
     5761 caacgtcccc cgcattgggg cacggactag agcgtgaaac gtccccgtac tggggcacgg
     5821 actgaagcgc ggcggttcac aacgacgacg ccggccccac tcggggccgg cgtcgttcgt
     5881 gtgcggtcga cggtcaggcg cggcgaacca gggcgtcgcg gatctcacgc agcaggatgg
     5941 tgttctcgtc cggggccgcg tcgacctcgg gagccttcgc gaaccgagcc ttggcggcct
     6001 cgtagggctg gaccacgaag aagtacacga ccgccgcgac gatgaggaag gcgaccaggg
     6061 cggtcaggaa ggcgcccagg ggaacgccgc caggggtgat gttgttgaag tttggcttgc
     6121 cgccgacctt gccgatcagg gacaagagca tgtccgtaaa cgccttgacg accgtggcaa
     6181 acgctgcacc gataacgaat gcgacggcaa gctcgacgag gttgccccgc atgacgaagt
     6241 ctttgaagcc cttcataggt gtcgtgaccc tttcccctag atggtgaccc tgcaggcctc
     6301 acggtaccga taccgccccg gttcacggcg gttctcgccc gagtactgac ccatcacgcc
     6361 tcagccaggt cgcaggagca ccgtgagggt ggagcgcccg agcgcgtcca gcggcaaccg
     6421 agcgatggcc tcggcagtgt cgtgaccggc ggcgatgacc actccggtgc cggaggccga
     6481 tgcgccgctc gatcgttgtc cgggcaacag accggcgccc ggaccgtcgg agacctggtc
     6541 agtccgcaga accacgacac ctcgggcgac ggtgccctgg ggtcccacga ggtcgacccg
     6601 gtcgccgggg ccgagcatgt cggtcgtgcc tggatcgcca agcacgacat gcacggcgac
     6661 ggtcccggcg ggctgcccgg cgagcagcgc cccg
//
LOCUS       DASYFY010000422         2751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1132874, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000422 DASYFY010000000
VERSION     DASYFY010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1132874"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(88..160)
                     /locus_tag="VGN19_08405"
     tRNA            complement(88..160)
                     /locus_tag="VGN19_08405"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(125..127),aa:Gly,seq:gcc)
     gene            complement(271..870)
                     /gene="coaE"
                     /locus_tag="VGN19_08410"
     CDS             complement(271..870)
                     /gene="coaE"
                     /locus_tag="VGN19_08410"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013883655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEV7195947.1"
                     /translation="MLRIGLTGGIGSGKSTVAARFAELGATVVDADALARAALAPGTP
                     GLAAVLQRFGADLAPDGVLDRTRLGSIVFADPAALADLNAIVHPIVAARTAELMAQAG
                     QDAVVVYDVPLLVENDLAAGFDAVVVVEAPLQTRLSRLAERGLDEESARSRIAAQASD
                     EQRRAVATVLLDNSGSLAELAQQVGAAWRRLVAAPDGGE"
     gene            complement(877..1614)
                     /locus_tag="VGN19_08415"
     CDS             complement(877..1614)
                     /locus_tag="VGN19_08415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195948.1"
                     /translation="MAARSARTPLRWLTAAAIAVAVLLSGCSKAPKRDTATSPSASRP
                     SSSASKSSAKPTQTPSPTGPASLGGRCDNLLPVTSIDDALGRPVIGRTSFILGIAEPN
                     IGRLARINCQYGLSTPVKGKPTPGPLIEIGISLYNSVAQAGRRVEGTLEDFRTHGAIP
                     QNVSVGTVPATILTGYTAPTIVLAAGPRTVVVTVSTRLVSGSPTSTLVLLAKAALDAT
                     AGYTGAPGAGASPSPSDTASPSDSSTG"
     gene            complement(1702..>2751)
                     /locus_tag="VGN19_08420"
     CDS             complement(1702..>2751)
                     /locus_tag="VGN19_08420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEV7195949.1"
                     /translation="VKGGLIIDIGLRGFLPASLVEMRRVRDLQPYVGKTLEAKIIELD
                     KNRNNVVLSRRAWLEQTQSEVRSDFLNKLAKGQVRSGVVSSIVNFGAFVDLGGVDGLV
                     HVSELSWKHIDHPSEVVEVGQEVTVEVLDIDLDRERVSLSLKATQEDPWRQFARTHAI
                     GQVVPGKVTKLVPFGAFVRVQDGIEGLVHISELAERHVEIPEQVVQVGDELLVKVIDI
                     DLERRRISLSLKQANEGSLAEEQFDPSQYGMEAQYNDKGEYIYPEGFDPETQEWLPGF
                     EDQREAWEKRYAKARERFEAHKKQLEEAQKADADAASDSGEATTYSSEAPADTSGTLA
                     SDEALAALREKLAGR"
BASE COUNT          414 a          995 c          908 g          434 t
ORIGIN      
        1 tcgcctctcg gccactccac catggtgctc ggcgagcggg cgggcgagtc cgccaacgcc
       61 gttcgccgaa cgtcatcgcg tccaccgagc ggacgacggg attcgaaccc gcgaccccaa
      121 ccttggcaag gttgtgcgct accagctgcg ctacgtccgc aatggtgttg cccggtgttc
      181 gccctcggtc acccgctggc tgccatcacc ggcaccgaca gggaactcta gccgatgcca
      241 tttccggtta tcaaaccggg ttcgtggggc tcactcgcca ccgtccggag ctgccaccag
      301 ccgccgccag gccgcgccca cctgctgcgc cagttccgcg agcgacccgg agttgtccag
      361 cagcacggta gccaccgctc ggcgctgctc atcgcttgcc tgagccgcta tccgggaccg
      421 ggcggactcc tcgtccagcc cgcgctcggc aagtcgggac agccgcgtct gcagcggcgc
      481 ctcgaccacc accaccgcgt cgaagccggc agcgaggtcg ttctccacca gcagcgggac
      541 gtcgtagaca accaccgcgt cctggccggc ctgcgccatc agctcggcgg tccgggcggc
      601 cacgatcggg tgcacgatcg cattcaggtc agccagcgcg gccgggtccg cgaacacgat
      661 gctgcccagc ctggtccgat ccagcacccc gtccggggcc aggtcggctc cgaacctctg
      721 cagcaccgcg gccagtcccg gcgttcccgg cgccagcgcg gcacgggcca gcgcgtctgc
      781 gtccaccacg gtggcgccga gctcggcgaa ccgggccgct acggtgctct tcccgctacc
      841 gatcccgccg gtcagcccga tccgcagcat ttccgatcac cccgtggacg agtccgacgg
      901 cgacgcggtg tccgacgggc tggggctggc cccggcaccc ggcgcgccgg tgtagccggc
      961 ggtggcgtcc agcgcggctt tggccagcag caccagggtg ctcgtgggtg agccggacac
     1021 caacctggtc gagacggtca ccaccaccgt gcgcggcccg gcagccagca cgatggtcgg
     1081 cgcggtgtag cccgtcagga tcgtcgccgg caccgtcccg accgagacgt tctgcgggat
     1141 cgccccgtgc gtccggaagt cctccagggt gccctcgacg cgccggccgg cctgcgcgac
     1201 cgagttgtag aggctgatcc cgatctcgat cagcgggccc ggcgtcggct tgcccttgac
     1261 cggcgtgctc agcccgtact ggcagttgat ccgggccagc cggccgatgt tcggttcggc
     1321 aatcccgagg atgaacgagg tacgtccgat caccggccgg ccgagcgcgt cgtcgatgct
     1381 ggtcaccggc agcaggttgt cgcaccggcc gccaaggctg gcaggcccgg tcgggctcgg
     1441 cgtctgcgtc ggcttcgcgg aggacttcga ggccgacgag ctcggccggc tggcagacgg
     1501 cgaggtcgcg gtatcgcgct tgggcgcctt cgagcagcca ctgagcagca cggcgacggc
     1561 gatcgcggca gcggtcagcc agcggagcgg ggttcgagcg gagcgggcag ccacggccct
     1621 tacggtagcc gtaaggaccc aacaagcccg ggaggcgaac ctcccgggct tgttgacggt
     1681 gttgcttgcg ttacctggtg attagcgacc agccagcttc tcgcgaaggg cagccagcgc
     1741 ctcgtcggag gccagcgtcc cgctggtgtc ggccggtgcc tcggaggagt acgtggtcgc
     1801 ctcgccggag tccgaagcag cgtccgcgtc ggccttctgg gcctcttcga gctgcttctt
     1861 gtgcgcctcg aaccgctcgc gcgccttggc gtagcgcttc tcccacgcct cgcgctggtc
     1921 ctcgaagccc ggcagccact cctgagtctc cggatcgaag ccctcggggt agatgtactc
     1981 gcccttgtcg ttgtactggg cctccatgcc gtactgggac gggtcgaact gctcctcggc
     2041 cagcgagccc tcgttcgcct gcttcagcga cagcgagatc cggcgccgct ccaggtcgat
     2101 gtcgatgacc ttgaccagca gttcatcgcc gacctgcaca acctgctcgg ggatctcgac
     2161 gtgacgctca gccagctcgg agatgtgcac cagaccctca atgccgtcct gcacccgaac
     2221 gaaggcaccg aacggaacca gcttggtgac cttgcccggc acgacctgac cgatcgcgtg
     2281 ggtgcgagcg aactggcgcc acgggtcttc ctgggtggcc ttgagcgaca gcgaaacccg
     2341 ctcgcggtcc aggtcgatgt ccagcacctc gacggtgact tcctgaccga cctcgaccac
     2401 ctcggacggg tgatcgatgt gcttccagga cagctccgag acgtgcacca gaccgtccac
     2461 cccaccgagg tcgacgaagg caccgaagtt gacgatgctc gacacgacac cggaacgcac
     2521 ctggcccttg gccagcttgt tcaggaagtc gctgcgcacc tcggactggg tctgctccaa
     2581 ccacgcacgg cgggacagga ccacgttgtt gcggttcttg tccagctcga tgatcttggc
     2641 ctcgagcgtc ttgccgacgt acggctgaag gtcacgaacg cgccgcatct cgacgagcga
     2701 cgcgggcagg aagccgcgca ggccgatgtc gatgatgaga ccacccttga c
//
LOCUS       DASYFY010000423         9108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_502538, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000423 DASYFY010000000
VERSION     DASYFY010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9108
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502538"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..1340)
                     /locus_tag="VGN19_08425"
     CDS             complement(204..1340)
                     /locus_tag="VGN19_08425"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEV7195950.1"
                     /translation="MTTTSRPPTTSGAWREGDPVGARRFADLGAVELERGGVLPAVRV
                     AYETWGRLNARCDNAILVEHALTGDSHVVGAPEPGHPTAGWWDGLVGPGRPLDTDRYF
                     VVAANVLGGCQGTTGPSSTAADGRPWGSRFPFITVRDQVQTEALLADTLGIPTWRLVL
                     GGSMGGMRALEWAVTHPTRVQASMVLASTAYATAEQIGWCQAQLLAIRSDPHFHGGDY
                     YDASGGPEVGLGIARRIAHVTYRSELELHTRFGRAPQGVEEPLGGQGRYAVESYLDHH
                     AGKLSGRFDANSYVVLTEAMNSHDIGRGRGGVEAALAGVSADLVVVAVDSDRLYPPRL
                     SVELAAAAPTATLHTVQSEYGHDGFLIELDQVGAIATEVLASPA"
     regulatory      complement(1354..1473)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00634"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch class IV; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00634"
     gene            complement(1482..2627)
                     /locus_tag="VGN19_08430"
     CDS             complement(1482..2627)
                     /locus_tag="VGN19_08430"
                     /inference="COORDINATES: protein motif:HMM:NF025200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4192 domain-containing protein"
                     /protein_id="HEV7195951.1"
                     /translation="MTAIRLRGPGDVLASLPYQLGYHPQDSIVVMALRDGAVDLVERL
                     DLPAAPDAADASAALVAPLVREGFDSVLLVGFESIAGSADPVMKALSSDLTRLRIPSL
                     DQLVVRDGRWFRPDCTTGCCPPEGMPVPEASATPAVADYVGLGVAPLARRADLAEAVR
                     ADPVISEEVSVELRRLGTVAQPPLVGSAPSASSAPCAPSVQRLAWLSLWAAICHEAVD
                     RPVEEILGATEVAELVRSLADVQLRDAIVAWLCPGSLPLATLDEDLVDALLSTLGPLP
                     DEDAGIEVARSGRRLLVRLEWLARAVPDPHGTPLLTVLANLAWHLGDGTLARVALDRA
                     LAHDPDYRLAILLDRMVDLGFRPSSARERVRTVQFSDVRRSKGRGLV"
     gene            complement(2702..3109)
                     /locus_tag="VGN19_08435"
     CDS             complement(2702..3109)
                     /locus_tag="VGN19_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HEV7195952.1"
                     /translation="MATSRLGAFRTLVTALRIATRPGSAGLGERLTALPRLLRATFNG
                     EYAGTSKGRLVLMFGAAAYLLSPLNFVPAAMLPLLGLADDAVVVSWIAATVVTETEAF
                     LRWERENLRQGSGPSSSDRPVTAARFSRATHSR"
     gene            complement(3153..3887)
                     /locus_tag="VGN19_08440"
     CDS             complement(3153..3887)
                     /locus_tag="VGN19_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="HEV7195953.1"
                     /translation="MRFPGTDKSDADQGAEQGGQPLSALEAARQGGADAGPVAGAVTS
                     LVESLLDLGIDGKGPFDSAQKVADVKRAEKPDAEEAIDAVVRGHLKLAAAGGFVTGLG
                     GFITLPVALPVNVLEFYLLATRMVASVASLRGYDIKRPEIRSAVLLTLVGADADDLLK
                     KAGVMSTGRLANLAAQRLPGPALMVVNKAVGFRLLSTVGRKTLTRFGRGVPVIGGVIG
                     AGLDGYLLNRIADHARHEFPPKVSAH"
     gene            3958..4869
                     /locus_tag="VGN19_08445"
     CDS             3958..4869
                     /locus_tag="VGN19_08445"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEV7195954.1"
                     /translation="MAESTAPETTADTTSAFAEYAHPERLVTTDWLAEQIAAGRVGSS
                     GADRVALLESDEDVLLYDTGHIPGALKLDWHQDLNDQLMRDYVDGEQFARVMSERGID
                     RDTTVVIYGDKNNWWAAYALWVMTLFGHEDVRLLDGGRSKWIAEGRELTKGTPAATAA
                     AYPVVERDDAPIRAFKDDVLAHLGGPLVDVRSPGEFTGELLHMPDYPQEGAMRGGHIP
                     GAKSVPWARAANDDGTFRSRADLEAIYLSEQGLSPEAPTIAYCRIGERSSHTWFVLTH
                     LLGFGNVRNYDGSWTEWGNAVRVPVER"
     gene            4866..5405
                     /locus_tag="VGN19_08450"
     CDS             4866..5405
                     /locus_tag="VGN19_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015936865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HEV7195955.1"
                     /translation="MTERAPLPSALQEIADDFAELAVPQRLELLLEFSEGLPALPQRY
                     AESLDSMEQVHECQSPLFLVVEVGEADAADTADTADTADTAKTGSPEPDPAQSPDPSQ
                     RPVRLFFSAPQEAPTTRGFAGILHEGLDGLTVQEVLAVPDDMPYRFSLGEAVSPLRLR
                     GMVGMLSRIKRQTALKARV"
     gene            5468..7156
                     /locus_tag="VGN19_08455"
     CDS             5468..7156
                     /locus_tag="VGN19_08455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEV7195956.1"
                     /translation="MAADLAFVTAPDGRAAIVGPGVAHCGPTHELVARFAQLEGSGLA
                     GARVRWTWWSAGVDASGVVAAGVPVARCWDIAEAHRVLKGGWQADPQLSWATAQALSL
                     DGLPAPVRGDLFDDFTRETDEVVRSDGYLEPAAGRPGWHPDDDTLVAWGRAALECAER
                     QAAQLALVGPRALSLAHSESAASFLCVELGRDGLPVDRQAATVLIAASAGPRPRDESD
                     AREIRAARDALVLRHVPGHERADLRNPAQVKEVLASVGVVVPNTRKWVLEPFRQTHPV
                     VDALLEWRKAERIATTYGYTWLDTHVGADDRLRGGWTACDGAAGRMTAQNGLHNLPTD
                     LRSAVAAQPGHVFVRADLGQIEPRVLAVVSEDEAFAAATRADDLYAPVAERLGVERPV
                     AKVAVLAAMYGQRSGAAGEALKGLERAYPVAMAYLDQAYAAGLRREPVRTFGGRLIRL
                     DAALTDAPAEGAAAYDAARGRFARNAVIQGSAAELFKAWAATVRATTRDLGAQIVLCL
                     HDELLVHVPEQHAQEVRRRLLVALDDSARRWSGTTKVRFVADASVIHRWSEAKE"
     gene            7204..8004
                     /locus_tag="VGN19_08460"
     CDS             7204..8004
                     /locus_tag="VGN19_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1206 domain-containing protein"
                     /protein_id="HEV7195957.1"
                     /translation="MNTYDVKRVASRASDHPALEAAARAGYAVSGLLHLLIGWIALQV
                     AFGSVSKSADQSGALSALSANGLGKLLLWVAVAGFLGLALWQVADAVAGHPGSGRDAW
                     GGRAKAAGKAVVYLALAWSAFGFARGRVTSSKAQSVDFTANLLAKPGGRAVVVVVGLA
                     IVAVGIYHVVKGWTRKFLRDLEDSPGTWATRAGRVGYIAKGVALVIVGILFSAAGLHQ
                     QANEATGLDGALRTLRNEPFGMVLLALMAVGFAAFGLYSFARARHAKV"
     gene            complement(8040..8969)
                     /locus_tag="VGN19_08465"
     CDS             complement(8040..8969)
                     /locus_tag="VGN19_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043248 - proteasome assembly [Evidence
                     IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEV7195958.1"
                     /translation="MQNPSELYHFEIDTDPQELRASVMVVALGGFMDAGQTQRILTEH
                     LLATGESTVVASFDVDQLIDYRSRRPVMVFDSNRWTSYDDPCLALHRLVDREGTPFFL
                     LTGPEPDFQWERMSEAVRQLVSVLGVNLVVSAHGIPMAVPHTRPIGLTAHATDPRLIP
                     VQDNPFGRVEVPGSLSALIELRLGESGKDAIGFAIHVPHYLAQAEFADGAVTALNAII
                     AATGLNLPIDDLIAQAGLNRAEIAREVEGSEEVSQVIAALERQYDTFIEGRQKPSLLA
                     TDVSELPSADEIGAEFEQFLREVNDDGGTGSPT"
BASE COUNT         1402 a         3188 c         3146 g         1372 t
ORIGIN      
        1 ccgtcatact cacggccgcc tcgctgggag ttgatgacga tcagcttcgt cttgcgcagc
       61 agcgactcgt ccgcagcgcg gcgtagcgca gctcgccctt cacgcgtcgg gacatagccc
      121 accacgatgg ccacggggga acctccttgt tcgtcgacct tgcggcagca gccgctgggg
      181 cgaccgtacc ggatcggcga aggtcaggca ggcgacgcga gcacttcggt ggcgatagcc
      241 ccgacctggt ccagctcgat gaggaacccg tcatggccgt actccgactg aacggtgtgc
      301 agcgtcgccg tgggtgccgc cgcggcaagc tcaaccgaga gacgaggggg gtagaggcgg
      361 tcggagtcga cggcgaccac gacgaggtcc gcgctgaccc ccgccagcgc ggcctcgacc
      421 ccgccacgcc ctcgcccgat gtcgtgagag ttcatggctt cggtgaggac cacgtacgag
      481 ttggcatcga atcgcccgct cagcttgccg gcgtggtggt cgaggtagga ctcgaccgca
      541 tagcggccct gaccccccaa gggctcctcg acgccttgag gggcgcgacc gaagcgggtg
      601 tggagctcga gctcactgcg ataggtcacg tgcgcgatcc gtcgggcgat gccgagcccg
      661 acctcggggc cgccggaagc gtcgtagtag tccccgccat ggaagtgcgg atcggaccgg
      721 atggcgagca gctgggcctg gcaccatccg atctgctccg ccgtggcgta tgccgtgctc
      781 gccagcacca tcgaggcttg cacccgcgtg gggtgcgtta ccgcccactc cagggcccgc
      841 atcccgccca tggatccgcc caggaccagc cgccaggtgg ggatgcccag ggtgtccgcg
      901 agcagcgctt cggtctggac ctggtcgcgc acggtgatga acgggaagcg actaccccac
      961 ggtcggccgt ccgcagcggt ggacgatgga cctgtggtcc cctggcatcc gccgaggacg
     1021 ttcgccgcca cgacgaagta gcggtcggta tccaagggcc gccctggacc gaccagcccg
     1081 tcccaccagc cggctgtcgg gtggccgggc tccggtgcgc cgacgacgtg gctgtctccg
     1141 gtcaaggcgt gctcgaccag gatggcgttg tcgcaccgag cgttcagccg cccccaggtc
     1201 tcgtaggcca cgcgcactgc gggcaacact cccccacgct ccagctcgac cgccccgagg
     1261 tcagcgaagc ggcgagcccc cacggggtcg ccctcgcgcc aggcgcccga ggtcgtcggg
     1321 ggtcgagagg tggtagtcat cgcagctcct gcaacatcgc gcttgcctgc tggatccaca
     1381 gcgcccagca cagccgggtc atcacccggg gcaccccacc gcgaggaggg ttgccgccca
     1441 gcgagccggg gcttcgcgct ggaactcatg accttcacgc atcatacgag ccccctcccc
     1501 ttcgatcgcc gaacgtccga aaactggacg gtccgaacgc gctctcgcgc agacgagggc
     1561 ctgaagccca ggtcaaccat gcggtcgagc aggatggcga gccggtagtc agggtcgtgc
     1621 gccaatgccc ggtccagcgc cacccgcgcc aaggtgccgt cgccgagatg ccaggcgagg
     1681 ttcgccagaa cggtcagcag gggcgtcccg tgggggtcgg gaaccgcccg ggcgagccac
     1741 tcgagccgga ccagtagacg ccgtcccgac ctggccacct cgatgcctgc gtcctcgtcg
     1801 ggcagcgggc ccagcgtgga cagcagtgca tcgacgaggt cctcgtcgag cgtggccaga
     1861 ggcagagagc ctgggcacag ccaggccacg atcgcgtctc gcagctggac gtccgccagg
     1921 cttcgtacga gctccgccac ctccgtggca ccgaggatct cttcaaccgg tcggtcgacc
     1981 gcctcgtgac agatggccgc ccacagtgag agccatgcca gccgctgcac cgatggggcg
     2041 cagggggctg acgaggcgga gggggctgac ccgacgagag gcggctgcgc gacggtcccg
     2101 aggcgacgta gctcgaccga cacctcctcg ctgatcaccg gatcggctcg gaccgcctct
     2161 gcgaggtcgg cccgccgggc cagcggcgcc acccccaacc cgacgtagtc ggcgaccgcc
     2221 ggcgtggccg acgcctcggg cacgggcatc ccctccggcg ggcagcaacc cgtcgtgcag
     2281 tccggtctga accatcgacc atcccgcacc accagctggt ccagcgacgg gatccggagt
     2341 cgggtcaggt cgctcgacaa cgccttcatg accgggtcgg cagagccggc gatcgactcg
     2401 aagccgacga gcagcaccga gtcgaacccc tcgcgcacca atggcgccac gagcgcggca
     2461 gatgcgtccg ccgcgtccgg cgcagccggg aggtcgagac gctcgaccag gtccaccgca
     2521 ccgtcgcgca acgccatcac cacgatgctg tcctgagggt ggtagccgag ctggtaggga
     2581 agggacgcca gtacatctcc ggggccgcgc agtcggatcg ctgtcatgaa cccactgtcg
     2641 atccaccgcc acggctccac ctgctcgccc cggcgagcct gtggagagga gcagacgtgg
     2701 gttagcggct gtgagtcgct cggctaaatc tcgcagcggt gacgggtcga tcagaggagg
     2761 acggtccgga gccttgccgg aggttctcgc gctcccagcg caggaaggct tccgtttcgg
     2821 tgaccaccgt ggcagcgatc cacgagacca cgacagcatc gtcggccaac cccaacaagg
     2881 gcagcatggc tgccgggacg aagttgaggg gcgacaggag ataggccgct gccccgaaca
     2941 tcagcacgag gcgccccttg gaggtcccgg catactcgcc gttgaacgtg gcgcgcagca
     3001 gccgcggcag cgccgtgagc cgctcaccca ggcctgcgga ccctggccgg gtggcgattc
     3061 gtagcgccgt taccagggtt cggaacgcac cgagtcgaga agtagccatc gtcaaactcc
     3121 ttactgtcgc aggccgtgca ggggtcgatg cctcagtggg cgctgacctt cggaggaaac
     3181 tcgtgccgtg cgtggtcggc gatcctgttg agcaggtagc catcgagccc ggctccgatg
     3241 acgccaccga tcacggggac tcccctgccg aagcgagtca gggtcttgcg gcccaccgtc
     3301 gacaggagtc ggaagcccac ggccttgttg acgaccatca gggcaggccc cggcagccgc
     3361 tgggctgcga gattcgccag ccgacccgtc gacatcacgc ccgccttctt caataggtcg
     3421 tccgcgtccg cgccgacgag cgtcagcagg acagcggagc ggatctcggg tcgtttgatg
     3481 tcgtagccgc gcaaactcgc caccgaggcg accatccgcg tcgccagcaa gtagaactcg
     3541 agaacgttca cgggcagggc cacgggcagc gtgatgaacc caccaaggcc cgtgacgaaa
     3601 ccaccggctg ccgcgagctt gagatggccg cgcacgaccg cgtcgatcgc ctcctcggcg
     3661 tccggcttct ccgcccgctt gacgtccgcg accttctggg ctgagtcgaa cggaccctta
     3721 ccgtcgatgc cgaggtccag caggctctcg acgagactgg tgacagcacc agcaacgggc
     3781 cccgcatccg ccccgccctg acgggcggcc tcgagcgccg acaacggttg tccgccctgc
     3841 tcagcgccct ggtcggcatc gctcttgtcc gttccgggaa aacgcacgaa ccctcctcga
     3901 ctggtgtccg gccatcctgc catgagcgcg tctgaccagc aggtttagcc tggggtcatg
     3961 gctgagtcca ccgcacccga gaccactgct gacaccacct ccgcgttcgc ggagtacgcc
     4021 caccccgagc ggctggtgac gaccgactgg ctcgccgagc agatcgctgc cggccgcgtc
     4081 gggtccagcg gggccgaccg ggtcgcgctg ctcgagtccg atgaggacgt cctcctctac
     4141 gacaccggtc acatccccgg agcactcaag ctcgactggc accaggacct caacgaccag
     4201 ctcatgcgtg actacgtgga cggcgagcag ttcgccaggg tcatgtcgga gcgcggcatc
     4261 gaccgcgaca caaccgtggt gatctacggc gacaagaaca actggtgggc cgcctacgcc
     4321 ctgtgggtga tgaccctgtt cggccacgag gacgtccgcc tgctcgacgg cggccggtcc
     4381 aagtggatag ccgagggccg cgagctcacc aagggcacgc ccgctgccac agccgcggca
     4441 tacccggtcg tcgaacgcga cgacgccccg atccgggcgt tcaaggacga cgtcctcgcc
     4501 cacctcgggg gcccgctggt cgacgtccgc tcccccggcg agttcaccgg cgagctcctg
     4561 cacatgcccg actacccaca agagggggcc atgaggggcg gccacattcc cggcgccaag
     4621 tccgtgccgt gggcccgtgc ggccaacgac gacggcacgt tcaggtctcg cgccgacctc
     4681 gaggcgatct acctcagcga gcagggcctg tcccccgagg cgcccacgat cgcctactgc
     4741 cgcatcggcg agcgctcctc acacacgtgg ttcgtcctga cccatctgct cggcttcggg
     4801 aacgtccgca actacgacgg ctcctggacc gagtggggca acgccgtacg cgttccggtg
     4861 gagcggtgac cgagcgcgca ccgctgccgt ccgcgctcca ggagatcgca gacgacttcg
     4921 ccgagctcgc tgtcccgcag cggctcgagc tcttgctcga gttcagcgag ggcctgccgg
     4981 cgttgccgca gcggtatgcc gagtcgctcg actccatgga gcaggtccac gagtgccagt
     5041 caccgctctt cctcgtggtc gaggtcggcg aggcggacgc agcggacact gcggacacgg
     5101 cggacactgc ggacacggcc aaaaccgggt cgccggagcc tgacccggcc cagtccccgg
     5161 acccttccca gcgtcccgtg cggctcttct tctccgcgcc acaggaggcg cccacgaccc
     5221 gcgggttcgc gggaatcctc catgaggggc tcgacggcct cacggtgcag gaggtgctcg
     5281 ccgtcccgga tgacatgccg taccggttct cgctcggcga ggcggtctcg ccgctgcgac
     5341 tgcggggcat ggtgggcatg ctcagccgca tcaaacgcca gaccgccctg aaggcccgag
     5401 tctgagccgt cgcctgcggg tcggctggcg tgaggatgtc agcgcctcct gacaggatga
     5461 cgccgacatg gctgctgacc tcgctttcgt gaccgcgcct gacggtcgtg ccgccatcgt
     5521 cggacccggc gtcgcgcact gtggtcccac ccacgagctc gtggccaggt tcgcccagct
     5581 ggaagggtcc gggctggccg gcgctcgtgt gcgctggacc tggtggtccg ccggcgtcga
     5641 cgcgtcgggg gtggtcgccg ccggagttcc ggtggcccgt tgctgggaca tcgccgaggc
     5701 ccaccgcgtg ctcaagggtg gttggcaggc tgatccccag ctctcctggg ccaccgcgca
     5761 ggccctgagc ctcgacgggc tgccggcccc ggtgcggggt gacctcttcg acgacttcac
     5821 tcgtgagacc gacgaagtgg tgcgctcgga cggctacctc gagcccgctg ccggacgccc
     5881 cggctggcac cccgatgacg acacgctagt ggcctggggg cgggccgccc tcgagtgcgc
     5941 cgagcggcag gcggcccagc tggccctggt tggtccgcga gcgctgtcgc tggctcattc
     6001 ggagtcagct gcgtcgttcc tgtgtgtcga gctcggtcgg gacgggctac cggtcgaccg
     6061 ccaggcggcg accgtgttga tcgccgcctc ggcagggcct cggccgcgcg acgagtccga
     6121 cgcccgcgag atccgtgccg cgcgcgacgc cctcgtgctg cgacatgtcc cgggccacga
     6181 acgggccgac ctgcgcaacc ctgcccaggt caaggaggtg ctggcctccg tcggggtggt
     6241 cgtgcccaac acccgcaagt gggtgctcga gccctttcgg cagacccacc ctgtggtcga
     6301 cgccctgctc gagtggcgca aagccgagcg catcgccacg acctacgggt acacctggct
     6361 cgacacccat gtcggcgcgg acgatcgcct ccgtggcggc tggactgcct gtgacggtgc
     6421 tgcgggacgg atgaccgccc agaacggcct gcacaacctg cccacggacc tgcgctcagc
     6481 cgtggcggcc cagccgggcc atgtcttcgt gcgagccgac ctcggccaga tcgagcctcg
     6541 ggtgctcgcg gtcgtgtccg aggacgaggc cttcgccgcc gccactcggg cggacgacct
     6601 ctacgcgccg gtcgccgagc ggctgggggt cgaacgaccg gtcgccaaag tggccgtgct
     6661 ggcggccatg tacggccagc gcagcggggc ggccggcgag gcgctgaagg ggctcgagcg
     6721 cgcctacccc gtggccatgg cctacctcga ccaggcgtat gccgccgggc tgcgccgcga
     6781 accggtgcgc accttcggtg gtcggctgat ccgcctcgac gccgccctga ccgacgcgcc
     6841 cgccgagggc gctgcggcat acgacgcggc acggggacgg ttcgcccgca acgcggtgat
     6901 ccaaggttcg gccgccgagc tgttcaaggc ctgggctgct acggtccgcg ccacgacccg
     6961 tgacctcggt gcgcagatcg tgttgtgcct gcacgacgag ctgctcgtac acgtccccga
     7021 gcagcacgct caagaggtgc gtcggcggct cctggtggcc ttggacgaca gcgcccgccg
     7081 ctggagtggc accaccaagg tgcggttcgt cgcggacgcc tcggtcatcc accgctggtc
     7141 ggaggccaaa gagtagtcag cacaacggcc accgcgtggt caggtgcgtg gttaggtttc
     7201 ctcgtgaaca cctacgacgt gaagcgcgtc gcgtcgcgcg cctccgacca tccggccctg
     7261 gaggccgcgg ctcgagccgg gtatgccgtg agcggcctgc tccacctgct gatcggatgg
     7321 atcgcgcttc aggttgcctt cggcagcgtg agcaagagcg ccgaccagag cggggccttg
     7381 agcgcattgt ccgcgaacgg cctgggaaag ctcctgctgt gggtggcggt ggccggtttc
     7441 ctcgggctcg ccctgtggca ggtcgccgat gccgttgcgg gtcacccggg cagcggccgg
     7501 gacgcgtggg gcggccgggc caaggctgcg ggtaaggcag tggtctacct ggccctggcg
     7561 tggtcggcgt tcggctttgc gcgcgggcgg gtgaccagca gcaaggccca aagcgtcgac
     7621 ttcacggcga acctgctcgc caagcccggc ggccgggccg tcgtcgtggt cgtggggctg
     7681 gcgatcgtcg ccgtcgggat ctatcacgtc gtcaaggggt ggaccaggaa gttcctgcgt
     7741 gacctcgagg acagcccggg cacctgggcc acccgagccg ggcgagtcgg ttacatcgcc
     7801 aagggagtcg cgttggtcat cgtcggcatc ctgttcagcg ccgccggact acaccagcag
     7861 gccaacgagg ccaccggcct cgacggtgcg ctgaggacgc ttcggaacga accgttcggg
     7921 atggttctgc tggcgctgat ggcggtcggc ttcgcggcat tcggcctgta cagcttcgcc
     7981 cgcgcccggc acgcgaaagt ctgaccgagt cattcgcttg gtcagtgtcc gggtcagggt
     8041 caggtcggcg agccggtccc gccgtcgtcg ttgacctcgc gcaggaactg ctcgaactcg
     8101 gcaccgatct cgtcggccga cggcagctcg ctcacgtcgg tggcgagcag gctgggcttc
     8161 tggcgccctt cgatgaacgt gtcgtactga cgctccagcg cagcgatgac ctgtgagacc
     8221 tcttccgaac cctcgacctc acgcgcgatc tcggcgcggt tgagaccggc ctgggcgatg
     8281 aggtcgtcga tcggcaggtt gagcccggtg gcggcgatga tggcgttgag agcggtcacc
     8341 gcaccgtcgg cgaactcggc ttgggccagg tagtgcggga cgtggatggc gaacccgatg
     8401 gcgtccttgc cactctcacc cagccgaagc tcgatgagcg ctgacaggct cccggggacc
     8461 tcgacccgac caaacgggtt gtcctggacg ggaatcagcc tggggtcggt ggcgtgtgcg
     8521 gtcaggccga tgggtcgcgt gtgcggtacc gccatcggga tgccgtgagc actgaccacg
     8581 aggttgaccc cgagcacgga caccagctgc cgcacggcct cggacatccg ctcccactgg
     8641 aagtcgggct ccggcccggt cagcaggaag aacggcgtgc cctcgcgatc gacgaggcgg
     8701 tgcagcgcca ggcacgggtc gtcgtagctg gtccaccggt tgctgtcgaa gaccatcacc
     8761 gggcgacggc tgcggtagtc gatcagctgg tcgacgtcga aggaggccac cacggtggac
     8821 tcccccgtcg ccagcagatg ctcggtgagg atgcgctggg tctgcccggc gtccatgaag
     8881 ccgccgagtg cgacgaccat caccgaggcc cgcagctcct gcgggtcggt gtcgatctcg
     8941 aagtggtaga gctcggaggg gttctgcacg gtgactccaa cggtcagttg cggtcgtgtt
     9001 gggcgttcag ttgctgcaac gtccaagcct gtcatgggat tccacctcgc gtttgccagg
     9061 taggcacaat gcgtctatcg ttggatgaaa cgaaactgtt tcgttcca
//
LOCUS       DASYFY010000424         1971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_344579, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000424 DASYFY010000000
VERSION     DASYFY010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344579"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..992
                     /locus_tag="VGN19_08470"
     CDS             <1..992
                     /locus_tag="VGN19_08470"
                     /inference="COORDINATES: protein motif:HMM:NF014110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HEV7195959.1"
                     /translation="SSPADPDRIYASQSSGWFGQVLQRSDDGGQTWNAVGNQFQYEGT
                     TGTHKWYDGSQHPWEFARVWHLEPSPTDPDTVYAGVEDAALFKTTDGGQSWQELPGVR
                     THPTGPSWQPGAGGLCLHTILIDPTNPERIFIAISAAGAFRTDDGGKSWRAINQGLHS
                     EGIPDPKAEVGHCVHRLAVHPSRPDTLFMQKHWDVMRTDDAGESWREISGNLPTDFGF
                     AIDVHAHEPETVYVVPITSDSHHFVPDGKLRVFRSRSGGNEWEPLTNGLPQRDCYVNV
                     LRDAMAVDDLDSCGVYFGTSGGQVYSSADSGDSWNAIVHDLPPVLSVQVQTLR"
     gene            989..1285
                     /locus_tag="VGN19_08475"
     CDS             989..1285
                     /locus_tag="VGN19_08475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEV7195960.1"
                     /translation="MIRVILPPNLRTLARTEREVQLDVAGACTQRAILDALEATHPAL
                     RGTIRDHQTQVRRPLLRFFACEEDLSDESPDAPLPEAVAKGTEPFLIVGAMSGG"
     gene            1367..>1971
                     /locus_tag="VGN19_08480"
     CDS             1367..>1971
                     /locus_tag="VGN19_08480"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEV7195961.1"
                     /translation="MNLVRRAVPVLAGLALVPVLAAACSAPVRLATPAEVKQAAAPTP
                     APSAPNTTIPIAPAPSASPGAGVAPGASPAPAPAGSGALAQLQAELRAVIDQVLPSVV
                     QIDTPTDSGSGVVIDAGGLIVTNAHVVGSSTSFTITTSAGQTMSGTLVGTYAGGDLAL
                     IRAALGDSSLKPITIGDSGAVHLGDVVLAIGSPLGLTDSVS"
BASE COUNT          312 a          737 c          639 g          283 t
ORIGIN      
        1 attcgtcgcc ggccgatccg gaccggatct atgcctcgca gtcgagcggt tggttcggcc
       61 aggtcctgca gcgctcggat gacggcggcc aaacctggaa tgccgttggc aaccagttcc
      121 agtacgaggg cacgaccgga acccacaagt ggtacgacgg ctctcagcac ccctgggagt
      181 tcgcccgggt gtggcacctc gagccgtcac ccaccgaccc ggacacggtg tatgccggcg
      241 tcgaggacgc cgctctcttc aagaccacgg acggcgggca gtcatggcag gagctgccag
      301 gcgttcggac acacccaacc ggtccctcct ggcagccagg cgccggcggc ctgtgcctgc
      361 acaccatcct catcgacccg accaatcccg agcgcatctt catcgccatc tcggcggccg
      421 gcgccttccg gaccgacgac gggggcaaga gctggcgcgc gatcaaccag ggcctccact
      481 cggaaggcat ccccgatccc aaggccgagg tcggtcactg cgtgcaccgg ctcgcggttc
      541 acccctcacg tcccgacacg ctgttcatgc agaagcactg ggacgtcatg cggaccgacg
      601 atgcggggga gagctggcgc gagatcagcg gcaacctgcc caccgacttc gggttcgcca
      661 tcgacgtgca cgcgcacgag cccgagacgg tctacgtcgt tcccatcacg agcgactcgc
      721 accacttcgt ccccgacggc aagctgcggg tcttccgcag ccgcagcggc ggcaatgagt
      781 gggagccact gaccaacggc ctgccgcagc gcgactgcta cgtcaacgtg ctgcgagatg
      841 cgatggcggt cgacgacctt gactcctgcg gggtgtactt cggcacctcg gggggccagg
      901 tctacagctc ggccgactcg ggcgacagct ggaatgccat cgtccacgac ctgcctccgg
      961 tcctctcggt gcaggtgcag accttgcgat gatccgggtc atcctgccgc cgaacctccg
     1021 cacgctggcg cgcaccgaac gcgaggttca gctcgacgtg gcaggcgcgt gcacgcagcg
     1081 ggcgatcctc gatgccctgg aggccaccca cccggccctg cgcggcacga ttcgcgacca
     1141 ccagacccag gtgcgccggc cgctgctgag attcttcgcc tgcgaggagg acctgtcgga
     1201 tgagtcgccc gacgcgccgc tgcccgaagc ggtggcgaag ggcacagagc cgttcctgat
     1261 cgttggcgcg atgtcgggag gctgaggaga gcaggatcca aagccggctc cgagccggtc
     1321 ccaatcaacg tccaatccgg ggccactagc gtctcgctcc gcacccatga atctggtccg
     1381 ccgcgcggtt cccgtcctcg ccgggctcgc actggtcccg gtcctggccg ccgcgtgctc
     1441 ggcacccgtg cggctcgcca ccccggctga ggtgaagcag gcggccgcgc ccaccccagc
     1501 accctcagcc ccgaacacga ccatcccgat cgcaccggcg ccgagcgcca gcccgggcgc
     1561 gggggtggcc ccgggcgcct caccggcccc ggcgccggct ggctcgggcg cgctggccca
     1621 gctccaggct gagcttcggg cagtgatcga ccaggtcctg ccctcggtgg tccagatcga
     1681 cacccccacc gactccgggt cgggcgtggt gatcgacgcc ggcgggctga tcgtcaccaa
     1741 cgcccacgtc gttggcagca gcacctcgtt caccatcacc acctccgccg ggcagacgat
     1801 gagcgggaca ctcgtcggca cctacgccgg cggcgacctg gccctgatac gggctgccct
     1861 cggcgactcg agcctcaagc cgatcacgat cggtgactcc ggtgccgtgc acctgggcga
     1921 cgtggtcctc gccatcggca gcccgctggg cctcaccgac agtgtcagcg a
//
LOCUS       DASYFY010000425         1638 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_870857, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000425 DASYFY010000000
VERSION     DASYFY010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_870857"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..601)
                     /locus_tag="VGN19_08485"
     CDS             complement(<1..601)
                     /locus_tag="VGN19_08485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEV7195962.1"
                     /translation="MSIASTPPSRSSGPSRSHPARRSAPLAQARDHLRAVPPLGATTH
                     PRLPVVVTAGLPVPTTRGVVDYANFDHAASTPALVTVAQAVDSTLRTYSSVHRGNGYA
                     SRVTSAWYEQARAQVREFVGAREADEVIFTRNSTDSFSLLAHAIPRDTTVFVFETEHH
                     AALLPWKPRNTVRLPVPGGVEDAQVLLRTALKARRGRHRL"
     regulatory      complement(642..754)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00634"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch class IV; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00634"
     gene            936..>1638
                     /locus_tag="VGN19_08490"
     CDS             936..>1638
                     /locus_tag="VGN19_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HEV7195963.1"
                     /translation="MATRPSTSTRSSGARGTATRPANRKGSAPRKSPARGKTSGGGLP
                     LPLRAVKGTWMGMAHVAGGAVRKVGTSASELDPEHRRDGVGFFLIGLAILVAAREWWA
                     FQGALGDVVHAVVAGTFGRVAYAVPLALLFLGVRLLRAPQDDAANSRIGIGLGAIVVA
                     ASGLTHVAAGIPTPPQGAAGMRNGGGIIGFLASSPLQAAVSTYGTVPILLMLGFFGIL
                     VMTATPVHLIPERLRE"
BASE COUNT          210 a          540 c          627 g          261 t
ORIGIN      
        1 ccaggcggtg ccgccctcgg cgggccttca gagcagtgcg cagcagcacc tgggcgtcct
       61 cgacgccgcc gggcacggga aggcgcacgg tgttgcgcgg cttccaaggc agcagggctg
      121 cgtggtgctc ggtctcgaag acgaacaccg tcgtgtcgcg tgggatcgcg tgggccagca
      181 ggctgaacga gtcggtgctg ttgcgggtga agatcacctc gtcggcctcg cgggcaccga
      241 cgaactctcg cacctgggcc cgggcctgtt cgtaccaggc gctggtcact cgcgaggcgt
      301 agccgttgcc gcgatggacc gaggagtagg tgcgcagcgt gctgtccacg gcctgggcca
      361 ccgtgacgag cgcgggcgtg gaggcggcgt ggtcgaagtt cgcgtagtcg accacgcccc
      421 gggtggtcgg caccgggagt cccgcggtca cgaccacggg gaggcgcggg tgagtggtgg
      481 caccgagcgg agggaccgcg cgaaggtggt cacgggcctg ggccagggga gcgctgcggc
      541 gtgctgggtg gctgcgagat ggcccgctgc tgcgcgaggg tggggtgctg gcgatcgaca
      601 tgtacgggta ctcctggtcc ggtgggaccc gaggactgcc gggtccgcgc ttgccggctg
      661 cgggtgcaga cggcccggtc gtcacccgga gcaccccacc gcggcggagg gttgctggtc
      721 agcaagccgg ggcttcgcgc tgacactcat gacctatgac cgtggacgat atcgctgggc
      781 tgcggcgtca tccacccttc gaactatgct tctcgacatc tgagacctgg cgacggcacg
      841 tgccgggagg ccaggcgctc gtgaatggag attggccgct ggtgaaacgc gtgtgacgcg
      901 tgtgtccggt gtgccgttcg cgtagcctgc ggagcatggc gacacgtcca tccacctcta
      961 cgcgctcgtc gggcgctcgc ggcaccgcga cccggccggc gaaccgcaag ggcagcgccc
     1021 cgcgcaagtc gcccgcccgc ggcaagacca gcggcggggg tctgccgctg ccgctgcgag
     1081 ccgtcaaggg cacctggatg ggcatggcgc atgtcgccgg gggagcggtg cgcaaggtcg
     1141 gcacgagtgc cagcgagctc gatcccgagc accgccgaga cggggtgggc ttcttcctga
     1201 tcggtctggc catcctcgtc gcggcccggg agtggtgggc tttccagggt gcgctgggtg
     1261 acgtggtgca cgccgtcgtc gcgggcacct tcgggcgcgt cgcctatgcc gtcccgttgg
     1321 ctttgctgtt tctcggggtc cgtctgctgc gcgcccccca ggacgacgcg gcgaactcgc
     1381 ggatcggcat cgggctgggc gcgatcgtgg tcgccgcgtc cggcctgacg cacgtcgccg
     1441 ccggtatccc gacgcctccg caaggcgctg cgggaatgcg caacggcggg ggcatcatcg
     1501 gcttcctggc ctccagtccg ctccaggctg ccgtgtcgac gtacggcacc gtgccgatcc
     1561 tgctcatgct gggcttcttc ggaatcctgg tgatgaccgc gacacccgtg cacctgatcc
     1621 ccgagcggct ccgcgagc
//
LOCUS       DASYFY010000426         7591 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1606431, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000426 DASYFY010000000
VERSION     DASYFY010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7591
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1606431"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1986)
                     /locus_tag="VGN19_08495"
     CDS             complement(<1..1986)
                     /locus_tag="VGN19_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009081976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HEV7195964.1"
                     /translation="MQVTQQRRSISPTSPEQPGSTHRRVRMALVSTVALTLAGGGIAY
                     ATTDAFGNRTVGTQYADGLQISDNQVIKPIGARVMTQYGKFMGSTVSPGGRFLAASSA
                     DKGVVLQVFDLAANKLIYRVGKASGVDQNLADGSVGQEGPTYSPDGKFLWLSQASALT
                     RFPVNPDGTLGTATRFPLPALNGASALPGKSAYSPDGSTLYVAMNGQNTVAALDPATG
                     VVKATWKVGNAPRQLIFQGSKLYVSNEGGRAAKPHETALNSYGTNVPTDPYLDTTTTG
                     TVSVIDTSSPSATVKSIDVGLHPTALHASGTALFVANTNSDTVSVIDTAKDAVVQTIA
                     TQPWPQSKVGYQPTGIALTKDGHLLVTLGRANAVAVYRYGGRPQEPVSYVGLLPTDYY
                     PANVATVGDRIVVTNTRGIDARGPAITTNKGYGVPVVSGHDTHSTTASLTSFTLPTDQ
                     QIGRYTSTVFAQNAWGRNDVKQAGGDKAAAVPVPVRVGDPSTIKHVFMIVKENRTYDQ
                     VYGDDSRGNGDPSLVQFGQKVTPNQHALAKQFGLYDNLYNIGTNSAEGHNWLMQGDNP
                     EYTESSAGEYVRSYDTEDDALGHQRSGFLWTAVQSAGKTARNYGEFTQFLTKPAGATW
                     QKYYCTAKQVAAGGAPSALTDPSIKTDTQSPIPSLNQI"
     gene            complement(1989..3359)
                     /locus_tag="VGN19_08500"
     CDS             complement(1989..3359)
                     /locus_tag="VGN19_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009081978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7195965.1"
                     /translation="MSSALAETAVVVRPTTRPAALGASFRFELVKLLSQWRIRILLVA
                     CWIGPAVFIAAASGQSSLPSDTVFGRWMFVTGWAGSLVVLSFSCTWALPLLTALVAGD
                     VFAAEDRLGTWRHLVMAIRSPRRIFVAKSLASTAVIVVMEAGLAISSIGGGIAAVGAQ
                     GLVGLDGASMDTGHSAKLVLLAWAYVGAASLAYAAVGLLGSVVLGRSPMGLLVPALLA
                     FVLQAAQLLPMPAAVRLALPSQTFLAWRGLFTGSAQTGPLVVGLFVSIAWIVVATTLA
                     YLLFVRRDFADLAYDGSGIRSLMAGALSLVALTAVSIAVIAAVTPATGSGIDRPKVER
                     SLATSFAHLYRLQSRELHRPDVTEKQLRTSASCYRAGSQGNDQGPGNDWRCVVSWHIP
                     DATAVGTAIYQLDVAADGRYVADGDGPREVNGYFQVRTPNGDTPNPLWQVDGLVDLSS
                     GNSSKG"
     gene            complement(3356..4303)
                     /locus_tag="VGN19_08505"
     CDS             complement(3356..4303)
                     /locus_tag="VGN19_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7195966.1"
                     /translation="MRSRGITKHFADVVALDGVDLDIPSGHVHGLVGPNGAGKTTLLG
                     LLLGLSVADQGTLEILGTPVNRVLGVPDGVAGFVDGPGLYPSLTARQNLAALAALRGY
                     GAHRAREVDHSLEQVGLADVADERLRGFSLGMRQRLGLAAALLTRPRLLVLDEPSNGL
                     DPAGKRHVYRVLADLAAQGVAVVISSHHMDDLATLCSEVTILASGRVVFSGTVSKLAA
                     ESGRLDYRVVTSDATTARRVATQTPGLDVMGAQHPVESVDDAVVVRGPVSAVDELIFR
                     LVGARVAVRELRPVVPPLEAAFLALTGTADAAAPEEDPR"
     gene            4608..5300
                     /locus_tag="VGN19_08510"
     CDS             4608..5300
                     /locus_tag="VGN19_08510"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEV7195967.1"
                     /translation="MAQPTLRTSPQHVPRRVRLGLACWLVQPFYVVVELLVAAGASAQ
                     YSLRDDTISALGQVGCSPGHYGSVVPMCSGSHVVLNAAFLVFGLLRAVGAILVRQLLD
                     PTWWRAAAVTVWVVSGICSAAVGLAPVDRVPLLHSLAAGPVFLLQPFAVVATAIALRR
                     TADGRVGVSTAGLVVFAATVVGTVSFGLGIGLSTWVGVLERLALWPAYVWLGLVAATL
                     LTQLRVTDRRVD"
     gene            complement(5413..5661)
                     /locus_tag="VGN19_08515"
     CDS             complement(5413..5661)
                     /locus_tag="VGN19_08515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195968.1"
                     /translation="MAGRPRKLFDAGAAGGAAVSVVDGDASGTAPTLGDDNANGADAV
                     PGDDVAHPGSASKALRVTTEPTARTVLHFRDEVPVRRI"
     gene            5714..6196
                     /locus_tag="VGN19_08520"
     CDS             5714..6196
                     /locus_tag="VGN19_08520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195969.1"
                     /translation="MATPQPGRRLYACYGGSRSGVNQGVYDCSTSTDYEVACWRATLR
                     ATMYCLQNPFGKQLAQLPLTNTSLPAAPGLAVASPLALILDDGAHCLIRDGGSWPTLA
                     AYPDWIGTYSCNTSNDRILWASDGDGVNRTNRTWTVTSTGKSNTPVLHAVKVAYFAGN
                     "
     gene            complement(6222..>7591)
                     /locus_tag="VGN19_08525"
     CDS             complement(6222..>7591)
                     /locus_tag="VGN19_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEV7195970.1"
                     /translation="LLDAALERSSHKPESVIVLQRQQARAAVGERDTEWEEMDWDELM
                     RDAEPADCVEVAATDPLYILYTSGTTGRPKGIVRDNGGHAVALRWSMENIYAIGPGDV
                     WFTASDVGWVVGHSYIVYAPLLTGATSVLYEGKPVGTPDAGAFWRVIADYGVKAMFTA
                     PTAYRAIRREDPEGELMRAYDLSSLQTVFLAGERLDPDAYQWATSHLGVPVVDNWWQT
                     ETGWPIAANLRGLEPMPIKPGSPSVPVPGYAVHILGENGQALPPGEEGAICIRLPMPP
                     GTLPTLWEDDERYVAGYLSAFDGYYLTGDGGLVDEDGYLFVMGRTDDVLNVAGHRLST
                     GSIEAALAGHEAVAECAVIGVADELKGQVPRALVVVKAGVDPVTDGDRIRAELVQRVR
                     DEVGAVASLRQVDIVQALPKTRSGKILRKTMRELAAGRTPGVPGTIEDASVLDTLAPL
                     LRPHA"
BASE COUNT         1155 a         2544 c         2650 g         1242 t
ORIGIN      
        1 gatctggttc agcgacggga tcggcgactg cgtgtccgtc ttgatcgacg ggtccgtcag
       61 cgcgctgggg gcgccgccgg cggcgacctg cttggcggtg cagtagtact tctgccacgt
      121 cgccccggcc ggcttggtca ggaactgggt gaactcgccg tagttgcgcg cggtcttgcc
      181 cgcggactgg actgcggtcc aaaggaaccc ggagcgctgg tgcccgaggg catcgtcctc
      241 ggtatcgtag ctgcgcacgt actcaccggc gctggactcg gtgtactccg ggttgtctcc
      301 ctgcatcaac cagttgtgac cctccgcgga gttggtgccg atgttgtaga ggttgtcgta
      361 gaggccgaac tgcttcgcca gcgcgtgctg gttgggggtg accttctggc cgaactggac
      421 gagcgacggg tcgccgttgc cccgggagtc gtcgccgtag acctggtcgt aggtgcggtt
      481 ctccttcacg atcatgaaga cgtgcttgat cgtggacggg tccccgacac ggaccgggac
      541 cgggactgcg gccgccttgt ctccgccggc ctgcttgacg tcgttcctgc cccaggcgtt
      601 ctgggcaaac accgtcgagg tgtacctgcc gatctgctgg tcggtgggca gcgtgaagct
      661 ggtcagggac gccgtggtgc tgtgcgtgtc atggccactg acgaccggga cgccgtagcc
      721 cttgttcgtg gtgatggcag ggccacgagc atcgatgcca cgggtgttcg tgacgacgat
      781 ccggtcgccg actgtcgcca cattcgccgg gtagtagtcc gtcggcaaca ggccgacgta
      841 gctcaccggc tcctgggggc ggccaccgta ccggtagacc gcgaccgcat tcgcccgtcc
      901 gagggtgacc agcaggtggc cgtccttggt cagtgcgatg cccgtgggct ggtatcccac
      961 cttggactgc ggccacggct gggtggcgat cgtctggacg acggcgtcct tggcggtgtc
     1021 gatgaccgag acggtgtcgc tgttggtgtt ggcgacgaac agcgcggtgc cggaggcgtg
     1081 gagcgccgtt ggatgcagtc cgacgtcgat ggacttgacc gtggcagacg gggacgaggt
     1141 gtcgatgacg ctgaccgtgc cggtcgtggt ggtgtccagg tagggatccg tgggcacgtt
     1201 ggtgccgtac gagttcaggg cggtctcatg cggcttcgca gcccggccgc cttcgttgct
     1261 gacgtacagc ttgctgccct ggaaaatgag ctggcgcggt gcgttgccca ccttccaggt
     1321 cgccttgacc actcctgttg ccgggtcgag cgcggccacc gtgttctggc cgttcatcgc
     1381 gacatagagg gtggatccgt ctggtgagta tgccgacttt cccggcagcg cggaggcgcc
     1441 gttcagggca ggcagcggga agcgcgttgc ggttcccagg gtgccgtcgg ggttgaccgg
     1501 aaagcgggtg agagcgctgg cctgggaaag ccagaggaac ttgccgtccg gtgagtaggt
     1561 cgggccttcc tggccgacgc tgccatccgc gaggttctgg tcgacaccgg aggccttacc
     1621 gacccggtag atcagcttgt tggcggccag gtcgaagacc tggagcacga cgcccttgtc
     1681 ggcgctgctg gcagcgagga acctgccgcc cgggctgacg gtcgatccca tgaacttgcc
     1741 gtactgggtc atgacccggg cgccgatcgg cttgatcacc tggttgtcgg agatctggag
     1801 cccgtcggcg tactgggtgc cgaccgtgcg gttgccgaag gcgtcggtcg tggcgtaggc
     1861 aatcccgcca ccggcaaggg tgagggccac cgtgctgact agggccatcc ggacccgacg
     1921 atgggtgcta ccgggctgct cgggactggt gggcgagatg cttcgccgct gttgcgtgac
     1981 ctgcatgttc atcctttcga ggagttgcct gacgacaggt cgacgaggcc gtcgacctgc
     2041 cataacgggt taggtgtgtc cccgttcggg gtgcgcacct ggaagtagcc gttcacctcc
     2101 cttggcccat caccgtcggc gacgtaccgc ccgtctgcgg ctacgtcgag ctggtagatg
     2161 gcagttccga cggcggtggc gtccgggatg tgccacgaca cgacacaacg ccagtcgttt
     2221 ccagggccct ggtcgttccc ctgggaccct gcccggtagc aggacgcact ggtccgcagc
     2281 tgcttctcgg tcacgtccgg ccgatggagc tcgcgtgact gcagccggta caggtgggcg
     2341 aacgacgtcg cgagtgaccg ctccaccttg ggtctgtcga tccccgaacc agtcgcgggg
     2401 gtcaccgctg cgatgactgc gatgctcact gcggtcaggg cgaccaacga gagggcgccg
     2461 gccatcaaag agcggatccc ggacccgtcg taggcaaggt ccgcgaagtc ccggcggacg
     2521 aacaacaggt aggccagggt cgtcgcgacc acgatccagg cgatgctgac gaacaggccg
     2581 acgaccagtg gcccggtctg cgctgagccg gtgaacaggc cacgccaggc gagaaatgtc
     2641 tggctgggta gggcgaggcg tacggcggca ggcatgggca gcagctgcgc cgcttgcagc
     2701 acgaaggcga gcagcgccgg gaccaacagg cccatcggcg acctgcccaa cacgacggag
     2761 ccgagcagac cgacggcagc gtaggcaaga gatgccgcgc ccacgtacgc ccaggcgagc
     2821 agcaccagct ttgcgctgtg tcccgtgtcc atgctcgcgc catcgagtcc gacgagcccc
     2881 tgggcgccga ccgctgcgat gcctccaccg atgctcgaga tggccaagcc cgcctccatg
     2941 acgacgatca cggcggtgct ggccagcgac ttggcgacga agatgcgccg cggtgagcgg
     3001 atcgccatga cgaggtgtcg ccacgtaccc aggcggtcct ccgcagcgaa gacgtcgccg
     3061 gccaccagcg ccgtcagcag tgggagcgcc caggtgcacg agaagctcag tacgaccagc
     3121 gagccggccc agccggtaac gaacatccac cgtccgaaga cggtgtcgct gggcagcgag
     3181 ctctgcccgc tcgcggctgc gatgaagaca gctggtccga tccagcaggc caccagcagg
     3241 atgcgaatcc gccactgcga gagcagcttg acgagttcga accggaagct ggcaccgagg
     3301 gcggccggac gggtggtggg acggacgacc actgccgtct ctgccagagc ggagctcatc
     3361 gggggtcctc ctccggtgcc gcggcgtccg ctgtcccggt gagcgcgagg aacgctgcct
     3421 ccagcggcgg caccacgggt cgtagttcgc gaaccgccac gcgggcgccg acgagccgga
     3481 agatcagctc gtccaccgcg ctcaccggac cccggacgac gacggcgtca tccacggact
     3541 ccaccgggtg ctgcgccccc atcacgtcca gtcccggcgt ctgcgtggcg acgcggcggg
     3601 ccgtggtcgc atcggaggtg acgacccggt agtcgagacg cccgctctcc gccgcgagct
     3661 tgctgacggt gccggagaag accaccctgc cgctggccaa gatcgtgacc tcggagcaca
     3721 gggtggcgag gtcgtccatg tggtggctgg agatcaccac cgcaacgccc tgcgcggcca
     3781 ggtcagcaag cacccggtac acatgccgct tgcccgcggg gtccaggccg ttggacggct
     3841 cgtcgagcac cagcagccgc ggcctggtca gcaacgcggc cgccagaccc agacgttggc
     3901 gcatgcccag cgagaaaccc cgcaggcgct cgtcagcgac gtcggcgagg ccgacctgtt
     3961 ccagcgagtg atcgacctcg cgggcacggt gggccccgta gccgcggagc gcggccagag
     4021 ccgcgaggtt ctgtcgcgcg gtcaacgacg gatagagacc gggcccatcg acgaatcccg
     4081 cgaccccgtc gggcactccc agcactcggt tgacgggagt gcccaggatc tcgagggtgc
     4141 cctggtctgc cacggacagg ccgagcagga gcccgagcag cgtggtcttg ccagcgccat
     4201 tggggccgac gaggccgtgt acgtggccac tggggatgtc gagatccacc ccgtcaagcg
     4261 cgacgacgtc ggcaaagtgc ttggtgattc cacgcgaccg cactgcgggc gaactctcca
     4321 ctgggtcctc tccaatcgtc caaaccacgg agaggctagg caggcgggaa ggtgaaagag
     4381 cggcaggaat ctgaacccca agcgaacagc gggtgcctgg gtcgcgtcgc ccgcaccctt
     4441 gaagcgcccg gcgcacgtgc cacggcccgg aaacgcgctc gcgccgacca ggaactcgcg
     4501 ttcgggcggc gaccggggca caccacgccg acgcctgcac ccggtaaccg tgtccacggc
     4561 acttgggctc gcgacccggg gtcgaatact gcagctacgg tcgggccatg gcgcaaccaa
     4621 cgctccgcac cagccctcag cacgtccccc gtcgcgtgcg cctggggctc gcctgctggt
     4681 tggtgcagcc gttctatgtc gtcgtcgagc tactcgtggc ggcgggcgct tcggcgcagt
     4741 acagcttgcg agacgacacg atcagcgcgc tgggacaggt cggctgctcg ccgggtcact
     4801 acggttccgt ggtgccgatg tgctccggca gccacgtcgt cctcaacgca gccttcctgg
     4861 tcttcggcct gttgcgggcg gtcggtgcga ttctggtgcg ccagctcctc gacccgacct
     4921 ggtggcgagc ggccgccgtg actgtgtggg tggtgtccgg gatctgctcg gccgcagtgg
     4981 gactcgcacc ggtcgaccga gtccccttgc tgcattcctt ggccgcagga ccggtcttcc
     5041 tgctgcaacc gttcgctgtg gtcgccaccg cgatcgcgtt gcgccgcact gccgacggcc
     5101 gggttggcgt gagcactgcc ggactcgtcg tgttcgcggc gaccgtcgtc gggaccgtgt
     5161 ctttcgggct ggggataggg ctatcgacct gggtcggcgt tctggagcgc ctcgccctgt
     5221 ggccggccta cgtgtggctt ggtctggtcg ccgcgacctt gctcacccag ctgcgggtca
     5281 cggaccggcg cgtcgactga ctgtcgcgca atcatccgat tgcccgatca tcaagaccgc
     5341 gcgccggatt atgctccgaa tgcaagggac gtgtcgaggc tgtctcgacc gcccgctcgg
     5401 caggactggt cgtcagatgc gccgaactgg tacttcgtca cggaagtgca ggaccgtgcg
     5461 cgctgtcggt tcagtcgtca ccctgagcgc cttgctcgcg cttcctgggt gtgcgacatc
     5521 gtcgcctggt acggcgtcgg ccccgttcgc gttgtcgtcg ccgagcgtcg gtgcggtgcc
     5581 ggaagcgtcc ccgtccacga cagagacggc cgcgcccccg gccgcgcccg cgtcgaacag
     5641 cttccggggc cggcccgcca cgcagctggt ggtgttgcac cccgttcacc atggcaagcc
     5701 agcgaacggc tacgtggcga caccacagcc gggtcgtcgc ctttacgcgt gctacggggg
     5761 ttcccgcagc ggagtgaacc aaggggtcta cgactgcagc acctcgaccg actacgaggt
     5821 ggcctgctgg cgggcgaccc tccgggccac gatgtactgc ctgcagaacc cgttcggcaa
     5881 gcagctggcc cagctccccc tgaccaacac ctccctacct gcggcccccg gtctggccgt
     5941 ggcatcgccg ctcgccctga tcctggacga cggcgcgcac tgcctgatcc gcgatggtgg
     6001 atcctggccg acgctggccg cctacccgga ctggatcggc acctactcct gcaacacttc
     6061 gaacgaccgg atcctgtggg cgtccgacgg cgacggtgtc aaccgcacga accgaacgtg
     6121 gacggtgacc agcaccggaa agtcgaacac cccggtgttg cacgccgtca aggtcgccta
     6181 cttcgccggc aactgaccaa ggggccgctc cagctcgcgc ctcaggcgtg cggacgcagt
     6241 agaggagcga gggtgtccag cactgaggcg tcctcgatcg tcccgggcac gcccggggtc
     6301 cggccggcgg ccagttcgcg catcgtcttg cgcaggatct tgccggacct ggtcttgggg
     6361 agcgcctgca cgatgtcgac ctggcgcaag gacgccacgg ctccgacctc gtctcggacg
     6421 cgttgcacga gctcggcgcg gatccgatca ccgtcagtca ctgggtcgac cccagctttg
     6481 accacgacga gggcccgggg gacctgaccc ttgagctcgt cggccacccc gatgacggcg
     6541 cactccgcca cggcctcatg cccggccagc gctgcttcga tggatcccgt ggacagccgg
     6601 tgacctgcga cgttcaggac atcgtcggtg cgacccatca cgaagaggta gccatcctcg
     6661 tcgacgagcc caccgtctcc ggtcaggtag tacccatcga aggcggacag gtatccggcg
     6721 acgtaccgct cgtcgtcctc ccagagagtg ggcagcgttc ccggaggcat cggcagccgg
     6781 atgcagatcg cgccctcctc gcctggagga agagcctggc cgttctcgcc caggatgtgc
     6841 acggcatacc cgggcacggg caccgacggc gagccaggct tgatcggcat cggctccagg
     6901 ccgcgcaggt tggccgcgat cggccagccg gtctcggtct gccaccagtt gtcgacgacg
     6961 gggaccccca ggtgggaggt cgcccactgg taggcgtccg ggtcgagccg ctccccggcg
     7021 aggaacacgg tctggaggga cgagaggtcg taggcgcgca tcagctcgcc ttcggggtcc
     7081 tcgcgcctga tcgcgcggta tgccgtgggc gcggtgaaca tggccttgac gccatagtcg
     7141 gcgatcaccc gccagaacgc tcccgcgtca ggggtgccca ccggtttgcc ctcgtagaga
     7201 acggaagtcg cgcccgtcaa gagcggggcg tagacgatgt aggagtggcc gacgacccac
     7261 ccaacgtcgc tcgccgtgaa ccagacgtcg cccggcccga tcgcatagat gttctccatg
     7321 gaccaccgca gtgccaccgc atggccgccg ttgtcgcgca cgatgccctt gggccggccc
     7381 gtggtgccgg aggtgtagag gatgtagagc gggtcggtgg cagcgacctc gacgcagtcg
     7441 gccggttcgg cgtcccgcat cagctcgtcc cagtccatct cctcccattc cgtgtcgcgc
     7501 tcgccgacgg cggcccgagc ctgctggcgc tgcaggacga tgacggactc gggcttgtgg
     7561 ctgctgcgct cgagcgcagc gtcgaggagc g
//
LOCUS       DASYFY010000427         3578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1449131, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000427 DASYFY010000000
VERSION     DASYFY010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1449131"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /locus_tag="VGN19_08530"
     CDS             complement(<1..304)
                     /locus_tag="VGN19_08530"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013398751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEV7195971.1"
                     /translation="MIETEAPAQPRVGALDGLRGCAVLLVIAAHSLTPQSQTLGAAGV
                     TIFFVLSGYLITSILLRSQSGKLGDRLRSFYGRRARRLLPALALVLLFDSAVRITTG"
     gene            complement(428..955)
                     /locus_tag="VGN19_08535"
     CDS             complement(428..955)
                     /locus_tag="VGN19_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEV7195972.1"
                     /translation="MSTAAGNLHWEPADRHTELLAPPVAAAISRTPTARVASIDATLA
                     DTAAFCAAYGVALEHSANCVVVAGKRGGEVRYAAVLVLATDRADINGVVRRHLDVRKI
                     SFAAMADAVVLTEMEFGGITPVGLPADWPVLVDRAVLAAGEVVIGSGIRGSKLLVHAD
                     ELETLPSAEVLDLAQ"
     gene            complement(965..2422)
                     /locus_tag="VGN19_08540"
     CDS             complement(965..2422)
                     /locus_tag="VGN19_08540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195973.1"
                     /translation="MTTPVPTTARPQTPETPTARPDTPAPAILRWGPLGAFVLLLLAL
                     ARHAGEGISDPDTLWHILAGDHLWATGQFAGPDSLSHFTTGPWILHEWLPELALALAN
                     HLGGLAAVAWLAQAGRLAVCLALLVLCRRVAGPLAAALVAGAAILGTADSLSPRPQLV
                     GFVFLAVTVGAWLRTAMDTRPRWWLVALSWLWACSHGTWVVGITVGAATVAGLALDGR
                     LDRKQAARLAAIPVLSLAAAALTPVGPRLFESFVTIRAVSPYISEWRTPTLSSMSVLA
                     TGVLAVAVPLLWLVRRKRVSWTHAGLWACGVAWAAMSMRSVALGVIILAPLAAEALDG
                     VLGRPRSAPGRHEWRFVGAAAALSLVLAGLLAAAGPRTPTGVPHRLDTSLSALPAGSV
                     VYNTDRLGGWLMWSHPALTPTSDTRVELYGPTRSKAYLAILSARPGWTATFDAYHPAA
                     ALIEEHTGLATALLARGWKRVGSDGDYVLIEPPAR"
     gene            complement(2426..>3578)
                     /locus_tag="VGN19_08545"
     CDS             complement(2426..>3578)
                     /locus_tag="VGN19_08545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195974.1"
                     /translation="LAFYTRGGLGSVFALFVTPMIRTWSRFVVSIGLFGLLAVGLWLT
                     SLGHRRGRRALVVAATVVLVVGVLDQTSPTAAPQYAALQAQQTELTAYTRTLARAVGN
                     CPVFQLPVVAFPEEPPPGAMDDYDHFLPTVTSPAGLTWSYAAIRGTARADWQFALPVV
                     DQARLLDDLAAAGFCAVEIDHQGYAGSTDPGTATERLAGAPVATAPRSHLAAYNLRPV
                     AARLAATAGSAAVTTLREEVLHPLFASMSGSLIDATTTEPFQWTGPQTTVTVSNLGSS
                     TATAILTFTVWGNGAAPRTVRVHSPGVPDSVVTVSDSRPHPVSLEVAARPGTTDVTVS
                     ATRDPVAVAGSQGAMLASLKVADLRLAADSGAPAASLQQFASASPRSLR"
BASE COUNT          579 a         1197 c         1314 g          488 t
ORIGIN      
        1 ggccagtggt gatgcggaca gcgctgtcga agagcagcac cagggcaagt gccggcaaca
       61 ggcgtcgtgc tcgtcgaccg tagaaggagc ggagccgatc acccagtttc ccggactggc
      121 tccgcagcag gatcgacgtg atgaggtagc cggagaggac gaagaagatg gtgacccctg
      181 ctgctcccag cgtctggctc tgaggcgtca gggagtgagc agcgatcacg agcagtactg
      241 cacatccccg aaggccgtcg agggcaccaa cccgtggctg ggctggcgcc tcggtttcga
      301 tcaccggtcg agtctgaggg ttcggtgtcg gtggtgaacc gcattcgcgc cacttggtgt
      361 cggcgttggg cgggccgcgc cgtcaatctg gccgtttggg ggagaccggc gccccgggcg
      421 gaggccgcta ctgcgcgagg tcgaggacct cggcgctcgg caaggtctcc agctcgtcgg
      481 cgtggaccag aagcttgctg cccctgattc cgctgccgat gacgacctct ccagctgcaa
      541 ggacggcccg gtcgacgagg accggccagt cagcaggcaa cccgaccggg gtgatgcccc
      601 cgaactccat ctcggtcaac accacggcgt ccgccatggc ggcaaagctg atcttgcgca
      661 cgtcaaggtg tctgcggacc actccgttga tgtcggctcg gtcggtggcc aagacgagca
      721 ccgcggcata ccggacctcg ccaccgcgct tgccggccac gaccacgcag ttcgccgaat
      781 gttcgagcgc cacgccgtag gcggcgcaga acgccgcagt gtccgccagg gtggcgtcga
      841 tggaggccac cctcgccgtc ggtgtccgac tgattgccgc cgcgacgggt ggggcgagaa
      901 gttcggtatg ccggtcggcc ggctcccagt gcaggtttcc tgccgcagtg ctcacggcgc
      961 gagactaccg agcgggtggt tcgatcagca cgtagtcccc gtcgctccct acccgtttcc
     1021 agccgcgggc gagaagtgcg gttgccagcc ctgtgtgttc ctcgatcagg gcagcggcgg
     1081 ggtggtacgc gtcgaaggtg gcggtccatc cgggccgagc gctcaggatc gcgagatacg
     1141 ccttggaccg tgttgggccg tagagctcca ccctggtgtc ggatgtcggc gtgagcgccg
     1201 ggtgcgacca catcagccac ccgccgagac ggtccgtgtt gtagacgacg gaccctgcgg
     1261 ggagcgccga gagagacgtg tcgagccgat gcgggacgcc cgtcggtgtc cgcggtcccg
     1321 cggccgccag gagtcccgca agcaccagac tgagcgcggc tgcggcgccg acgaatctcc
     1381 actcgtgtcg tcctggggct gacctggggc ggccgagtac cccatcgagg gcctctgcgg
     1441 cgagcggagc caggatgatc acgcccaggg caacactgcg catcgacatg gcggcccagg
     1501 ccaccccgca cgcccacagc ccagcgtgtg tccaggagac tctcttgcga cggaccagcc
     1561 acagcagggg gacagcaacg gcgagcactc ccgtggccag gacagacatg ctcgacagcg
     1621 tcggggtgcg ccattccgag atgtacgggc tcacggcgcg gatcgtcacg aagctctcga
     1681 acagtcgcgg gcccactggg gtgagggctg ctgccgcgag gctgagcaca gggatcgctg
     1741 ccagccgggc tgcctgcttc cggtcgagcc ggccgtccaa cgccagaccg gccacggtcg
     1801 cagctcccac ggtgatcccc acgacccagg tcccgtgcga gcacgcccag agccaggaca
     1861 gcgcgaccag ccaccatcga gggcgagtgt ccatcgccgt acgaagccac gcgcccacgg
     1921 tcacggcgag gaagacgaac cccacgagct gcggacgcgg gctgagactg tcggccgtgc
     1981 cgaggatcgc ggctccggcg accagcgccg cggcgagcgg cccggccacc cgtcggcaca
     2041 gcaccagcaa tgccaagcag accgccaggc gaccggcttg ggccagccag gcgacggcgg
     2101 ccagcccccc aaggtggttg gccagggcaa gcgccagctc gggcagccat tcatggagga
     2161 tccaggggcc cgtggtgaag tgggacagcg agtcggggcc ggcgaactgc cccgtcgccc
     2221 acaggtggtc gccggcaagg atgtgccaca gcgtgtcggg gtcgctgatg ccttcgccgg
     2281 cgtgtcgcgc cagcgccagg agcaagagga cgaaagcccc caacggtccc cagcgcagga
     2341 tggccggtgc cggggtgtct gggcgcgcgg tcggcgtctc cggggtctgc gggcgggcgg
     2401 tcgtcggtac gggagtggtc acgagctacc tcagggaacg cgggctggcg gaggcgaact
     2461 gctgcaggct ggccgcgggg gctccggagt cggccgccag gcgcaggtcg gccaccttga
     2521 gcgaggcgag catcgcgccc tggctccctg cgaccgcgac gggatcccgg gtcgccgaca
     2581 cggtgacgtc cgtcgtgccg ggcctcgcgg caacctccag gctcactggg tgcggccggc
     2641 tgtcggacac cgtcacgacg gagtcaggga cgccggggct gtgcaccctc accgtccgtg
     2701 gcgccgcgcc gttcccccag accgtgaagg tcaggattgc cgtggccgtt gacgaaccga
     2761 ggttgctgac cgtcacggtg gtctgcgggc cggtccattg gaagggttcg gtcgtggtcg
     2821 cgtcgatcag cgatccactc atgctggcga agagggggtg cagcacctcc tcgcgcaggg
     2881 ttgtgaccgc cgctgaacct gccgtggcgg ccagtcgtgc ggccaccggt cgcaagttgt
     2941 aggccgcgag atgcgaccgg ggagcggtcg ccacgggtgc tccggcgagc cgttcggtgg
     3001 ccgtccccgg gtcggtcgac ccggcatacc cctggtggtc gatctcgacc gcgcagaatc
     3061 cggcggcggc gaggtcgtcg agcagccgcg cctggtcgac caccggcaac gcgaactgcc
     3121 agtccgctcg ggcggtcccg cggatcgccg cgtagctcca cgtcagaccc gccggtgagg
     3181 tcaccgtggg cagaaaatgg tcgtagtcgt ccatcgcgcc ggggggcggc tcttcgggaa
     3241 aggcaacgac gggcagctgg aacaccggac agtttccgac cgcgcgagcc agggtcctgg
     3301 tgtacgcggt gagctcggtc tgctgagcct ggagggcggc atactgcggc gcggcggtcg
     3361 ggctggtctg gtcaagcacg cccacgacga gcaccacagt cgcggcaacg accagagcgc
     3421 gacgaccgcg acggtgtccc agggaggtca gccacaggcc gaccgcgagg aggccgaaga
     3481 ggccgatgga gaccacgaac cgcgaccagg tgcggatcat cggggtcacg aacagcgcga
     3541 acaccgaacc gaggccgcca cgggtgtaga aggccagt
//
LOCUS       DASYFY010000428         2819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_817959, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000428 DASYFY010000000
VERSION     DASYFY010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817959"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VGN19_08550"
     CDS             <1..399
                     /locus_tag="VGN19_08550"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEV7195975.1"
                     /translation="SFVKPYGSENEHPGYASESNGSDHLVDLLKTIASGPQAKKTLVV
                     VTYDEFGGSYDHVAPPKTDAWGPGTRIPALVLSAGMRSSGVSHQVFDTTSILATIEHA
                     FGLAPLSSRDATVSDLSRAVAIGGKQRSDS"
     gene            complement(522..1013)
                     /gene="ispF"
                     /locus_tag="VGN19_08555"
     CDS             complement(522..1013)
                     /gene="ispF"
                     /locus_tag="VGN19_08555"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEV7195976.1"
                     /translation="MDLAGMPRTGIGVDVHAFAVEGARELWLAGLSWAGERGLAGHSD
                     ADVACHAACDALFSAAGIGDLGSHFGTDRPELEGASGLTLLAEAARLVREAGFDVANV
                     AVQVIGNRPKIGSRRGEAQRAMSEAVGAAVSLSGTTTDGLGLTGRGDGIAAIATALVV
                     PAP"
     gene            1112..1705
                     /locus_tag="VGN19_08560"
     CDS             1112..1705
                     /locus_tag="VGN19_08560"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7195977.1"
                     /translation="MTGPLPVPALRGSTVTLRTHLATDLDPVFERCLDEDTKRFTTIP
                     LEYTRELAEEYLASIMEPSEELISWAIEVGGEYAGTIDLRVLPVDAGAGALGFVTHPR
                     FRGRGVMSEAVGVVVSHALDTLGWQLVRWEAHAGNVGSAKAVWRNGFPVPTFVPDALL
                     ERGAVLDGWISTLRVGMAREPVAPWNQVYAALAAASA"
     gene            complement(1707..2381)
                     /gene="ispD"
                     /locus_tag="VGN19_08565"
     CDS             complement(1707..2381)
                     /gene="ispD"
                     /locus_tag="VGN19_08565"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEV7195978.1"
                     /translation="MSVAVVLVAAGQGTRLGAVQPKAFVDLAGQSLLEHAVQRAFAAP
                     ETSHIVIVAPASHQSEAGAIASRSARPQDVDVVVGGAVRSQSVAAGLKALRPGDGIVL
                     VHDAARALAPPALFSRLVHEVRAGHPAVVPGLLVADTIKQVDHRGVVVATPDRGSLRA
                     VQTPQAFLREVLEHAHASGADATDDAALVEAVGGHVRVVQGEPLAFKITTADDLALAE
                     RHLSDR"
     gene            complement(2378..>2819)
                     /locus_tag="VGN19_08570"
     CDS             complement(2378..>2819)
                     /locus_tag="VGN19_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014136563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HEV7195979.1"
                     /translation="GAALIEEINTRTIKGEEKIYLKLKVAQGDLTIEVPAENCEDIGV
                     RDVVGQEGLDKVFSVLRAPHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDK
                     DRGLSAGEKRMLAKARQILVSELALAEKTNEDKAEAILDEVLAS"
BASE COUNT          428 a          987 c          977 g          427 t
ORIGIN      
        1 agcttcgtca agccgtacgg gtcggagaac gagcacccgg gctacgccag cgagagcaac
       61 ggcagcgacc acctggtcga tctgctgaag acgattgcct ctggcccgca ggccaagaag
      121 accctcgtgg tcgtgaccta tgacgagttc ggtgggtcct acgaccacgt cgcgccgccg
      181 aagacggacg cctggggccc cggcacccgg atccccgctc tggtgctgtc tgccggcatg
      241 cggagctcgg gggtcagcca ccaggtcttc gacaccacgt cgatcctggc gacgatcgag
      301 catgccttcg ggcttgcgcc gctgtcgtcg cgcgacgcca cggtcagcga cctgtcgcgg
      361 gccgtcgcta tcggcgggaa gcagcgcagc gactcctgac cgcccctgct ccccctgact
      421 gaactacgaa agtcctgcgt gtcgccgcct cacggggccc gacacgcagg actttcgtag
      481 ttcggtcggg tcagggtgcg gcggcgacca gttcggtcgg gtcagggtgc ggggacgacc
      541 agtgcagtcg caatggcggc gatcccgtcc ccgcgtccgg tcagcccgag gccgtccgtc
      601 gtcgtgccgc tgagcgacac cgcggcgccc actgcctccg acatggctcg ttgcgcctcg
      661 ccccggcggc tgccgatctt gggacggttg ccgatgacct ggaccgccac attggccacg
      721 tcgaagccgg cctcacggac gagccgggca gcctcggcga gcaaagtcag accgctggcc
      781 ccttcgagct ccgggcgatc ggtaccgaag tggctgccga ggtccccgat gccggcggcg
      841 gagaacaggg cgtcgcacgc cgcatgacaa gcgacatccg cgtcggaatg gcccgccaga
      901 ccgcgctcgc cagcccagga caagcccgcg agccacagct cgcgagcgcc ctcgaccgcg
      961 aaggcatgga cgtcgacacc gatgcccgtt cgcggcatac ctgcaaggtc catggcgccc
     1021 atccaaccat cgaggccacc ggggcagccg aaacccgggc gaacgaaaac ccggtgagcg
     1081 gccacccctg ccgttgctag cgttgcggcg catgaccggc cccttgcccg tacccgcact
     1141 ccggggctcc acggtgaccc tgcgaactca cctcgctacc gacctcgacc cggtgttcga
     1201 acggtgcctg gacgaggaca ccaaacgctt cacgaccatc ccgctggagt acacccgcga
     1261 gctggccgag gagtacctcg ccagcatcat ggagcccagc gaggagctca tctcgtgggc
     1321 gatcgaggtc gggggagagt atgccgggac cattgacctg cgagtcctgc cggtggatgc
     1381 gggggccggt gccctcgggt tcgtgacgca cccccggttc cgcgggcgcg gcgtcatgtc
     1441 ggaggcggtc ggggtggtcg tcagccacgc cctggacacg ctggggtggc agctggtccg
     1501 ctgggaggcg cacgccggga acgtgggcag cgccaaggcc gtgtggcgta acggattccc
     1561 ggtgccgacc ttcgtgcccg acgcgttgct tgagcgcggc gccgtgctcg acggctggat
     1621 cagcacgttg cgcgttggca tggcacgcga gcccgtggct ccctggaacc aggtgtatgc
     1681 cgcgcttgcg gcagcgtccg cgtgagctac cgatccgaga ggtgacgttc cgccaacgcg
     1741 aggtcgtcgg ccgtggtgat cttgaacgcc agcggttcac cctggaccac ccggacgtgc
     1801 ccgccgaccg cctcgaccag ggcggcgtcg tcggtggcgt cggcgccgct ggcgtgggcg
     1861 tgctcgagaa cctcccgcag aaaggcctgg ggcgtctgca cggcgcgcag gctgccgcga
     1921 tccggggtcg ccaccacgac cccacggtgg tcgacctgct tgatggtgtc tgcgacgagg
     1981 aggcccggga ccacagccgg gtgtccggcc ctcacctcgt gcacaagtct ggagaagaga
     2041 gcgggcggcg cgagggctcg agccgcgtcg tggaccagga cgatcccgtc gccaggccgc
     2101 agcgccttga gtccggcggc caccgactgg ctgcgcactg ccccacccac gaccacgtcg
     2161 acatcctgag gccgtgcgct gcgggacgcg atcgcgcccg cctccgactg atgggaggcg
     2221 ggcgcgacga tgacgatgtg cgacgtctcg ggtgcggcga acgcacgctg aaccgcgtgc
     2281 tcgagcagcg actggcccgc caagtcgacg aaggccttgg gctgcaccgc cccgagtctg
     2341 gtcccctggc cggcggccac gaggacgacg gcgacgctca ggaggcgagg acctcgtcga
     2401 ggatggcctc ggccttgtcc tcgttcgtct tctcggccag ggcaagctcg gagaccagga
     2461 tctgacgtgc cttggcgagc atgcgcttct caccagcgga caggccacgg tccttgtccc
     2521 gacgccacag gtcgcggacg acctcggcca ccttgatgac gtcgccggag gcgagcttct
     2581 cgaggttggc cttgtagcga cgcgaccagt tggtcggctc ctcggtgtgg ggggcgcgca
     2641 ggaccgagaa gaccttgtcg agcccctctt gaccgacgac gtcacggacc ccgatgtcct
     2701 cgcagttctc cgcgggaacc tcgatggtca ggtcgccctg ggccaccttg agcttgaggt
     2761 agatcttctc ctcgcccttg atcgtgcggg tgttgatttc ttcgatcagt gcagccccg
//
LOCUS       DASYFY010000429         2344 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1291952, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000429 DASYFY010000000
VERSION     DASYFY010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1291952"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1325
                     /locus_tag="VGN19_08575"
     CDS             <1..1325
                     /locus_tag="VGN19_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020076857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEV7195980.1"
                     /translation="KMGWIAQFLSRAVVTGFLFGAAIDVVIGELPKLTGTKTEGSNSF
                     QELWSWLGSLDATHTATVVVGGISLIVVFGLRRIAPRVPGALVLVVGGLLASYLFDLG
                     EHGVALVGEVPRGLPSFQVPDLGLMWDHAGTAAVAAVALLLIGFSQTAGDARTFASRH
                     QYQIDVNQESVAQAATNIGAGLFQGMPVSTSLSASSLNDRSGARTGIASMMSGVTVLL
                     TLIVLAPLFSQLPKPVLGALIIEAVVMGMMNVPELRRIYRVQRFDFAVACAAILATLV
                     VGVLAGVMIGIGLSLLWLVAVTTRPRLPSLARESGTQVFRDAADHPEDELTPGVVVLR
                     LDGGLFFATADALDDRVRELIQATPDVSGLVLDCEGINFVDSQGSAQLDAILVLCQQA
                     GVTLRLARLKPSARAVLEREQTIDRLGRDHIHGSVYRAVQAQVGTPER"
     gene            1448..1855
                     /locus_tag="VGN19_08580"
     CDS             1448..1855
                     /locus_tag="VGN19_08580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195981.1"
                     /translation="MATENIYTGGAKNAWAGGLTVFGGVGLATVGGFQLLMGLSAVLK
                     DTVYVHTDKYVYKLDLVGWGWIHLILGVVAIVVGLTILVGAKWALTAGIVIAVLSALS
                     NFAFIPQAPWWALLIIAIDIVLIWSFSVVLRWP"
     gene            complement(1842..>2344)
                     /locus_tag="VGN19_08585"
     CDS             complement(1842..>2344)
                     /locus_tag="VGN19_08585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195982.1"
                     /translation="WVLAAVVLGLLVAIPLIVRARRRGAWTAELTAAEAEVAWFARIL
                     APQLRQAGSLDEVAGGWAVAAERVTGVEDRLTALEASAPDETGRLRALSLRDAVRTAR
                     ARVVDLLAGAATAPETGTATTEAGPTGVADVPGAIASAMDEVAAGLEAALQAPAQTGW
                     SETTAT"
BASE COUNT          305 a          844 c          806 g          389 t
ORIGIN      
        1 tcaagatggg ctggatcgcg cagttcctgt cccgcgcggt cgtgacgggg ttccttttcg
       61 gcgcggccat cgacgtcgtg atcggcgagc ttcccaagct cacgggcacc aagaccgagg
      121 gctcgaactc gttccaggag ctgtggtcct ggctgggctc gctcgatgcg acccacacgg
      181 ccacggtggt cgtcggagga atctcgctga tcgtggtgtt cggcctccgt cggatcgctc
      241 cccgggtgcc cggcgctctg gtcctggtcg tcggagggct gctcgcctcc tatctgttcg
      301 acctcggcga gcacggggtg gcgctcgtcg gcgaggtgcc gcgtgggctg ccctcgttcc
      361 aggtgcccga cctcggtctg atgtgggacc acgcaggcac tgcggcggtg gccgccgtgg
      421 cgttgctgct catcggcttc tcccagaccg ccggtgacgc tcggaccttc gcctcgcggc
      481 accagtacca gatcgacgtc aaccaggagt ccgtcgccca ggctgccacg aacatcggcg
      541 ccgggctgtt ccagggcatg cccgtctcga ccagcctgtc cgccagctcg ctgaacgacc
      601 gctccggggc gcggaccggg atcgcctcga tgatgtcggg cgtcacggtc ctgctgacgc
      661 tcatcgtgct ggccccgctg ttctcccagc tgcccaagcc ggtgctcggc gcgctgatca
      721 tcgaggcagt ggtcatgggc atgatgaacg tgcccgagct gcgccggatc tatcgcgtgc
      781 agcgattcga cttcgccgtg gcgtgtgcag cgatcctggc tacgctcgtc gtcggggtcc
      841 tcgcgggcgt catgatcggc atcggcctgt ccctgctgtg gctcgtcgca gtcaccaccc
      901 gaccccggct gccctccctg gcccgtgagt ccggcacaca ggtcttccgc gacgccgccg
      961 accaccccga ggacgagctg acgcccgggg tcgtggtcct gcggctcgac ggcggcctgt
     1021 tcttcgccac ggccgatgcg ctggacgacc gggtccgcga gctgatccag gcgacgccgg
     1081 acgtctcggg cctggtcctc gactgcgagg gcatcaactt cgtcgactcc caggggtcgg
     1141 cacagctgga cgccatcctg gtcctctgcc agcaggccgg cgtcacgctg cgactcgctc
     1201 ggctgaagcc gtcggcgcga gccgtgctcg agcgcgagca gacgatcgac cgtctcggcc
     1261 gcgaccacat ccacggcagc gtctaccggg ccgtccaggc acaggtgggc acccccgaga
     1321 ggtgaggcgt tcggtcgtct gactcctcgc aagccacccg aacagggtgg tgcggcccac
     1381 ctccgggcgt gccaccgtgg gacacgcgga cggcgtctga cgtccacatc atcgagagga
     1441 ggcggccatg gccacggaga acatctacac gggcggggcc aagaacgcct gggcaggtgg
     1501 gctgaccgtc ttcggaggtg tgggcctcgc gaccgtcggc gggttccagc tcctgatggg
     1561 cctgtccgcc gtgctcaagg acaccgtcta cgtccacacg gacaagtacg tctacaagct
     1621 cgaccttgtc gggtggggat ggatccacct gatcctggga gtcgtcgcga tcgtcgtggg
     1681 cctgacgatc ctggtgggcg ccaagtgggc gctgaccgct ggcatcgtca tcgcagtgct
     1741 gtcggcgctg tcgaacttcg ccttcatccc gcaggccccg tggtgggcgc tcctgatcat
     1801 cgccatcgac atcgtgctga tctggtcgtt ctcggtggtc ctcaggtggc cgtagtctcc
     1861 gaccatcccg tctgggccgg agcctgaagg gcggcctcca gccccgctgc gacctcgtcc
     1921 atcgccgacg cgatggcacc cggcacgtcg gcaacgcccg tcggccctgc ttcggtcgtg
     1981 gcggtcccgg tctccggggc cgttgccgcg ccggcgagca ggtccacgac ccgagcccgg
     2041 gcagtccgga cggcgtcgcg caggctcagc gcccggaggc ggcccgtctc gtccggcgcc
     2101 gaggcctcga gggccgtcaa ccggtcctcg acgccggtga cccgttccgc cgccacggcc
     2161 cagccaccgg cgacttcgtc gagggaaccc gcctggcgca gctgcggcgc cagaatgcgt
     2221 gcgaaccagg ccacctccgc ctcggccgcg gtgagctcgg ccgtccaggc gccgcggcgg
     2281 cgagcgcgca cgatcagggg tatcgccacg agcaggccga ggacgacggc cgccaggacc
     2341 cacc
//
LOCUS       DASYFY010000430         6181 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_345021, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000430 DASYFY010000000
VERSION     DASYFY010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345021"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(356..1369)
                     /gene="adhP"
                     /locus_tag="VGN19_08590"
     CDS             complement(356..1369)
                     /gene="adhP"
                     /locus_tag="VGN19_08590"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011186909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HEV7195983.1"
                     /translation="MKAAVVHDFTKSLSIDETPKPAPGPGEVLVKVETAGLCHTDIHA
                     AHGDWPVKPTPPFIPGHEGVGIVEQVGPGVTTPQVGDRVAMPWLGKACGTCEFCVDGW
                     ETLCEAQVNTGYGIDGSYAEYATANAAYVAQVPPSLDPLDAAVLTCAGVTTYKAVKLS
                     GARPGSLVAVFGIGGLGHLAVQYAKISGATVVAVDINDEKLELAKELGADHVVNALTE
                     DPVEAIQALGGAHAAISVAVAPKAFEQAFESLRRGGTLVFVALPADNQVSLPIFETVL
                     KGITIRGSIVGTRKDLAEVYAIHAQGRTRVIRETRKLEEVNECFEEVEKGNVKARIVF
                     DLR"
     gene            complement(1507..2697)
                     /locus_tag="VGN19_08595"
     CDS             complement(1507..2697)
                     /locus_tag="VGN19_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEV7195984.1"
                     /translation="MRALVAESWRRSAAAGVEADTASAPITLPSDALRDYREAHPLAQ
                     VFPILDEVLGRAARECDAIMAVSDATGQLLWVSGHPAVLRRAESIGFVEGSNWDERIA
                     GTSAPGMALNLDQPVSVSRSEHFRRSVQRWSCAATPIHDPTTGALLGVLDITGGDDIV
                     VPQTMAMVRAAARMAEAELAIHLLTHRGAETQRTTSGLSISLQALGRHESLLTIDDGR
                     TRRSTLRLTPRHSEMLLLLASAPRGLSGDELAVLLYEDDNGASTLRAALNKLRSLLGD
                     DLLASRPYRLVAEVTGDWLAVEAHLAAGDVVAATQAYRGPLLPRSVAPGVVRLRTDVE
                     LSLRQAVLEHGVPDLMSSWTRSSWGADDYEMWLAQRAAVSPTSPLLPLISGQIARLDR
                     EFGS"
     gene            complement(2927..4213)
                     /locus_tag="VGN19_08600"
     CDS             complement(2927..4213)
                     /locus_tag="VGN19_08600"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7195985.1"
                     /translation="MTPPARTVVTPAVAIVGAGPAGLSAATSLARTHSGEVLVLEREH
                     EAGGIPRHSDHTGYGLRDQHRLLTGPAYARLLTRQAQAAGARILTQATVTGWSGLDTT
                     PALQVTTPAGLLRVEPQAIILATGARERPRAARRIAGDRPGGVLTTGQLQNLVHLHHQ
                     SVGTRAVVVGSELVSWSAVMTLREAGCKTVLMTTEYAHDEAYLAFAVAGRLRLGVKAT
                     TRTRVARIIGRRRVEGVEIENLDTGDRTIVPCDTVVFTGDWIPDHELARLAALDIDPG
                     TKGPSIDTALRTSRPGVFAVGNLVHPVDTADVAALDGGHVATHVVRYLTGTERTGHLR
                     ENPTAGALIRADEPFTWVAPNRLAPDAIAPARGRLLLWPTERVHRPVVEIRQGDATIA
                     RRRVPWPAAPGRVFRVPWSVLSDADPRGGEIHIGLV"
     gene            complement(4210..5637)
                     /locus_tag="VGN19_08605"
     CDS             complement(4210..5637)
                     /locus_tag="VGN19_08605"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7195986.1"
                     /translation="MSSADAVNQVYDVVVIGGGIVGSAIARDLAGHEIAVALVEARDD
                     VGEGTSKANTAILHTGFDATPGTLESRLVARGYELLSAYSMETGIPVEHTGALLVAWD
                     AEQLAALPGLQTKARNNGYTRCEIVGASEVYAQVPTLGSGARGGLTVPDESIICTWTT
                     NLALATDAAARGTRVMLNRAVTSVVREHQVTTLHTTGGPVRGRWVVNAAGLGADYIDG
                     MFGYARFSVTPRRGELLVFDKLARPLVNTIVLPVPTSRGKGVLVSPTIYGNVMLGPTS
                     EDLQDRTATGTSEDGLAFLLSKGKQLMPALMEEEVTATYAGLRAASEHADYLVEADPG
                     QGYLLVGGIRSTGLTSGMAIAEHVRGLLAGAGLELPPRQDLPDPPRMPNLGEAFTRPY
                     EDADRIAADPAYGQVVCFCERVTEGEIRDACSSRLPPHSLEGLRRRTRVMNGRCQGFY
                     CGARVAQLASAGGIETAAAGTVEAS"
     gene            complement(5634..>6181)
                     /locus_tag="VGN19_08610"
     CDS             complement(5634..>6181)
                     /locus_tag="VGN19_08610"
                     /inference="COORDINATES: protein motif:HMM:NF014801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEV7195987.1"
                     /translation="EDAGLIAGPADLDRLSAQNAGGVTCVPAFAGLGAPFWRPEATAS
                     FTGLTLATHREHLVISVLEGLAAQIAELVDSTARDLGQRLTRLRVDGGLTKSMRLMQV
                     LADVAQVCVEVYPTSDATPLGAAALARMALDPTLGADEAIGPWQPSAIFEPAWSQDQA
                     GTFRAGWNQALNATLADQGKA"
BASE COUNT          971 a         2093 c         2122 g          995 t
ORIGIN      
        1 tccgcgaatt gctacggatc agaaggttgg gggttcgaat ccctccgggc gcactctgcg
       61 ttgagacaga cgaccagggc cctggcctgc ggcaacgcgg tcggggccct gctcgttcct
      121 gaggatgcgg acatgccgca ggcgtccctc agccctcgtt gcatccttcg atcgccttca
      181 tccgagcccc gagaccgcgg gcaggctggt gcgatgaccc agacgctgcc cgctgctgtt
      241 ggatctcgcc gtcggggagc ggaacgcaac gccagcgccg ccctgcggcg tgggaggtcc
      301 tagtcccgga ttcacccgac gccctcaccc tggtggacga ggctgacggc gcctatcagc
      361 gaaggtcgaa gacgatgcgg gccttgacgt tgcccttctc gacctcttcg aagcactcgt
      421 tgacctcctc gagcttccgg gtctcccgga tgacgcgggt gcggccctgg gcgtggatcg
      481 cgtacacctc ggcgaggtcc ttgcgggtcc ccacgatgga tccgcggatg gtgatgccct
      541 tcaagacagt ctcaaagatc ggcaggctca cctgattgtc ggcaggcagg gcaacgaaca
      601 ccagcgtgcc gccgcggcgc agcgactcga aggcctgctc gaacgccttg ggcgccacgg
      661 ccacggagat cgcggcgtgc gctccgccca gggcctggat ggcctcgacc gggtcctcgg
      721 tcagggcgtt gacgacgtgg tcggcgccga gctccttggc gagctcgagc ttctcgtcgt
      781 tgatgtcgac agcgaccaca gtggcgccgc tgatcttcgc gtactgcacc gcgaggtggc
      841 caagcccgcc gatgccgaac accgccacga gggagcccgg ccgcgccccg gagagcttga
      901 ccgccttgta cgtcgtgact ccggcgcagg tgagcactgc cgcgtccagg ggatccagcg
      961 acggcggcac ctgtgcgacg taggcggcgt tcgccgttgc gtactcggca taggaaccgt
     1021 caatgccgta gccggtgttg acctgcgcct cacacagcgt ctcccacccg tcgacgcaga
     1081 actcgcaggt cccgcacgcc ttaccgagcc acggcatggc gacccggtca cccacctggg
     1141 gtgtggtgac ccccggtccg acctgctcga cgatcccgac cccctcgtga ccggggatga
     1201 acggcggagt gggcttgacc ggccagtcac cgtgggccgc gtggatgtcg gtatggcaca
     1261 ggccggcggt ctcgaccttg accagaacct cgccaggccc gggcgcgggc ttcggcgtct
     1321 cgtcgatact gagcgacttg gtgaaatcgt ggacgacagc tgccttcatg ggtttctcct
     1381 tgtgaggatg gactgaccgt gccgctgaca cgcgggttca ttgcgcggag gggggtcaga
     1441 tgtgcatcac acgctaggga cgcaaggttg ctttgccgtt tgcgttgccc gagcccagtt
     1501 cctgggctag gagccgaact ccctgtccag ccttgcgatc tgaccggaga ttaggggcag
     1561 caacggcgag gtcgggctca cggcagcacg ctgggcgagc cacatctcgt agtcgtcggc
     1621 gccccaggac gagcgcgtcc acgacgacat caggtcgggg accccgtgct ccaggactgc
     1681 ctgccgcagc gacagctcca cgtcggtgcg cagccggaca acgcccggag ccaccgagcg
     1741 tgggagcagc ggcccccgat acgcctgcgt ggcggcaacg acgtcgcccg cagcgagatg
     1801 tgcctcgacc gccagccagt ctccagttac ctccgcgacc agccgataag gtcgtgacgc
     1861 caacaagtcg tcacccaaga gagaacgaag cttgttcagg gccgcccgca gggtcgaggc
     1921 gccgttgtcg tcctcgtaca ggaggaccgc cagctcgtcc ccagacaggc cacgaggcgc
     1981 cgacgccagc aacagcagca tctcgctgtg ccggggagtg aggcgcaagg tggaccgacg
     2041 ggttcgccca tcatcgatgg tcagcaacga ctcatgacgc cctaacgctt gcagcgagat
     2101 cgacagccca ctggtcgtcc gctgcgtctc cgcgccccgg tgagtcagca ggtggatggc
     2161 cagttccgcc tccgccatcc tcgcggcggc ccgcaccatc gccatggtct gaggtacgac
     2221 gatgtcgtcg ccacccgtga tgtcaaggac ccccagcagg gcgccggtcg tcgggtcgtg
     2281 gatcggtgtg gctgcacagc tccacctctg caccgatcga cggaagtgct ccgagcgact
     2341 cacactcact ggctggtcga ggttgagggc catgccaggc gcgctggtac cggcaatcct
     2401 ctcgtcccag ttggaccctt cgacgaagcc gatcgactca gcgcggcgta gcaccgccgg
     2461 gtgcccgctg acccacaaca gctgaccggt tgcgtcagac acggccatga tcgcgtcaca
     2521 ttcccgcgcg gcccgaccga ggacctcgtc caggatcggg aagacctgcg ccagcggatg
     2581 ggcttcgcgg tagtcgcgca acgcgtcact cggaagcgtg atgggcgcac tcgcagtgtc
     2641 ggcctccacg ccagcagcgg ccgagcggcg ccacgactcc gcaactaggg cacgcatcac
     2701 cttgaaggtc acccttcagt acacagcgag agccctgaac ccgccagccc tgagaccagg
     2761 gcaacaagcc ggccaccatg ccgataaccg cctcggtgct ccgcgtcctg gaggcctacc
     2821 gaggccagcc cgacgacatc ggggcccctg aatggctacg gatcagaagg ctaggggctt
     2881 gaatcccttc gggcgcactc tgtttaccga gttctgtcat tcagccttag acgagcccga
     2941 tgtgtatctc acctccacga gggtctgcat cggacagcac tgaccagggg acgcggaaga
     3001 cgcgccctgg cgccgccggc caaggcacgc ggcgacgggc gatcgtggcg tcgccctgtc
     3061 gaatctcgac gacgggacgg tgcacacgct cggtcggcca gaggagcagg cgcccacgcg
     3121 caggtgcgat ggcatccggg gcaaggcggt tcggggcgac ccaggtgaat ggctcgtccg
     3181 ctcggatcag cgccccggcc gttgggttct cgcgcaggtg cccggtcctt tccgtcccgg
     3241 tcaggtagcg aacgacgtgg gtggcgacgt gcccgccgtc cagtgccgcc acatcggcgg
     3301 tgtcgacggg gtgcaccagg ttgcccacgg cgaaaactcc tgggcggctg gtgcgcagag
     3361 ccgtgtcgat gctcgggccc ttggtaccgg ggtcgatgtc gagggctgcg agacgcgcga
     3421 gctcgtggtc gggtatccag tcgcccgtaa agaccacggt gtcgcagggg acgatggtgc
     3481 ggtcgcctgt gtcgaggttc tcgatctcca ctccttcgac gcggcgacgg ccgatgatgc
     3541 gcgccacccg cgtgcgcgtc gtcgccttca cgccgagtct gagtcgcccg gcgaccgcga
     3601 aggcgaggta ggcctcgtcg tgggcgtact cggtagtcat caggacggtc ttgcagcccg
     3661 cctcgcgcag ggtcatcacc gccgaccagc tcaccagctc gctgcccacg acgacggcac
     3721 gggtcccgac tgattggtgg tggaggtgga cgagattctg aagctggccg gtggtgagga
     3781 ctccgcccgg ccggtcgccg gcgatcctgc gcgcggcgcg ggggcgctcg cgagctccgg
     3841 tcgccaggat gatcgcctga ggctcgacgc gcaggagtcc agcgggcgtg gtcacctgga
     3901 gagcgggtgt ggtgtccaac cccgaccatc cggtgacggt tgcctgggtc agtatccggg
     3961 caccggccgc ctgggcttgg cgggtcagga gccgggcgta cgccgggccc gtcaggagcc
     4021 tgtgctggtc gcgcagcccg tagcccgtgt ggtcgctatg tcgcgggatt cctccagcct
     4081 cgtgttcgcg ctccaggacg agcacctcgc ctgagtgagt gcgtgccagt gacgtcgcag
     4141 cactcaagcc tgctgggccc gccccgacga tggcgacggc cggtgtcact acggtgcgcg
     4201 cggggggagt cacgatgcct cgaccgtccc ggcggccgca gtctcgatgc cgcccgcgga
     4261 ggccagctga gcgactcgcg cgccacagta gaagccctgg cagcgaccgt tcatcactcg
     4321 cgttcgccgt cgtagccctt cgagactgtg cggcggcagc cgcgacgagc atgcatcgcg
     4381 gatctcgcct tcagtaacgc gctcgcagaa gcagaccacc tgtccgtacg cgggatcggc
     4441 cgctatccga tccgcatctt cgtatggtcg ggtgaatgct tcgccaaggt tgggcatgcg
     4501 cggaggatct ggaaggtctt ggcgtggcgg aagttccagt ccagccccgg caagcagccc
     4561 gcggacatgt tcggcgatgg ccatgcccga ggtgaggccg gtcgagcgga ttccgccgac
     4621 gagtaggtag ccctgacccg gatcggcctc gaccaggtag tccgcatgct cgctggcggc
     4681 gcgaagcccg gcatacgtcg cagtgacctc ctcctccatc agcgcaggca tgagctgctt
     4741 gcccttggag aggagaaagg cgaggccgtc ctcagacgtt ccggtggccg tgcggtcctg
     4801 aaggtcctca gatgtcggac cgagcatgac gtttccgtag atcgtggggc tgacgagaac
     4861 gcctttgccg cgcgaggtcg gcaccgggag cacgatcgtg ttgacgaggg ggcgcgcgag
     4921 cttgtcgaag acaaggagct cgccgcggcg gggcgtgacg ctgaatcggg cgtagccgaa
     4981 catgccatcg atgtagtccg cgccaaggcc tgcagcgttg acgacccagc gcccgcggac
     5041 cgggccgccc gtggtgtgca gcgtggtcac ctggtgctcg cggacgaccg aggtgacagc
     5101 gcggttgagc atgactcgtg ttccacgagc tgccgcgtcc gtggccaggg cgagattggt
     5161 cgtccaggtg cagatgatgg attcgtcggg gaccgtcagg ccgccgcgtg cgccagaccc
     5221 gagcgtaggc acctgcgcgt acacctcgct agcccccacg atctcgcatc tggtgtagcc
     5281 gttgttgcgg gccttggtct gcaggccggg cagcgcggcc agctgctcgg cgtcccaggc
     5341 caccagcagg gcgccggtgt gctcgaccgg gatcccggtc tccatcgagt aggccgagag
     5401 cagctcatag ccgcgcgcca ccagccgtga ctcgagagtg cctggcgtcg cgtcgaaccc
     5461 cgtgtgcagg atggcggtgt tcgccttgct ggtcccttct cccacatcgt ccctggcttc
     5521 gacgagggcg acggcgatct cgtgcccggc aaggtcgcgg gcgatcgccg acccgacgat
     5581 gcctccgcca atgaccacca cgtcgtagac ctggttcacg gcgtcagcgc tgctcacgct
     5641 ttcccctggt cggcgagggt ggcgttgagg gcctggttcc agcccgcgcg gaaggtgcca
     5701 gcctggtcct ggctccaggc cggctcgaat atcgcactcg gctgccacgg gccgatcgcc
     5761 tcgtccgcac caagagtggg gtcaagggcc atgcgggcca gggcggcggc tcccagcggc
     5821 gttgcgtcgg aggtcggata cacctcgacg cacacctggg cgacgtcggc aaggacttgc
     5881 atgagccgca ttgacttggt cagccccccg tctactcgca accgggtcag ccgctgaccg
     5941 aggtcccgtg ctgtcgagtc gacgagctcc gcgatctgag cggccaaacc ctccagaacg
     6001 gagatcacga ggtgctcgcg gtgggtcgcc aaggtcagcc cggtaaagct cgccgttgcc
     6061 tcgggccgcc agaagggagc ccccagcccg gcgaaggcag gtacgcaggt cacgcccccg
     6121 gcattctgcg cgctcaagcg gtcaaggtcc gctgggccgg cgatgagccc tgcgtcttcc
     6181 a
//
LOCUS       DASYFY010000431         1840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1029122, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000431 DASYFY010000000
VERSION     DASYFY010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029122"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            193..>1840
                     /locus_tag="VGN19_08615"
     CDS             193..>1840
                     /locus_tag="VGN19_08615"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7195988.1"
                     /translation="MGFSRDSIGRTGAVVAIGLVGVLALAACSSSSRATSNRGTTAQH
                     AGTGASFDPSVMNRPQHIGTPVAGGSLTFGLEAAVSTLVPGRIVQPSDLTVAASVYDP
                     IVGFDDHGLYAPTGLAASWTKTPDLKQWTFTLRPNVTFSDGTPANAAAVVTQLAALKK
                     LPHCSCAADVAHVLNVEAVDDLTVRFTLDQANVAFPQFLASGAGYLAAPAAWASPDTM
                     TAHPIGTGAFRSITDGELSYTRNSTYWRKSASGHALPYLDKITFVAIPDSTARLSELH
                     SGNVDILQSADTQNLVQAKRDPNLVVQPVTGSSATTVVLNSHEPPFDDIRMRQAFNYA
                     LDREALNKAYFGDSRTPAYGPLEPSNPYYDPKGQLPGHDLAKAKALVTQVKNDGKSTT
                     VTALCINTPQASSQFATIANEERAAGISATLKTVDQVSLVVALQSKSANGFEAACFRN
                     VQIADPDVLYSTYYRTGGNNISLTSDLALDVALRQGRRSTDVNARKAAYNTAQELLAE
                     DITTVPLLFDLYGNIHTKQVSGLSAPRPNALGLIEPGDLYF"
BASE COUNT          311 a          713 c          561 g          255 t
ORIGIN      
        1 gccgcaccgt aggccgcccg cacggcggcc gggtcgaagg gttccacgac cagcagtctg
       61 ctgcccccgg atcaggacct ccacaggatt cccgcggtgc catcgtgttc gcacacttgg
      121 tgctcaaggt tgccggtatt gcaccgacaa ccatcgggca gcattggaaa ccaccacctc
      181 tggagggatc tcgtgggatt cagtcgggac tcgatcgggc gcacgggcgc cgtcgtggcc
      241 atcggcctgg tgggcgtgct cgcgctcgct gcctgcagct cctcctcacg ggcgacgtcc
      301 aaccgtggca ccaccgccca acacgccggg accggtgcct cgttcgaccc ctcggtgatg
      361 aaccgaccgc agcacatcgg cacgccggtc gcaggcggct cgctgacgtt cggcctcgag
      421 gccgcggtct cgaccctcgt cccgggccgg atcgtgcagc cctcggacct gacggtggcc
      481 gcctcggtct acgaccccat cgtcggcttc gacgaccacg gtctctacgc cccgaccggg
      541 ctcgccgcca gctggacgaa gacgccggac ctcaagcagt ggaccttcac gctccgcccg
      601 aacgtcacct tcagcgacgg caccccggcg aacgccgccg cggtcgtgac gcagctggcc
      661 gccttgaaga agctgcccca ctgcagctgc gccgccgacg tggcgcacgt gttgaacgtc
      721 gaggcggtcg acgacctcac ggtgcggttc accctcgacc aggcgaacgt ggcgttcccc
      781 cagttcctgg cgagcggagc ggggtacctc gccgctcccg cggcctgggc ctcgcctgac
      841 acgatgacgg cccaccccat cggcaccggc gccttccggt cgatcaccga cggcgagctc
      901 tcctacacgc ggaactcgac gtactggcgc aagagcgcct cgggccacgc gttgccctac
      961 ctcgacaaga tcacgttcgt ggcgatcccc gactcgaccg cccgcctcag cgagctgcac
     1021 agcggcaacg tcgacatcct ccagagcgcc gacacccaga acctggtgca ggccaagcgg
     1081 gacccgaacc tggtggtgca gcccgtcacc ggcagcagcg cgaccaccgt ggtcctcaac
     1141 tcccacgagc ccccgttcga cgacatccgg atgcgccagg cgttcaacta cgccctcgac
     1201 cgtgaggccc tcaacaaggc ctacttcggg gactcccgga ctccggcgta cggcccgctc
     1261 gagccctcga acccctacta cgacccgaag ggccagctgc ccggccacga cctcgccaag
     1321 gcgaaggcgc tcgtcaccca ggtgaagaac gacggcaagt cgacgaccgt cacggccctg
     1381 tgcatcaaca cgccccaggc gtcgagccag ttcgcgacca tcgccaacga ggagcgggcc
     1441 gcgggcatct ccgccaccct gaagacggtc gaccaggtga gcctggtggt ggcgctccag
     1501 agcaagagcg cgaacggctt cgaggcggcc tgcttccgca acgtccagat cgccgacccc
     1561 gacgtcctct actcgaccta ctaccggacc ggtggcaaca acatctcgct gacgagcgac
     1621 ctcgcgctcg acgtggcgct gcgccagggc cgccggtcga ccgacgtgaa cgcccgcaag
     1681 gcggcctaca acaccgccca ggagctgctt gccgaggaca tcacgacggt gccgctgctg
     1741 ttcgacctct acggcaacat ccacaccaag caggtgagcg ggctgtcggc cccccgcccg
     1801 aacgcgctgg gcctcatcga gcccggtgac ctctacttcg
//
LOCUS       DASYFY010000432         2867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_766159, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000432 DASYFY010000000
VERSION     DASYFY010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2867
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766159"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..1298)
                     /locus_tag="VGN19_08620"
     CDS             complement(75..1298)
                     /locus_tag="VGN19_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7195989.1"
                     /translation="MSSPASSAYPGVTLAPVTTANASFDLFKISEDHEALREAVRAVA
                     EDKIAPFAAAVDEDARYPQEAHDALVASDFFAPHVPEEFGGVGADALATCIVIEEIAR
                     VDASASLIPAVNKLGSMPLILAANDDVKRRYLTPLAEGRTTFSYGLSEREAGSDTAAM
                     KTRARYDPADGGSWVLNGQKSWITNAGVSEFYTVLAVTDPDGRRGNNVTAFVVEKSDA
                     GFTFGAKERKLGIKGSPTRELHFDNVRIPADRVVGEVGDGLKIALRTLDHTRVTIGAQ
                     AVGIAQGALDFAIGYVKERSQFGKAVAEFQGVQFMLADMAIAVEAARQVVYAAAAKSE
                     RGDKDLPFFGAAAKCYASDVAMQVTTDAVQLLGGAGYVRDFPVERMMRDAKITQIYEG
                     TNQIQRVVIARQLLK"
     gene            1435..>2867
                     /locus_tag="VGN19_08625"
     CDS             1435..>2867
                     /locus_tag="VGN19_08625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7195990.1"
                     /translation="MTTFFHSRRRITITATVALGVALGAGTTAEAASPANNGAVNLKT
                     RAVNAMIASAAKHTLGHGAAGQLAVSATAAAVPKRAGRLDRRPAAAIPGVTRMTSMRA
                     ASPLAAMTTMTPTTGAPSATAPGSRSTLTVTSPTCTDLKPDVTPTNDRVWVHWADIGL
                     PSYTVLRKRDSGAWTQVHVAQAGETSFLDLGVNPRSVFIYRITGNGLSCDFPTSPFSV
                     SMSTGDDWGVPDAAWGAAGSTQGSGPLAMQDPSSLAMPSTQTGMDPAFSPDGRRVAVA
                     NSTDGVSWTMDILRVSAQSGDPRILRVTIPSGWVGAEPAWSRDGRTLVYTRVQVDPTT
                     HNATGSQLWRLDTQTGVTQLVPGSEGLLQADWRSASTFVAAGFAPGSGLYTLPTAGGS
                     ATAVANTANAGDPRVGPDGRIWFVTGDGTTFSVKEVSPTAGNPVTTYQSSTTHTYERP
                     RISPDGTLFVVDTIHDPTSPNNNTFTVT"
BASE COUNT          460 a         1023 c          948 g          436 t
ORIGIN      
        1 acgccatccg catgcgccat tcctagcacg cctgcaccgg cggggcggcc tcgctgctcc
       61 accgtgtcca cgggctattt caggagttga cgggcgatca cgacgcgctg gatctggttg
      121 gtgccctcgt agatctgggt gatcttggcg tcgcgcatca tccgctccac cgggaagtcg
      181 cggacgtacc ccgccccgcc aagcagctgg acggcatccg tggtcacctg catggcaacg
      241 tcggaggcgt aacacttcgc ggccgcgccg aagaacggga ggtccttgtc gccgcgctcg
      301 gacttggcgg cagcggcata caccacctga cgggcggcct cgaccgcaat ggccatgtcg
      361 gcgagcatga actggacacc ctggaactca gcgacagcct tgccgaactg cgagcgctcc
      421 ttgacgtagc cgatcgcgaa gtcgagggca ccctgggcga tgccgacggc ctgggcgccg
      481 atcgtcacgc gggtgtggtc cagcgttcgc agggcgatct tgagaccgtc gccgacctcg
      541 ccgacgaccc ggtcggccgg gatgcgcacg ttgtcgaagt gcagctcgcg ggtcgggctg
      601 cccttgatgc cgagcttgcg ctccttggca ccgaaggtga agcccgcatc ggacttctcc
      661 accacgaagg cggtgacgtt gttgccgcga cgcccgtcag ggtctgtcac ggcaagcacg
      721 gtgtagaact cagagacccc agcgttggtg atccaggact tctgaccgtt caagacccag
      781 ctgcccccgt cggccgggtc atagcgcgcg cgagtcttca tggccgcggt gtcggatccg
      841 gcctcgcgtt cggacagtcc ataggagaag gtcgtccgcc cctcggcgag cggggtgagg
      901 taacggcgct tgacgtcgtc gttcgccgcg aggatcaggg gcatcgagcc gagcttgttg
      961 accgcgggga tcagcgaggc cgacgcgtcg acccgcgcga tctcctcgat gacgatgcag
     1021 gtcgccagcg cgtcggcccc caccccaccg aactcctcgg gcacgtgcgg tgcgaagaag
     1081 tccgacgcga ccaaagcatc atgcgcctct tgggggtagc gggcgtcctc gtcgaccgcg
     1141 gccgcgaagg gcgcgatctt gtcctcggcc acggcgcgga ccgcctcgcg tagggcctcg
     1201 tggtcctcgg agatcttgaa caggtcaaag gaggcgttcg cggtggtcac aggagccaag
     1261 gttacccccg ggtatgccga cgatgcggga ctgctcatgt ggtgccggac acgtcctgac
     1321 agggtcgaaa actggtgtgt cctcccggtt gcgccccatc tgcacctccc gagtggtaag
     1381 catctcccga ccatcggcga ctggcgccga cgaagcaggg ggttccacga ccagatgacc
     1441 acgttcttcc actcccgtag gcggatcacc atcaccgcca ccgtggccct gggcgtcgcc
     1501 ctcggcgcgg gtaccaccgc cgaggccgcg agcccggcca acaacggcgc tgtcaacctc
     1561 aagacgcgcg ccgtgaacgc catgatcgcc agcgccgcca agcacaccct gggccacggt
     1621 gccgccggac agctcgcagt gtccgccacc gcagcagctg tgccgaagcg tgcgggcagg
     1681 ttggaccgcc gaccggcggc ggccattccc ggcgtgacac gcatgacctc gatgcgggcg
     1741 gcgtcgccgc tggctgccat gacgacgatg acgccgacca cgggtgcgcc gtcggcgact
     1801 gctcccgggt cgcgctccac cctcacggtc acgtcaccga cgtgcaccga cctcaagcct
     1861 gacgtcacgc cgacgaacga ccgggtgtgg gtgcactggg ccgatatcgg cctccccagc
     1921 tacaccgtcc tgcggaagag ggattcaggg gcgtggacgc aggtccacgt ggcccaggcg
     1981 ggtgagacct cgttcctcga cctcggggtg aacccccgca gcgtgttcat ctaccggatt
     2041 accggcaacg gcctcagctg tgacttcccc acttcgccgt tcagcgtcag catgtccacg
     2101 ggagacgact ggggagtccc tgacgccgcc tggggcgcgg ccggctcgac gcagggctcc
     2161 ggtccgttgg cgatgcagga cccctcgtcc ctggcgatgc cgagcaccca gaccgggatg
     2221 gacccggcct tctcgcccga cgggcgtcga gttgccgtcg ccaacagcac ggacggcgtg
     2281 agctggacca tggacatcct gcgggtcagc gcccagagcg gcgacccgcg catcctgcgg
     2341 gtcacgatcc cctccggctg ggtcggggcg gagcccgcct ggtcgcgcga cgggcgcacg
     2401 ctcgtctaca cccgggtcca ggtcgacccc accacccaca acgccaccgg atcacagctg
     2461 tggcgcttgg acacgcagac cggagtcacc cagctggtcc ccggctcgga gggcctcctg
     2521 caagcggact ggcgatcggc gagtacgttc gtcgctgccg gtttcgcccc cgggtcgggc
     2581 ctgtacacgc tgccgaccgc cggtggctca gccacagcgg tggccaacac cgccaacgcc
     2641 ggcgaccctc gggtcggccc ggatggccgg atctggttcg tgaccggtga cggcacgacc
     2701 ttctcggtca aggaggtctc gccgacagcc gggaacccgg tcacgaccta ccagtcgagc
     2761 acgactcaca cctatgagcg cccgcggatc tcgcccgacg gcaccctgtt cgtcgtggac
     2821 acgatccatg accccacgag ccccaacaac aacacgttca cggtgac
//
LOCUS       DASYFY010000433         9709 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_923249, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000433 DASYFY010000000
VERSION     DASYFY010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9709
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_923249"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VGN19_08630"
     CDS             complement(<1..445)
                     /locus_tag="VGN19_08630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7195991.1"
                     /translation="MTRRRNVLVAAAVALTMGVAGCSSQSGPGTNQASSPQSGTPQSR
                     VARTPPPGAAALARFYGQTLAWRGCGNAQCAGLSVPLDYAQPAGATITVQVLRMTATR
                     PSERIGSLVVNPGGPGGSGVDYARAADQIVGAPVRQRFDIVGLDPR"
     gene            complement(480..1619)
                     /locus_tag="VGN19_08635"
     CDS             complement(480..1619)
                     /locus_tag="VGN19_08635"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEV7195992.1"
                     /translation="MSVWRDVIGQDAAVATLQRAVDEVSAMTHAWLLTGPPGSGRSVA
                     ARAFAGALECPNHGCGDCRECRTAVDGTHADVDVIATEGLSIKVEQARELAAMSALRP
                     SVGPWRVIIIEDADRLTERAADALLKAIEEPVARTVWVLCAPSLEDVVITIRSRSRHV
                     RLRTPPVEAVAELLHRRDGVELPMALYAARAAQSHVGLARRLARDESARIRRRDVVGL
                     AVRIRGVGDAVGAAADLASIAEEESTAAAAERDGAERQRLLEVLGADPAARTQPPHIR
                     SQLTGLERDQKARATRHSRDVLDRSLVDLLSVYRDALVLHSGAAVGLVNQDSLTLVQT
                     LARSMSPEQLLVAMDAIGTARERIGLNVAPLLALEAMAISLRPPR"
     gene            complement(1616..2233)
                     /gene="tmk"
                     /locus_tag="VGN19_08640"
     CDS             complement(1616..2233)
                     /gene="tmk"
                     /locus_tag="VGN19_08640"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEV7195993.1"
                     /translation="MTDGLFIAFEGGDGAGKSTQVELLREALEAAGRSVTVTRQPGGT
                     ELGRRIRDLVLHGDHVAPRAEALLFAADKAHHVEQLIAPSLAAGDVVLTDRYTDSSVA
                     YQGAGRGLGAQEIHDITMWAVGGLVPDLTVIVDVSAQEGRRRRGAVHDRLESEEDAFH
                     EAIRAHFLAMASGNPQRYLVVDGTQPAELVHRQVVERLVAMGVLR"
     gene            complement(2286..3071)
                     /locus_tag="VGN19_08645"
     CDS             complement(2286..3071)
                     /locus_tag="VGN19_08645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEV7195994.1"
                     /translation="MSAHERQTQAPVLTVGQVAERFGITVRSLHHYDEIGLLQPSGRS
                     LAGYRLYTETDLTRLQHVVVYRRLGFALEEIALLLDHPESAAEHLRRQRAAVTGRLEE
                     LTELVQAIDRALEREMNEQPASPEDLKELFGEGFHDAQAEAQERWGDTDAWRQSQRRT
                     KTYTAADWAQIKAESDAVQAAFVAAMDAGEPPTSVMAMEAAEQHRRSIDQRFYDCSYE
                     AHRGLADLYVSDPRFTATYDEIRTGLSEYVRAAIHANADRHSD"
     gene            complement(3105..4343)
                     /locus_tag="VGN19_08650"
     CDS             complement(3105..4343)
                     /locus_tag="VGN19_08650"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7195995.1"
                     /translation="MGNAQTDAADLRRLRDYPHAFRMAVANVIDGLGTYIGLAALIVV
                     GYHSSRLFGTAMVLAANVLPGLLVTLFVAPRLQHRQRRPVQLLLNLVGGVALLPAIVA
                     PSAVTAILAAAMLGAAGVATRGVQMAALAEAVPRSVRGKFFGMVGGFGQAVQVVGLAG
                     GGALAATFSPRVALAVDALSFGVAGLVIASIHFARVDPEGPTSTSGSIFGRAPRVVWS
                     IPLLRMLACVTWIGALVGTVPETASPAVTSTKLLPLVLAASPAGGALAALIGTRMGVF
                     GRVVDTLRLALVSAVSLVVVGAGMYVAFQHPIDSPARALYGVVANVLIGGLGVWFLGM
                     MAAFAEHTPESDTVTVGAFMSWSVGAASGLGGFVVALLGVAGGYAALGVLLVPASLWG
                     LRMVSRSPVSVSHGGIEDRG"
     gene            complement(4461..5141)
                     /locus_tag="VGN19_08655"
     CDS             complement(4461..5141)
                     /locus_tag="VGN19_08655"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7195996.1"
                     /translation="MVGSSGPVLVLAEGLCKRLGGVPVLRGVDLEVTQGSLHAVVGPR
                     GSGKTTVLNVLTGFLAPDSGSVWFAGVEVTGRLPKPGLVGGMARALRSPVLFDGVAAA
                     DYASFVAGHDAPARTCLGDRAEVGLGLLSPLERTALEIELALSLRPRLLVLDEPSAGL
                     GPGQLHALTDVVRRAAAGRTVLLVDHHPGLVRAVADQVTTLVGGRVVGESAYLSKADQ
                     ASVSIPAA"
     gene            complement(5187..7982)
                     /gene="topA"
                     /locus_tag="VGN19_08660"
     CDS             complement(5187..7982)
                     /gene="topA"
                     /locus_tag="VGN19_08660"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEV7195997.1"
                     /translation="MSTGRKLVIVESPAKAKTIGGYLGKDWDVEASVGHIRDIPTPSE
                     MPADIKKGPFGRFGVDVDRGFEAYYVVDADKKKKVSELKRLLKGADELYLATDEDREG
                     EAIAWHLLEVLQPKVPVKRMVFHEITKEAIQRAAATTRDLDTALVDAQETRRILDRLY
                     GYEVSPVLWRKVKAGLSAGRVQSVATRMVVERERERMAFVRAAYWDVEGDFTPDGAGN
                     QFQARLSAVDGARVATGRDFADDGTLKSNAVVHLDEATANSIATQVLSASVRVTSVQE
                     RPYTRRPSAPFTTSTLQQEASRKLRLSSKNAMRVAQRLYENGYITYMRTDSTTLSEAA
                     LTAARQQARDLYGAEYVPQSPRLYEKKVKNAQEAHEAIRPAGDRFRTPAQVAGQLRGD
                     EFALYELIWKRTVASQMADARGSTATVKLGGPLADGRVVEFSASGTVITFRGFLAAYE
                     EGRDVEEAARAGLQEEERRLPKLSEGVAITVVRAEADGHETTPPPRYTEATLVKAMEE
                     RGIGRPSTYASTVGTIQDRGYVVTRGSALIPTWLAFAVTRLLEEHFTELVDYDFTASM
                     EEDLDRIAGGDEQRAAWLHRFYFGSDLAGGSERAGQGLKHLVEDLGEIDAREISTIAI
                     GDGIVVRVGRYGPYVEETVPAGVDPATGEMTEGASETPRRATINDDIAPDEMTPARAR
                     ELLDASADDGKVLGQDPATGRDIVAKAGRYGPYVTEVLDEAAGDGAPAKTRGKAKVKP
                     RTASLFKDMDLATLDLPTALKLLSLPRVVGADEEGAEITAQNGRYGPYLKKGTDSRSL
                     ASEQQLFDITLEEALAIYSQPKQRGRAASAPLKELGDDPVSGKAMVVKDGRFGPYVTD
                     GETNATLRKDDDPESITAERGAELLAEKRAKGPTTRKRATKKTTKKTAAKKTTKATAT
                     ATKKVAKKVTKKAAKGV"
     gene            8141..8944
                     /locus_tag="VGN19_08665"
     CDS             8141..8944
                     /locus_tag="VGN19_08665"
                     /EC_number="1.13.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005271796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III extradiol ring-cleavage dioxygenase"
                     /protein_id="HEV7195998.1"
                     /translation="MTENATIARQPVLYLSHGAPPLADDPVWTEQLAGWSRDVGRPTS
                     ILMISAHWEEAPLALSATSGKVPLVYDFWGFPRRYYEVTYNAPGAPALADSVTTLLHS
                     TDTPVQRDETRGLDHGAYVPLVEMYPDADIPVLQMSMPTLDPQALFDLGRRLAPLRDE
                     GTLIVGSGFTTHNLRWFNPGAGADSPPPTPSAEFDHWAAEALERKDVDAILDFMNKAP
                     AAREAHPRTEHWAPLYVSLGAAYASGSLDNTSVIDGFWFGLSKRSWQFA"
     gene            8984..9385
                     /locus_tag="VGN19_08670"
     CDS             8984..9385
                     /locus_tag="VGN19_08670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7195999.1"
                     /translation="MITALHTLIYAEDPDAARAFFRDVLQFPGADTGGGWLIFGTGPS
                     ELALHPSSWEHEGQTGGTDQRFDLSLMCDDLEVTRKELEGRGAIFEGDVAEQRWGSTI
                     QLKIPGAGTMMLFQPKYDPPALRHPDLEPMW"
     gene            complement(9433..>9709)
                     /locus_tag="VGN19_08675"
     CDS             complement(9433..>9709)
                     /locus_tag="VGN19_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196000.1"
                     /translation="KTAGAFDIRNIIGALLGIYGVILVLAGFFGDTASAKTGGINANL
                     WTGLALVVASVVFLAWARLRPILVPEHVEPAEDDPTRPAPRRRAGTH"
BASE COUNT         1521 a         3457 c         3244 g         1487 t
ORIGIN      
        1 cgcgaggatc gaggcccacg atgtcgaagc gctggcgaac cggtgcgccg acgatctggt
       61 cggcggcacg ggcgtagtcc acaccggaac cacccggccc gccggggttc acgaccaggg
      121 acccgatccg ctcgctcggt cgcgtggccg tcatcctcag gacctgcacg gtgatggtcg
      181 caccggccgg ctgggcgtag tcgagcggca ctgacaggcc cgcgcactgc gcgttgccgc
      241 agccgcgcca cgcgagcgtc tgaccgtaga accgcgcgag ggcagcggca ccggggggtg
      301 gcgttcgggc caccctcgac tggggagtgc cggactgggg gctgctcgcc tggtttgttc
      361 ccgggccgga ctgcgacgag cagccagcca cccccatcgt cagtgcgacc gcagccgcca
      421 ccaggacatt tcgccgccgc gtcatggtct cgacggtatc tcgacgccct tcaagagctt
      481 catcgaggcg gtcgcaacga gatggccatg gcctccaacg ccagcaacgg ggccacgttg
      541 aggccgatcc gttcccgagc cgtcccgatc gcatccatcg cgaccagcag ctgctcaggg
      601 ctcatcgacc gcgccagcgt ctggaccagc gtgagactgt cctggttgac cagccccacc
      661 gccgctccgc tgtgcaggac aagggcgtcg cgatacacgg agagcaggtc cacgagggaa
      721 cggtccagca cgtcgcgcga gtgccgcgtg gcccgggcct tctggtcgcg ctcgaggccg
      781 gtcagctggc ttcggatgtg gggtggctgg gttcgggccg cgggatcggc gcccagcact
      841 tccaggagcc gttggcgttc ggcaccgtca cgttcggcgg cggctgcggt ggactcctcc
      901 tcggcaatcg acgcgaggtc ggccgccgcc cccaccgcat cgccgacccc tcggatgcgg
      961 acggcaagtc cgacgacgtc ccgacgacgg atccgggctg actcgtcgcg ggcgagccga
     1021 cgtgcgaggc cgacgtggct ctgagccgca cgggcggcat acagggccat gggcagttcc
     1081 acgccgtcgc ggcggtgcag cagctcggcg accgcctcca ccggaggcgt ccgcagacgg
     1141 acgtgcctcg accgggagcg aatggtgatg accacatcct cgagtgaggg tgcgcacagg
     1201 acccagacag tgcgggcaac cggctcctcg atggccttca ggagggcatc ggcggctcgc
     1261 tcggtgaggc ggtcggcatc ctcgatgatg atgacccgcc acggtccgac cgagggccgc
     1321 agtgccgaca tcgccgccag ctcacgggcc tgctccacct tgatcgacag gccctcagtg
     1381 gcgatcacgt cgacgtcagc gtgggtcccg tcgactgccg tgcggcattc gcggcagtcg
     1441 ccacatccat ggttcggaca ctccagggcc cccgcgaagg cccgagccgc caccgatcgc
     1501 cctgagcctg gtggccccgt cagcagccag gcatgggtca tcgccgagac ctcgtcgaca
     1561 gcgcgctgaa gcgttgccac ggcagcgtcc tggccgatga cgtccctcca gacactcatc
     1621 gcaggactcc catggccacg agccgctcca cgacctggcg atggaccagc tcggcaggct
     1681 gggtgccgtc gacgaccagg taacgctgcg ggttgccgct cgccatcgcc aggaagtggg
     1741 cacggatcgc ctcgtggaag gcatcttcct ccgactccag tcggtcgtgc acggcaccac
     1801 gacgtcgtcg accctcctgc gcagagacgt cgacgatgac cgtcaggtca ggcaccagcc
     1861 cgccgacggc ccacatggtg atgtcgtgga tctcctgggc gcccagcccg cggcccgctc
     1921 cctgataggc gaccgaggag tccgtgtaac ggtcggtgag gacgacgtcc ccagcggcca
     1981 gcgacggggc gatgagctgc tcgacatgat gcgccttgtc cgcggcgaac aggagcgcct
     2041 cggcgcgcgg cgcgacgtgg tcaccgtgca gcacgaggtc acgaatccgc cgaccgagct
     2101 cggtgccccc cggttgacgc gtcaccgtga cgctccggcc ggctgcttcg agggcctcac
     2161 gcagcagctc gacctgggtg gacttgccgg cgccgtcgcc gccctcgaag gcaatgaaaa
     2221 gtccgtcggt cacgcgccga gcctaggcca gcggccagac aaccccgtat gccgcgtgcg
     2281 acggctcagt ccgagtgccg atcagcgttc gcgtggatcg ccgcacggac gtactccgac
     2341 aaccccgtgc ggatctcgtc gtaggtcgcc gtgaaccgcg gatcggagac gtagaggtcc
     2401 gccagaccgc ggtgcgcctc gtacgaacag tcatagaagc gctggtcgat cgagcgccga
     2461 tgctgttcgg cggcctccat ggccatcacg ctcgtcggag gctctcccgc gtccatggcc
     2521 gcgacaaagg ctgcctggac cgcgtcactc tcggccttga tctgcgccca gtccgccgcc
     2581 gtgtaggtct tggtgcggcg ctgcgactgt cgccaggcgt cggtgtcccc ccagcgctcc
     2641 tgagcctctg cctgcgcgtc atggaagccc tcgccgaaga gctccttgag gtcctccggc
     2701 gatgctggct gctcgttcat ctctctctcc aatgctctgt cgatggcttg gacgagctcc
     2761 gtcagctcct ccaaccggcc ggtgaccgct gcccgctgtc ggcgcaggtg ctccgccgca
     2821 ctctcggggt ggtccagcag cagggctatc tcctccaggg cgaaccccag ccgtcggtac
     2881 accacgacgt gttgcagccg agtgagatcc gtttcggtgt aaagccggta cccggccagc
     2941 gagcgcccgc tcggctgcag caggccgatc tcgtcgtagt gatgcaacga gcgcacggtg
     3001 atgccgaacc gctcagccac ctgccccacg gtcaggacgg gagcctgcgt ctgcctctcg
     3061 tgcgcgctca tgaccccact gtgacgcctc acgtcaggtg agggtcaacc ccgatcctcg
     3121 atcccgccat ggctcaccga caccggcgag cgcgaaacca tccggagccc ccagagcgac
     3181 gcgggtacga ggaggacacc caacgcggca taccctccgg caacgcccag cagggccacg
     3241 acgaacccgc caagcccgct ggcggccccg acgctccagg acatgaacgc gcccaccgtc
     3301 accgtgtcgg attccggggt gtgctcggcg aacgccgcca tcatccccag gaaccagacg
     3361 cccagtcccc cgatcagcac gttcgccacc acgccgtaca aggcccgagc cggcgagtcg
     3421 atggggtgct ggaaggcgac gtacatgccc gcaccgacga ccaccaggga gaccgccgac
     3481 accaaggcga ggcgcagggt gtcgaccacc cggccgaaca cccccatgcg ggtgccgatc
     3541 agcgcagcca gggcgccgcc ggcgggagag gcggccagca cgaggggaag cagcttcgtg
     3601 ctggtcaccg cggggctcgc cgtctcgggg acggtgccga ccagggcgcc tatccaggtc
     3661 acacaggcca gcatccgcaa caacggaatc gaccacacga cccgcggcgc ccttccgaag
     3721 atggatcccg aggtgctggt cggtccctct gggtcgaccc gggcgaaatg gatggatgcg
     3781 atgaccagtc ccgccactcc gaagctgagg gcgtcgacgg ccaaggcgac gcgggggctg
     3841 aacgtggccg cgagggcgcc gccgccagcc aggccgacca cctggacagc ttggccgaac
     3901 ccgccgacca tgccgaagaa cttgccccgg acggaccggg gaacggcctc ggccaacgcg
     3961 gccatctgca cgccacgcgt ggccacacca gccgcgccga gcatcgccgc ggcgaggatc
     4021 gcggtgacgg cgctcggtgc cacgatcgcg ggaagcaggg cgacgccacc gacgaggttc
     4081 agcagcagct ggaccggccg acgctgacga tgctgaaggc gaggggcgac gaacaaggtc
     4141 acgagcaaac cggggaggac gttcgccgcg agcaccatcg ccgtgccgaa cagtcggctg
     4201 gagtggtaac ccacgacgat gagcgccgcc agaccgatat aggtgccgag cccgtcgatg
     4261 acgttggcga cagccatccg gaacgcgtgc gggtagtcgc gaaggcgcct gaggtccgcg
     4321 gcgtcagtct gagcattgcc catccagccg caccaccttt gtcactcgca gtatcgaccg
     4381 tgagaatcgc tcacccagca aggtcgcgca accgcagatg gccctgcacc accgcgggcg
     4441 accatacccc ggggccggcg tcaggcggcg ggtatcgaga cggatgcttg gtcagctttt
     4501 gacaggtatg ccgattcgcc cacaacgcgg ccccccacaa gggtggtgac ctggtcggcg
     4561 accgcacgaa ccagccccgg atggtggtcg accaggagca ccgtccggcc cgcggcggcc
     4621 cgtcgcacga cgtcggtcag ggcatgcaac tgccccgggc ccagtcccgc gctcggttcg
     4681 tccaggacca gcagccgggg ccggaggctc agagccagtt cgatctccag ggcggtgcgc
     4741 tcgagcgggc taagcagccc cagcccaacc tcggctcggt cccccaggca cgttcgtgcc
     4801 ggcgcgtcat ggccggccac gaacgaggcg tagtccgcgg cggcgacacc gtcgaacagg
     4861 acggggctgc gaagggcccg cgccatacct ccgacgaggc cgggcttcgg cagccggccc
     4921 gtgacctcga cgccggcgaa ccacactgag ccgctgtccg gggcgaggaa gcccgtcagc
     4981 acgttgagca cggtggtctt cccggagcct cgggggccga ccacggcatg caacgacccc
     5041 tgggtaacct ccaggtccac cccgcgcagc acgggcacgc cgccgagccg cttgcacaaa
     5101 ccctcggcga gcaccaggac gggccccgac gaaccgacca ccggcgacct cctcgctgca
     5161 agcccaggct cagagcaagc ctaggctcag actcccttcg cagccttctt cgtgaccttc
     5221 ttggcgacct tcttggtggc cgttgcggtc gccttggtcg tcttcttcgc ggcagtcttc
     5281 ttggtggtct tcttcgtggc acgcttgcgc gtggtcgggc ccttggcgcg cttctccgcc
     5341 aggagctcgg ccccacgctc cgccgtgatg gactcggggt cgtcgtcctt gcgcagcgtc
     5401 gcgttcgtct cgccgtcggt gacgtagggg ccgaagcggc catccttgac caccatcgcc
     5461 ttgccggaca ccgggtcgtc gccgagctcc ttcagcggtg ccgaggcagc ccgtccgcgc
     5521 tgcttgggct gggagtagat cgccagcgcc tcctcgaggg tgatgtcgaa gagctgctgt
     5581 tcgctggcca gcgaacgcga gtcggtgccc ttcttgaggt acggcccata gcggccgttc
     5641 tgcgccgtga tctcggcgcc ttcctcgtcg gcgccgacga cccggggcag actcagcagc
     5701 ttgagggcgg tcggcagatc gagcgtggcc aggtccatgt ccttgaacag cgaggcagtc
     5761 cgcggcttga ccttggcctt gccacgcgtc ttggccggcg caccgtcccc ggccgcctcg
     5821 tcgagaacct cggtcacgta tggcccgtag cgaccggcct tcgccacgat gtcgcggccg
     5881 gtggcggggt cctggccgag caccttgcca tcatcggccg aggcgtcgag cagctcccga
     5941 gcccgtgccg gagtcatctc gtcaggagcg atgtcgtcgt tgatcgtggc gcggcgcggc
     6001 gtctcgctcg caccctcggt catctcgccg gtcgccgggt cgactccggc cgggacggtc
     6061 tcttcgacat agggcccgta gcgcccgacc cgcacgacga tgccgtcacc gatcgcgatg
     6121 gtggagatct cgcgggcgtc gatctcgccg aggtcttcga ccaggtgctt caggccctgc
     6181 ccagcccgct ctgaaccacc ggcgaggtcg ctcccgaagt agaagcgatg cagccacgcg
     6241 gcgcgttgct cgtcaccacc ggcgatgcgg tcgaggtcct cctccatgga cgcagtgaag
     6301 tcatagtcga cgagctcggt gaagtgctcc tccagaagcc gggtcacggc gaacgccagc
     6361 caggtcggga tcagcgcaga accccgggtg acgacatagc cgcggtcctg gatcgtgccc
     6421 acagtcgagg cataggtcga cgggcggcca atcccccgct cttccatggc cttgaccagg
     6481 gtggcctcgg tgtagcgggg tggcggggtg gtttcgtgcc cgtccgcctc ggcgcgcacc
     6541 accgtgatgg cgacgccctc gctcagcttc ggcaggcgtc gctcctcctc ctgcaggccg
     6601 gcccgggcgg cctcctcgac atcacgaccc tcctcgtatg ccgcgaggaa gcctcggaag
     6661 gtgatcacgg ttcccgaagc gctgaactcc acgacccggc cgtccgccaa agggccgccg
     6721 agcttcaccg tggcagtgga tccgcgggcg tcggccatct gcgaggccac ggtgcgcttc
     6781 cagatgagct cgtagagcgc gaactcgtcg ccgcgcagct ggccggcgac ctgggcgggg
     6841 gtgcggaagc ggtcgcctgc cgggcggatg gcctcgtgcg cctcctgggc gttcttgacc
     6901 ttcttctcgt acagccgagg tgactgcggg acgtactccg cgccatacag atcccgtgcc
     6961 tgctgccgcg cggctgtcag ggccgcctcc gacagcgtgg tgctgtcggt acgcatgtag
     7021 gtgatgtagc cgttctcgta caaccgctgt gccacccgca tcgcgttctt cgacgacagg
     7081 cgcagcttgc gagacgcctc ctgctgcaac gtgctcgtgg tgaacggggc tgaagggcgc
     7141 cgggtgtaag gccgctcctg gacgctggtg acgcgcaccg atgccgaaag cacctgtgtc
     7201 gcaatggagt tcgcggtcgc ctcgtcaagg tgcacgaccg cgttgctctt cagggtgccg
     7261 tcgtcggcga agtcgcgtcc cgtggcgacg cgcgccccgt caacggcgct gagacgggcc
     7321 tggaactggt tgccggcgcc atcgggagtg aagtcgccct cgacgtccca gtaggcggcg
     7381 cggacgaatg ccatccgctc ccgctcccgc tcgaccacca tgcgggttgc cacggactgc
     7441 acccgacccg cggacagccc tgccttgacc ttgcgccaca gcacggggct gacctcgtag
     7501 ccatagaggc ggtcgaggat gcggcgggtc tcctgggcgt cgaccagagc ggtgtccagg
     7561 tcgcgggtgg tggcagccgc tcgctggatc gcctccttgg tgatctcgtg gaacaccatt
     7621 cgcttgaccg ggaccttcgg ctggagcacc tcgagcaggt gccaggcgat cgcctcgccc
     7681 tcgcggtcct catcagtggc caggtacagc tcgtcagcgc ccttgagcag gcgcttgagc
     7741 tcggagacct tcttcttctt gtcggcgtcg acgacgtagt acgcctcgaa gccgcggtcc
     7801 acgtcgacgc cgaaccggcc gaacgggccc ttcttgatat cggccggcat ctccgaggga
     7861 gtcgggatgt cgcggatgtg accgacggac gcctcgacgt cccagtcctt gcctagatag
     7921 ccgccgatcg tcttggcctt ggccggcgac tcgacgatga caagcttgcg ccccgtactc
     7981 acagatcaac cctcacttct gctgacatgt gctgcggatt cgtcgcagca tcgacatggc
     8041 aacgcggatg acggtagccc agcgcgtcaa atccgtgctc gacggtctcg cgtctcgacg
     8101 ctaattgatt gaaggttcaa ttaagcgtat gctgtgaacc atgaccgaga acgccaccat
     8161 cgcgcggcag cctgtgctct atctcagcca cggcgcgcca ccgttggcgg acgatcccgt
     8221 gtggaccgaa cagctcgccg gctggtcgcg tgacgtcggc cgtcccacga gcatcctgat
     8281 gatctcggcc cactgggagg aggcgccgct ggcgctgagc gccaccagtg gcaaggtgcc
     8341 gctcgtctac gacttctggg gtttcccccg ccggtactac gaggtcacgt acaacgcgcc
     8401 gggcgcacct gcgctggccg acagcgtgac cacgctgctg cactcgaccg acacccccgt
     8461 gcaacgcgac gagacccgcg gactcgacca cggcgcctac gtgccgctcg tcgagatgta
     8521 ccccgacgcc gacatccccg tcctgcagat gtcgatgccc accctcgacc ctcaggcgtt
     8581 gttcgacctg gggcgacggc tggcaccgct gcgcgacgag ggcaccctga tcgtgggctc
     8641 cggcttcacg acgcacaacc tgcgctggtt caaccccggc gccggcgccg actcaccacc
     8701 tcccaccccg tcggccgagt tcgaccactg ggcggcggaa gcgctggagc gcaaggacgt
     8761 cgacgcgatc ctggacttca tgaacaaggc cccggccgct cgcgaggccc atccgaggac
     8821 cgagcactgg gcgcccttgt acgtcagtct cggcgcggca tacgcctcgg gcagcctgga
     8881 caacacgagc gtcatcgacg ggttctggtt cggcctgagc aagcggtcct ggcagttcgc
     8941 ctgagggggt gactcgggcg gttccggctc ctacggtggg atcatgatca ccgccctgca
     9001 cactctcatc tacgccgaag accccgacgc tgctcgagcc ttcttccgcg acgtcctgca
     9061 gttccctggc gccgacaccg gaggcgggtg gctcatcttc ggcaccggcc cgagcgagct
     9121 cgccctacac ccgtcctcct gggagcacga gggtcagacc ggtgggactg accagcgctt
     9181 cgacctgtcg ttgatgtgtg acgacctcga ggtcacccgc aaggagctcg agggtcgcgg
     9241 tgccatcttc gagggagacg tcgccgagca gcgttggggg tcgacgatcc agctcaagat
     9301 ccctggcgct ggaaccatga tgctgttcca gccgaagtac gaccctccgg cgcttcggca
     9361 cccggacctc gagcccatgt ggtgacggcg aggtatgccg cgcagcgagc tccacggcat
     9421 gccttcagtc ggtcagtggg tgccggcgcg acggcgcgga gccggccggg tggggtcgtc
     9481 ttctgcgggc tcgacgtgtt cgggcacgag gatcggccgc aggcgcgccc acgccaggaa
     9541 caccaccgac gcgacgacca gcgccagtcc ggtccatagg ttggcgttga tgccgccggt
     9601 cttggccgag gccgtgtcgc cgaagaaccc ggcgagcaca aggatcacgc catagatgcc
     9661 cagcagggcg ccgatgatgt tgcggatgtc gaacgccccg gcggtcttc
//
LOCUS       DASYFY010000434         2754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_293564, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000434 DASYFY010000000
VERSION     DASYFY010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293564"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VGN19_08680"
     CDS             <1..456
                     /locus_tag="VGN19_08680"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HEV7196001.1"
                     /translation="LADVLQPFGDTALQVLGAGQIPPNPSELLGSETMARLITTLEGM
                     FDYVIIDAPPLLPVTDATVLSTLAGGVVIIAGCGVVNKEQLARSIEALNSVKGDIMGI
                     VVNRNPTHGAHAESYYYREGYAPHNPEGSRKDRAKEAKERARERQGAPI"
     gene            complement(464..1528)
                     /locus_tag="VGN19_08685"
     CDS             complement(464..1528)
                     /locus_tag="VGN19_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HEV7196002.1"
                     /translation="MREAIGASAPVVDPSPTATPSPLLSHHGAVEGDGRDAGVAAHYG
                     DPLREQRLLTEGLAVVDLSHRGVVTVSGPDRLSWLHSITTQQLTGVSPRHSVESLVLS
                     PKGHIEHDLHLVDDGETTWITTEPGEAPSLVAWLDSMRFMLRVEVRDVTHDWAVVGEP
                     TATESQPGEALAWRDPWPGLVGDTAAYGQVEDHPGAERAWREVLTPRESLVDLVGHRD
                     LAGSWASEALRIAAWRPRLGFETDHRTIPHELDWLRTAVHLHKGCYRGQETVARVHNL
                     GRPPRRLVFLHLDGSGHTLPSVGELITVGDRQVGHLTSVGRHFEDGPIALALVKRNTP
                     IDAELVVAGISAAQQVVVLP"
     gene            complement(1513..1929)
                     /locus_tag="VGN19_08690"
     CDS             complement(1513..1929)
                     /locus_tag="VGN19_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEV7196003.1"
                     /translation="MHDVGERLRASGRRMTSQRQRVLDAVEALAHATPEDVVSAVGSD
                     GGSPLAPSTVYRALEALEELGVVSHTHLDHRAPSYHLAEHADHVHLVCRDCGRVEQCS
                     PELADAFVGNVLRVNGFVADVTHMAIHGQCSSCAKR"
     gene            complement(1972..>2754)
                     /locus_tag="VGN19_08695"
     CDS             complement(1972..>2754)
                     /locus_tag="VGN19_08695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196004.1"
                     /translation="TTAAGGASPTTGAGGRIPIAPLTVGLVAVDQSTAMRFTVGTCAK
                     VGSVVEVSRDGGATWTARSTPFDSVVRIRVKPNQSQFSVGATRASGCVPALRQSPSLS
                     GAWGSAVKATTVWFRDPRDPNSVGLPTGGTGRPCQGSVIVDLAVSDSGAAVLCGSGDV
                     LMTTTGAKWQSTGTVTGALALAVDAKTQPYAVTQGVGACAGLAVVEPASPTTVVGCIP
                     TDLKGVDPGSVALSVSAQAAWLRIGPTTYRASASLSDWKKTA"
BASE COUNT          449 a          974 c          951 g          380 t
ORIGIN      
        1 ctcgccgacg tgcttcagcc cttcggagac acggccctgc aggtgctcgg cgccggacag
       61 atcccgccca accccagcga gctactgggc tcggagacga tggcgcgcct catcaccacg
      121 ctcgagggaa tgttcgacta cgtcatcatc gacgcgccgc cgttgctgcc ggtgaccgac
      181 gccaccgtgc tcagcacgct cgccggaggc gtggtgatca tcgcgggctg tggagtggtc
      241 aacaaggagc agctggcccg ttcgatcgag gcgttgaaca gcgtcaaggg cgacatcatg
      301 ggcatcgtcg tcaaccggaa ccccacgcac ggcgcccatg cggagagcta ctactaccgc
      361 gagggctacg ccccgcacaa tcccgagggg tcgcgcaagg accgggccaa agaggcgaag
      421 gagcgggccc gggagcgtca gggcgcgccg atctgaggtc gccctagggc agaacgacga
      481 cctgctgcgc cgcactgatc ccggcaacga ccagctcggc gtcgatgggc gtgttgcgct
      541 tcaccagggc gagagcgatg ggcccgtcct cgaagtgccg gccgactgag gtcagatggc
      601 cgacctgacg gtcgcccacg gtgatgagct cgccgacgga cggcaacgtg tgccccgagc
      661 cgtcgaggtg caggaacacc agccgccgcg gcggtcgtcc gaggttgtgc accctggcca
      721 ccgtctcctg accgcggtaa caccccttgt gcaggtgcac ggccgtgcgc agccagtcga
      781 gctcgtgcgg gatcgttcgg tggtcggtct cgaaccccag acgcggacgc caggccgcga
      841 tgcgcagcgc ctcgctggcc caggaacccg ccaggtctcg gtggccgacc aggtcgacca
      901 acgactcccg gggagtcagc acctcgcgcc aggcgcgctc cgcgcccggg tggtcctcga
      961 cctgaccgta tgccgcggtg tcaccgacga gccctggcca cggatcgcgc cacgccagag
     1021 cctcaccggg ctgcgactcg gttgcggtgg gctcgccgac gaccgcccag tcgtgggtca
     1081 cgtcgcgcac ctcgacccgc agcatgaacc gcatcgagtc cagccacgcg accagtgacg
     1141 gcgcctcgcc cggctcggtc gtgatccagg tcgtctcgcc gtcgtcgacg aggtggaggt
     1201 cgtgctcgat gtgccccttc gggctcagca cgagggactc caccgagtgg cgcggagaaa
     1261 ctccggtgag ctgctgcgtc gtgatcgagt gaagccagga gagccggtcg ggacccgaga
     1321 cggtcacgac accgcggtgg gaaagatcga cgaccgccag cccctcggtc aagaggcgct
     1381 gttcgcgcag cgggtcgcca tagtgggcgg caacccctgc atcccgaccg tcgccctcaa
     1441 cggccccgtg gtggctcagc aggggcgagg gggtggccgt cggagacggg tccaccacgg
     1501 gcgccgacgc tcctatcgct tcgcgcatga gctgcactgt ccgtggatcg ccatgtgtgt
     1561 cacatcagca acaaagccat tgacccgcag aacattcccc acgaaggcgt ccgcgagctc
     1621 gggagagcac tgctcgaccc gaccgcagtc gcgacagacc aggtggacgt ggtcggcgtg
     1681 ttccgcgagg tggtagctgg gcgcccggtg gtccaggtgc gtgtgactga cgactcccag
     1741 ctcctcgaga gcctccaggg cgcgatacac ggtcgaagga gccagcgggc tcccaccgtc
     1801 cgagcccacc gccgagacga cgtcctcggg ggtggcatgc gccaacgcct cgacggcatc
     1861 aagcacccgc tggcgttgcg aggtcatccg tcgcccactg gcccgcaacc gctcgccgac
     1921 atcgtgcacc acaccactgt acggtccggg tcgcggccga cgaactgctc gtcaggctgt
     1981 cttcttccag tccgatagcg atgcagaagc ccggtacgtc gtcgggccga tccgcagcca
     2041 cgcagcctgc gcggagacgc tcagcgccac cgaaccgggg tcgacgccct tgaggtccgt
     2101 ggggatgcag cccaccacgg tggtcgggga cgcgggctcg acgaccgcca ggccggcgca
     2161 cgccccaacg ccctgggtca cggcatacgg ctgggtcttg gcatcgacgg ccagagcaag
     2221 tgcaccggtg accgttcccg tgctctgcca cttggccccg gtcgtggtca tcagtacgtc
     2281 cccagagccg cacaggacgg cagcgcctga gtccgagacg gccaggtcga cgatcaccga
     2341 cccctggcag ggccggccgg tcccacccgt gggcagcccc acggagttgg ggtcacgagg
     2401 gtcgcggaac cacacggtgg tcgccttgac cgcgctcccc cacgcgccgc tcagcgacgg
     2461 gctctgacga agtgcaggga cgcatccgct ggctcgagtg gccccgaccg agaactggga
     2521 ctggttgggc ttcacccgaa tgcggacgac ggagtcgaac ggcgtggatc gcgcggtcca
     2581 ggtggccccg ccgtcgcggc tgacctccac gacggatccg accttggcac aggtcccgac
     2641 ggtgaagcgc atcgcggttg actggtcgac ggccacgagg ccgaccgtca gcggcgcgat
     2701 cggaatgcgg ccaccggcgc cggtggtggg cgatgcgccg cctgcggccg tcgt
//
LOCUS       DASYFY010000435         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1083026, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000435 DASYFY010000000
VERSION     DASYFY010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1083026"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..386
                     /locus_tag="VGN19_08700"
     CDS             <1..386
                     /locus_tag="VGN19_08700"
                     /inference="COORDINATES: protein motif:HMM:NF021079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Trp biosynthesis-associated membrane protein"
                     /protein_id="HEV7196005.1"
                     /translation="LVLGLTGLGLGLLVAKVVIDPSGVMGAVAARALGRTGTVHTQVS
                     ATGWPWLCLVAAALLLFAAGGGWVGASSWRGLGARYEAQGATAAGPRGQRVGSDWDRL
                     DAGDDPTVAQTPNRDQATAVDRDPT"
     gene            475..732
                     /locus_tag="VGN19_08705"
     CDS             475..732
                     /locus_tag="VGN19_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HGxxPAAW family protein"
                     /protein_id="HEV7196006.1"
                     /translation="MSEHEIDEDHGHSVAAWTGVLVILVGSALASLAVVITNVPLFVV
                     GIVVCILGVVAGKLLSMAGYGTKVVDGPDSPESNRPEVGIG"
     gene            876..1661
                     /gene="trpC"
                     /locus_tag="VGN19_08710"
     CDS             876..1661
                     /gene="trpC"
                     /locus_tag="VGN19_08710"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEV7196007.1"
                     /translation="MPTVLDDIVAGVREDLALAQAAIPRARIEELAAQAPPALDAEHA
                     LRRPGLSLIAEVKRASPSKGALADIADPAALAADYEAAGASVVSVLTERRRFKGSLDD
                     LDAVRRTVRIPVLRKDFMVEDYQLFEARAHGADVILLIVAALAQPDLVRMQALARELG
                     MTALVEVHDEHETARAVDAGASVVGVNARNLKTLAVDPDTFGRLAALIPDTCVKVAES
                     GVSGPADAARYAALGAGAVLVGEALVRDGEPRRAAYDLIAAGA"
     gene            1668..>1976
                     /locus_tag="VGN19_08715"
     CDS             1668..>1976
                     /locus_tag="VGN19_08715"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148569.1"
                     /note="catalyzes the formation of L-tryptophan from
                     L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEV7196008.1"
                     /translation="MNDFTPEPVARAGRFGEFGGRYVPEALIPALEELDEARRKAMVD
                     PEFLGELDRLHRTYTGRPSIITEVPRFAAHAGNARIILKREDLNHTGSHKINNVLAQA
                     L"
BASE COUNT          303 a          693 c          703 g          277 t
ORIGIN      
        1 tgctggtgct cggcctcacc gggctcgggc tcggcctgct cgtcgccaag gtcgtgatcg
       61 acccttcggg ggtcatgggg gccgtggcgg cccgagcgtt ggggcgcacc ggcacggtgc
      121 acacccaggt gtcggccacg ggatggccct ggctgtgcct cgtcgccgcc gcgctgctgc
      181 tgtttgccgc aggtggtggc tgggtgggcg ccagtagctg gcgagggctc ggtgcacgct
      241 acgaggccca aggtgccacc gcggcgggtc cccgcggtca gcgcgtgggc agcgactggg
      301 accgcctgga cgcgggcgac gaccccacag tggcgcagac cccgaaccgg gaccaagcca
      361 cagccgtcga ccgtgacccg acctgacaca atgagcacca cagaccagaa ccgcagacca
      421 gcaccacagg caactgccct cgcgacccag cagacccaca ggagcgtgta cccgatgtca
      481 gagcacgaga tcgacgaaga ccacggccac agcgttgccg cgtggacagg ggttctggtc
      541 atcctcgtcg ggagcgcgct ggcgtcgctg gccgtggtca tcaccaacgt gccgctgttc
      601 gtggtcggca tcgtggtctg catcctcggc gtcgtcgccg gcaagctgct cagcatggcg
      661 ggctacggca ccaaggtcgt tgacggcccc gacagtccgg agagcaaccg ccccgaggtc
      721 gggatcggct gacaagccca atcgactgct cgccggatcg gaaggccccg taggtcggga
      781 tcggctgacc tgactcgatg gtcggcgcga cggccggctc gtccaggtcc tgacccgcgg
      841 ccaggctgca cggtcgcgct ggatagcctg tctgcatgcc caccgtgctc gacgacatcg
      901 ttgccggcgt ccgcgaagac ctcgcgctcg cacaggccgc gatcccgcgg gcgcggatcg
      961 aggagctggc cgcccaggct ccccccgccc tggatgcgga gcatgccctg cgtcgtcctg
     1021 gactgtcgct gatcgccgag gtgaagcgcg ccagccccag caagggtgct ctcgctgaca
     1081 tcgccgatcc cgcggcgctg gcggctgact acgaggcggc cggagcgagc gtggtcagcg
     1141 tgctcaccga gcgccgacgg ttcaagggct cgctcgacga cctggacgcc gtgcggcgga
     1201 ctgtgcggat cccggtgcta cgcaaggact tcatggtcga ggactaccag ctgttcgaag
     1261 cacgcgccca tggcgccgac gtcatcctgc tgatcgtggc ggcgctggct cagcctgacc
     1321 tggtccggat gcaggcgttg gcccgcgagc tgggaatgac cgccctggtg gaggtccacg
     1381 acgagcacga gaccgcgcgg gccgtcgacg cgggtgccag cgtggtgggg gtcaacgcgc
     1441 gcaacctcaa gacgctcgcg gtcgaccctg acaccttcgg ccggctggct gcgctgatcc
     1501 ctgacacctg cgtgaaggtg gccgagtccg gcgtcagcgg accggccgac gcggcgcggt
     1561 atgccgcgct gggagcggga gccgtgctgg tgggagaggc gctcgtgcgc gacggcgaac
     1621 cgcgccgcgc ggcatacgac ctgatcgcgg cgggagccta gatagagatg aacgacttca
     1681 cccccgagcc tgtggcccgc gctgggcgct tcggtgagtt cggcgggcgc tacgtccccg
     1741 aggccctcat ccccgccctg gaggagctcg acgaggcgcg ccgcaaggcc atggtcgacc
     1801 ccgagttcct gggcgagctg gaccggctgc accggaccta cacgggacgc ccgagcatca
     1861 tcaccgaggt gccgcgcttc gccgcgcacg ccgggaatgc gcggatcatc ctcaagcgcg
     1921 aggacctcaa ccacaccgga tcccacaaga tcaacaacgt cctcgcccag gcgctg
//
LOCUS       DASYFY010000436         1732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_923766, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000436 DASYFY010000000
VERSION     DASYFY010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_923766"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1160)
                     /locus_tag="VGN19_08720"
     CDS             complement(<1..1160)
                     /locus_tag="VGN19_08720"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196009.1"
                     /translation="MQPDDAEAVGRLLTSLSPISAYRRFLGSSRGACAAYLSRLRSPS
                     QTLAATVALEHGALVGIASLHPENVRGAAEVALAVADDDQGEGIGTLLLEHLVDDAQG
                     LGLQRMTATVLTDNAAMMTVFRDLGLTMAAGHADAGVIDISLDLSVSDAYAERVAERN
                     LTSSAASYRRAMHPEAVVVMHDARGRKAARRMRRHLSNLGYAGPVTVRESHLPVPAHT
                     DLAVLCGLPRSVGRMVSACAEADVAAVLWPQAPFVTQRDQESLRKACARAGLLLLGPA
                     SRVRKLADPAGLLAAGASDRADRDGGGIVVVGARPEHLLTVLERHDLEVGAVLDLSWE
                     DLPDWSGAVVAALLEAGTRAVVVCRPPLAPMHWPPSLLNAVRQAGTLVVSLVP"
     gene            complement(1247..>1732)
                     /locus_tag="VGN19_08725"
     CDS             complement(1247..>1732)
                     /locus_tag="VGN19_08725"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196010.1"
                     /translation="PVAVARGATDPARSFTSPVTVGATTSPHSAGALTYAAAAATRRG
                     VPLYIVAAWAMPPTETWEYASTHGDAMAAFARRLREEADQAGQHACTYVRREHPELQL
                     HCDVVEMQPWAALEDGSRRAGLLVVGSRGTGGFEGLRLGSVACAALEHSRCPVVVVPS
                     L"
BASE COUNT          278 a          593 c          611 g          250 t
ORIGIN      
        1 ggcactagcg acaccaccag ggtgcctgct tgccggaccg cattcagcag actggggggc
       61 caatgcatag gggccagggg cgggcggcac accacgaccg cacgtgtgcc ggcctcgagc
      121 agggccgcga ccacggcccc ggaccagtcg ggcaggtcct cccaggacag gtcgaggacg
      181 gcgccgacct cgaggtcatg acgctcaagg accgtcaaga ggtgttcggg tcgggctccg
      241 acgacgacga tgcccccacc gtcgcggtct gctcggtcgc ttgcaccggc ggccagcagc
      301 ccggccgggt ccgcgagctt gcggacccgg gacgctggtc cgagcaggag gagtccagcc
      361 ctcgcgcatg ccttcctcag gctctcttgg tctcgctgcg tcacgaaggg agcctgcggc
      421 cacagcacgg cggccacgtc cgcctcagcg cacgcgctga ccatcctgcc gacgctacgg
      481 ggcaggccgc acagcacagc aaggtcggtg tgggccggaa cgggaaggtg tgactcccgg
      541 acggtgacgg ggcctgcata ccccaggttc gacaggtggc gccgcatccg acgggcagcc
      601 ttgcgacctc tggcgtcatg catgaccaca acagcctccg ggtgcatggc gcgtcggtag
      661 gaagcggcgg acgaggtcag gtttcgttcg gcgactcgct cggcgtaggc atctgacacg
      721 ctcaggtcca aggagatgtc gatgactccg gcgtcggcat gacctgcggc catggtcagt
      781 ccgaggtcgc gaaagacggt catcatcgct gcgttgtccg tgagcaccgt tgcggtcatc
      841 ctctgcagac ccaacccctg ggcgtcgtcc acaaggtgtt ccaacaacag cgtcccgatg
      901 ccttcgcctt ggtcgtcatc ggcgacggct agcgcaacct cggcggcacc gcgcacgttc
      961 tcaggatgca gcgaagcaat gcccacgagg gctccatgct cgagcgcgac ggtcgcggcg
     1021 agcgtttgtg acggggacct caagcgcgag aggtatgccg cgcaggcgcc gcgggagctg
     1081 ccgagaaaac gccggtaggc ggagatcggt gacaggctgg tgaggagccg accgacagcc
     1141 tcggcgtcgt caggttgcat gggacgcaac gtcgtcgtca cccctgtcct ggtgcggagc
     1201 cgcctcgctg ctcgcgtctg tgacgtcttc accgcctgtg acgtcttcac agcgacggca
     1261 ccacgacgac cgggcagcgc gagtgctcga gggccgcaca ggcgacgctg cccagcctca
     1321 gcccttcgaa gcccccggtg ccgcgtgaac ccaccacgag caggccggca cgccgcgacc
     1381 cgtcctccag tgcggcccac ggctgcatct cgaccacatc gcagtgcagc tggagctcgg
     1441 ggtgctctcg gcgcacgtag gtgcaggcgt gttgaccggc ctggtcggcc tcttcgcgca
     1501 acctccgcgc gaatgccgcc atggcgtcgc cgtgcgtgga cgcgtactcc cacgtctcgg
     1561 tgggtggcat ggcccaggcc gccacgatgt acaagggcac cccacgacgg gtagcggcgg
     1621 ccgcggcata cgtcagtgcg ccggcggagt gcggcgaggt ggtggccccg acagtcacgg
     1681 gcgaggtgaa gctgcgggct ggatcggtgg ctccccgagc aacggcgacg gg
//
LOCUS       DASYFY010000437         5333 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_30946, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000437 DASYFY010000000
VERSION     DASYFY010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5333
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30946"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..1009
                     /locus_tag="VGN19_08730"
     CDS             176..1009
                     /locus_tag="VGN19_08730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3662 and FHA domain-containing protein"
                     /protein_id="HEV7196011.1"
                     /translation="MGLFDRVEQRLERAVNGAFARAFKSEVQPVEIASAIRRAMDDRA
                     AIVGQGRTIVPNLYTVELSDTDFERLSGYDQELQDELVAAAQEHAESQRYQPGGPLQV
                     SFTNANDLETGVFRLRTSTVRRPGEPDGAAPSPAAAPLAAPPLPAGPVPAARRQFEDP
                     EATQRQPVAPPAAPRRVNPADRPWLDVDGERYPLMGAMTVLGRDDSADIILDDPGISR
                     RHSEIRVTTDGPHVVANIRDLGSTNGTFVNSERVTSQRLSDGDRITVGRTSVVYRAGR
                     R"
     gene            1017..1511
                     /locus_tag="VGN19_08735"
     CDS             1017..1511
                     /locus_tag="VGN19_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEV7196012.1"
                     /translation="MSELTLTIIRLGLLALIWIFVFSVVGVLRGDIYGTRVVSRTPRK
                     PASTPRRAPSQPAARPAKRQPHTVAPRSLVVTQGPLTGTALPLRDSGTVIGRNPECAL
                     VLDDDFASGRHARIYQQDGAWFVEDLGSTNGTYLGSERLTGPVRVEAGSTLRIGKTVI
                     ELRR"
     gene            1521..2870
                     /locus_tag="VGN19_08740"
     CDS             1521..2870
                     /locus_tag="VGN19_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HEV7196013.1"
                     /translation="MPLSFSYAARSDVGMVRSENQDSGYAGPRLLAMADGMGGHAGGD
                     IASSVAIGALADLDGEALGSAEATKALLQRISAANDEIAEMVKADPSLHGMGTTLIAI
                     LRSQNKLVLAHIGDSRAFLARDGKLTQITKDHSFVQSLVDEGRITEDEAIGHPQRSLV
                     TRVLTGQDDDEPDVTVREARIGDRYLIASDGLTDYVAGDTIAEIVTAGEPPSRTADRL
                     VELALKAGAPDNVTIVVGDVVDTSRVADTPSQPQIVGAAAVRTRGTRPIPLTPAAKAA
                     ALSREASGEPEDELTLAEEGPKSGPARWLRRAAVALLVLIVVGGGAYAAYDWSQRQYF
                     VGDHSGKVAIFQGVSQNLGPLSLSHVRTTSDVVVDDLPDFYRAQVQATIAKDTLTDAQ
                     ALVDQLRTEAAACAARKASGGVCTDTTSTPSSTGATGTTTSGPTTSTTPAPSVSTSR"
     gene            2875..4245
                     /locus_tag="VGN19_08745"
     CDS             2875..4245
                     /locus_tag="VGN19_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEV7196014.1"
                     /translation="MTTVSSFRPRTRRNVELVLLLLAVAIVVLAYVNVDLSATGSFPP
                     GLLTQGAGLLAISLAFHMLLRWRAAYADPLMLPIVTLLNGLGLVMIHRLDIAHGRSLT
                     GGLALRQLTWSAVAVGLAAAVLFFLRDHRTLRRYTFTAAVVGPALLLMPLLPFIGRTV
                     NGSRIWIGIGPFTFQPGEVTKIVLTIFFAGYLVQTRDALSLAGRKVLGLTLPRARDFG
                     PILVAWLASIIVLVFQKDLGSSLLLFGLFVAVLYVATERTSWIAIGMVLFCGGSYLAY
                     LVFTHVQSRVHLWLDPFASGQSDQLAKGLMGMAAGGLLGTGLGRGRPDLTYFSESDFI
                     VPSFGEELGLVGLFALLILYVLLVERGLRTALGVRDGFGKLLAAGLSFSMALQCFVVV
                     GGVTRVIPLTGLTTPFLSYGGSSLLANWSLVAILLRISDHARRPVAEDISPPAAEAKT
                     EVVAIR"
     gene            4242..>5333
                     /locus_tag="VGN19_08750"
     CDS             4242..>5333
                     /locus_tag="VGN19_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEV7196015.1"
                     /translation="MNAPIRRLSMVVAVLFCALLVSSTVIQFVQAKSLQDRPGNRRTL
                     LANYARERGQILVGGVPIAKSVATNDELKWLRTYPQAQLYSHVTGYYSFIYGAGAGLE
                     GSDNSLLSGSSDKLFYRRVTDLLTGKQPTGASLELTINPAAQAAADKALGNQRGAVVA
                     LNPSTGEILALVSHPAYDPSVLSSHKTNDVVKSWAQLNADHNSPVIDRAIAGNLYPPG
                     STFKLITAAAALSSGKFTEESQIPGPASLRLPQTTISLPNDDHQACGPNDKTTLTHAL
                     EVSCNTAFGWLGMQVGGGALRAQAAKFGFGDRFTVPMSVTPSTVPDQLNQPQLAQAAI
                     GQYDVRVTPLQVAMITAAIANPGVVMNPYL"
BASE COUNT          807 a         1993 c         1687 g          846 t
ORIGIN      
        1 ggacggccaa ttgtggcgta ccgcccccga cttctccaaa ctggcgcagg tcgggtcccc
       61 tctcgcgact acggaactgc cgcactgtgg cagggatcgc gcggcgtgca ttgcgggact
      121 gctcagccca gcccgttacg atcagggccg gaccgaagtg gaggaggtgc ccatcatggg
      181 tctgttcgac cgcgtcgaac aacgtctcga gcgtgccgtc aacggtgcct tcgcgcgtgc
      241 gttcaagtcg gaggttcagc ctgtcgagat cgccagcgcc atccgccggg ccatggacga
      301 ccgggccgca atcgtcggtc agggtcgcac catcgtgccc aacctctaca cggtcgagct
      361 ctcagacacg gacttcgagc ggctctccgg ctacgaccaa gagctccagg acgagctggt
      421 cgcggccgcg caggaacatg ccgagtccca gcggtaccag ccgggcggcc cgttgcaggt
      481 cagcttcacc aacgccaacg acctcgagac tggcgtcttc cggttgcgga cctcgacggt
      541 acgtcgaccc ggagagcccg acggtgcggc tccgagcccc gcagccgctc ccctcgcggc
      601 acctcccctc ccggccggcc cggtgccggc cgcgcggcgt cagttcgagg acccagaggc
      661 gacccagcgt cagccggtgg caccccccgc tgcacctcgc cgggtgaacc cggcggaccg
      721 tccttggctg gacgttgatg gcgagcggta cccgctcatg ggcgccatga ctgtgctcgg
      781 acgcgacgac agcgccgaca tcatcctgga cgacccgggg atctccaggc gccacagcga
      841 gatccgggtg acgaccgatg ggccccacgt cgtcgcgaac atccgcgacc tggggtcaac
      901 caacggcacg ttcgtcaaca gcgagcgcgt gaccagccaa cgtctgtccg atggggaccg
      961 gatcacggtg gggcggacgt ccgtcgtcta ccgggccggg cggcggtgag cgccacttga
     1021 gtgaactcac tctcacgatc atccggctcg ggctgctcgc tctcatatgg atcttcgtct
     1081 tcagtgtcgt cggcgtgctc cgcggcgaca tctacggcac gcgggtggtg agccggacgc
     1141 ctcgcaagcc ggcatcgacg ccgcgccgcg ccccctccca acctgctgct cgcccagcga
     1201 agcgccagcc tcacacggtc gctccgcggt ccctggtcgt gactcaggga ccactgaccg
     1261 gcacggcgtt gccgctgcgg gactccggaa ccgtgatcgg ccgcaacccc gagtgcgccc
     1321 tcgtgctcga cgacgacttc gccagcggcc ggcacgcccg gatctaccag caggacggtg
     1381 cctggttcgt cgaggacctc ggctcgacca acgggacgta cctcgggagc gagcggctca
     1441 ccggaccagt acgcgtggag gctggcagca ccctgcgcat cggcaagacc gtcatcgagc
     1501 tgcggcggta ggcagcgacg atgccccttt cctttagcta cgccgcgcga tccgacgtcg
     1561 gcatggtccg ttccgagaac caggactctg gatacgccgg accccgactg ctcgccatgg
     1621 ccgacgggat gggcgggcac gcgggcggag acatcgcctc ctcggtcgcg atcggcgcgc
     1681 tcgccgacct cgacggcgaa gcgttgggca gcgccgaggc gaccaaggct ctgctgcaac
     1741 gcatcagcgc ggccaacgac gagatcgccg agatggtcaa ggccgacccc agcctgcatg
     1801 gcatgggcac caccctcatc gcgatcctgc gctcccagaa caagctggtc ctcgcccaca
     1861 tcggggactc gcgcgctttt ctggcccgcg acggcaagct gacccagatc accaaggacc
     1921 actcgttcgt ccaaagcctc gtcgacgagg gccgcatcac cgaggacgag gccatcgggc
     1981 acccgcagcg ctcgctcgtc acccgggtcc tgaccgggca ggacgacgac gagccggacg
     2041 tcaccgtgcg cgaggcgcgc atcggcgacc gctacctgat cgcctccgac ggcctgacgg
     2101 actacgtcgc cggcgacacc atcgccgaga tcgtcaccgc gggcgagccc ccgagccgaa
     2161 cggccgaccg gctggtcgag ctggcgctca aggcgggcgc ccccgacaac gtgaccatcg
     2221 tggtcggcga cgtcgtcgac accagccgcg ttgcggacac cccgtcccag cctcagatcg
     2281 tgggcgccgc ggcggtccgc actcgcggaa cccgtcccat cccgctgacc ccggccgcga
     2341 aggccgccgc gctgtcccgc gaggcgagcg gcgaacccga ggacgagctc accctcgccg
     2401 aggaaggccc caagtcggga ccggcgcgat ggttacgcag ggcggcggtg gcgctgctgg
     2461 tgctcatcgt cgtgggcggc ggggcgtatg ccgcgtacga ctggtcccag cggcagtact
     2521 tcgtcggcga ccactccggc aaggtcgcca tcttccaagg cgtgtcacag aacctcggtc
     2581 cgctctcgtt gtcgcacgtg cggaccacgt ccgacgtggt cgtcgacgac ctccccgact
     2641 tctaccgggc ccaggtccag gccaccatcg ccaaggacac cttgaccgac gcccaagcgc
     2701 tggttgacca gctgcgcacc gaggccgcgg cctgcgcggc gcgcaaggcc agcgggggcg
     2761 tctgcaccga caccacctcg acaccgtcgt cgaccggcgc gaccggcacc acaacctcgg
     2821 gaccgacgac ctcgacgacg cccgcgccct ctgtgtcgac ctctcgttga cgacatgacc
     2881 acggtctcca gcttccgtcc gcggactcgt cgaaacgtcg agctcgtgct ccttctgctc
     2941 gccgtggcca tcgtcgtgct cgcctacgtc aacgtggacc tctcggccac cggctccttt
     3001 ccgcccgggc tgctcaccca gggtgccggt ctactcgcca tctccctggc cttccacatg
     3061 ctgctgcgct ggcgcgcggc atacgccgac ccgttgatgc tccccatcgt caccctcctc
     3121 aacgggctgg gactggtgat gatccaccgt ctggacatcg cccacgggcg ctcgctcact
     3181 ggcgggctgg cgttgcggca gctgacctgg agcgccgtcg cggtggggct cgccgcggcc
     3241 gtcctgttct tcctgcgcga ccaccgcacc ttgcgccgct acaccttcac cgcagcagtc
     3301 gtggggccag ccctgctgct catgccactg ctgcccttca tcgggcgcac cgtgaacggc
     3361 tcccggatct ggatcgggat cgggccgttc acgtttcagc ccggcgaggt caccaagatc
     3421 gtcctgacca tcttcttcgc tggctacctc gtgcagaccc gcgacgccct ctcgctcgcg
     3481 gggcgcaagg tcctcggact caccctgccc cgcgcccgtg acttcgggcc gatcctcgtc
     3541 gcctggctcg ccagcatcat cgtcctggtc ttccagaagg acctcggatc ctcgctgctg
     3601 ctgttcggac tgttcgtggc cgtgctctat gtcgccaccg aacgaacctc atggatcgcg
     3661 atcggcatgg tgctgttctg cggggggtcg tacctggcct acctggtgtt cacgcacgtc
     3721 cagtcccgcg tccacctctg gctggacccc ttcgcctccg ggcagtccga ccagctcgcc
     3781 aaggggctga tgggcatggc cgccggtggc ctgctgggca ctggactggg acggggtcgc
     3841 cccgacctca cctatttctc ggagtctgac ttcatcgtgc ccagcttcgg cgaggagctc
     3901 ggtctcgtcg gcctgttcgc gctgctgatc ctgtacgtcc tgctcgtcga gcgcggcctg
     3961 cggaccgccc tgggggtacg ggacggcttc ggcaagctgc tcgcggccgg cttgtcgttc
     4021 tcgatggcgc tgcagtgctt cgtggtcgtc ggcggcgtga cccgggtgat ccccctgacc
     4081 ggtctgacca caccgttcct gtcgtatggc gggtcctcac tactcgcgaa ctggtcgctc
     4141 gtcgccatcc tgctgcgcat cagcgaccat gcgcgacgcc cggtcgcgga ggacatcagc
     4201 cctccagccg ccgaggccaa gacagaggtc gtagccatcc gatgaacgct cccatccgcc
     4261 gactctcgat ggtcgtggca gtgctcttct gtgcgctgct cgtctcgtcc acggtcatcc
     4321 agttcgtcca ggcgaagtcg ctgcaggacc gcccggggaa ccgtcgcacg ctgctggcca
     4381 actacgcccg ggagcggggc cagatcctcg tcggcggtgt ccccatcgcg aagtccgtgg
     4441 cgaccaacga cgagctcaag tggttgcgca cctacccgca ggcccagctc tactcccacg
     4501 tcaccggcta ctactcgttc atctacggtg cgggcgccgg gctcgagggc tccgacaact
     4561 cgctgctgtc cgggtcctcc gacaagctct tctacagacg ggtcaccgac ctgctgaccg
     4621 gcaagcagcc gacgggggcg agcctggagc tcaccatcaa ccccgccgcc caggccgcgg
     4681 ctgacaaggc tttgggcaac cagcgtggcg ctgtcgtggc cctcaacccc tccacgggcg
     4741 agatcctcgc gctcgtcagc cacccggcat acgacccctc ggtcctgagc agtcacaaga
     4801 ccaacgacgt ggtgaagtcg tgggcgcagc tgaacgcgga ccacaactcc ccggtcatcg
     4861 accgggccat cgccggcaac ctgtatccgc cggggtcgac gttcaagctc atcacggcgg
     4921 cggccgcact cagcagtggc aagttcacgg aggagagcca gatccccggg cccgcgtccc
     4981 ttcgcctgcc gcagaccacc atctcgctgc ccaacgacga ccaccaggcc tgtggcccca
     5041 acgacaagac gacgctgacc cacgccctcg aggtgtcctg caacacggcg ttcggctggc
     5101 tcgggatgca ggtgggcggc ggcgcccttc gtgcccaggc ggcgaagttc ggcttcgggg
     5161 accggttcac ggtgcccatg tcggtgacgc cgagcaccgt gccagaccag ctcaaccagc
     5221 cccagctcgc gcaggcggct atcggccagt acgacgtgcg cgtcacgccg ctccaagtcg
     5281 ccatgatcac tgccgcgatc gccaaccccg gcgtggtcat gaacccttac ctg
//
LOCUS       DASYFY010000438         2910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_766781, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000438 DASYFY010000000
VERSION     DASYFY010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766781"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..777)
                     /locus_tag="VGN19_08755"
     CDS             complement(52..777)
                     /locus_tag="VGN19_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEV7196016.1"
                     /translation="MTSPDALTDAVTSPPGPLPAAVLWDMDGTLVDTEPYWISAEHAI
                     VEEAGGLWSDEYAHQLVGNDLMVSAQFIRENSPVELDPLQIIEELLQRVIAQVRDHVP
                     WRPGAVELLTALGEQGVPNALVTMSWRSLADAVVAALPEGTFATVITGDEVEHGKPHP
                     EPYLAAADALGVAVADCVAIEDSPTGVRSAVAAGVPTLAVPHVVPVPLTVGAVQVPSL
                     LGLAPIDLRLLFDGARQSSAGTT"
     gene            883..1734
                     /locus_tag="VGN19_08760"
     CDS             883..1734
                     /locus_tag="VGN19_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043248 - proteasome assembly [Evidence
                     IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEV7196017.1"
                     /translation="MIELEDVPELNDPIVIAAFEGWNDAGEAATAAVDHLVDVWDAEA
                     IAALDPEDYYDFQVNRPRVVLDDGRRRIHWRTTRILVARPASLDRDVVLIQGIEPSFR
                     WRAFAIELMEFAQQVGATTMFTLGALMADVAHTRPIPVTATSDDEDVLHRYDLEPGRY
                     EGPTGIVGVLADAASQSGLQSISCWAAVPHYAGHSPSPKATLALVSRLEELIDAPIPH
                     GDLQDGAKAWERGINELADTDEEVAEYVQSLEEAQDTADLPEASGDAIAREFERYLRR
                     RGQEGPG"
     gene            complement(1744..>2910)
                     /gene="mshC"
                     /locus_tag="VGN19_08765"
     CDS             complement(1744..>2910)
                     /gene="mshC"
                     /locus_tag="VGN19_08765"
                     /EC_number="6.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010125 - mycothiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--1-D-myo-inosityl
                     2-amino-2-deoxy-alpha-D-glucopyranoside ligase"
                     /protein_id="HEV7196018.1"
                     /translation="VRAVTPGPTARMYVCGITPYDATHLGHAATYVTFDLVGRVLRDA
                     GHAVTYVQNITDVDDPLLERAHRDGVDWQDLAAEEIALFREDMTALGVIPPDHYIGVV
                     ESIEPVGAAVHALVKLGAAYSVDTPDSTAGDDLYLDVSVEPGFGSVSNWTRDQMLAVF
                     ADRGGDPERPGKRDALDPLLWRAARDGEPSWVVDGLPEGRPGWHIECTAIALEHLGMA
                     FDVQGGGTDLVFPHHEMSATQAVALTSQRPFARTYTHQAMVGLDGKKMSKSKGNLVLV
                     SKLRADGVDPMAIRLALLNQHYRTEWSWTADLLTTAQDRLDSWRAALSVNAGPAVEDV
                     IADLRTRVADDLDTPGALRAVDRWAQQCLRRGGRDVGAPGVLARTIDAVLGVRV"
BASE COUNT          455 a         1043 c          989 g          423 t
ORIGIN      
        1 gccgctaccc gaggacgcgg cgcggttggc gctcgacccc agagtctcgg gtcaggtcgt
       61 gccggccgac gactgacgag ccccgtcgaa gagcaggcgc aggtcgatgg gcgcgagtcc
      121 gagcaggctt ggcacctgga cggcgccgac cgtgagcggg acgggcacca cgtgtggcac
      181 cgccaatgtg gggactccgg ccgccaccgc tgagcgcacc ccggtcgggg agtcctcgat
      241 cgcgacacag tcggccacgg cgacccctag cgcgtctgcc gcggcgaggt agggctcagg
      301 gtgaggtttg ccgtgctcga cctcgtcgcc ggtgatgacc gtcgcgaagg tgccttcggg
      361 aagggctgcc accaccgcgt ccgccagcga gcgccaggac atggtcacca acgcgttggg
      421 caccccctgc tccccaaggg cggtgagcag ctccaccgcg ccggggcgcc acggcacgtg
      481 gtcgcgcacc tgagcgatga cgcgctggag cagctcctcg atgatctgaa ggggatcgag
      541 ctccaccggc gagttctcgc ggatgaactg cgccgagacc atcaggtcgt tgccgacgag
      601 ctggtgggcg tactcgtcgc tccacagtcc cccggcctcc tcgactatgg cgtgctcggc
      661 actgatccag tacggctcgg tgtcgaccag agtgccgtcc atgtcccaca gcacggcggc
      721 cggcagcggg ccgggcgggc tggtcacggc atcggtcaga gcgtcaggcg aagtcacgct
      781 gactacccta cgtagactcc ccgtgcgggc tggcacccgt gcgtaggctg gacgtgacgg
      841 gaccgccccg ccgcccgcca ccccggcacc gaggagaacc gcgtgatcga gctcgaggac
      901 gttccagagc tgaacgaccc gatcgtcatc gccgccttcg aaggctggaa cgatgcgggc
      961 gaagcggcca cagctgccgt cgaccacctg gttgacgtct gggacgccga agcgatcgcc
     1021 gccctggacc cggaggacta ctacgacttc caggtgaacc ggccccgggt cgtcctcgac
     1081 gacggccgtc gtcggatcca ctggcgcacc acccggatcc tggtggcgcg gcccgcttcg
     1141 ctggaccgcg atgtcgtgct gatccagggc atagagccga gcttccggtg gcgggccttc
     1201 gccatcgagc tgatggagtt tgcccagcag gttggggcca cgacgatgtt caccttgggc
     1261 gccttgatgg cggacgtggc ccacactcgt cccatcccgg tgacggccac ctccgatgac
     1321 gaggacgtcc tacaccgcta cgacctcgag cccggccgct acgagggccc cacgggcatc
     1381 gtcggggtac tcgcggacgc ggcgagccag tcggggctgc agtcgatctc ctgctgggca
     1441 gcggtacccc actacgcggg tcactcgccc tcccccaagg ccaccctggc gttggtctca
     1501 cggctggagg agctgatcga cgcccccatc ccccacggcg acctccagga cggcgcgaag
     1561 gcctgggagc gcggcatcaa cgagctggcc gacaccgacg aggaggtcgc cgagtacgtc
     1621 cagtccctcg aagaggccca ggacaccgcc gacctgccgg aggccagtgg cgacgccatc
     1681 gcccgagagt tcgagcgcta cctgcgccga cgcggccagg agggccccgg ctagacctgg
     1741 accctagacg cgaaccccga ggacggcgtc gatggtccgg gccaggacgc cgggggctcc
     1801 cacgtctcgg ccaccgcggc gtagacactg ctgcgcccag cgatccacgg cccgcagcgc
     1861 cccgggggtg tcgaggtcgt ccgccacccg cgtccgcagg tcggcgatga cgtcctcgac
     1921 ggccggtccg gcgttgaccg acagcgcggc ccgccagctg tccagccggt cctgtgcagt
     1981 ggtcaagagg tcagcggtcc aggaccactc ggtccggtag tgctggttga gcagcgccag
     2041 ccggatggcc atcgggtcga cgccatctgc cctcagcttg gacaccagga ccaggttgcc
     2101 cttggacttg ctcatcttct tgccgtccag ccccaccatc gcctgatggg tgtaggtccg
     2161 cgcaaagggc cgttgcgagg tcagggccac ggcctgggtc gcactcatct cgtggtgggg
     2221 aaagaccagg tccgtgccac cgccctgaac gtcgaaggcc atccccaggt gctccaaggc
     2281 gatcgcagtg cattcgatgt gccagccggg acgcccctct ggcagcccgt ccaccaccca
     2341 ggagggctcg ccatcgcgcg cggcccgcca cagcaacggg tccagtgcgt cgcgcttgcc
     2401 tggtcgctcg gggtcgccgc cacggtcggc gaagaccgcc agcatctggt cgcgggtcca
     2461 gttcgacaca ctcccgaacc ctggctcgac ggacacatcc aggtagaggt cgtcaccagc
     2521 cgtcgagtcc ggggtgtcga ccgagtaggc cgcgcctagt ttcaccaggg catgaactgc
     2581 cgcgcccact ggctcgatgc tctcgaccac cccgatgtag tgatcggggg ggatcacccc
     2641 gagcgccgtc atgtcctcac ggaacagcgc gatctcctcg gcagccaggt cctgccagtc
     2701 caccccgtca cggtgtgctc gctccagcaa cgggtcgtcc acgtcggtga tgttctgcac
     2761 gtacgtcacg gcatggccgg cgtcccgcag gacccggcca accagatcga acgtcacata
     2821 ggtcgcggcg tggcccaggt gggtcgcgtc gtacggggtg atcccgcaga cgtacatccg
     2881 tgcggtcgga ccgggggtta ccgcgcgcac
//
LOCUS       DASYFY010000439         2724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1292957, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000439 DASYFY010000000
VERSION     DASYFY010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1292957"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VGN19_08770"
     CDS             <1..622
                     /locus_tag="VGN19_08770"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PrsW family glutamic-type intramembrane
                     protease"
                     /protein_id="HEV7196019.1"
                     /translation="QYLGLAYQNGGGGALTGTFVARCLFSPFAHPMFTVLTGIGVGIA
                     ATTRNRTLRILAPVGGYLLAVLSHAIWNAGAITGGAGLVGTYFLVEVPVFFAFVGLVV
                     WARRREGRLIGRYLSPYADAGWLSLAEVRMLSTMAGRRAARVWARSSGGRTALAAMRT
                     FQDAASELALLRVRMHHSAADDGAVGMERQLLDTLAASRQGFHGAY"
     gene            632..1870
                     /locus_tag="VGN19_08775"
     CDS             632..1870
                     /locus_tag="VGN19_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HEV7196020.1"
                     /translation="MRTLDLARTIGPEIIALRRTLHQVPELGLHLPLTQEAVLGALAG
                     LELEVTTGRDLSSVVAVLRGGAGQSQGSGGSGSGTGGRPAVLLRADMDALPVAEDLDV
                     DYVSLHPGLMHACGHDLHVASLVGAARILHSLRDQLAGDVVLMFQPGEEGPGGAKPMV
                     EDGVLEVAGRRVDAAYALHVFASEYPLGTWFGRSGPLMAAADEVKVRVIGSGGHGSQP
                     FRAKDPIPVACEIVLALQTLVTRGFDVFDPVVVTVGRFVGGTKDNIIPDDVVFEATLR
                     SLSEESRTAVSSRVERLAKGIAEAHGLTAEVEHRPGYPVTVNDAAEYAFARATIEDLF
                     GQGRYQHQKDPEMGSEDFSFVAQQVPSAYVNLSACPAADYDAAPDNHSARAEFDDSVV
                     PDAAALLAELALRRLEQLSR"
     gene            complement(1881..2564)
                     /locus_tag="VGN19_08780"
     CDS             complement(1881..2564)
                     /locus_tag="VGN19_08780"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HEV7196021.1"
                     /translation="MSAVVSVYARAVSDDPALTELLDAQELERSLRRSNPMRYITAHA
                     LLRRVVADRTGQAPRDVAFDRHCATCGSTAHGKPVVRDHPDLHVSLSYAGRLALAAVT
                     GSGEAGVDVEQVEDADHEGFDLSTLALDEQPAFGAVAAYRLGAARAQVWARKEAVLKA
                     TGHGLVVDPREVVVTGPDEDAALEEWRGERPLASPVQLIDVPLHVDGYAAAVAVLCPR
                     SVRLEVFEH"
     gene            2640..2716
                     /locus_tag="VGN19_08785"
     tRNA            2640..2716
                     /locus_tag="VGN19_08785"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2674..2676,aa:Arg,seq:tct)
BASE COUNT          379 a          977 c          941 g          427 t
ORIGIN      
        1 ccagtacctc gggctcgcct accagaacgg cggcggcggg gccctcaccg gcacgttcgt
       61 cgcccgctgt ctgttctcgc ccttcgcgca ccccatgttc accgtcctca cggggatcgg
      121 cgtgggcatc gctgccacga cccgcaaccg aaccctccgg atcctggcgc cggtcggcgg
      181 ctacctgctc gcggtgctgt cccacgcgat ctggaacgcc ggggcgatca ccggcggtgc
      241 cgggctcgtc ggcacgtact tcctggtcga ggtacccgtc ttcttcgcct tcgtggggct
      301 ggtggtctgg gcgcgaaggc gtgagggccg actcatcggt cgctacctct cgccgtatgc
      361 cgacgccggc tggctgtccc tggccgaggt ccgcatgctc tcgaccatgg cgggacggcg
      421 ggctgcgcgg gtctgggcgc gcagctcggg gggacgtacc gctcttgccg cgatgcgcac
      481 cttccaggat gccgccagcg agctggccct gctgcgcgtc cggatgcacc acagcgcagc
      541 cgacgacggc gccgtgggca tggagcgcca gctcctcgac acgctcgccg cgagtcggca
      601 gggcttccac ggggcgtact agcgtgcggg ggtgcgcacc ctcgacctcg cccggaccat
      661 cggccccgag atcattgccc tgcgacgcac cctccaccag gttcccgagc tcgggctgca
      721 cctgcccctg acccaagaag cggtcctcgg cgccctcgcg gggctggagc tcgaggtcac
      781 gacgggtcgc gacctgtcat ccgtcgtggc cgtcctgcgc ggcggcgcag gccagtcgca
      841 gggatccggc gggagtggat ccggcaccgg cggtcgtccc gcagtgctgc tgcgcgccga
      901 catggatgcg ctgccggtcg ccgaggacct cgacgtggac tacgtgtccc tgcaccccgg
      961 cctgatgcac gcgtgtggcc acgaccttca cgttgcctcg ctcgtcggtg cggcgcggat
     1021 cctgcactcc ctgcgcgacc agctcgccgg cgatgtggtc ctcatgttcc agccggggga
     1081 ggagggcccc ggcggcgcca agccgatggt cgaggacggc gtcctggagg tggctgggag
     1141 gcgcgtggac gcggcatacg cgctgcatgt ctttgcgtcc gagtacccgc tgggcacctg
     1201 gttcggccgc tcgggtccgc tcatggcagc cgcagacgag gtcaaggtgc gggtgatcgg
     1261 ctcgggaggc cacggctctc agccgtttcg cgccaaggac cccatccccg tggcatgtga
     1321 gatcgtgctg gccctgcaga ccctcgtgac acgggggttc gacgtcttcg acccggtcgt
     1381 cgtcacggtc ggcaggttcg tcggcggcac caaggacaac atcatccccg acgacgtggt
     1441 gttcgaggcc accctgcgca gcctgtccga ggagtcacgg acggcggtga gctcacgcgt
     1501 cgagcgcctg gccaaaggga tcgcggaggc gcacggcctg accgccgagg tggagcaccg
     1561 tccgggatat cccgtcaccg tcaacgacgc cgccgagtac gcctttgcga gggcaacgat
     1621 cgaggacctg ttcggccagg gccgttacca gcaccagaag gatcccgaaa tgggctccga
     1681 ggacttctcc tttgtggcac aacaggttcc gagcgcctac gtcaacctca gtgcctgccc
     1741 agctgccgac tacgacgcag cgccggacaa ccattcggct cgggccgagt tcgacgactc
     1801 ggtcgtccct gacgccgcgg ccctgcttgc cgagctcgcc ctgcgtcggc tggagcagct
     1861 cagccggtga gggggacgcg ctagtgctcg aacacctcga ggcgcacgga ccgcgggcac
     1921 aggaccgcca cggctgcggc atacccgtcg acatgcaacg gcacgtcaat cagctgcacc
     1981 ggggaggcga gcgggcgctc gccgcgccat tcctccagcg cagcgtcctc gtccggcccc
     2041 gtgaccacga cctcgcgcgg gtcgacgacg agcccgtgcc cggtggcctt cagcaccgct
     2101 tccttgcgcg cccagacctg cgccctggcg gcgccgagac ggtatgccgc gacggcgccg
     2161 aaggctggct gctcgtcgag tgccagcgtc gacaggtcga aaccctcgtg gtcggcgtcc
     2221 tcgacctgtt cgacgtccac gcccgcctca ccggatccgg tgaccgcggc gagcgccagc
     2281 cgccccgcgt aggacaggga cacgtgcaga tcggggtggt cgcggaccac cggcttgcca
     2341 tgagcagtgc tgccacaggt cgcacagtgg cggtcgaagg cgacgtctcg gggcgcctgc
     2401 ccggttcgat cggcgacgac cctgcgcaac agagcgtggg ccgtgatgta gcgcatcggg
     2461 ttgctgcggc gcaggcttcg ctccagctct tgggcgtcga ggagctcggt cagggcgggg
     2521 tcgtcagaca ccgcgcgggc gtagacgctc accaccgcgg acacaccctg atcatgtcac
     2581 tgaggccgat gcccgcagcg tcctacactg tgcgagcgtt cgggcccttc cggtccgatg
     2641 cccccgtagc tcagctggat agagcaagag ccttctaatc tctaggtcgc aggttcgagt
     2701 cctgccgggg gcgccacaca ccgt
//
LOCUS       DASYFY010000440         4599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_819093, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000440 DASYFY010000000
VERSION     DASYFY010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4599
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_819093"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..322)
                     /locus_tag="VGN19_08790"
     CDS             complement(<1..322)
                     /locus_tag="VGN19_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HEV7196022.1"
                     /translation="MAPTVHPVVADVTARLRERSRASRAAYLHRLSRAASELSLRPAR
                     TDLGCSNLAHAVAACGGSDRDVMSADTGVSLGIVTSYNDMLSAHAPFEHYPASMKQTA
                     REVGA"
     gene            complement(484..1194)
                     /gene="pdxH"
                     /locus_tag="VGN19_08795"
     CDS             complement(484..1194)
                     /gene="pdxH"
                     /locus_tag="VGN19_08795"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HEV7196023.1"
                     /translation="MADERGGDAMRRDTMRTDYIGVGLSEAEVAPTPWLQAQRWVSEA
                     VERSHALPDVPEPLALSVATVDALGRPNIRTVLMRFFDERGPGFVTNTESTKGIEIAA
                     TGLVAASLTWPALYRAIRFRGSAQELDRDEVTTYFATRPWGSRISAWASRQSHPVSGR
                     AELEAAFERYAAQWPDHGTPEDVPVPEFWGGYRVLCDEVEFWGGRQNRLHDRLVFSRV
                     GLGSLDDPKSWALARRQP"
     gene            complement(1238..2515)
                     /locus_tag="VGN19_08800"
     CDS             complement(1238..2515)
                     /locus_tag="VGN19_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196024.1"
                     /translation="MPLLLDLTPLRTNAAYRRLYAGFALSNVGSQLAVVAIGLQVYEL
                     TRSTAAVGIVGLCALVPLVFMGLYGGTLIDHFDRRTVGLVAQSVAFLSSVLCATQAWL
                     GNTQVWVLYALVALWNGAYAVSSPARTSIYPRILERDQLPAANALSVFAMNSAMTVGP
                     LLAGVLVDWGGFRAAYTTDAVITTAALWGLARLQPLPPEPAAEGAAPSKPGLRSVLDG
                     FAFLATRPNVRMTFVADICAMLLAQPRVLFPAAGAVIFGGGAKTVGALSAAAAVGGIT
                     AMFFSGRLGHVRRQGRAILVSIVGWGAAISGFGVAMLAAGGTLSKGEALWAGLVAMAV
                     AGGSDSVSAVFRTTILQAATPDHLRGRLQGVFIVVVAGGPRLGELAGGFLASGIGEAL
                     TAVVGGLACILAIVVLARVQPGFLRYDARHPTP"
     gene            2554..3318
                     /locus_tag="VGN19_08805"
     CDS             2554..3318
                     /locus_tag="VGN19_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017834300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEV7196025.1"
                     /translation="MESKPRIALLIDADNSSAKKIDLILNELAGFGETTIRRAYGNWT
                     KPELKGWADVLHENAIRPMQQYDISRGKNASDIAMVVDAMAMLYTDQPDAFAVVSSDA
                     DFTPLVMHLREKGAAVYGFGDKKTPAPFQSACSRFLVLDQLATPDDDDKPSSDDAPQT
                     ARLRWTTAKLRQDAGLVKLLRNAVQGAADDEGWALVGTVGTHIANQSSFDSRNYGYSS
                     LSKLLAATDLFTMKDEGSPALAVRDKRRDSRDSRGR"
     gene            complement(3356..3937)
                     /locus_tag="VGN19_08810"
     CDS             complement(3356..3937)
                     /locus_tag="VGN19_08810"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEV7196026.1"
                     /translation="MLSAQTDYDAQVLTGDLSGQSGEGARFLECTFQRCDLSQVRLAR
                     ARFGDTGWYAVHGAAVDLAESTWLDCAVQGARLGAVQLYGAELRRVRFEGCKIEYLNL
                     RGATVVDCQLVDCQLVEPDFTEATLTRVSFAGSRLVAPDFTRSRLSEVDLSGAELIAP
                     RGVTGLRGATISGAQLFDLAPAFAAELGVVVAE"
     gene            4037..>4599
                     /locus_tag="VGN19_08815"
     CDS             4037..>4599
                     /locus_tag="VGN19_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HEV7196027.1"
                     /translation="MSDSDFKPGLEGVIAFESEIAEPDKEGGSLRYRGVDLKDLVGRV
                     SFGQVWGLLVDNEFDPGLPPAEPFPLPVHSGDIRVDVQSALAQLAPLWGFKPLLDIDA
                     EQARDDLARASVMALSFIAQSAHGQDSPMVPQREVDKGRTIVERFMIRWRGEPDPKHV
                     EAIDAYFISAAEHGMNASTFTARVIAST"
BASE COUNT          798 a         1641 c         1564 g          596 t
ORIGIN      
        1 ctgccccgac ctcgcgggcg gtctgcttca tcgaggccgg atagtgctcg aacggcgcat
       61 gcgccgagag catgtcgttg tatgaggtga cgattcccag gctcaccccg gtgtccgccg
      121 acatgacatc gcgatcggac ccaccacacg ccgcgacggc gtgcgccagg ttggaacagc
      181 cgaggtcggt gcgggccggg cgcaggctca gctcggaggc tgcgcgggaa aggcggtgga
      241 ggtatgccgc gcggctggct cggctgcgtt cgcgcagtcg ggcggtgacg tcggcaacga
      301 cggggtggac ggtgggcgcc atggggctcc tggacgtgcg gcggtcggga cgggggaccg
      361 cgcgaacggc gtcgctggcg tgcgcgttgt gattccgttc acaagtgtgg cgacgtccca
      421 gcattcggca acgcccgtcc cgccatacgg accggtagcc agtgggttgc gggcgcggac
      481 ctgctacggc tgacgccgag ccaacgccca cgacttcggg tcatccaagg accccagccc
      541 cacccggctg aacaccagcc ggtcgtgcag gcggttctgc cgcccacccc agaactcgac
      601 ctcgtcgcac agcacccggt agccgcccca gaactccggc acaggcacgt cctcgggggt
      661 cccgtggtcg ggccactgcg cggcataccg ctcgaaggcg gcctcgagct cggcgcgccc
      721 ggacacgggg tgggactgcc gcgacgccca ggccgagatc cgcgagcccc agggccgggt
      781 cgcgaagtag gtggtgacct cgtcgcggtc gagctcctgg gcagagccgc ggaaccggat
      841 ggcgcggtac aaggccggcc aggtcaacga agccgccacc agaccggtcg cagcgatctc
      901 aatccctttg gtggactcgg tattggtgac gaaaccgggt cctcgctcgt cgaagaagcg
      961 catcagcacg gttcggatgt tcggtcggcc gagggcgtcg accgtcgcca cggacagggc
     1021 gagcggctcc ggaacatcgg ggagggcgtg cgagcgctcg accgcctcgg agacccatcg
     1081 ctgggcctgc agccaggggg tgggggccac ctcggcttcc gagagcccca cgccgatgta
     1141 gtcagtgcgc atcgtgtccc tgcgcatcgc gtcccctccc cgctcgtcag ccatgcccca
     1201 gagactaagg gtcggccgaa tgtggccgca gtgccggtca gggcgtcggg tggcgcgcgt
     1261 cgtagcgcag gaatccgggc tgcacgcgcg caaggacaac gatggcgagg atgcacgcaa
     1321 ggccgcccac cacggcggtc agggcttcgc cgatgccgct ggccaggaag cccccagcga
     1381 gctcgccgag ccgaggtcca cccgccacga ccacgatgaa caccccttgg agccgaccgc
     1441 gcagatggtc tggggtggcg gcttgcagga tggtcgtgcg gaacacggcg ctgaccgagt
     1501 ccgagccccc ggccaccgcc atcgcgacga gaccggccca cagcgcctct cccttggaca
     1561 acgtgccgcc ggcggcgagc atcgccacgc cgaacccgct gatcgccgca ccccacccga
     1621 cgatcgagac gaggatcgcg cgcccctggc ggcggacgtg tcccagccgt ccggagaaga
     1681 acatcgcggt gatgccgccg acggccgcag ccgcgctcag cgccccgacc gtcttggcgc
     1741 cccctccgaa gatcaccgcg cccgcagcgg ggaacagcac cctcggctga gccagcagca
     1801 tcgcgcagat gtccgccacg aaggtcatcc gcacgttggg ccgcgtggcc aggaacgcga
     1861 agccgtcgag caccgagcga aggcctggct tgctgggtgc ggcaccctcc gcagcgggtt
     1921 cgggcggaag cggttgaagc cgtgcgagcc cccacagcgc cgcggtagtg atcacggcat
     1981 ccgtggtgta cgccgcccgg aagccgcccc agtcgacgag caccccagcc agcagcggcc
     2041 ccacggtcat cgccgagttc atcgcgaaca cggacagggc gttggccgcc ggcagctggt
     2101 cccgttccag gatccgcggg tagatcgagg tcctggccgg tgaggacacg gcatacgcgc
     2161 cgttccacaa cgccacgagc gcgtagagca cccacacctg ggtgttgcca agccaggcct
     2221 gggtggcgca caggacgctg gacaggaacg cgacgctctg ggcgaccagc cccacggtcc
     2281 ggcggtcgaa atggtcgatc agcgtcccgc cgtacagtcc catgaagacc aggggcacca
     2341 gcgcgcacag acccacgatg cctactgccg cagtcgatct cgtcagctcg tacacctgca
     2401 gtccgatggc taccaccgcg agctgcgacc ccacgttgga cagggcgaac cccgcataca
     2461 accgccggta tgccgcgttg gtccgcaacg gggtgaggtc gaggagcagc ggcacaaggg
     2521 cgaccctagg ccctgtcctt tacggtgagc cgcatggagt ccaagccgcg catcgccctg
     2581 ctcatcgacg cagacaactc gtcagccaag aagatcgacc tcatcctgaa cgagctcgcg
     2641 gggttcggcg agaccacgat ccggcgggcg tacggcaact ggaccaagcc ggagctcaag
     2701 ggttgggccg acgtcctgca cgagaacgcc atccgcccga tgcagcagta cgacatcagt
     2761 cgcggcaaga acgccagcga catcgcgatg gtcgtcgacg cgatggcgat gctctacacc
     2821 gaccagcccg acgcgttcgc cgtcgtctcc tccgatgcgg acttcacgcc gctggtcatg
     2881 catctgcgcg agaagggcgc cgcggtctac gggttcggcg acaagaagac gccggcgcca
     2941 ttccagagcg cctgctcacg gttcctcgtc ctggaccagc tggccacccc tgacgacgac
     3001 gacaagccgt cctccgacga cgcaccccag acggcccggc ttcggtggac gacggcgaag
     3061 ctgcggcagg acgcaggtct ggtgaagctg ctgcgcaacg cggtccaggg tgcggccgac
     3121 gacgaggggt gggccctggt cggcacggtc ggcacccaca tcgccaacca gtcgagcttc
     3181 gactcgcgca actacggcta ctcgagcctg agcaagctgc tcgcggcgac cgacctgttc
     3241 accatgaagg acgaggggtc gccggccctc gcggtgcgcg acaagcgccg ggacagccgg
     3301 gacagtaggg gccgctgacg ctcactcggc gacaacgctc actccgcgac aacgctcact
     3361 cggcgacgac gaccccgagc tctgcggcga aggccggggc gaggtcgaac agctgggcgc
     3421 ccgagatcgt ggcaccacgc agcccggtga ccccgcgggg ggcgatgagc tcggcgcccg
     3481 acaggtcgac ctcgctcaaa cgggagcggg tgaagtccgg cgcgacgagc cgagaccctg
     3541 cgaacgagac gcgggtgagg gtggcctcgg tgaagtccgg ctcgaccagc tggcagtcga
     3601 cgagctggca gtcgaccacg gtggccccac gcaggttgag gtactcgatc ttgcagccct
     3661 cgaaccgcac gcgccgcagc tcggcgccat agagctggac cgcgcccaac cgcgcgccct
     3721 gcacggcgca gtccaaccag gtcgactcgg cgaggtccac ggcagcgccg tgcacggcat
     3781 accacccggt gtcgccgaaa cgcgcccgcg ccagccggac ctgcgacaga tcgcaccgtt
     3841 ggaaggtgca ttccaggaac cgcgcgccct ccccggactg acccgaaagg tccccggtga
     3901 gcacctgcgc gtcgtagtcc gtctgggcgc tgagcacccg ccaatagtga cgtatcggcc
     3961 cgacagggca gaatgaactc tccagtagca ccacgggcac gagcccaacc tccacgacca
     4021 ggccgagagg acaccgatgt ccgacagcga cttcaagccc ggactcgagg gcgtcatcgc
     4081 cttcgaatca gagatcgccg aacccgacaa ggagggcggc tcgctgcgct accgcggcgt
     4141 ggacctcaag gacttggtcg gcagggtcag cttcgggcag gtctggggac tgttggtcga
     4201 caacgagttc gaccccggcc tgccgccagc cgagccgttc ccgctgccgg tgcactccgg
     4261 cgacatccgc gtcgacgtgc agtccgccct cgcccagctc gcgccgctgt gggggttcaa
     4321 gccgctgctt gacatcgacg ccgagcaggc ccgagacgac ttggcccgcg cgtcggtcat
     4381 ggccctgtcg ttcatcgccc agtccgccca cggccaggac tcgccgatgg tgccgcagcg
     4441 cgaggtcgac aagggcagga ccatcgtcga gcggttcatg atccgctggc gcggagagcc
     4501 cgaccccaag cacgtcgagg ccatcgacgc ctacttcatc tccgctgccg agcacggcat
     4561 gaatgcctcg accttcaccg cccgcgtcat cgcctcgac
//
LOCUS       DASYFY010000441         2811 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_977745, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000441 DASYFY010000000
VERSION     DASYFY010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2811
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977745"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..388)
                     /locus_tag="VGN19_08820"
     CDS             complement(89..388)
                     /locus_tag="VGN19_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013837894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEV7196028.1"
                     /translation="MAMTARLPQPLLESYEWQSKGACRDSAVGLFFDSDAHRGSRRAA
                     HEDAAKQVCRGCPVLVQCRAHGLACENYGIWGGLTAKERADLRVGSAGRDSAHAA"
     gene            complement(456..2150)
                     /locus_tag="VGN19_08825"
     CDS             complement(456..2150)
                     /locus_tag="VGN19_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013883082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 13 protein"
                     /protein_id="HEV7196029.1"
                     /translation="MDPVRPPDDDAPQAWWRHAVMYQVYPRSFADGNGDGEGDLPGLL
                     AKLPYLAGLGVDGIWISPWYPSPMADGGYDVSDFRGIHPMFGTLADADAVVSEAHALG
                     LRVITDLVPNHTSDEHPWFQAALAAPPGSPERAQSRARYFFRDGKGESGDQPPNNWIS
                     AFGGSAWTRVTEPDGTPGQWFLHSFAEEQPDLDWGNPEVLRDFDDILRFWFDRGIDGL
                     RIDAAPAMAKKEGLPDADYGGVLQFRTVDWVDNPHWDVDSVHDIFRRWRALADTYEGG
                     RVFVAEAVVNGAERLSHYLRPDEMHTAFNFPYLKSAWDPQVLRSVIDATLESFAPLGT
                     ASTWVLTSHDEIRPVTRYGRPTTSSAFITDGAGEVSDLALGTRRARAAALLMLALPGS
                     AYIYQGEELGLPNVDDLPDEVLQDPMFARSGGEMRGRDGCRVPMPWSGDHPPYGFSPD
                     GVSPWLPQPPDWGELTVDAEAADPGSMLSLYREALRLRRNTAGLHAAGLQWRQSAEGV
                     LDFDRGTALRCVVNLSGASVEVPADAVMLSSVPLEQGALPPDAVAWIAPGGEAAPR"
     gene            2418..2663
                     /locus_tag="VGN19_08830"
     CDS             2418..2663
                     /locus_tag="VGN19_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196030.1"
                     /translation="MSTPTVPRPTVGGDSDRGEESIRAELVAMLAVSIFPATVDELQA
                     SLIRRRAPARLMWHLSRLSPLRRYQSMSAVLADLDVH"
BASE COUNT          433 a         1001 c          940 g          437 t
ORIGIN      
        1 cttggccgcg agcgcgaacc aagcctgccg ttcggacagc gccgcgccgt tcggacagcg
       61 ccgcgccgtt cagacagcgc cgcgccgttc aggcagcgtg cgccgagtcg cgtccggcgg
      121 atccgacgcg caggtcggct cgttccttgg ccgtgaggcc gccccagatt ccgtagttct
      181 cgcaagccag cccgtgcgcg cggcactgca ccaggaccgg acaaccgcgg catacctgct
      241 tggcggcgtc ctcatgcgcg gcgcgtcgcg agcctcgatg agcgtcactg tcgaagaaga
      301 gccccaccgc agaatcacgg catgctcctt tgctctgcca ctcgtaggac tccagaagcg
      361 gttgcggaag tcgcgcggtc atcgccatgt ctggctcttg cccaccgcgg accccggaca
      421 aacgcctgac ttgcgcaccc gtcgtcggga cgagctcagc gaggcgctgc ctccccaccg
      481 ggagcgatcc aggccacggc atcaggcggc aacgcacctt gctcgagcgg gacgctgctc
      541 agcatcaccg catccgccgg gacttccaca gaggcgccgg agaggttcac gacgcagcgc
      601 agggcggtgc ctcggtcgaa gtccagcacc ccctcagcgg actgccgcca ttgcaggccg
      661 gccgcgtgca ggcctgcagt gttgcgacgc agccggaggg cctcgcggta cagggagagc
      721 atcgagccgg ggtcggctgc ctcggcgtcg acggtgagct cgccccagtc cggcggctgg
      781 ggcagccacg gcgagacgcc atccggtgag aagccgtacg gcgggtggtc cccactccac
      841 ggcatcggga cgcggcagcc gtcgcgtccg cgcatctcac cgccgctgcg cgcgaacatc
      901 gggtcctgca gcacctcgtc gggcaggtcg tcgacgttgg gcagccccag ctcctcaccc
      961 tggtagatgt aggcgctgcc gggcagcgcc agcatgagca gcgcggccgc gcgcgctcgt
     1021 ctcgttccca acgccaggtc cgagacctcc ccggccccgt cggtgatgaa cgccgagctg
     1081 gtggtcggcc gaccgtaccg ggtcaccggc cggatctcgt cgtgactggt caggacccag
     1141 gtcgaggccg ttcccagcgg tgcgaacgac tccaacgtcg cgtcgatcac cgatcgcagg
     1201 acctgggggt cccaggccga cttgaggtac gggaagttga aggcggtgtg catctcgtcg
     1261 ggacgcaggt agtggctgag tcgctcggca ccgttgacca ccgcctccgc cacgaagacc
     1321 cgaccgccct cgtaggtgtc ggccagcgct cgccaacgtc ggaagatgtc gtgcacgctg
     1381 tcgacgtccc agtgcgggtt gtcgacccag tccacggtcc ggaactgcag gactcccccg
     1441 tagtcggcgt cgggcagtcc ctccttcttg gccatggccg gggcggcgtc gatccgcagc
     1501 ccatcgatcc cccggtcgaa ccagaagcgc aggatgtcgt cgaagtcgcg aagcacctcc
     1561 gggttgcccc agtcgagatc cggctgctcc tcggcgaacg agtgcaggaa ccactgtccg
     1621 ggagttccat cgggctccgt cacccgggtc cacgccgaac cgccgaaggc gctgatccag
     1681 ttgttcggcg gctggtcccc ggactcccct ttgccgtcgc ggaagaagta ccgggcccga
     1741 gactgggccc gctcggggga tcctggcggg gccgccaacg cggcttggaa ccacgggtgc
     1801 tcgtcggagg tgtggttggg gaccaggtcg gtgatcactc gcaggcccag ggcgtgcgcc
     1861 tcgctgacga ccgcgtcggc gtccgccagg gtgccgaaca tcggatgtat gccgcggaag
     1921 tccgacacgt cgtacccacc gtcggccatc ggggacgggt accacgggga gatccagatg
     1981 ccgtcgacgc ccagccccgc caggtagggc agcttggcca ggagtccggg caggtccccc
     2041 tcaccatcac cgttcccatc ggcgaagctc cgcggataga cctggtacat caccgcatgt
     2101 cgccaccagg cctggggcgc gtcgtcgtct ggggggcgaa cagggtccat gggtcctcct
     2161 gcaggcgggg ccggccgccg cgtcgcggct cactcgaacg gtagtggagg ggaggtccac
     2221 cccgccctgg atcgtggtgg ttccggcggc gcagcgctca gcctctctgg cctctcatct
     2281 gcggatttgt ccatttgtag aacccttctt taccaattct tgaccaagtg cgaggttcta
     2341 taaagggtcc caacgggcaa gtgtccattc tgagggggtc gcgacttcgc accccggctg
     2401 accacaaggg gaaagtcatg tcgacgccca ccgttccgcg ccctacagtc ggcggcgact
     2461 ccgacagggg cgaggagtcc atccgcgccg agctcgtggc gatgctcgcg gtgagcatct
     2521 tcccggccac cgtcgacgag ctccaggcgt cgctgatccg ccggcgggct cccgcccgcc
     2581 tgatgtggca cctctcgcgc ctctcaccgc ttcgccggta ccagtcgatg tccgcggtgc
     2641 tggccgacct cgacgtccac tgaccacgcg ctgggctgct agctggtgat gtccttgccc
     2701 gagaaccgcg cccacgccaa caaccagaac accacggcat acccgaggtc gacgagcagt
     2761 ccctgagtca cgttgacggt ggctatcggg ctgcgcagca ggtccccgaa c
//
LOCUS       DASYFY010000442         5853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1608423, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000442 DASYFY010000000
VERSION     DASYFY010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5853
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1608423"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..2325
                     /locus_tag="VGN19_08835"
     CDS             55..2325
                     /locus_tag="VGN19_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-associated domain-containing protein"
                     /protein_id="HEV7196031.1"
                     /translation="MTATPRQADATAARSMADDIRGRSDDQLRDLLRRRQDLARPAPA
                     DVSSLAARASTRASVQRAVDALDLAHLQTLEAALATSSPVAVEAIAELLGAPATEVGP
                     LLDDLWTLALVWRSPQGLRVVRTVSEVLAQPAGLGASAADLPVDLPPQPELRALVDRA
                     PATARAILDRLTWGPPTAVLPPGAPDRVAQGASWLLEHHLVSGSGDHLQLPREVALVL
                     RGGRVHAHPALHPPALTGTERDREAVDSAAGQEVTDLLALLDELAADWGLRPPRVLRA
                     GGLAVRDLTRLASVLDVDRERAAFVVEVAYAAGLLADDGALEPSWAPTPAYDEWAQQP
                     GAARWAVVAQGWLESTRSPHLVGTSSPGGSGSVNALGPDAHWPPARALRRDVLGLLAE
                     TTPGVAVSAGVLAESLSWQRPRRTPAGLEAVVVALLREAQWLGVTGRGALSAAGRALL
                     SAQDDKALAAAMQPHLPEPIAHILLQADLTAIAPGPLEGGLATFLRLVADVESRGGAT
                     VYRFTPDTVRRALDAGWSVDQVLSGLGDASHTPIPQPLDYLIRDVARRHGQARVGSAR
                     AYVRCDDETTLSAMLADRTLSPLQLRSIAPTILMSPVAPDTVLEFLRENGFAPVAETP
                     DGGVVVPSAGRHRTPQQRRTPPARSHRVDDELVTTLVGALRAGEESAAYHREELARRP
                     GPVLGSTDPTTTLAVLRDAAADRQAVWLGYSDADGRVERMLFYPERVEGGRVHGTTEG
                     VARTLSIHRVTGAAPG"
     gene            complement(2327..3265)
                     /locus_tag="VGN19_08840"
     CDS             complement(2327..3265)
                     /locus_tag="VGN19_08840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HEV7196032.1"
                     /translation="MGLPQREADPALPPSVTIYEVGPRDGLQNEKSVVPTEVKVEFIR
                     RLAAAGLDTIETTSFVPPTWVPQLADAQAVLAGLGDLGLGARRPVLVPNERGLDDALA
                     AGVGAIAIFGSATETFARKNLNRTVAESVAMFAPVVARAQSAGLWVRAYVSMCFGDPW
                     EGPVPVEQVVDVAVRLMDLGADQLSLGDTIGVGTTGHVSRLLEALDARGVGVDRVGVH
                     FHDTYGQALANTMTALRHGVTVVDASTGGLGGCPYAKSATGNLATEDLVWALDGAGVQ
                     TGVDLAALVETSVWMAQQLGRPSPSRVVKALAGSEG"
     gene            3363..4085
                     /locus_tag="VGN19_08845"
     CDS             3363..4085
                     /locus_tag="VGN19_08845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196033.1"
                     /translation="MSETPRNEENPEFRDPTAPSEPEPSEVHPPGESSGADETTAIDT
                     SHTQAVPPPPPPPLAPPASPLAAPGEPQGNPYASPQPGAVPPGPPPQNPYGVPPAQAG
                     PLAAGPPPTGAQAGPPSPYAGPGYGQPGYGAPGYGPPAFGAPGYAPPGYAPPRSLSGN
                     TIALLIVSGLTTLGCGFGIVALIFAILAATHKDEPPASAKYTRWGWIALVAGFVLAVA
                     VLIIALIAFGLSATSTNYNSGA"
     gene            4090..5739
                     /locus_tag="VGN19_08850"
     CDS             4090..5739
                     /locus_tag="VGN19_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair helicase XPB"
                     /protein_id="HEV7196034.1"
                     /translation="MPDGPLIVQSDKTLLLEVDHPRAEEARRAIAPFAELERAPEHIH
                     TYRVTPLGLWNARAAGHDAEQVVNALITYSRYAVPHALLVDVADTMDRYGRLTLEKDA
                     EHGLVLRTTDRPVLEEVLRHRKIKPLLGARIDDDRVLVHPSERGHLKQELLKVGWPAE
                     DEAGYVDGEAHPIDLDNSTWSLRPYQQQAIDGFWHGGSGVVVLPCGAGKTLVGAGAMA
                     QAKATTLILVTNTVSARQWRDELLKRTSLTEEEIGEYSGARKEIRPVTIATYQVLTTR
                     RKGVYTHLDLLDARDWGLIVYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREA
                     DVFSLIGPKRFDAPWKDIEAQGYIAPADCVEVRVTLPDSERLAYAVSEPEDRYRLSSC
                     SPVKIPVVERIVARHRGEPTLVIGQYLDQLDELAHRLDADVITGETPVSQRQKLFQAF
                     RVGEIDLLVVSKVANFSIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPKGDGRTAHF
                     YTVVSRDTVDAEFAAHRQRFLAEQGYSYRIVDADELPSPAG"
BASE COUNT          880 a         2161 c         1987 g          825 t
ORIGIN      
        1 atacgatgga attgggctga gagtctgccg gtctggaggc actaccgtgg tgcagtgacc
       61 gccacccctc gtcaggccga cgcgaccgct gcgcgctcca tggctgatga catccgtggc
      121 aggtctgacg accagctacg cgacctgttg cggcgccgtc aggacctcgc gcgccctgcc
      181 ccggccgatg tttcctcact ggctgcccgt gcgagcacga gggccagcgt gcagcgggcg
      241 gtcgacgcgc tcgaccttgc gcacctccaa acgctcgagg cagctctcgc gaccagctct
      301 cccgtggcgg tcgaagcaat cgccgagctg ctcggtgctc ccgccactga ggtcggcccg
      361 ctcctcgacg acctgtggac cctcgcgctg gtgtggcgta gcccccaagg actgcgcgtg
      421 gtccgcacgg tcagcgaggt gttggcccaa cccgcgggcc tgggggcctc agccgccgac
      481 ctgccggtgg acctcccgcc gcaaccggag ctgcgcgcgc tggtcgacag ggccccggcg
      541 acggcgcgag cgatcctgga ccgcctgacc tggggaccgc ccactgccgt gctgccaccc
      601 ggcgctccgg accgagtcgc ccagggcgcc agttggctgt tggagcatca cctggtctcc
      661 ggctccggtg accacctgca gctcccccgc gaggtggcgt tggtcctgcg cggcggtcga
      721 gtgcatgcgc atccggccct gcatccgccg gccctcaccg gtaccgagcg cgaccgcgag
      781 gcggtcgact cggcggcggg ccaggaggtc accgacctgt tggcgttgct cgacgagctc
      841 gccgccgact ggggcctgcg cccgccgcgc gtgctgcggg cgggcggcct ggcagttcga
      901 gacctgaccc gcctcgcctc ggtactggat gtcgaccgcg agcgtgccgc gttcgtggtg
      961 gaggtcgcgt atgccgcggg cctgctcgcc gacgacggcg ccttggaacc ctcctgggct
     1021 cccacgccgg cttatgacga gtgggcgcag caaccgggcg ccgcccgctg ggcggtagtc
     1081 gcgcagggtt ggcttgaaag cacgagatct ccgcacctgg tgggcaccag cagccctggc
     1141 ggctccggca gcgtcaacgc cctcggcccg gacgcgcact ggccgcccgc ccgagcgttg
     1201 cgccgggatg tcctgggact gttggccgag accactcccg gcgtcgccgt ctcggccggc
     1261 gtcctcgccg agtcgctgag ctggcaacga ccacgacgaa cccccgcagg tctcgaggca
     1321 gtggtcgttg cgctgcttcg cgaagcccag tggctgggcg tcacagggcg cggcgcgctc
     1381 tccgcggcgg gacgagccct gctctcggct caggacgaca aggcgttggc cgcggccatg
     1441 caaccgcacc tgccggagcc catcgcccac atcctgctcc aggctgacct gaccgccatc
     1501 gcgcccgggc ccctggaagg tggcctggcg accttcctga ggctcgtggc cgacgtggag
     1561 tcgcgtgggg gcgcgacggt ctatcgcttc acccccgaca ccgtgcggcg cgccctggac
     1621 gccggatggt cggtcgacca ggtgctcagc ggcctcggcg acgcgagcca caccccgata
     1681 ccccagccgc tggactacct gatccgtgat gtggcacggc gccacgggca ggctcgggtg
     1741 ggttcggcgc gcgcctatgt ccgctgcgac gacgaaacga cgctgagcgc catgctggcc
     1801 gacaggacgc tgtcaccact gcagctacgc agcatcgcgc ccaccatcct gatgtcgccg
     1861 gtggcgcccg acacggtgct ggagttcctc cgcgagaacg gctttgcgcc cgttgccgag
     1921 actcctgacg gtggtgtcgt cgtgccgtcc gcaggacgcc accgcacgcc gcagcagcga
     1981 cgcaccccac ccgcccgtag ccaccgcgtc gacgacgagc tggtgaccac cttggtgggt
     2041 gcgctgcgcg ccggtgagga gtccgcggca taccaccgcg aagaactggc ccgtcgcccc
     2101 ggcccggtgc tggggagcac cgaccccacc accacgctgg ccgtcctgcg cgacgccgcc
     2161 gccgataggc aggccgtgtg gctggggtac tccgacgccg acgggcgcgt ggagcgaatg
     2221 ctcttctatc ccgagcgggt cgagggcgga cgagttcacg gaaccaccga gggagtcgca
     2281 cgcaccctgt cgatccatcg ggtgaccggg gcggccccgg gctgactcag ccctcggatc
     2341 cagcgagcgc tttgacgacc cgagacggcg acggccgccc cagctgctga gccatccaca
     2401 cgctggtctc cacaagtgca gccagatcca cgccggtctg gaccccggcg ccgtccaggg
     2461 cccacaccag atcctccgtg gcgaggttgc cggtcgcgct cttggcatag gggcacccgc
     2521 ccagaccgcc ggtcgaggca tccaccacag tcaccccgtg gcgcaaagcc gtcatggtgt
     2581 tggcgagcgc ctgcccgtag gtgtcgtgga aatgcacccc gacccggtcg acgcccaccc
     2641 ctcgggcatc caaagcctcc agcagccggc tgacgtggcc ggtggtgccc accccgatgg
     2701 tgtcgcccaa ggacagctgg tcagcgccga ggtccatcag ccgaaccgcc acgtcgacga
     2761 cctgctcaac gggaaccggc ccctcccaag gatccccgaa acacatggag acataggcgc
     2821 gaacccacag gcccgcagac tgcgcccggg ccacgactgg cgcgaacatc gccaccgact
     2881 cggcaacggt ccggttgagg ttcttgcggg caaaggtctc ggtggcactg ccgaagatgg
     2941 cgatcgcgcc gaccccggcc gcgagcgcgt cgtcgagccc ccgctcgttg gggaccaaca
     3001 cggggcggcg agcaccgagc ccgaggtcgc ccagcccggc cagcacagcc tgggcgtccg
     3061 cgagctgcgg cacccacgtc ggggggacga acgaggtggt ctcgatggtg tccaggccgg
     3121 cagccgccag ccgccggatg aactcgacct tcacctccgt ggggacgacg gacttctcgt
     3181 tctggaggcc gtcgcgcggg ccgacctcgt agatggtcac gcttgggggc agggcggggt
     3241 cggcctcccg ctgcggcagt ccgatggtca cgccctgata ctgccattgg ggcggtcgac
     3301 gctcgcagcc gcagcccgcg ggttagattt gcgggacgac acgtcccacg gaaggaccgg
     3361 cgatgagcga gaccccccgc aacgaggaga acccggagtt tcgcgacccc acggcgccct
     3421 ccgagccaga gcccagcgag gtgcacccgc ccggtgagtc gtcgggtgca gacgaaacca
     3481 ctgcgatcga cacctcgcac acccaggcag tcccgccgcc cccgccgccc ccgctggccc
     3541 ctcctgcgtc gccgctcgcg gcgcccggag agccccaggg caacccctat gcctccccgc
     3601 agccaggtgc cgtgccgccc ggaccgcctc cacagaaccc gtatggcgtt cccccggcgc
     3661 aggctggtcc tctcgcggct ggtcccccgc cgaccggtgc ccaggccggg ccgccgagtc
     3721 cgtacgcggg tcccggctac ggacagccgg gctatggggc gccggggtac gggccgccgg
     3781 ccttcggagc gccgggctat gcgccgccgg gctatgcacc gccgcgctcg ttgagcggca
     3841 acacgatcgc cctgctgatc gtctcgggtc tgaccacgct gggctgcggc ttcggcatcg
     3901 tcgcgctgat cttcgcgatc ctcgcggcaa cccacaaaga cgagccgccc gcatcggcca
     3961 agtacacccg ctggggatgg atcgccctcg tggcgggttt cgtcctggcc gtcgccgtcc
     4021 tgatcatcgc gctcatcgcc ttcggattgt cggcgaccag caccaactac aactcgggag
     4081 cctaagcctg tgccagacgg cccgctgatc gtccagagcg acaagaccct gctgctggag
     4141 gtcgaccacc ctcgcgccga ggaggcacgc cgggccatcg caccgtttgc cgagctcgag
     4201 cgagcgcccg agcacatcca cacctaccgg gtcacgccgt tggggctgtg gaacgcgcgg
     4261 gccgcggggc acgacgccga gcaggtcgtc aacgccctga tcacctatag ccggtatgcc
     4321 gtgccgcatg ccctgctcgt ggacgtggcc gacaccatgg accggtacgg ccgactcacc
     4381 ctcgagaagg acgccgaaca cgggctggtc ctgcggacga ctgatcgccc ggtgctcgaa
     4441 gaagtgttgc ggcacaggaa gatcaagccg ctgctggggg cccgcatcga cgacgaccgc
     4501 gtgctggtgc atccctctga gcgcggccac ctcaagcagg agctgctcaa ggtcggctgg
     4561 ccggcggagg acgaggcagg ctatgtcgac ggtgaggcgc accccatcga cctcgacaac
     4621 tcgacctggt cgctgcggcc ctaccagcag caggccatcg acgggttctg gcacggcggg
     4681 tcaggcgtgg tcgtgctgcc ctgcggcgcc ggcaagacgc tcgtcggcgc cggagcaatg
     4741 gcgcaggcca aggccaccac gctgatcctg gtcaccaata cggtctcggc ccggcagtgg
     4801 cgcgacgagc tgctcaagcg cacgtcgctg accgaggagg agatcggcga gtattcggga
     4861 gcgcgcaagg agatccggcc ggtcaccatc gcgacgtacc aggtgctgac cacccggcgg
     4921 aagggcgtgt acacccacct ggacctgctc gacgcgcgcg actggggcct gatcgtctac
     4981 gacgaggtgc acctgctgcc tgcgccgatc ttcaggatga cggcggacct ccaggctcgg
     5041 cggcgcctcg gcctcaccgc gaccctggtg cgcgaagacg gtcgcgaggc ggacgtgttc
     5101 tccctcatcg gcccgaagcg cttcgacgcc ccctggaagg acatcgaggc tcagggttac
     5161 atcgcgccgg cggactgcgt cgaggtccgg gtcacgctcc ccgactccga acgcctcgcg
     5221 tatgccgtgt ccgaaccgga ggaccgctac cgcctgtcgt cctgtagccc ggtgaagatc
     5281 cccgtggtcg agcggatcgt cgcccggcac cgcggtgagc ccactctggt catcgggcag
     5341 tacctcgacc agctggacga gctggcccat cgcctggacg ccgacgtcat caccggcgag
     5401 acgccggtat cccagcggca gaagctgttt caggccttcc gggtcggcga gatcgacctg
     5461 ttggtcgtct cgaaggtcgc gaacttctcg atcgacctgc cggaggcgag cgtggccatc
     5521 caggtctcgg ggaccttcgg gtcgcgccag gaggaagccc agcgtctcgg tcgggtgctg
     5581 cgccccaagg gggacgggcg aaccgcgcac ttctacacgg tcgtgtcccg ggacaccgtc
     5641 gacgccgagt tcgccgcgca ccgccagcgg ttcctcgcag agcagggcta ctcctaccgc
     5701 atcgtggacg ccgacgagct gccgtcaccg gctggatgag aaacacccag tcggcataca
     5761 ggacactctc aggatccggc acaacactga gaaggtgacc actgccctgc ccgaggcgcg
     5821 cctgctcgtc gtcgaagacg aacccaacat ccg
//
LOCUS       DASYFY010000443         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1188467, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000443 DASYFY010000000
VERSION     DASYFY010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188467"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VGN19_08855"
     CDS             <1..425
                     /locus_tag="VGN19_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEV7196035.1"
                     /translation="GEIVDFLGTAKVRREGTDATILSLGMMVPRALAAAETLAARGMN
                     VEVIDVRSLVPLDTQTILGSVAKTGRLFTVEENPQLLGWGAEIASLAADECFWDLDGP
                     IQRITTPHIPLPSADSLEDLVMPSEESVATTVEKALQS"
     gene            422..1588
                     /locus_tag="VGN19_08860"
     CDS             422..1588
                     /locus_tag="VGN19_08860"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEV7196036.1"
                     /translation="MTAGREGRVAVTMPQLGETVAEGTVLRWLKQVGDQVADQEPLLE
                     IATDKVDTEVLSPAGGVLDEIVIGEDETVDVGTVLAHLLPIGAATQPQSPPAAHPQVS
                     GTEQEPSRPTADSYVAGTSLRVEPPRTGPRHRHSPRVRRLAHQKGVDLFSIGGTGPGG
                     RVTPEDVIRATRSEVVTDPRSSLGGVVAETASARTFRTIVVEVDMPMRDRAASPDLAS
                     ADSDPGRQGLPGFVAPVVTALVGALRERPALLASSGRGGGVDLAVTWTTQGGSHSRLV
                     ANAGELNAAGVGQRMHERAAPNADLAKAHFALSFLLEDDVLLEVGEPPAGHVATVTFG
                     APTERVVVVEADGSPSIGIRRRAYVAVSYDPTAVGREVAVSLLRDLARRVASLS"
     gene            1621..>1869
                     /locus_tag="VGN19_08865"
     CDS             1621..>1869
                     /locus_tag="VGN19_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196037.1"
                     /translation="MTHHAHSHHVAYSTLVHPGDTWEEMRQSLETFAPQVKERVSPDD
                     AYAVSLRISGASAQTLTNDPEERRRLRRWLDEHDMYVYT"
BASE COUNT          313 a          665 c          600 g          291 t
ORIGIN      
        1 acggtgagat cgtcgacttc ctcggtaccg ccaaggtgcg cagagaaggg accgacgcga
       61 cgatcctctc ccttggcatg atggtgcccc gggctctggc cgccgccgag accctggcgg
      121 cccggggtat gaacgtcgag gtcatcgacg tccgctcgct ggtgcccctc gacactcaga
      181 ccatcctggg ctcggtggcg aagacgggca ggctctttac cgttgaggag aacccgcagc
      241 tgctcggttg gggcgctgag atcgcgtcgc tcgccgctga cgaatgcttc tgggacctcg
      301 acggcccgat ccagcggatc acgacgccac acattcccct accgtcggcc gactccctgg
      361 aagaccttgt catgccgtcc gaggagagcg tcgccacaac ggtcgagaaa gcgttgcagt
      421 cgtgaccgca ggacgggaag ggcgggtcgc cgtgaccatg ccccagctcg gcgaaactgt
      481 cgccgaggga accgtcctgc ggtggctgaa gcaggtgggc gaccaggtgg ccgaccagga
      541 gccactgctc gaaatcgcca ctgacaaggt ggacaccgag gtcctgtcgc cagccggtgg
      601 tgtcctcgac gagatcgtca tcggagagga cgagaccgtc gacgtcggca cagtgctcgc
      661 ccacctgtta cccatcggcg ccgccaccca gccccagtcc cctcccgccg cccacccaca
      721 ggtatccggc acagagcagg agccctcaag acccaccgcc gactcttacg tggcaggcac
      781 gtcgctccgc gttgagcccc ctcggacagg cccacgtcat cgccactccc cacgtgtgcg
      841 acggctggcg caccagaagg gggtggacct cttctcgatc ggcggcacgg gccccggcgg
      901 gcgggtcacg ccggaggatg tcatccgtgc gaccagatcc gaagtcgtca ctgacccgcg
      961 aagctccttg ggcggcgttg tcgccgaaac ggcgtcagca cgcacgttcc ggacgatcgt
     1021 cgtcgaggtc gacatgccca tgcgggatcg ggccgcgtcc cccgacttag catccgctga
     1081 ctccgaccca ggacggcaag ggctcccagg attcgtggct cccgtcgtca ccgccctcgt
     1141 cggcgccctc cgcgagcgcc cagccctgct cgcctcaagt ggtcgcggtg ggggagtgga
     1201 cctcgcagtc acctggacaa cgcagggcgg tagccactct cgcctggttg ccaacgccgg
     1261 cgagctcaac gccgcgggag tcggtcagcg gatgcacgag cgggcagcgc ccaatgccga
     1321 cctggcgaag gctcacttcg cactgtcctt cctcctggag gacgacgttc tcctcgaggt
     1381 cggtgagcca cccgcgggcc acgttgccac ggtgaccttc ggagccccca ctgaacgcgt
     1441 cgtcgtcgtt gaggcggacg gctcacccag catcggcatc cgccgcaggg cctacgtcgc
     1501 cgtcagctac gacccgaccg ccgtcgggcg agaagtcgcg gtgagcctgc tgcgcgacct
     1561 ggctcgtcgg gtcgcctctc tctcgtaggt gtttggaccc caacggactg tggagaactc
     1621 atgacccacc acgcgcattc ccatcacgtc gcgtactcga cgctggtcca cccgggcgac
     1681 acctgggagg agatgcgtca gagtctcgaa acctttgcgc ctcaggtgaa ggagcgcgtc
     1741 tcacctgacg acgcgtatgc cgtatcgctg cggatctccg gggcctcggc acagaccctc
     1801 acgaacgacc cggaggagcg caggcgtcta cgtcgctggc tcgacgagca cgacatgtac
     1861 gtctacacg
//
LOCUS       DASYFY010000444         9024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1347142, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000444 DASYFY010000000
VERSION     DASYFY010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9024
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347142"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VGN19_08870"
     CDS             complement(<1..222)
                     /locus_tag="VGN19_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEV7196038.1"
                     /translation="MSAAAELVDDDFVRVCRVDELPEVGVAAADINGTIVAIVHTENG
                     DIHAVDDTCSHANVSLSEGELDGCTLECWL"
     gene            complement(219..1415)
                     /gene="sufD"
                     /locus_tag="VGN19_08875"
     CDS             complement(219..1415)
                     /gene="sufD"
                     /locus_tag="VGN19_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEV7196039.1"
                     /translation="MSLLAQKNPTAGEHVDSAAAFVPDQSRAERKTSYAVDDFAVPGG
                     REEEWRFSPVDRLSALFHLAPSDADKVTVEVHAPAGVTTSRVDPREAGVLVPADRAAA
                     VAWAGEEQATKVSIPAEAELTEPVRITITARDLARINGHLVIDAGHHSKATVVLSHRG
                     SAECGANVELKVGDGADLTFVTVQEWDDDALHLTQNDALIGRDARLRHIAVTLGGKVV
                     RVSTNARYSGPGGSFEGLGVYFADAGQHQEHRLFVDHEAPHCHSNVEYKGALQGESAH
                     TVWVGDVLIRASAEGTDTYELNRNLVLTDGARADSIPNLEIETGEIVGAGHASATGRF
                     DDEQLFYLQARGIPEEVARRLVVRGFFASIVARIGVPEVSEHLMAAIDAELQGVGIDA
                     PAEDVA"
     gene            complement(1415..2836)
                     /gene="sufB"
                     /locus_tag="VGN19_08880"
     CDS             complement(1415..2836)
                     /gene="sufB"
                     /locus_tag="VGN19_08880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEV7196040.1"
                     /translation="MSTHIEELNPGLKDLGRYEYGWADSDTAGATAKRGLNEDVVRDI
                     SSRKNEPQWMLDLRLKSLRLFGKKPMPNWGSDLTGIDFQNIKYFVKSTEKQATTWDEL
                     PADIKNTYDRLGIPEAEKQRLIGGVAAQYESEVVYHQIREDLEEKGVIFVDTDTGLRE
                     HEDLFREYFASVIPAGDNKFAALNTAVWSGGSFIYVPPGVHIDIPLQAYFRINTENMG
                     QFERTLIIADEGSYVHYVEGCTAPIYKSDSLHSAVVEIIVKKNARVRYTTIQNWSNNV
                     YNLVTKRATAAEGATMEWIDGNIGSKVTMKYPAVFLLGEHARGETLSIAFAGEGQHQD
                     AGAKMVHAAPHTSSTIVSKSVARGGGRTSYRGLVQILEGAHGSRSNVVCDALLVDTIS
                     RSDTYPYVDIREDDVTMGHEATVSKVSEDQLFYLRSRGMTEEEAMAMIVRGFVEPIAR
                     ELPMEYALELNRLIELQMEGAVG"
     gene            complement(2833..3606)
                     /locus_tag="VGN19_08885"
     CDS             complement(2833..3606)
                     /locus_tag="VGN19_08885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196041.1"
                     /translation="MNIAEAPPVLESRTRDRVLHAISERGPITAAALAEELGFTPTAV
                     RRHLENLVEDHLIVERELAHGHRGRGRPARAYVLSEAGHQALESDYDHLATQALRFLA
                     EEAGPGAVRRFAEARVGELEQRYAAELAAAGTDTPARVDALVAALTRDGFAASARPMG
                     EASSPGPLTGIQLCQGHCPVQHAAREFPAFCDAETDAFSRLLGVHVQRLATLAHGDHV
                     CTTFVPTPSGTTSATQNSASNSTAHPTVVPTPSKEGSTR"
     gene            complement(3662..6592)
                     /locus_tag="VGN19_08890"
     CDS             complement(3662..6592)
                     /locus_tag="VGN19_08890"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7196042.1"
                     /translation="MGQQGAAQARMVGRDAELARLAELLGLNGEAGSGLVLLAGDAGI
                     GKTRLLTEAASLARDTGWRVLVGHCLGEAGRSLPYLPFSEMLGRLEAADPPEIERILT
                     AHPQVAGLFPGRRRPTDPRDLRVLDNVDRADLVAATHAAFEDLAAQEPLLLVVEDVHW
                     ADESSRDLLTLLFTRGFAGRVSVVASYRSDDLHRRHPLRETLAHWSRLAELRRIELDP
                     LTDDAVRELVTTGQPNALTHHQVETVVVRAEGNAFFAEELVVASTMARSGAAGDLSRL
                     LLVRFDHLGSAGQHVVRMASAAGRHVSHVLLARVAGLSDAELDEGLRDAVEHHILVST
                     ESGGYAFRHALLAETVYDDLLPGERVRAHARYAAVLTTDPTLGGWADLARHASAAGNT
                     ALALSASVHAGDDALSVGGPQEAWQHYQRALALISDNDPDADQVVLRAAAAATAKGQA
                     LKGVELIDDRLARRAPDADLGGKAELLAALATTARLTEKSVDTLELTRSGLALVEGSQ
                     RDYPHARARLLAARVQAFADRGRDPEALRAVDEAVTAAEAAGLPDVADEVRVVAARVL
                     ERAGDPDTSRATLERIIAQTRAVGDVAQVRAFHHLGSLHHRSGRLDHAVEVYLAGAEA
                     GRSAGRMWAPYAFDCRLLAAIAAYEGGRWDDARRILDVGGLVPPQPAAALILAAGLYV
                     TAGRGEDGWRDQLAEIRPWWDADGLAAVLAGSAAIDLHGQAGDLDAVVASHDEVVAEL
                     SRIWQPHFQAQLRISAVFLGQLASHLQRTPSAARARLLARGRAATEAGEQSWELASPR
                     GEGGLESSAWAARLRAEDLRLRWLGGEPVDGQELVRLWDGAVAGFDAYGHRYEAARSR
                     VRLAAALKAVGDPRVGATLRAALDVARELGSEPLKAEIRGVGGLPSGAARPAHRRGEG
                     LTAREQEILVLVALGRSNRQIGTQLFISAKTASVHVSNILAKLGAAGRGEAVAVAREQ
                     GLLD"
     gene            complement(6622..6828)
                     /locus_tag="VGN19_08895"
     CDS             complement(6622..6828)
                     /locus_tag="VGN19_08895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196043.1"
                     /translation="MSITSDPLFVAAEAQWRRERLTTAYQAPGAEGDDVLAPRPGHPL
                     RRLLVRRLPHRHERRDSAAAARAA"
     gene            6970..7680
                     /locus_tag="VGN19_08900"
     CDS             6970..7680
                     /locus_tag="VGN19_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7196044.1"
                     /translation="MPPAVAVTGLVKRYGDVLALDGATWSASSGQVTAVLGPNGAGKT
                     TMIECCEGLRHPDGGNVQVLGSDPWRAGAQHRARVGVMLQDGGLPNSARPMRLLRHVA
                     AMYADPAPVDELADRLGIVQFAGTSVRRLSGGQRQRVAVAAALVGRPEVVFLDEPSAG
                     LDPHARLDVWDLVRSTATAGSAVVITTHSFEEAERLADHIVVVAAGQVVAEGTLAEVA
                     GDGRLEDRYFDLTRRGVA"
     gene            7677..8507
                     /locus_tag="VGN19_08905"
     CDS             7677..8507
                     /locus_tag="VGN19_08905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196045.1"
                     /translation="MSAIPGDIPGEVPGNTSAARLGPAAGQGSPQPATGLRRVLAQAR
                     FETETLLRNGEQLLVAVLLPVAVLVAVVHTSAISIGTGRRVDLAVPGVLALCVISSAF
                     TGQAISTGFDRRYGVLRLLGVTPLGRTGLLLGKAIAVLAVVAVQFVVIGAVGAALGWA
                     PVAAGAAPAVVSTLLGTWAFVALALLLGGTVRAEGVLALANLVWLALLGIGGVIVSGT
                     ELPGTFAPIVELLPSGALGDSLRGALVSGQARLGDWLVLIVWALVATLLARRFFQWSD
                     "
     gene            8561..>9024
                     /locus_tag="VGN19_08910"
     CDS             8561..>9024
                     /locus_tag="VGN19_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEV7196046.1"
                     /translation="MTAAPARPLAGPVVETGATWLPRVLMANLVVEVLIVVTGGLVRL
                     TGSGLGCPTWPQCVPGSYIPVAHQAQGWHRYIEFGNRTLTSVVSIAAIATVYAVWRWT
                     GRRRDLMVPAWVVLGGVATQAILGGITVRTGLSPITVSAHFLVSMCLVAASA"
BASE COUNT         1253 a         3173 c         3175 g         1423 t
ORIGIN      
        1 cagccagcac tccagcgtgc acccgtcgag ctcgccctcg gacagcgaga cgttggcatg
       61 gctgcacgtg tcgtcgacag cgtggatgtc gccgttctcg gtgtgcacga tggcaacgat
      121 cgtgccgttg atgtcggccg ccgcgacgcc cacctcgggc agctcatcta cgcgacagac
      181 ccgcacgaag tcgtcgtcca ccagctcggc agctgcgctc acgcgacgtc ctcggccggt
      241 gcgtcgatcc cgacgccctg cagctcggcg tcgatcgccg ccataaggtg ctcggagacc
      301 tccgggacgc cgatgcgcgc cacgatgctg gcgaagaacc cgcgtaccac gaggcgacgg
      361 gcaacctcct cgggtatgcc gcgggcctgc aggtagaaga gctgttcgtc gtcgaagcgg
      421 ccggtcgccg aggcgtggcc ggcaccgacg atctcgccgg tctcgatctc gaggttggga
      481 atcgagtccg cccgcgcgcc gtcggtgagg acgaggttgc ggttgagctc gtaggtgtcg
      541 gtgccttcgg ccgaggcgcg gatgagcacg tcgcccaccc agaccgtgtg cgcgctctcg
      601 ccctgcaggg cgcccttgta ctcgacgttg gagtgacagt gcggcgcctc gtggtcgacg
      661 aagaggcggt gctcctggtg ctggccggcg tccgcgaagt agacgccgag gccctcgaag
      721 gagccacccg gaccggagta gcgcgcgttc gtcgagaccc ggacgacctt gccgccgagc
      781 gtgacggcga tgtgccgcag gcgggcgtcg cgaccgatga gcgcgtcgtt ctgggtcagg
      841 tgcagggcgt cgtcgtccca ttcctggacc gtgacaaacg tgaggtcggc gccgtcgccg
      901 accttgagct cgacgttggc gccgcactca gccgagccac gatgcgacag caccacggtt
      961 gctttggagt ggtgtcccgc gtcgatgacc aggtgaccgt tgatccgggc caggtcccgt
     1021 gcggtgatgg tgatccgcac cggctcggtg agctcggcct cggccgggat gctcaccttg
     1081 gtggcctgct cctcgccggc ccacgccacg gcggccgcgc ggtctgcggg cacgagtacg
     1141 ccggcctccc tcgggtcgac ccgggaggtc gtgacgccgg ctggtgcgtg cacctcgacg
     1201 gtgaccttgt cggcgtcgct cggcgcgagg tggaacagcg cggacagccg gtcgaccggg
     1261 ctgaaccgcc actcctcctc gcggccaccg gggacggcga agtcgtccac ggcatacgag
     1321 gtcttgcgct cggcgcgcga ctggtcgggg acaaaggcag cggcggagtc gacgtgctcg
     1381 ccagcggtgg ggttcttctg ggccagaagg ctcatcagcc gaccgctcct tccatctgca
     1441 gctcgatgag gcggttgagc tcgagggcgt actccatggg cagctcccgc gcgatgggct
     1501 cgacgaaccc gcgcacgatc atcgccatgg cctcttcctc ggtcatgccg cgggacctga
     1561 gatagaacag ctggtcctcg gacaccttgg acaccgtcgc ctcgtggccc atggtgacgt
     1621 cgtcctcgcg gatgtcgacg taggggtagg tgtcggaacg gctgatggtg tcgaccagca
     1681 gcgcgtcgca gaccacgttc gacctggaac cgtgggcgcc ctcgaggatc tggaccagac
     1741 cgcgatagga cgtgcggccg cccccgcggg ccacggactt cgacacgatg gtcgagctcg
     1801 tgtgcggcgc ggcgtgcacc atcttggcgc ccgcgtcctg gtgctggccc tcgcccgcga
     1861 acgcgatgga cagcgtctcg cctcgggcgt gctcgccgag caggaagacg gccgggtact
     1921 tcatggtgac cttggacccg atgttgccgt cgatccactc catcgtcgcg ccctcggcag
     1981 ccgtggcccg cttggtgacg aggttgtaga cgttgttgga ccagttctgg atggtcgtgt
     2041 aacggacccg cgcgttcttc ttcacgatga tctcgacgac cgcggagtgc agcgagtcgg
     2101 acttgtagat cggcgcggtg cagccctcga cgtagtgcac gtacgagccc tcgtccgcga
     2161 tgatcagggt gcgctcgaac tggcccatgt tctcggtgtt gatccggaag taggcctgca
     2221 gggggatgtc gatgtgcacg cccggcggga cgtagatgaa cgagccaccc gaccacaccg
     2281 ccgtgttgag cgcggcgaac ttgttgtccc cagcggggat gacgctcgcg aagtactcgc
     2341 ggaacaggtc ctcgtgctcg cgcagaccgg tgtcggtgtc gacgaagatg acgcccttct
     2401 cctccaggtc ctcgcggatc tggtggtaga cgacctccga ctcgtactgt gccgcgacgc
     2461 caccgatgag gcgctgcttc tccgcctcgg ggatgcccag gcggtcgtac gtgttcttga
     2521 tgtcggccgg aagctcgtcc caggtggtcg cctgcttctc ggtggacttc acgaagtact
     2581 tgatgttctg gaagtcgata ccggtcaggt cgctgcccca gttcggcatc ggcttcttgc
     2641 cgaacagccg cagggacttc aggcgcaggt cgagcatcca ctggggctcg ttcttgcgcg
     2701 aggagatgtc acgcacgacg tcctcgttga ggccacgctt ggccgtggcg ccagcggtgt
     2761 cgctgtccgc ccagccgtac tcgtagcgcc cgaggtcctt cagacctggg ttcagctcct
     2821 cgatgtgggt gctcatcgcg tggacccttc cttcgatggg gtggggacaa cagtggggtg
     2881 ggctgtcgag ttggatgcgg agttctgcgt ggcgctggtg gtgccgctcg gcgtggggac
     2941 gaacgtcgtg cagacgtggt ctccgtgagc cagcgtcgcc aggcgctgga cgtgcactcc
     3001 gagcaaccgc gagaacgcgt cagtttcagc gtcacagaac gcgggaaatt cccgggccgc
     3061 gtgctgcacg gggcaatgcc cctgacaaag ctgtatgccg gtcagtggcc cggggctact
     3121 ggcctcaccc atcggacgcg cagacgcggc gaacccgtca cgggtcaggg cggccaccag
     3181 agcatccacg cgggcgggag tgtcggtgcc agccgccgcc agctccgcgg cataccgctg
     3241 ctcgagctca ccgacgcgag cctcggcgaa gcggcgcacc gctccggggc cggcctcctc
     3301 ggcgaggaag cgcagtgcct gcgtggccag gtggtcgtag tcggactcga gcgcttggtg
     3361 gcccgcctcg ctgagcacgt aggcgcgggc cggacgaccg cggccacggt gcccgtgggc
     3421 cagctcgcgc tccacgatca gatggtcctc gacgaggttc tcgagatggc gacgaaccgc
     3481 cgtcggggtg aagccgagct cctcagccag ggccgcagcg gtgatggggc cccgctcgct
     3541 gatggcatgc aggacccggt cgcgggtgcg cgactccagg accggcggtg cctcagcgat
     3601 attcacaacg ccaatgttac gtaattagcg accgaagggg aaaggaaggt ccgcctaacc
     3661 ctcagtcgag gaggccttgc tcacgcgcca ccgccacggc ctctccccgg ccggctgcac
     3721 ccagcttggc caggatgttc gagacatgca cgctggccgt cttggcgctg atgaacagct
     3781 gcgtgccgat ctggcggttg ctgcggccca gggccacgag caccaggatc tcctgctccc
     3841 gggcggtgag cccctcacct cggcggtggg cgggccgggc agcaccggac ggcaggccgc
     3901 caacacctcg gatctcggcc ttcagcggct ccgatccgag ctcgcgggcc acgtccaggg
     3961 cagctcggag cgtggcaccc acccgcgggt cacccacggc cttgagcgct gcggccagcc
     4021 ggacgcggga ccgggcggcc tcgtaacggt ggccgtaggc gtcgaaccct gccacggccc
     4081 catcccacag ccggaccagt tcctggccat ccacgggttc tcccccgagc caacgcaggc
     4141 gcaggtcctc agcccgcagc cgggccgccc aggcgctcga ctccagaccg ccttcacctc
     4201 gcggggaggc gagctcccac gactgctccc ccgcctccgt ggccgcgcga ccccgcgcca
     4261 gcaggcgggc ccgtgcggcg gacggcgtcc gctgcagatg cgaggcaagc tgccccagga
     4321 agactgcgct gatccgcagc tgcgcctgga agtgcggctg ccagatccgg ctgagctccg
     4381 cgacgacctc gtcgtgcgac gcgacgacgg catcgaggtc gcccgcctgg ccatgcaggt
     4441 cgatcgccgc actgccggca aggaccgcag ccagtccgtc ggcgtcccac cagggacgga
     4501 tctcggcgag ctggtcgcgc cacccgtcct ccccgcgacc ggccgtgaca tacaggccgg
     4561 cggccaggat cagggccgcc gccggttggg gcggaaccag tcccccgacg tccaggatcc
     4621 ggcgcgcgtc gtcccaccgc ccgccctcgt acgccgcgat cgccgccaga agccggcagt
     4681 cgaaggcgta cggcgcccac atccgccccg cgctgcggcc agcctcggcg cccgcgaggt
     4741 agacctcgac cgcatggtcc agacgacccg agcgatgatg cagggagccc agatggtgga
     4801 aggcccggac ctgagcgacg tcgccgacgg cccgcgtctg ggcgatgatc cgctcgaggg
     4861 tggctcgact ggtgtcgggg tcgccggcgc gttccaggac gcgggccgcg accacccgga
     4921 cctcgtcggc gacgtcggga agacccgcgg cctccgcagc ggtcaccgcc tcgtcgacgg
     4981 cccgcagggc ctccgggtca cggcctcggt cggcgaacgc ttgaaccctc gccgccagca
     5041 gccgtgccct cgcgtggggg tagtcccgct ggctgccctc caccagggcg agcccggagc
     5101 gggtcagctc gagggtgtcg acggacttct cggtgaggcg cgcggtcgta gccagagcgg
     5161 ccagcagctc ggccttcccc ccgaggtcgg cgtcgggggc ccgccgggcg agccggtcgt
     5221 cgatgagctc cacgcccttg agggcctgcc ccttggcagt cgctgcggct gcggcccgca
     5281 gcaccacctg gtccgcgtcc gggtcattgt cactgatgag agcaagcgca cgctggtagt
     5341 gctgccaggc ctcctgtggg cctcccaccg acagggcgtc gtcgcccgca tgcacgctcg
     5401 ccgacagcgc cagggcggta ttaccggcgg cggaggcgtg ccgagcgagg tcggcccacc
     5461 cacccagcgt gggatccgtc gtcaggaccg cggcataccg ggcatgggct ctgactcgct
     5521 ccccggggag caggtcgtcg tagacggtct ccgccagcaa cgcgtgccgg aaggcgtagc
     5581 caccggactc ggtggagacc aggatgtggt gctcgacggc gtcccgcagg ccttcgtcga
     5641 gctctgcgtc actgagtccg gcgacccggg cgagcaagac gtgcgagacg tgtcggccgg
     5701 ccgccgaggc catccggacc acatgctggc ccgcgctgcc gaggtggtcg aaacggacga
     5761 gcaggagccg ggacaggtcc ccggcggctc ccgagcgagc catggtgctt gccacgacga
     5821 gctcctcggc gaagaacgcg ttgccctcgg ctcgcaccac gaccgtctcc acctggtgat
     5881 gggtgagcgc gttcggctgc cccgtggtga cgagctcccg aacggcatcg tcggtcaagg
     5941 ggtccagctc aatccgccgc agctccgcca gccgcgacca gtgcgcgagg gtctcgcgca
     6001 acgggtgacg acgatggagg tcgtcgctgc gatacgaggc cacgacgctg acgcgccccg
     6061 cgaagccgcg ggtgaacaac agcgtcagca ggtcgcgcga ggactcgtcg gcccagtgca
     6121 cgtcttcgac caccagcagc agcggctcct gggcggccag atcctcgaac gccgcgtggg
     6181 tcgcggcgac caggtccgcg cggtcgacgt tgtcgagcac ccgcaggtcg cgggggtcag
     6241 tcggtcgtct ccggccaggg aagagtcccg ccacctgagg atgcgcggtg aggatgcgct
     6301 cgatctcggg tgggtccgcg gcctccaggc gcccaagcat ctcgctgaac ggtaggtacg
     6361 gcagcgatcg cccggcctcg ccgaggcaat gcccgacgag cacccgccag ccggtatcgc
     6421 gggccagcga ggcggcctcc gtcaggagac gcgtcttgcc gatccccgca tcgcccgcga
     6481 gcagcaccaa ccccgacccg gcctcgccgt tgagccccaa gagctcggcg agccgggcga
     6541 gctcggcgtc acgcccgacc atccgcgcct gcgcggcacc ctgttgaccc acgtcctcga
     6601 ttatgtcgaa agcgtccgac gtcacgccgc gcgtgccgca gcggccgagt cacggcgttc
     6661 atgacggtgc ggcaaccgcc ggacgaggag ccggcgcagc gggtgtccgg gccgcggggc
     6721 cagcacgtcg tcgccttccg cgccgggggc ctggtaggcc gtcgtcagtc gttcgcgacg
     6781 ccactgggct tcggcggcga cgaacagggg gtcagaggtg atgctcatgt cagctcctat
     6841 gtggtgatct cgatgcgtca acattcggcg tctgaggtgg gccgacacat ggggcggatg
     6901 cctaatctgc gtggcccgtc ccgcagaggc gccttagtcg cccctgggag cgccacctag
     6961 actcgtgacg tgccaccagc tgttgccgtg accggccttg tgaagcgtta cggcgacgtt
     7021 ctcgcccttg acggagcgac ctggtcggcc tcctcggggc aggtcaccgc ggtgctcgga
     7081 ccgaacggcg ccggcaagac gaccatgatc gaatgttgcg agggcctgcg gcaccccgac
     7141 ggcggcaacg ttcaggtcct cggctcggac ccgtggcgag ccggtgctca gcaccgggcc
     7201 cgggtcggcg tgatgctcca ggacggcggc ctgcccaact ctgcgcggcc gatgcgcctc
     7261 cttcgccacg tggccgcgat gtatgccgat cccgcgccgg tggacgagct ggctgaccgc
     7321 ctcgggatcg tccagttcgc cggcacctcg gtgcgccgac tctcgggtgg acagcggcag
     7381 cgggtcgcgg tcgcggctgc cctggtgggc aggccggagg tcgtcttcct ggacgagccg
     7441 agcgcaggtc ttgatccgca cgcccgcctc gacgtctggg acctcgtgcg ctccaccgcg
     7501 acagcgggca gcgcggtggt catcaccacc cactcgttcg aggaggctga gcggctggcc
     7561 gaccacatcg tcgtggtggc ggcagggcag gtcgtcgccg aaggcacgct ggccgaggtc
     7621 gccggtgacg ggcgactcga ggaccgctac ttcgacctga cccgaagggg ggtcgcgtga
     7681 gcgccatccc cggcgacatc cccggcgagg ttccgggcaa cacgtccgcc gctcggctgg
     7741 gcccagctgc tggccaggga tctccccagc cggcgacggg tctgcgacgc gtcctggccc
     7801 aggcccggtt cgagacggag accctgctgc gcaacgggga gcagctcctg gtcgcagtgc
     7861 ttctgccggt ggccgtcctc gtagccgtcg tccacacctc cgcgatctcg atcgggacgg
     7921 ggcgccgcgt cgacctcgct gtccccggcg tcctcgccct ctgtgtcatc tcgtcggcct
     7981 tcaccggaca ggcgatctcc accggtttcg accgccgcta cggcgtactg cggctgctcg
     8041 gcgtcacccc gctgggtcgc accggcctgc tgctgggcaa agccattgcc gtgctcgccg
     8101 tggtggccgt gcagttcgtc gtcatcggcg ccgtcggtgc tgcactcggt tgggcgccgg
     8161 tcgcagcggg tgcggctccc gccgtcgtct cgacgctgct gggcacctgg gcgttcgtcg
     8221 cgctcgccct gctgctcggc ggcaccgtgc gtgcagaggg cgtgctggcc ctcgccaacc
     8281 tcgtgtggct ggccctgctc gggatcggag gcgtcatcgt ctcgggcact gagctgccgg
     8341 gaacgttcgc cccgatcgtg gagctgctgc cctcgggggc cctcggcgac agcctgcggg
     8401 gtgccctggt ctccggccag gcgcggctcg gtgactggct cgttctgatc gtctgggcgc
     8461 tggtcgccac ccttctggca cgacggttct tccagtggag cgactgacga ttcgcagggc
     8521 gacgaccgtc ccctcgaatc tcccacgtac cctcgatccc gtgaccgcag cacccgcccg
     8581 tcccctggcc ggccccgttg tcgaaaccgg tgcgacgtgg cttcccagag tgctgatggc
     8641 caacctcgtc gtcgaggtgc tgatagtcgt caccggtggt ctggtccggc tgaccggaag
     8701 cggtttgggc tgcccgacct ggccccagtg cgtccccggc tcctacatcc ccgtcgccca
     8761 tcaggcccag ggatggcatc gctatatcga gttcggcaac cgcacgctca ccagtgttgt
     8821 gagcatcgct gccatcgcaa cggtgtatgc cgtgtggcgc tggaccggcc gccggcgcga
     8881 cctcatggtg cctgcgtggg tcgtcctcgg tggggtggcc acccaggcca tcctgggcgg
     8941 catcacggtc cggaccggcc tgagccccat cacggtgtcc gcgcacttcc tcgtgtcgat
     9001 gtgcctcgtt gccgcgtcgg cata
//
LOCUS       DASYFY010000445        10453 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_346717, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000445 DASYFY010000000
VERSION     DASYFY010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 10453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10453
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346717"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VGN19_08915"
     CDS             complement(<1..426)
                     /locus_tag="VGN19_08915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196047.1"
                     /translation="MSGSDSSTAVRSSVSSVRQTLEGPALTAPARLCFIVEEKYEHDV
                     MPAAVADVLSRWGHDVDVLRPHAVLTDISALTDGSRSYDAYVLKTVSSGPGLSILEAI
                     GAAGLPTVNDHRAIRLARDKVVAASVARMAGIPFPATYFA"
     gene            972..1739
                     /locus_tag="VGN19_08920"
     CDS             972..1739
                     /locus_tag="VGN19_08920"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEV7196048.1"
                     /translation="MIGHRGSTAAGCRENSVDAVLTAMALGADGVEVDVRLSSDGVLM
                     CSHDAVVTTSLGRELTVSETSAAELIARAARDADGHLATLPEVLAVLAAQGTSHVVVE
                     AKPVADQIGAFRTARALANLLVPLSNSMVITVSSFDPILLGAVRRMVFGTRVRTAVLG
                     PATESAVAVLRRADEAGDHEVHLSLKALRESPHAVRMAHQRGIAVTAWTVNGADLAEV
                     AALGVDAVITDHIAAARAAACLGASPLPVALAGVTAC"
     gene            1790..2473
                     /locus_tag="VGN19_08925"
     CDS             1790..2473
                     /locus_tag="VGN19_08925"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEV7196049.1"
                     /translation="MTSESDRGDGVMEGASGSRPSDEGWAHGCALFYRDAAGSLQVVS
                     LEPLTSLTIGRDSGCDLQIRWDESISRVHAELVRVGHHWAVVDDGLSRNGTFLNGERV
                     SGRKRVHDGDTLVLGDTTFNFRDVRAGTSQLTKVQAEILTSASLSPTQRRILTALCRP
                     YKQENAYGTPASNLEIAGELFLSVDAVKTQLRTLFQKFHIEDLPQNQKRTKLVERAFA
                     LGLVSRRDL"
     gene            2812..3246
                     /locus_tag="VGN19_08930"
     CDS             2812..3246
                     /locus_tag="VGN19_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HEV7196050.1"
                     /translation="MTGTERDRDALGRARQARPRDELGRPLPYGTEGVEPVSEEPRPA
                     EETLTTARELVAAGRPFSAHEVLEARWKAGPPEERDLWQGLAQVCVAITHAARGNRTG
                     AERLADRAALRLAAYAATGGGTYGVDLDAVMECARSQVAGSR"
     gene            3353..3922
                     /locus_tag="VGN19_08935"
     CDS             3353..3922
                     /locus_tag="VGN19_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017887709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196051.1"
                     /translation="MIVWLNGTHGAGKTTTSALVQQLIPDSRVFDAEKVGETLMGITP
                     GLPPTDNFQHWPPWRPLVVETARRILDYTGGTLVMPMTVLVEPYWREISTGLASHAIP
                     VRHFVLHADQDTLRGRIEEDALLGPSDFRLNHLDAYAEAAHAWLHDEAEVIDTTHLTP
                     AQAALQIAAAVGSECPVAPAPAQPQHFGS"
     gene            3919..4317
                     /locus_tag="VGN19_08940"
     CDS             3919..4317
                     /locus_tag="VGN19_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010205842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEV7196052.1"
                     /translation="MTIKTPPSPWHRHPAVRSGEALSRGERAADRMRNVMGSWPFVFG
                     FFAVMITWAIVNSVFALGGPNGFDPYPYILLNLFLSMLAGVQAAALLIAAKRSDSVAA
                     EIAVHTERPQDPARREHLDHRGGEAADRPA"
     gene            4452..5345
                     /locus_tag="VGN19_08945"
     CDS             4452..5345
                     /locus_tag="VGN19_08945"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEV7196053.1"
                     /translation="MQTLTTGRGLLESPRWLGDRLWFSDWTSGTILEIDASGHPEVVV
                     EHHSLPLCFDVLPDGSPLLVSGPSRALLRLGADGSLTAYADLAPLSRFGYNDIVIDGR
                     GNAYVNNGNAQFGTMPAPGSTAPGFVALVTPDGTASVVAEDLAFPNGMAVTADNGTLV
                     VADSYRHQLVGFDIAPDGTLSGRRVWADLGDDAPDGICLDAQGAAWYASVPGQHCVRV
                     AEGGEVLDTVDVDRGAFACMLGGADRATLFVVGARWPGAEHLMDYTDWDGTVWSTPAP
                     AAGAGWPGPPYSRPTVATRTR"
     gene            complement(5237..5623)
                     /locus_tag="VGN19_08950"
     CDS             complement(5237..5623)
                     /locus_tag="VGN19_08950"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015881864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEV7196054.1"
                     /translation="MSSSPFAQTPEPPYVAVIFTSTRTEGDRGYESMSESMRELASEQ
                     PGYLGIESARDDLGITVSYWINEDSARAWKDVAAHLVAQRRGQEVWYQDYRVRVATVG
                     REYGGPGHPAPAAGAGVDQTVPSQSV"
     gene            complement(5755..5940)
                     /locus_tag="VGN19_08955"
     CDS             complement(5755..5940)
                     /locus_tag="VGN19_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HEV7196055.1"
                     /translation="MSQFISKFTTQFRAARAEREQGATAVEYGLMVALIAIVIIVAVA
                     FLGTNLSGLFNQVAGSV"
     gene            complement(6077..7021)
                     /locus_tag="VGN19_08960"
     CDS             complement(6077..7021)
                     /locus_tag="VGN19_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018777536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEV7196056.1"
                     /translation="MHNAPSREADPRGREWELSRRAALGVGCGLMLAACTQTTPHSSA
                     PVGGQATAVAPLATPGLTGAPPPLVSPGLTGARAAVTLSAVEARYGSVQPTRWGLEVP
                     GVVTRLNTGDQKVAALTFDACGGRGGSGYDSALVALLRQHGIKATLFLNHRWILANPT
                     VARELAQDPLFDLANHGTRHLPLSVRGRSAYGITGTRSVREVYDEVETNASFMADLLG
                     RPVRLFRCGTAYYDDVAASVVRDLGMYPVGFTVNGDAGATFSARQVSTAMQAVRPGAI
                     VIGHMNHPLHATAAGMGTALPALVASGYEFVHLADHIS"
     gene            7160..7780
                     /locus_tag="VGN19_08965"
     CDS             7160..7780
                     /locus_tag="VGN19_08965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196057.1"
                     /translation="MTTSELGALRLARAFGFAVAAFALSVGAHVLAGGTPPSLTASLV
                     LGGSTAWASLFLTGRRLGARSMVVAMGLAQVLLHEALMMSTPGGRCTGLDRGGNHLHA
                     LSSAARSVCTAMPSLPHAHGIPLGMSLAHAVAAILVGLVLARGESAIWFLAALVWPSR
                     PVAVVVPVRRPRAWSIPTVPAVRRRSQRLAPISRRGPPHGPVVATR"
     gene            7898..8497
                     /locus_tag="VGN19_08970"
     CDS             7898..8497
                     /locus_tag="VGN19_08970"
                     /inference="COORDINATES: protein motif:HMM:NF016149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance CopC family protein"
                     /protein_id="HEV7196058.1"
                     /translation="MNRHKPQLLRAAAGVGILIVLAATTALSAPTAAQAHAVLLRTSP
                     ARGATVPTGPAEVTLTFDEPPLQLGATVRVSGPSGVVSAGSPRIEKATVHQALTANLP
                     AGAYRVDWKVTSDDGHPVSDTFSFTVSPAAATSGPSSAATPTTPAPGATTTSASSTPP
                     SATSPSSSSLLPWGLAALAVVVLAIVGFAASRRAGGAKP"
     gene            8494..8877
                     /locus_tag="VGN19_08975"
     CDS             8494..8877
                     /locus_tag="VGN19_08975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196059.1"
                     /translation="MTKSRYVATVVGVLAALTLGACGGTPGASPAGPSAKATGTNLRV
                     IRVTIHGKDVSPSPGDVQVPLGTTVRLVVTSDHEDELHAHGFEVERTLKAGSPTTLDL
                     NAANPGVYEIETHHPPLTLMRLVIR"
     gene            8915..9604
                     /locus_tag="VGN19_08980"
     CDS             8915..9604
                     /locus_tag="VGN19_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1345 domain-containing protein"
                     /protein_id="HEV7196060.1"
                     /translation="MPNTNAPQGSSNQPQSHTSRRSDPPARVRVAVAGAAGVATGVGA
                     SFPLTWQVGLLLGWMTTAAIFVGWTWLTVWPMGQVETASRAVREDPGRAASDLVVLVA
                     AIGSLGAVGLLLLGGTSSGGTKDVQAAMSLVGVGLAWGAVHTMFTTRYARLYYTSDTK
                     AVDFNEDDPPCYRDFGYLAFTIGMTFQVSDTPLQTKEIRATALRHALLSYLFGVVVIA
                     TTINLVAGLGK"
     gene            complement(9608..9787)
                     /locus_tag="VGN19_08985"
     CDS             complement(9608..9787)
                     /locus_tag="VGN19_08985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196061.1"
                     /translation="MKGNSVGVWQRVLDRVAPLMEPDVSVLDRLDGLTRGPADGPRPT
                     ARLSQAAEGAEPATA"
     gene            complement(9933..>10453)
                     /locus_tag="VGN19_08990"
     CDS             complement(9933..>10453)
                     /locus_tag="VGN19_08990"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196062.1"
                     /translation="ADLPPGTPRSVAQAVMDHLVDLDEQEDDCAVLAIGRSPEGHRRA
                     SIVVPPLPESVKGARDWAREQLAGWGIDDGDQHSVVTGISELITNAVLHAGTESYLSI
                     DLDSGAIAVTVADSGHRGEPVLTGADTMAVRGRGLSLVRAIADSFGTHRTSAGTTVWF
                     EIGVEVTSDCLR"
BASE COUNT         1601 a         3657 c         3531 g         1664 t
ORIGIN      
        1 ggcgaagtac gtggcaggga agggaatgcc cgccattctg gcgacgctgg ccgcgacgac
       61 cttgtcgcga gcgaggcgga tcgcgcggtg gtcattgacc gtcgggagcc cggcggcccc
      121 gatcgcttcg aggatgctga gccccggtcc tgaggaaacc gtcttgagca cgtaggcgtc
      181 gtacgaacgg ctcccgtccg tgagggcgga gatgtcagtg agcaccgcgt gcggacgcag
      241 cacgtccaca tcgtgccccc agcgggagag cacgtcggca acggcagccg gcatcacgtc
      301 atgctcgtac ttctcctcga cgatgaagca gagccgagct ggagcggtga gcgccggacc
      361 ctcgagggtc tgccgcaccg aggacacgct gcttcgcacc gcggtgctgc tgtctgaacc
      421 agacatgccg agccacttcc gttccgtgtc ggtgatccag accctctagg cctgtgcttc
      481 gactctggcc tcgcgaggct caccgtcgta ggcacccaag ggctgacccg gcgctgctgc
      541 aggtgtgctg ccaccacccc ttggtggagc tgcgctcacc gcgacgctcc ggagcgtgga
      601 cctgtccact ccagcccgcc gcaggccggc ccacccaggg tggttctcga ccacacccgt
      661 gtggtgatca agccacccct acggtgcgtt accccggtcg acctacggcg gcagggtttg
      721 tggtgcggcc aagagggcca ctcggacagg aagtcactcg aacagaagag gtgagctccg
      781 tggaggcagc accacgaagg gccggtctca gcgtgatcat gccggcgcgc tcagctcccg
      841 cccattcccc tgagccagag cctcaaagtc cgccatcgtc cgcatggtca gccggactgc
      901 gcggccgaga ccgatcccga gtcgggctga cgggcacgct ccgaaccatc cgggtcgagg
      961 ctcacccgct cgtgatcggg caccgcggaa gcactgcggc gggctgtcgt gagaactcgg
     1021 tggacgcggt gttgacggcg atggcactgg gggccgacgg cgtggaggtg gacgtgcgtc
     1081 tcagttctga cggggtgctc atgtgcagcc acgacgctgt cgtcaccacg tctctcggac
     1141 gtgagctcac ggtgtccgaa accagcgcgg cggagctgat cgctcgcgct gcccgtgatg
     1201 cagacggcca cctcgccacc cttcccgaag tgctggccgt cctcgctgcc cagggcacca
     1261 gccacgtagt ggtcgaggcc aagcccgtgg ccgaccagat aggggcgttt cgcaccgcta
     1321 gagccctggc caacctcctg gtgccgctga gcaactcgat ggtgatcact gtctcctcgt
     1381 ttgatcccat cctgctcggc gcggtgcgcc ggatggtgtt tgggacgcgc gtacgcactg
     1441 ccgtgctggg tccggcaacg gaatcagctg tcgcggttct ccgtcgtgcc gacgaagccg
     1501 gggaccacga ggtgcatctg agtctcaagg cgctgcggga gtcgcctcac gcggtgcgca
     1561 tggcacatca gcgcggcatc gcggtcaccg cgtggacggt caacggcgcc gacctggccg
     1621 aggtcgctgc actgggagtg gacgccgtga tcaccgacca catcgcggct gctcgggccg
     1681 cggcgtgcct gggcgcctcc ccgctgcccg tcgcactggc tggcgtcacg gcatgctgac
     1741 ggaggggtcc gcgggtctac cgtggacagc acagcgtggg aggtgtgaca tgacgagcga
     1801 gtcagaccgg ggcgacggag tcatggaagg cgcgtcgggc tcacgcccct cggacgaggg
     1861 ctgggcccac ggatgcgctc tcttctaccg cgacgccgcg gggtccctgc aggttgtatc
     1921 actggagccc ttgacgtccc tgacgatcgg ccgggactca gggtgcgacc tgcagattcg
     1981 ttgggacgag agcatttcgc gagtgcacgc cgagctcgtc cgcgtcggcc accattgggc
     2041 cgtagtagac gacgggctct cgcggaacgg cacctttctc aatggtgaac gtgtgagcgg
     2101 ccgaaaacgc gtgcatgacg gcgacacgct ggtcctcggg gacaccactt tcaacttccg
     2161 ggacgtcagg gccgggactt cgcagctcac caaagtgcag gccgagatcc tcacgtccgc
     2221 ctcgctgtcc cccacccagc gacgcatcct cacggcgctg tgccggccgt acaagcaaga
     2281 gaatgcctac ggcacaccgg cttcgaacct ggagatcgcc ggagagctgt tcctcagcgt
     2341 agacgcggta aagacgcaac ttcgcacgct cttccagaag ttccacatcg aggacctccc
     2401 ccagaaccag aagcggacca agctcgtcga gcgcgccttc gcgcttggac tggtgtcacg
     2461 ccgcgacctc taggttcggg aggttcacct ggtgtcgcag tcagcacgtc gcgtggccat
     2521 gtggaagcgg ccgccacgga aggggggccg ctcgcgcagg aggtgcgccc cctcgaccgt
     2581 gcggggggat gcagggaggg ggcgcaccgg gtgacctgcc gcagtggtgt cgcaccctga
     2641 gggcacgcag acagccccgg aggtacgcga ccagggtccg gggcagcaga cccaggatat
     2701 gcctgatcga gggcctgaat ccccgtcaga tggacgaggc ggcctccccc cattgtgctg
     2761 aacgcgtgtg gccgtgagag ccgtcactgc accttctgag acgctgttct cgtgactgga
     2821 actgagcgag accgcgatgc gctcggccgt gctcgccagg cgaggcctcg ggacgagctg
     2881 ggtcggcctc tcccctacgg caccgaaggc gtagagcccg tctcggagga gccgcgacct
     2941 gctgaggaaa ccctgaccac agcgagagag ctcgtggcgg ccgggcgtcc cttctccgcc
     3001 catgaggtcc tggaggcgcg ctggaaggcc ggaccgcccg aggagcggga tctctggcag
     3061 ggattggcgc aggtctgcgt ggcgatcacc cacgctgccc gcggcaaccg gaccggcgcg
     3121 gagcggctcg ccgatcgggc ggccctgaga ttggctgcgt atgccgcgac cggagggggc
     3181 acctacgggg tcgaccttga cgcggtgatg gagtgcgcgc gcagccaggt cgccgggtcc
     3241 aggtagctcg tccggtggct gctcgccacc cggccatggg gcgcctcacc atcctccctc
     3301 tgcaccctgc cctcaaggcc aggttcggcc gcacggcggt agcgtcgggc ccgtgatcgt
     3361 atggctcaac ggcacccatg gcgcaggcaa gacgacgacc agtgcactgg tgcagcagtt
     3421 gatcccggac tcccgggtgt tcgatgccga gaaggtcggc gagaccctca tgggcatcac
     3481 tccggggttg ccccccacgg acaacttcca gcactggccg ccgtggcggc ctctggtggt
     3541 cgagaccgcc cgtcgcatcc tcgactacac cggcggcacc ctggtcatgc ccatgaccgt
     3601 tctcgtcgag ccgtactggc gagagatcag cacggggctc gcctcccatg ccatcccggt
     3661 acggcacttc gtccttcacg ctgaccagga caccctgcgc gggcgcatcg aggaagacgc
     3721 tcttcttggg ccctccgact tccgtctcaa ccacctcgac gcgtacgccg aagcggccca
     3781 cgcctggctg cacgacgagg cggaggtcat cgacaccacg cacctcacgc ccgcccaagc
     3841 cgccctgcag attgcggccg cagtcggttc ggagtgtccg gtcgcacctg cgcctgcgca
     3901 accgcaacac ttcgggtcat gacgatcaag acgccgccgt cgccctggca ccgccacccc
     3961 gccgttcgtt cgggcgaggc cctttcgcgg ggcgagcgtg ccgcagaccg gatgcgcaat
     4021 gtcatgggct cctggccctt cgtgttcggc ttcttcgcgg tgatgatcac ctgggccatc
     4081 gtcaactcgg tgttcgccct cggcggcccg aacggcttcg acccctaccc gtacatcctg
     4141 ctcaacctct tcctgtcgat gcttgccggc gtgcaagccg ccgcgctgct catcgcggcc
     4201 aagcgttctg actcggtcgc ggccgagatc gccgtgcata ccgagcgacc tcaagaccct
     4261 gctcgccgag aacacctcga tcaccgagga ggtgaagcgg cagaccgacc tgcttgagga
     4321 gatccaccgt cacgtggccg cgctggcgcc gcgatccgac acgcactgag ccgcgatgag
     4381 tccggccgcg cccgcaggtc atcaccacag gccgccaggt aggcgacgac gtgcgacgaa
     4441 gggatcagca gatgcagaca ctcacgacgg gacggggcct gctcgagtcc ccccggtggc
     4501 tgggcgatcg cctgtggttc tcggactgga ccagcggcac aatcctcgag atcgacgcgt
     4561 cggggcaccc ggaagtcgtc gtcgaacacc actccctgcc gttgtgcttt gacgtccttc
     4621 ccgacggctc accgctgctc gtctctggcc cgagccgcgc actgttgcga ctgggagccg
     4681 acggctcgct cacggcatac gcagatctcg ctccgctgtc ccggttcggc tacaacgaca
     4741 tcgtgatcga cggacgcggc aacgcctacg tcaacaacgg caacgcgcag ttcgggacca
     4801 tgccggctcc cggatcgacc gcacccgggt tcgtcgcgct ggtcacgccg gatggcaccg
     4861 cctcggtcgt ggcagaggac ctcgccttcc ccaacggcat ggccgtgacg gccgacaacg
     4921 ggacgctcgt ggtggccgac tcctatcgtc accagctcgt cggcttcgac atcgcgccgg
     4981 acggcacgct gtccgggcgg cgggtctggg cagacctcgg cgacgacgcc cccgacggca
     5041 tctgtctcga tgcgcagggt gctgcctggt atgcctcagt gccgggccag cactgtgtgc
     5101 gcgtcgcgga gggcggcgag gttctcgaca ccgtcgacgt cgaccgaggg gccttcgcgt
     5161 gcatgctcgg tggcgccgat cgggcgacgt tgttcgtggt gggtgcccgg tggcccggtg
     5221 ctgagcacct catggactac accgactggg acggcacggt ctggtcgacg ccggctccgg
     5281 cagccggggc agggtggccc gggccgccat actcgcgccc cacggtggcg acccgcacgc
     5341 gatagtcctg gtaccaaacc tcttgccccc gccgctgggc gacgaggtgt gcggcgacgt
     5401 ccttccacgc ccgcgcagag tcctcgttga tccagtagga caccgtgatg cccaggtcgt
     5461 ctcgcgctga ctcgatgccc aggtagccgg gttgttcgga cgcgagctcg cgcatggact
     5521 ccgacatcga ctcgtacccg cggtctccct cggtcctggt ggaggtgaag atgactgcga
     5581 cgtagggcgg ttcgggagtc tgggcgaaag gagagctgct cacccctcga ttctcccctg
     5641 ccgactccaa accgggacat tggacagcgc cccgccagct gttgacggag cgctgtcatg
     5701 ctctgggccg cgaacgcgct gcggacgagg caggcggtcg agcgggccag tgtcctagac
     5761 gctgccggcg acctggttga acaggccgga caggttggtg cccaggaagg cgacagccac
     5821 gatgatgacg atcgcgatca acgcgaccat cagtccgtac tcgactgcgg tggcgccctg
     5881 ctcgcgctcg gcgcgcgcgg cgcggaactg tgtggtgaac ttggaaatga actgcgacat
     5941 gacggtgacc ccttcaccca ttcgtggaac cttggcatga acctgcgctg ctgcagacaa
     6001 ggctcccgcg gttgcatcag gcaaccaatc agccgttcgg gcgaaattca gtgacgaatg
     6061 gctcgccccg ctcgggtcag gaaatatggt cggcgaggtg gacgaactcg taccccgagg
     6121 cgacgagcgc aggcaaagcc gtgcccatgc ctgcggcggt ggcgtgcaga gggtggttca
     6181 tgtgcccgat gacgatggcg ccggggcgga ccgcttgcat agctgtcgag acctgtcgcg
     6241 cggagaacgt cgccccagca tcgccgttga ccgtgaagcc caccggatac atcccgaggt
     6301 ctcggaccac gctcgccgcc acgtcgtcgt agtacgcagt cccgcaacga aacagccgga
     6361 cgggtcgtcc gagtaggtcg gccatgaagg aggcgttcgt ctccacctcg tcgtacacct
     6421 cgcggacgct gcgagtcccg gtgatgccat aggccgaacg accgcgcact gacagaggta
     6481 ggtgccgggt gccgtggttc gccaggtcga acagcgggtc ctgcgccagc tcgcgggcca
     6541 cggtggggtt cgccaggatc cagcggtggt tgaggaacag cgtcgccttg atgccgtgct
     6601 ggcgtagcag ggcgaccagc gccgagtcgt agccgctccc gccacgaccg ccgcacgcgt
     6661 caaaggtcaa ggccgcgacc ttctggtcgc cggtgttcag ccgggtgacg acgccgggga
     6721 cctcaagacc ccacctggtg ggttggaccg agccatacct cgcctcgacc gcgctgaggg
     6781 taacggccgc gcgagcccct gtaagcccgg gtgacaccag agggggtggc gcgcccgtca
     6841 gtccgggagt ggccagcgga gccaccgctg tggcttggcc cccgacgggt gcactcgaat
     6901 gcggagtcgt ctgggtgcac gcggcgagca tgagcccgca gcccactccc aaggctgcgc
     6961 ggcgagacag ctcccactcg cggcctcgag ggtcagcctc ccggctcggc gcattgtgca
     7021 cgccgggaac gtaccgacga ccacctgaga cagagcaaag gagcaggtcg tcaggcgtgt
     7081 cattcctggg tacgcaggcc cgagggctgc tgagctgacc tcacctccct cgcagaacac
     7141 ggcgtttaca gtggtggcca tgacgacgtc ggagctgggc gcgctgcggc tcgcccgagc
     7201 cttcggcttt gccgtcgccg cgttcgccct gtcggtcggc gctcacgtgc ttgctggcgg
     7261 gacgccaccc tcgctgacgg catccctggt gctcggcggt tcgaccgcct gggcctccct
     7321 cttcctcacc ggccgccggt tgggagcccg gtccatggtc gttgccatgg gactcgccca
     7381 ggtgcttctg cacgaagcgc tgatgatgtc cacgccaggg ggtcgctgca cggggctcga
     7441 tcgtggcggg aaccaccttc atgctctgag ctcggcggcc cggtcggtct gcacggcgat
     7501 gccttcgctg ccccacgccc acggcatacc gctggggatg tcgctggccc acgcggtggc
     7561 ggccatcctg gtcggcctgg tcctggctcg cggtgagtcg gcaatctggt tcctggccgc
     7621 actggtgtgg ccatcccgac cggtcgcggt ggtggtcccc gtccgtaggc cgcgggcgtg
     7681 gtcgattccg accgtcccgg ccgtgcgccg ccggagccaa cggttggcgc cgatttctcg
     7741 tcgcgggcct ccgcacgggc ccgtagtcgc cacccgctga ccactcgcgg gcagtacagc
     7801 tctgccctga ccccaaacgg ggtcgtgggc ctcccctctt ccccctcggc tatccggtga
     7861 ggtctgcccg gcgccgctcc cacagaaggt ctttgtcatg aatcgtcaca agcctcaact
     7921 cctgcgcgcc gccgccggcg tcggcatcct gatcgtcctc gcggccacga cggccctcag
     7981 cgcgccaacg gccgctcagg cgcatgccgt cctcctgcgc accagcccgg cacgcggggc
     8041 caccgtgccc accggtcctg cggaggtcac cctcaccttc gacgagccac ccctccagct
     8101 gggcgcgacc gtgcgtgtga gcgggccgag cggtgtggtg tcggcgggct cgcctcgcat
     8161 cgagaaggcc accgtgcatc aggcgctgac cgcgaacctg cctgcgggtg cctaccgagt
     8221 cgactggaag gtcacctccg acgacgggca tccggtctcg gacaccttca gcttcacggt
     8281 ctcgccggcg gccgccacct caggcccatc gtcagcggcc accccgacga caccggcgcc
     8341 cggcgcaacc accacgtcgg catcgtcgac gccgccctca gcaacgtcac cctcgtccag
     8401 cagcctcctg ccgtggggtc tggcggccct ggctgtggtg gttctcgcga tcgtcgggtt
     8461 cgccgcgagc cgccgagcgg gcggggccaa gccatgacca agtctcgata cgtcgcgacc
     8521 gtcgtcgggg ttctcgccgc cctcaccctc ggcgcctgcg ggggaacgcc gggggcgagc
     8581 ccagccggcc cctccgccaa ggcgactggg acgaaccttc gggtgatcag agtgacgatc
     8641 cacggcaaag acgtctcccc ctcgccaggc gatgtccagg tgccgctcgg gaccaccgtg
     8701 cgtctggtcg tcaccagcga ccacgaggac gagctccatg cgcatggctt cgaagtcgag
     8761 cgaaccctca aggcgggatc gcccacgacg ctggatctga acgcggccaa cccaggcgtc
     8821 tatgagatcg agacgcacca cccgccgctg acgctgatgc gcctggtgat tcgttagccg
     8881 gtctgggcgc ccgagcacgg gctagcgttg gtgcgtgccc aacaccaacg cgccgcaagg
     8941 ctccagcaac cagccgcagt cccacacgtc caggcgctcc gacccaccgg cgcgggtgcg
     9001 cgtggcggtt gcaggggcgg cgggcgttgc gaccggtgtc ggcgcgtcgt tcccgctgac
     9061 ctggcaggtg ggcctgttgc tcggctggat gaccacggct gccatcttcg tcggctggac
     9121 atggctgacg gtctggccga tgggacaggt cgagacggcg tcgcgcgccg tgcgcgagga
     9181 tcccggccgc gccgccagcg acctggtggt gctcgtcgca gccatcggca gcttgggcgc
     9241 cgtcgggctg ctgctgctcg gcggcacgag cagcggcggc accaaggacg tccaggccgc
     9301 gatgagcctg gtcggcgtcg ggctcgcgtg gggcgccgtg cacaccatgt tcacgaccag
     9361 gtacgcccgc ctctactaca cctcggacac gaaggccgtg gacttcaacg aggacgatcc
     9421 gccctgctac cgggatttcg gctacctggc gttcaccatc ggcatgactt tccaggtctc
     9481 cgatacgccc ttgcagacca aggagattcg cgccacggcg ttgcgccatg cgctgctgtc
     9541 gtacctgttc ggcgtcgtgg tcatcgccac caccatcaac ctcgtggcgg ggctcggaaa
     9601 gtaggcttca ggcggtcgcc ggctcggcac cctcggcggc ttgcgacagg cgagccgtag
     9661 gccgcggccc gtcagccgga cctcgcgtca ggccgtcgag acggtcgaga actgagacgt
     9721 ccggctccat caacggagcg acccgatcga gaacccgttg ccacacgccc acgctgttgc
     9781 ccttcatgcc gtcacacgtc cgcgagattg tctggggcac agcatggcgg ctccaggcca
     9841 ccggtgcgag ccgacgcacc gccgacggtc cttcaggtgg accccacatc ggccgttcgg
     9901 ctgacggcct acgtctgatc cacgtggtgg agctaacgca ggcagtccga ggtgacctcg
     9961 acgccgatct cgaaccagac tgtcgtgccg gccgaggtgc ggtgggtgcc gaaggagtcc
    10021 gcgatcgctc gtaccaacga cagcccgcga cccctgaccg ccatcgtgtc ggccccggtg
    10081 agcacgggct ccccccggtg accgctgtct gcgaccgtca cggcgatcgc accggagtcg
    10141 aggtcgatgc tcaggtacga ctccgttccc gcgtgaagca cggcgttggt gatgagctcg
    10201 gagatccccg tgacgacgga gtgctggtcg ccgtcgtcga taccccaacc ggcgagctgc
    10261 tcccgggccc agtcgcgggc tcccttgacg gactccggta acgggggcac cacgatggac
    10321 gcacgtcgat gcccctctgg tgagcgcccg atcgccagga ccgcgcagtc gtcctcctgc
    10381 tcgtcgaggt cgaccaggtg gtccatcact gcctgggcga cgctgcgcgg tgtgcccggt
    10441 ggcaggtcgg cga
//
LOCUS       DASYFY010000446         1590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1347145, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000446 DASYFY010000000
VERSION     DASYFY010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347145"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(37..1176)
                     /locus_tag="VGN19_08995"
     CDS             complement(37..1176)
                     /locus_tag="VGN19_08995"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEV7196063.1"
                     /translation="MQPSALVPSIPARERVRLSEALERFVLHCEAQHARRTVYAYRIT
                     NVALLAHTGDLYADELRPVHLDRWFAHLRGPHVDSRGRRRGPIGAGGFNAYLSRVRPF
                     LTWMYLNDLIDRDFGKTLHRMRRPHRVKLQLDAAQVRALLEDAATPRDRALIAVGFFT
                     AMRRSELQAIRLRDVDLDRGTVFFRVWKSDTEDVLPLGPELRSELHRWLAEYERNVHR
                     HHHRGLLPAHYLIPAYLPRRYAPGLTVVDGQAQRNVTFGALNPAKPAAHSYRVVKDGL
                     RRLGLPDHHQGVHTLRRSAARQMFDTLVQTRRYDGALRVVQALLHHSTLATTEEYIGL
                     TTEALTRDEFLRTAVLLHHPGQSPGRAASHAMQHLVASAPRASGT"
     gene            1401..>1590
                     /locus_tag="VGN19_09000"
     CDS             1401..>1590
                     /locus_tag="VGN19_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196064.1"
                     /translation="MVGKDSELSAAYRFLNEMDAQALSAEAQEPHSVIAHDAMTESYL
                     VKGPFVGGGTAQGGVQRGR"
BASE COUNT          237 a          492 c          625 g          236 t
ORIGIN      
        1 tggcggcgaa gtgggacgcc catagtgcgg gcgtcgctac gtgccgctcg cacgcggagc
       61 cgaggccacg aggtgctgca ttgcgtggct ggcagcccgg ccaggtgatt gcccggggtg
      121 gtgaaggagc actgcggtgc gcaggaactc atcgcgggtc agggcctcgg tggtcaagcc
      181 gatgtactcc tcggtggtcg ccagggtgct gtggtgcagc agggcttgga cgacgcggag
      241 tgcgccgtcg tagcggcggg tctggaccag cgtgtcgaac atctgcctcg ctgcggagcg
      301 gcgcagggtg tgtacgccct ggtggtggtc cggcagcccg agccggcgca gcccgtcctt
      361 gacgacccgg taggagtgcg cggccggctt ggcggggttg agcgcgccga aggtgacgtt
      421 gcgttgggct tggccgtcga cgacggtcag gccgggggcg tagcggcggg gcaggtaggc
      481 ggggatgagg tagtgagcgg gcagcagccc gcggtggtgg tgtcggtgga cgttgcgttc
      541 gtactcggcc agccaccggt gcagctctga gcgcagctcg gggcctagcg gtaggacgtc
      601 ttcggtgtcg gacttccaga cccggaagaa caccgtgcca cggtccaggt ccacgtcgcg
      661 tagacggatg gcctggagct cgctcctgcg catggcggtg aagaacccga ccgcgatcag
      721 ggcccggtca cgcggggtcg cggcgtcctc gagcagcgcg cgcacctgcg cggcgtccag
      781 ctgcagcttg acccggtgcg ggcgtcgcat ccggtgcagg gtcttgccga agtcgcggtc
      841 gatcaggtcg ttgaggtaca tccaggtcag gaacggccgc acccgggaca ggtaggcgtt
      901 gaacccgccc gcaccgatcg ggccgcgtcg ccggcccctg gagtcgacat gcgggccgcg
      961 caggtgcgcg aaccaccgat ccaggtgcac cggtcgcagc tcgtcggcgt acaggtcccc
     1021 ggtgtgcgcg agcagcgcca cgttggttat gcggtaggcg tacacggtgc gtctggcgtg
     1081 ctgcgcctcg cagtggagca cgaaccgctc gagcgcctcg gacaggcgaa cgcgttcacg
     1141 ggcggggatg gacgggacca gtgcagaggg ttgcatcgca ccgacgctaa cgccgcgcga
     1201 gcaccgggcc tcctcccgcg caccgcccac ggggtcgggc cgccccgtcg gacgcggctg
     1261 gctcttcacc tgagcgggtg agcgtggcaa agtcctcgga ggggcaggct ccccacggtc
     1321 gcctgtcacc ggactcgcag tgcggacgcg gacggagcca agggccgtcg gcgggcgccg
     1381 ctcacgagga ggagttggcc atggtcggga aggactcgga gctaagcgcc gcgtaccgct
     1441 ttctcaacga gatggatgcc caagcgctga gcgccgaagc gcaggaacca cacagcgtga
     1501 tcgcccatga cgcgatgacc gagtcgtacc tggtgaaggg tccgttcgtt ggaggcggaa
     1561 cggctcaagg tggagttcaa cgaggccgcg
//
LOCUS       DASYFY010000447         7234 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_873045, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000447 DASYFY010000000
VERSION     DASYFY010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7234
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_873045"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VGN19_09005"
     CDS             complement(<1..188)
                     /locus_tag="VGN19_09005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016463853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7196065.1"
                     /translation="MAIELTGLTKSFGSVRAVRGIDLTVRPGEIVAFLGPNGAGKTTT
                     IDMMLGLSRPDGGTARVYG"
     gene            complement(312..2039)
                     /locus_tag="VGN19_09010"
     CDS             complement(312..2039)
                     /locus_tag="VGN19_09010"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigE family RNA polymerase sigma factor"
                     /protein_id="HEV7196066.1"
                     /translation="MQPEVDEEFAQYVRARQHRLLRAAWLVCGDTHLAEDLVQVALVK
                     LARRWDSMRGESPDAFVRRILYRYAVSASRRTSRESLSPFPDLAVESVPPQWSRDPDR
                     GDDQELALGALTALTAKQRAVLVLLFFEGRTELETADLLGVSRASVQSQSQSQTLLGG
                     DLPALLERASEHLPELDFAQDSWAGAIAALRHRRRVWLGSLGAAAAAALAVAAVQLSG
                     STTHPPTPAPTPTATPVVRTFADGAAYALMPLEGQEAQLRHFDAGIPSVLDLRTTPTR
                     MSALTKPLTPVVAVYLTDAGAGRFRPVLVTSRGQQVVIDRLTLLPTQGASGNPGQVLG
                     PRAVGGGGQYVVFAQPGQVVRLDTRTGTVTDYPVPSQTLGSAGWNPAGTVVTARDERS
                     AWTIDARLPGAKAMAATGSYEGTFRLSAASDSVVVTRFGTDGKAAAASTVKAPVTGTW
                     GETINSDTWAAAGAFFDQNVTHPVIRLGNGPIYQGLVAVDLEARAARLLLAPESPDGQ
                     TGRFNGCCTALGWADGQTLLYESVGSHGRWVLAWNLTSGEVFEVSQILAAADAQPVVP
                     LALNVGRRY"
     gene            complement(2130..3545)
                     /locus_tag="VGN19_09015"
     CDS             complement(2130..3545)
                     /locus_tag="VGN19_09015"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEV7196067.1"
                     /translation="MAAPSTVDTVVSLCKRRGFVFPCGEIYGGTRSAWDYGPLGVELK
                     ENIKRQWWKSMVTGRDDVVGLDSSIILPRQTWVASGHVGEFSDPLTECQSCHKRFRLD
                     HMQEAIAEKKNAKKGGEDARVDPDSIPLSEIACPNCGTRGSWTEPREFNMMLKTYLGV
                     IEDESGLHYLRPETAQGIFINFLNVMNASRKKPPFGIGQTGKSFRNEITPGNFIFRTR
                     EFEQMEMEFFVKPGEDEEWHQYWIDERMRWYTNLGINPENLRQFEHPADKLSHYSKRT
                     VDIEYRFNFAGSEWGELEGIANRTDFDLTTHSTHSGTDLVYFDQATGERYTPYVIEPA
                     AGLSRSLMTFLVDAYTEDEAPNTKGGVDKRVVLRLDKRLAPVKAAVLPLSRNADLSPK
                     ARDLAATLRQHWNIDFDDAGAIGRRYRRQDEIGTPFCLTVDFDTLDDHAVTIRERDSM
                     AQERVSLDKVEEYLGSRLLGC"
     gene            3544..3912
                     /locus_tag="VGN19_09020"
     CDS             3544..3912
                     /locus_tag="VGN19_09020"
                     /inference="COORDINATES: protein motif:HMM:NF042772.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6703 family protein"
                     /protein_id="HEV7196068.1"
                     /translation="MRRRVLCGGIRLEGVCQAANPPAVPWAIVSTPRERIESASLPLL
                     TRLSTLPRAIPFLALLALMVAGILLPGWGWVLLLLVVLFLGWIAYLTWPGLDTTNRIM
                     RGTIILFAAAITLIRAFPHH"
     gene            4010..4903
                     /locus_tag="VGN19_09025"
     CDS             4010..4903
                     /locus_tag="VGN19_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HEV7196069.1"
                     /translation="MTRLLGLLLAALAILGGCGLASSWGATHGRLRVVAAFYPLEYAV
                     RQIGGPHVDVAGLTKPGGEPHDVELTPRQVGRVATADLVVYEAGFQPAVDAAVRAEAP
                     QTAFDISPAARLDLGAVGAESAGRDPHFWLDPLRYADVGDALAERLAHLDPAHRVAYE
                     SNARAFRATMTTLDTQFRTGLAHCANLELVTSHAAFGYLGRRYGLHQDSITGLDPEAE
                     PDPGTLARISAHVRATGASTVYAETLVSPAVAETVARETGARLAVLDPIEGITGVSAG
                     RDYPAVMRANLATLRTGQDCP"
     gene            4900..5736
                     /locus_tag="VGN19_09030"
     CDS             4900..5736
                     /locus_tag="VGN19_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEV7196070.1"
                     /translation="MTAAIPTPIIELTRASFGYAERVVLQQATLTVRPGEVVAVLGPN
                     GSGKSTLVRGLLGLNDQLGGEVRLFGEDHADFRDHARIGYVPQRHTLSASVRATVTEI
                     VAVGRLSRRRWWKPVPRSGADDAVIAKALDVVGLADRADADVSTLSGGQQRRVLIARA
                     LAAGPDVLLMDEPTAGVDAANQQVLAQVLSRLTQRGTTMLIVTHELEALDDIVTRVVV
                     VQNGRIAFDGSRAAFDAQTTSFVRDHDGHHHDDDVAVGRPRLRGAPAAGPLDPRGGAH
                     HD"
     gene            5729..6778
                     /locus_tag="VGN19_09035"
     CDS             5729..6778
                     /locus_tag="VGN19_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEV7196071.1"
                     /translation="MTELLSLDFMRQALIAALLVGVAAPLVGVFLVQRRLSLIGDGMG
                     HVALAGVAVGVLTGHAPVFTALLAAVGAAVAIEVIRGRGRTSGDIALAVMFYGGIAAG
                     VVIIAKSPSSSPANLTAYLFGAITTANQNDLWVFAALTLVVLFTTWLLRPWLFAVAND
                     EEYARASGLPVTGLNIALAILTAVTVVVSMRVVGLLLISALMIIPNATAQLLGRSFRA
                     SVRWAVLVGVVCSVGGVVTSYYAETPSGGTIVLLAIGVFVLTASLTAAFARLRAHQHR
                     RAERHDHEHGPECGHQAVVHDGHVDYVHDGHLHAAHEGHYDEHDPARHEAAPGGHAPT
                     GPDSSQQNSTQEVRR"
     gene            6775..7197
                     /locus_tag="VGN19_09040"
     CDS             6775..7197
                     /locus_tag="VGN19_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEV7196072.1"
                     /translation="MTTPREPAVEGGRRPTRQRAAVTTVLAGIDGFRSAQELHALLRE
                     GGDTVGLATVYRNLQAMATDGEIDMLRTADGEAVYRACSTGHHHHLVCRRCGRTVEVE
                     GAAVETWAKSVSADHGFTDVDHTVEIVGLCADCSVPQS"
BASE COUNT         1048 a         2541 c         2497 g         1148 t
ORIGIN      
        1 ccatagacgc gggctgtgcc gccatcaggg cgggacagtc ccagcatcat gtcgatcgtg
       61 gtggtcttgc ccgcgccgtt gggtccgagg aaggcgacaa tctcgccggg gcgcacggtc
      121 aggtcgatcc cccggactgc ccggacgctg ccgaagctct tggtcagccc ggtcagctcg
      181 atcgccatca cggtgctgcc gggtccccgg gccagggtct gcgtctgtgt catagggacc
      241 agagtgtcac cggtagccgc gccggacatc acccacgctc acgaaccacc actgacgtgt
      301 gtcggggctg cctagtaacg ccggcccacg ttgagcgcca gcggcacgac gggttgcgca
      361 tcggccgcag caaggatctg cgacacctcg aagacctcgc cgctggtgag gttccacgcc
      421 agcacccacc ggccgtggct gcccacggac tcgtacagca gcgtctggcc gtcggcccag
      481 cccagcgcgg tgcagcaacc gttgaagcgg cccgtctgcc cgtccggcga ctcgggcgcc
      541 aacagcagcc gggccgcccg cgcctccagg tccaccgcga ccagcccctg gtagatgggc
      601 ccgttgccga ggcggatcac cggatgcgtg acgttctggt cgaagaaggc gccggctgcg
      661 gcccaggtgt cgctgttgat cgtctcaccc caggtgccgg tgacgggagc tttgacggtg
      721 ctcgcagcgg ccgccttgcc gtcggtcccg aaacgggtga cgaccaccga gtcggaggcc
      781 gcactgagcc ggaaggtgcc ctcgtagctg ccggtcgcgg ccatggcctt ggcccccgga
      841 agccgcgcgt cgatggtcca ggcggagcgc tcgtcgcgag ccgtcaccac ggtcccggcg
      901 gggttccagc ctgccgatcc gagggtctgc gagggcaccg gatagtcggt caccgttccg
      961 gtgcgggtgt ccaggcggac gacctgcccc ggttgggcga agacgacgta ctgccctccc
     1021 ccgccgacgg ctcgcggacc gagcacctgc ccggggtttc ctgacgcgcc ctgggtgggc
     1081 aggagggtaa gccggtcgat gaccacctgc tgtccccggc tggtgaccag gaccgggcgg
     1141 aaccgcccgg ctccggcgtc ggtgagatac acggcgacga ccggtgtcag cggtttggtg
     1201 agggcagaca tcctcgtggg cgtggtccgg aggtcgagga ccgaggggat cccggcgtcg
     1261 aagtgccgga gctgggcctc ctgcccttcc aggggcatca gtgcgtatgc cgcgccgtcc
     1321 gcgaaggtcc gcaccaccgg tgtggccgtg ggggtcgggg ccggggtcgg cgggtgagtc
     1381 gtggagccac tgagctggac cgcggccacg gcgagcgctg ccgccgccgc ggcccccagc
     1441 gaacctagcc acaccctgcg ccggtggcga agggcggcaa tcgcgcccgc ccatgagtcc
     1501 tgggcgaagt cgagctctgg aagatgttcg ctggcccgct cgagcagggc tggaagatcg
     1561 cccccgagca acgtctggct ttggctctgg ctctggacgc tcgccctcga gacgcccagc
     1621 aggtctgccg tctcgagctc ggtgcgaccc tcgaagaaca gcagcaccag caccgcccgc
     1681 tgcttggcag tcagggcagt cagggcgccc agggccagct cctggtcgtc gccccggtcc
     1741 gggtcgcgac tccactgcgg tgggacggac tcgaccgcga ggtcgggaaa cggcgagagc
     1801 gactcgcggc tggtccggcg cgaggccgac acggcatacc ggtagaggat ccgcctgaca
     1861 aaggcatcgg ggctctcgcc gcgcatgctg tcccagcgcc gggccagctt gaccagggcg
     1921 acctggacca ggtcctcggc gaggtgggtg tcgccgcaga ccagccacgc ggcacgcagg
     1981 aggcggtgct ggcgggcgcg cacgtactgg gcgaactcct cgtccacctc gggctgcata
     2041 cccctagtaa cgcatggggc ccaaccggag gttggcgcga gcgcgaccgg aggttggcgc
     2101 gagcggtcag ccgcctcagc cctggacggt cagcagccga gcagccggct gccgaggtac
     2161 tcctcgacct tgtcgagcga gacgcgctcc tgggccatgc tgtcgcgctc gcggatcgtc
     2221 acggcgtggt catccagggt gtcgaagtcc accgtgaggc agaagggcgt cccgatctcg
     2281 tcctgacgac ggtagcgccg accgatcgcg ccggcgtcgt cgaagtcgat gttccagtgc
     2341 tggcgcaacg tcgcggccag gtcgcgtgcc ttcggcgaga ggtcggcatt gcgcgacagt
     2401 gggagcacgg cagccttgac gggcgcgagc cgcttgtcca ggcgcagcac gacgcgtttg
     2461 tcgacgccac ccttggtgtt gggtgcctcg tcctcggtat aggcgtcgac gaggaacgtc
     2521 atcagggagc gggacagccc ggccgccggc tcgatgacat acggggtgta gcgctcgccg
     2581 gtggcctggt cgaagtagac gaggtcagtg ccggaatgcg tcgaatgggt cgtcaggtcg
     2641 aagtccgtgc ggttggcgat gccctcgagc tcaccccact cgctgccggc gaagttgaag
     2701 cggtactcga tgtcgacggt gcgcttggag tagtggctca gcttgtcggc cgggtgctcg
     2761 aactggcgca ggttctcggg gttgatcccg aggttcgtgt accagcgcat gcgttcgtcg
     2821 atccagtact ggtgccactc ctcgtcctcg ccgggcttga cgaagaactc catctccatc
     2881 tgctcgaact cgcgagtgcg gaagatgaag ttgccggggg tgatctcgtt gcggaagctc
     2941 ttcccggtct ggccgatgcc gaacggcggc ttcttgcgcg aggcgttcat gacgttgagg
     3001 aagttgatga agatgccctg ggccgtctcc ggtcgcaggt agtgcagccc ggactcgtcc
     3061 tcgatgacgc ccaggtaggt cttgagcatc atgttgaact cgcgcggctc ggtccacgag
     3121 ccacgggttc cgcagttcgg gcaggcgatc tcgctcagcg gaatggagtc cgggtcgacg
     3181 cgtgcatcct cgccgccctt cttcgcgttc ttcttctcgg cgatggcttc ctgcatgtgg
     3241 tccaggcgaa agcgcttgtg acatgactgg cactcggtga gcgggtcgct gaactcgccc
     3301 acgtggcccg aggcgaccca ggtctggcgc ggcaggatga tcgaggagtc cagacccacg
     3361 acgtcgtcgc gcccggtcac catcgacttc caccactgcc gcttgatgtt ctccttgagc
     3421 tccaccccga gcgggccgta gtcccaggcc gaacgggtgc cgccgtagat ctcaccgcac
     3481 gggaagacga acccccggcg cttacagaga gagacgacgg tgtcgacggt ggagggtgca
     3541 gccatgcgca gaagggtact gtgcggcggc atccggctcg aaggggtgtg ccaggcagcg
     3601 aaccccccag ccgtaccatg ggcgatcgtg tcgacccctc gcgagcgcat cgagagcgcc
     3661 agccttcccc tgctgacccg actgagcact ctgccgcggg ccatcccctt cctcgcgctt
     3721 ctcgcgctga tggttgcggg catcctcctc ccgggctggg gttgggtgct gttgctgctg
     3781 gtggtgctgt tcctggggtg gatcgcctac ctcacctggc cggggctgga caccacgaac
     3841 cgcatcatgc ggggcacgat catcctgttc gccgcggcta tcacgctgat cagggccttc
     3901 ccccaccact gacacacgta cgcccgcgta gtgcccgcgc tgcccgtact gcccgtcgta
     3961 tcgccaatcg tattgacaat cattctcaca aatgatgaga atgattgtca tgacgcgact
     4021 tctgggcttg ctgctggcgg ccctggccat cctgggcggg tgtggcctcg ccagcagctg
     4081 gggcgcgacg cacgggcggc tccgggtggt cgcggcgttc taccccctgg agtacgccgt
     4141 ccgccagatc ggagggcccc acgtcgacgt cgctggcttg accaagccgg gcggcgagcc
     4201 gcatgacgtc gagctgaccc cgcgccaggt gggccgcgtc gccaccgctg acctcgtggt
     4261 ctatgaagcc gggttccagc cggccgtgga cgccgccgtg cgcgccgagg ccccccagac
     4321 ggccttcgac atctcccccg cggcacgact ggacctcggg gctgtcggcg ccgagtcagc
     4381 cgggcgcgat ccgcacttct ggctcgatcc gcttcgctat gccgatgtcg gggatgcgct
     4441 ggccgagcgg ctcgcccacc tcgaccccgc ccatcgcgtg gcctacgaga gcaacgcccg
     4501 agccttccgg gccacgatga cgacgctcga cacgcagttc cgcacgggcc tggcgcactg
     4561 cgccaacctc gagctcgtga cctcccacgc cgcgttcggg tatctgggcc gacgctacgg
     4621 gctgcatcag gacagcatca ccggcctcga ccctgaggcc gagccggacc ccgggaccct
     4681 tgcccggatc tcggcccacg tccgcgctac cggcgcctcc acggtctacg ccgagacgct
     4741 ggtcagcccc gcggtggccg aaacggtggc ccgcgagacc ggagcccggc ttgccgtgct
     4801 cgatcccatc gagggcatca ccggggtctc cgcgggtcgc gactaccccg cggtgatgcg
     4861 agccaacctt gcgacgcttc gcaccggaca ggactgccca tgaccgctgc gatccccacg
     4921 cccatcatcg agctcacccg cgcgtcgttc gggtatgccg agcgggtcgt gctccagcag
     4981 gccaccctca cggttcgccc cggtgaggtg gtggccgtac tcggccccaa cgggtcgggc
     5041 aagtcgacgc tggtccgcgg gctgctcggc ctcaacgacc agctcggcgg cgaggttcgc
     5101 ctcttcggcg aggaccacgc cgacttccgc gaccacgctc ggatcggcta tgtgcctcaa
     5161 cggcataccc tctccgcctc ggtccgggcc acggtgaccg agatcgtcgc cgtgggccgc
     5221 ctctcgcggc gccggtggtg gaagccagtc ccgaggtccg gggctgacga cgccgtgatc
     5281 gccaaagcct tggacgtcgt gggcctggcc gaccgggcag acgccgacgt gtcgacgctc
     5341 tcgggtggtc agcagcgacg ggtgctcatc gctcgagccc tagcggccgg cccggacgta
     5401 ctcctcatgg acgagcccac ggccggggtc gacgcggcca accagcaggt gctggcccag
     5461 gtcctgtcgc gcttgaccca gcgcggtacg acgatgctca tcgtcactca cgagctcgag
     5521 gccctcgatg acatcgtgac gcgagtcgtc gtggtacaga acggccgcat cgccttcgac
     5581 gggagccggg cggcgttcga cgcccagacc accagcttcg tccgcgacca tgacggccac
     5641 caccacgacg acgacgtggc cgtgggccgc ccccggctgc gcggggcccc cgccgcgggc
     5701 ccactcgacc cgcgcggagg cgcccaccat gactgagctg ctctcgctgg acttcatgcg
     5761 ccaggccctc atcgccgcgc tgctggtcgg ggtcgccgca cccctggtcg gcgtcttcct
     5821 cgtgcagcgt cgactgtctc tcatcggcga cggcatgggg cacgtggccc tggccggtgt
     5881 cgcggtgggc gtgctcaccg ggcacgcgcc tgttttcacc gccctcctgg ccgcggtggg
     5941 cgccgcggtc gccatcgagg tcatccgcgg gcggggtcgc accagtggcg acatcgcgtt
     6001 ggcggtgatg ttctacggag gcatcgctgc gggcgtcgtg atcatcgcga agtcgccgag
     6061 cagcagcccc gccaacctca cggcatacct cttcggggcg atcacgacgg cgaaccagaa
     6121 cgacctgtgg gtgttcgccg cgctcaccct ggtcgtgctg ttcaccacct ggctcctgcg
     6181 gccgtggctc ttcgcggtgg ccaacgacga ggagtacgcg cgggcgagcg ggctgccggt
     6241 gaccgggctg aacatcgcgc tggcgattct cacagcggtc accgtggtgg tctcgatgcg
     6301 cgtcgtcggc ctgctgctga tcagcgcact gatgatcatc ccgaacgcta cggcccaact
     6361 cctcggccgc agcttccgtg cctcggtgcg gtgggccgtg ctggtgggcg tggtgtgcag
     6421 cgtcggagga gtcgtcacct cgtactacgc ggagacgcca tcggggggga cgatcgtgct
     6481 gctcgccatc ggagtcttcg tgctgacggc ctcgctcacc gcagccttcg cgcgcctccg
     6541 agcccaccag caccgtcggg ccgagagaca cgaccacgag cacgggcccg agtgcggcca
     6601 ccaggccgtg gtgcacgacg gccatgtcga ctacgtccat gacggccacc tgcacgcggc
     6661 ccacgagggg cactacgacg agcacgatcc ggcccgtcat gaggcggccc ccggcggtca
     6721 cgcaccgacc gggcctgact caagccagca gaactccacc caggaggtgc gcagatgacc
     6781 accccgcgcg aaccggcggt cgagggcggc cgccgaccca cccgacagcg tgctgccgtg
     6841 acgaccgtgc ttgccggcat cgatgggttc cgctcggcgc aggagctgca cgcgctgctt
     6901 cgcgagggcg gcgacaccgt ggggttggcg accgtctacc gcaacctgca ggccatggcc
     6961 accgacggtg agatcgacat gctgcggacc gccgacgggg aggcggtgta tcgcgcctgc
     7021 tcgaccggcc accaccacca tctcgtgtgc cgccgctgcg gccggacggt cgaggtcgaa
     7081 ggcgctgccg tcgagacgtg ggccaagtcc gtcagtgccg accacggctt caccgatgtc
     7141 gaccacaccg tcgagatcgt cggactgtgc gccgactgca gcgtccccca gtcgtaaccc
     7201 ctgctaatag agcttcctgc ccgcagcaca cggt
//
LOCUS       DASYFY010000448         1999 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1347191, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000448 DASYFY010000000
VERSION     DASYFY010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347191"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VGN19_09045"
     CDS             <1..643
                     /locus_tag="VGN19_09045"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HEV7196073.1"
                     /translation="THAMFVPGYIEPGGPAPSAGALPKQYWSQVLANFNGAFRLQDSQ
                     GGYFYHGTTVSPLQPGAASAVIYQDGSIRIGQWGRDVSMTPSVVVVRQNLNLIVDGGR
                     SQVTSSYQWGATTHGESLAWRSAIGQRPDGSIVYVGSPGLSAASLADTLVRAGVVRAM
                     VLDMNNWWVAGFYFSHAGDGTPLCAKLDPNIQESCNRFLNRYKRDSFQFLAAP"
     gene            complement(653..1408)
                     /locus_tag="VGN19_09050"
     CDS             complement(653..1408)
                     /locus_tag="VGN19_09050"
                     /EC_number="1.1.1.333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009085878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decaprenylphospho-beta-D-erythro-pentofuranosid-
                     2-ulose 2-reductase"
                     /protein_id="HEV7196074.1"
                     /translation="MNALGEPQSLGVLGGTSQIALAVTAKLCDGRTRTVVLAGRDPSA
                     LEAAQTSAREAGATHVRTLGLDALDTDSHQATVDAMFAEGDLDVALLAFGVLGDQLAA
                     EADPDLAVNVAQVNYVAAVSLGLRVATAMRRQGHGTLVVLSSVAGERARRSNFVYGSS
                     KAGLDAFAQGLGDSLRGTGVRVIIIRPGFVRTRMTTGLPDAPMSVNAADVAAAVEKAL
                     VGSKDIVWVPAGLRVVMSGLRHLPRPVFRRLKI"
     gene            complement(1408..>1999)
                     /locus_tag="VGN19_09055"
     CDS             complement(1408..>1999)
                     /locus_tag="VGN19_09055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="decaprenylphosphoryl-beta-D-ribose oxidase"
                     /protein_id="HEV7196075.1"
                     /translation="RNFAPRAFVSAPSWVPTGLLNRASIVAFNQAWYRKTPRSRNDEL
                     QGIGAFFHPLDGVRSWNRLYGPRGLLQYQCVVPDEGSLRAVLDRISTAQAPSFLTVLK
                     RLGPGTPGPLSFPRPGWTLTLDFPVETPGLSGLLDGLDRIVAGSGGALYLAKDSRMAP
                     DLLAATYPRLAEWSELRDRVDPHRRLRSDQSRRLSL"
BASE COUNT          314 a          695 c          688 g          302 t
ORIGIN      
        1 cacccacgcg atgttcgtcc ccggctacat cgagcccgga ggcccggcac cgtcggccgg
       61 ggcccttccg aagcagtact ggtcgcaggt cctggcgaac ttcaacggtg cgttcaggtt
      121 gcaggactcc cagggcgggt acttctacca cggcacgacg gtttccccgc tgcagcccgg
      181 cgccgcttcg gccgtcatct accaggacgg ctcgatcagg atcggtcagt gggggcgcga
      241 cgtctcgatg acgccctcgg tggtcgtggt gcgccagaac ctcaacttga tcgtggacgg
      301 tggcaggtcg caggtgacgt cgtcctacca gtggggtgca acgacccacg gggagagcct
      361 ggcgtggcgt tccgcgatcg gccagcgccc cgacggcagc atcgtgtacg tcggatctcc
      421 gggtctgtcc gcggcatcgc tggccgacac gttggtgcgc gctggcgtcg tacgcgcgat
      481 ggtgctcgac atgaacaact ggtgggtggc cggcttctac ttcagccacg ccggcgacgg
      541 cactccgctc tgcgcaaagc tggacccgaa catccaggag agctgcaaca ggttcctgaa
      601 ccgctacaag cgcgattcct tccagttcct ggcagcgccc tgacgcgtcg cctcagatct
      661 tgagcctgcg gaagaccggc cgcggcaggt gccgcaaccc ggacatgacc acccgaagcc
      721 ccgccgggac ccagacgatg tccttggagc ccaccagggc cttctcgacg gcggcggcga
      781 cgtctgcggc gttgaccgac atcggcgcgt ccggcaggcc ggtggtcatc cgggtccgta
      841 cgaagccggg acggatgatg atgacccgta ccccggtgcc gcgcagggag tcccccagcc
      901 cctgggcgaa cgcgtcgagg cccgccttgc tcgatccgta gacgaagttc gagcgccgcg
      961 ccctctcacc ggccaccgag gacagcacca ccaacgtgcc gtgtccctga cggcgcatcg
     1021 ccgtcgcgac tcgaagtccc agcgacaccg ctgcgacgta gttcacctgc gcgacgttca
     1081 ccgcgaggtc cggatcggcc tcagcggcca actggtcccc cagcacaccg aacgcgagca
     1141 gggccacgtc aaggtcgcct tcggcgaaca tcgcgtcgac ggtggcctgg tggctgtcgg
     1201 tgtccagcgc gtccaggccg agagtgcgta cgtgcgtcgc gcccgcctcg cgcgccgagg
     1261 tctgcgccgc ctccagcgcc gatggatccc gtccggcgag caccactgtg cgggtacgcc
     1321 cgtcgcacag tttggcggtc acggccagcg cgatctgcga ggttccaccc aggactccga
     1381 gcgactgcgg ctctccgagg gcgttcatca cagcgacagc ctcctggact ggtccgagcg
     1441 gagccggcga tgggggtcga cgcgatcgcg cagctccgac cattcggcca gccgagggta
     1501 cgtggccgcc agcaggtccg gcgccatacg agagtccttg gcgaggtaga gggcgccgcc
     1561 ggagcccgcg acgatcctgt cgaggccgtc gagcaggcca ctcaaacccg gtgtctcgac
     1621 agggaagtca agcgtcagcg tccagccagg ccgggggaac gacagggggc cgggggtgcc
     1681 ggggcccagt cgcttgagga ccgtgaggaa cgacggcgcc tgcgctgtgc tgatccggtc
     1741 gaggaccgcg cgcaggctgc cctcgtcggg tacgacgcac tggtactgca acagccctcg
     1801 cgggccgtac aaccggttcc acgagcggac tccgtccagc gggtggaaga aggctccgat
     1861 tccttgcagc tcgtcgttgc gggaccgggg tgtcttgcgg taccaggcct ggttgaacgc
     1921 gacgatgctg gcccggttca gcagtccggt cggcacccac gatggcgcgc tcacgaaggc
     1981 ccgtggcgcg aagttgcgc
//
LOCUS       DASYFY010000449         1521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_662781, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000449 DASYFY010000000
VERSION     DASYFY010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662781"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VGN19_09060"
     CDS             complement(<1..276)
                     /locus_tag="VGN19_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013116455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196076.1"
                     /translation="MPDQSPTNDPMAAFGPNEWLVDELYEQYQNDRNSVDKAWWSFFE
                     DYHPNGGGETSNGSGSNGVAPAPTATASRTAPPALRPAAPVAPPVAPA"
     gene            605..1081
                     /locus_tag="VGN19_09065"
     CDS             605..1081
                     /locus_tag="VGN19_09065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196077.1"
                     /translation="MRTITRAVGAAATVTASVLLLQTSSLGADARPGRSDASAGAMTF
                     QVKFSPFNYTDLGDPGPSAADVIVFHDELLQSSRHVGDEVGSCVLVDATGLSNCTGVM
                     RLDGRGTITFAFVNAPPPHKVLAVTGGSGAFRTARGDGTLDENGDGTGTLVLRVTR"
     gene            complement(1163..>1521)
                     /locus_tag="VGN19_09070"
     CDS             complement(1163..>1521)
                     /locus_tag="VGN19_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196078.1"
                     /translation="VFRTLALALLVMGLWALIGLGAGILIPNQVAALLISVGVAWIVE
                     PLLVFGLSFWEWGRDNLAPYFPSSATNAMVNGVTQGGTNAVPLLEWWGGALVLAAYAA
                     VLAGFGSWRTVRSDIS"
BASE COUNT          239 a          541 c          528 g          213 t
ORIGIN      
        1 ggccggcgcg acggggggcg caaccggtgc cgccgggcgc agggcaggcg gcgcggtgcg
       61 cgatgcggtc gcggtgggcg cgggggcgac gccgttgctc ccggagccgt tcgaggtttc
      121 accgccgccg ttcgggtggt agtcctcgaa gaacgaccac cacgccttgt ccacggagtt
      181 ccggtcgttc tggtactgct catacaactc gtccacgagc cattcgttcg gcccgaaggc
      241 cgccatgggg tcgttggtcg gggactggtc gggcacggcg gatacgcctc tttcgtagcg
      301 tcgacaatga cggagcaaac aggtgctctc agactagccc cgcgctggtg cccgtgctgc
      361 ggcgggcggg caggttccgg tggccatgct ccgcccgcca ccagcccgga tgccgcgcga
      421 tgccgcgcgc ccggcgcggc atccgatcga ccgccactcg tgctcaccgc agctcgatga
      481 cctccggtga gagcccgtcc cgaccggtcg ccaacccacg ccaactacgc caaacacgcg
      541 atgcgctggg ctgccgggtc gaacgagggt gggttgtccc ttccgcaccg aatgaggagt
      601 agccatgcgc accatcacca gagccgtggg agccgcagcc accgtgaccg catcagtcct
      661 gctgctgcag acgtccagcc tgggtgcaga cgcccgccca ggacgcagtg acgcctcggc
      721 cggggcgatg accttccagg tgaagttcag tcccttcaac tacaccgacc tcggcgaccc
      781 cggaccgtca gcggccgacg tcatcgtctt ccacgacgag ctgctccaga gctcccggca
      841 cgtcggtgac gaggtcggga gctgtgtcct cgtcgacgcg accggcctgt ccaactgcac
      901 cggcgtcatg cggctcgacg gccggggcac gatcaccttc gccttcgtca acgccccgcc
      961 gccgcacaag gtgctggccg tgacgggagg ttcgggggcc ttccgcaccg cccgtggtga
     1021 cggaacgctc gacgagaacg gtgacggcac ggggaccctc gtgctgcgcg tcacgcgata
     1081 gccagcacgt atgccgcggg gccggcccct gcccgatgac ggttctgggg gccggccccg
     1141 cgatgcgtgc gcgggggtgc gctcagctga tgtcgctgcg caccgtccgc cacgacccga
     1201 agcccgcgag gacggcggca tacgcggcga gcacgagggc accaccccac cactcgagca
     1261 gtggcacggc attggtcccg ccctgggtca ccccgttgac catggcgttc gtggccgagg
     1321 aggggaagta gggagcgagg ttgtcgcggc cccactccca gaagctgagg ccgaacacca
     1381 ggagcggctc gacgatccac gcgacgccga cagagatgag cagggcggcg acctggttcg
     1441 ggatcaggat tcccgcgccg aggcctatca gggcccacaa ccccatcacg agcagggcca
     1501 gtgccagcgt ccggaagacc t
//
LOCUS       DASYFY010000450         1839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1503741, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000450 DASYFY010000000
VERSION     DASYFY010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1503741"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..710
                     /locus_tag="VGN19_09075"
     CDS             <1..710
                     /locus_tag="VGN19_09075"
                     /inference="COORDINATES: protein motif:HMM:NF021615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase
                     membrane domain-containing protein"
                     /protein_id="HEV7196079.1"
                     /translation="GIIITSSALTGMLAYPVGEAVLGRKPTLGETWTRTRRMIPRLAG
                     LCLVLVVPVLLAFGALVALAIWGFSNNSAAGGAVAVVALIVGGVAAFWATVRLSFATP
                     ALVLEDLAVFAALRRSWALTLGRFWRIVGVLIVAGLIASIAQQAIGLGFQVVGALLGF
                     GVGWTTSGSASGQTVVIIGMGVSVVGSLIAGLLTQPFIAAVATLLYTDARIRSEGFDL
                     ALLRAVTGVQQGTVATG"
     gene            707..1411
                     /locus_tag="VGN19_09080"
     CDS             707..1411
                     /locus_tag="VGN19_09080"
                     /inference="COORDINATES: protein motif:HMM:NF024948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4129 domain-containing protein"
                     /protein_id="HEV7196080.1"
                     /translation="MSFAGRVGAAPTRLDPNNDQARSWLLHELAKPPYRDTRDPLTRA
                     LQALEDWLVNLLSGRHLQVHPLPTIVAVLVAVLLVVLLAYLMRFVRRTARGPQTTSPT
                     VLGDERLSADQYRGRARSAFDEQRYAECVLDVLRAIAQGAVERTLLDDAPSLTAHEIG
                     TRLSAVFPTASAELHWAADRFDAVAYGSQAPPRTDAARLLELDRLLTDLRPARLGQSS
                     TPQVDARSDVPAEVGR"
     gene            1537..>1839
                     /locus_tag="VGN19_09085"
     CDS             1537..>1839
                     /locus_tag="VGN19_09085"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HEV7196081.1"
                     /translation="MASIVVALVVGSVWMALSNAAYRGVPLDPGNPGGEGGQALARVL
                     DDHGVAVTVVRDQRALLDTPAPRTGTTVVVTGTDVLSAQNARTMLNRVRGAHRLVLV"
BASE COUNT          226 a          695 c          622 g          296 t
ORIGIN      
        1 tcggcatcat catcacctcg tctgcgttga ccggcatgct cgcctacccc gtcggggagg
       61 cggtgctcgg ccgcaagccc accctcggcg agacctggac gcgcacccgg cgcatgatcc
      121 ctcggctcgc cggactctgc ctcgtcctgg tcgtcccggt cctgctcgcc ttcggcgccc
      181 tggtcgcgct ggcgatctgg gggttctcga acaactccgc ggcaggcggc gcggttgccg
      241 tcgtcgcgct catcgtcggt ggggtggccg cgttctgggc gaccgtgcga ctgtcgttcg
      301 cgaccccagc gctggtcctc gaggacctcg cggtgttcgc cgctctgcgc cgatcctggg
      361 ccctcacgct cggacggttc tggcgcatcg tgggcgtgct gatcgtggcg ggcctcatcg
      421 ccagcatcgc ccagcaggcc atcggcctcg gcttccaagt ggtgggggcg ctgctcgggt
      481 tcggtgtggg gtggaccacg agtgggtcgg catctgggca gaccgtggtg atcatcggta
      541 tgggtgtgtc cgtcgtcggt tccctcatcg ccgggctgct cacccaaccc ttcatcgccg
      601 ccgtcgcaac cctcctgtac accgatgccc ggattcgcag tgagggcttc gatctggccc
      661 tgctacgcgc cgtgaccggg gtgcagcagg gcacggtggc gaccgggtga gcttcgccgg
      721 ccgggtcggc gccgcgccca cccgtctcga cccgaacaac gaccaggccc gctcgtggct
      781 tctgcacgag ctcgccaagc cgccgtaccg cgacacgcgt gacccgctca cccgcgcgct
      841 ccaggcgctg gaggactggc tggtcaacct cctgagcggc cgccacctgc aggtgcaccc
      901 cttgccgacc attgtcgccg tcctcgtcgc ggtcctgctg gtggtcctgc tcgcctacct
      961 gatgcggttc gtgcgtcgca ccgcgcgcgg gccccagacc acctcaccca ccgtcctcgg
     1021 tgacgagcgg ctcagcgccg accagtaccg cgggcgggcc cgtagcgcct tcgacgagca
     1081 gcggtatgcc gagtgcgtcc tggacgtgct gcgcgccatc gcgcaggggg ccgtggagcg
     1141 cacgctcctc gacgacgcgc cctccctgac cgcgcatgag atcggcaccc gcctctcagc
     1201 tgtcttcccg acggcgtccg ccgaacttca ctgggcggcg gaccggttcg atgcggtggc
     1261 ctacggcagc caggcgcccc cccggaccga cgccgctcgg ctgctcgagc tcgaccgact
     1321 cctcaccgac ctgcggcccg cccggctggg ccagtcctcg accccgcagg tcgacgcccg
     1381 ctccgacgtg ccggcggagg tcggccgatg accctcgagg tgtgggaacg agccagccac
     1441 gacagcgaca ccccaacgac gggcggcggt tcgcacgcgt ccggcgcccc ccgatcgcgt
     1501 cgaaaagggt tacgccccag acttttctgg accgcagtgg caagcatcgt ggtggccctc
     1561 gtcgtcgggt cggtctggat ggccctgagc aacgcggcat accgcggagt tcctctggac
     1621 cctggcaacc ccgggggcga aggcggccag gcactggccc gggtgctcga cgaccacggg
     1681 gtggcggtca ccgtggtccg cgaccagcgt gccctgctcg acaccccggc cccccgtacc
     1741 ggaacgaccg tcgtcgtgac gggaacggac gtgctgtccg cgcagaacgc tcggacgatg
     1801 ctgaacaggg tccgaggcgc ccaccgcctc gtgctggtc
//
LOCUS       DASYFY010000451         1561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_925091, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000451 DASYFY010000000
VERSION     DASYFY010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_925091"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..665
                     /locus_tag="VGN19_09090"
     CDS             <1..665
                     /locus_tag="VGN19_09090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEV7196082.1"
                     /translation="RIVLNTQRDTSGQIKTFASNFADLTQTLKTSDPDLRLILDRGAV
                     ASQELQALIRDNQGNLAALIANLITVGQVTTSHVAGIQQLLVTYPDVVAGGYTVVPGD
                     GSAHFGLAMAQNPPVCNQGYGGTVHRSPQDTSRGTTNDAARCTLPRGSAASVRGAQNA
                     PGPSGSPNSTMPLAFGDQPVSPGLAASLGMATPQVSVPLPPTGGESGDSSWLWIMKEA
                     AG"
     gene            662..1270
                     /locus_tag="VGN19_09095"
     CDS             662..1270
                     /locus_tag="VGN19_09095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196083.1"
                     /translation="MSTITTHAGRAVKADDEMAGTALAADTQEAPQGRGRGAVAALRV
                     TSTMVWMLAALALIASLALGATRGRDWYAARQTAQANAAALAAAKQVAVNFVTVDYTK
                     VDADTAMVKAGATGQFLTSYSSSVNDLKKVLVANKTQSSVSRIEVALVSGTQNSAITL
                     VGVVAPTKNSSVPNGETKTYRMRLELRLVGQTWKVENLEFVG"
     gene            1254..>1561
                     /locus_tag="VGN19_09100"
     CDS             1254..>1561
                     /locus_tag="VGN19_09100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196084.1"
                     /translation="MSSSANRPRRPVAGERARSRSATPPAKVPATSPAPLSAESPVES
                     PVESPVESSASGRRFTRLSRLPRWTPPAGAATRRQWVAAGAALVASLVVLGVLLGLTW
                     R"
BASE COUNT          241 a          570 c          511 g          239 t
ORIGIN      
        1 gccgcatcgt gctcaacacg cagcgcgaca cgtccggtca gatcaagacc ttcgcgagca
       61 acttcgccga tctgacccag acgctcaaga cctcggaccc cgacctgcgg ctcatcctcg
      121 atcgaggagc cgtggcctcc caggagctgc aggccctcat ccgggacaac cagggcaacc
      181 tggcggccct cattgccaac ctcatcacgg tcggccaggt gaccacctcg catgtggccg
      241 ggatccagca gctgctggtc acctatcccg atgtcgtcgc gggcggctac acggtcgtcc
      301 cgggcgacgg gtcggcccac ttcggcctcg ccatggcgca gaacccaccg gtgtgcaacc
      361 agggctacgg cgggacggtc caccgcagcc cgcaggacac cagccggggg acgacgaacg
      421 acgctgctcg atgcaccctg ccccgcggct cagcggctag tgtgcgaggt gcccagaatg
      481 cacctgggcc ctctggcagc cccaacagca ccatgcccct ggcattcggc gaccagcccg
      541 tatccccagg cttggccgcg tcgttgggca tggcaacacc acaggtatcg gtgccacttc
      601 ctcccaccgg gggtgaaagc ggcgactcct cgtggttgtg gatcatgaag gaggctgctg
      661 gatgagcacg atcaccaccc acgccgggcg ggcggtgaag gcggacgacg agatggcggg
      721 tacggccttg gctgccgaca cacaggaagc cccacagggc cgaggtcgtg gcgccgtggc
      781 ggctctgcgc gtgacgtcca cgatggtgtg gatgctcgct gcgctggccc ttatcgcctc
      841 gctcgccctg ggcgcgaccc gcggtcgtga ctggtatgcc gcgcggcaga ccgcccaggc
      901 caacgcggcg gcgctcgcgg ccgccaagca ggtcgccgtg aacttcgtga ccgtcgacta
      961 caccaaggtc gatgcggaca ccgcgatggt gaaggccggc gccacagggc agttcctcac
     1021 gagctactcc tcctcggtca acgacctcaa gaaggtcctg gtcgccaaca agacccagtc
     1081 gtcggtcagc cggatcgagg tcgctctcgt ctcgggcacc cagaactcgg cgatcaccct
     1141 ggtcggtgtc gtggccccca cgaagaactc ctccgtgccc aacggtgaga ccaagaccta
     1201 ccggatgcgc cttgagctgc gcctggtcgg gcagacctgg aaggtggaga accttgagtt
     1261 cgtcggctaa ccgcccccgt cgcccggtcg cgggcgagcg ggctcgctcc cgttccgcca
     1321 cacctcccgc caaggtcccg gccacctcgc cggcgccact gtcggctgag tcgcctgtcg
     1381 agtcgcctgt cgagtcgccc gttgagtcgt cggcgtctgg ccgacgcttc acccgcctct
     1441 cgcggctgcc gcgctggacg ccgccggcgg gtgcggcgac ccgccgccag tgggtggccg
     1501 ctggggctgc tctggtcgcc agcctcgtgg tgctgggcgt cctacttggc ctgacctggc
     1561 g
//
LOCUS       DASYFY010000452         3150 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_452523, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000452 DASYFY010000000
VERSION     DASYFY010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3150
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452523"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1255)
                     /locus_tag="VGN19_09105"
     CDS             complement(<1..1255)
                     /locus_tag="VGN19_09105"
                     /inference="COORDINATES: protein motif:HMM:NF014215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7196085.1"
                     /translation="MPRPTPSPAAPASSSARASSSARAAALAALAAASLAALALPMGA
                     GLASAAGSTTTSTLDTVDTYTGLHFVVPAGTNDLGQPQTCTIDADLYKPHSASPASRV
                     PSILTTNGFGGSKADQAGLGQAFAKRGYTVLSYTGLGFPNSGCKISLDDPGRDGVAAS
                     ALVTYLGGGGSAPYASSSVGGVSAGAGTLTVDFTKLDNAATHDPRIGMIGGSYGGQIQ
                     FAAAAVDKRIDTLVPLITWNDLRYSLAPNNTSFTRGVTYADSNPGTEKMGWTDLFFGV
                     GIADGLQGASIDPTRNVGCPNFVLEACQAKATLDSLGYPTADTYALTNRVSVGHYLNR
                     VTVPTFLIQGENDTLFNLQEAAATYRGFKARGVPVSMAWQSWGHSGGVNGNSGAAPGE
                     LDLTGQHIEDTYLGLRIKNWFDHYLK"
     gene            1431..2447
                     /locus_tag="VGN19_09110"
     CDS             1431..2447
                     /locus_tag="VGN19_09110"
                     /inference="COORDINATES: protein motif:HMM:NF022702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3048 domain-containing protein"
                     /protein_id="HEV7196086.1"
                     /translation="MSSHAHRTLGGLAVCLTAIAVVAGCSGKPAAAPRHTSTTTTTTA
                     APSPKPTPSLPGVPLTGGPVLAVKIDNTPAGRPRIGLDQADVVYVEPVEGGLTRLMAV
                     FSRHLPPLVGPVRSGRETDKDLLANYGPVALAYSGASSYTIGVLATGHQVNVVFDYGS
                     RGFYRDYSRPAPYNVIGNTAQLLARAGGGVRPRDIGFRYGSATSPGAPATSVVASWPS
                     STEELVWNPARKEYLVTSNGQSDISPTGRQYGATTVVVQYVQTHLTPNRDVNGVQTPL
                     ADVIGTGAATVLRDGRVWRGTWSRTSALVPTAFTAAGTRVTFAPTGTVWVLLVSAGDT
                     VSVR"
     gene            2628..>3150
                     /locus_tag="VGN19_09115"
     CDS             2628..>3150
                     /locus_tag="VGN19_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEV7196087.1"
                     /translation="MDLFEYQARDMFEAHGVPVLAGAIATTPEQARAAAEEIGPKSGG
                     VTVVKAQVKAGGRGKAGGVKVVKSADEAAEAARAILGMDIKGHTVGTVMVAQGARIAE
                     EYYFSILLDRANRSYLAMCSKEGGMEIEQLAVERPDALARVEVDPNTGIDEAKAREIV
                     ETAGFDAETGAKIV"
BASE COUNT          472 a         1065 c         1124 g          489 t
ORIGIN      
        1 ccttgaggta gtggtcgaac cagttcttga tccgtaggcc gaggtaggtg tcctcgatgt
       61 gctggccggt caggtcgagc tcgccggggg ccgcgccgct gttgccgttg acgccgccgg
      121 agtgtcccca cgactgccag gccatcgaca ccggcacgcc ccgagccttg aagccccgat
      181 aggtcgccgc ggcctcctgg aggttgaaca acgtgtcgtt ctcaccctgg atgaggaagg
      241 tcgggaccgt gacccggttg aggtagtgcc cgacggagac ccggttcgtc agggcgtagg
      301 tgtccgctgt cgggtagccc aggctgtcga gggtggcctt ggcctggcac gcttccagga
      361 cgaagttcgg gcagccgaca ttgcgggtcg ggtcgatcga ggcaccctga agcccgtccg
      421 cgatgcccac accgaagaac aggtcggtcc agcccatctt ctcggtgccg gggttggagt
      481 cggcatacgt cacgccgcgg gtgaagctgg tgttgttggg agccaacgag tagcgcaggt
      541 cgttccaggt gatcaggggc acgagggtgt cgatgcgctt gtcgactgct gcggcggcga
      601 actggatctg cccgccgtag gacccgccga tcatcccgat ccgtgggtca tgggtcgcgg
      661 cgttgtccag cttggtgaag tcgacggtca aggtgcctgc gcctgcgctg accccaccca
      721 ccgaggagga ggcatacggg gcggacccac cgccacccag gtacgtcacc agggcgctcg
      781 cggccacgcc gtcgcgaccc gggtcgtcca gcgagatctt gcagccgctg ttggggaagc
      841 cgaggccggt gtacgacagc acggtgtacc cgcgcttggc gaacgcctgg ccgagccccg
      901 cctggtcggc cttgctgccg ccgaagccgt tcgtcgtgag gatcgacggc acgcgggacg
      961 ccgggctggc gctgtggggc ttgtagaggt cggcgtcgat cgtgcaggtc tgcggctggc
     1021 ccaggtcgtt cgtgccggcg ggaaccacga agtgcagtcc ggtgtaggtg tccaccgtgt
     1081 ccagggtgga ggtcgtggtc gatcccgctg cgctggccag gccggcgccc atcgggaggg
     1141 ccaacgcggc aaggcttgcg gcggccaggg cggccagggc ggcggctcgg gcggagctcg
     1201 aggctcgggc ggagctcgag gctggggcgg ctggggacgg ggtcgggcgc ggcatgggac
     1261 ctccagtcag gtcgaggtcc accgtcgttg gtcgaccccg ttccccctgg taacgaggtg
     1321 ggctgggctg ggttacgtat cagtaaccca gcaacggcgg cccagcccga caccccggcg
     1381 ctgatcgcca atgcgggcct gggttgggca agcagttcta tcctcggcgc atgtcgtccc
     1441 acgcccaccg gactctgggc ggcctcgcgg tctgcctgac cgccatcgcc gttgtcgctg
     1501 gatgctcggg gaagcctgca gcggcccctc gccacacgtc gacgaccacg accacgacgg
     1561 cagcaccgtc gccaaagccc acgcccagtc tccccggcgt cccgctgacg ggcggcccgg
     1621 tgctggcagt caagatcgac aacacccctg ctggccgacc gcgcatcggg ctggaccagg
     1681 ccgacgtggt ctacgtcgag ccggtcgagg ggggtctgac ccgcctcatg gcggtcttca
     1741 gccggcactt gccgccgctc gtgggtccgg tgcgctcggg tcgcgagacc gacaaggatc
     1801 ttctcgccaa ctacggaccc gtcgccttgg cctactcggg agcctcgagc tacacgatcg
     1861 gggtactggc cacgggtcat caggtcaacg tcgtcttcga ctacggctcc cgaggtttct
     1921 atcgcgacta ctcgcgcccc gctccctaca acgtcatcgg caacaccgcc cagctgctcg
     1981 ctcgggccgg cggcggcgta cgcccccgcg acatcggctt ccggtacggg tcggcgacct
     2041 ctccgggcgc gcccgccacg tcggtggtcg cgtcctggcc ctcctcgacg gaggagctgg
     2101 tctggaaccc agcgcgcaag gagtacctgg tgaccagcaa cggccagagc gacatcagtc
     2161 ccaccggccg gcagtacggc gccacgaccg tggtcgtcca gtacgtccag acgcacctga
     2221 cgcccaaccg cgacgtcaac ggggtgcaga cgccgctcgc ggatgtcatc ggcaccggcg
     2281 cggcgacggt tctgcgggac ggacgggtct ggcggggcac ctggtcgcgg acctccgccc
     2341 tggtgcccac ggcgttcacc gccgcaggca cgagggtcac gttcgcgccg acgggcacgg
     2401 tctgggtgct cctggtgagt gccggcgaca ccgtcagcgt gcgctgacgg cctgagccca
     2461 tcgtcgaggc cacggccgcg ctcacactct ctgtcggagt ctctgtgaga gtcacggtga
     2521 gattggtccc attgagctgt gcgcccggta cccgcgggca tccgcacgcc gcgagagggc
     2581 tagtctcggg cacgaaccac tcccttccgt agacgaggac gtcagacgtg gatctgttcg
     2641 aataccaggc gcgcgacatg ttcgaggcgc acggcgtgcc ggtgctcgcc ggcgccattg
     2701 ccaccactcc cgagcaggct cgcgcggccg ccgaggagat cggccccaag agcggcgggg
     2761 tcaccgtcgt gaaggctcag gtcaaggccg ggggtcgcgg caaggccggc ggcgtgaagg
     2821 tcgtgaagag cgctgacgag gcagccgaag ccgccagagc gattcttggc atggacatca
     2881 agggccacac cgtcggcacc gtcatggtgg cccagggcgc ccgcatcgcc gaggagtact
     2941 acttctcgat cctgctggac cgtgccaacc gctcgtacct tgccatgtgc agcaaggagg
     3001 gcggcatgga gatcgagcag ctcgccgtcg agcgtcccga tgcgctggcc cgggtcgagg
     3061 tcgaccccaa caccggcatc gacgaggcga aggcccgcga gatcgtcgag accgcaggct
     3121 tcgacgccga gaccggcgcc aagatcgtgc
//
LOCUS       DASYFY010000453         5971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_347042, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000453 DASYFY010000000
VERSION     DASYFY010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5971
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347042"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..794
                     /locus_tag="VGN19_09120"
     CDS             <1..794
                     /locus_tag="VGN19_09120"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEV7196088.1"
                     /translation="SLLAAIADFADLKCPFTVGHSRAVAELGAAAATQLGLTRVDVDR
                     VRRAALVHDLGRMGVPNSIWEKTPSLTESDRERIRLYPYLTGRILNRVGGLGAVAAIA
                     ETHRERLDGSGYPRGLSGSALPMTQRILAAADSYRGSLEHRPHRPALGSEQAAVRLRA
                     EAAAGRLDASAVEAVLAVAGHQGGRRASGPAGLTAREVEVLGLLSRGLSSPEIARRLV
                     ISTKTVRNHLEHIYLKAGVTNRTGAALFALEHGLAGSAEDGAAAP"
     gene            869..1234
                     /locus_tag="VGN19_09125"
     CDS             869..1234
                     /locus_tag="VGN19_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEV7196089.1"
                     /translation="MKTKSVVSLTTGLEDAEKVTVAFLVAVGSAESQRPTLMFLTKEA
                     VRLVTGDVARGTACEGCPPLEDLMGRYAAAGGRFLACPICFDARHLDKGDLVPNAELG
                     GTVPMWGWIGDEAANTFSY"
     gene            1206..1595
                     /locus_tag="VGN19_09130"
     CDS             1206..1595
                     /locus_tag="VGN19_09130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196090.1"
                     /translation="MRQPTRSVTDRTLGAQLACAIAAKDAAALRDLFSTPVTFRAVTP
                     RRFWDAETPQEVADIALGSWFGPDRTVTEVCTIVIDTVGDVAKVSYRLAVDLESGPCV
                     VEQVAYYTEQDGKITQLRLVCSGFRPI"
     gene            complement(1631..2314)
                     /locus_tag="VGN19_09135"
     CDS             complement(1631..2314)
                     /locus_tag="VGN19_09135"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196091.1"
                     /translation="MNQDNGTPNAPAVDGAQPIRVLIVDDHEVLSASLAHVLDGEADI
                     VAVGQAATLAQARARIVSASPDVLILDRRLPDGDGVDALAELKSLRPRMNVLVLTAAS
                     SDDVLVRALEAGAAGFLSKTRSLAEVTTAVRTANQGEVSISPEMLARLLPKLTRVPGP
                     DPALTRREQEVLGMLAHGLSNAAIAAELSVSVNTVRNHVANLSAKLGAHSKLEAMSIA
                     IQRGLLSGP"
     gene            2489..2929
                     /locus_tag="VGN19_09140"
     CDS             2489..2929
                     /locus_tag="VGN19_09140"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196092.1"
                     /translation="MSQVRVLIADDHPQMLSALVSALETDGRFVVVATATTGREAVRL
                     AGELSIDVALLDVRMPAGGPSAVAEMARLTPPPVIVAISADTHASTVAAIVSAGATGY
                     LAKGRIGERLPEVVARCAQGEVILATTSGAEAMRWVLTGRSPRV"
     gene            3020..3799
                     /locus_tag="VGN19_09145"
     CDS             3020..3799
                     /locus_tag="VGN19_09145"
                     /inference="COORDINATES: protein motif:HMM:NF014089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIM24 family protein"
                     /protein_id="HEV7196093.1"
                     /translation="MPTPVLHPSTVLEGSGPGVGYRIEGELVPVLHLALNGQVPVYFE
                     HHVVLWKQPAVEVALHPMKGAFKRAIGGLPIFMTEARGAGEIAFSRDTPGQIIPMPLA
                     AGQEILVREHQFLAATATVDYSFERIKGLGSMMFGSQGFFQDTFTANQHGGVVWLHGH
                     GNVFDITLAEGETIDVEPGSWVYRDRTVGYQQKVFGLKMGIFGGGGNLVFNRFTGPGR
                     VGLQSGFYGLGESGSVGGSDNTGTALGAGAVGAAIGSILRG"
     gene            complement(3819..4937)
                     /locus_tag="VGN19_09150"
     CDS             complement(3819..4937)
                     /locus_tag="VGN19_09150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018772770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEV7196094.1"
                     /translation="MKIIGAVLEATGMPAPYAASRPIRLDELDLEAPRRTELLVELEC
                     AGLCHSDLSVVNGTRARPVPMLLGHEASGIVRQVGAEVTDLQEGQRVVMTFLPRCGRC
                     TACATDGRLPCVEGSRANTEGTLLGGGVRLARAGTPVLHHLGVSAFATHAVVDRRSVV
                     PVDDDVPAEVAAVLGCAVLTGGGAVLNAGRLRPGQSVAVVGLGGVGMAALLTALATGD
                     NEVVGIDTIPEKLAQATALGATHAWTPTQAVDAGFTADVVVEAAGSGRAFEGAVKLTA
                     PGGVTVTVGLPAPTDLSAVSALGLVAEARTIIGSYLGSAVPERDIPRYVALWRAGRLP
                     VESLVSHRITLNDLNEGMDDLAAGRAVRQIIDCAAVLA"
     gene            complement(4934..5371)
                     /locus_tag="VGN19_09155"
     CDS             complement(4934..5371)
                     /locus_tag="VGN19_09155"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEV7196095.1"
                     /translation="MREQYSHWSEVPTRWNDNDVYGHVNNTVHYEAMDTAINRWMIEQ
                     GVLDIHGGSSIGLCVESGCRYLAAVEYPEVLLVGLRIAALGTSSVTWEVGMMRQGDDL
                     PVAEGRFVHVFVDRVTRRPHPIAPALRGAMEGLLASSPGPVEP"
     gene            complement(5368..5739)
                     /locus_tag="VGN19_09160"
     CDS             complement(5368..5739)
                     /locus_tag="VGN19_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020013716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7196096.1"
                     /translation="MTVDLFAGIPVSDYERAIAWYRLLLGAEPTFLPNATEAVWELAE
                     HRYLYVELLPERAGHALQTLFVDDLEERVAGISARGVEPDTAQAYDNGVRKVIYRDPD
                     GNEIGFGGAAPVSPLTAQGAR"
     gene            complement(5783..>5971)
                     /locus_tag="VGN19_09165"
     CDS             complement(5783..>5971)
                     /locus_tag="VGN19_09165"
                     /inference="COORDINATES: protein motif:HMM:NF028226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter dimerization
                     domain-containing protein"
                     /protein_id="HEV7196097.1"
                     /translation="RDLRIRWIGHTLRAEADVVVDARLSVGEGHDLAHHAEEHLLAYV
                     RRLTAATIHVSPSDAHTA"
BASE COUNT          925 a         2123 c         2024 g          899 t
ORIGIN      
        1 actcgttgct cgcagccatc gccgacttcg ccgacctcaa atgcccgttc accgtcgggc
       61 actcacgcgc ggtagccgag ctgggtgcgg ctgccgcgac gcagctgggc ctcacccgcg
      121 tcgacgtcga ccgcgtccgg cgggccgcgc tggtgcacga tctcggtcga atgggcgtcc
      181 cgaactccat ctgggagaag actccctcgc tcaccgagtc cgaccgggaa cggatccggc
      241 tctacccgta cctgaccggg cgcatcctga accgggtcgg cggcctcggg gccgtggcgg
      301 ccatcgccga gacccaccgc gagcgtctcg acgggtcggg ctacccgcgg ggcctcagtg
      361 gctcggcgct ccccatgacc cagcggatcc tggcggcagc cgacagctac cgcggatcgc
      421 tggaacaccg gccacaccga ccggcgctgg gctccgagca ggccgccgtc cgactgcgcg
      481 ccgaggcagc ggctggacgg ctcgacgcat cggccgtgga ggcggtactc gcggtcgccg
      541 ggcaccaggg cggccgtcgc gcatcagggc ccgccggcct cacggcccgt gaggtggagg
      601 ttctcggcct cctctcccgc gggctgagca gccccgagat cgcccggcgc ctggtcatca
      661 gcaccaagac cgtgcgcaac cacctcgagc acatctatct caaggcgggc gtcaccaacc
      721 gcacaggcgc cgccttgttc gccctcgagc acggcctcgc cggctccgcg gaagatgggg
      781 cagctgcccc atgaccgctg gctcctgatc gcggcacgat cgctggatcg tcatgatcgc
      841 gatgagcgcg atgagcgaag gaggcccgat gaagaccaag tcagttgtca gcctgaccac
      901 cggactggag gacgccgaga aggtcaccgt ggccttcctc gtggcagtgg ggtccgccga
      961 gtcgcagcgc cccaccctga tgttcctgac caaggaagcc gtccgactcg tcaccggcga
     1021 cgtggcgagg ggcaccgcgt gcgagggatg tccgccgctg gaggacctga tgggcaggta
     1081 tgccgccgca ggtggccgtt tcctggcctg cccgatctgc ttcgacgcca ggcacctcga
     1141 caagggcgac ctggtaccca acgccgagct gggtggcacg gtcccgatgt gggggtggat
     1201 cggcgatgag gcagccaaca cgttcagtta ctgaccgcac gctcggtgcg cagctggcct
     1261 gcgcgattgc ggccaaggac gccgccgcgc ttcgggacct gttctctacc ccggtcacgt
     1321 tccgggccgt caccccgcgc cggttctggg acgccgaaac gccgcaggag gtggccgaca
     1381 tagccctggg cagctggttc ggtccggaca ggacggtcac cgaggtctgc acgatcgtca
     1441 tcgacacggt cggcgatgtc gcgaaggtca gctatcggtt ggctgtcgac ctggaatcgg
     1501 gtccctgcgt cgtcgagcag gtggcgtact acaccgaaca ggacggcaag atcacacagc
     1561 tgcggctggt ctgcagcggc ttccgtccca tctgacgttg atcgaacgac gacgaccgaa
     1621 cacagcagcg tcagggaccg gagagcaacc cgcgttggat cgcgatggac atcgcctcga
     1681 gcttgctgtg cgcgccgagc ttggccgaga ggttggcgac gtggttacgc accgtgttga
     1741 cactgacgct gagctcggcg gcgatcgcgg cgttggacag cccatgggcg agcatgccca
     1801 gcacctcttg ttctcgacgg gtcagcgccg gatcgggccc gggcacccgg gtcagcttgg
     1861 gcagcagccg cgccaacatc tccggggaga tgctcacctc accctgattt gcggtgcgga
     1921 ccgcggtggt tacctcggcg aggcttcggg tcttcgacag gaacccggcc gccccagcct
     1981 ccagggcgcg aaccaggacg tcgtccgagc tcgcggcggt cagcacgagg acgttcatgc
     2041 ggggtcgcag cgacttgagc tcggcgagcg cgtcgacgcc gtcgccatca ggcaacctgc
     2101 ggtccaggat cagcacgtcg ggcgacgcgg acacgatccg ggcgcgcgcc tgtgccagcg
     2161 tcgcggcctg accgacagcg acgatgtcgg cttcgccatc caggacatgg gccaggctgg
     2221 ccgagagcac ctcgtggtca tcgacgatga gcacgcggat cggctgcgcg ccgtcgaccg
     2281 ccggcgcatt cggggtccca ttgtcttggt tcactgcacg tcctggttca cagctcggcc
     2341 tggttcacag ccggtccttg ctcacggccg cacctctcgg cctagtatcc acgcactacc
     2401 gtgccacccg caccagcacc agtccctacg tgaccgcccg gccgcatgat ggatctgtcg
     2461 accaacccat ccaaggtcag gcaggcccgt gtcccaggtc cgtgtcctca ttgccgacga
     2521 ccatccacag atgctttcgg ctctggtcag cgcgctcgag accgacggcc gtttcgtcgt
     2581 ggtcgcgacc gcgaccacgg gacgggaggc ggtacgactg gccggcgagc tgtccatcga
     2641 cgtggccctg ctcgatgtgc gtatgccggc tggagggccc tcggcggtcg ccgagatggc
     2701 gaggctgacg ccgccccccg tcatcgtcgc catctcggcc gacacgcatg cgagcacggt
     2761 cgcggcgatc gtcagcgccg gcgcgacggg gtacctggcc aagggtcgca tcggggagcg
     2821 actgccagag gtggtcgcgc gctgcgccca gggcgaggtc atcctggcca ccaccagcgg
     2881 cgccgaggcg atgcgctggg tgctgaccgg gcgcagtccc cgggtctgaa ttccctccgg
     2941 gcgcctcgat tgtttggcac agtggcaact gcctgcactg atcgccggca cgtccgccct
     3001 accgaggagc acgcacccca tgcctacccc tgtcctgcac cccagcaccg tcctcgaagg
     3061 cagcggcccc ggagtcgggt accgcatcga gggcgagctc gttcccgtcc tgcatctcgc
     3121 actcaacggc caggtgccgg tgtacttcga gcaccacgtc gtgctgtgga aacaacctgc
     3181 ggtcgaggtg gctctgcacc ccatgaaggg ggccttcaaa cgcgcgatcg ggggcctgcc
     3241 gatcttcatg accgaggccc gcggcgccgg cgagatcgcc ttcagccggg acaccccggg
     3301 gcagatcatc ccgatgcccc tcgccgccgg tcaggagatc ctcgtccgcg agcaccagtt
     3361 cctcgccgcg acggccacgg tcgactacag cttcgagcgg atcaagggcc tcggctcgat
     3421 gatgttcggc tcccaggggt tcttccagga caccttcacc gccaaccagc acgggggcgt
     3481 ggtgtggctc catggtcacg gcaacgtgtt cgacatcacc cttgccgagg gcgagacgat
     3541 cgatgtcgaa ccgggctcgt gggtctaccg cgaccgcacg gtcggatacc agcagaaggt
     3601 cttcggactc aagatgggga tcttcggtgg tggcgggaac ctggtcttca accggttcac
     3661 cggaccgggc cgggtcggcc tgcagtccgg gttctacggg ctgggcgagt cggggtcggt
     3721 cggcggatcg gacaacaccg gcaccgcgct tggtgccggt gcggtcggcg cagccatcgg
     3781 cagcatcctg cgaggctgac ccgcgccggg cgcagccctc aggcgagcac cgctgcgcag
     3841 tcgatgatct gtcgcacagc gcggcccgcc gccaggtcgt ccataccctc gttgaggtca
     3901 ttcagcgtaa tacggtgcga gaccagggat tccaccggta gccggccggc tcgccacagc
     3961 gcgacgtatc gcggaatgtc gcgctccggc accgccgaac cgaggtagct gccgatgatg
     4021 gtgcgcgcct cggcgaccag ccccagggcg gacaccgcgg agaggtcggt gggcgccggc
     4081 agtccgacgg taaccgtgac cccgcccgga gcggtcagct tcacggcccc ctcgaacgcg
     4141 cggccgctcc cggcggcctc gaccacgacg tcggccgtga acccggcgtc gacggcctgg
     4201 gtaggcgtcc aggcatgggt ggcacccagg gccgtggctt gggcgagctt ctccgggatc
     4261 gtgtcgatgc cgacgacctc gttgtcccct gtcgccaagg ccgtcagcag ggcggccatg
     4321 ccgacgccac ccaacccgac gacggccacg ctctgacccg ggcggaggcg gcccgcattc
     4381 agcaccgcgc ccccaccggt gagcacggcg cagcccagca ccgcggcaac ctcggccggc
     4441 acatcgtcat ccaccggcac caccgacctg cggtccacga ccgcgtgggt ggcgaaggcc
     4501 gagacgccga ggtgatggag cactggcgtc ccggcacggg ccaggcgcac tccgccaccg
     4561 agcagcgtgc cctcggtatt cgccctgctc ccctccacac acggcagtcg cccatccgtg
     4621 gcgcaggccg tgcagcgccc gcaccggggc aggaacgtca tgacgacgcg ctggccctcc
     4681 tgcaggtcgg tcacctcggc accgacctgg cggacgatcc cggaggcctc atgacccagc
     4741 agcatgggca ccggccgggc gcgggtcccg ttgaccaccg agaggtcgga atggcacagg
     4801 cccgcgcact ccagctcaac cagcagctcc gtccgccggg gggcctccag gtcgagctcg
     4861 tcgagccgga tcggtcggga tgcggcatac ggggctggca tcccggtcgc ctccagcacc
     4921 gcaccgatga tcttcacggt tcgaccggtc cgggcgagga tgccagcagg ccttccatcg
     4981 ccccccgcag ggccggggcg atggggtgcg gacgccgggt gacccggtcg acgaagacat
     5041 gcacgaaccg accctcggcg accggcaggt cgtcaccctg gcgcatcatc ccgacctccc
     5101 aggtcacgct cgaggtgccc agagcggcga tgcgcagccc taccagcagc acttcggggt
     5161 actccacggc cgcgagatag cggcagccag actccacaca caagccgatg gacgaccccc
     5221 catggatgtc gagtacgccc tgctcgatca tccaccggtt gatcgccgtg tccatggcct
     5281 cgtagtgcac ggtgttgttc acgtgtccgt agacgtcgtt gtcattccac cgcgtcggca
     5341 cctcggacca gtgcgagtac tgctctctca tcgcgctcct tgtgccgtca acggtgaaac
     5401 cggcgccgcc ccaccgaacc cgatctcgtt gccgtcgggg tcgcggtaga tgaccttacg
     5461 cacgccgttg tcgtaggcct gcgcagtgtc cggctcgacc cccctggcgc tgatgccggc
     5521 gacccgctcc tcgaggtcgt cgacgaagag cgtctgcagg gcgtgccccg cgcgctcggg
     5581 cagcagctcg acatacaggt agcggtgttc ggcgagctcc cacaccgctt cggtggcatt
     5641 gggcaggaac gtcggctcgg cacccagcag cagtcggtac caggcgatgg cgcgctcata
     5701 gtcgctgacc gggatgcccg cgaagaggtc gaccgtcacg cgttcaccgt agcggcggag
     5761 gtgagaatcc gaaggtcgag cgctacgcgg tatgcgcgtc cgaggggctg acgtggatgg
     5821 tggcggcggt cagtcggcgc acgtaggcga gtaggtgttc ctcggcgtga tgggccaggt
     5881 cgtggccctc accgacgctc agccgggcat cgacgacgac gtcggcctcg gcccgcaggg
     5941 tgtgaccgat ccatcggatc ctcaggtcac g
//
LOCUS       DASYFY010000454         5440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1451424, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000454 DASYFY010000000
VERSION     DASYFY010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5440
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1451424"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..718)
                     /locus_tag="VGN19_09170"
     CDS             complement(194..718)
                     /locus_tag="VGN19_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7196098.1"
                     /translation="MSNSTAEPRWLSDDEQRAWRAYLRGSRLIEEALDRDLQSHGVQL
                     TEYEIMSMLSEAPRRRLRMSSLADLVVQSRSRLTHTATRLETRGWVVREACLQDKRGV
                     ELVLTEAGWQAVQEVARVHVESVRRSVIDNVSPALFQALGEAMDAIRGALAPDAGHPA
                     VMQEAEAHESSLTA"
     gene            832..1365
                     /locus_tag="VGN19_09175"
     CDS             832..1365
                     /locus_tag="VGN19_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEV7196099.1"
                     /translation="MASIKDLPAGTWTVDAAHSELGFVARHLMVSKVRGQFKEFEGTV
                     KVGDDVADSQVTAVAQLGSIHTGSADRDAHLKSADFFDVENNPTMSFTSTAVNADSLA
                     GDLTIKGVTKPVVFDLEFNGVATDPWGNQKAGFEASTEINRKDWGLEWNVALEGGGVL
                     VSEKIKINLDIQLLKAA"
     gene            complement(1470..2435)
                     /gene="hemB"
                     /locus_tag="VGN19_09180"
     CDS             complement(1470..2435)
                     /gene="hemB"
                     /locus_tag="VGN19_09180"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEV7196100.1"
                     /translation="MNRPRRLRQSSAIRRLVAETRLHPAELVLPVFVREGISAPVPIE
                     AMPGVVQHTLESLVAQAQAAADAGIGGIMLFGVPRSKDAVGSGADDPDGILNVALRAV
                     AAAVGDRLVVMADLCLDEFTDHGHCGVLDAAGRVDNDATLERYAAMGLAQARAGAHVL
                     GLSGMMDGQVAYVRAALDAEGFTDVVILAYAAKYTSGLYGPFREAVQSSLEGDRATYQ
                     QDPANATEALRELELDIAEGADIVLVKPAMPHLDIVAAAAAMSPVPVAAYQISGEYSM
                     IEAASAQGWIERERAIMESLLNIRRAGAQIILTYYALEAAALLRS"
     gene            complement(2468..4114)
                     /locus_tag="VGN19_09185"
     CDS             complement(2468..4114)
                     /locus_tag="VGN19_09185"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEV7196101.1"
                     /translation="MSPSRSNTTAATNATTTKTTRQPGRVAFVGAGPGDAGLMTVRAV
                     QLLASAQAVVIDQVARESVVDRYCRDDVEVVDAGHGDHGQPLTHAMRAKLVVKAAKAA
                     KGGLVVRLMDGDPSTFNGLAEEALACHKAGIGFDIVPGVSAVSAVPAYAGIPLTSSSS
                     PAVHVISANDRAVDWSASVADSVTVVLLGPPEDLADALAKLLAAGRSADSLVALTEKG
                     TTIAQSTRVSTLGEVAKVMKAVQFPALAVVGSTVALRESLSWFETKPLFGWNILVPRT
                     KEQSGSTITRLESYGATAEVVPTISVEPPRTPQQMERAVKGLVTGRYEWIGFTSVNAV
                     KAVREKFEEFGLDARAFAGLKIAAVGGVTAGALREWGIVPDLVPSGENSANGLLADWP
                     PFDEVLDPINRVFLPRADIATDTLVAGLQAMGWEVDDVTAYRTVRAAPPAAPIREAIK
                     GGQFDAAVFTSSSTVRNLVGIAGKPHPSTIIACIGPATAKTAEEHGLRVDVLAPEASS
                     DSLVDALADFGLGLATAAAEAGEAVVRPSAKKASARRRAK"
     gene            complement(4111..5142)
                     /gene="hemC"
                     /locus_tag="VGN19_09190"
     CDS             complement(4111..5142)
                     /gene="hemC"
                     /locus_tag="VGN19_09190"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009071975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEV7196102.1"
                     /translation="MSATLRLGTRRSALATTQSSWVADQLRALGHKVELVEIVTEGDT
                     SSAPLSILGGNGVFAAALRQALLAGKVDLAVHSLKDLPTWPEPGLVIAAIPPREDPRD
                     VLVSTSGAGLGGLPAGAVVGTGSPRRVAQLAALGLGLEFKDIRGNVDTRIALARDGAV
                     DVVVLARAGLARLGRLADVAEVIDPLQMLPAPGQGALAVECRTDDAATIELLRELDDP
                     DTRAAVTAERALLAALEAGCSAPVGALAEIVEGHDGIELSLRGFVGAVDGSFDLRRSL
                     VGPVEEAESIGRRLAGLLLEDGADRLVSLDHTLDHDHWPPDPPEATGDDPIAAPDRSP
                     APNSTERAP"
     gene            complement(5139..>5440)
                     /locus_tag="VGN19_09195"
     CDS             complement(5139..>5440)
                     /locus_tag="VGN19_09195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEV7196103.1"
                     /translation="SVAPTVAALRSHAADVVAGELTRLDQRLPDLDDQARAEVQLAVH
                     RIVEKLLHTPTVRVKELAVGGQGDDYAQALRQLFDLRPGEAVVSSVPPPERGGLP"
BASE COUNT          856 a         1897 c         1910 g          777 t
ORIGIN      
        1 caccgaccgc ctgaaacgct cgaacgggcg agttcacccc gccaggggtc accgcgagcg
       61 cacgctcgag caggacctgg gaggcggggg cgtcgtaggg ataggccggt gggtgcgcgg
      121 tcatccgact agtgtcccag cccggcctgt gggtcctgtg cggtgggcgg cacgacgggc
      181 cgcgggatgg gtctcaggcc gtcagggacg actcgtgcgc ctcggcctcc tgcatgaccg
      241 ccgggtggcc ggcgtccggg gccagtgcgc cccggatcgc gtccatggcc tctcccaacg
      301 cctggaacag ggccggagaa acgttgtcga tgacgctgcg gcggacgctc tcgacgtgga
      361 cgcgcgcgac ctcctgcacg gcctgccacc cggcctcggt gaggacgagc tccaccccac
      421 gcttgtcctg taggcaggcc tcgcggacca cccagccacg ggtctccaga cgagtggcgg
      481 tgtgggtcag gcggctgcgc gactgcacga ccagatcggc gaggctggac atccgcagcc
      541 tgcgtcgggg ggcctcggag agcatcgaca tgatctcgta ctcggtgagc tggaccccgt
      601 gcgactgcag gtcgcggtcc aacgcctcct cgatcagccg actcccccgc agataggccc
      661 gccaggcccg ctgttcgtcg tcgctgagcc accgtggctc ggcggtgctg ttactcatgg
      721 gtcaagtatg ccatccgtgg acagatagtt gaaatataaa tgataactgc tatgttgaac
      781 ccgatgaagc gcttgggacc gccccggacg cacaccccta ggagacaccc catggcaagc
      841 atcaaggacc ttcccgccgg cacctggacc gtcgacgccg cgcacagcga gctcggcttc
      901 gtcgcccgcc acctgatggt gagcaaggtg cgtggccagt tcaaggagtt cgagggcact
      961 gtcaaggttg gcgacgacgt cgccgactcg caggtcaccg cggtggccca gctcggctcc
     1021 atccacaccg gctccgcgga ccgtgacgcc cacctgaagt cggctgactt cttcgacgtc
     1081 gagaacaacc ccaccatgag cttcacctcc accgcggtga acgccgactc cctggccggc
     1141 gacctgacca tcaagggcgt caccaagccc gtcgtgttcg acctggagtt caacggcgtc
     1201 gccaccgacc cgtggggcaa ccagaaggcc ggcttcgagg cctcgaccga gatcaaccgc
     1261 aaggactggg gtctggagtg gaacgtcgcc ctcgagggtg gcggcgtgct cgtctccgag
     1321 aagatcaaga tcaacctgga catccagctg ctcaaggccg cctgacccag cagttcctgc
     1381 acttattgcc ctggatccac cgtttgaggc cgcataacca gccatcacgg tggattcagg
     1441 gcaataagtc gtaaacccgg acggaggaat caggaacgca ggagcgctgc tgcttccagg
     1501 gcgtagtagg tcaggatgat ctgagccccg gcacgccgga tgttgagcag tgactccatg
     1561 atggcgcgct cccgctcgat ccagccctga gcggacgccg cctcgatcat cgagtactcg
     1621 cccgagatct ggtacgccgc caccggcacc ggcgacatcg ctgcggcagc ggcgacgata
     1681 tccaggtgcg gcatcgccgg cttcaccagc acgatgtcgg caccctccgc gatgtcgagc
     1741 tcgagctcgc gcaacgcctc ggtcgcattg gccgggtcct gctggtacgt cgcccggtcg
     1801 ccctccagcg aggactggac ggcctcccgg aacggcccgt acaggccaga ggtgtacttc
     1861 gcggcgtagg ccaggatcac cacgtcggtg aacccctcgg catccagggc ggcccggaca
     1921 taggccacct ggccgtccat cattcccgag aggccgagca cgtgcgcgcc cgcacgggcc
     1981 tgcgccaggc ccatcgcggc ataccgctcg agcgtggcgt cgttgtccac gcgacccgca
     2041 gcatccagga ccccacagtg accgtggtcg gtgaactcgt ccagacacag gtcggccatc
     2101 accacgagac ggtcgccgac cgcggctgcc accgcacgca gggccacgtt gaggatgccg
     2161 tccgggtcgt ccgccccgga gcccaccgcg tccttggacc tggggacgcc gaacagcatg
     2221 atcccgccga ttccggcgtc cgcagcggcc tgcgcctgcg cgaccagcga ctcgagcgtg
     2281 tgctgcacca ccccaggcat ggcctcgatc ggtacgggcg ccgagatccc ttcccgcacg
     2341 aagaccggca ggacgagctc ggccgggtgc aggcgggtct cggcgaccag gcgccggatc
     2401 gccgacgact gccgcaggcg ccgcggtcgg ttcaccggcc ccggcgccca cgaggaggcg
     2461 tcagacacta cttcgcccgg cgccgtgcag acgccttctt ggcactcggc cgaacgacag
     2521 cctcgccggc ctccgccgcc gctgttgcca ggcccagccc gaagtcggcc aaggcatcga
     2581 ccaacgagtc cgatgacgcc tcgggcgcca ggacgtcgac gcgcaggccg tgctcctcgg
     2641 cggtcttggc cgtcgccggg ccgatgcacg cgatgatcgt cgacgggtgc ggcttgccgg
     2701 cgataccgac caggttgcgc accgtcgagg acgacgtgaa cacggccgcg tcgaactgtc
     2761 cgcccttgat cgcctcccgg atgggagcgg ccggtggggc tgcgcggacg gtccggtatg
     2821 ccgtgacgtc gtccacctcc cagcccatcg cctgcagccc cgccaccagg gtgtcggtcg
     2881 cgatgtcggc ccgagggagg aagacgcggt tgatcgggtc gagcacctcg tcgaacggcg
     2941 gccagtcggc gagcaggccg ttggcggagt tctcgccgga cggcacgagg tcgggcacga
     3001 tgccccactc ccgcagcgcg ccagccgtga cgccaccgac cgcagcgatc ttgaggccgg
     3061 cgaaggcccg ggcatccagt ccgaactcct cgaacttctc ccggaccgcc ttgacggcat
     3121 tcacggaagt gaagccgatc cattcatagc gcccggtgac cagtcccttg accgcgcgtt
     3181 ccatctgctg cggcgtgcgg ggcggctcga cggagatcgt cgggacgacc tcggccgtcg
     3241 cgccatagga ctcgagccgg gtgatcgtcg aaccggactg ctccttggtg cgcggcacca
     3301 ggatgttcca gccgaagagc ggcttggtct cgaaccacga gaggctctcg cgaagggcga
     3361 ccgtagagcc caccacggcc agggccggga actgcacggc cttcatgacc ttggcgacct
     3421 cgcccagggt ggagacccga gtggactggg cgatggtggt gcccttctcg gtcagcgcca
     3481 ccagactgtc ggccgagcga ccagcggcga gcagcttggc cagcgcgtcg gccaggtctt
     3541 cgggcggccc gagcaggacg acggtcacgg agtccgccac ggacgccgac cagtcgaccg
     3601 cccggtcgtt cgccgagatc acgtgaaccg caggcgagct gctcgacgtc aacgggatgc
     3661 ccgcgtatgc cggcacggcc gagaccgcgc tgacgccagg gacgatgtcg aagccgatac
     3721 ctgccttgtg gcaggcgagt gcctcttcgg ccagcccgtt gaaggtcgag gggtcgccat
     3781 ccatcagccg aaccaccaga ccacccttgg cggccttggc ggccttcacc acgagcttgg
     3841 cgcgcatggc gtgggtcagg ggttggccgt ggtcaccgtg accggcgtcg acgacttcga
     3901 cgtcgtcgcg gcagtagcgg tcgacgacgg actcccgcgc gacctggtcg atcacgacgg
     3961 cctgggccga agcgagaagc tggaccgcac ggacggtcat cagacccgca tcgcccggcc
     4021 cggcgccgac aaaggcgacg cggcccggct ggcgggtggt cttggtggtg gttgcgttgg
     4081 tggctgcggt ggtgttcgag cgcgaggggc tcacggtgca cgctccgtgc tgttgggtgc
     4141 tgggctgcgg tcgggggcgg cgatcggatc gtctccggtc gcctcgggtg ggtctggggg
     4201 ccaatggtcg tggtcgagcg tgtggtcgag cgagacgagt cggtcggcgc cgtcctcgag
     4261 cagaaggcca gccagacggc gcccgatgga ctcggcctcc tcgaccgggc cgaccaggga
     4321 gcggcgcagg tcgaaggacc cgtcgacggc accgacgaaa ccccgcagcg acagctcgat
     4381 gccgtcgtgg ccctcgacga tctccgccag cgcgccgacc ggggccgagc agccggcctc
     4441 gagcgcggcg agcagggcac gctcagccgt gacggcggcg cgggtgtcgg ggtcgtcgag
     4501 ctcacgcagg agctcgatcg tggccgcgtc gtcggtgcgg cattcgacgg cgagtgctcc
     4561 ctggcctggt gcaggcagca tctgcaaggg gtcgatgacc tcggcgacgt cggccagtcg
     4621 tcctagcctg gccaagccgg cccgggcgag cacgaccacg tcgaccgcgc catcgcgggc
     4681 cagggcgatg cgcgtgtcga cgttgccacg gatgtctttg aactccaggc cgaggccgag
     4741 agcagcgagc tgagcgaccc ggcgcgggga cccggtgccg accacagccc cggcgggcag
     4801 gccgccgagg cctgcgcccg acgtgctgac gagaacgtcc cgagggtcct cccgcggggg
     4861 gatcgcggcg atcaccagac ccggctcggg ccaggtgggc aggtccttga gcgaatggac
     4921 ggcgaggtcg accttgccgg caagcagcgc ctggcgcagg gcggcggcga acaccccgtt
     4981 gcccccaagg atgctcaggg gggcactgga ggtgtcgcct tcggtgacga tctcgaccag
     5041 ctcgaccttg tggccgagag cgcgcagctg gtcggcaacc cagctggact gggtggtggc
     5101 cagggcgctt cggcgcgtgc cgagtcgcag cgtcgcgctc acggcagacc acctcgttcc
     5161 gggggtggca ccgacgagac cacggcctcg cccggccgca ggtcgaacag ctgccgcagg
     5221 gcctgggcgt agtcgtcgcc ctgcccgccg acggccagct ccttcacccg cacggtcggg
     5281 gtgtgcagaa gcttctcgac gatgcggtga acggcgagct ggacctccgc ccgggcctgg
     5341 tcgtcgaggt cgggaagccg ctggtcgagg cgggtcagct cgcccgcgac gacatcggcc
     5401 gcgtgggacc gcagcgccgc gacggtgggt gccaccgatt
//
LOCUS       DASYFY010000455         4307 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_715795, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000455 DASYFY010000000
VERSION     DASYFY010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4307
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_715795"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..1014)
                     /locus_tag="VGN19_09200"
     CDS             complement(70..1014)
                     /locus_tag="VGN19_09200"
                     /inference="COORDINATES: protein motif:HMM:NF016533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0019748 - secondary metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HEV7196104.1"
                     /translation="MTRTEEAAELVPEPFLTAVSRYTALQGALDGPSGQQWADRLPRL
                     LADVLDDWELVPNGPSTSGLTALVVPVLRDGEAYALKLAWPHLEGRDEPLALRHWDGR
                     GAVRLVAADPSRGALLLERLDGTRDLTGVDLDTACEVVGALLAELNVPAPQGLRRLSS
                     FAREQAAKLTVSEGLLPRRMVERTGALVRELTSDPQCDAALLHTDLHYENVLASLPGS
                     GRPTWLAIDPHAMAGHPGFEIQPLLRNRTDELGTGSAFRYLTRRRLEICAEAAGIPED
                     EALAWSYVHSAFQARWAAQEGDHAAVSLHIALLKALDG"
     gene            complement(1011..2009)
                     /locus_tag="VGN19_09205"
     CDS             complement(1011..2009)
                     /locus_tag="VGN19_09205"
                     /inference="COORDINATES: protein motif:HMM:NF025883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4439 domain-containing protein"
                     /protein_id="HEV7196105.1"
                     /translation="MSRADRPIAPRPERRAVLAAGLGAACAVTLGACGIRFGDRAPRP
                     PAVPARTPIPGEAFLLALVHSSAQLSRQAAAVGGARTGVPAQLASLHAQQVSVLEAEL
                     LRLGVPQSLITSARSTGPTPSGSTTATAKPVSPGGAVSTSPADLAAAEAADATSTAFP
                     LLARVDAPARPLAAALTAQRWAAANLLGTPRPLTAPAWKAAALASSFLDSTRAAIYGL
                     QVVAAQSSPGAQATLARVTLAGLQARAQLQEGLAGASAGPSPLGYPLPFPVTTPAAAQ
                     LLAVHVLTELRATNARDLGAAADAAGPLESAVGWLADTEVLAARWGVRLSAFPGLK"
     gene            2124..2711
                     /gene="rimP"
                     /locus_tag="VGN19_09210"
     CDS             2124..2711
                     /gene="rimP"
                     /locus_tag="VGN19_09210"
                     /inference="COORDINATES: protein motif:HMM:NF000930.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEV7196106.1"
                     /translation="MNVKDQIRPAVEAPLGHLGLLVEDVAVTPTGKRRLVRIWIDRMV
                     AEDIADSTTPTEPLTLDEVADATRVVSDALDASDALGEQPYTLEVTSPGLDRPLTLPR
                     HYRRNVGRLITVTPTEGPALTGRIVRAGDQSLTLDIPAVGKTPAARHDLSYAAIARSV
                     VEVEFSRPSAPLVEDDLDDRNDEGDDELDDFPEEH"
     gene            2713..3756
                     /gene="nusA"
                     /locus_tag="VGN19_09215"
     CDS             2713..3756
                     /gene="nusA"
                     /locus_tag="VGN19_09215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HEV7196107.1"
                     /translation="MDIDLTALRALERERDISLDILIPAIEQALLVAYHRTDGAYRNA
                     RVELDRKTGHVVVLAREEIEAAEPEEGAERPPREFGPEFDDTPTGFGRIAAATARQVI
                     VQRLRDLEDEAIMGDFKGREGDVVAGVIQQSPDPRHVTVDFGTVEGILPLAEQVPGER
                     YVHGERLRCFVVSVRRGPKGPQIGLSRTHPNLVRKLFALEVPEIADGSVEIAALAREA
                     GHRTKIAVHSKVAGLNAKGACIGPMGARVRAVMSELHGEKIDIVDYSDDPKKFVAAAL
                     SPSRVESVEIVDPQLRSARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTPAG
                     SSPEASSATSKHA"
     gene            3871..4149
                     /locus_tag="VGN19_09220"
     CDS             3871..4149
                     /locus_tag="VGN19_09220"
                     /inference="COORDINATES: protein motif:HMM:NF016204.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEV7196108.1"
                     /translation="MGCRGTDSWSALLRVVAEMDETGITRLTPDPRHRLPGRGAWLHP
                     TGDCLDQAFRRRAFGRALRTSAALDPAAVTAYVEALSTPVASDHAQNR"
BASE COUNT          686 a         1517 c         1514 g          590 t
ORIGIN      
        1 agggacaacc cgagtctttt cagcgaacga ccagcgcgcc tccagcaaaa gggtgacggt
       61 tcggttcgct cagccgtcca aggccttgag tagggcgatg tgcaaggaca ccgcggcgtg
      121 gtcaccctcc tgggccgccc aacgcgcctg gaacgccgaa tgcacatagc tccaggcgag
      181 cgcctcgtcc tcgggtatgc cggcggcctc ggcgcagatc tccagtcgtc gacgggtgag
      241 ataccgaaac gccgaacccg tcccgagctc gtccgtgcgg ttgcgcagca gtggctggat
      301 ctcgaagccg gggtgacccg ccatggcgtg tggatcgatg gccaaccatg tcggccggcc
      361 cgagccgggc aggctggcca ggacgttctc gtagtgcagg tcggtatgca gcaaggcagc
      421 gtcgcactgg gggtcggagg tgagctcgcg caccagggct ccggtccgct cgaccatccg
      481 gcgcggcagc agtccctccg acacggtgag cttcgcggcc tgttcacggg cgaacgacga
      541 aagtcgccga agaccttggg gcgcagggac attcagctcg gccaacaatg ctccgacgac
      601 ctcgcacgcg gtgtcgaggt cgacgcccgt caggtcccga gtgccgtcca gcctctcgag
      661 cagtagcgcg ccgcgcgagg ggtcggccgc gaccagccga accgccccgc ggccgtccca
      721 gtggcgcagc gccaggggtt cgtcgcgtcc ctcgagatgc ggccaggcga gcttgagcgc
      781 ataggcctca ccgtcgcgca gcaccggaac caccagcgcg gtgaggccgc tggtggaagg
      841 gccattcggc accagctccc agtcgtcgag gacgtccgcc agcaggcgtg gcagccggtc
      901 cgcccactgc tgcccggagg ggccgtccag ggcgccctgc agggcggtgt acctgctgac
      961 tgccgtgagg aacggctcgg gaacgagctc agccgcctct tcggtccggg tcacttcagg
     1021 cctgggaagg cagacagcct gacgccccag cgcgctgcca gaacctcggt gtcagcgagc
     1081 catcccacgg cggattccag gggaccggcg gcatccgcgg ctgccccgag gtctcgcgcg
     1141 ttcgtcgctc tgagctcggt gaggacgtgt accgcgagca gctgcgccgc agcgggtgtg
     1201 gtgaccggga acggcaacgg ataccccagc ggtgacggtc cggcggaggc gccggccaga
     1261 ccttcctgga gctgggcgcg cgcctgcagg ccggccaggg tgacccgggc gagcgtcgcc
     1321 tgcgcgccag gggatgactg cgcggcgacg acctgcaggc catagatggc ggctcgcgtg
     1381 ctgtcgagga aggacgacgc gagcgcggct gccttccagg cgggggcagt cagtggcctg
     1441 ggtgtgccga gcaggttcgc cgccgcccac cgctgggccg tcagtgctgc ggcaagtggg
     1501 cgcgcagggg cgtcgacccg ggccagcagc gggaaggctg tgctcgtcgc atcggctgcc
     1561 tcggcggccg cgaggtcggc cggactggtg gacactgcgc cgccaggcga gaccggcttg
     1621 gcggtggccg tcgtggagcc ggagggcgtg gggcctgtcg accgtgccga ggtgatgagg
     1681 ctctgcggca ccccgagtcg cagcagctcc gcctcgagca cgctgacctg ttgcgcgtgc
     1741 aggctggcca gctgggccgg caccccggtg cgagcacctc ccacagcggc agcctggcga
     1801 gagagctgcg cgctgctgtg cacgagtgcc agcaggaacg cctcaccggg gattggcgtt
     1861 cgggcgggca cggctggggg gcgtggtgcc ctgtcgccga accggattcc acacgccccc
     1921 aacgtcaccg cgcacgccgc gcccaggcct gccgcgagca cggcacgtcg ctcggggcgc
     1981 ggggcgatgg ggcggtccgc gcgcgacatg ggccgatcat gacatgctgc tcggcctgcc
     2041 ccggccaccg cgtatgccgg tcggcccgcg tggcggatag agtgggcggc gcatcacccc
     2101 aacttcacag agaggacgag tcagtgaacg tcaaggacca gattcgtccc gccgtggagg
     2161 cccctttggg ccacctcggt ctcctcgtcg aagacgtcgc agtgacccca actggcaagc
     2221 gccgtctcgt ccgcatctgg atcgaccgca tggtcgccga ggacatcgcc gacagcacga
     2281 cccccaccga gccactgacc ctggacgagg tcgcggacgc gacccgggtc gtcagcgacg
     2341 cgctcgacgc gtccgacgcc ttgggcgagc agccgtacac cctcgaggtc acctcgcccg
     2401 ggctggaccg tccgctgacc ttgcctcgtc actaccgccg caacgtcggt cgcctcatca
     2461 ccgtgacgcc caccgagggg cccgccctga ccggacgcat cgtgcgtgcc ggcgaccaga
     2521 gcctgaccct ggacatcccg gccgtcggca agaccccagc cgcccggcac gacctgtcgt
     2581 atgccgcgat cgcacggtcg gtggtcgagg tggagttctc gaggccttct gccccgctcg
     2641 tggaggacga cctcgacgac cgcaacgacg aaggcgacga cgagctcgac gacttccctg
     2701 aggagcactg acatggacat cgacctgact gcattgcgag cgctggagcg cgaacgcgat
     2761 atctccctcg acatcctcat tccagcgatc gagcaggccc tgctggtggc gtaccaccgc
     2821 acggacggtg cctaccgcaa cgcccgcgtc gagctcgacc gcaagaccgg ccacgtcgtc
     2881 gtcctggccc gcgaggagat cgaggcggcc gagccggaag aaggtgccga gcgacctccc
     2941 cgcgagttcg gtcccgagtt cgacgacacc ccgacgggtt tcggccggat cgcggccgcg
     3001 acggcccgtc aggtcatcgt ccagcgcctg cgcgacctcg aggacgaggc catcatgggc
     3061 gacttcaagg gccgtgaggg cgatgtggtg gctggagtga tccagcagag ccccgacccg
     3121 aggcacgtca cggtcgactt cggcaccgtc gagggcatcc tgccgctggc cgagcaggtg
     3181 ccgggggagc gctacgtcca cggcgagcgc ctgcgctgct tcgtcgtctc cgtgcgccgt
     3241 gggcccaagg gtccccagat cggactgtcg cggacccacc ccaacctggt tcgcaagctg
     3301 ttcgcgctcg aggtgcccga gatcgccgac gggtcggtgg agatcgcagc cctggctcgt
     3361 gaggcggggc accgcaccaa gatcgcggtg cactccaagg tggcgggact caacgccaag
     3421 ggcgcctgca tcggtccgat gggggcgcgg gtccgcgcgg tgatgagcga gctgcacggc
     3481 gagaagatcg atatcgtcga ctactccgac gaccccaaga agttcgtcgc cgccgcgctc
     3541 tcgccctcgc gggtcgagtc cgtagagatc gtggacccgc agctgcggtc cgcccgggtc
     3601 atcgtgccgg actaccagct gtccctggcg atcggcaagg agggccagaa cgcccgcctc
     3661 gcggccaagc tcaccggctg gcgcatcgac atccgccccg acaccccggc gggcagcagt
     3721 ccggaggcgt cttcggccac ctccaagcac gcgtgacgcc gccccacggc gataggggat
     3781 agactggtgg ggaccgaccg gactggactc cggcccgcga catctggcac taccccccgc
     3841 accgcccccg ggcaacccac ccggacgtgt gtgggatgcc gcgggacgga tagctggtcg
     3901 gcactcctgc gagtggtcgc ggagatggat gagaccggca taacccggct gactcccgat
     3961 ccgcggcacc gactgccggg gcgcggcgca tggctgcacc ccacgggtga ctgtcttgac
     4021 caggcctttc gtcgtcgggc gttcgggcgt gcgctgcgaa ccagcgccgc ccttgacccg
     4081 gcggcggtca cggcatacgt cgaggcgttg tccacaccgg tggccagcga ccacgcgcag
     4141 aaccgttgaa cggcaccacc tgaacagcag aacctttgaa caaccgtccg tatccatggg
     4201 aaccgaaagc gggtttgacg ctgatgagca cccgatgaga actcagcaat gagctccccc
     4261 cagcagtaac gacggtccgc gcctgtcacc tgacacacgg accagga
//
LOCUS       DASYFY010000456         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1556620, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000456 DASYFY010000000
VERSION     DASYFY010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1556620"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VGN19_09225"
     CDS             complement(<1..281)
                     /locus_tag="VGN19_09225"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEV7196109.1"
                     /translation="MSGPDQRPALPERAGDTTAEHPWPVRLLSLKIAEYVEKMSVLWV
                     EGQVVQLTRRPGQRTAYLTLRDPDVDLSLSVAIQTNALDAMPTELAQGA"
     gene            420..1433
                     /locus_tag="VGN19_09230"
     CDS             420..1433
                     /locus_tag="VGN19_09230"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEV7196110.1"
                     /translation="MTEPTKRVLLAAPRGYCAGVDRAVVTVEKALELYGPPVYVRKEI
                     VHNKHVVTTLEKRGAVFVEETDEVPEGATVIFSAHGVAPVVHEEAKALSLKTIDATCP
                     LVTKVHREAVRFAGEDFDILLIGHEGHEEVVGTSGEAPDNITLVDGPDDVDQVTVRDP
                     EKVVWLSQTTLSVDETMETVRRLRERFPALQDPPSDDICYATQNRQLAVKQMAPDTDL
                     MIVVGSRNSSNSVRLVEVALEHGSKAGHLVDYADEIQESWLEGVGTVGVTSGASVPEV
                     LVRDVLTYLAERGFKDVAPVVAAEESLLFSLPNEIRRDLKARGMSDKMRHDGSFEEAG
                     SLH"
BASE COUNT          234 a          495 c          546 g          239 t
ORIGIN      
        1 ctggcaccct gggcgagctc ggtcggcatg gcgtcgaggg cgttcgtctg gatcgccacg
       61 gagagtgaca ggtcgacgtc cgggtcgcgc agggtgaggt atgccgtccg ctggccaggg
      121 cgacgggtga gctggacgac ctggccctcg acccagagca cggacatctt ctctacgtac
      181 tcggcgatct tcaggctgag cagccggacc ggccaggggt gctcggccgt ggtgtcgccc
      241 gcgcgttcgg gcagcgccgg gcgctggtcg ggaccgctca cgcgctcact ctaggaggtc
      301 gcgccgtgag ggcggcggca gcgcgccccg cctccgtgct ccatcggggc ccaccatgct
      361 cgatcggggc ccaccatgct cgattggggc cctgcgctcg cacaacttac gatgggacca
      421 tgactgaacc gaccaaacgc gtgctcttgg ccgccccgcg cgggtactgc gccggcgtcg
      481 accgggccgt cgtgacggtc gagaaggctc tggagctcta cgggccaccc gtgtacgtcc
      541 gcaaagagat cgtgcacaac aagcacgtgg tgaccaccct cgagaagcgc ggggccgtgt
      601 tcgtcgagga gaccgacgag gtgccggagg gcgcgacggt gatcttctcg gcgcacggtg
      661 ttgctccagt ggtgcacgag gaagccaagg cgctgagcct gaagaccatc gacgccacgt
      721 gcccgctggt gaccaaggtg caccgtgagg ccgtccggtt cgctggcgag gacttcgaca
      781 tcctgctgat cgggcacgag gggcacgagg aggtcgtcgg cacctccggc gaggcccccg
      841 acaacatcac gctggtcgat ggtccggacg atgtcgacca ggtcacggtc cgcgacccgg
      901 agaaggtggt ctggctgtcc cagacgaccc tgtcggtgga cgagaccatg gagaccgtgc
      961 gacgactgag ggagcggttc ccggcccttc aggacccgcc cagcgacgac atctgttacg
     1021 ccacccagaa ccgccagctc gcggtcaagc agatggcgcc ggacaccgac ctgatgatcg
     1081 tcgtgggctc gcgcaactcc tcgaactccg ttcgcctggt cgaggtcgcg ctcgagcacg
     1141 gatcgaaagc cggtcacctg gtcgactacg ccgacgagat ccaggagtcc tggcttgagg
     1201 gcgtcgggac cgtcggggtg acctccggcg cgtctgtccc cgaggtgctc gtccgcgacg
     1261 tgctgacgta cctggccgag cggggcttca aggatgtggc ccccgtggtg gccgccgagg
     1321 agagcctgtt gttctcgcta cccaacgaga ttcgtcgtga tctcaaggcc cgaggcatgt
     1381 cggacaagat gcgtcacgac ggctcgttcg aagaggccgg ctcgctgcac tgaccgaccc
     1441 gcccccggtg gtggtccggt ggtggtccgg tggtggctag ccggtggcgg ctgcgggggg
     1501 ctggcctcga ccgg
//
LOCUS       DASYFY010000457         2719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1347575, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000457 DASYFY010000000
VERSION     DASYFY010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347575"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..310
                     /locus_tag="VGN19_09235"
     CDS             <1..310
                     /locus_tag="VGN19_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006946151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEV7196111.1"
                     /translation="HPSAIILGLALGVSAAIIHGAMVLTRQPWPIALVTSAELGVPVA
                     AATLGTTLHVLGPGENTAIILGALVTVGITAALSGAIAGVASRGAGTQDAAHHQPSTS
                     "
     gene            516..1985
                     /locus_tag="VGN19_09240"
     CDS             516..1985
                     /locus_tag="VGN19_09240"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012868333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEV7196112.1"
                     /translation="MPFSELGVPAPLVTALRDRGITTAFPIQAATLPDSLAGRDVLGR
                     GRTGSGKTVAFALPTLATLAKSGRQRTPGAPRALVLVPTRELATQVAETITPLATAMN
                     LRTMVIFGGVGQTPQVNTLRRGVDVVIATPGRLEDLIGQRHVRLDQIEVTVLDEADHM
                     ADLGFLPAVKRLLDATPRDGQRLLFSATLDNAIDQLVRRYLSSPVTHSVDSAASPVPA
                     MAHHVFHVSRDDKPTVVRELVSGRGRTLAFTRTKHGAKKLAKQLTQSGIPAVELHGNL
                     SQSARQRNLAAFGEGTTRVLVATDIAARGIHVDDVTLVIHVDPPSEHKAYLHRSGRTA
                     RAGAEGVVVTVSTPDERGDTRTLMRQAGIRPTSVDVTPGHPVIGTLTGPVADLVTPVA
                     TVEQPARGTGRPRSGGTGVRGGASPARGGSAGRGRGRSGAPQTARGEGPGPRSEGSQR
                     PTGSQRRSGGPQGGGTGSAGRSGSGGSSIAQFSAGRRGR"
     gene            complement(2078..>2719)
                     /locus_tag="VGN19_09245"
     CDS             complement(2078..>2719)
                     /locus_tag="VGN19_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012879426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEV7196113.1"
                     /translation="DRGIWEIRGEAKHFTSSKVMCWVAADRGAKLARVREEFELAQRW
                     QDSADEMHADICTNGIDDRGVFIQHYGTTALDASNLLLPLVGFLPADDPRLHATVVAI
                     ADELTQDGLVLRYRVGETDDGLSGEEGTFTICSFWLVSCLAIVGEKRRARHLCERLLN
                     LATPLGLYAEEIDATSGRHLGNFPQAFTHLGLINAVLKVISAEEVEDEDPLSP"
BASE COUNT          404 a         1004 c          877 g          434 t
ORIGIN      
        1 gcacccgtca gccatcatcc tcgggctggc cttgggggtg tcggccgcca tcatccatgg
       61 cgcgatggtg ctgactcgac agccttggcc cattgccctc gtcacgtcgg ccgagctggg
      121 tgtgcccgtc gccgcggcca ccctcggcac caccttgcac gtgctcggtc ctggcgagaa
      181 cacggcgatc atcctcggcg ctctcgtcac ggtagggata accgccgccc tgtcgggtgc
      241 gatcgccgga gtcgcctctc gaggcgccgg gacccaggac gccgcacacc accagccctc
      301 aacatcctga gagccggccg accgtccgtt tgggggaatg aacggcacct gcattagggt
      361 tggaccgttc ggcgcgcatt cgagtgcgcc gcaggtcgtc tgctccgcgc cccaactctg
      421 gttggcgccg tcagctcacg tgacgtgagt ggtccagcat cgtcggccac ttcctactga
      481 cgagagcatc ttctgtgtct gaacattctt ctgccgtgcc cttctccgag ctcggagtcc
      541 cggcgcccct ggtgaccgca ctgcgcgacc gcggcatcac cactgccttc cccatccaag
      601 ctgccaccct tccggactcg cttgcgggcc gcgacgtgct gggccgcggt cgcaccggta
      661 gtggcaagac cgtggctttt gcgctgccca cccttgccac cctggccaag tcggggcggc
      721 agcggacgcc gggtgccccc cgtgccctgg tgctggtacc cacccgcgag ctcgccaccc
      781 aggttgccga gaccatcacg cccctggcga cggccatgaa ccttcggacc atggtgatct
      841 tcggcggtgt gggacaaacc ccgcaggtca acacgttgcg tcgcggcgtt gacgtcgtca
      901 tcgcgacccc gggacgcctg gaggacctca ttggtcagcg gcacgtccgg ctcgaccaga
      961 tcgaggtgac cgttctcgac gaggccgacc acatggccga cctcggcttc ctgccggcgg
     1021 tcaagcgcct gctcgatgcg accccccgcg atgggcagcg actcctcttc tccgccaccc
     1081 tcgacaacgc catcgaccag ctcgtgcgcc gttacctgag ctcgccggtg acccactcgg
     1141 tggacagcgc ggcctcgccg gtcccggcca tggctcacca cgtgttccac gtttcccgcg
     1201 acgacaagcc gacggtcgtt cgcgagctcg tgtccggccg cggtcgcacg ctggcgttca
     1261 cccgcaccaa gcacggcgcg aagaagctcg cgaagcagct gacgcagtcc ggcatacctg
     1321 cggtcgaact gcacggcaac ctttctcaga gcgcccggca gcgcaacctc gccgccttcg
     1381 gtgagggaac cacccgcgtc ctggtggcca cagacatcgc ggctcgcggt atccatgtcg
     1441 atgacgtcac gctggtgatc catgtcgacc cgccgtccga gcacaaggcg tacctccacc
     1501 gctcagggcg cactgcccgc gccggcgccg agggtgtcgt cgtgacggtc agcacccccg
     1561 acgagcgcgg cgacactcgc acgctcatgc gtcaggccgg aattcgtccc acgtcggtgg
     1621 acgtgacccc gggccacccg gtcatcggca ccttgaccgg tcccgttgcc gacctggtca
     1681 ctcctgttgc caccgtggag cagcccgccc gtggcaccgg ccgcccgcgc agcggtggca
     1741 ctggcgtccg aggtggtgcc tcgccagcgc gtggaggttc tgctggtcgc ggtcgcggcc
     1801 ggagcggggc gccccagacc gcacgcggcg agggccccgg tccgcgctcg gaaggctcgc
     1861 agcggccgac ggggtcccag cggcgatcgg gcggcccgca gggcggcggc accgggtccg
     1921 ctggacgcag cggcagcggc ggctccagca ttgcgcagtt ctccgccggt cgccgcgggc
     1981 gctgagccac cggccagacc agacggctag tcagccctct cgacggcgtc ggcccctttg
     2041 ggccggcgcg gtcgagaagg tcaagtccga cgacggccta gggcgatagc gggtcctcgt
     2101 cctcgacctc ctcggccgag atcaccttga gtaccgcgtt gatcaacccg aggtgcgtga
     2161 aggcctgagg gaagttcccg aggtgacgtc cactcgtcgc atcgatctcc tccgcataca
     2221 gccccaaggg ggtggccagg ttgagcagcc gctcacacag gtgccgtgca cggcgcttct
     2281 cgcccacgat ggccaggcat gagaccagcc agaacgagca gatggtgaag gtcccctcct
     2341 caccgctgag cccgtcgtcg gtctccccca cgcgataacg cagcaccagc ccatcctggg
     2401 tgagctcgtc ggcgatggcc acgacggtgg catgcaggcg tgggtcgtca gccggcagga
     2461 agcccacgag cggcagcagc aggttggagg catccaaagc tgtggtgccg tagtgctgga
     2521 tgaacacacc acggtcgtcg atcccattgg tgcagatgtc ggcgtgcatc tcgtcggcgg
     2581 agtcctgcca gcgttgggcc agctcgaact cctcccgcac gcgagccagc ttcgcgccac
     2641 gatctgccgc gacccagcac atcaccttgg acgacgtgaa gtgcttggcc tcgccgcgga
     2701 tctcccagat gccgcgatc
//
LOCUS       DASYFY010000458         4534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1713714, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000458 DASYFY010000000
VERSION     DASYFY010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4534
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713714"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VGN19_09250"
     CDS             complement(<1..354)
                     /locus_tag="VGN19_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEV7196114.1"
                     /translation="MLTGLPAADSFTLHDLTPALLVGSLVLLVSVAAVRLSVRSGLPS
                     LLIYLGIGLALGDSGFGIQFNSAQLTQVLGYAALILILAEGGLSTRWEGIRRSVAPAA
                     VLSTVGVLVSVGVVAL"
     gene            411..2999
                     /locus_tag="VGN19_09255"
     CDS             411..2999
                     /locus_tag="VGN19_09255"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEV7196115.1"
                     /translation="MKLVRRIGVAVAAVLVVVMTVAAVLAVTWVRRPFATTDGEISVP
                     GLTGKVQVLRGDHGIPQIYADNAEDLFRAEGFVHAQDRFFEMDLRRHITSGRLSELVG
                     KSGLTTDRVIRTLGWRRTAEAELPTLKPESRRYLQAYADGVNAYIHQKGTPSRMSLEY
                     TFLSTKVPDYRVEDWTPADSLAWLKAMAWDLRGDYSSELMRARLAGSMPISQINELFP
                     PYPYSQNKPILSGQDWSPASTAAATKPAASAIPVEPTLAARTSPALQKAYKQVASVLA
                     AVPQTVGRGDGIGSNSWVVAGSRSSTGKPLLANDPHLGVSIPSIWYQVGLHCRTLSSD
                     CPFDVTGYSFSGLPGVVIGHNQSIAWGFTNLGPDVSDFFLEQVRGNTYLRDGKQVPLT
                     TRTETIKIGGGGEESITVRSTVHGPILSDAIDAVEAAGESPPVNGHTVSGKYEVSLDW
                     TGLKVGQTADAIFGLDEATNFTEFRDAARSFAVPAQNLLYADTAGNIGYQAPGQIPIR
                     SRYMDAAPGYWIRPGWLSSMDWHGYVPFAQMPFTLNPPEGFIVAANQAATQSATPFLT
                     TEWDYGFRSQRIRTLLEHNTKVTPADMSAIQGDTRSQFAPTLVKALLGVDLHGDGFTK
                     QAQDLLRGWDYTNPVGNSRSGAAAAYYNAVWSNLLDLTFDDELPKDLRADGGSAWMQA
                     VANLLQKPRDAWWDDKRTAGVVEGEGEILRKALVEARLQLTKELGKEPADWQWGQLHQ
                     LTLQHQVLGGSDVPGFVAAIFNRGPIDLPGGSAIVDANGWDASKGFAVNWAPSMRMVV
                     DLSNFDHSHWVNQTGNSGHVFDVNYDDQTGAWANNELFAWPFSRSAVVGAGGDDLTLV
                     PDASNS"
     gene            complement(2996..3571)
                     /locus_tag="VGN19_09260"
     CDS             complement(2996..3571)
                     /locus_tag="VGN19_09260"
                     /inference="COORDINATES: protein motif:HMM:NF013934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEV7196116.1"
                     /translation="MSERANDADPIAVAKENLRTELKTRRRTATVGRDRAEDAQALAL
                     DALRVAHEAGLGGGSWVAAFESTASEPPMEALVDALRGRGIRVMVPITQDDWDLDWRE
                     VGTDAPLGAEAVAQAKVVFVPAQAVDLRGHRLGRGKGCYDRALPRTTALLVAVVHPWE
                     VLDRPVPHATHDRTVHAVIAAGLGVRHLPVT"
     gene            3613..4527
                     /gene="galU"
                     /locus_tag="VGN19_09265"
     CDS             3613..4527
                     /gene="galU"
                     /locus_tag="VGN19_09265"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009881915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEV7196117.1"
                     /translation="MSTDQPTRTVTKAVIPAAGLGTRFLPATKATPKEMLPVVDKPAI
                     QYVVEESVRAGLEDVLIITGRNKAALEDHFDHHWELEAALEAKGDQHRLDRVREAAAL
                     KVHFVRQGQPRGLGHAIHVAKEHVGNNPFAVLLGDDLIDARDHLLEEMLRVREEKGGS
                     VVALLEVPPQSVHLYGCAAVESRDGDVVRITGLVEKPDPAEAPSNLAVIGRYVLDPSV
                     FDVLEKTAPGRGGEIQITDALATLATSTEEGGGVHGVIFRGRRYDTGDRLDYLKAVVR
                     LGVDHAELGKDFGAWLDDFSAERADSQR"
BASE COUNT          764 a         1593 c         1497 g          680 t
ORIGIN      
        1 cagggcaacg acgcccacgg agaccagcac gccgacggtc gacagcaccg cggccggagc
       61 gacagatcga cggatccctt cccaccgcgt gctcagaccg ccctcggcca ggatgaggat
      121 caacgcggca taccccagca cctgggtgag ctgcgcggag ttgaactgga tcccgaagcc
      181 ggagtcgccc aaggcgagcc cgatccccag gtagatcagc agcgagggca gacccgacct
      241 gaccgacagc cggaccgcgg ccaccgagac cagcaggacc agcgacccca ccaacaacgc
      301 cggcgtcagg tcatggaggg tgaacgagtc ggctgcaggc aaacctgtga gcacggcccg
      361 tcccgtcctt tccctcggag tcgtgcggat agtctcgcag ggtgtctcgc gtgaaactcg
      421 ttcgccgcat tggtgtcgct gtcgcggccg tcctcgtcgt cgtgatgacg gtggcggcgg
      481 tgctggccgt gacgtgggtc cgtcgaccct tcgcgacgac ggacggcgag atcagcgtgc
      541 ccggcctcac cgggaaggtg caggtcctgc gcggcgacca cggcatacct cagatctatg
      601 ccgacaacgc cgaagacctg ttccgcgccg aaggcttcgt gcacgcccag gaccggttct
      661 tcgagatgga cctgcgtcgg cacatcacgt ccggtcggct ctccgaactc gtgggcaagt
      721 ccgggctgac gactgaccgg gtgatccgca cgctgggctg gaggcgcacc gccgaggccg
      781 agctcccgac cctgaagccc gagtcccgcc gctacctgca ggcgtatgcc gacggtgtca
      841 acgcctacat ccaccagaag ggaaccccct cgcggatgtc cctggagtac accttcctct
      901 cgacgaaggt cccggactac cgggtcgagg actggacgcc cgccgactca ctggcctggc
      961 tcaaggcgat ggcctgggac ctgcgcgggg actacagctc ggagctgatg cgggcgcggc
     1021 tggcgggatc gatgccgatc agccagatca acgaactgtt cccgccctac ccgtacagcc
     1081 agaacaagcc catcctgtcg ggtcaggact ggagcccggc gagcactgcg gccgcaacca
     1141 agcccgcagc cagtgcgatc ccggtcgaac cgactctggc cgcccgcacc agcccggctc
     1201 tgcagaaggc ctacaaacag gtcgccagcg tgctggccgc agtgcctcag accgtgggac
     1261 gcggcgacgg aatcggctcg aactcctggg tggtcgcggg cagccgctcc agcaccggga
     1321 aaccgttgct ggccaacgac cctcacctcg gcgtgagcat tcccagcatc tggtaccagg
     1381 tcggtctgca ctgccgcacc ctgtccagcg actgtccctt cgacgtcacg ggctactcgt
     1441 tctcggggct gccaggggtg gtcatcggcc acaaccagtc gatcgcctgg ggcttcacca
     1501 accttggacc ggacgtcagc gacttcttcc tcgagcaggt ccggggcaac acctatctgc
     1561 gcgacggcaa gcaggtcccc ctgactacgc gcaccgagac gatcaagatc ggcggtggtg
     1621 gggaagagtc catcaccgtt cgcagcaccg tccatgggcc gatcctcagc gacgccatcg
     1681 atgcggtcga ggcggccggg gagagcccgc cggtcaacgg gcacaccgtc tccggcaagt
     1741 acgaggtctc gctggactgg acgggtctga aggttggcca gacggcggac gccatcttcg
     1801 ggctggacga ggccaccaac ttcaccgagt tccgtgacgc ggcgcggtcc ttcgcggtgc
     1861 ccgctcagaa cctcctgtat gccgacaccg ccggcaacat cggctaccag gctcccggcc
     1921 agatcccgat ccgcagccgg tacatggatg ccgcgccggg gtactggatc cgtccggggt
     1981 ggctgtcctc aatggactgg catggctacg tgccgttcgc ccagatgccc ttcaccctca
     2041 accctcctga ggggttcatc gtcgcggcga accaggctgc cacgcagagc gcgacgccat
     2101 tccttaccac cgagtgggac tacgggttcc gcagccagcg catccgcacg ctgctcgagc
     2161 acaacaccaa ggtgacgccg gccgatatgt ccgccatcca gggcgacacc cgcagccagt
     2221 tcgcgccgac gctggtcaag gcgctgctcg gcgtcgacct gcacggcgac ggattcacca
     2281 agcaggcgca ggacttgttg cgcggctggg actacacgaa tccggtcggc aactcgcggt
     2341 ccggtgccgc ggctgcctac tacaacgccg tctggtcgaa cctgctcgac ctgacgttcg
     2401 acgacgagct gcccaaggac cttcgggccg acggcggaag cgcctggatg caagccgtcg
     2461 ccaatctcct gcagaagcca cgggacgcct ggtgggacga caagcgcacc gctggggtcg
     2521 tcgagggcga gggcgagatc ctgcgcaagg ccctcgtgga ggccaggctc cagctcacca
     2581 aggagctcgg gaaggagccg gccgactggc aatggggcca gctgcaccag ctcacccttc
     2641 agcaccaggt cctcggcggc tcggacgttc ccggcttcgt cgcggcgatc ttcaaccgcg
     2701 ggccaatcga cctgcccggc ggttcggcga tcgtcgacgc caacggctgg gacgccagca
     2761 agggctttgc ggtcaactgg gccccgtcga tgcgcatggt cgtggacctc tccaacttcg
     2821 accattcgca ctgggtcaac cagacgggca acagcggtca cgtgttcgac gtcaactacg
     2881 acgaccagac cggtgcctgg gccaacaacg agctgttcgc gtggcccttc tcgcggtctg
     2941 ccgtcgtcgg cgcgggcggc gacgacctca ccttggtccc ggacgcgtcg aacagctagg
     3001 tcactgggag atggcggact cccagccccg cagcgatcac cgcgtggacc gttcgatcgt
     3061 gggtcgcgtg ggggaccggc ctgtccagca cctcccaggg gtggacgacg gccaccagca
     3121 gtgccgtcgt ccgcggcagc gcgcggtcgt agcagccctt gcctcggccc agccgatgcc
     3181 cacgcagatc gacggcctgg gccggcacga agacgacctt cgcctgggcg acggcctccg
     3241 ccccgagggg ggcgtcggtt cccacctcac gccagtcgag atcccagtcg tcctgggtga
     3301 tcgggaccat gactcgtatg ccgcggcccc gcaaggcgtc gaccagcgcc tccatcggcg
     3361 gctcggaggc ggtcgactcg aaggccgcca cccaggaacc gccccccagt ccggcctcgt
     3421 gcgcgacccg tagcgcgtcc agcgccagtg cctgagcgtc ctcggcgcgg tcgcgaccga
     3481 cggttgcggt ccggcgtctg gtcttgagct cggtccggag gttctccttc gccaccgcga
     3541 tcgggtcggc atcgttcgca cgttcgctca cgaggcctat cctgcctgac cacggccatt
     3601 agggttgggc tcatgagcac cgaccagccc acccgtacgg tcaccaaggc cgtgatcccc
     3661 gctgccggtc tggggacgcg cttcctgcct gccaccaagg ccactcccaa ggagatgctg
     3721 ccggtcgtcg acaagcccgc catccagtac gtggtcgagg agtccgtccg ggccggcctg
     3781 gaggacgtcc tgatcatcac cggtcgcaac aaggccgccc tggaggacca cttcgaccat
     3841 cactgggagc tcgaggcggc actggaggcc aagggtgacc agcatcggct ggatcgggtg
     3901 cgtgaggccg cggccctcaa ggtgcacttc gtgcggcagg gccagcccag gggcctgggt
     3961 cacgcgatcc acgttgccaa ggagcacgtc ggtaacaacc cgttcgccgt cctgctgggc
     4021 gatgacctca tcgatgcgcg cgaccacttg ctcgaggaga tgctgcgggt gcgtgaggag
     4081 aagggcggca gtgtggttgc cctcctcgag gtgccgccgc agtcagtgca cctgtacgga
     4141 tgcgccgcgg tcgagagccg cgacggcgac gtcgtgcgga tcaccggcct cgtcgagaag
     4201 cctgaccccg ccgaggcccc cagcaacctt gcggtgatag gtcgatatgt gttggacccc
     4261 tcggtgttcg acgtactgga gaagaccgcg cccggccgag gcggcgagat ccagatcacc
     4321 gatgctctgg ccactctggc cacctcgacc gaggagggcg gcggcgtgca cggcgtcatc
     4381 ttccggggtc ggcgctatga cacaggtgac cggctcgact acctcaaggc cgtggtgcgg
     4441 ctgggcgtgg accacgccga gctcggcaag gacttcggcg cctggctgga cgacttcagc
     4501 gccgagagag ccgacagcca gcggtgatct ccgt
//
LOCUS       DASYFY010000459         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1294487, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000459 DASYFY010000000
VERSION     DASYFY010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294487"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..123)
                     /locus_tag="VGN19_09270"
     CDS             complement(<1..123)
                     /locus_tag="VGN19_09270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEV7196118.1"
                     /translation="MAAPQNYLAVIKVVGIGGGGVNAINRMIEVGLKGVEFIAIN"
     gene            complement(375..1118)
                     /locus_tag="VGN19_09275"
     CDS             complement(375..1118)
                     /locus_tag="VGN19_09275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEV7196119.1"
                     /translation="MTRQHPRTGLASSRARFHVRAQEVRRRPWRLTGYVAGVVAVVTL
                     LVWVVGFSPLLAVRSVEVVGVPQSEVAAIRTLAQVPLGQPMARVDSAAVTSRVGQLAT
                     LADVSIERSWPSTLVIHASPRVPFLVVKNPQGQLQVVDASGLAYARVNAVPRGVPVVF
                     AASQAALSRDALMTAVTVVRVLPASLQRRVTRVVVSSADLVTLTIGATQVVWGGVDAP
                     ERKLTIMTALLKAAPHVVDVSAPDTPVTR"
     gene            complement(1115..>1743)
                     /locus_tag="VGN19_09280"
     CDS             complement(1115..>1743)
                     /locus_tag="VGN19_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEV7196120.1"
                     /translation="TSITGPDGVARILRINIPGRHNLLNAAAAYTTAVEGLGQEPERV
                     LEGLFGFTGTRRRFEPKGSEGGVSVVDDYAHNPGKVAAVVGTGAELVRAGESPGRLVV
                     VFQPHLYSRTRDFAREFAAALTPADVVVLMEIYGAREDPMPGISSQLVADALRELRSD
                     ADVEVISSWSAVAAAVAARTRPGDLVLTVGAGDVTMIGPEILRALGQA"
BASE COUNT          296 a          622 c          576 g          249 t
ORIGIN      
        1 gttgatggcg atgaactcga cgcccttgag gccgacctcg atcatgcggt tgatcgcatt
       61 gacgccaccg ccgccgatgc cgacgacctt gatgacggcc aagtagttct gtggtgctgc
      121 cacggcgtgg gcctctcctg atgtgatgct cgagcggtac ggtgcctcaa cctgaagttg
      181 agagttagac ttatgtcaat ctccgtgccg ccgacgctat gccgcgcagg gagcacaggc
      241 aaacgattcg gccgcgtgtc gcagcacgga ttggaccgat ccgcgcctgg agcgggaccg
      301 tcgtcgacac gagtatccca ccagccacat gggccacttc agccccaccc cctgcgagcc
      361 caccattcag cgggtcagcg ggtcacggga gtgtcggggg cgctgacgtc caccacatgc
      421 ggagcggcct tcagcagtgc ggtcatgatg gtgagcttcc gctcgggcgc atccacccca
      481 ccccacacca cctgcgtggc accgatcgtc agcgtgacga ggtcggcact actcaccacc
      541 acgcgagtga ctcgtcgctg caggctcgcg ggcagcaccc ggaccacggt cacggcagtc
      601 atgagcgcgt cccgcgacag ggccgcctgg cttgccgcga acaccaccgg cacgccgcgc
      661 ggaacagcgt tgacccgggc gtacgccagg ccgctcgcat ctacaacctg tagttgacct
      721 tgagggttct tgacgaccag gaaggggact ctgggactcg catggatgac cagggtgctc
      781 ggccaggagc gctcgatcga cacatcggcc agcgtcgcga gctggccgac gcgggaggtc
      841 accgcggcgc tgtccacgcg cgccatcggc tgccccagcg gcacctgcgc cagtgtccgg
      901 atcgcggcga cctcggactg tggcactccg acgacctcga cacttcggac cgcgaggagc
      961 gggctgaacc ccaccaccca gaccaggagg gtcaccaccg ccacgacgcc ggcgacgtat
     1021 ccggtgagcc gccaagggcg gcggcgcacc tcctgggcgc gcacatggaa gcgcgcccgc
     1081 gacgacgcca ggccggtccg gggatgctgg cgggtcatgc ctgacccaga gcgcgcagga
     1141 tctccgggcc gatcatcgtc acgtccccgg ccccgacggt gagcaccagg tctcccggcc
     1201 gggtgcgggc cgcaacagcc gcagcaaccg cggaccagga cgagatgacc tcgacgtcgg
     1261 cgtcagagcg gagctcgcgg agcgcgtcgg ccaccagctg cgaagagatg ccgggcatgg
     1321 ggtcctcgcg cgcgccgtag atctccatca gcaccacgac gtcggctggc gtgagagcag
     1381 cggcgaactc gcgcgcgaag tcccgggtgc gcgagtacag atggggctgg aagaccacca
     1441 ccaaccgtcc tggcgactcc cccgcgcgga cgagctctgc gcccgtcccg accaccgccg
     1501 cgaccttgcc cgggttgtgc gcgtagtcgt cgacgacgga cacgccgcct tcggatccct
     1561 tcggctcgaa gcgtcgacga gttccggtga acccgaacag accctccagg acccgttccg
     1621 gctcctggcc aagcccttcg accgccgtcg tgtaggcagc cgcggcgttg agaaggttgt
     1681 gccgcccggg aatgttgatc cgcaggatcc gagccacccc atccggcccc gtgatgctgg
     1741 tgt
//
LOCUS       DASYFY010000460         1504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_243718, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000460 DASYFY010000000
VERSION     DASYFY010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243718"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1173
                     /locus_tag="VGN19_09285"
     CDS             <1..1173
                     /locus_tag="VGN19_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196121.1"
                     /translation="VLLRTEFKFLADRRTKCVSRATVERLARIDGISLPEWLYQVLDD
                     GLHFSAVESVADAGEREVFDVSVPITHAFVANGIVNHNTVNLPEDVTVEDIEQLHLDA
                     WRMGIKAVAIYRDNCKVAQPLSTTKKAGALGEGGDFAPPGSEAEAKDRAAAVRIAELE
                     AALSHEQGRARDTVVVGAVRERLPRRRKSSTFSFRVADCEGYVTVGEYDDGRPGEVFM
                     KVSKQGSTLAGIMDAFSIAISLGLQHGVPLATYVRKYTNMRFEPAGMTDDPELRIAQS
                     LVDYIFRRLAVDYLPYEDRVELGVLTSQERTQMTLPGLEEATTRNAPLDAGPAPVEEP
                     TLPPAPVETGHHSSVEFRAPGVVESDAPYCFQCGVQMQRAGSCHACPSCGTTSGCS"
     gene            1240..>1504
                     /locus_tag="VGN19_09290"
     CDS             1240..>1504
                     /locus_tag="VGN19_09290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196122.1"
                     /translation="MTPLALFLAVFLACAVEAVEATTIVLAAGTARDWRSAFTGTALA
                     IVALAAVIAALGPALQTVPLRGLRLVVGGLLLIFGLQWLRKAIL"
BASE COUNT          235 a          514 c          519 g          236 t
ORIGIN      
        1 gtgctcctcc ggaccgagtt caaattcctg gccgatcgcc gcaccaaatg cgtctcacgg
       61 gctacggtcg aacggctagc gcgcatcgac ggaatctcgc tccccgagtg gctgtaccaa
      121 gtgctcgacg acggcctcca ctttagcgcc gtcgagtccg ttgccgatgc gggcgagcgc
      181 gaggtgttcg acgtgtccgt gccgatcacg catgccttcg tcgcgaacgg gatcgtcaat
      241 cacaacacgg tgaacctgcc tgaggacgtg accgtcgagg acatcgagca gctgcacctc
      301 gacgcctggc gcatggggat caaggccgtc gccatctacc gcgacaactg caaagtcgct
      361 caacctctgt ccacgacgaa gaaggcaggt gctctcggcg agggaggaga cttcgcgccg
      421 ccggggtccg aggccgaagc aaaggaccgg gccgctgctg tccggatcgc cgagctcgag
      481 gctgcgctct cccacgagca gggccgggcg cgcgacacgg tggtggtcgg ggcggtcaga
      541 gagcgcctgc cgcggcgacg caagtcgagc accttctcgt tccgggtggc ggactgcgag
      601 ggatacgtga ccgtcggcga gtacgacgac ggccgtcccg gtgaggtgtt catgaaggtg
      661 tccaagcagg gttcgaccct cgccgggatc atggacgcct tctcgatcgc cataagcctg
      721 ggcctgcagc acggggtgcc gctggccacc tacgtgcgca agtacaccaa catgcgtttc
      781 gagccggccg gcatgaccga cgacccggag ctgcgcatcg cccagtcgct ggtggactac
      841 atcttccgcc ggctggccgt cgactacctg ccctacgagg accgggtcga gctgggcgtg
      901 ctcacctcac aggagcgcac ccagatgacc cttccgggcc tggaggaggc gaccacccgc
      961 aacgccccgc tcgacgccgg cccggcgccg gtcgaggagc ccactctgcc gccggcgccc
     1021 gtggagaccg ggcaccacag ctcggtggag ttccgggccc ccggagtggt cgagtccgat
     1081 gcgccctact gcttccagtg cggggtgcag atgcagaggg ccggcagctg ccacgcctgc
     1141 ccgtcctgcg ggacgaccag cggctgctca taggagggga ggaggagggg cgtcagcggc
     1201 tgctcatagg aggggagtca gcggccgtag gatcccgtcg tgacgccgct ggccctcttc
     1261 cttgccgtct tcctcgcttg cgcagtggag gcggtggaag caacgaccat cgtcctggcc
     1321 gccggcaccg cccgcgactg gaggtcggcc ttcaccggga ccgccctcgc gatagtcgcg
     1381 ctggccgccg tgatcgctgc cctagggccg gcactgcaga ccgtgccgct ccgagggctc
     1441 cgtctggtgg tcggcggtct gctgctcatc ttcggcctgc agtggctgcg caaggcgatc
     1501 ctgc
//
LOCUS       DASYFY010000461         3857 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_295803, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000461 DASYFY010000000
VERSION     DASYFY010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295803"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..670
                     /locus_tag="VGN19_09295"
     CDS             23..670
                     /locus_tag="VGN19_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196123.1"
                     /translation="MVIKVFLLDDHEIVRRGLRELLEASTGFEVVGESGLAQEAARRI
                     PALRPDVAVFDVRLPDGSGIEACRQVRSVDPSIKGLILTSYDDQQALATAVLAGASGF
                     LLKDIKGNGLVEAIQRVAAGENLLDTEQARRLRATWSQGDETDPRLRALSPQERRILE
                     HVAAGMTNRQIGESMSIAEKTVKNYVTSVLAKLGMERRTQAAVYAATHQPHKPTS"
     gene            complement(705..1886)
                     /locus_tag="VGN19_09300"
     CDS             complement(705..1886)
                     /locus_tag="VGN19_09300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA hydrolase/transferase C-terminal
                     domain-containing protein"
                     /protein_id="HEV7196124.1"
                     /translation="MVVGGNAAVPWDLLAMVDRSLEEFHLFMLNAPTGIPIRPGIVHE
                     SPFVGPGMRMLSSLRYIPSRLSQVPQLFTTVAPPDVVCVHTSAPSAGMVSLGVEVNIL
                     PAAIEAARARGALVLAQLNPAMPYTYGDAEIPLSSIDASLWVERPIADTGNDGGRVGP
                     PQTAALSRLGRVVSDRIRDGSVLQLGIGRVPDAVLPGLLARRDLGIWSEMISDGVMSL
                     EQAGALSADQSIVASFVMGSSQLYKWADRNERLRLLRTETTNDPALIARNTAMVSVNT
                     ALQVDLFGQANACRIRGRIHSGFGGQIDFIEGALHAPGGQALMALQSWHPKADTSTII
                     PLIDEPVTSFQHTAVITEQGVAEIWGNDERTQAQELIERAAHPSVRAELWEEARALGL
                     A"
     gene            complement(1958..3334)
                     /locus_tag="VGN19_09305"
     CDS             complement(1958..3334)
                     /locus_tag="VGN19_09305"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7196125.1"
                     /translation="MTLGLTFLGAAGTVTGSKFLLEQGDSRVLVDCGLYQGERQWRRM
                     NWEPLGREPSTITDVVLTHAHLDHCGYLPALVRQGFTGPVWATAGTCELADIVLRDSA
                     HLQEEEALFAQRSGYSRHDPPQPLYTVADAERSVRQLQPCDYGHPTTLRSGAQLNLSR
                     AGHVLGSASALVSLGDAQVLFSGDLGRPQHPLLLPRCSPPVSRTVVIESTYGDRAHPG
                     ADAQDHEVLGDAIRRTIGRGGSVVIPAFAVDRTELVLLALARLQTAGSIPEVPIYVDS
                     PMALAALDVYQRPDLAGELRPEGLQDLAGLRGVREARSPDDSKRLNNPGRPCIIVSAS
                     GMATGGRVVHHLASLLPHPDNTVVLTGYQAVGTRGRALQEGARQVKIHGQYVRVRAEI
                     VVDSTFSVHADASELVAWLGEMPEPPETVYVVHGEPDASAALAEQVRTSLDTTVVVPR
                     LGERVVVS"
     gene            complement(3399..3833)
                     /locus_tag="VGN19_09310"
     CDS             complement(3399..3833)
                     /locus_tag="VGN19_09310"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEV7196126.1"
                     /translation="MTTEQDSGSIPTDHTGLRVLTFDECLARLAECPVGRIAFVHDGE
                     IDVLPVNHTVQGLNIYFRTQGGSKIEAAVNGDRVSFEADSYDQQTKDAWSVLVHGNAE
                     VVDDPEDLRRLEPIAREPWVPRDSSEMTWIRVRSTAITGRAL"
BASE COUNT          630 a         1264 c         1336 g          627 t
ORIGIN      
        1 ccatggagat ggtgagccga ctgtggtgat caaggtattt ctcttggacg atcacgagat
       61 cgtccgccga ggtctgcgcg agctcctcga ggccagcacc ggcttcgagg tggtcggcga
      121 gtccggcctg gcccaggagg ccgcgcggcg tattcccgcc cttcggccgg atgtggcggt
      181 gttcgacgtg cggttgccgg acggctccgg catcgaagcg tgtcgtcagg tgcggtccgt
      241 cgacccgtcg atcaaaggac tgatcctcac gtcgtacgac gatcagcagg cactggcgac
      301 ggctgtcctg gcgggcgcat ccggcttcct gctcaaggac atcaaaggca acggccttgt
      361 cgaggcgatc cagcgcgtcg ccgccgggga gaacctgctc gacacggagc aggcgcgcag
      421 gctgcgcgcg acctggagcc agggcgacga aaccgaccct cggctgcgcg cgctgagccc
      481 tcaggagcgg cgaatcctcg agcacgtggc ggccggcatg accaaccgac agatcggtga
      541 gtcgatgtcg atcgcggaga agaccgtgaa gaactatgtg acgtcggtac tggccaagct
      601 cggcatggag cggcgcaccc aggcggcggt gtatgccgcg actcaccagc cccacaagcc
      661 gaccagctga cccggttgcg ctcaaggctg ctaggcaggg ctggttaggc aagtcccaga
      721 gcccgcgcct cctcccacag ctccgctcgg accgacgggt gtgctgctcg ttcgatcagc
      781 tcctgggctt gcgtgcgctc gtcgttgccc cagatctcag ccacgccttg ctccgtgatg
      841 accgccgtat gctgaaaaga ggtcaccggc tcgtcgatca gggggatgat cgtggacgtg
      901 tcggccttcg ggtgccacga ctgcagggcc atcagggcct gcccaccagg ggcatgcaag
      961 gcaccttcga tgaagtcgat ctggccaccg aaaccggaat ggattcgccc gcggatgcgg
     1021 caggcgttgg cctggccgaa gaggtccacc tgaagggccg tgttgacgct gaccatcgcc
     1081 gtgttgcgcg caatgagggc cgggtcgttc gtcgtctcgg tccgcagcag tcgcagacgc
     1141 tcgttgcggt cagcccactt gtacagctgc gaggagccca tcacgaagga ggcgacgatg
     1201 ctctggtcag cactcagcgc gcccgcctgc tccagggaca tgaccccatc ggagatcatc
     1261 tcgctccaga tccccaggtc gcgtcgggcg agcaggcctg gcagtacggc atctgggact
     1321 cggccgatgc cgagctggag tacggagccg tcgcggatgc ggtccgagac caccctgccc
     1381 aaccggctca gagcggctgt ctgcgggggg ccgacgcgcc ccccatcgtt ccccgtgtcc
     1441 gcgatgggcc gctcgaccca cagggacgcg tcgatgctcg acaaggggat ctccgcgtcg
     1501 ccataggtgt acggcatcgc ggggttcagc tgggccagga ccagcgcccc tcgtgcgcgg
     1561 gccgcctcga tcgcggcggg gaggatattg acctccacgc ctaggctgac catcccggcc
     1621 gacggcgctg atgtgtgaac acacaccacg tcgggtgggg cgaccgtggt gaagagctgc
     1681 gggacctgtg acagccggga cgggatgtac cgcaagctgc tcagcatgcg catacccggt
     1741 cccacgaacg gggactcgtg cacgatccct ggcctgatgg gtatgccggt cggcgcgttg
     1801 agcatgaaca ggtgaaactc ctcgagggac cggtcgacca tggccaacag gtcccaggga
     1861 accgcggcgt tcccgccgac gaccacgcgc ggcgctgacc ctatggaccg gccgtacgat
     1921 cgcaggaggg cttccgacac agtgcgcgtc gggggcatca ggaaaccacc acgcgctcgc
     1981 cgaggcgagg aacgacgacc gtcgtgtcga ggctggtcct gacctgttca gccagggcgg
     2041 cgctggcgtc tggctcgcca tgcacgacgt agaccgtctc aggaggctcg ggcatctctc
     2101 ccagccaggc gaccagctcg gaggcgtccg cgtggaccga gaacgtgctg tcgaccacga
     2161 tttcggcgcg cacccggacg tactggccgt gaatcttgac ctgtctggcg ccctcctgga
     2221 gcgcccggcc gcgggttcct acagcttggt accccgtgag caccacggtg ttgtccgggt
     2281 gtggcagcag gctggcgaga tggtggacca cgcgaccacc agtggccatt cctgatgcgg
     2341 agacgatgat gcacggccga cccgggttgt tgagccgttt ggagtcgtct ggggagcgcg
     2401 cctcgcgaac cccgcggagc cccgccaggt cttgcaggcc ctccggacgt agctcgccgg
     2461 ccaggtctgg tcgctggtag acgtcgagtg ctgccagcgc catcgggctg tccacgtaga
     2521 tggggacctc ggggatcgag cccgccgtct gcagacgagc gagggcaagc aggaccagct
     2581 cggtgcgatc cacggcgaag gccgggatga ccacagaacc tccgcggccg atcgtgcggc
     2641 gaatcgcatc cccgagtacc tcgtggtcct gcgcatccgc cccggggtga gcgcggtcgc
     2701 cgtaggtcga ctcgatcacc accgtccgcg agaccggcgg tgagcagcgc ggaagcagca
     2761 gcgggtgctg gggtcgaccg agatctccgg aaaacagcac ctgggcgtca ccgaggctca
     2821 ccagggcgga tgcggagccg aggacgtgcc cggctcgaga caggttgagc tgagcgccag
     2881 agcgaagggt cgtcgggtgc ccgtagtcgc acggctgcag ttgacgcacg gagcgttcgg
     2941 cgtcggccac ggtgtatagc ggctgcggcg ggtcgtggcg tgaatagcct gagcgctggg
     3001 cgaacagcgc ctcctcttcc tgcagatggg cgctgtcgcg caggacgatg tcagccagct
     3061 cgcaggtccc cgcggtcgcc cagaccggtc cggtgaagcc ttgccgaacc agagccggca
     3121 ggtaaccgca gtggtcgagg tgggcgtgtg tgagcaccac atcggtgatc gtgctcggct
     3181 cccggcccag cggctcccag ttcattcgac gccactgccg ttcaccctgg tagaggccac
     3241 agtccacgag cacccgtgag tcgccctgct cgagcaggaa cttgcttccg gtcactgttc
     3301 cggctgcgcc cagaaaagtc agtccgagcg tcatctcagg ctcctatgtc ggatcggctg
     3361 gcggcgcgca atgggcaggg accttgggcc cgcggccgtc acaacgcccg accggtgatg
     3421 gccgtcgagc ggaccctgat ccaggtcatc tccgacgagt ccctggggac ccacggctcg
     3481 cgggcgatcg gctcgagccg ccgaagatcc tctgggtcgt cgaccacctc ggcgtttccg
     3541 tggacgagga cactccacgc gtccttggtc tgctggtcat agctgtccgc ctcgaacgac
     3601 acgcggtcgc cattcacggc ggcttcgatc ttcgaaccgc cctgcgttcg gaagtagatg
     3661 ttcagtccct gaaccgtgtg gttcaccggg agcacatcga tctcgccgtc gtgcacaaag
     3721 gcgatcctgc cgacagggca ctcggcgagc ctggctaggc attcgtcgaa ggtgaggacg
     3781 cgcaggcccg tgtggtccgt ggggatgctg ccgctgtcct gttcggtggt catgtctcaa
     3841 gggtcgttct tggcgcc
//
LOCUS       DASYFY010000462         3543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_453233, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000462 DASYFY010000000
VERSION     DASYFY010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453233"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..964)
                     /locus_tag="VGN19_09315"
     CDS             complement(<1..964)
                     /locus_tag="VGN19_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020017986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 130 protein"
                     /protein_id="HEV7196127.1"
                     /translation="MTQNAFPHAEFPLGPFTAYEGNPILRPQGDTWESASVYNPAAVV
                     KDGKVVLLYRAHADDIVSHVGLATSEDGIHFERHPEPVLSPTEDYEKFGAEDPRVVEI
                     DGTYYLTYTGWDHTSAQLCLATSTDLYNWTKHGPMFPEFNTFLPVGNGSDAPWSKAGA
                     ILPVPINGRYLMYFGEGSIYYAWSDDLIHWTPCSNDEPIMVPTPPGTFGSFLVEVGPQ
                     PIITNNGLILLLHNAAVKNDDGTVRYTCGQLLFSPDDPTTILAQMNRPWLEPATYEDT
                     HGLVSNVTFVEGLVFFRDTWFAYYGQSDSTLGVATYQVGDTYALK"
     gene            complement(1055..3139)
                     /locus_tag="VGN19_09320"
     CDS             complement(1055..3139)
                     /locus_tag="VGN19_09320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196128.1"
                     /translation="MTSTKVRNGRRSATGAWVAGATAALAAVLATASTGVASAQTAID
                     APSVTRSATAPLTNLAHLDWLGARVTPPNQPGHTTYHLADQPQLGTLWTYAEPDGTGG
                     FRHVGGGTYNPTTNTYGQGAYNADDMSRAAVVYLRHWRATGSTSSRTSAYEMLRGLTY
                     LQTADGSNAGNVVLWMQADGTLNPSPQPKELPDPSDSDASYWLARTIWALGEGYSAFR
                     TTDPAFASFLGQRLNLAVSALNRECLARYGQYLAVDGQRAPAWLIASGADASAEAVLG
                     LSAYVEAGGSSGARTALARLSEGVADLSSGDAQTWPFGAIRPWTLSLSMWHAWASQMP
                     AALAGASRVLGDSHLADVAAKDSFTFDPWLLTSGGLDNGRLPTRGDSSQIAYGADSRL
                     ESLLATGQGAREQAAHRLAGIVGAWFFGANPAGVPMYDPATGVTYDGISSNGSVNHNS
                     GAESTIHGLLAMLALDAHPDVAALAKTATISQRIGTTTVEAEQASLTGGAQAVAPPSL
                     WTGEAQFSGTGYVAAPSGGHLTFTLPAGRASLVLPVVDLQPGSSAVTTFTTGDRALGQ
                     VHSGDIGPQGDSPAPGALLPVTLPGTISPGTTQLSATTTATGGDAARLDALMVEPLVS
                     RLVLSGDGHSTAVLSSRSRSAEHAQVMLPGAGSAQVETYDGSGRLVSSWSSPARTVPV
                     TVPAGGFTYIRR"
     gene            complement(3136..>3543)
                     /locus_tag="VGN19_09325"
     CDS             complement(3136..>3543)
                     /locus_tag="VGN19_09325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196129.1"
                     /translation="ARFVEHLPSRVAEVMHVDGYRLDPQARITARVRRDAAGSSQARG
                     RGVPLDVPHHVRVQLTLGGPSAKAKVYAESVRAAMADLVNAVTTGSTPFSSVREGAAA
                     VAVAAAATRASRDGRSVEITDHSRTTATRARTA"
BASE COUNT          527 a         1115 c         1335 g          566 t
ORIGIN      
        1 gcttgagggc gtaggtgtcg ccgacctggt aggtggccac gcctagggtc gagtcactct
       61 ggccgtagta ggcgaaccag gtgtcgcgga agaacaccaa gccctccacg aaggtgacgt
      121 tcgagaccag gccgtgagtg tcctcatagg tcgccggctc cagccacgga cggttcatct
      181 gcgccaggat cgtcgtcggg tcgtccgggg agaacagcag ctgcccgcag gtgtagcgaa
      241 ccgtgccgtc gtcgttcttc acggctgcgt tgtgcagcaa cagaatcagg ccgttgttgg
      301 tgatgatcgg ctgggggcca acctccacca ggaaggagcc gaaggtgccg ggcggtgtgg
      361 gcaccatgat cggctcgtcg ttggagcagg gcgtccagtg gatgaggtcg tccgaccacg
      421 cgtagtagat ggagccctca ccgaagtaca tgaggtagcg gccgttgatc ggcacgggga
      481 ggatcgcccc ggccttgctc cagggcgcgt ccgagccgtt gccgacgggc aggaacgtgt
      541 tgaactccgg gaacatcggg ccgtgcttgg tccagttgta caggtcggtc gaggtcgcca
      601 ggcacagctg cgcggacgtg tggtcccagc cggtgtaggt caggtagtac gtgccgtcga
      661 tctccacgac gcgcgggtcc tcggccccaa acttctcgta gtcctcggtc ggggagagca
      721 cgggctccgg gtgtcgctcg aagtgaatcc cgtcctcgct cgtcgccagg ccgacatggg
      781 aaacgatgtc gtcggcgtgg gcccgataga gcagcaccac cttgccgtcc ttgaccacgg
      841 cagccgggtt gtagacactc gctgactccc acgtgtcccc ctgcgggcgc aggatcgggt
      901 tgccctcata ggcagtgaac gggcccagcg ggaactcggc gtggggaaag gcgttctgtg
      961 tcatgtctcc tcattcattg gggatgtggc tctggggcgc gccgctcgaa tgcggcccgg
     1021 taaccccggc tcggggatac ggctttcggg tggtctagcg acggatgtag gtgaagcctc
     1081 ctgcgggaac cgtgacgggc actgttcgcg ccgggctgga ccaggagctg acgagccggc
     1141 cgctgccgtc gtaggtctcc acctgcgcgg aaccggcgcc aggcagcatg acctgggcgt
     1201 gctcggcgct gcgtgacctg ctcgacagga ctgcggtgga atgtccgtct ccgctgagca
     1261 ccaaccgaga gacgagcggc tccaccatca gcgcgtccag cctggccgcg tcccctccgg
     1321 tggcggtcgt ggtcgcggag agctgggtgg ttcccgggga gatggtgcca ggcaaagtca
     1381 cggggagcag cgctccgggt gccggagagt cgccctgcgg accgatgtca cccgagtgca
     1441 cctgtcccag ggcccggtcg ccggtcgtga acgtggtgac ggctgagctc ccgggctgca
     1501 ggtcgacgac cggtagcacc agcgacgccc ggccggcagg cagggtgaac gtcaggtgcc
     1561 caccactagg cgccgcaacg tagcccgtgc cggagaactg cgcctctccc gtccagagcg
     1621 aggggggcgc gacggcttgg gcgccgccgg tcaggctggc ctgctccgcc tcgaccgtcg
     1681 tcgtgccgat gcgctggctg atggtggcag tcttcgcgag ggccgcgacg tccgggtggg
     1741 cgtccagcgc gagcatggcc agcagcccat ggatcgtgga ctcggcaccg gagttgtggt
     1801 tgaccgagcc gttgctggag atgccgtcat aggtgacccc ggtggcaggg tcatacatgg
     1861 gcacgccagc ggggttggct ccgaagaacc aggcccccac gatgcctgcc aggcgatggg
     1921 cggcttgctc tcgagctccc tggccggtgg cgagcaggga ctccaggcgc gagtcggcgc
     1981 cataggcgat ctgtgaggag tcgccgcggg tgggcagccg accgttgtcg aggccgcccg
     2041 aggtaagcag ccaggggtcg aaggtgaagg agtccttggc cgccacgtcc gccaggtgcg
     2101 agtcacccag gacgcgcgac gcaccggcca aggcagcagg catctgggag gcccaggcat
     2161 gccacatcga cagggagagg gtccagggcc ggatcgcgcc gaacggccag gtctgggcgt
     2221 ctccgctcga gaggtcggcc acgccctcac tcagtcgcgc caaggcggtc cgtgcaccgg
     2281 acgacccgcc ggcttcgacg taggcggaaa ggcccagtac ggcctcggcg ctcgcgtccg
     2341 cgccgctggc gatgagccag gccggtgcgc gctggccgtc gaccgcaagg tactggccgt
     2401 agcgcgccag gcactcccga ttgagagcgc taacggcaag gttgagccgc tgtcccagga
     2461 aggatgcgaa ggcagggtcg gtggtgcgga aggcggagta gccctcgccg agcgcccaga
     2521 tggttcgtgc cagccagtag gacgcgtcac tgtcggaggg gtcgggcagc tccttcggct
     2581 gggggctggg gttcagcgtg ccgtcggcct gcatccacag gacgacgttc ccggcgttcg
     2641 agccgtcggc ggtctgcagg taggtcagcc ctcggagcat ctcgtaggcg ctggtgcggc
     2701 tggacgtcga tccggtggcg cgccagtggc gcaggtacac cacggcggcc cgggacatgt
     2761 cgtccgcgtt gtaggcgcct tgcccatagg tgttggtcgt ggggttgtag gtaccgccgc
     2821 cgacgtggcg gaaacctccg gtgccgtcgg gctcggcata cgtccaaagc gtgccgagct
     2881 gcggctggtc cgcgaggtgg tacgtggtgt gtccgggttg gttcggaggc gtcaccctgg
     2941 cacccagcca gtcgaggtga gcgaggttcg tcagcggcgc cgtcgccgac cgcgtcactg
     3001 acggtgcgtc gatagccgtc tgggcggatg cgacgccggt ggacgcggtg gcgagcaccg
     3061 cagcgagagc tgcggtcgcg cccgccaccc aggcgcctgt ggcagaccgg cggccgttgc
     3121 ggaccttcgt ggaagtcatg ctgtcctcgc tcgggttgcg gtggtgcggg agtggtcggt
     3181 gatctcgaca gacctgccgt cgcgcgacgc gcgcgtcgcg gctgccgcga cggcgaccgc
     3241 tgcggctccc tcgcgaacgg agctgaacgg ggtcgagccg gttgtcaccg cgttcaccag
     3301 gtccgccatg gccgcgcgga cgctctcggc atacaccttg gccttggcgg aggggccgcc
     3361 gagggtgagc tgcacgcgaa cgtggtgcgg gacgtcgagc ggaacacctc tgccgcgagc
     3421 ctgcgaggag cctgcggcgt ctcggcgtac ccgggcggtg attcttgcct gggggtcgag
     3481 gcggtaaccg tcgacgtgca tgacctccgc cacccgcgac ggcaggtgtt cgacaaagcg
     3541 agc
//
LOCUS       DASYFY010000463         2051 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1085325, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000463 DASYFY010000000
VERSION     DASYFY010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085325"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..537)
                     /locus_tag="VGN19_09330"
     CDS             complement(178..537)
                     /locus_tag="VGN19_09330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein RbpA"
                     /protein_id="HEV7196130.1"
                     /translation="MAERTLRGSRLVSHSLETDEHVVPSERQITAYVCAQGHRTELPF
                     SIEAEIPSTWECRCGLDARLVDGPEPEAKQVKHVRTHWDMLLERRSIPELEELLEERL
                     VLLRESRGEKPRRKRTA"
     gene            812..>2051
                     /locus_tag="VGN19_09335"
     CDS             812..>2051
                     /locus_tag="VGN19_09335"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7196131.1"
                     /translation="MSIPTDLSEVDDLELTSRAREGEESAVIELWTRHYPAALSTARR
                     VARQPRDAEELAADAFSGMLVALSTGGGPTGSVRSYLLTSVRNGMASRARRANASDVL
                     TGENTLLENAAEVPRDPVAAHSELSLVREAFSALPSRWRHVLWRTAVEHESNITVARE
                     MGLSPNAVAALARRARRGLRAAYVQVHVSRGAVDPKCLPFVGGLAALLGGPPNDGSDV
                     AEHVRGCTRCTERLAELRRVDRNLAGVLTPAVLSLLPHEGTVSLGAAAPGVGSAVGSS
                     APAQAAEAFASKAAVVVLTAGVALWAAWPPTHAHRGSEVGAPLPVVTATTPVISPTSP
                     VPPPTATSPTTRTTPPRSTTAPSNSPTSLSPPPTVVTLPTAPSSVPSTVPPTTPATAS
                     PGQLSAVMAVGGPNAAPFFQV"
BASE COUNT          299 a          744 c          686 g          322 t
ORIGIN      
        1 ggctgcagtc gcccgccggc tgctgggcgg tctggtcagc cggtggccag gcgggggacc
       61 ctctggccca cagcccggcg ggtcaggccc ggatatcatc gagggtgagg tgctctgatc
      121 tcctgggcct gatgaagggc cgcacccctg gggtgcggcc cttcgtcagc tggtctgtca
      181 ggcggttcgc ttgcgcctgg gcttctcacc gcgcgactca cggagcagga cgagtcgctc
      241 ctcgaggagc tcctccagct cggggatgga gcgacgctcg agcagcatgt cccagtgggt
      301 ccgcacgtgc ttgacctgct ttgcctcggg ctctgggccg tcgaccagcc gggcatcgag
      361 tccgcagcgg cactcccagg tggacgggat ctccgcctcg atcgagaagg gcagctcagt
      421 gcggtggccc tgcgcacaca cataggccgt gatctgccgc tcgctaggga cgacatgctc
      481 gtccgtctcg agactgtgcg agacgaggcg gctgccccgg agggttcgtt ctgccatgag
      541 ggggttctcc caacgttctg gtttcccggc ccgctctggg tgggggcacg ggatgcactc
      601 cacataacga cgcggagccg tgcaatgttc cgacgaggta gagcccatga acgttgttga
      661 gtgtgacgca agtcacttag cgtcatcagc agcgacctga agcgtctccg tgtggttagc
      721 cccgacccca ggagatgcgt atgtccagcg acgcgtggag cgacgcccta gcgagccgcg
      781 cctgcacacc cgacgtcgct ggccggggga catgagcatc cccacagacc tgtccgaggt
      841 ggacgacctc gagctcacgt caagggcacg tgagggcgag gaaagcgcag tcatcgagct
      901 gtggacgcgc cattatcccg ccgccttgtc cacggcacgc cgggtcgctc gccagccacg
      961 cgacgcggag gagctcgcgg cggacgcctt ctcggggatg ctcgtcgcct tgagcacggg
     1021 cggaggcccg accggctcgg tgcgctccta cctgctcacc tcggtgcgca acgggatggc
     1081 gagtcgcgcc cgccgggcca acgcctcgga cgtcctgacc ggcgagaaca ccctcctgga
     1141 gaacgcagcg gaggtgccac gggacccggt ggcggcccac agcgagctca gcctggtgcg
     1201 ggaagccttc tccgccctgc cgtcccgttg gcgacatgtg ctgtggcgca ccgcggtcga
     1261 gcacgagtca aacatcaccg tcgctcgtga gatgggcctg agtcccaacg ccgtggcggc
     1321 actcgcccgg agggcccgcc gggggctccg tgcggcatac gtgcaggtcc acgtctcacg
     1381 gggcgcggtc gatcccaagt gccttccctt cgtcggcggt ctcgccgccc tgctgggggg
     1441 accacccaat gacggcagcg acgtcgcgga gcacgtgcgc ggatgcaccc ggtgtacaga
     1501 gcggctggcc gagctgcgac gcgtcgaccg gaacctggct ggcgtcctga caccggcagt
     1561 actctccctt ctcccgcacg aggggaccgt cagcctgggt gccgcggcgc cgggtgtcgg
     1621 atcggcagtc ggatcctccg caccggccca ggccgctgaa gcgttcgcct ccaaagccgc
     1681 cgtcgtggtg cttacagccg gggtggcgct ctgggcagcc tggcccccta ctcatgctca
     1741 tcgcggctca gaggtcggcg caccgctgcc cgtcgtcacg gcgaccacac ccgtcatcag
     1801 cccaacgtcg cccgtcccac caccgaccgc cacctccccg acgacccgga cgaccccgcc
     1861 gaggtcgact actgcgccct ccaactcccc gacctcgctt agccctccgc ccaccgtggt
     1921 gacgctgccg accgctccgt catcagtccc gagcaccgtg ccccccacca cgccagcgac
     1981 cgcctcgccg ggacaactgt cagcggtgat ggccgttggc ggacccaacg ccgctccctt
     2041 cttccaggtg t
//
LOCUS       DASYFY010000464         1898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_137892, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000464 DASYFY010000000
VERSION     DASYFY010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137892"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VGN19_09340"
     CDS             complement(<1..504)
                     /locus_tag="VGN19_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012037522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase-like domain-containing protein"
                     /protein_id="HEV7196132.1"
                     /translation="MSRPISARTEGYVPIGSYAALGDGRTVALVSEDGRIDWWPLPTL
                     DAPPGFAAIVDPSSGGYVELTPEEPATVERRYLPDTNVLETTFTSESGTARVTDALAV
                     GRSGRLPWSELIRRVEGLEGSVTLLWAVRPGTRFETVRPWTEEKRGALLLYVGDQNLA
                     VRTFDAGE"
     gene            907..1155
                     /locus_tag="VGN19_09345"
     CDS             907..1155
                     /locus_tag="VGN19_09345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196133.1"
                     /translation="MRSVITVREQLVEVNGRIVAGAPKTQSGVRVVEIGERVIEALHL
                     RGRDRPALSYVTKLLGKLVRAAGVRPVRLHDLRTARRR"
     gene            1176..1322
                     /locus_tag="VGN19_09350"
     CDS             1176..1322
                     /locus_tag="VGN19_09350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196134.1"
                     /translation="MAVISKRLGHSSVGITSDIYSHLHQGVGASAAAGTGAAVRPRAT
                     TRTT"
     gene            1726..>1898
                     /locus_tag="VGN19_09355"
     CDS             1726..>1898
                     /locus_tag="VGN19_09355"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0110001 - toxin-antitoxin complex
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEV7196135.1"
                     /translation="MTTFSLADAKAHLSKLVAQVSGQHERVYVTVHGKPSAVLLATAD
                     LESLEETIEILADA"
BASE COUNT          320 a          666 c          647 g          265 t
ORIGIN      
        1 ctcgccggcg tcgaacgtgc gcacggcgag gttctgatcg ccgacgtaga gcaggagggc
       61 gccacgcttc tcctccgtcc acggacggac ggtctcgaag cgggtgcccg gccggacggc
      121 ccagagcagg gtcacgctgc cctccagccc ctccacccgg cggatgagct ccgaccaggg
      181 gaggcggccg ctgcggccga cggcgagcgc gtcggtcacc cgagcggttc ccgactcgct
      241 ggtgaacgtc gtctccagca cgtttgtgtc gggcaggtac cgccgctcga ccgtggcggg
      301 ctcctccggt gtcagctcga cgtagccccc ggaggacggg tcgacgatcg ccgcgaaccc
      361 cggcggggcg tcgagcgtgg gcagcggcca ccagtcgatc cggccgtcct ctgacaccag
      421 tgccacggtc cggccgtcac ccagggcggc gtaggacccg atggggacgt agccctccgt
      481 gcgagcggaa atcgggcgac tcactcgggt acgcccgcgc agcccgagcc ggggcgaccg
      541 caaccgggtc gagaagtaac agttgccata aggcaaatag tgcgggatct cggcaggctg
      601 agccactcgg cgcgggagga gccgggcccg gtcagacgac cgtggcctgc atggtctgat
      661 cggtggcgcg gcactgcgca gggtcagcac ggagctccga agcagggcag gcggcacccg
      721 caagcgcgga ttgggaaccc ggccacctcg acgccgtccg caactcggcc cgctggaccg
      781 tcgccctcgc gctgggcctg cgccagtccg aggccctggc gctgcagtgg aaggacatcg
      841 acctcctcaa caacacgctc acggtgcgac gcagcatcca ccgggtccgc ggcggtggcc
      901 tgatctatga ggagcgtcat caccgtgcgg gaacagctcg tcgaggtcaa cggccgaatc
      961 gttgcgggcg ccccgaagac tcagagcggc gtccgcgtgg tcgagatcgg ggagcgcgtg
     1021 atcgaggctc ttcacctgcg aggacgggac cgacctgccc tctcctacgt cacgaagctg
     1081 ctcgggaagc tcgtcagagc ggccggcgtg cgcccggtgc gcctgcacga cctccgcacg
     1141 gcgcggcgtc gctgatgctc gctcagggcg taccgatggc agtcatcagc aagcggctcg
     1201 ggcactcgtc ggtcgggatc accagcgaca tctacagcca cctccaccaa ggcgtcgggg
     1261 cgtcggccgc cgctggcacc ggggcagcgg tgcgcccacg cgcgaccaca cgcacgacgt
     1321 gatgcgccca catggcccca ggaacgcgag aggcgggccg gacctttcgg tcgacccgcc
     1381 tctgacctgc actttcgctc tgtcgggctg acaggatttg aacctgcgac cccttgaccc
     1441 ccaggcgtgg gccgcgggtt cgcggcggtc cgccgaagtg catttacgca ggtcagcggg
     1501 catacggaac gggtgcggac cgcagcgaac aacctcgaac caggaacaat ggtggtcaaa
     1561 atagtggtca aaaatcgccg ctccgacctg cacggatccg gtgtcccgaa cgccgtagag
     1621 gcatccgctg agcgtggccg cgtaaagagg gtcatacgcc cctcccccgc gacgccttgt
     1681 gaacggggct ggacgacctg atcgaatctg gtcatacttc tgaccatgac gacgttctcg
     1741 ctcgccgacg ccaaagcgca cctgtccaag ttggtggccc aggtcagcgg gcagcacgag
     1801 cgcgtctacg tcaccgtgca cggcaagcct tccgctgtcc tcctggccac agcagacctc
     1861 gagtccctcg aagagaccat cgagatcctc gccgacgc
//
LOCUS       DASYFY010000465         1586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_506139, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000465 DASYFY010000000
VERSION     DASYFY010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506139"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..1153)
                     /locus_tag="VGN19_09360"
     CDS             complement(134..1153)
                     /locus_tag="VGN19_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0070726 - cell wall assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEV7196136.1"
                     /translation="MIDEFEDTEAPPAPRRRGFRLRRAIAVIVAVVLLVVVGGTAAYL
                     LFLNHTVTANVKHESLLPTPGVNGAVAPPAKKPGTANAQNILIIGSDARPGLAGARSD
                     VIVLMHVAGDRKSVTLVHFPRDLYVSVPGHGKDKINAAFAYGGAPLLVQTLQNLVGVP
                     VDHVAIIGFEGFKNMTDAVGGVNVYVEEPSSGGGFTFTTGFQQMGGAAALAFVRERHQ
                     LSEGDISRGRRQQAFIKALMLKSLSGAVLTNPIRLAQFIDAGTKNLTVDKGFSISDMR
                     SEAFSMRNLRGNNISFITAPFTGFGTSPVGGSIDIVDEQGMRDLGDALQNDAMAAYTD
                     KTVTP"
     gene            1210..>1586
                     /locus_tag="VGN19_09365"
     CDS             1210..>1586
                     /locus_tag="VGN19_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEV7196137.1"
                     /translation="MQDIGERLRAQGRRMTPQRQRVLDAVAALGHATPDEVVARVTAD
                     GGPALAPSTVYRALEALESLEVVGHTHLDHRAPSYHLADHADHIHLVCRICGRVEQCP
                     RDLAEDFTGNVLAHNGFVADVTH"
BASE COUNT          242 a          536 c          554 g          254 t
ORIGIN      
        1 gccgctctcg gcggctggac acaggcctag ggcttcgtcg accgagcagc gggaagggcg
       61 ccgaggacgc ctctccagcc gctcccgagt cagcggtcac ccggggcgtc gggaagctgt
      121 cagcccaccg ggctcacggc gtgacggtct tgtcggtgta ggccgccatc gcgtcgttct
      181 gcagcgcatc gccgaggtcg cgcattccct gctcgtcgac gatgtcgatg gacccgccca
      241 cgggggacgt gccgaaaccc gtgaagggcg cggtgatgaa cgagatgttg ttgccccgca
      301 ggttgcgcat cgagaacgcc tcggagcgca tgtcgctgat cgagaaaccc ttgtcgaccg
      361 tgaggttctt ggtgcccgcg tcgatgaact gcgccaggcg gatggggttg gtcaggacgg
      421 ccccgctgag cgacttgagc atcagggcct tgatgaacgc ctgctggcgg cgcccgcggg
      481 agatgtcgcc ctcgctgagc tggtggcgct cgcggacgaa ggccagcgcg gcggcgccgc
      541 ccatctgctg gaagcccgtg gtgaaggtga acccgccgcc gctgctcggc tcctccacat
      601 agacgttcac gccgccgacg gcatccgtca tgttcttgaa gccctcgaaa ccgatgatgg
      661 ccacgtggtc gaccggcacc cccacgaggt tctgcagcgt ctgcaccagc agcggcgcgc
      721 cgccgtacgc gaaggctgcg ttgatcttgt ccttgccgtg tcccggcacg ctcacgtaga
      781 ggtcacgggg gaagtgcacc agcgtcaccg acttgcggtc cccggcgacg tgcatgagga
      841 cgatcacgtc ggacctggcc ccggccaggc ccggccgggc gtccgacccg atgatcagga
      901 tgttctgcgc gttcgccgtc cccggcttct tggcgggggg tgccacggct ccgttgacgc
      961 cgggagtggg gagcagggac tcgtgcttga cgttcgctgt gaccgtgtgg ttcaggaaca
     1021 gcaggtatgc cgcggtgccg cccacgacga cgagcaggac caccgccacg atcacggcga
     1081 tggcgcgcct cagacggaaa ccccgcctgc ggggggccgg cggggcttcg gtgtcctcga
     1141 attcgtcgat caccaccaca gtgtagagaa cccggcggcc tcgtccggca cgaatcgtac
     1201 agtggggtgg tgcaggacat cggcgagcgg ctccgcgccc agggccgcag gatgaccccc
     1261 cagcgtcaac gcgtgctcga cgcggtggca gccctcgggc atgcgacgcc ggacgaggtg
     1321 gtggcacggg tcaccgccga tgggggtcct gcgctggcgc cgtccacggt ctatcgggcc
     1381 ctcgaggcgc tggagtccct ggaggtcgtg gggcacaccc acctcgacca ccgggcaccg
     1441 agctaccact tggccgacca cgccgaccac atccacctcg tctgccgcat ctgcggacgc
     1501 gtcgagcagt gtccgcgaga cctcgccgag gacttcacgg ggaatgttct ggcccacaat
     1561 ggctttgttg ctgacgtgac tcacat
//
LOCUS       DASYFY010000466         2234 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1820313, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000466 DASYFY010000000
VERSION     DASYFY010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1820313"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="VGN19_09370"
     CDS             <1..369
                     /locus_tag="VGN19_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEV7196138.1"
                     /translation="RLLIGLQSVSDADERGMRTVMFTMGGQLRPVQARDENVAVDVKA
                     AEKADPTAKGQVAAPFAGVVSLAVNEGDRVEAGTVVATIEAMKMEANITAAVAGTVSR
                     VAIGSQQQVEGGDLLVVVDA"
     gene            459..632
                     /locus_tag="VGN19_09375"
     CDS             459..632
                     /locus_tag="VGN19_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEV7196139.1"
                     /translation="MGGDDKISNMAEDATGKAKEATGKLTDDESLEAEGKADQTKADL
                     KQAGEKVKDAFGS"
     gene            complement(694..1167)
                     /gene="smpB"
                     /locus_tag="VGN19_09380"
     CDS             complement(694..1167)
                     /gene="smpB"
                     /locus_tag="VGN19_09380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEV7196140.1"
                     /translation="MAKQQGHKVVASNRKARHDYLIEDTFEAGLVLMGTEVKSLRMGR
                     ASLIDGYATFRGDELWLEGVHIPEYVEGTWTNHTPRRRRKLLLHRTELAKIMRKSSES
                     GHTIVPLQLYFKDGRAKVEIAIAKGKRQYDKRQTLRERQDNRDTERALHGRGRDR"
     gene            complement(1216..>2234)
                     /locus_tag="VGN19_09385"
     CDS             complement(1216..>2234)
                     /locus_tag="VGN19_09385"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEV7196141.1"
                     /translation="NRDNDEMAVRLDVAKADEARAVDELTSTRQNLSDSRVRVARFAA
                     QLYQDQGMGQLSVALSATTPDDFANRLAMTDTVMGVQSQSLTRLATAQAAATAQEAHL
                     AALKAQVVAAKKAAEAAVARATAARAAASAAQHELQALATAQLAQSQALQRQKTAEQA
                     QLVRAQKQQARLQAVLVARARAEKAAAAARAAALRRAGQQVPAGPSTSTGFLSPPSDG
                     WISSEFGMRYHPILHYWRLHAGRDYAANCGTPVRAGADGQIIAAGVVSGYGNRIEVDH
                     GVVRGVDLVTTYNHLERFAVTGGSVRRGEVIGYVGTTGESTGCHLHFETYEDGVPRDP
                     RRWL"
BASE COUNT          336 a          750 c          786 g          362 t
ORIGIN      
        1 cgtctcttga tcgggctgca gtcggtgtcg gacgcggacg agcgcgggat gcgcacggtg
       61 atgttcacca tgggtggcca gctccgcccg gtgcaggccc gcgacgagaa cgtcgccgtc
      121 gacgtgaagg ctgccgaaaa ggcggacccg accgccaagg gacaggtggc cgccccgttc
      181 gccggggtgg tcagcctggc cgtgaacgag ggtgaccgcg tcgaggcggg cacggtcgtc
      241 gccaccatcg aggccatgaa gatggaggcc aacatcacgg ccgcggtcgc ggggacggtc
      301 agccgcgtgg ccatcggctc gcagcaacag gtcgagggtg gggatctcct cgtcgtcgtc
      361 gacgcctagc ggcaggctgc ctcattagcg gttttcgtca cgtttcgggt gacctgcgcg
      421 agggtagcgt cgagttaccc aacctaagga gactccgcat gggcggcgac gacaagatca
      481 gcaacatggc cgaggacgcg acgggcaagg ccaaggaagc caccggcaag ctcaccgacg
      541 acgagagcct ggaggccgag ggcaaggcgg accagacgaa ggccgatctc aagcaggccg
      601 gcgagaaggt caaggacgcc ttcggcagct gagccgctcg aaggaagcag tcctactgaa
      661 agccgggccc acgggcccgg ctttcggttc gccctagcgg tcgcgccctc gtccgtgcag
      721 ggcccgttcg gtgtcgcggt tgtcctggcg ctcccgcagc gtctggcgct tgtcgtactg
      781 gcgcttgccc ttggcgatgg cgatctcgac cttggctcgt ccgtccttga agtagagctg
      841 caaggggacg atcgtgtggc cactctcgga ggacttgcgc atgatcttgg ccagctccgt
      901 gcgatggagc aggagcttgc ggcgacggcg gggagtgtgg ttggtccagg tgccctcgac
      961 gtactcgggg atgtgcaccc cctccagcca cagctcatca ccgcggaagg tcgcgtagcc
     1021 gtcgatgagc gaggcccggc ccatccgcag cgacttcacc tcggtgccca tgaggaccag
     1081 accggcctcg aaggtgtcct cgatgaggta gtcgtgacga gccttgcggt tgctcgcgac
     1141 caccttgtgc ccctgctgct tggccacgtg ctcagtcctc tgtcggggtc atcgttgttg
     1201 ggtgactgcc ccacgttaca accagcgtcg cggatccctc ggcacgccgt cctcgtaggt
     1261 ctcgaagtgc aggtgacacc ccgtcgactc gcccgtggtg ccgacgtagc cgatgacctc
     1321 accccggcgg accgagccgc ccgttaccgc gaaccgctcc aggtggttgt acgtcgtcac
     1381 caggtccaca ccacgcacga ccccgtggtc gacctcgatc cggttgccat agccgctgac
     1441 cactccggcc gcgatgatct gaccgtcggc gccggccctg accggggtgc cgcagttcgc
     1501 ggcatagtcc cggccggcgt gcaggcgcca gtagtgcagg atcgggtggt accgcatccc
     1561 gaactccgag gagatccagc cgtcggaggg cggcgacaga aagcccgtgg atgtactcgg
     1621 accggcgggg acctgctggc cagcgcgacg cagtgcggcc gcacgggctg cagccgcggc
     1681 cttctcggcc ctggctcgcg ccacgaggac ggcctggagc cgcgcctgct gcttctgcgc
     1741 ccggacgagc tgagcctgct cggccgtttt ctgacgttgc aacgcctggg actgcgcgag
     1801 ctgcgcagtc gccagtgcct gcagctcgtg ttgcgccgcg gaagcggcgg cccgagccgc
     1861 tgtggcccgg gcgacggcgg cctctgccgc cttcttcgcg gcgaccacct gcgccttgag
     1921 cgccgcgagg tgagcctcct gagccgtcgc ggcggcctgt gcggtagcca accgcgtcaa
     1981 agactggctc tgcacaccca tcaccgtgtc ggtcatagcc aggcggttcg cgaagtcatc
     2041 gggcgtcgtg gcactgaggg cgaccgacag ctgccccatg ccctggtcct ggtacagctg
     2101 ggcggcgaag cgagcgaccc gcacgcggct gtccgagagg ttctgccggg tcgacgtcag
     2161 ctcgtcgacg gcccgggcct catcggcctt ggcgacgtcg aggcgcacgg ccatctcgtc
     2221 gttgtcgcgg ttgg
//
LOCUS       DASYFY010000467         1762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1189726, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000467 DASYFY010000000
VERSION     DASYFY010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1189726"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VGN19_09390"
     CDS             complement(<1..589)
                     /locus_tag="VGN19_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEV7196142.1"
                     /translation="MNALAARRRHPAAIALLLLLGLIVTGLAYSAFAPRPAAAASATA
                     DQVEQGKKLFLANCSTCHGMQAQGTSAGPSLAGVGAAAVDFQVGTGRMPLAAPDVQAP
                     RQPRARFNQDDISALAAYVASLAPGPSIPDAQYTSGKNGDVALGGELFRVNCAMCHNF
                     AGSGGALTRGKYAPSLRNIDGRHIYEAMVTGPQSMP"
     gene            complement(651..1352)
                     /locus_tag="VGN19_09395"
     CDS             complement(651..1352)
                     /locus_tag="VGN19_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-copper oxidase subunit III"
                     /protein_id="HEV7196143.1"
                     /translation="MAHVATASAVTSGSSRAVGSIPGHGPVSRPNMVSVGTIVWLSSE
                     LMFFAGLFAMYFTIRSVEPELWAKETGVLNVPYAAINTLVLVISSVWCQLGVHAAEHG
                     KPHRGDLPLISLRGRGLFRSVADWGMREWYVVTYIFGSIFVAGQVLEYSELTSEGITL
                     SANAYGSVFYLTTGFHAMHVTGGLLAFLLIIGRTFTTRHYSHVQAAGAVVTSYYWHFV
                     DVVWIALFATIYLLK"
     gene            1529..>1762
                     /locus_tag="VGN19_09400"
     CDS             1529..>1762
                     /locus_tag="VGN19_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196144.1"
                     /translation="MTASHAPAPDVASAGSAARQISVLLYSDDRTTRDAVRVNVGRRP
                     ARDVEVVSWLECATAPAVIEAVEGSSFDVLILDG"
BASE COUNT          278 a          572 c          661 g          251 t
ORIGIN      
        1 ccggcatgga ctgcgggcca gtgaccatgg cctcgtagat gtgccggccg tcgatgttgc
       61 gcaggctggg ggcgtacttg ccccgggtca gggcgcctcc cgatccggcg aagttgtggc
      121 acatggcgca gttcacccgg aagagctcgc cgccgagggc gacgtcgccg ttcttgcctg
      181 acgtgtactg ggcgtccgga atgctcgggc caggcgccag ggatgcgacg tacgccgcca
      241 gggccgagat gtcgtcctgg ttgaaccggg ccctgggctg acggggcgcc tgcacgtcgg
      301 gagcggccaa cggcatccgg ccggtgccca cctggaagtc gacggccgca gcacccacgc
      361 ccgcgaggct gggtccggcc gaggtgccct gggcctgcat gccatggcag gtggagcagt
      421 tggccaggaa cagcttcttg ccctgttcga cctggtccgc ggtggccgag gcggcagcgg
      481 cgggccgggg cgcgaaggcc gagtaggcca gtccggtcac gatcaggccc agcagcaaca
      541 gcagggcgat cgccgccgga tggcgtcgtc gggcggccag agcgttcacg gtgcggtcct
      601 gtcggttggc gcgggcaggg caggtgcggg acgtgagccc atcgggcggc tcacttgagc
      661 aggtagatcg tggcgaacag cgcgatccac acgacgtcga cgaagtgcca gtagtacgag
      721 gtcacgaccg cgccggcagc ctgcacgtgg ctgtagtgcc gggtcgtgaa ggtgcggccg
      781 atgatcagca ggaaggcgag cagaccgccg gtgacgtgca tggcgtggaa tccggtcgtg
      841 aggtagaaga ccgagccgta ggcgttggcc gacagggtga tcccctcgga ggtgagctcg
      901 gagtactcga ggacctgacc ggcgacgaag atcgagccga agatgtaggt cacgacgtac
      961 cactcgcgca tcccccagtc cgcgaccgag cggaacaggc cgcgcccccg cagcgagatg
     1021 aggggcaggt cgccgcggtg cggcttgccg tgctcggccg cgtggacgcc gagctggcac
     1081 cacaccgagg agatcacgag gaccagggtg ttgatcgcgg cgtaggggac gttgaggacg
     1141 cccgtctcct tggcccacag ctcgggctcc acggagcgga tcgtgaagta catcgcgaac
     1201 agacccgcga agaacatcag ctcgctggag agccacacga tggtgcccac cgacaccatg
     1261 ttgggacgcg agaccgggcc gtggcccggg atgctgccaa ccgcgcggga ggaacctgag
     1321 gtcactgcgg atgctgtcgc cacgtgcgcc attattgcca tattcgcgtc gcggcacacc
     1381 gtcgaccccc cgtctacgac gcggccttgc gggaaagcgg gtacgcggcc ctgttgtagg
     1441 gcccgcgcga gccccggtgc cggtcggtgc gggcgccctc ccgacgggcc ccggagcctg
     1501 cgtcgggcgg accggtagca tctgccgcat gaccgcatcg cacgcgcctg cccccgacgt
     1561 cgcgtcggct ggaagcgccg ctcgccagat ctcggtgctg ctctacagcg acgaccgcac
     1621 gacgcgcgac gcggtccggg tcaacgtggg tcgacgcccc gcgcgcgacg tcgaggtcgt
     1681 ctcgtggctc gagtgtgcga cggctcccgc agtgatcgag gcggtcgagg gcagctcctt
     1741 cgatgtgctc atcctggacg gg
//
LOCUS       DASYFY010000468         3440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_926074, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000468 DASYFY010000000
VERSION     DASYFY010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926074"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..2133
                     /locus_tag="VGN19_09405"
     CDS             46..2133
                     /locus_tag="VGN19_09405"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEV7196145.1"
                     /translation="MDTTTLPRNATASVPGTTAAPPDLIAPASAAQPPASRVQRLWRG
                     PQNDPSWARPALLGLLMATAVLYFCNLTSSGYANSFYSAAVQAGSASWKAFLYGSSDA
                     GNSITVDKPPASLWLMALSVRALGLSSFSILLPEVLMGVATVGVVYATVKRQFGAAAG
                     LLGALVMALTPVAVLMFRFNNPDALLVLLMALGAWATMKSIEQGSAKWFAIVGVFIGL
                     GFLTKALQVFLVVPAFGLAYVLFAETTLRRRITGALLGAGAMVLSAGWWVAIVQLVPA
                     SMRPYIGGSQDNSFLSVTFGYNGLGRISGNETGSVGGGNGWGTPGLLRMFSTSVGGQI
                     SWLLPAAGLLLVVGVLLRGRAPRTDLRRAAYVVWGGWLVVTMLTFSLMAGIFHEYYTV
                     ALAPAIAAVVGMGAKEAWEHRASRLGSITLAAAVAATSAWSFILLSRTDWQNWLRVVV
                     LVMGLASALLMLVITRLNRRWVPAVLATALVAVLAGPAAYSVQTVSTAHTGSIVTAGP
                     STGRGGVGGPGFAGGPRGGFAGGMPGTTAGGAQGAPTQGQPGPGGGVGGLLDASTPNT
                     EVTTTLSANASSYRWVAAAIGSQNAAGLQLGTGLPVMAIGGFNGSDPSPTLAQFETYV
                     ATGQIHYFAASGTGGRQGAGGPGGSSGTGTQISTWVAANFTQVTIGGSTFYDLTKPLA
                     GTSASSSTTTQNT"
     gene            2143..3411
                     /locus_tag="VGN19_09410"
     CDS             2143..3411
                     /locus_tag="VGN19_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
                     /protein_id="HEV7196146.1"
                     /translation="MGPLAAPVLDVVIPVHNEQHTVAACVRRLHAHLLATFPYPFRIT
                     VADNASSDATHLVASELAATLPEVEVVRLEQKGRGRALKQVWLASDAPILAYFDVDLS
                     TDLDALWPLLAPLMSGHSDLAIGSRLARGSRVVRGAKREVISRCYNLVLRVALGARFS
                     DAQCGFKAIRGDVAAELLPLVEDPTWFFDTELLVLAERSGLRIHEVPVDWFDDPDSRV
                     DVVATALDDLRGVWRLRRALASDRLPVAELAARIGRHGPGTGTCRQLRRFAAVGVLST
                     AVHLGLFAALTVPTGSRQTANLVGLLIATTVNTALNRRWTFGLRGTGRARHQLQGLLV
                     FAVTWLMTAGALDALHGTVANPSTAMATTVVAVATALTTVLRFVAMRTWMFRVPQSSL
                     MTNVPASSSNTTIPVQSKPSTEPLQTVTNP"
BASE COUNT          472 a         1229 c         1158 g          581 t
ORIGIN      
        1 gagggtcaca gggaccccac agtgccgggc tcgacggtgg tggacatgga cacgaccacc
       61 ctcccccgca acgcgacggc cagcgtgccc ggcacgaccg ctgccccgcc agacctcatc
      121 gcccccgcct ctgcggcaca gccgcccgcc agtcgggtac agcgactgtg gcgcggaccc
      181 cagaatgacc cgtcctgggc tcgcccggca ctactcggcc tgctcatggc cacggcagtg
      241 ctgtacttct gcaacctcac ctcgagcggc tacgccaact ccttctactc ggcggccgtc
      301 caggccggca gcgccagctg gaaggccttc ctctacggat cctccgacgc gggcaactcc
      361 atcaccgtcg acaagccacc cgcctcgctc tggctcatgg cgctgtcagt ccgggccctt
      421 gggctgagct cgttcagcat cctcctgccc gaggtgctca tgggcgtggc caccgtgggc
      481 gtcgtgtacg ccacggtcaa gcgtcagttc ggcgccgcag cgggtctgct cggcgccctg
      541 gtcatggcgc tcacccccgt ggccgtgctg atgttccgct tcaacaaccc cgacgccctc
      601 ctggtgctgc tgatggccct cggcgcctgg gcgacgatga agtccatcga gcaaggcagc
      661 gccaagtggt tcgccatcgt gggggtgttc atcggcctgg gcttcctcac caaggccctg
      721 caggtcttcc tcgtcgtccc cgcgttcggc ctggcctatg tgctgttcgc cgaaaccacg
      781 ctgcgccgac gcatcaccgg cgccctgctc ggagccggag ccatggttct cagcgccggg
      841 tggtgggtgg ccatcgtcca gctcgtcccg gccagcatgc ggccctatat cggtggctcc
      901 caggacaact cgttcttgtc ggtgaccttc ggatacaacg gcctggggcg catcagtggc
      961 aacgagacgg gctcggtcgg cggaggcaac gggtggggta cgcccgggct gttgcggatg
     1021 ttctcgacct ccgtcggtgg tcagatctcc tggctgctgc ccgcggcggg cctcctgctc
     1081 gtggtcgggg tcctgctgcg cggacgtgcg ccgcgcacgg acctgcgccg cgcggcatac
     1141 gtcgtctggg gcggttggct cgtcgtgacg atgctgacgt tctcgttgat ggccgggatc
     1201 ttccacgagt actacaccgt cgcgctggct cctgcgatcg ccgcggtcgt cggcatgggt
     1261 gccaaggagg cctgggagca ccgcgcctcg cgactcggct cgatcacgct cgctgctgcc
     1321 gtcgccgcga cgtcagcctg gtcgttcatc cttctctcgc gcaccgactg gcagaactgg
     1381 ttgcgagtcg tcgtcctcgt catgggcctg gccagcgcgc tgctgatgct ggtcatcacg
     1441 cggctgaacc gtcgctgggt gcccgcggtc ctggccacgg ccctggtcgc cgtgctggca
     1501 gggccggcgg cctacagcgt ccagaccgtc agcaccgctc ataccggctc catcgtgacc
     1561 gccggaccct cgacgggccg cggaggtgtc ggcggccccg gatttgccgg cggcccacgt
     1621 ggcggcttcg cgggaggtat gccgggtaca accgcgggag gcgcccaggg tgcacccacc
     1681 cagggacagc ccggtcccgg aggcggcgta ggtggactgc ttgacgcctc cacgcccaac
     1741 accgaggtca ccacgaccct gtccgccaat gccagctcct accggtgggt tgccgctgcc
     1801 atcggctcgc agaacgctgc cggactccag ctcggaacag gcttgcctgt catggcgatc
     1861 ggtggcttca acggcagcga cccgtcgccg acgctggccc agttcgagac ctatgtcgcc
     1921 actggacaga tccactactt cgcggccagc gggaccggcg gcaggcaggg tgcgggtgga
     1981 ccgggcggca gctcgggaac cggcacgcag atctcgacgt gggtggcagc gaacttcacc
     2041 caggtgacga tcggcgggtc gacgttctac gacctgacga agccactggc tggaacctcc
     2101 gcctcgtcct cgaccaccac acagaacacc tgagagacca ccatgggacc ccttgcagcc
     2161 ccggtcctgg acgtcgtgat ccccgtccac aacgagcagc acaccgtggc agcctgtgtc
     2221 cggcgactgc acgcgcatct cctggcgacg ttcccgtacc ccttccggat caccgtggcg
     2281 gacaacgcca gctccgatgc gacccacctg gtcgcgtcgg agctggcggc cacgctgccc
     2341 gaggtggagg tggtccgtct cgagcagaag gggcggggtc gggcgctcaa acaggtctgg
     2401 ctcgcctccg atgcgccgat cctggcgtac ttcgatgtcg acctgtcgac ggacctcgac
     2461 gcgctctggc cgttgttggc gcccttgatg tccgggcact ccgacctagc catcgggtcg
     2521 cgcctggcgc gtggctcgag ggtggttcgc ggcgccaaac gagaggtgat ctcgcgctgc
     2581 tacaacctcg tgttgcgcgt ggcgctgggc gcgaggttca gcgacgcgca atgcgggttc
     2641 aaggccattc gaggggacgt cgccgccgag ctgctcccgc tggtcgagga ccccacctgg
     2701 ttcttcgaca ccgagctgct ggtgctcgcc gagcgctcgg gcctgcgcat ccacgaggtg
     2761 cccgtcgact ggttcgacga cccggactcg cgggtggacg tggtggccac cgcgctggac
     2821 gacctgcgag gggtgtggcg gctgcggagg gcgctcgcct cggaccgcct tcccgtcgca
     2881 gagctggccg ccaggatcgg ccggcacggt cccggcaccg ggacgtgtcg acagctgcgc
     2941 cgattcgccg cggtgggcgt cctgagcacc gcggtccacc tcgggctgtt cgcggcgctc
     3001 acggtgccga cgggctcgcg acagaccgcg aacctggtcg gcctgctcat cgccacgacc
     3061 gtcaacacgg cgcttaaccg gcgttggacc ttcgggctgc gagggaccgg gcgcgccaga
     3121 caccagctgc aggggctgct cgtcttcgct gtgacgtggc tgatgacggc gggtgcgctg
     3181 gacgccctgc acgggaccgt ggccaacccc tcgaccgcca tggcgacgac agtggtggcg
     3241 gtggcgacgg cgctcacgac ggttcttcgg tttgttgcca tgcggacgtg gatgttccgc
     3301 gttcctcaga gctcgttgat gacgaacgtg cccgcgtcgt cctcgaacac gacgatccct
     3361 gtccagtcga agccgtcgac ggagcccttg cagaccgtca ccaacccctg acccacctgc
     3421 gagcgatccg ggcaggtgat
//
LOCUS       DASYFY010000469         2216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1295200, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000469 DASYFY010000000
VERSION     DASYFY010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1295200"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1109
                     /locus_tag="VGN19_09415"
     CDS             <1..1109
                     /locus_tag="VGN19_09415"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEV7196147.1"
                     /translation="AELAVTLSVLAESPDAAAAQVVPSSPVGDYTDPEAVLAFARGCD
                     VVTFDHEHVPDAVLSALVAAGIPVHPSPAALRFAQDKLAMRRRLTEIGIACPAWAQAS
                     TAQDVEEFADQVGWPMIAKTPRGGYDGKGVRLVDGVAELQDWLAQVGQDGPLADGILL
                     EEKVDFVRELAVLVARSPSDQAAAWPVVETVQTDGICTEVLAPAPDLDLHLAAVATEA
                     GLRIAENLAVTGVFAVEMFEVRDPETGEPAYVVNELAMRPHNSGHWSMDGAVTGQFEQ
                     HLRAVLDLPLGAPTPRARHTVMANVLGGDYPELYPAYRHLMARDPGLKLHLYGKAVRP
                     GRKIGHVNVSGSDLDTLRERARHAADYLAGVITE"
     gene            1106..1633
                     /gene="purE"
                     /locus_tag="VGN19_09420"
     CDS             1106..1633
                     /gene="purE"
                     /locus_tag="VGN19_09420"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEV7196148.1"
                     /translation="MSVQPLVGLVMGSDSDWPVMELAAQALEEFGVPFEADVVSAHRM
                     PQEMIAYGQSAAERGLRVVIAGAGGAAHLPGMLAAVTPLPVIGVPVPLKHLDGMDSLL
                     SIVQMPAGVPVATVSIGGARNAGLLAVRILGAGEGPDAADLREQMTAFQAALRDQARA
                     KGAALRQRPRPGVTS"
     gene            complement(1630..>2216)
                     /locus_tag="VGN19_09425"
     CDS             complement(1630..>2216)
                     /locus_tag="VGN19_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEV7196149.1"
                     /translation="LRGVDADEVHPPALRYKKSELHGGESTSPVALLALPRPLWCGRG
                     MAEHQNDPQLIRALLTDPARWAVVGLSSNQAREAYGVARWLQAELGMGLVAVHPKAES
                     AHGAPGYPTLSAIPDGTEVAVVDCFVSSEHVGAVVDEAIANQDRLQIRAVWLQLGVVD
                     EAAAARARAAGVQVVMDACPRIEWPTVAAAGTTR"
BASE COUNT          319 a          769 c          789 g          339 t
ORIGIN      
        1 ctgccgagct cgcggtcacc ctgagtgtgc tggccgagag ccctgacgcc gctgcggcgc
       61 aggtggtgcc gtcctccccg gtgggcgact acacggaccc cgaggcggtg ctggccttcg
      121 cccggggctg cgacgtggtg accttcgacc atgagcacgt ccccgacgcg gtgttgagcg
      181 ctttggtcgc cgctggcatc cccgtgcacc cgtccccggc ggcgctgcgc ttcgcccagg
      241 acaagctcgc catgcggcgt cggctcaccg agatcggcat cgcgtgcccc gcctgggcgc
      301 aggccagcac ggcgcaggac gtcgaggagt tcgcggacca ggtcggctgg ccgatgatcg
      361 ccaagacccc tcgtggtggc tacgacggca agggggttcg tctggtcgac ggggtggccg
      421 agcttcagga ctggctcgcc caggtgggtc aggacggccc gctggccgac ggaatcctgc
      481 tggaggagaa ggtcgacttc gtgcgagagc tggccgtcct cgtcgcgcgc agtccctccg
      541 accaggccgc ggcgtggccg gtcgtcgaga cggtgcagac agacggcatc tgcaccgagg
      601 tcctcgcgcc ggctcccgac ctggacctcc atctggcggc tgtcgcgacc gaagcaggct
      661 tgcgcatcgc cgagaacctt gccgtcacag gggttttcgc ggtcgagatg ttcgaggtcc
      721 gtgatcccga gacgggggaa ccggcctatg tggtgaacga gctcgccatg cgtccgcaca
      781 acagtgggca ctggtccatg gacggcgcgg tgaccggtca gttcgagcag caccttcgcg
      841 ccgtgctgga cctcccgctc ggggcgccca ccccccgcgc gcggcatacc gtgatggcga
      901 acgtgctggg tggcgactat cccgagctgt acccggcata ccggcatctc atggcacggg
      961 acccggggct gaagctgcac ctctacggca aggccgtccg gccgggccgc aagatcggcc
     1021 atgtcaatgt cagcggctcg gacctggaca cgctgcgtga gcgggcccgc cacgcagccg
     1081 actatctcgc gggagtgatc accgaatgag cgtgcaaccg ttggtcggcc tcgtcatggg
     1141 cagtgacagc gactggcccg tgatggagct cgcagcccag gcgctggagg agttcggcgt
     1201 cccgttcgag gctgacgtgg tctctgcgca tcggatgccg caggagatga tcgcctacgg
     1261 ccagagcgct gccgagcgag gtctccgggt cgtcatcgcc ggcgccggcg gggcagcgca
     1321 cctgcccggc atgctcgcgg ccgtcacccc gctccccgtg atcggggttc cggtgccgct
     1381 caagcacctc gacggcatgg actcgttgct ctccatcgtc cagatgcccg ccggggtccc
     1441 tgtggcaacg gtctcgatcg ggggtgccag gaacgccggg ctgctcgcgg tgcgcatctt
     1501 gggcgccgga gagggcccgg atgccgccga cctgcgcgag cagatgacgg ccttccaggc
     1561 cgccctgcgg gaccaggcgc gtgccaaagg ggccgcgttg cgccagcggc cacgaccagg
     1621 ggtgacgagc tagcgcgtcg tccctgcggc ggcgacggtc ggccactcga tgcgcgggca
     1681 ggcgtccatc acgacctgca cgccggccgc acgagctctg gctgcggcgg cctcgtcgac
     1741 cacaccgagc tgcaaccaga cggctcggat ctgaagccgg tcctggttgg cgatcgcttc
     1801 gtccacgacc gcgcccacgt gttcggagct gacgaaacag tcgaccacgg cgacctcggt
     1861 accgtcgggg atcgccgaga gggtcggata ccccggagcg ccgtgcgccg actctgcctt
     1921 ggggtgcact gcgaccagac ccatgcccag ctcggcctgg agccatcggg cgacgccgta
     1981 ggcctcgcga gcttggttgg acgacaagcc cacgaccgcc cagcgggcgg ggtcggtcag
     2041 cagtgcgcgg atgagctggg ggtcgttctg gtgctcggcc atgcctcgac cgcaccacag
     2101 cggtcgtggc aacgcaagca acgccaccgg tgacgtactc tcgcccccat gaagttcgga
     2161 ctttttgtac cgcagggctg gcggatggac ctcgtcggca tcgacccctc gcagca
//
LOCUS       DASYFY010000470         5117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_716776, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000470 DASYFY010000000
VERSION     DASYFY010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5117
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716776"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..943
                     /gene="hutU"
                     /locus_tag="VGN19_09430"
     CDS             <1..943
                     /gene="hutU"
                     /locus_tag="VGN19_09430"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013769254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HEV7196150.1"
                     /translation="CAWVLPELLRRGVQVDIVTDQTSAHDPLSYLPEGIDLDDWHDYA
                     EKKPEEFTDRARESMAKQVQAMVEFQDGGAEVFDYGNSIRDEARQGGYDRAFEFPGFV
                     PAYIRPLFCEGKGPFRWVALSGDPKDIATTDRAVLDLFPDNERLHKWIKGAQERIAFQ
                     GLPARICWLGQGERDKAGLAFNELVRTGQVSAPIVIGRDHLDTGSVASPYRETEAMLD
                     GSDAIADWPLLNALVNTSSGASWVSIHHGGGVGIGRSLHAGQVSLADGTELAAQKLAR
                     VLTNDPAMGVIRHVDAGYDIAERTAQQHGVRIPMRED"
     gene            complement(958..1446)
                     /locus_tag="VGN19_09435"
     CDS             complement(958..1446)
                     /locus_tag="VGN19_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010533176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEV7196151.1"
                     /translation="MDELTSEHRAAAALEASGIQHTITRHGRVGSLEEAAAARGVAPA
                     DIVKTLVVRRGDDDFLFVLVPGDREISWPKLRAHLGVNRVSMPDAETAKDVTGYERGT
                     ITPFGSSTAWPVVADATVTGRLVSLGAGGHGVAVTAHADDVIRVFDAVVADVTDGIEP
                     AG"
     gene            1594..2802
                     /locus_tag="VGN19_09440"
     CDS             1594..2802
                     /locus_tag="VGN19_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016813 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear
                     amidines [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoate amidohydrolase"
                     /protein_id="HEV7196152.1"
                     /translation="MSFESMWADLQPLGRNADTGGYRRFAWTREDHDLREWFAGQCSD
                     RGLDLTEDRMGNQWAWWGDPDEAVRRGDKGVVTGSHLDSVPDGGAFDGPLGVVSALAA
                     IDALRAGGFAPARPVGVVNFVDEEGARFGVACAGSRVITGAMTARRARSLTDADGVSM
                     AEALEAAGRDPHQIGRDDETVGRIGAFVELHVEQGRGLIDLDHPIAVASDIWSHGRWR
                     LEFTGVANHAGTTRLEDRQDAMLGYAGAVLAAREAAITHGCVATIGKVAVVPGGVNAI
                     PSAVTGWLDARGASPRAVRRAVADIGAMVEQSGGHIVEESWTPSTAFDADLGGRLSGA
                     LGGIPVLGTGAGHDAGILANAGVSTAMLFVRNPTGVSHSPAEFAELDDCLEGVRALTT
                     VLRELAGAKR"
     gene            2799..4124
                     /locus_tag="VGN19_09445"
     CDS             2799..4124
                     /locus_tag="VGN19_09445"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HEV7196153.1"
                     /translation="MTWYWAEHAWLPSGLAHDVRFAVLDGSFTTVTARQRPQPGDEAL
                     RGVVLPGFANAHSHAFHRALRGRTHGGGGNFWTWREQMYAVTRQLDPDRYFALARAVY
                     AEMALAGITVVGEFHYVHHDCHGRPYAEANAMGHAVVEAAREAGVRLTLLDTCYLTGG
                     LTGDGHLPLDDVQRRFADRDVDAWASRVASLEPDATTRIGAAVHSVRAVPRDQLAPMA
                     QLTRGRVVHAHVSEQPGENLATQMFYGATPTALLAEAGFLGEDFTAVHATHLSEEDIA
                     LLGDSRTTACFCPTTERDLADGIGPARALTAAGARLSLGSDQQAVIDPFEEIRGLEMH
                     ERLVSNERGRFGPDELLHVATVDGYRSLGWPQGGRIAEGEVADFVVVRADTVNTAGAK
                     PGQILYCATRSDVDRVVVGGRVVVQDARHELGDVASLLGKALADVREHA"
     gene            4121..>5117
                     /locus_tag="VGN19_09450"
     CDS             4121..>5117
                     /locus_tag="VGN19_09450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEV7196154.1"
                     /translation="MTSTLVTNIGELVTCDDTTSDRLGIRRDAAVVIEDGYVAWLGPA
                     TQAPDADRKLDLGGRAMLPGFVDSHAHLAFAGDRGAEFAARMAGEAYDGGGIGVSVAA
                     TRAADDETLRGLLASRVAEMRAQGTTTVEIKSGYGLTVEDEARALRLAAELTDETTFL
                     GAHVVPAEYASDRAAYLELVTGPMLAAAAPHARWVDVFCEPASAHAFSGDEARMVLEA
                     GRAAGLGLRVHGNQLGHGPGVQLAVELGAASVDHCTYLSDADVTALADAADATVATLL
                     PGVEFSTRSPYPDAAALLRAGVSVALATDCNPGTCYSSSMPFVIALAVREMGLTPA"
BASE COUNT          711 a         1764 c         1864 g          778 t
ORIGIN      
        1 ctgcgcgtgg gtgctgccgg aactgctgcg gcgcggcgtg caggtggaca tcgtcaccga
       61 ccagacgtcg gcccacgacc cgctgtccta cctgcctgag gggatcgacc tcgacgactg
      121 gcacgactac gccgagaaga agcccgagga gttcaccgac cgggcgcggg agtcgatggc
      181 caagcaggtc caggccatgg tggagttcca ggatggcggg gcggaggtgt tcgactacgg
      241 caactccatt cgtgacgagg cgcggcaggg tggctatgac cgggccttcg agttccccgg
      301 cttcgttccc gcgtacatcc gtccactgtt ctgcgagggc aagggtccgt tccgttgggt
      361 ggcgctctcg ggtgacccca aggacatcgc gaccacggac cgcgcggtgc tcgacctgtt
      421 ccctgacaac gagcggctgc acaagtggat caagggcgcc caggagcgga tcgcgttcca
      481 ggggcttcct gctcgaatct gctggctggg ccagggcgag cgcgacaagg ccggtctggc
      541 gttcaacgag ctggtccgta ccgggcaggt gagcgctccc atcgtcatcg gccgcgacca
      601 tctcgacacc gggtcagtgg caagccctta ccgcgagacc gaggccatgc tcgacggctc
      661 ggacgccatc gccgactggc cgttgctcaa cgccctcgtc aacacctcat cgggcgcgag
      721 ctgggtgtcg atccaccacg gtggcggtgt cggcatcggc cgctcgctgc acgctgggca
      781 ggtgtcactg gccgacggaa ccgagctggc cgcgcagaag cttgcccggg tcctgaccaa
      841 cgacccggcg atgggcgtca tccggcacgt cgatgccggg tacgacattg ccgagcggac
      901 cgcgcagcag cacggcgtgc gaatccccat gcgggaggac tgagctcgca gcccgggtca
      961 gcccgctggc tcgatgccgt cggtgacatc tgcgacgacg gcatcgaaca cgcggatgac
     1021 gtcgtcggcg tgagctgtca ccgccactcc atggccaccc gcgcccaggg agaccagccg
     1081 gccggtcacg gtcgcgtcgg cgacgaccgg ccacgcggtg gaggacccga atggcgtgat
     1141 cgtcccgcgc tcgtagccgg tgacgtcctt ggcggtctcg gcgtcgggca tggagacgcg
     1201 gttgacgccg aggtgggccc gcagcttcgg ccagctgatc tcgcggtcgc ccggcaccag
     1261 cacgaagagg aagtcgtcgt ctccacgccg gacgaccagg gtcttgacga tgtcggccgg
     1321 ggcgacccca cgggcggcgg cggcctcctc gagcgacccg acccgaccat gtcgggtgat
     1381 cgtgtgctgg ataccgctcg cctccagggc ggcggcggcg cggtgttcgc tggtgagctc
     1441 gtccacgggg tcagcctagg ctggagccgc tttcggctcc tctgcttggg gcgggtctgt
     1501 gatctgagac ggaatgggcc ccgcatcgac ctgccgcgca gcctcggggt gtggaatggt
     1561 ctcgttgcac gaatcggcgc aagagagggc actgtgagct tcgagtcgat gtgggccgac
     1621 ctccagcccc tgggccgcaa tgccgacacc ggtggttacc gacgattcgc ctggacgcgc
     1681 gaggaccacg acctgcggga gtggtttgcc ggccagtgct cggatcgtgg cctcgacctc
     1741 accgaagacc ggatgggcaa ccagtgggcg tggtgggggg accctgacga ggcggtccgt
     1801 cgcggcgaca agggggtcgt caccggttcc cacctcgaca gcgtgccgga cgggggagcg
     1861 ttcgacggtc cgctcggcgt ggtcagcgcg ctggccgcca tcgatgccct gcgtgcgggt
     1921 ggtttcgccc cggcccggcc cgtgggcgtc gtcaacttcg tcgacgagga gggggcgcgg
     1981 ttcggggtgg cgtgcgccgg gtcgcgggtc atcaccggag cgatgaccgc tcgccgcgcc
     2041 cgcagcctga ccgacgcgga cggcgtctcg atggcagagg ccctcgaggc cgcaggtcgc
     2101 gacccccacc agatcgggcg ggacgacgag accgtggggc gcatcggagc gttcgtcgag
     2161 ctgcacgtcg agcagggccg ggggctcatc gacctcgacc accccatcgc cgtggcctcc
     2221 gacatctggt cccacgggcg gtggcggctg gagttcaccg gggtggccaa ccacgccggg
     2281 acgacccggt tggaggaccg gcaggacgcg atgctcgggt atgccggtgc cgtcctggcc
     2341 gcccgcgaag cggccatcac ccatggctgc gtcgccacca tcggcaaggt cgcggtggtt
     2401 cccggcgggg tcaacgccat ccccagcgcc gtgaccggct ggctcgacgc caggggagcc
     2461 agtccgcgag cggtccgtcg cgcggtggcc gacatcggcg cgatggtcga gcagtccggc
     2521 ggccacatcg tcgaggagtc ctggacgccg tccacggcgt tcgacgccga tctggggggg
     2581 cgcctgagtg gcgccttggg cggcatacca gttctgggca cgggcgccgg ccacgacgcg
     2641 gggatcctgg ccaacgcggg ggtgtcgacc gcgatgctgt tcgtgcgcaa cccgactggg
     2701 gtgtcccatt cgcccgccga gtttgccgag ctcgacgact gtctcgaggg cgtgcgagca
     2761 ctcacgaccg tcctgcgcga gctcgcgggt gccaagcgat gacctggtac tgggccgagc
     2821 atgcgtggct cccttcaggc ctggctcatg atgtgcggtt cgccgtgctc gacggcagct
     2881 tcaccactgt caccgcccgg cagcgacccc aacccggcga cgaagcgctg cggggcgtgg
     2941 tgttgcccgg gttcgccaac gcccacagcc atgccttcca tcgcgccctt cgtggtcgga
     3001 cccatggcgg aggtggcaac ttctggacct ggcgtgagca gatgtatgcc gtcacccgcc
     3061 agctcgaccc ggatcggtac ttcgcgctgg cccgtgctgt gtacgccgag atggccctgg
     3121 cgggtatcac cgtggtgggc gagttccact acgtccacca cgactgccac gggcgtccgt
     3181 acgccgaggc caatgccatg ggtcacgctg tggtcgaggc ggctcgtgag gccggcgtac
     3241 gcctgaccct gctcgacacg tgctacctca cgggtggtct gaccggcgac gggcatctgc
     3301 cgctggacga cgtccagcgg cggttcgccg accgggatgt cgacgcctgg gcctcgcggg
     3361 tggcctcgct cgaacccgat gccaccaccc gcatcggcgc ggctgtgcac tccgtccgcg
     3421 ccgttcctcg ggatcagctg gcgccgatgg cccagctcac tcgggggagg gtggtccatg
     3481 cccacgtcag cgagcagccc ggcgagaacc tggcgacgca gatgttctac ggagccaccc
     3541 ccactgcgct gttggccgag gcgggcttcc tcggggagga cttcactgcc gtccacgcca
     3601 cccatctgag tgaggaggac atcgctctgc tgggtgactc gcgcacgacg gcgtgcttct
     3661 gccccacgac ggagcgcgac cttgccgacg gcatcggccc ggcgcgcgcc ctcaccgccg
     3721 cgggcgcacg actatcgctc ggctcggacc agcaggcggt catcgacccc ttcgaggaga
     3781 tccgcggcct ggagatgcac gagcgcctgg tgagcaacga gcggggccgc ttcggtccgg
     3841 acgagctcct ccacgtcgcg acggtggacg ggtatcgcag cctgggctgg ccgcaggggg
     3901 ggcggatcgc cgagggagag gtggccgact tcgtcgtcgt ccgcgccgac acggtcaaca
     3961 ctgcgggggc caagccgggc cagatcctct actgcgcaac ccgatccgat gtcgaccggg
     4021 tcgtcgtggg cggccgggtc gtggtgcagg atgctcggca cgagctgggt gacgtcgcct
     4081 ccctgctggg caaggcgctc gccgacgttc gggagcacgc gtgaccagca cgctggtgac
     4141 gaacatcggt gagctggtca cctgcgacga caccacgtcc gaccgcctcg gcatccgccg
     4201 cgacgccgcg gtggtcatcg aggacggcta cgtggcgtgg ctcggcccgg ccacgcaggc
     4261 tccggacgcc gaccggaagc tcgacctggg tggtcgcgcc atgctgcccg gcttcgtcga
     4321 ctcgcacgcc cacctggcgt tcgccgggga ccgaggtgcg gagttcgcgg cccggatggc
     4381 gggcgaggcg tatgacggcg gcgggatcgg ggtctccgtc gcggccaccc gagccgccga
     4441 cgacgagacc ttgcgggggc tgctggcctc ccgggtcgcc gaaatgcgcg cccaagggac
     4501 cacgaccgtc gagatcaaga gtgggtacgg gctgaccgtc gaggacgagg ctcgggcact
     4561 gcggctcgct gccgagctga cggacgagac caccttcctc ggggcccacg tcgtgccggc
     4621 cgagtacgcg agcgaccggg cggcatacct cgagctggtc accggaccca tgttggcggc
     4681 ggcggcgccg cacgcccgct gggtcgatgt gttctgtgag ccggcttccg cgcacgcctt
     4741 ctccggcgac gaggcgcgca tggttctcga agcgggccgc gcggccggac ttggactgcg
     4801 cgtgcacggc aaccagctcg gtcatggccc gggggtgcag ctcgccgtgg agctcggcgc
     4861 cgccagcgtg gaccactgca cctacctgtc ggatgccgac gtgacggccc tcgccgacgc
     4921 cgccgacgcc actgtggcca ccctgctgcc gggggtggag ttctccaccc gctcgcccta
     4981 tccggacgct gctgcgctgc tgcgggccgg cgtctcggtc gcgctggcga ccgactgcaa
     5041 cccgggcacg tgctactcct cctcgatgcc gttcgtgatc gctttggccg tccgcgagat
     5101 gggtctgacg ccggctc
//
LOCUS       DASYFY010000471         5437 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1714766, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000471 DASYFY010000000
VERSION     DASYFY010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5437
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1714766"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..356)
                     /locus_tag="VGN19_09455"
     CDS             complement(153..356)
                     /locus_tag="VGN19_09455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196155.1"
                     /translation="MTSIAPGGDHDTRLVGDEYVDRLDSSARVCREETAAMTADEADC
                     LLVALEEPKQSTRTRVVRCAREP"
     gene            complement(353..1585)
                     /locus_tag="VGN19_09460"
     CDS             complement(353..1585)
                     /locus_tag="VGN19_09460"
                     /inference="COORDINATES: protein motif:HMM:NF018434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HEV7196156.1"
                     /translation="MKVLVYTAPARGHLFPTVPILLELQRRGHEVAVRTIGAEVAGLR
                     ALGFKADPVDPAIDAVELADFKEHNPLASLKAGVANFVARGELQLPDGQNAIEEEQPD
                     LLLVDVLCWGAAAVAEASGLPWASIQHSPTPLPAPEVPPFGPGLRPMTGPLGRLRNRL
                     LTPLTLGMLERVALPGTNALRARAGATPLRDAVDMFTRPPLTLYLTSRALEYPRTQWP
                     ESFLFTGPLSWDPAREAPDWLDELTRPVALVTTSSEFQDDGVLVRSALDGLAGEDLDV
                     VATMPAGLEDYDVPGNAHLAEFVPHLLLLPKAVVAVTHGGFGGTQKALAAGVPVVVVP
                     FGRDQAEVARRAEASGAGVMLSPKRLSPDRLRAAARQAITLKPAAVALAAKMAAEGGA
                     PLAADRLEALHSRSTAVG"
     gene            complement(1582..2160)
                     /locus_tag="VGN19_09465"
     CDS             complement(1582..2160)
                     /locus_tag="VGN19_09465"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196157.1"
                     /translation="MKRRYTMSARADAVQQTGERILAAAFDRFKVALFDEVTLDQIAA
                     DAEVTVQTVIRRFGSKEGIVEALTQIREAEVDAQRGAALVGDVGGAIANLVAHYEAEG
                     DLMMHLLRQENRVPAFAEVAARGRRIHALWCARVFAPWMDARSGVARQRLGAQLVAIC
                     DLYTWHLLRRQQGLSQRQTKLALLELVEGTLS"
     gene            2635..3021
                     /locus_tag="VGN19_09470"
     CDS             2635..3021
                     /locus_tag="VGN19_09470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196158.1"
                     /translation="MPTSTPLRRSMYGLGAAAVLTLTLAGTASAEPGPPVFNTWKAGA
                     ALTVGVPTAPAPRPHNPGPPSYNSTWPGWSSPSTANGRVGATGGPSGTLQYLQIGLGA
                     LGGAALASAGVLTIATRTRRGRLAHA"
     gene            3154..3693
                     /locus_tag="VGN19_09475"
     CDS             3154..3693
                     /locus_tag="VGN19_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigE family RNA polymerase sigma factor"
                     /protein_id="HEV7196159.1"
                     /translation="MSRPAPAAAVDRAPTFENYVNARGSALLKTAWLLTGDHQRAEDL
                     VQTALSKTWPRWDQIRDSADGAYDAYVRRVMLTTYIAWWRRRWTGESPTAQLPDQPLR
                     GDGEEAAVQRRDLMRALATLPRGQRAVLVLRYFEDLTEAQTADALGCSVGTVKSQSAR
                     GLAAMRISPSLTVKGAHHV"
     gene            3686..4702
                     /locus_tag="VGN19_09480"
     CDS             3686..4702
                     /locus_tag="VGN19_09480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196160.1"
                     /translation="MSEVETWLREQLQSAVPESMDFSGLLAGVHEQTGRTRRVRTAVV
                     ACAAVAALAVVGATVSDLAHPRALTPARPIGHLACAQQADALPATLPLAPGPLSQHLR
                     EVLVCPDRSAASVWQGSLPMDNQVSTPGDLDYLKLDVPAGQRCPAMPGGPAYRFLLLD
                     QAGQVSVVDNRRLACNGWPALNRYFIAQGDQLTAEFAASMPDPFPKCPSVLHSQLRAT
                     SGAPAALRKGTVVTTAVLCSNVLADDLATPVKGAQTGGRMVFSAEQLTRLTRDLARRG
                     STKGLMACHYDPQGVTVIHAVTATGTTFTLTSWCTNSAVLYVNGAKDDTITLLPATMR
                     DLTE"
     gene            5258..>5437
                     /locus_tag="VGN19_09485"
     CDS             5258..>5437
                     /locus_tag="VGN19_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020016372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196161.1"
                     /translation="MHARTTTIQADRSKVEDGIARVQDQVFPAVTAMDGCAGMSLLVD
                     RESGRCIATTSWESEA"
BASE COUNT          869 a         1936 c         1821 g          811 t
ORIGIN      
        1 gaggcggtgc tggtcatggg tggcccttct gaagcatgcg gatcgttgcc gacatcgaca
       61 acgccccgac cgaccgccgg tatgccgtga gcctcctcac gccagaccca gacgatgccg
      121 ggcgggggac gaatcggggc taggggaccc tctcaaggct ccctcgcaca ccgaacgacc
      181 cgcgtcctcg tgctctgttt gggttcctcg agggcaacca aaaggcaatc cgcctcgtca
      241 gcggtcatgg cggcagtctc ctcgcggcat acccgggcgg acgagtcgag acggtcgacg
      301 tactcgtcgc cgacgagccg ggtgtcgtgg tcaccgcccg gtgcgatcga ggtcatccaa
      361 cagcggttga tcgagagtgg agcgcctcca ggcgatcggc ggccaatggc gcaccgccct
      421 ccgccgccat cttcgcggcc agcgcgacag cggctggttt gagcgtgatc gcctgccggg
      481 cggccgcgcg cagccggtcc ggcgagagcc tcttggggga gagcatgacg ccggcaccgc
      541 tggcctccgc ccggcgagcc acctcggcct gatcccgacc gaagggcacg accacgaccg
      601 gcactccggc ggcaagggcc ttctgggtgc ccccgaagcc gccgtgggtg actgcgacga
      661 ctgccttcgg caggagcagc aagtggggca cgaactcggc gaggtgggcg ttgcccggca
      721 cgtcgtaatc ctcgagacca gcgggcatcg tggcgaccac atcgaggtct tccccggcca
      781 gtccgtcgag cgcgctgcgg accagcacac cgtcgtcctg gaactctgag gaggtggtga
      841 ccagcgcgac aggccgggtc agctcgtcca gccagtccgg cgcctcgcgg gccgggtccc
      901 agctcagcgg gccggtgaac aggaacgact ccggccactg ggtgcgcggg tattccagcg
      961 cccgggacgt gaggtagagc gtcagcggcg ggcgggtgaa catgtccacc gcatccctca
     1021 ggggcgttgc cccggccctc gcccggagcg cgttcgtgcc gggcagggcg actcgctcga
     1081 gcatgcccag cgtgagaggc gtcagcagcc ggttgcgaag cctgcccagg ggacctgtca
     1141 taggcctcag accgggcccg aacggaggca cctcgggggc gggtaggggg gtcggcgagt
     1201 gctggatcga cgcccaaggg aggccggatg cctcggcgac ggcggccgcg ccccagcaga
     1261 gcacgtccac aagcagcaag tcgggctgct cctcctcgat cgcgttctgg ccgtcgggca
     1321 gctgtagttc gccacgggcc acgaagttgg cgacaccagc cttgagcgac gccaacgggt
     1381 tgtgctcctt gaagtccgcc aactccacgg cgtcgattgc cgggtcgacg gggtcggcct
     1441 tgaagcccag tgcgcgcaaa ccggccacct cggctccgat cgttcggact gccacctcat
     1501 gtccgcgcct ctgcagctca agcaggatcg gcacggttgg aaacaggtgg ccacgggcgg
     1561 gggcggtgta gacgaggacc ttcacgagag cgttccttcc acgagctcga gcagtgccag
     1621 cttcgtttgg cgctgggaca ggccctgctg acgacgcagc agatgccagg tatagaggtc
     1681 gcagatcgcg accagctgtg cgcccagtcg ttgtcgggcg acccctgagc gagcgtccat
     1741 ccagggcgca aacacgcggg cgcaccacag ggcatggatc cgccggccac gcgcagcaac
     1801 ctcggcgaag gcaggtaccc ggttctcctg gcgcagcagg tgcatcatca ggtcaccctc
     1861 ggcctcgtag tgcgcgacca ggttcgcaat ggcacccccc acgtcgccca ccagtgcagc
     1921 tccgcgctgg gcgtccacct cggcttcccg gatctgggtc agcgcctcga cgatcccctc
     1981 cttggagccg aaacggcgga tcaccgtctg cacggtgacc tcggcgtccg cggcgatctg
     2041 gtcgagggtg acctcatcga acaacgccac cttgaagcgg tcgaaggccg ccgccaggat
     2101 gcgctctccc gtctgctgga ccgcgtcggc acgggccgac atcgtgtacc gccgtttcat
     2161 gttagtgaca ctagcgccaa attcgatgga ggtctatgcc gcgcagttga cgccttgttc
     2221 gtgcggacca cggtcaaagg cgcgcaggcg gcgatccgag cctgctgtct tctcgccgtc
     2281 agtttggtcg gcctcaacgg cggccaaggg ctctgcgccg acgagcccgg tgccgaccca
     2341 ggtccaagcc gatgatcggg gtgatcgggt cggccgacca gcaattcgcc tcttgcgaat
     2401 ggcttcgctt gattgcgaat agcggcgcga gtcggtgatc aacggcaacg gagtcacgat
     2461 gagtgacaac cttttcggtt gcccaacccc tccttccatg tgtaagccga tgcggccgca
     2521 gagcaaaccg cgaccgagcc gccgagacgc cgggcaagtc acgccaggga cgggctaccc
     2581 cgccggccag attgcacatc cgtgcgcatt tgagcacatg aaaggaatat cgccatgccc
     2641 acttccaccc cgttgcgccg cagcatgtac ggcctcggcg ccgccgccgt tctcaccctt
     2701 accctggccg ggaccgcttc ggccgaacct ggcccacccg tgttcaacac gtggaaggcc
     2761 ggggccgccc tcacggtggg cgtcccgacc gctccggccc cccggccgca caaccccggg
     2821 ccgccgtcgt acaacagcac gtggccggga tggagctcgc cctccaccgc caacgggcgg
     2881 gtcggggcga cagggggccc aagcggcaca ctgcagtacc tccagatcgg tctgggggcc
     2941 ctcggcggcg cggccttggc ttcagctgga gtgctgacca tcgcgacgcg cacccgccgg
     3001 ggccggctcg cccacgcgtg agaggagccg acgcggcccg gctggctcgg gccgcgccgg
     3061 actgcctcac ggggacgacc cgctttctcc cgaccggtga caacctttca aggtggccac
     3121 ccgctcctaa ccattgacgg ggaggtgacg ccgttgagca gaccagcacc ggcggctgcc
     3181 gtcgaccgcg cgccgacgtt tgagaactac gtgaacgccc gcggctctgc cctactcaag
     3241 accgcgtggc tgctcaccgg tgaccaccaa cgcgccgagg acctggttca gacggcgctg
     3301 agcaagacct ggccccgctg ggaccagatc cgcgactcgg ccgacggcgc atacgacgcc
     3361 tacgtccgca gggtcatgct caccacctac atcgcctggt ggcgccgccg ctggaccggt
     3421 gagtccccca ccgcgcagct gccggaccag ccgctgcgtg gggacggcga ggaggccgca
     3481 gtgcaacggc gcgacctgat gagggccctc gcgacgctac cgcgcggcca gcgggccgtt
     3541 ctggtcttgc gctacttcga agacctcact gaggcccaga ccgctgatgc gctcggctgc
     3601 agcgtcggga ccgtcaaaag ccagtccgcg cgggggctcg cggcgatgcg gataagtccg
     3661 tcactgaccg tgaaaggtgc ccaccatgtc tgaggtcgag acctggctgc gcgaacagct
     3721 ccagtccgcg gtccccgagt cgatggactt ctccggtttg ctcgcgggag tccacgagca
     3781 aaccggtcgc acgcggcgcg tgcgcaccgc cgtggtcgct tgcgcggccg tcgccgcgct
     3841 cgcggtcgtc ggcgcgactg tctccgacct ggcgcaccct cgggccttga ccccggcccg
     3901 gccgataggc cacctggcct gcgcccaaca ggcggacgca ctgccggcga ccctgccctt
     3961 ggcgcccggt ccgttgagcc aacacctccg cgaggtgctt gtctgccccg acaggtcagc
     4021 tgcctcggtc tggcagggga gcctccccat ggacaaccag gtgtccacgc ccggtgatct
     4081 ggactacctg aaactggacg tgccggcggg tcagcggtgc ccggccatgc caggcgggcc
     4141 ggcctaccgc ttcctcttgc tggaccaggc cggccaggtc agcgtcgtgg acaaccggcg
     4201 gctcgcctgc aacggctggc cagcgctgaa ccgctacttc atcgcccaag gggaccagct
     4261 gacggccgag ttcgccgcct ccatgcccga ccccttcccc aagtgcccgt ccgtgctcca
     4321 cagccagctc cgagccactt ccggcgcgcc ggcggcactg cgcaagggca cggtggtcac
     4381 gaccgcggtc ctctgctcga acgtactcgc cgacgacctc gcgacccccg tcaagggcgc
     4441 gcagaccggt ggccgcatgg tcttcagcgc cgaacagctc acccggctca cgagagacct
     4501 cgcccgtcgc gggtcgacca aaggcctgat ggcctgccac tacgaccctc aaggggtgac
     4561 tgtcatacat gcggttaccg ccaccggcac cacgttcacg ctcaccagtt ggtgtacaaa
     4621 ctcggcggtg ctctatgtca acggtgcgaa ggacgacacg atcacgctgc tcccagccac
     4681 catgcgggac ctcaccgagt agggcgcggt cgggtcggtt gcggcgttcg accctgacga
     4741 agagaggaac ccccgcagac cgtgcagatc tattggcgcc actggctcgc cgctgagcag
     4801 gtcgccagga gcccaagcgc ctggctcgca gcgctgcacg ccactgtcca cgtggatctc
     4861 gttaaagccg gctagaagcc gagggcgcgc cgagctgcgg tcctgaccta tccggatgtg
     4921 tcacgatccg ctcgtcctgc gcacgggcga gggctcagtg caaccgcaac cgctgggtca
     4981 ggactgcggt agcaggcaat ctcgccccct ggttccgtgc acttctgtcg cggcggaggt
     5041 cgcggtttcg ggtcccgtcg tagcggcccg aaatcgccgc accacggggt ggccagttcc
     5101 gttgtctgcc aggccagagt gatgcggcgg ccctggcccc ggcggaaatc gcggtgagga
     5161 tgccctgatt gcctcttgca cgacccgagc cagaggagaa aggttgagcg gtgacggcag
     5221 cgccgtccgg gcgctgcccc gatcaaggga gcacgtcgtg cacgcacgca ccacaacgat
     5281 ccaggcggac cgctccaagg tcgaggacgg gatcgcccgc gtccaggacc aggtcttccc
     5341 cgccgtcacg gctatggacg gctgtgccgg aatgtcgctg ctcgtcgacc gcgagtcggg
     5401 tcgctgcatc gccacgacct cgtgggagtc ggaggcc
//
LOCUS       DASYFY010000472         1524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1663408, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000472 DASYFY010000000
VERSION     DASYFY010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1663408"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1441)
                     /locus_tag="VGN19_09490"
     CDS             complement(<1..1441)
                     /locus_tag="VGN19_09490"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196162.1"
                     /translation="MTEVPNDTSTEAAPLDSMIDTFRTTRDALERSILPYATSVDGHT
                     FQFQSSLHGLALQTGGYVVLDDGDTSRLGQVLSLEAATERTSFHDVPGLSSDMVIRLA
                     QGEGIILDRDRRPFHQAKARPATSEETGAWFAAQRPNRAVLTVGELLLAPGVEATLDA
                     GGFNRHTFMCGQSGSGKTYSLGLVLEQLLLHTGLRLVILDPNSDYVRLGEARSGPDGS
                     PNADYARVGEGVQVWGQETDHPLRLMVNDLDPAAQAAVLGLDPLADREEYSALSNLVT
                     SGEAGQPMIGGLDDLLDAEQPGARGLGLRASNLGVLDWSVWSRGQGRSITEALLDDSI
                     RAMVIDLGSLDTVAEQRLIAEATLSTLWRNRHRRQPVLIVIDEAHNVCPREPADAVTR
                     LAADTAALIAAEGRKFGLYLLASTQRPQKVNEEVLTQCDNLLLMRMNSESDLAYLREV
                     FSFVPGGLVYRATSFLQGQSLAAGKFFVNP"
BASE COUNT          230 a          519 c          542 g          233 t
ORIGIN      
        1 ccgggttcac gaagaacttt cccgccgcaa ggctctgtcc ctgcaggaag ctcgtggccc
       61 gatagacgag gccgcccggg acgaacgaga agacctcgcg caggtacgcc aggtcggact
      121 ccgagttcat ccgcatgagc agcaggttgt cgcactgggt gaggacctct tcgttcacct
      181 tctgcggccg ctgggtcgac gccagcagat agaggccgaa cttgcgcccc tcagccgcga
      241 tgagggcggc ggtgtcggcg gcgagccgcg tcacggcatc cgcgggttcg cgcgggcaga
      301 cgttgtgcgc ctcgtcgatc acgatcagga ccggttggcg ccggtgccgg ttgcgccaga
      361 gcgtggagag ggtggcctcg gcgatcagcc gctgctcggc caccgtgtcg agggacccga
      421 ggtcgatgac catcgcgcgg atggagtcgt ccagcagggc ctcggtgatc gaccgtccct
      481 gtccgcggct ccagaccgac cagtcgagca cgcccaggtt ggacgcccgg agccccagcc
      541 cccgagctcc gggttgttcg gcatcgagca ggtcgtccag gccaccgatc atcggctgac
      601 ccgcttcgcc actggtgacg aggttcgaca gggccgagta ctcctcacgg tcggcgaggg
      661 ggtccaggcc gagaaccgcc gcctgagcgg ccgggtcgag gtcgttgacc atgagccgca
      721 aggggtggtc ggtctcctga ccccacacct gcaccccctc cccgacccgg gcgtagtcgg
      781 cattcggcga gccgtcaggc ccggaacggg cctcgccgag gcgcacatag tcggagttgg
      841 ggtcgaggat caccagtcga agcccggtgt gcagcagcag ctgctcgagg accaggccga
      901 gcgagtacgt cttgcccgag cccgactgcc cgcacatgaa cgtatgccgg ttgaagccgc
      961 ccgcgtcgag ggtcgcctcc acgccgggcg cgaggagcag ctctccgacg gtgagcaccg
     1021 cccggttcgg gcgctgggcc gcgaaccagg cgcccgtctc ctccgacgtc gccggacgcg
     1081 ccttcgcctg gtggaacggc ctgcggtccc ggtcgaggat gatgccctcg ccctgggcga
     1141 gccggatcac catgtcggac gacaggccgg gcacgtcgtg gaaggaggtg cgctcggtcg
     1201 ccgcctccag gctcagtacc tggcccagcc gcgaggtgtc accgtcgtcg aggacgacat
     1261 agccaccggt ctggagggcg agcccgtgca gtgacgactg gaactggaag gtgtgcccgt
     1321 cgaccgacgt ggcatacggc aggatgctcc gttccagggc atcccgggtg gttcggaagg
     1381 tgtcgatcat gctgtccagc ggggcagcct cggtcgacgt gtcgttgggg acctcggtca
     1441 tggcagtcac ctctcgcggt ttccctgcat cgtgcccccg gccgaccggt gctggcatca
     1501 cacgccccgg gtgagccacg gcgt
//
LOCUS       DASYFY010000473         2274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_979893, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000473 DASYFY010000000
VERSION     DASYFY010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_979893"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1203)
                     /locus_tag="VGN19_09495"
     CDS             complement(<1..1203)
                     /locus_tag="VGN19_09495"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HEV7196163.1"
                     /translation="MSRPGAGAPDTVHAAARPAAAGMPPARAARHTHRARRAGLTDRY
                     AALSPVQQRVIIAAGFLLLYFVLVTTSVILAPSGSRVAAWWPGAGVSVAALLWARGRT
                     RWVMGAALFVVSLAGNVLGGRPLDVSTGFALANTAESVTVTVLVLLAGGAEAVLASMA
                     GLFHLLRACAAGAIVIAAGAGLTVWRFEGGSGWETARAVAASHAAALLVVLPCVLVAA
                     STSSPPRRTSERAAQWFAVLGVPAAVFAPGQSLPLAFLPFIPLMWGAVRMGQRTVHLQ
                     ILATGVISSLLTATGGGPFGHLAGSRDPELVTALVQTFLACSALMVLPLSVAIRQRQE
                     TMAELTRSEALFRHGFNEALVGMLLLHREGDELRIVEINPVALRLLTSGDGRDETDLL
                     GLDWARLVS"
     gene            complement(1200..1580)
                     /locus_tag="VGN19_09500"
     CDS             complement(1200..1580)
                     /locus_tag="VGN19_09500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196164.1"
                     /translation="MSIALVVDDDLDIRQLVTLVAQRAGCEVIEASSGAEALAAALRV
                     VPDIVILDVAMPGISGLDVCAQLRRNLTTRDVPVLMLSAAARPSEQAAGLASGADLYL
                     TKPFSPAALAEQITRLMAQHARAS"
     gene            1810..>2274
                     /locus_tag="VGN19_09505"
     CDS             1810..>2274
                     /locus_tag="VGN19_09505"
                     /inference="COORDINATES: protein motif:HMM:NF016032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HEV7196165.1"
                     /translation="MRTVGVEEELLIVEPATGEALALASLLLDAVPPAPGAAVGGRMQ
                     HELQEQQIEIDSRPHLTLSGLAKDLREWRLAADASARRAGARVAALGTSPLEVVPTTV
                     PTPRYRRMADRYALLEHEQLTCGCHVHVSVESDEEAVAVIDRIRVWLPVLLAL"
BASE COUNT          351 a          797 c          843 g          283 t
ORIGIN      
        1 cgacaccagc cgtgcccagt cgaggccgag taggtcggtc tcgtcgcgac cgtcaccact
       61 ggtgagaagt ctgagggcga ccgggttgat ctcgacgatg cgcagctcgt cgccctcccg
      121 gtgcagcagc agcatgccca cgagagcctc gttgaaacca tgccggaaca acgcctcgct
      181 gcgtgtcagc tcggccatgg tctcctgacg ctggcggatc gccaccgaga ggggcaggac
      241 catcagggcg ctgcaggcca ggaacgtctg caccagggcc gtgacgagct caggatcgcg
      301 cgagcccgcc aggtgcccga agggtccacc tccggtcgcg gtgagcaacg agctgatcac
      361 tcccgtcgcc aggatctgga ggtggaccgt gcgctggccc atgcgcacgg ccccccacat
      421 caggggtatg aaggggagga aggccagcgg caggctctgc cccggcgcga agaccgcggc
      481 cgggacgccg aggaccgcga accactgggc cgcccgttcg ctggtccgcc gcgggggcga
      541 cgacgtcgag gcagcgacga ggacacacgg aaggaccacg agcagggcgg ccgcgtgcga
      601 ggccgcgacg gcacgggctg tctcccagcc cgagcccccc tcgaagcgcc acaccgtcaa
      661 gcctgccccc gccgcgatga cgatcgcccc tgccgcgcag gcccgcagga ggtggaacag
      721 cccagccatg gaggccagga cggcctcggc gccgcccgcg aggagcacca gcaccgtcac
      781 ggtgaccgac tcggccgtgt tggccagtgc gaaaccggtc gagacgtcca gggggcggcc
      841 gcccagcacg ttgccggcga gcgacacgac gaacagtgca gcgcccatca cccagcgcgt
      901 ccggcctcgc gcccacagca gagcggccac ggacaccccg gcgcccggcc accaggccgc
      961 cacccgggac cccgacggcg cgaggatgac ggaggtcgtg accaggacga agtagagcag
     1021 gaggaacccg gccgcgatga tcacgcgctg ttgcactgga gacagagcgg cataccggtc
     1081 ggtcaggccc gccctgcgcg cccggtgagt atgccgggcc gcccgagcgg gcggcattcc
     1141 agcggccgcg ggccgcgccg cggcgtgcac ggtgtcgggg gcaccggcac ccggccggct
     1201 cacgacgccc tggcgtgctg cgccatcagc cgcgtgatct gctcggcgag ggcggcagga
     1261 ctgaacggtt tcgtgaggta gaggtctgcg ccactggcga ggcccgccgc ctgctcgctg
     1321 gggcgcgcgg cggcactcag catgaggacg gggacgtcgc gggtggtgag gttccgccgc
     1381 agctgcgcac acacgtccag tccggagatc cctggcatgg cgacatcgag gatgacgatg
     1441 tcagggacga cccgcagcgc ggcggcgagc gcctcggcac cactcgatgc ctcgatgacc
     1501 tcgcacccgg ctcgctgagc gaccagggtg acgagctggc ggatgtcgag gtcgtcgtcg
     1561 acgaccagtg cgatggacat ccctgcctcc tcgagttcag aacggggttg cgaggactca
     1621 cgacgggctc ccagcagtct gggggagtgc tggggtcgct cgtcgtcgtt tggcgtcctc
     1681 gccccgcagg ggggccttga agtgcccgaa cggatgaggt tcccggggcc gctagggcta
     1741 ggcgcgacgg tccccggcgt catcgacgcg agcggtgccc actcgacccg gcgcgggtag
     1801 ggtcgatccg tgcgaaccgt gggggtggag gaggagctcc tcatcgtcga gcccgccacc
     1861 ggcgaggccc tggctctcgc gtcgctgttg ctcgacgcgg tgccgccggc tccgggggcg
     1921 gcggtcgggg ggcggatgca gcatgagctg caggaacagc agatcgagat cgactcccga
     1981 ccccacctca cgctgtccgg gctcgcgaag gacctgcgcg agtggcggct tgcagcggat
     2041 gccagcgcca ggcgcgccgg cgcccgggtg gcggctctgg gcacctctcc cctcgaggtg
     2101 gtgccgacga ccgtgcccac cccccgctac cggcggatgg cggaccgcta cgcgttgctg
     2161 gagcacgagc agctcacctg cggctgccat gtgcacgtgt cggtggagtc cgacgaggag
     2221 gccgtcgcgg tcatcgaccg gatccgggtc tggctgccgg tgctcctggc cttg
//
LOCUS       DASYFY010000474         7423 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_191282, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000474 DASYFY010000000
VERSION     DASYFY010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7423
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191282"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VGN19_09510"
     CDS             <1..375
                     /locus_tag="VGN19_09510"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7196166.1"
                     /translation="LVGAVSPQEVARHLADADLFLLPTRHENFCVSAAEALASGRPVV
                     IGSCGGQAEYVDERVGELVHEQTPAAYADAVQKVLVRLAEVPAEEFSNRVEERFSVDT
                     VRRGYHEVYALAVAEHDRRVAV"
     gene            372..1454
                     /locus_tag="VGN19_09515"
     CDS             372..1454
                     /locus_tag="VGN19_09515"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7196167.1"
                     /translation="MSATSGLVEVIVAVHQAERPVERAVRSVLLGAPKGTSVTVVCHG
                     IPSSVFEQRFADLTSSQLRLIEHADGIASPAGPFNAGLDAAQAKYVAVLGSDDLLAAG
                     ALPAWVARAERTGANAVLARVEHQAGGLVRTPPTRWGRRTSGLGLAKDRLAYRTAPLG
                     LLRRSLVDEQGLRFTPGLSTGEDLAFGLRLWAIGEGLHYAAADPAYIVGADAQVRVTM
                     SRRPISADLECCLRAVDAPWFATLAARDRTAVVIKLVRIHVFGAVYNRRDLASWTVQD
                     RQDLSLAASALLTAAPAASRALSLVERQLLTACLDEAAPESELAALSARRVRHGRWNT
                     VATADVRGLLSAQGPLRLMAASALMR"
     gene            complement(1404..2669)
                     /locus_tag="VGN19_09520"
     CDS             complement(1404..2669)
                     /locus_tag="VGN19_09520"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HEV7196168.1"
                     /translation="MRTATKGHDLMVNSDGRVGTLPTPLAWRLRGGRQGFVLASFAGL
                     VACALGVRWALGPFSSPDVRIYLAPWYLHLQQQGFSGFREAFADYNPPYLYLLYLASL
                     FHLPALVAVKAVSALGDVSLAFAVAAVVRQVRGGRLVPWAAGLGTMFVPTVFLNSAAW
                     GQTDAMYASILLWSLFYCLRDQHLLSWLIFGVAFAFKLQAVFLLPFLLLIWLLGGRQR
                     WWTPVVALVGPIVALVPAWLAGRPLGSLLHIYSTQAGSLHFLAYGPSLPGWFPRQDEA
                     IFARLFVVLTVAAMLAIFALVGARPAVLSDPSRRLSLAALVLMTVPFLLPHMRERYFF
                     PGEILVLVLAFARPRSAWLAVVTLTVSMLCYLEILLGVALPVSLAVLSLAILVVLIGL
                     ARESGLGLPATIDLAHEGRRSHEPERSLR"
     gene            2748..3956
                     /locus_tag="VGN19_09525"
     CDS             2748..3956
                     /locus_tag="VGN19_09525"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7196169.1"
                     /translation="MAIPIARFATRIFAPEIGAAAFRERLLADAFARAGYRVEVLTTV
                     PPASAPAADDEGISVSRWPVRRDANGNIRGYLHYLSYDLPLAVRLLSRRPPDVYVAEP
                     PPTTGLVVRLVAAVHRRPYIWYAADVWSEAAGAAGAPPWVVRVLRGVEAWVLRGAAVV
                     LSISDGVTEKLETFGVEEQRILTVGNGVDTTVFTPTGASMDQSAPYFVYTGTMSEWQG
                     AGVFIRALKRHHDAGGRDRIVFVGQGSELPALRQLAEELVPGAVEFTGVLSPADTAQW
                     IRGAVAALVSIKPGLGYDFAKPTKIYAATACGVPVVFAGKGAGPALVQSQDLGWACDY
                     DEAAVAATLNAALDASTASAEDVQLRRERLVAWTEGHASLRAIAATTCERIVAVLAQR
                     PGRGVSTGGG"
     gene            complement(3940..5001)
                     /gene="wecB"
                     /locus_tag="VGN19_09530"
     CDS             complement(3940..5001)
                     /gene="wecB"
                     /locus_tag="VGN19_09530"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEV7196170.1"
                     /translation="MKILSVVGARPQFVKLAPVAEALAATDADHVIVHTGQHYDAAMS
                     DVFFQDLGIPAPDLHLAVGSGSHGRQTGAMLAAMDEVLEQHQPDWVLVYGDTNSTVAG
                     ALSAVKMHIPLAHLEAGLRSFNRRMPEEHNRVLTDHAADLCLAPTEVAMGHLATEGLA
                     NRSILVGDVMTDVLYRVRDLVSNLVTEVPPELRGAAFRVATLHRPDNTDDEVRLRSII
                     DGLSQLDVPTLLLAHPRLRARAAEFGLDLASGSIVVAEPLPYPQLVRAVMDSTGVITD
                     SGGLQKEAFLLGTPCTTVRTETEWVETVELGWNVLVDDPRDLARVIDRAIPAETDATP
                     YGDGHAAKRVADALLTHRP"
     gene            5091..6059
                     /locus_tag="VGN19_09535"
     CDS             5091..6059
                     /locus_tag="VGN19_09535"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015489720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7196171.1"
                     /translation="MSLTSATPQRPSAGQTPKVVAVVVSYNRRHLLAECLTAVFAQTQ
                     PVDAVVVVDNASSDGSADLVAERFPSVDLVRLTQNTGGAGGFAVGMARAIDGHGAELL
                     WVMDDDTIATPSALAELCGAYRGYGPDLALVASRVTWTDGQDQDRNIPRPVPWVNARR
                     LRAAQSVGGRPMRTACFVSLLVAVDAVCAEGLPTADFFIWNDDFEFTARIMRTRPGIY
                     LPSAVVVHKTKELGTRAADPGERFFNEVRNKVWTFRAGRAFTGPERALRIVVALVNWA
                     RFYWHSSRRDTLRRGLVRGLRAGLGGHPRPNREVLAEAGFELGDRW"
     gene            6056..>7423
                     /locus_tag="VGN19_09540"
     CDS             6056..>7423
                     /locus_tag="VGN19_09540"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEV7196172.1"
                     /translation="MSVVIGGLLRSPVLSSAAPLCGESSVRPGESVAFDRWFAALPLG
                     YWARFTAVGEVLLELTAELTAEPNADPTAGTEVEVAVEASDRDGVVRVLAQGTTRNGR
                     YAVRVPTSECAEGGWVWPRVVVPVGAPAAVSVDFVWKAAGLAPPPRSLAVAIATFNRP
                     QACLRQLSTIAEAVAPGGVLAEVLATVVLVDQGTEPVSADPGFAAVAACLGERLRVVH
                     QANLGGSGGFARGLVEGLSDPAVTHVALLDDDALAQPEGLARAWAFAQASSTPTIVGG
                     HMFDSARPTVLYRLGEVLDRRRFSWTSLPGTPMNTDLAAQRVSQHSWLGPAYEVDFQP
                     WWMALVPRECVDRIGLPLPFFLKWDDVEFGLRAGAAGVRSVVLPGAAVWHDSWAGKGN
                     ETGWQAYFLLRNRIVTAMLHDHRPAPLALEWLAVTARHLVLREPRAAAMRFAALKDLL
                     AGPAWM"
BASE COUNT         1076 a         2498 c         2733 g         1116 t
ORIGIN      
        1 ctggtgggag ccgtgtcgcc gcaggaggtg gcccgccatc tcgccgacgc ggacctgttc
       61 ctcctgccga cccgacacga gaacttctgt gtctccgccg ccgaggccct cgcgtcgggg
      121 cgcccggtgg tcatcgggag ctgcggtggt caggccgagt atgtcgacga acgggtgggg
      181 gagctcgtcc acgagcagac gccggccgcc tacgcggacg cggtgcagaa ggtgctggtg
      241 cggctcgccg aggtcccggc ggaggagttc agcaaccgtg tcgaggagcg gttcagcgtg
      301 gacacggttc gacgcggtta ccacgaggtc tatgccctcg cggtggcaga gcacgaccgg
      361 agagtcgccg tatgagcgcg acctccggcc tcgtcgaggt catcgtcgcc gtccaccaag
      421 ccgagcgccc cgtcgaacgg gccgtgagat ccgtgctgct cggggctccc aagggcacca
      481 gcgtcacggt cgtctgtcac ggcataccgt cctcggtgtt cgagcagcgg ttcgccgacc
      541 tgacctcctc gcagctgcgg ctgatcgagc acgccgacgg catcgcgagt ccggccggtc
      601 cgttcaacgc cggcctggac gcggcccagg cgaagtacgt cgcagtcctg ggctccgatg
      661 acctgctcgc cgctggggcg ctgccggcct gggtggcccg cgctgagcgg acgggcgcga
      721 acgcggtgct cgccagggtg gaacatcagg cgggtggatt ggttcgaact cctcccaccc
      781 gctggggccg ccggacgtca gggctgggcc tggccaagga tcgcttggcg taccgcaccg
      841 caccgctggg tctgctccga cggtccctgg tggacgagca ggggctgcgc ttcacccccg
      901 gcctgtccac gggggaggat ctggcgttcg ggctgcggtt gtgggcgatc ggggaggggc
      961 tgcactatgc ggcggccgac ccggcataca tcgttggtgc ggacgcccag gtgagagtca
     1021 ccatgagccg ccgaccgatc agcgcagacc tggagtgctg cctgcgcgcg gtcgacgcac
     1081 cgtggtttgc caccctcgcc gcgcgtgacc gcactgcggt cgtcatcaag ctggtgcgga
     1141 tccacgtctt cggagccgtc tacaaccggc gcgacctggc gtcctggacg gtccaagacc
     1201 ggcaggacct cagcctcgcg gcgtccgccc tgctgacggc ggctcccgcg gcgagccggg
     1261 cgctgtcgct ggtcgagcga cagctgctca cggcgtgtct cgacgaagcg gcccccgagt
     1321 ccgagctcgc agctctgtct gcccgtcggg ttcggcacgg gcgctggaac accgtggcca
     1381 cagccgacgt gcgcggactc ttgtcagcgc agggaccgct ccggctcatg gctgcgtctg
     1441 ccctcatgcg ctaggtcgat cgtggccggc aggcccagac cggactcgcg agccagcccg
     1501 atgagcacca cgagaatggc caggctgagc acggccaggc tcaccggaag cgcgacgccg
     1561 agcaagatct cgagatagca gagcatcgag accgtgaggg tgaccaccgc cagccacgcc
     1621 gaccgtggcc gagcgaaggc gaggaccaag accaggatct cgccggggaa gaagtagcgc
     1681 tcacgcatgt gtggcagcag aaacggcacg gtcatgagga ccagggcggc caggctcagg
     1741 cgccgcgagg ggtccgacag caccgccgga cgcgcgccga ccagcgcgaa gatcgccagc
     1801 atggccgcga ccgtcagcac gacgaagagg cgcgcgaaaa tggcctcgtc ctggcgagga
     1861 aaccaccccg gcaggctggg gccgtaggcc aggaaatgca ggctccccgc ctgcgtcgag
     1921 tagatgtgca gcagcgaacc gagggggcgt ccggcgagcc aggctgggac aagggcgacg
     1981 atcggcccga cgagggccac caccggcgtc caccaacgct gtcttccgcc gagcagccag
     2041 atcagcagga ggaacgggag caggaacaca gcctggagtt tgaaggcgaa agcaaccccg
     2101 aagatcagcc aggacaggag gtgctggtca cgcaagcagt agaagaggga ccacagcagg
     2161 atcgaggcgt acatggcgtc ggtctgtccc cacgccgcgc tgttcaggaa gacagtgggg
     2221 acgaacatcg tgcccaggcc tgccgcccag ggcacgaggc gtcctcctcg gacctgccgg
     2281 accacggcgg ccaccgcgaa cgcgagactg acgtccccca gcgcggagac tgccttgacg
     2341 gcgacgagcg caggcaggtg aaacagcgac gcgaggtaca gcaggtacag gtacggcggg
     2401 ttgtagtcag cgaaggcttc gcggaagccg ctgaaaccct gttgctggag gtggaggtac
     2461 cagggcgcca ggtagatgcg cacatctggg ctgctgaacg ggccgagggc ccatctgacg
     2521 cccagggcgc acgccaccag gccggcgaac gaggccagca cgaacccctg ccgtccgccg
     2581 cgtagccgcc atgccagggg agtcggcagg gtgccgacgc gtccgtcgct gttcaccatc
     2641 aggtcgtgcc ccttcgtcgc cgtgcgcacg gatcatacgg tcatcgccgg acgcgggggt
     2701 cgtcggaccg ctgcggccgg cccgctgggt ctcgataggg tgctcggatg gccatcccga
     2761 tcgcgcgttt cgcgacgcga atattcgccc cggagatcgg agcggcggcg ttccgagagc
     2821 gacttctggc cgatgccttc gcgagggccg ggtaccgggt cgaggtgctc acgaccgtgc
     2881 ccccggcgtc ggctcccgcc gcggacgacg aggggatctc ggtgagccgc tggccggtgc
     2941 gccgggatgc caacgggaac attcgcgggt acctgcacta cctcagctac gaccttccgc
     3001 ttgccgtccg cctgctgagt cggcgacccc ccgacgtcta tgtcgccgag ccgccgccga
     3061 ccacgggtct ggtcgtgcgg ctggtcgccg ctgtgcatcg tcgcccctac atctggtatg
     3121 ccgccgacgt ctggtcggag gccgcgggcg ccgccggcgc gccgccctgg gtggtgaggg
     3181 tgctccgcgg tgtcgaggcg tgggtgctcc gcggtgcggc ggtggtgctg tcgatctccg
     3241 acggggtcac cgagaagctg gagaccttcg gggtggagga gcagcgcatc ctcacggtcg
     3301 gcaacggggt cgacacgacg gtcttcaccc ccaccggcgc ctcgatggat caaagcgcgc
     3361 cctacttcgt ctacaccggc accatgtccg agtggcaggg tgcgggggtc ttcatccggg
     3421 ccctgaagcg ccatcatgac gccggtggcc gggaccgcat cgtcttcgtg ggccagggca
     3481 gcgagcttcc cgccctacgt cagctcgctg aggagctggt ccccggcgcg gtcgagttca
     3541 ccggggtcct gtcgccggcc gacacggccc agtggatccg cggggcggtt gccgcgctgg
     3601 tctccatcaa gccggggctg ggctatgact tcgccaagcc gacgaagatc tatgccgcga
     3661 cggcgtgcgg ggtgccagtc gtcttcgccg gaaagggtgc aggtccggcg ctggttcaaa
     3721 gccaggacct cggttgggct tgtgactacg acgaggccgc cgtcgccgcg acgttgaacg
     3781 cggcgctgga cgcctcgacc gcgtcggcgg aggacgttca gctgcgccgg gaacggctgg
     3841 tggcctggac cgaagggcat gcctcgctgc gggccatcgc cgcaacaacc tgcgagcgca
     3901 tcgttgccgt gctggcccag cgccccggac gcggcgtgtc tacgggcggt gggtgagcag
     3961 ggcgtcagcc acgcgcttcg cggcatgacc atcgccgtac ggcgtggcat cggtctcggc
     4021 cgggatcgcc cggtcgatga ctcgggcgag gtcgcgtggg tcgtccacga gcacgttcca
     4081 gcccagctcg accgtctcga cccactcggt ctcggtgcgg accgtcgtac acggagtgcc
     4141 cagcaggaac gcctccttct gcaacccgcc ggagtcggtg atcaccccgg tgctgtccat
     4201 gactgcccgg acgagctgcg ggtaggggag tggctccgcg acaacgatcg acccggatgc
     4261 caggtcgagc ccgaactcgg cagcccgcgc gcgcaggcga gggtgggcca ggagcagggt
     4321 cggcacgtcc agctgggaga gcccgtcgat gatggagcga agccgcacct cgtcgtcggt
     4381 gttgtcgggc cggtgcaggg tggcgacccg gaaggcggcg ccccgcagct cgggcggcac
     4441 ctcggtgacc aggttcgaga cgaggtcccg cacccggtac aggacgtcgg tcatgacatc
     4501 cccgacgagg atggaccggt tggcgaggcc ttcggtcgcc aggtgaccca tggccacctc
     4561 ggtgggggcc aggcacaggt ccgctgcgtg gtcggtgagg acgcggttgt gctcctcggg
     4621 catccgtcgg ttgaacgagc gcagcccggc ctcgagatgc gcgaggggaa tgtgcatctt
     4681 caccgcgctc agggctccgg ccactgtgga gttcgtgtcg ccgtagacga ggacccagtc
     4741 gggctggtgc tgctccagca cctcgtccat ggccgccaac atggcgccgg tctgacgtcc
     4801 gtgtgaaccc gagccgaccg cgaggtgcag gtccggtgcg gggatgccca ggtcctggaa
     4861 gaagacgtcc gacatcgccg cgtcgtagtg ctgcccggtg tggacgatca catggtcggc
     4921 atcagtcgcg gccagggctt cggcgaccgg ggccagcttg acgaactggg gccgggcacc
     4981 gacgacactg aggatcttca cgagcgtcac tgtaccgagc agcgcgcgga ccgccggtcg
     5041 ccgacggtgg tgtcgagagc gggcgggtaa ccgctgggta tgctcgcccg gtgagtctga
     5101 ccagcgcgac gccgcagcgc cccagcgccg ggcagacccc caaagtcgtc gccgtggtgg
     5161 tcagctacaa ccgtcgacac ctgctggccg agtgcctgac cgccgtcttt gcgcagacgc
     5221 aaccggtcga cgcggtcgtg gtcgtcgaca acgcctccag tgacggcagc gcagacctgg
     5281 tcgcggaacg gtttccttcc gtcgatctcg tccgcctcac ccagaacacc ggcggcgccg
     5341 gtggcttcgc ggtcgggatg gctcgggcga tcgacgggca cggggccgag ctgctgtggg
     5401 tgatggacga cgacaccatc gccacgcctt ccgcgctcgc cgagctgtgt ggggcctacc
     5461 gcggctacgg tccggacctc gctctggtcg ccagccgcgt gacctggacc gatggtcagg
     5521 accaggatcg aaacatcccg cgaccggtgc cctgggtgaa cgcccgccga ctgcgcgcgg
     5581 cccagtcggt ggggggccgc ccgatgcgca cggcctgctt cgtctcgctt ctggtggcgg
     5641 tcgacgcggt gtgtgccgag ggtctgccga ccgcggactt cttcatctgg aacgacgact
     5701 tcgagttcac cgcgaggatc atgcgtaccc ggccgggcat ctatctgccc agcgcagtgg
     5761 tggtgcacaa gacgaaggag ctggggaccc gggccgccga cccgggcgaa cgcttcttca
     5821 acgaggtacg caacaaggtg tggacctttc gggccggtcg ggccttcacc ggaccggagc
     5881 gagcgctgcg catcgtcgtg gcgttggtca actgggccag gttctactgg cattccagcc
     5941 gccgtgacac gctgcgccgt ggtctggtcc gcgggctgcg agcgggcctt gggggtcatc
     6001 cccgccccaa ccgtgaggtg ctggcagagg ccggtttcga gctcggggac cgctggtgag
     6061 tgtcgtcatc ggtgggctgc tgcggtcacc ggtgctctcc tcggcggccc cgctgtgcgg
     6121 tgagtcgtcg gtgcggcccg gcgagtcggt ggcgttcgac cggtggttcg cagcgctccc
     6181 gctgggctac tgggcgcgct tcacggcagt gggcgaggtg ctcctcgagc tcacggccga
     6241 gctgacggct gaaccgaacg ctgacccgac cgccggcacc gaggtggagg tcgccgtcga
     6301 ggccagcgac cgtgacgggg tcgtccgggt gctggctcag ggaacgaccc gcaacggcag
     6361 gtatgccgtg cgcgtgccga cctcggagtg tgccgagggt gggtgggtct ggccgcgggt
     6421 cgtggtgccc gtcggcgctc cggccgcggt ctcggtcgac ttcgtctgga aagccgctgg
     6481 gctggctccg ccacccaggt ccttggcggt ggccatcgcg accttcaacc gaccgcaggc
     6541 gtgcctgaga cagctgtcca cgatcgcgga agcggtcgcc ccggggggcg tgctcgccga
     6601 ggttctggcc accgtggtcc tggtcgacca aggcaccgag cccgtgtctg ccgacccggg
     6661 tttcgcggct gtggcggcct gtctcggcga gcgcctccgg gtggtccacc aggcgaacct
     6721 cggtggctcc ggcggcttcg cccggggact ggtcgagggc ctctcggacc cggccgtgac
     6781 ccacgtcgcc ctgctggacg acgacgcgct cgcccagccg gaggggctgg cgcgagcgtg
     6841 ggccttcgcg caggcgtcga gcaccccgac gatcgtgggc ggccacatgt tcgactcggc
     6901 gcggcccaca gtgctgtacc gcctgggtga ggtgctggac cgccgccggt tcagctggac
     6961 ctccctgccg ggcacgccca tgaacaccga cctggcggcc caacgggtct cccagcactc
     7021 ctggctcggg cccgcctacg aggtcgactt ccaaccatgg tggatggcgc tggtgccccg
     7081 cgagtgcgtg gaccggatcg ggttgccgct gccgttcttc ctcaagtggg acgacgtcga
     7141 gttcgggctg cgcgcgggcg cggccggggt tcgctcggtc gtcctgccgg gcgcggcggt
     7201 ctggcacgac tcgtgggcgg ggaaggggaa cgagaccggg tggcaggcgt acttcctgct
     7261 tcgcaaccgg atcgtcacgg cgatgctgca cgatcatcgg ccggcccccc tggcgctcga
     7321 atggctggcg gtgacggcac ggcatctggt cctgcgcgag cctcgggcgg ccgcgatgcg
     7381 gttcgccgcg ctcaaggacc tgctggcagg tcccgcctgg atg
//
LOCUS       DASYFY010000475         3989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1872240, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000475 DASYFY010000000
VERSION     DASYFY010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3989
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1872240"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..631)
                     /locus_tag="VGN19_09545"
     CDS             complement(<1..631)
                     /locus_tag="VGN19_09545"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEV7196173.1"
                     /translation="MGVQCVDCVKQQAHAARSTRTVFGGSVTENPVVSYAIIALCVAV
                     FVVQMVQPSVTEQIVFDPGAARDQPWRFVTAAFAHSSISHILFNMLALWVVGAQYLEG
                     LLGRARYAAVYLVSALGGSVVYMLFSSPPPIPYAPPNEQFWGPGTVGASGAVFGLFGA
                     MLVLNRHLGRSSAGMYATIAINAVIGFVVPNIAWQAHLGGLITGAALAGV"
     gene            complement(782..1300)
                     /locus_tag="VGN19_09550"
     CDS             complement(782..1300)
                     /locus_tag="VGN19_09550"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEV7196174.1"
                     /translation="MDVTLKTNHGDINVTLFPDHAPKTVKNFVGLAKGEQEYRDEAGR
                     SNPTPFFDGLIFHRIIPGFMIQGGCPLGQGIGGPGYTFDDEISPDKDFTKPYMLAMAN
                     AGKRMGKGTNGSQFFITVGNTSWLQGKHTIFGEVADAPSREVVDAIAGVPTGANDKPV
                     EDVVIESVVVND"
     gene            1432..2253
                     /locus_tag="VGN19_09555"
     CDS             1432..2253
                     /locus_tag="VGN19_09555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196175.1"
                     /translation="MVFRTKTTSEQTVDTLNATARNAADHAASLMDRVAPAAEVARDR
                     ATTAAVSAKDWSKPHVEAAREWAKPRVDHGIEVAAPKLQEAVEGLAPRIDTARDAIVD
                     SLLPKVAEAIAAVATASAAAKMAATDAAERTPDAVAVLKGDRVAKRRKGKFFLLLGLG
                     AAIAAGVAAFRKSAPREDPWATPLEDPYTAPVSGRDSSVASLADAAKDKATSVADAAK
                     DKASSVADAAKDKASSAADAAKGKAADAADTAKDKAADASDAVDTAASEVKDTVD"
     gene            2335..2865
                     /locus_tag="VGN19_09560"
     CDS             2335..2865
                     /locus_tag="VGN19_09560"
                     /inference="COORDINATES: protein motif:HMM:NF018942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030416 - methylamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MauE/DoxX family redox-associated membrane
                     protein"
                     /protein_id="HEV7196176.1"
                     /translation="MAAGPFLAAAGLLVVAGVPKLSDPLPLVRALRQAGMPAGRLLVR
                     AFALTEVTVGVWALVAPARLSASLVAAAYLLFTVFVVRVLRRGGILGSCGCFGKPDTP
                     ATRTHVVLTLGAALAAAAVAVAPPVSVWSAPVRDLATTAALAALVAFLAWQVMAVLPT
                     TTPAAIRTTVRATTRG"
     gene            2868..3713
                     /locus_tag="VGN19_09565"
     CDS             2868..3713
                     /locus_tag="VGN19_09565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196177.1"
                     /translation="MLAAVIAEGIAVLLLGLLVLGLLRSHALILKALHELGAGLELEK
                     EAGTGVTTATTGGSPGPVPVELESGVVPATRKDSTRAHDIVGTDLDRVERRLQVTTPG
                     SRTLLAFLTSGCSVCETFWDEFRAAVSVPGQGSLRVIAKGAEEESIPSLRSLAGDREV
                     VQSSAAWVDYDIPGSPYFVYVEDGRVTGEGSATTWAQVRDLMAQGVSDSEEARTAAGR
                     VGPGLLVGDALGRGERDALPRMDAELIAAGVRPGDPSLYESPDAAADRVEHVDQVHDL
                     HPHEH"
     gene            3805..>3989
                     /locus_tag="VGN19_09570"
     CDS             3805..>3989
                     /locus_tag="VGN19_09570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196178.1"
                     /translation="MLSSISPLGERARNSRWWVTTTAYLVGSLAGGLALGGLAGLVGR
                     LLPTAARTSHGSLGVLAL"
BASE COUNT          599 a         1375 c         1421 g          594 t
ORIGIN      
        1 tgactccggc caaggcggcc cccgtgatca ggccgcccag atgggcctgc caggcgatgt
       61 tggggacgac gaaaccgatc accgcgttga tcgcgatcgt cgcgtacatg cccgccgagg
      121 acctgcccag gtggcggttg agcacgagca tcgccccgaa gagtccgaag accgcgccgg
      181 aggcgcccac cgtgcccgga ccccagaact gctcgttcgg cggcgcgtac gggatcgggg
      241 gcgggctgct gaacagcatg tacacgacgg agccgcccag agcgctgacg aggtacaccg
      301 cggcataccg cgcgcggccg agcaggccct ccaggtactg cgctcccacc acccacagcg
      361 ccagcatgtt gaacaggatg tggctgatcg aggagtgggc gaaggccgcg gtgacgaagc
      421 gccagggctg gtcgcgggcc gcgcccgggt cgaacacgat ctgctcggtc accgacggct
      481 ggaccatctg aacgacgaag accgcgacac acaacgcgat gatcgcgtag gacaccacgg
      541 ggttctccgt gacgctccca ccgaacaccg tgcgggtcga ccgcgctgcg tgggcctgct
      601 gcttgacgca gtcgacgcac tgcacgccca ccgcggccgg ccgctgacac tcgggacaga
      661 ctggccggcc gcagcgttgg caccgcacat atgacacccg ttgggggtgt ctggggcaga
      721 ccggcgcggt ctgctgttga accggtgcgg tgggatcgct catgtgccga aagggccgag
      781 gtcagtcgtt gacgacgacg gactcgatga cgacgtcctc gaccggcttg tcgttcgcac
      841 cggtgggaac accggcaatc gcgtcgacga cctcgcggct cggagcgtcg gcgacctcgc
      901 cgaagatcgt gtgcttgccc tgcagccagc tggtgttgcc gacggtgatg aagaactgcg
      961 acccgttggt gcccttgccc atgcgcttgc cggcgttggc catcgcgagc atgtacggct
     1021 tggtgaagtc cttgtcgggg ctgatctcgt cgtcgaaggt gtagcccgga ccgccgatgc
     1081 cctggccgag cgggcatccg ccctggatca tgaagccggg gatgatgcgg tggaagatga
     1141 gcccgtcgaa gaagggggtg gggttcgagc gaccggcttc gtcgcggtac tcctgctcgc
     1201 ccttggccag gccgacgaag ttcttgacgg tcttgggggc gtggtcggga aacagcgtga
     1261 cgttgatgtc gccgtggttg gtcttgaggg tgacgtccat gccggtcatc cttccacgag
     1321 gacctcggat ggcgggcggc ggcgaggcag aacagtgacc cacgggcttg cccaccagcg
     1381 gaaacagggc aggatgggtc tggaaaccta gtccgctacg tcccaggagg catggtgttt
     1441 cgcaccaaga ccacatctga gcagaccgtc gacaccctga acgccacggc acgcaacgct
     1501 gccgaccacg cggcgtcgct gatggaccgg gtcgccccgg ccgccgaggt cgcacgggac
     1561 cgcgccacca ccgccgcagt atcggccaag gactggagca agccgcacgt cgaagccgcg
     1621 cgcgagtggg ccaagccccg tgtcgaccac ggcatcgagg tcgctgcgcc caagcttcag
     1681 gaggccgtcg agggcctggc cccccggatc gacaccgccc gcgacgcgat cgtggacagc
     1741 ctgcttccga aggtcgccga ggcgattgcc gccgtggcga cggcatctgc tgccgccaag
     1801 atggcggcca ccgatgccgc cgagcgcacc cccgatgctg tcgcggtgct caagggcgac
     1861 cgcgtcgcca agcgccgcaa gggcaagttc ttcctgctgc tcggcctcgg cgccgcaatc
     1921 gccgctggtg tcgcggcgtt ccgcaagagc gccccgcggg aggacccctg ggccacgccg
     1981 ctcgaggacc cgtacacggc cccggtctcg ggccgcgact cgtcggtggc cagcctcgcc
     2041 gacgccgcca aggacaaggc gaccagcgtc gcggacgcgg ccaaggacaa ggccagcagc
     2101 gtcgcggacg cggccaagga caaggccagc agcgccgccg acgcggcaaa gggtaaggct
     2161 gccgacgcgg ccgacaccgc caaggacaag gcagcggacg ctagcgacgc cgtcgacacc
     2221 gccgcgagcg aggtcaagga caccgtcgac tgaccggcac tctgaactga gcggcagggc
     2281 gcggcgcaga acacccgcgg gatcccgggg gtaccgtgac cctgcatgtg ggacatggct
     2341 gccggaccct tcctcgccgc agcgggcctg ctcgttgtgg ccggggtgcc caagctgtcc
     2401 gatcccctgc cgttggtgcg agccctacgc caggccggta tgccggcggg ccggctgctc
     2461 gtccgcgcct tcgccctgac ggaggtgaca gtgggggtgt gggcgctggt cgctccggcg
     2521 cgtctcagcg cctcactggt ggccgcggca tacctgctgt tcaccgtctt tgtcgtgcgt
     2581 gtgctgcggc gcggggggat cctcggctcc tgcgggtgct tcggcaagcc tgacactccc
     2641 gcgacccgga cccacgtcgt actcaccctg ggcgccgcgc tggccgctgc ggctgtcgcc
     2701 gtagccccac cggtgtcggt gtggtccgcg ccggtgcgcg accttgccac gacagcggcc
     2761 ctggcggccc tggtcgcctt tctcgcctgg caggtcatgg ccgtcctgcc aaccaccacg
     2821 cctgctgcca tccgcaccac cgtccgcgcc accacgaggg gctgaccatg ctcgctgccg
     2881 tcattgccga gggcatcgcc gtcctcctcc ttggcctgtt ggtgctgggg ctgctgcgta
     2941 gccacgccct gatcctcaag gcgctgcacg agctcggcgc cggactcgag ctggagaagg
     3001 aggccggcac cggggtgacc accgcgacca cgggcggcag ccccggcccc gtgcccgtcg
     3061 agctggagtc gggagtcgtc ccggcgaccc gcaaggactc gacccgcgct cacgacatcg
     3121 tcggcaccga cctcgaccgg gtcgagcggc gccttcaggt cacgaccccg ggctcccgga
     3181 cgctgctggc attcctcacc agcgggtgca gcgtgtgtga gacgttctgg gacgagttcc
     3241 gagcagccgt gtccgtgccc gggcaaggat cgctccgagt catcgcgaag ggtgccgagg
     3301 aggagtcgat tccgagcctg cgatcgctgg ctggcgatcg tgaggtggtg cagtcctcgg
     3361 ccgcgtgggt cgactacgac atcccggggt ccccgtattt cgtctatgtc gaggacggtc
     3421 gggtgaccgg cgagggctcg gccaccacct gggcgcaggt tcgggacctg atggcccagg
     3481 gggtgtcgga cagcgaagag gctcgaaccg cggcgggtcg cgttgggccc gggctgctcg
     3541 tgggcgacgc gttgggccga ggagagcgag atgcgttgcc ccgcatggat gccgagctga
     3601 tcgctgccgg agttcgaccg ggcgatccca gcctgtacga gtcaccggac gccgccgccg
     3661 accgtgtcga gcacgtcgac caggtgcacg acctccaccc gcacgagcat tgacatgtcg
     3721 gtgaccgtga tcgcggtgac cttggggctg cctatggcct tggtggctgc gctgcgggcg
     3781 acctggtcac cttgaggcga gtcgatgctc tcgagcatca gcccgctcgg tgagcgggcg
     3841 cgcaactccc ggtggtgggt gaccaccacg gcatacctcg tgggttcgtt ggcaggcgga
     3901 ctcgcgctgg gcggactcgc cggcctggtc ggccgcctcc tgcccactgc ggcgcgcacg
     3961 tcgcacgggt cgctgggcgt cctcgccct
//
LOCUS       DASYFY010000476         5658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_821755, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000476 DASYFY010000000
VERSION     DASYFY010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5658
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_821755"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /locus_tag="VGN19_09575"
     CDS             complement(<1..905)
                     /locus_tag="VGN19_09575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196179.1"
                     /translation="MATFTVRPLGAFSLQESALFGFGQRLRPGGVGVRDPGFDGVMRL
                     AFCVDGDYETQVGVEVRQDADGVHGLVHGEAESCVIERQTARVLSLEHDARGYDQVCE
                     RDPVIARLQAAAPGLRPPLFYSPYEAAVWAVLSARRPSWQMDRVRTQLAQAHGRVFDV
                     AGMPLAALPTPSALLRVTGFEGIDEARLSRIHGVARAAADGLLDVATLRAMDPHEAMT
                     VLQQIKGIGRFYAALVVIRATGVTDVLPTNEPKALELAGRLYGDGTPLSVERFTEVAE
                     AWRPWRTWCTVLLRSAGSRLSPGAAG"
     gene            998..1426
                     /locus_tag="VGN19_09580"
     CDS             998..1426
                     /locus_tag="VGN19_09580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7196180.1"
                     /translation="MANLVVHFEIHASEPQRLVDFYAELFGWTFTQFGDMPYWAIDTG
                     EGAIGPDRPGRGVNGGLTQRQGGAPERGAPVNGCNVVVGVDGSVDEVFQKGLDLGGTE
                     ALPLADMQGIGRVGYLLDPDGNVFGLISPVLSDGTNVMEA"
     gene            complement(1478..2086)
                     /locus_tag="VGN19_09585"
     CDS             complement(1478..2086)
                     /locus_tag="VGN19_09585"
                     /inference="COORDINATES: protein motif:HMM:NF044515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7196181.1"
                     /translation="MTTVSRDEGKALRADAARNRARLLECATTLFAERGVETSLDDVA
                     KAAGVGIGTLYRHFPTREDLVLAVYGAQIEALDERSRELVARDDPGEALREWMRGFVD
                     FYAVKQGMVTLLRTMMAGSRSEHFEHTRATLQQAAERMLSPAIAAGVIRQDVAAPELL
                     RALGGICLTSDPKTTPASSTLALVDLVYDGLRFGAPVGASHR"
     gene            2227..3699
                     /locus_tag="VGN19_09590"
     CDS             2227..3699
                     /locus_tag="VGN19_09590"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196182.1"
                     /translation="MSSTAVTATPIRTWLTLAVVLTTQMMIVLDSAIVNIALPDMQQA
                     LHIAPASLSWVVNAYTLAFGGLLLLGARAGDLFGRRTVFAIGMILFTVASLLGGFADA
                     GAHLFLARAAQGVGAALVAPSALAILMGLYPEAKDRTRAIGYYTIVSASGAAVGLIAG
                     GLLTSYASWRWVMFVNVPIGLVVLAVSRIALPTSRSQHGRIDVAGSLLSTLGMTALVY
                     GFIRAASDGWGNAVALASFGAAVVLMVAFVAVELRVAHPITPLHLFADRERAGAYVAR
                     LLLVAGSMGAFFFLSQYFQLVLGWSPVRAGMAFVPFPVAVFVSSQLATRLFVPRYGGR
                     VVMLVGMALSAVGLVMLTRVSVGTTYAELVGSMVVFALGNGTAFVPLTASGMARVPAH
                     EAGIASGLVNVTQQLGGAVGLAVLVTVFATAGPGAAAGPHASDRAKQLFVLGAGRGFG
                     VAAALVVLGVVLVLAMTKPRVRTPVAVAVSPEARVLEPVA"
     gene            complement(3760..4164)
                     /locus_tag="VGN19_09595"
     CDS             complement(3760..4164)
                     /locus_tag="VGN19_09595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196183.1"
                     /translation="MFQKARTTSPNPTEVRSNDIRATQARLLDELASVGAPRDLETGV
                     TADPSDDRVAHLELVDDLSSPPRFRPTRAGRYVITDRSGRPIGSAMGDYVIGFTVSCW
                     EQRWRFPDLDYAKIVVSLEAEARNRAKLRDAS"
     gene            4497..5606
                     /locus_tag="VGN19_09600"
     CDS             4497..5606
                     /locus_tag="VGN19_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196184.1"
                     /translation="MISDKSRTTMFPRRACRALAVLGAVALAAALAPAAAQASNLGAT
                     DPSDVLSHPYRHGVVPTTTAALPNLGLNNLRYGGGTGGVGVTTGAPKVYLVFWGSQWG
                     TQGSDAKGNATFTGDPQNTAPILQGFFKGLGTSGDSWSGVMTQYCEGVASGSTSCPSG
                     TGHVGYPTGGALAGVWVDPSAAAPSQATGNQIGAEAVKAAGHFGNTTAAANRNIQYVV
                     LSPTGTHPDGFNTTTSQFCAWHDYTGDTSLSGGAPSSPYGPLAFTNEPYVTDMGSSCG
                     SNFVNAGPSGVTDGVTIVEGHEYAETITDQFPAGGWTDLTGYENGDKCAWISSGQGAS
                     QNISLSTGSYPVQSTWANDFNGGQGGCEVTHPTVS"
BASE COUNT          832 a         1969 c         1931 g          926 t
ORIGIN      
        1 ccggcggccc ccggtgacag gcgcgatccg gctgaccgga gcagcaccgt gcaccaggtg
       61 cgccagggcc gccacgcctc agcaacctcg gtgaacctct cgacgctcag tggtgtgcca
      121 tcgccataca gtcgtccggc cagctcgagt gccttcggct cgttcgtcgg caggacatcg
      181 gtgactcccg tggcgcgaat gacgaccagg gctgcataga accgcccgat ccccttgatc
      241 tgctggagca cggtcatcgc ctcgtggggg tccatcgcgc gcaaagtcgc cacgtcgagc
      301 agtccatcgg ccgcggcccg ggccacccca tggatccggg acagccttgc ctcgtcgatg
      361 ccctcgaagc cggtcacccg cagtagcgcg gacggggtcg gcagggcggc caacggcata
      421 cccgcgacgt cgaacacccg gccgtgcgcc tgggccagct gggtgcgcac cctgtccatc
      481 tgccagctcg gcctccgcgc gctcagcacg gcccacacgg cagcctcgta gggcgagtag
      541 aacaggggag gacgcagccc tggcgccgct gcctgcagcc gcgcgatgac gggatcccgc
      601 tcgcacacct ggtcgtagcc cctggcgtcg tgctcgaggg acagcacgcg ggcggtctgc
      661 cgctcgatga cgcaggattc ggcctcgccg tggaccaacc cgtggacgcc gtcggcgtcc
      721 tgccggacct cgaccccgac ctgcgtctcg tagtcgccat ccacgcagaa cgccaaccgc
      781 atgacgccgt cgaaacccgg gtcccgcacc ccgacgcctc cgggccgcag gcgctggccg
      841 aacccgaaga gggccgactc ctgaaggctg aacgccccga ggggccgcac cgtgaaagtc
      901 gccatgtagc cagcgtgcca gcggccaccg acaggcctgg accccccggc agccgcagcg
      961 ctggcgtagc gtgggtgaac tggccaaggg aggcgtgatg gcgaacctcg tcgtgcactt
     1021 tgagattcat gcgtccgagc cgcaacggct cgtggacttc tacgccgagc tgttcgggtg
     1081 gaccttcacc cagttcggcg acatgccgta ctgggccatc gacacggggg agggcgccat
     1141 aggcccggac cgaccgggcc gcggcgtcaa cggtggcctg acccagcgtc aggggggcgc
     1201 cccggagcgt ggagccccgg tcaacgggtg caatgtcgtc gtcggggtcg acggcagcgt
     1261 cgacgaggtc ttccagaagg ggctggacct gggcgggacc gaggcgctgc cgttggcgga
     1321 catgcagggc atcggccggg tgggctacct tctcgacccc gacggcaacg tgttcgggct
     1381 catctcgccg gtgctgtccg acggcacgaa cgtgatggag gcgtaggcgc ctacctgagg
     1441 atgggatgag actttgaggt cgcgtcctgg ccgggtgtca gcggtgggag gcgccgacag
     1501 gagccccgaa acgcagcccg tcgtacacca ggtcaaccag cgccagcgtg gacgaggccg
     1561 gggtggtctt cggatcactg gtcagacaga tgccacccag cgcccgcaat agctcgggag
     1621 cggcgacatc ctgtcggatc actccagccg cgatggccgg ggacaacatc cgctcggcgg
     1681 cctgctgcaa ggtggcccgg gtgtgctcga aatgttcgga ccggctccct gccatcatcg
     1741 tccgcagcag cgtgaccatg ccctgcttga cggcgtagaa gtcgacgaag ccgcgcatcc
     1801 attcgcgcag ggcctcgcca gggtcgtccc tggcgacgag ctcgcgagac cgttcgtcca
     1861 gcgcctcgat ctgagcgcca tagacggcca ggaccagatc ctcgcgggtg gggaagtggc
     1921 gatagagcgt gccgatgccc actccggccg ccttcgccac gtcatccagc gaggtctcga
     1981 cgccgcgctc ggcgaacagc gtcgtggcgc actcgagcag cctcgcgcgg ttgcgggcag
     2041 cgtcggcgcg cagcgccttc ccctcgtcac gggacaccgt ggtcaccacc ttgcataaac
     2101 ggagccatcc tccgtatagt acttcgaagc ggagggaatc tccgatttcc ttcttctcga
     2161 cgacgcggag ggggcctccg cttccacgtc atcatatctc gctctgtcgg gaaggactcc
     2221 caacccatga gttccactgc tgtcacggcc acccccatcc ggacctggct cacccttgcc
     2281 gtcgtcctga cgacccagat gatgatcgtc ctcgactcgg cgatcgtgaa catcgccctg
     2341 cccgatatgc agcaagccct gcacatcgcg cccgccagcc tctcgtgggt ggtcaacgcg
     2401 tacaccctcg ccttcggcgg actgctcctg ctgggcgcgc gggccgggga cctgttcggc
     2461 cgccggacgg tcttcgccat cgggatgatt ctgttcaccg tcgcgtcctt gctcggcggc
     2521 ttcgccgatg ccggcgccca cctcttcctc gcccgggccg cccaaggcgt cggcgccgcg
     2581 ctcgtggccc catccgcgct cgccatcctc atgggcctct accccgaggc gaaggaccgc
     2641 accagggcca tcggctacta caccatcgtg tctgccagcg gcgccgccgt cggcctcatc
     2701 gccggtggac tgctcacctc gtacgcgtcc tggcgctggg tgatgttcgt caacgtgccc
     2761 atcgggctgg tcgtcctggc cgtgtcccgg atcgctctgc cgaccagccg ctcccagcac
     2821 ggacgcatcg acgtggccgg cagcctgctg tccaccctgg gcatgacggc cttggtctac
     2881 gggttcatcc gggccgcatc ggacgggtgg ggcaatgcag tggccctggc gtcgttcggc
     2941 gcggccgtcg tgctcatggt ggccttcgtg gccgtcgagc tcagggtcgc ccaccccatt
     3001 acgccgttgc acctgtttgc cgaccgcgag cgggcggggg cctatgtggc ccggctgctc
     3061 ctcgtggcag gcagcatggg ggcgttcttc ttcctgagcc agtacttcca gctcgtgctg
     3121 ggctggtcgc cggtgcgggc ggggatggcg ttcgtgccct tcccggtcgc ggtgttcgtg
     3181 agctcccagc tggcgacgcg gctgttcgtg cctcgctacg gcggccgcgt ggtgatgttg
     3241 gtcgggatgg ccctgtccgc ggtcgggctg gtcatgctga cccgagtctc ggtgggcacg
     3301 acgtatgccg agctggtggg atcgatggtc gtcttcgcct tgggtaacgg cacggcgttc
     3361 gtgcccctga cggcatcggg gatggcccgg gtgccggccc acgaggccgg gatcgcctcg
     3421 ggtctggtca acgtgaccca gcagctcggt ggcgcggtcg gcctggcggt gctcgtcacc
     3481 gtcttcgcca ccgcaggtcc cggcgctgcg gccggtccgc atgcctcaga ccgggccaag
     3541 cagctgttcg tgctgggcgc ggggcgcggg ttcggggtgg cggcggcgct cgtcgtcctc
     3601 ggagtggtgc tcgtgctcgc gatgaccaag ccgcgggtca ggactccggt agcggttgcg
     3661 gtctcccccg aagcccgggt gctggagccc gtcgcctagc agatcggcgt gccagggtgt
     3721 gccggcgccc agaggggccg ccggcacacc ctgcgaactt caggaggcgt cgcgcagctt
     3781 ggcgcggttg cgggcctcgg cttccagtga gacgacgatc ttggcgtagt ccaggtctgg
     3841 aaagcgccat cgttgctccc agcacgagac cgtgaacccg atgacgtagt cgcccatggc
     3901 gctgccgatc gggcggccgc tgcggtcggt gatgacgtag cggcccgctc gggtcggccg
     3961 gaaccgggga gggctgctca ggtcgtccac cagctcgagg tgggcgacgc ggtcatcact
     4021 cggatcggcc gtcacgccgg tctcgagatc tcggggggcg cccacggaag cgagctcgtc
     4081 aaggagccgc gcctgcgtcg cccggatgtc gttcgaccgg acctcggtcg gattcggtga
     4141 ggtggttcgt gccttctgaa acattcggac cctgcgtcca actgtcggca tgtcgagcct
     4201 ttcgcggtct cggacgtcat ggaaacgtca tgcagagttc aggaaagggt aaaaacccgg
     4261 taaaagtcaa gcattttggc cgagtcgccc atagtccgtt cggctgatgg gctcggttga
     4321 tgggcttggc ggcaggtagc ggctggtagc caccgatctc tggcccgtcg ccctttgcca
     4381 aacccagaag aatttgggct gatcggcact ttggtgccca taacgggggg cggaatggct
     4441 cgttggccat ggtgggtgac catcacgggt cgctctcccc gaacgaaggg cccctcgtga
     4501 tctccgacaa gtccagaacg acgatgttcc cgcggcgggc ttgccgcgcc ctggctgtcc
     4561 tgggtgccgt cgctctcgct gcggcactcg cgcccgcggc cgcccaggcg tccaacctgg
     4621 gtgcgaccga cccgtcagac gtcctcagcc acccctaccg gcacggcgtg gtccccacca
     4681 ccactgcggc gctgcccaac ctcggcctca acaacctgcg ctacggcggg gggaccggcg
     4741 gggtcggcgt gaccaccggc gctcccaagg tctacctcgt gttctggggc tcgcagtggg
     4801 gcactcaggg ctcggacgcc aagggcaatg ccacgttcac cggcgacccg cagaacaccg
     4861 cgccgatcct ccagggcttc ttcaagggcc tggggacgag cggcgactcg tggtcgggcg
     4921 tcatgacgca gtactgcgag ggcgtggcct cgggaagcac gagctgcccc agcggtaccg
     4981 ggcacgtcgg ataccccacc ggtggggcgc tggccggggt gtgggtggac ccgtccgcgg
     5041 ccgcaccgtc ccaggcgacc ggaaaccaga tcggcgctga ggcggtcaag gcagccggcc
     5101 acttcggcaa caccaccgcg gccgccaacc gcaacatcca gtacgtcgtg ctgtcgccca
     5161 ccgggaccca tcccgacggg ttcaacacga cgacttcgca gttctgcgca tggcacgact
     5221 acaccggtga caccagcctg tccggtggcg cgccaagctc gccttacggt ccgctggcct
     5281 tcaccaacga gccgtacgtg acggacatgg gctccagctg cggctcgaac ttcgtcaatg
     5341 ctggtcccag cggcgtcacc gatggtgtga cgatcgtcga gggacacgag tatgccgaga
     5401 ccatcacgga ccagttcccg gctggtggtt ggaccgacct gaccggatat gagaacggcg
     5461 acaagtgcgc ctggatctcc tccggccagg gcgcgtcgca gaacatctcg ctcagcaccg
     5521 gtagctaccc cgtgcagtcg acctgggcca atgacttcaa cggcggtcag ggcgggtgcg
     5581 aggtcaccca ccccacggtc agctgaggcg gtcaaccttc acgaacggac gtcgtgcccc
     5641 gcgcagcctg ctgcgcgg
//
LOCUS       DASYFY010000477         3220 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_454027, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000477 DASYFY010000000
VERSION     DASYFY010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3220
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454027"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VGN19_09605"
     CDS             <1..375
                     /locus_tag="VGN19_09605"
                     /inference="COORDINATES: protein motif:HMM:NF024783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEV7196185.1"
                     /translation="HQSMFRGMVIDAYDVRCAVCRLKHGDLLDAAHIVADREETGLAI
                     VSNGISLCKIHHAAYDRNLLGVSADYVVHINERLLAETDGPMLKHGLQEMHGQGLTLP
                     RHKASRPDPERLSTRFTVFAAS"
     gene            395..964
                     /locus_tag="VGN19_09610"
     CDS             395..964
                     /locus_tag="VGN19_09610"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03086 family metal-binding protein"
                     /protein_id="HEV7196186.1"
                     /translation="MDVAQLKAAQDSVVAVLRWAEEDQWSEGTPCPDWDVRALVEHLI
                     TGNERFVVRLAGEQPGPPHDRSGSTTKDLVEAYEQTNGEVLEAFGQPAAMQRVSQWPI
                     GPLQGTDALGLKITETLVHGWDLQQALGTRIDFDEATIAEAHAWSEPMLARIPEGRNP
                     FGTPQECPPHAAPLDRLAALLGRPQTAVS"
     gene            complement(957..1445)
                     /locus_tag="VGN19_09615"
     CDS             complement(957..1445)
                     /locus_tag="VGN19_09615"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7196187.1"
                     /translation="MSKDAVERMTRQWRRERPDIDPESMALFARLSRAQASAGEAIEA
                     TLARFGINRGEFDVLASLRRSGEPFELSAGALAAAVVLSPSAMTNRLKRLEEHGLVTR
                     RPDPGNGRVVLVALTSSGRGLVDKAVVAHVATLDGLLSGFSAREVRAMSGLLARLESA
                     TS"
     gene            1521..1919
                     /locus_tag="VGN19_09620"
     CDS             1521..1919
                     /locus_tag="VGN19_09620"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEV7196188.1"
                     /translation="MERPLDLFYDHLSRGDLAAAGRLLSKDSALHVPGRSPNTGTYQG
                     RDAIIGFVAGAAQATGNTLRMTVHRVLDDGDWSVAIATYTATRTTNEGPQHLENNLAH
                     VARLEDGLVAESWLHSRDQYEVDEFWSAAS"
     gene            1916..2356
                     /locus_tag="VGN19_09625"
     CDS             1916..2356
                     /locus_tag="VGN19_09625"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7196189.1"
                     /translation="MTRFVETRVVSTDLPTTRSLVLDWSRDPEWRTAVTSMTAAPPGS
                     ATRGQHLLETMRFAGATFTTPTHIVDADDTSARFEGGSDTVRISGRRLLEPTPNGTRV
                     TAEVDIRFRGPATPLTWLLAPAYRRQHRDDLDRLATRLTHQVVS"
     gene            complement(2349..2675)
                     /locus_tag="VGN19_09630"
     CDS             complement(2349..2675)
                     /locus_tag="VGN19_09630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196190.1"
                     /translation="MTTPPPTGGASTPPLSQVPPPTLTPPVSPPKTPSDSFGPQTLTG
                     AAAKHAPTGCILLTTSGGVVELVGPLAAGALAHPRVTVVAMPHPEIPSPCDVTTMVVQ
                     SVVAAS"
     gene            complement(2943..>3220)
                     /locus_tag="VGN19_09635"
     CDS             complement(2943..>3220)
                     /locus_tag="VGN19_09635"
                     /inference="COORDINATES: protein motif:HMM:NF045214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protease"
                     /protein_id="HEV7196191.1"
                     /translation="PQTLYRLDGTPWRTRIQIYDAPFSLTKGDSFTLHFNGQASYIRG
                     VAGNPLFDDTKNYFDTNQPEHGVKLPAAGVKIRVLSENGTSMRIRVS"
BASE COUNT          562 a         1151 c         1018 g          489 t
ORIGIN      
        1 catcagagca tgttccgcgg aatggtgatc gacgcttacg acgtgcgctg cgctgtttgc
       61 cggctgaagc acggtgatct gcttgatgcc gcacacatcg tcgctgacag agaggaaacc
      121 ggcctcgcga tcgtcagcaa cggaatcagt ctgtgcaaga tccaccatgc tgcttatgac
      181 cggaacctct tgggggtctc cgctgactat gtcgtccaca tcaatgagcg gttgctggcc
      241 gagacggatg gacccatgct caagcacggc ttgcaagaga tgcacggcca gggactcact
      301 ttgccgcggc ataaggccag tcgtcctgat cccgagcgcc tgagcacgag gttcaccgtt
      361 tttgctgcca gctgagcacc gctacggtcg gctcatggac gttgctcaat tgaaggccgc
      421 tcaggactcc gtcgttgctg ttctgcgatg ggcggaggag gaccagtgga gcgagggcac
      481 tccctgcccc gactgggacg tccgtgctct ggtcgagcac ctgatcactg gcaacgagcg
      541 gttcgtcgtc cgacttgccg gtgagcagcc cggtccgcct catgaccgca gtggctcgac
      601 caccaaggac ttggtcgagg cgtacgagca gaccaacggg gaggtgctcg aagccttcgg
      661 tcagccggca gctatgcagc gcgtctctca gtggcccatc ggcccgctcc agggcacgga
      721 tgccctgggt ctgaagatca ccgaaacgct ggtccacggc tgggacctcc agcaggccct
      781 cggcacgagg atcgacttcg acgaggccac catcgcggag gcccacgcct ggagtgagcc
      841 gatgctggcc cgtatccccg agggccggaa tcccttcggc acgcctcagg aatgcccacc
      901 ccacgccgca ccgttagacc gtctcgccgc gctcctgggc cgaccgcaga ccgccgtcag
      961 ctagtcgccg actcgaggcg cgccaacagc ccggacatcg cacgaacctc ccgcgcgctg
     1021 aaccccgaca gcagcccgtc gagggtggcc acgtgagcga ccaccgcctt gtccaccagc
     1081 cctcgcccgg acgaggtcag cgccaccagg accactcggc cgttccccgg atccggacgg
     1141 cgggtcacca gtccgtgctc ctcgagccgc ttcaggcggt tggtcatcgc cgacggcgac
     1201 agcaccaccg ctgcagccag cgcgccggcc gacagctcga acggctcgcc cgaccgtcgc
     1261 agcgacgcca ggacatcgaa ctcgccacgg ttgatcccga acctggccag cgtcgcctcg
     1321 atggcctcgc cggccgacgc ctgggcgcgg ctcagccggg cgaacagcgc catcgactca
     1381 gggtcgatgt ctggtctctc ccgccgccac tggcgggtca tccgctccac cgcatccttc
     1441 gacacggaga cagtttgaca tggaaacatc aatccgtcac tatcgttcca catcaaagag
     1501 tcatgcatga aggaggagca gtggaacgcc cgttggacct cttctacgac cacctgagcc
     1561 ggggtgacct ggccgccgcc ggtcggctcc tgagcaagga ctcggccctt cacgtccccg
     1621 gtcggagccc gaacaccggg acgtaccaag gacgcgatgc gatcatcggc ttcgtcgccg
     1681 gagccgccca ggccaccggc aacacgctgc ggatgaccgt ccaccgggtg ctcgacgacg
     1741 gcgactggag cgtcgccatc gcgacctaca cggcgactcg cacgaccaac gagggaccgc
     1801 agcacctcga gaacaacctg gcccacgtcg cgcggctcga ggacgggctc gtcgcggaga
     1861 gctggttgca cagccgcgac cagtatgagg tcgacgagtt ctggagcgcc gcctcgtgac
     1921 caggttcgtc gagacccgtg tcgtctccac cgatctcccc acgacaagat cgctcgtcct
     1981 ggactggtcc cgcgaccccg agtggcgtac cgccgtcacc tcgatgaccg ccgccccacc
     2041 aggatccgcc acccgcggtc agcacctcct ggagacgatg aggttcgccg gcgccacctt
     2101 cacgaccccg actcacatcg tcgatgccga cgacaccagt gcacgattcg agggcggcag
     2161 cgacacagtt cgaatcagcg gccgtcggct cctcgaaccc acgccgaacg ggacccgcgt
     2221 gacggccgag gtcgacatcc gcttccgcgg gccggccacg ccgctcacct ggctactggc
     2281 ccccgcctac cggcggcagc accgagacga cctcgaccgg ctcgcaaccc ggctgaccca
     2341 ccaggtcgtc agctagccgc caccaccgac tggaccacca tcgtcgtcac gtcgcacggc
     2401 gaagggatct ccgggtgcgg catcgccacg acggtcacgc gcggatgcgc cagcgcgcca
     2461 gcggccagcg ggccgaccag ctcgacgacc ccacctgacg tcgtcagcag gatgcatcca
     2521 gtgggcgcgt gcttcgcggc cgcgccggtc agggtctgcg ggccgaacga gtccgacggc
     2581 gtcttcggcg gggagaccgg tggtgtcaac gtcgggggcg ggacctggct gagtggcgga
     2641 gtcgaggctc cgccggtcgg tggtggtgtg gtcatcgagc ctccagtcga gcttccagtc
     2701 gagctggaaa gtgacgaggt cgccggcgac gaggtcgcag ctgacccggc agcaccctcc
     2761 ggtatgcgag cactcccgca accggccagg gcggcaccca gcccgacgac ggcgaccgct
     2821 cgcgcaacga ctcgcatacc catcaagacc cgcgagcctg ccctttcgtt ccagagctgc
     2881 acggcgggcc gggagacacg ctcccggccc gccgcataca gcaggtatcg ctcagaccag
     2941 cgtcaggaga cgcggatccg catcgacgtt ccgttctcgc tgaggacccg aatcttcact
     3001 ccggcggccg ggagcttgac gccgtgctcc ggctggttcg tgtcgaagta gttcttcgtg
     3061 tcgtcgaaca gcgggttacc cgccacacca cggatgtagc tcgcctgacc gttgaagtgc
     3121 agcgtgaacg agtcaccctt ggtgaggctg aacggtgcgt cgtagatctg gatccgcgtc
     3181 cgccatggcg tgccgtcgag ccggtagaga gtctgcggtc
//
LOCUS       DASYFY010000478         2029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1821162, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000478 DASYFY010000000
VERSION     DASYFY010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1821162"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1019
                     /locus_tag="VGN19_09640"
     CDS             <1..1019
                     /locus_tag="VGN19_09640"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7196192.1"
                     /translation="QTTTPLYTSADVECVLELVRSVPFRTPQATAAGATVTLHRAGHV
                     LGSASVLVSIGGRSVLFSGDLGRPRHPLLQPCADPPPAHAVVLESTYGNRIHPQLAGM
                     DEHEPLAAAIRRTVGRGGSVLIPAFAVDRTELVLVALARLTAQQRIPRVPIHVDSPMA
                     LAALEVYQRPDLAAEMRPEPLRELLSMTNVHEAKTPDESRRLNTPGTPSIIVSASGMA
                     TGGRVVHHLKSLLPHAKNTVVLSGYQAVGTRGRSLQEGAREVKLLGGYVRVRADVVVD
                     DTFSVHADADELVSWLDRLPRPPEVVYLVHGEPEARQALAERVRESIDCAVVLPRLGE
                     RVVV"
     gene            complement(1072..>2029)
                     /locus_tag="VGN19_09645"
     CDS             complement(1072..>2029)
                     /locus_tag="VGN19_09645"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEV7196193.1"
                     /translation="DLGQVGRQERHLEGDEEDDLGHYLPPLHPPDLVWTSIGYGAVLS
                     AVVAGILVAVAVAVAVVVVSDSSAVDAAMDNVIDKLGHVSVVVANAGIGAQQAPSGDC
                     TDEGWHRVINVNLDGVFYIQRAAIRAMKAGGRGGSVINMASILGFASSSAYAAAKHGV
                     VGLTQTAAWEHAADGIRVNAVGPGFIHTPLVEKRLTQRSCSSSSHSTRSNDSVRRRRS
                     PSWCPSRPATGPRSRRAPIPDRRWLRGPLESTPSPSAHLCTPQSPRGRDHETGRSADV
                     SALAGVAARLTVGWIVEATHLLAAVMAALAGVASAAIGSSYC"
BASE COUNT          328 a          706 c          664 g          331 t
ORIGIN      
        1 cacaaaccac cactcccctc tacaccagtg ccgatgtcga gtgtgtactc gagctggtgc
       61 ggtcggtgcc cttcaggact cctcaggcca ccgcggccgg agcgacggtc accctgcatc
      121 gcgcaggcca cgtccttggg tccgcctccg tgctcgtctc catcggcggt cgatccgtcc
      181 tgttctccgg ggatctgggc cgcccgcggc acccgctcct ccagccatgc gcggacccgc
      241 cacccgctca tgccgtggtg ctggaatcga cgtacggcaa ccgcatccac ccgcaactgg
      301 ccgggatgga tgagcacgag ccactagccg cagccatccg gaggacagtt ggtaggggcg
      361 ggtcggtgct gatcccggcc ttcgcggtcg atcgaacgga gctcgtgtta gttgccttgg
      421 ccaggctgac ggctcagcag cggatccctc gcgtaccaat tcacgtggac agcccgatgg
      481 ccctcgctgc tctggaggtt taccagcgtc cggacctggc ggcggagatg cggcccgagc
      541 ccctgcggga gctgttgtcc atgaccaacg ttcacgaggc gaaaactcca gacgagtcgc
      601 gtcggctgaa cacacctggc accccgtcga tcatcgtgtc cgcctcgggc atggccaccg
      661 gcggccgggt ggtccatcac ctgaagagcc tgctgccgca cgctaagaac acggtggtgc
      721 tgagcggcta tcaggccgtg ggtacccggg ggcggtcgct gcaggaaggt gctcgcgagg
      781 tcaagctctt gggtggttac gtccgggtca gagccgacgt ggtcgtggac gacacgttct
      841 cggtccacgc ggacgccgac gagctggtgt cctggctgga ccggctgccc cgcccaccgg
      901 aggtcgttta tctggtccac ggcgagcccg aggcacgcca ggccctcgct gagcgcgtcc
      961 gtgagtcaat cgactgcgcc gtagtccttc cgcgactcgg cgaacgggtc gtcgtataac
     1021 gacggtcttg cgttctctcg cccgcgccgc gctaggcacg acagctcacg gctagcagta
     1081 gctcgacccg atagcagcgg acgcaactcc cgctagggca gccatcaccg ctgcgagcag
     1141 gtgcgtcgcc tccacgatcc accccacggt caaccgcgcc gcgaccccgg ccaacgcgga
     1201 aacgtccgcc gaacgacccg tttcgtggtc ccgcccccgg ggtgactgag gagtgcacag
     1261 gtgtgcagat ggcgaaggcg tggactccag cgggccacgt aaccaccgtc gatcgggaat
     1321 gggcgcccgt cgcgaacgag gccccgtcgc tggccggcta gggcaccagc tcggcgacct
     1381 cctccgcctc accgagtcgt tggagcgcgt gctgtgactc gaggaactgc aggacctctg
     1441 ggtcagcctc ttctccacca gcggcgtgtg gatgaagccg ggtccgacgg cgttgacgcg
     1501 gatgccatcg gcagcgtgct cccacgcagc ggtctgggtc agccccacca cgccgtgctt
     1561 ggcggcggca taggcgctgg aacttgcgaa gccgaggatc gaggccatgt tgatgaccga
     1621 cccgccccgt ccaccggcct tcatcgcgcg gatcgcggcc cgttggatgt agaagacgcc
     1681 gtccaggttg acgttgatga cccggtgcca gccctcgtcg gtgcagtcgc cactgggagc
     1741 ttgctgtgca ccaatcccgg cgttggccac caccacgctg acgtgcccga gcttgtcgat
     1801 cacgttgtcc atggcggcat cgaccgcgga cgagtcactg acgacgacga cggcgacggc
     1861 gacggcgacg gcgaccagga tgccggccac caccgcggac aagactgccc catagccgat
     1921 cgacgtccaa accaagtctg gcgggtgcag cggtggaaga tagtggccta agtcgtcctc
     1981 ttcgtcgccc tcgaggtgac gttcctggcg gccaacctga ccaagatcg
//
LOCUS       DASYFY010000479         3146 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_770088, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000479 DASYFY010000000
VERSION     DASYFY010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_770088"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1353)
                     /locus_tag="VGN19_09650"
     CDS             complement(<1..1353)
                     /locus_tag="VGN19_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase HerA-like domain-containing protein"
                     /protein_id="HEV7196194.1"
                     /translation="MTESAKPQEPAQLDEIRSGYSFEGAALHFGATVIDGTAYPDAPV
                     RIPLSTMNRHGLVAGATGTGKTKTLQLMAEQLSGQGVPVFLADVKGDLSGLATAGQAN
                     DKIAARAKEVGQEWVGTAYPTEFLSLGGVGNGIAIRATVTSFGPTLLSKVLGLNETQE
                     SSLGLVFHYADKSGLALLDIKDLRAVIQHLTSDEGKEDLKELGGLSSATAGVILRELI
                     AFADQGAEAFFGEPEFDTQDLLRAAADGKGLVTCLELPAVQDRPALFSTFLMWLLADL
                     FHDLPEVGDADKPKLVFFFDEAHLLFKDASKAFQDAIEQTVRLIRSKGVGVFFVTQSP
                     KDVPGGVLAQLGNRVQHALRAYTPDDAKALKAAVSTYPHSGYNLEELLTLLGTGEAVV
                     TVLSDRGAPTPVAWTRMIAPQSLMAPTDDATVKQIMASSALASKYADVTDRESAYEKL
                     Q"
     gene            1441..1737
                     /locus_tag="VGN19_09655"
     CDS             1441..1737
                     /locus_tag="VGN19_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003949502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapB family
                     antitoxin"
                     /protein_id="HEV7196195.1"
                     /translation="MIFKKVGEGRPYPDHGKESPRDWADVPPRQVRLDELVTTKRTLD
                     LGHLLAEDSTFYGDLFAHVVEWEGTLYLEDGLHRALRAALQQRPTLHARVLVLD"
     gene            1781..2371
                     /locus_tag="VGN19_09660"
     CDS             1781..2371
                     /locus_tag="VGN19_09660"
                     /inference="COORDINATES: protein motif:HMM:NF024791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytR C-terminal domain-containing protein"
                     /protein_id="HEV7196196.1"
                     /translation="MSYTVETGASSAGRSRRRRSLITLALVALMLFFAFWYAYSYYRA
                     SGSPQASASTSTCTGTTTPVPSAITVNVYNATQREGLAARTAAEVRKRGFKVSSVAND
                     PLQHTVTGVAEVRYGRAATESSKLVLALVKGGKLVLDGRTDGTVDLVLGEKFKALSPV
                     VKAKPVAKPTARPTGTATTPARPAGRTTSPTPSRTC"
     gene            2478..2870
                     /locus_tag="VGN19_09665"
     CDS             2478..2870
                     /locus_tag="VGN19_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196197.1"
                     /translation="MISVDLARQLGQSGVLWEPTPGDRFTIDQPNVLGEVFWISHLTI
                     DVHTFHGTPLIGFNGTTEWALDAVTLDTALWLPREDQLRELLGDRFTALRTDDGQWLV
                     DIVSEEGHATFSDADAECAYALALLSLT"
     gene            2959..>3146
                     /locus_tag="VGN19_09670"
     CDS             2959..>3146
                     /locus_tag="VGN19_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016663956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7196198.1"
                     /translation="MDLLITGGAGFIGSTIASAALDAGHRPVILDSLVTGRREFTQGR
                     DFYEGDIADRELVDRILD"
BASE COUNT          496 a         1109 c         1063 g          478 t
ORIGIN      
        1 ctgcagcttc tcgtatgccg actcgcgatc cgtgacgtcc gcgtacttgg acgccagtgc
       61 cgacgacgcc atgatctgct tcacggtggc gtcgtcagtg ggagccatga gcgactgcgg
      121 cgcgatcatc cgggtccagg ccaccggcgt gggggcgccg cggtcggaca gcacggtcac
      181 gacggcctcg cccgtgccga gcaaggtgag gagctcttcg aggttgtacc cgctgtgggg
      241 ataggtcgag acggccgcct tgagggcctt cgcgtcgtcg ggcgtgtacg cccgcagcgc
      301 gtgctgcacc cggttgccca actgggccag aacgccacca ggcacgtcct tgggagactg
      361 cgtcacgaag aagactccca cgcccttgga tcggatcagt cgcaccgtct gctcgatggc
      421 gtcctggaac gccttcgatg cgtccttgaa cagcaggtgc gcctcgtcga agaagaacac
      481 cagcttgggc ttgtcggcgt cgccgacctc gggcaggtcg tggaacaggt cggccaacag
      541 ccacatgagg aacgtcgaga acagcgccgg cctgtcctgc accgccggga gctcgaggca
      601 ggtgaccagg cccttgccgt cggccgctgc gcgcaacagg tcctgggtgt cgaactccgg
      661 ctcgccgaag aaggcctcgg caccttggtc ggcgaacgcg atcagctcgc gcaggatcac
      721 cccggcagtc gccgacgaga gtcctccgag ctctttgagg tcctccttgc cctcgtccga
      781 ggtgaggtgc tggatcaccg cccggaggtc cttgatgtcg agcagtgcca agccgctctt
      841 gtcggcgtag tggaacacca gccccaggct ggactcctgg gtctcgttga gccccaagac
      901 ctttgacagg agcgtggggc cgaagctggt gaccgtggcc cggatcgcga tgccgttgcc
      961 gacgccgccg agagagagga actccgtcgg gtatgccgtg cccacccact cctgccccac
     1021 ctccttcgcg cgggcggcga tcttgtcgtt ggcctgcccg gcagtggcca gcccggacag
     1081 gtcgcccttg acgtcggcga ggaacaccgg cacgccctga ccggagagct gctcggccat
     1141 cagctgcaga gtcttggtct tgccggtgcc ggtcgctccc gccacgagcc cgtgccggtt
     1201 catcgtcgag agcgggatgc gcacgggtgc atcgggataa gccgtgccgt cgatgacggt
     1261 cgcaccgaag tgaagggcgg caccttcgaa cgagtacccc gaacggatct cgtcgagctg
     1321 ggcgggctcc tggggcttcg cgctctcggt cacgctgggc actctagtgc cgggaatcgc
     1381 gacccggcag gtgagacttc caggggtggc aggcgcgcgg cataccccta gggtggcggg
     1441 gtgatcttca agaaggtggg cgagggacgg ccgtatccgg accacggcaa ggagtccccg
     1501 cgggactggg cggacgtgcc gccgcgccag gtccggctcg acgagctcgt gaccacgaaa
     1561 cgcaccctcg acctcgggca cctgctggcc gaggactcca ccttctatgg cgacctcttc
     1621 gcgcacgtcg tggagtggga gggcacgctc tatctcgagg acgggctgca ccgggcactg
     1681 cgcgccgcgc tgcagcagcg acctacgctc cacgcccgag tgctcgtgct tgactaaggc
     1741 tcatcagatc cggggccgcg ggacggagcg gaggtgaggg gtgagctaca ccgtggagac
     1801 cggcgcgtcg agcgctggtc ggtcgcgacg gcggcgctcg ctcatcaccc ttgccctcgt
     1861 ggcgctgatg ctcttcttcg ccttctggta cgcctactcg tactaccgcg cctcgggctc
     1921 gccgcaggcc agcgcctcca cgtccacgtg caccgggacg acgacgcccg tgccttcggc
     1981 gatcacggtc aacgtctaca acgccaccca gcgtgagggg ctcgcggcca ggaccgcggc
     2041 cgaggtccgg aagcgaggct tcaaggtctc gtcagtggcc aacgaccccc tgcagcacac
     2101 ggtgacggga gtggccgagg tccgctacgg cagggcggcc accgagtcca gcaagctcgt
     2161 gctcgccctc gtcaagggcg gcaagctcgt cctcgacggg cgcaccgacg ggaccgtcga
     2221 cctcgtcctc ggtgagaagt tcaaggccct ctcgccggtg gtcaaggcga aacccgtcgc
     2281 caagcccacc gccagaccca cagggacggc gaccaccccc gcgcgccccg caggccgcac
     2341 gacctcgccc acgccgagca ggacgtgttg aacccctgga cccccgtccc ggtatgccgc
     2401 gtgcgtgccg tgaccgcgcg gcccacccgc ccggtgctca cctcacgccg cagcaggacg
     2461 cgacgtaggc tcgcgacatg atctcggtcg acctcgcccg gcagctgggc cagtcaggtg
     2521 tgctgtggga gccgaccccg ggtgaccggt tcaccatcga ccagccgaac gtcctcggcg
     2581 aggtgttctg gatcagccac ctgaccatcg acgtgcacac cttccacggg acgccactca
     2641 tcgggttcaa cggcacgacc gagtgggccc tcgatgcggt gaccctcgac acggccctgt
     2701 ggctgccgcg cgaggaccag ctgcgcgagc tgctcggcga ccggttcacc gcgctgcgga
     2761 ccgacgacgg ccagtggctg gtggacatcg tcagcgagga ggggcacgcc accttcagcg
     2821 acgcggacgc cgaatgcgcc tacgcgctgg ccctgctcag cctcacctga ccgacccgca
     2881 tccggcgcgt gcccgggcgg atcggtagat tcgctcctga agcaagcgca catctgcacc
     2941 gacagtgagg acgacagcgt ggacctgctc atcaccggcg gcgccggttt catcgggagc
     3001 accatcgcct cagcggccct cgacgccggc caccggccgg tcatcctcga cagcctggtc
     3061 accggccggc gtgagttcac gcaggggcgc gacttctacg agggcgacat cgccgaccgt
     3121 gagctggtcg accgcatcct cgacga
//
LOCUS       DASYFY010000480        13325 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1243718, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000480 DASYFY010000000
VERSION     DASYFY010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 13325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13325
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243718"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3147)
                     /locus_tag="VGN19_09675"
     CDS             complement(<1..3147)
                     /locus_tag="VGN19_09675"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEV7196199.1"
                     /translation="MTDTGKSLSAKDIAAQLGLPEPTPQQVAVIESPMAPLLVVAGAG
                     SGKTETMTSRVVWLVANGFVEPDQVLGLTFTRKAATELSERIGSRLRLLQHCGLWQPP
                     TDDGETGAEVLGGTPTVSTYHSYAGRLVREHALRLGYESESRLLSEAAAWQYASEVVQ
                     GYDGPMDDVPFAESTVTAAVVDLAGEMSEHLVAPGDVAAYLDEVLHALAALSPGSSRG
                     KDLPGEVKKMREQLRARAGVLPMVERYLNLKRARDAMDFADQMALAARLAMTFPDIGA
                     IERQRFGAVLLDEFQDTSAAQLELLRSLFAAPGEPSPVTAVGDPNQSIYGWRGASATT
                     LSAFRTAFRVGPDPVPVRPLATSWRNDVAVLDVANAVAVPLRERSRVPVAALAARPAA
                     SPGRVCAARVLTAPEEAALVADWLSERRRSGAKSAAVLCRKRSQFAPIIDALESRNLP
                     YEVVGLGGLLLTPEVEDITALLHVVHDPARGDQLMRLLTGPLCRLGAADLDGLMAWAR
                     HQQELRLQAAAQSHSVRDQAPDSSDRVSIVEAVDDLPRPGWLGRDGQGLSDVALGRLG
                     ELRRVIRRLRALTALPLADLVGEAERALGLDIEVLAREGYTPAAARAHLDAFADVAAS
                     FTVSADRPNLGGFLAWLAAALKEERGLDKGYIEASTDAIQVLTIHAAKGLEWDAVAVP
                     GLVEGSFPALSSAASRSDGHEWLVSSPKSRGWIGGLTDGGIPYELRGDREGLPLLDWR
                     AATEWKDMDKRVTDFLHAGGEHGVEEERRLAYVAFTRARSDMLLTAPVWTDGKTPKVT
                     SRFLMEVVHGDASLPVTTLDWAPMPDPASDEEALNPATAHTISVQWPADPLADRRAAL
                     AQGAAAVRTAIEDYAENPAPEDDSHQAVLPLRGQELPIMEELALLLEERRRQAHRTQE
                     TVLLPRHLSASAVVALAQDPAQFASRLRRPMPEAPALAARRGTAFHAWVEQHFARAAM
                     VDVLDLPGSADEDPGDDEALPAMKELFLASEWAHRTPAEIELALETVIDGIAVRGRID
                     AVFRRPGGGYTIVDWKTGS"
     gene            complement(3147..6299)
                     /locus_tag="VGN19_09680"
     CDS             complement(3147..6299)
                     /locus_tag="VGN19_09680"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEV7196200.1"
                     /translation="MLTLRRAPSVVAEAPVLDEVQQAVLDHRGGLLRVLGAPGTGKTT
                     TVVELLAARVQTGAATPDQCLVLASSRLAAASLRERVTARLGRTSTEPLARTLQAFGF
                     GILRQAAALRGDPAPRLLSGPEQDVILRDLLAGHLAEATGPAWPDRLALALPTRGFRN
                     ELRDLLMRAVEHDLEPDDLVRLGREHDRPEWVAAAGVLAEYDEVTALSAPGAYDPAWI
                     LGAAADLLDEEPEVLQRLRAGSRLLVVDDAQELTSAAARLLRTVAGVGPGLDLVLFGD
                     PDSAVQTFRGADPRFLATGWTALGEGPTLVLPTAYRLPHAIHQAAGRVAPKIGALGGG
                     AQRQTTPGRPGGEVEVRLLRAVSQEASLVAAELRESHLRHGVPWSEMAVIVRGQGRTA
                     TLRRVLMATGVPVAGSATDLPVRDEVAVRPLLALLGVVLERAKGDEAALTPQLAVDAL
                     LSPLGGADAVALRRLRRALRRLELQSGGGRPSDELLAEALLAPGALIELGPEANAARR
                     VAATIVAGLGAARGARDGESWRWDPGVSAESILWAMWSATRLGPEWQAASLSGGPGAA
                     RADRDLDAVVGLFDAAAKFVDRLPHAGPEEFLTHIASQDIPGDTLVARAPVGESVTVT
                     TPQAAAGREWRLVVVAGVQEGVWPDLRLRGSLLGSEQLVDVVSGRSTTFRAAQAAVRY
                     DETRLLLVALTRATERVLVTAVRSDDEQPSVYLDVIDPETITVHGDRPFAEVARTMTL
                     PTLVGELRRQLMAPERSRRATAVAALARLAHEGVAGADPQQWWVMRSVSDDRPLRAAE
                     QEVRVSPSKVESFGNCGLRWLLSSVGGDGLSVGAADIGTLVHDIAAELGDVDAATLVA
                     EIDARWGRLGLPAGWVSDRKRLEAHSMVRRLATYFEEAAAQGWVRLGAELNMRVALGR
                     VVLSGNVDRLEATPDGSALRVVDYKTGSSKPKGDDLARHPQLGAYQLGVEHGAFADHG
                     STSAGAALLHVGKAALVKTTLQTQPPLHEDDEPSWALDLVTSTADGMAASRFMATIGD
                     WCTMCAVKASCPAQPEGRVL"
     gene            complement(6370..6726)
                     /locus_tag="VGN19_09685"
     CDS             complement(6370..6726)
                     /locus_tag="VGN19_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017888145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEV7196201.1"
                     /translation="MVTQAGDFGLPSEFADDVLEVVDQIPEGMVMTYGDIAELLGRGG
                     PRGVGTVMARYGSDVPWWRVIRAGGHFPQGLEVEALAHYREEGTPLVRGQLVGRRVDL
                     TRARWAGPARSAGSVN"
     gene            complement(6763..7992)
                     /gene="moeB"
                     /locus_tag="VGN19_09690"
     CDS             complement(6763..7992)
                     /gene="moeB"
                     /locus_tag="VGN19_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HEV7196202.1"
                     /translation="MAIPPLVSPGPELSTEQKARYARHILLPQVGLEGQRRLANARVL
                     VVGAGGLGSPALLYLAAAGVGTIGVVDDDVVDASNLQRQIVHGVADVGRLKTESAAET
                     VASINPLVTVVRHDLRLTSENALEIFADYDVVLDGADNFATRYLVNDACVLLGLPHVW
                     GSIYRFDGQVSVWFAGYGPCYRCVFPEPPPPDAVPSCATGGVLGVLCAAIGSVQVAEA
                     VKLIVGAGEPLVGRLLVHDALRQTWDSLTVRADPACPVCGESPTVTSLVDYDDFCGMP
                     GASVERSAAGERVSGVAEGVSGVAEVTAAQLASMLQARERGEADFELVDVREPGERDV
                     VSIPGARPIHLDEFRTGAAARQLADGIPVVVHCKSGSRSAEAAALLVASGRPDVSNLA
                     GGVLAWVRDVDPSLPTY"
     gene            8062..8709
                     /locus_tag="VGN19_09695"
     CDS             8062..8709
                     /locus_tag="VGN19_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7196203.1"
                     /translation="MALRTADTTTDGRQAGQRMPRSARRAQLLEAAQAAFVESGYHAA
                     AMDDIAERAGVSKPVLYQHFPGKLELYLALLDKHSEGLEQLVREALASTHDNKERVYA
                     AINAYFDFVSRDGAAFRLIFESDLTNESAVRNRLDAVGLVCAEAVAEVIAEDTGLTDE
                     DASLLGMALTGLAQVSARHWLAQGSVVPKDEAARLVGALAWRGLGSFPKVGGEGS"
     gene            8789..9013
                     /locus_tag="VGN19_09700"
     CDS             8789..9013
                     /locus_tag="VGN19_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012244637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3107 domain-containing protein"
                     /protein_id="HEV7196204.1"
                     /translation="MEVKIGVQNVAREITFETDLSADAVAKAVRAAVENGTALELTGE
                     KGRQLLVPAGVLGYVQLGESEKRGVGFGNP"
     gene            complement(9041..9733)
                     /locus_tag="VGN19_09705"
     CDS             complement(9041..9733)
                     /locus_tag="VGN19_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like fold-containing protein"
                     /protein_id="HEV7196205.1"
                     /translation="MTQDDWLTDPQYRAAVADLLGVLAYGELTAFTRLAGDSELSPSQ
                     PLKASVAGLAVAEFRHYEILVARLAEMDIDPEEAMAPFIAAIDAFHERTKPSTWLEGL
                     VKAYVGDGIATDFYREIAAYVDPSTQALVHSAMEDVGQAEFVVKVVREAIKEDHRIAG
                     RLALWGRRLVGEALSQAQQVAVERDALASLLVGGVGGSDRPTADLAELGRMFARLTDE
                     HTRRMGRLGLAA"
     gene            10087..11583
                     /locus_tag="VGN19_09710"
     CDS             10087..11583
                     /locus_tag="VGN19_09710"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEV7196206.1"
                     /translation="MPTFADFDVHPDIVASLADAGIITPFPIQAMTLPVALAGHDIIG
                     QAKTGTGKTLGFGVPMLNRSVARGDAAWDTLPYAGKPQALAVAPTRELAVQVSSDLER
                     AGKRRGLRVLTVYGGRAYEPQIDALVKGVEIVVGTPGRLIDLAKQGHLDLSHVKSVVL
                     DEADEMLDLGFLPDVEKLLAMTPGSRQTMLFSATMPGAVVALARRYMSQPTHIRAMGD
                     DQENAHTVKAVEQFVYRAHAMDKVEMLARMLQAKDRGLTIIFSRTKRTAAKVADDLSD
                     RGFAAAAIHGDLGQGAREQALRAFRNGKVDILVATDVAARGIDVDNVTHVINYQCPED
                     EKTYLHRIGRTARAGNTGIAVTFVDWDDLPRWGLINKTLDLGIPEPEETYSSSDHFYE
                     QLNIPREAKGRLPKAAQTRAGLGAEAVEDLGETGKSGGRRPAGGQGGGQGGSRGGARS
                     SDRPRDAGRDGDRDRRPKADAAEGSTAPRRDRSRRRTRGGKPAGDSQA"
     gene            complement(11593..12144)
                     /locus_tag="VGN19_09715"
     CDS             complement(11593..12144)
                     /locus_tag="VGN19_09715"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196207.1"
                     /translation="MEPSAEVTFRRVERADFPRLARWLATVPVARWWNHEWTAQAVER
                     DFGPTADGLEPGEDWLALLDGVPVGLVQRLLVAAYAENLADFAQLTPVPEGAVTLDYL
                     LGDPHTHGQGLGTAMIVAMVERTWLDLPTAPAILVSVVAANVASWRALEKAGFRRVAE
                     GDLTPDNPVDDPLHYVLRVDRPG"
     gene            complement(12152..12934)
                     /locus_tag="VGN19_09720"
     CDS             complement(12152..12934)
                     /locus_tag="VGN19_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEV7196208.1"
                     /translation="MARTTTPKQATVVSVANQKGGVAKTTSVASLGAAFAEQGKRVLL
                     VDLDAQACLTFSLGVNPDEVDASINEVLLGRASIADVRVACDDGVDLVPSVIDLAGAE
                     AQLLPRPGREYILRTVLDEVRGEYDVIMLDCSPSLGVLTLNALTASQGLIIPMPCEML
                     SHRGVGQLLDTVADVQKILNKDLRVLGILPTLFDGRSNHAQEVLADVGERYGLPVLEP
                     PIPKTVRFAEAPAVGRSILSTSRTSKGAKAYRDVAAALAAQF"
     gene            complement(12976..>13325)
                     /locus_tag="VGN19_09725"
     CDS             complement(12976..>13325)
                     /locus_tag="VGN19_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196209.1"
                     /translation="ALYAAAVWKMFRRRCVQVELHHVPTGTVAVHEHTGESLQRKIAE
                     AESIARDARRAEEDYAEHGVDSGRFPAAVGPLCQWCDFRSHCPEGQAVGAEKSGWAAL
                     ETPVVIAHGDLKD"
BASE COUNT         2067 a         4884 c         4591 g         1783 t
ORIGIN      
        1 ggaacccgtc ttccagtcga cgatcgtgta gccgccgccc gggcgccgga acacggcgtc
       61 gatcctgccc cgcaccgcga tcccgtcgat caccgtctcg agtgcgagct cgatctccgc
      121 cggggtccgg tgggcccact cgctggcgag gaagagctcc ttcatggctg gcagggcttc
      181 gtcgtcacct gggtcctcgt cggcactacc gggcagatcc aggacatcaa ccattgcggc
      241 gcgggcgaag tgctgctcga cccaggcgtg gaaggcggta ccgcgtctcg ccgcaagggc
      301 aggcgcctcc ggcatcggcc gtcgaagccg agaggcgaac tgggccggat cctgggccag
      361 ggcgaccacg gccgatgccg agaggtgtcg tggcagcagc accgtctcct gggtgcggtg
      421 agcttggcgt cgtcgctcct ccagcaacaa tgccagctcc tccatgatcg gcagctcttg
      481 gccgcgcagc gggagtaccg cttggtggct gtcgtcctcg ggggcggggt tctcggcata
      541 gtcctcgatg gccgtcctga ccgccgcggc cccttgggcg agggcggcgc gccggtcggc
      601 cagggggtcg gccggccact gcacagagat cgtgtgggcc gtcgcgggat tcagggcttc
      661 ctcgtcggag gctggatcag gcatgggcgc ccagtcgagg gtggtgacgg gcagagacgc
      721 gtcaccgtgg accacctcca tgaggaatcg cgaggtgacc ttgggggtct tcccgtcggt
      781 ccacaccggg gccgtcagca gcatgtccga ccgggcccgg gtgaaggcca cgtaggccag
      841 gcgtcgctcc tcctcgaccc cgtgttcacc tccagcgtgc aggaagtccg tgacgcgctt
      901 gtccatgtcc ttccactcgg tggccgctcg ccagtccagc agcgggagcc cctcgcggtc
      961 gcctcgaagc tcgtacggaa tcccgccgtc cgtgaggccg cctatccagc ctcgagactt
     1021 cggtgaggac accagccact cgtgaccgtc cgaccggctc gcggccgacg acaaggctgg
     1081 gaaggacccc tccacgaggc cgggaaccgc gacggcatcc cactccaagc ccttcgcggc
     1141 atggatcgtg aggacctgga tcgcgtccgt ggaggcttcg atgtagccct tgtccagccc
     1201 ccgctcctcc ttcagcgcag cagcgagcca cgccaggaac ccgccgaggt tcggccggtc
     1261 agcgctgacc gtgaagcttg ccgccacgtc ggcaaaggcg tcgaggtggg ctcgtgccgc
     1321 agccggggtg tagccctcgc gagcgagcac ctcgatgtcg agccccaagg cacgctcggc
     1381 ctcgccgacc aggtcagcca acgggagcgc ggtcagcgcg cgcagcctcc tgatcactcg
     1441 gcgcagctcg ccgaggcggc ctaacgccac gtcgctgaga ccttgcccgt ccctgccgag
     1501 ccaccccggg cgcggcaggt cgtccaccgc ctcgacgatg ctcacgcggt ccgagctgtc
     1561 cggggcctgg tcccgaaccg agtgggactg cgccgccgcc tggagtcgca gctcctgctg
     1621 gtggcgcgcc cacgccatca gtccgtcgag gtctgccgcg cccagtcggc agagcggacc
     1681 cgtcaacaac ctcatgagct ggtcgccgcg ggctgggtcg tggaccacgt gcaacagggc
     1741 ggtgatgtct tcgacctcgg gggtgagcag gaggccgccg aggccaacca cctcgtaggg
     1801 gaggttgcgt gactccaggg cgtcgatgat gggcgcgaac tgtgaccgct tgcggcagag
     1861 caccgcggcg gacttcgcac cggaacgtcg gcgctcgctc agccagtcgg cgacgagggc
     1921 cgcctcctcc ggcgcggtga ggacccgggc tgcacagacg cgcccgggag acgccgccgg
     1981 ccgagccgcc agcgcggcca cgggaacccg cgagcgctct cggagcggca ccgcgacggc
     2041 gttggccacg tcgaggacgg cgacgtcgtt gcgccagctg gtggccagcg ggcggacggg
     2101 taccggatcg ggaccgacac gaaaggcggt ccggaaggcg ctcaacgtgg tggcactggc
     2161 ccctcgccag ccgtagatcg actggttggg gtcgccgacg gcggtgaccg gagacggctc
     2221 gccgggcgcg gcgaacagcg agcgcaacag ctcgagctgg gcggcggagg tgtcctggaa
     2281 ctcatcgagc agcaccgcac cgaaccgctg ccgctcgatg gcgccgatgt cggggaaggt
     2341 catcgccaag cgtgccgcca acgccatctg gtcggcgaag tccatcgcat cgcgagcccg
     2401 cttgaggttg aggtagcgct cgaccatggg caggacgcca gcgcgagcgc ggagctgctc
     2461 gcgcatcttc ttcacctctc ccgggaggtc cttgccccgg ctggaccccg gggaaagcgc
     2521 ggccagtgcg tgcaggacct cgtcgaggta ggccgcgacg tcgccggggg cgaccaggtg
     2581 ctcggacatc tcgcccgcga ggtcgaccac cgcggccgtg acggtgctct cggcgaacgg
     2641 gacgtcgtcc atcggcccgt cgtagccctg gacgacctcc gaggcgtact gccaggccgc
     2701 ggcctcggac agcaggcggg actcggactc gtagcccaaa cggagggcat gctcgcggac
     2761 gagccggccg gcatacgagt ggtaggtcga caccgtcggg gtgccgccga gaacctcggc
     2821 ccccgtctcg ccatcgtcgg tgggcggttg ccacagaccg cagtgctgca gcaggcgcag
     2881 gcggctgccg atccgctccg acagctcggt ggccgccttg cgagtgaagg tgagaccgag
     2941 cacctggtcg ggctcgacga aaccattggc gaccagccac acgactcggc tggtcatggt
     3001 ctcggtcttg ccggagccgg cacctgcgac caccaggagc ggcgccatgg gcgactcgat
     3061 cacggcgacc tgctgggggg tgggctcggg aagcccgagc tgcgcggcaa tgtccttggc
     3121 gctcagcgac tttccggtgt cggtcatcag agcacgcgcc cctcgggctg agccgggcag
     3181 gatgccttga ccgcacacat cgtgcaccag tcgccgatgg tggccatgaa cctggaggcg
     3241 gccatcccgt ccgcggtcga ggtaaccagg tccagcgccc aggacggctc gtcgtcctcg
     3301 tgcaagggag gctgggtctg cagggtggtc ttgaccagcg ccgccttgcc gacatgcaga
     3361 agggccgcac cggccgacgt cgacccatgg tccgcgaagg cgccgtgctc gacccccagc
     3421 tggtaggcac cgagctgagg gtgtcgggcg aggtcgtcgc ccttgggctt ggagctaccc
     3481 gtcttgtagt ccacaacccg cagggccgag ccgtccggcg tcgcctcgag gcggtcgacg
     3541 ttgccgctga gcaccacccg gcccaaggcc actctcatgt tcagctccgc ccccagccgg
     3601 acccagccct gcgcggcggc ctcctcgaag tacgtcgcca gccgccgaac catggaatgc
     3661 gcctcgagcc tcttgcggtc cgacacccac cccgccggca gccccagccg gccccatcgc
     3721 gcgtcgatct cggccaccaa cgtcgccgcg tcgacatccc cgagctctgc ggcaatgtcg
     3781 tgcaccagcg tgccgatgtc ggcggccccg accgaaaggc cgtccccgcc gacggagctc
     3841 agcagccagc gcagtccgca gttgccgaac gactccacct tgctcggcga gacgcgcacc
     3901 tcctgctcgg ccgcacgcag cggtcggtcg tcggacaccg agcgcatgac ccaccactgc
     3961 tgcgggtcgg cgcctgcaac cccctcgtgg gcgagccggg ccagcgcggc cacagcggtc
     4021 gcgcgacgcg agcgctcagg ggccatcagc tgtcggcgca gctcccccac cagggtgggc
     4081 agcgtcatcg ttcgggcgac ctccgcgaac gggcggtcgc cgtgcaccgt gatcgtctcg
     4141 gggtcgatga cgtcgagata caccgaaggc tgctcgtcgt cgctgcgcac cgctgtcacc
     4201 agcacccgtt cggtggccct ggtcaacgcc acgagaagca gcctggtctc gtcataacgg
     4261 accgccgcct gagccgcgcg gaaggtcgtg gacctccccg acacgacgtc gaccagctgc
     4321 tcggacccca gcagcgagcc acgcagccgc aggtccggcc agaccccctc ctggacgccc
     4381 gcaaccacga ccagccgcca ctcccggcca gccgcagcct gcggagtggt caccgtgacc
     4441 gactctccaa cgggcgccct ggccacgagc gtgtcgccgg ggatgtcctg gctggcgatg
     4501 tgggtcagga actcctccgg gccggcatgg gggagccggt cgacgaactt ggcggcagcg
     4561 tcgaagagcc ccaccacggc atccaggtcg cggtcggcgc gagcagcccc cggaccgccc
     4621 gacagcgaag ccgcctgcca ctccgggccc agcctcgtgg ccgaccacat ggcccacagg
     4681 atcgactccg cgctgacacc cggatcccag cgccagctct caccgtcacg cgcaccgcgg
     4741 gcggcaccca gccccgcgac gatggtggcc gcgacgcgac gcgcggcatt ggcctcgggg
     4801 cccagctcga tcagggcgcc gggcgcgagc agcgcctcag cgaggagctc atcgctgggg
     4861 cgcccaccac cactctggag ctcgagtcgc cgcagggccc gccgaagtcg ccgcagcgcg
     4921 accgcatcgg ccccgcccag cggggagagc agggcgtcga ccgccagctg cggcgtcagc
     4981 gcagcctcat cccccttcgc gcgctcgagg accacgccca acaaagccag cagtgggcgg
     5041 accgcgacct cgtcgcgcac cggcaggtcg gtcgcgctgc cagccacggg gacccccgtg
     5101 gccatcagga cgcggcgcaa cgtcgcggtt cgcccctgcc cgcgcacgat caccgccatc
     5161 tccgaccagg gcaccccgtg gcgcaggtgg gattcccgga gctcggccgc gacgaggctg
     5221 gcctcctggc tcaccgcgcg gagcaggcgg acctcgacct cgcccccggg tcggccgggg
     5281 gtggtctgcc gttgcgcgcc gccgccgagt gcgccgatct tgggggccac tcgtccggca
     5341 gcctggtgga tcgcgtgcgg cagccggtat gccgtgggca acacgagcgt cggaccctcg
     5401 ccgagcgcgg tccaccccgt ggccaagaac cgaggatccg cacctcggaa cgtctgcacg
     5461 gccgagtcgg gatcgccgaa cagcaccagg tcgaggccgg gcccgacgcc cgcgacggtg
     5521 cgcagaagtc gtgccgcggc agaagtgagc tcttgggcgt cgtcgaccac gaggagacgc
     5581 gacccggccc gaagtcgttg gagcacctcg ggctcctcgt cgagcaggtc ggcggccgcg
     5641 ccgaggatcc aggccgggtc ataggcgcct ggagcggaca gcgctgtcac ctcgtcgtac
     5701 tcggcgagga cccccgccgc ggcgacccac tcgggacggt cgtgctcccg ccccagccgg
     5761 accaggtcgt cgggttcgag atcgtgctcc acggcccgca tcaacaggtc gcgcagctcg
     5821 ttgcggaatc cccgggtcgg caaggcaagg gcaagccggt ccggccatgc ggggccggtc
     5881 gcctccgcca ggtgaccggc gagcagatcg cgcaggatga cgtcctgctc gggtccgctc
     5941 agcagccgag gtgccgggtc gccgcgcagg gcggcggcct gccgcagaat gccgaacccg
     6001 aaggcctgga gggtcctggc caggggctcg gtcgaggtcc ggccgagccg cgccgtcacc
     6061 cgctcgcgca ggctcgcggc ggccagtcgg gacgacgcca ggaccaggca ctggtcggga
     6121 gtcgctgcac cggtctgcac ccgcgccgcc agcagctcga ccacggttgt cgtcttgccg
     6181 gtgccaggag cgcccagaac gcgcagcaga ccgccgcggt ggtcgaggac cgcctgctgc
     6241 acctcgtcca gcaccggggc ctcggccacc acgctagggg cgcggcgcaa ggtcaacacg
     6301 gccctgattc catcaccctg gtccgacatc ggtgcccgca ccccgccgtc gcgcggccgg
     6361 tcatccggct cagttcaccg aacctgcgga tcgggcgggc ccggcccagc gagcccgggt
     6421 caggtccacg cgccgcccaa ccagctgccc gcgcaccagc ggcgtgccct cttcgcggta
     6481 gtgcgccagc gcctcgacct ccagtccctg gggaaagtgc ccaccggccc ggatcacccg
     6541 ccaccacggc acgtccgacc cgtacctggc catgacggtg cccacgcctc gcggtccccc
     6601 gcgtcccagg agctcggcga tgtcgccgta cgtcatgacc atgccctcgg ggatctggtc
     6661 gacgacctcg agcacgtcgt ccgcgaactc gctcggcagc ccgaagtcac ccgcctgcgt
     6721 caccaccggc acacctcagt cctcatcaca cctcagtact cgtcaataag tcggaaggct
     6781 gggatcgaca tcacgaaccc aggccaacac tccgccggcc aggttcgaca cgtccggacg
     6841 tcccgaagcc accaggagtg cggccgcctc ggcggaacgc gacccggact tgcaatgcac
     6901 cacgaccggt atgccgtccg ccagctggcg cgccgcggct ccggtgcgga actcgtccag
     6961 gtggatcggg cgcgcgccgg ggatcgagac gacgtcgcgc tcaccgggct cgcggacgtc
     7021 gaccagctcg aagtcggcct cgccgcgctc gcgcgcctgg agcatcgacg caagctgtgc
     7081 ggcggtcacc tcggcaaccc cggacacgcc ctcggcaacc ccggacactc gctcgccggc
     7141 ggccgaccgc tcaacggaag cacccggcat accgcagaag tcgtcgtagt ccaccaacga
     7201 ggtgaccgtg ggcgactccc cacacaccgg gcaggcaggg tcggcgcgca cggtcagcga
     7261 gtcccaggtc tggcgcagcg cgtcatgcac gagcagccgc cccaccagag gttcacccgc
     7321 gcccacgatg agcttgaccg cctcggcgac ctgcaccgaa ccgatggccg cgcagagcac
     7381 cccgagcacc ccgccggtcg cgcaggaggg caccgcatcg gggggtggcg gttcgggaaa
     7441 cacgcaccgg taacaggggc cgtagcccgc gaaccacacc gacacctggc catcgaaccg
     7501 gtagatcgac ccccacacat gcggcagtcc cagcagcacg caggcgtcgt tgaccaggta
     7561 gcgggtggcg aagttgtcgg cgccgtcgag cacgacgtcg tagtccgcaa agatctccag
     7621 ggcattttcc gaggtcagcc gcaggtcatg gcggaccacg gtgaccagcg ggttgatgga
     7681 ggccaccgtc tcggccgccg actcggtctt gagccggccc acgtccgcga caccatggac
     7741 gatctgacgc tggaggttgg acgcatccac cacgtcgtcg tcgaccacgc cgatcgtccc
     7801 gacccccgcg gcagccaggt acagcagtgc cggcgagccc agaccacctg cgccgaccac
     7861 caggacccgg gcgttcgcca gccggcgctg cccctccagc ccgacctggg gcaacaggat
     7921 gtggcgggcg tagcgcgcct tctgctcggt gctgagctcg ggacctggcg ataccagcgg
     7981 cgggatggcc atgtgagcca cgttacccac ccgtacgatg ggcccgacac cgcagtcagg
     8041 ccgacccgat agagaggccc catggcgctc cgcaccgcag acacgaccac cgacggcaga
     8101 caggccggtc agcgcatgcc gcgctcggcc cgtcgcgccc agcttctgga ggctgcgcag
     8161 gcggcattcg tggagtccgg ctaccacgct gccgccatgg acgacatcgc cgaacgggcc
     8221 ggggtctcca aacccgtgct gtaccagcac ttcccaggca agctggagct gtatctcgcg
     8281 ctcctcgaca agcacagcga gggcctcgaa cagctggtcc gtgaggcctt ggcctcgacg
     8341 cacgacaaca aggagcgggt ctacgcggcg atcaacgcgt acttcgactt cgtgtcgcgc
     8401 gacggcgccg cgttccggct catcttcgag tccgacctca cgaacgagtc cgccgtgcgg
     8461 aaccggctcg atgctgtggg cctggtgtgt gccgaggccg tggccgaggt catcgccgag
     8521 gacaccggcc tcaccgacga ggacgcctca ctgctgggca tggccctgac cggtctcgct
     8581 caggtgagcg cccggcactg gctggcccaa ggctcggtgg tacccaagga cgaggcggcc
     8641 cggctcgtcg gggcgctggc ctggcgcggc ctcggctcgt tccccaaggt gggcggggaa
     8701 ggttcctgac gacctgctcg ttagcctgac tgcgagacac ccgcacgcgc cggtatgccg
     8761 cgtgctccct gaactgaaag gaaccatcgt ggaggtcaag atcggcgtgc agaacgtcgc
     8821 tcgggagatc acgttcgaga ccgacctcag cgccgacgcg gtcgccaagg ccgtgcgtgc
     8881 cgcggtcgag aacggcaccg ccctggagct caccggagag aagggccgcc agctcttggt
     8941 ccctgccggt gtcctgggct acgtgcagct cggcgagtcg gagaagcgcg gcgtcggctt
     9001 cggcaacccc tgaccgcctt acctgaccgt ctcaggccgc tcaggcggcc aggcccagac
     9061 gccccatccg acgggtgtgc tcgtcggtga gtcgggcgaa catccgtccg agctcggcga
     9121 ggtcggcagt cggtctgtct gagccgccca ctccgccgac cagcaacgag gccaaggcgt
     9181 cgcgctccac ggcgacctgc tgggcctggg acagcgcctc gcccaccagc cggcgccccc
     9241 agagggccag ccggccggcg atgcggtggt cctccttgat cgcctcgcgc accaccttga
     9301 cgacgaactc ggcctggccc acgtcctcca tggccgagtg gacgagagcc tgcgtcgagg
     9361 ggtcgacgta cgccgcgatc tcgcgataga agtccgtggc gatgccgtcg ccgacatagg
     9421 ccttgaccag gccctcgagc cacgtgctgg gtttggtccg ttcgtggaag gcgtcgatcg
     9481 cagcgatgaa cggcgccatc gcctcttccg ggtcgatgtc catctcagcg agtcgcgcca
     9541 cgagaatctc gtagtgccgg aactcggcca cggcgagccc tgcgacggac gctttgagag
     9601 gctggctggg cgacagctcg gagtcaccgg ccagccgggt gaaggccgtg agctcgccgt
     9661 aggccaggac gccgagtagg tcggcgacgg ccgctcggta ctgcggatcg gtcagccagt
     9721 cgtcctgcgt catggcagtc agcctataag cgcggctcgc agggctgccg cgacggcgtg
     9781 agtactgcgc tgcggcgcgc cggcggggcg gcgtgaggac tgcgcggcgg cggggcgtcg
     9841 cggcgtcggc agatgcgggt ggagttggcg tcgcccgcta gacttggggg gtcaaaggtg
     9901 cccggtcggc acgattacgc cgcggagctg ctccgcgccc cctcacgaaa acctccgatc
     9961 ggcccgctat gcgacggctt ccgcccagcg ggacgccccg atcgagagaa ctccatgact
    10021 gagaccaccg cgtcctccga cgcgaccgat gccaccacgc ccccgacggc ccccgcggcg
    10081 cccccgatgc ccaccttcgc cgacttcgac gtccaccccg acatcgtggc gtccctggcc
    10141 gacgcaggca tcatcacccc gttcccgatc caggccatga ctctgcccgt ggccctcgcc
    10201 ggccacgaca tcatcggcca ggccaagacc ggcaccggca agaccctggg gttcggcgtg
    10261 ccgatgctga accggtccgt cgcccgaggc gacgcggcct gggacaccct cccgtatgcc
    10321 ggcaagcccc aggcgctggc cgtggccccc acccgtgagc tggccgttca ggtgtccagt
    10381 gacctcgagc gggccggcaa gcgccgcggc ctccgggtgc tcaccgtcta cggtggccgc
    10441 gcctacgagc cgcagatcga cgcgctggtc aagggtgtcg agatcgtcgt cggcacgcca
    10501 gggcgactca tcgacctggc caagcagggt cacctcgacc tctcgcatgt gaagtcggtc
    10561 gttctcgacg aggcagacga gatgctcgac ctggggttcc tgcccgacgt cgagaagctc
    10621 ctggcgatga cgccgggttc gcgccagacc atgctgttct cggcgacgat gccgggtgcc
    10681 gtggtggcac tggcccgccg ctacatgagc cagccgacgc acatccgggc gatgggcgac
    10741 gaccaggaga acgcccacac ggtcaaggcc gtggagcagt tcgtctaccg ggcgcacgcc
    10801 atggacaagg tcgagatgct ggcgcgcatg ctgcaggcca aggaccgtgg cctgacgatc
    10861 atcttcagcc ggaccaagcg gaccgcagcc aaggtcgccg acgacctcag tgaccgcggg
    10921 ttcgccgcgg ccgccatcca cggcgacctg ggccaggggg cgcgtgagca ggcgctgagg
    10981 gcgttccgca acggcaaggt ggacatcctc gtcgccaccg acgtggcggc ccgcggcatc
    11041 gacgtcgaca acgtcaccca cgtcatcaac taccagtgcc ccgaggacga gaagacctat
    11101 ctgcaccgca tcggccgcac ggcgcgcgcg ggcaacaccg gcatcgccgt cacgttcgtc
    11161 gactgggacg acctgccacg gtggggcctg atcaacaaga ccctcgacct cggcatcccg
    11221 gagccagagg agacgtactc ctcctccgac cacttctacg agcagctcaa catcccccgc
    11281 gaggccaagg gccggctccc caaggcggcg cagacccgcg cgggcctcgg ggccgaagcg
    11341 gtcgaggacc tcggcgagac gggcaagtcc ggcggacggc gccccgccgg tggccagggc
    11401 ggtggccagg gcggtagccg tggtggggcc cggagcagtg accgcccacg cgatgccggc
    11461 cgcgacggtg accgagaccg gcggcccaag gcggacgctg ctgaaggctc gaccgcgcct
    11521 cggcgggacc gtagtcgccg tcgcactcgc ggtggcaagc cagccgggga ctctcaggcc
    11581 tgacggggtt cgtcagcccg gtcggtcgac ccgcagcacg tagtgcagtg ggtcgtcgac
    11641 cgggttgtcc ggcgtgaggt caccctcggc gacgcgtcga aagccggcct tctccaacgc
    11701 acgccacgac gccacgttgg cggccacgac cgagaccagg atcgcggggg ccgtcggcag
    11761 gtcgagccag gtccgctcga ccatggcgac gatcatcgcc gtgcccagac cctggccgtg
    11821 ggtgtggggg tcgccgagca ggtagtccag cgtcaccgcc ccctcgggga ccggggtgag
    11881 ctgggcgaag tcggcgagat tctcggcata cgcggccacc aacaaccgct gcactagccc
    11941 gaccggcaca ccgtcgagca gcgccagcca gtcctcgccg ggctccagcc cgtctgcggt
    12001 cggcccgaag tcccgctcca ccgcctgcgc ggtccactcg tggttccacc accgagccac
    12061 cgggacagtg gccaaccagc gagccagccg ggggaagtcc gcgcgctcca cccgccgaaa
    12121 cgtcacctcg gcggacggct ccatggtccg ttcagaactg ggccgcgagc gccgcggcga
    12181 cgtcccggta ggccttggct cccttggacg tccgcgacgt cgacaggatg gaccggccca
    12241 cggcgggagc ctcggcgaag cgcacggtct tggggatcgg cggttcgagg accggcaggc
    12301 cgtagcgttc gcccacgtcg gcgagcacct cctgagcatg gttgctgcgc ccgtcgaaca
    12361 gggtgggcag gatgccgagc acgcgaaggt ccttgttgag gatcttctgc acgtcggcga
    12421 ccgtgtcgag gagctgcccc accccacgat ggctcaacat ctcgcagggc atcgggatga
    12481 tgaggccctg gctggccgtc aacgcgttga gcgtgagcac ccccaggctg ggcgagcagt
    12541 ccagcatgat cacgtcgtac tcgccccgga cctcgtcgag cacggtgcgc aggatgtact
    12601 cgcgccccgg ccgcggcagc agctgcgcct cggcaccggc gaggtcgatc acactcggca
    12661 ccaggtccac gccgtcgtcg caggccaccc gcacgtcggc gatggaagct cgcccgagca
    12721 ggacctcgtt gatcgaggcg tcgacctcgt cggggttgac ccccaggctg aaggtcaggc
    12781 aggcctgggc gtcaaggtcg accagcagca cccgcttgcc ctgctccgcg aacgcggcac
    12841 cgagggacgc gaccgaagtg gtcttggcga cgccgccctt ctggttcgcc acggagacga
    12901 ccgtggcctg cttcggggtg gtggtgcgtg ccaagacaag acctttcaca agctgtgggt
    12961 atgccgggga ccggctcagt ctttcaggtc gccgtgggcg atgacgacgg gcgtctcgag
    13021 agcggcccag ccgctcttct cagccccgac ggcctggccc tcgggacagt gcgaccggaa
    13081 gtcgcaccat tggcagagcg ggcccaccgc cgccgggaaa cggccggagt ccacgccgtg
    13141 ctcggcatag tcctcctcgg cgcgccgggc atcgcgggca atggactcgg cctcggcgat
    13201 cttgcgctgc agcgactccc cggtgtgctc gtgaaccgcc accgtcccgg tgggcacatg
    13261 atgcagctcg acctgcacgc accgtcggcg gaacatcttc cacacggccg cggcatacag
    13321 cgcga
//
LOCUS       DASYFY010000481         4266 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1296289, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000481 DASYFY010000000
VERSION     DASYFY010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296289"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..909)
                     /locus_tag="VGN19_09730"
     CDS             complement(160..909)
                     /locus_tag="VGN19_09730"
                     /inference="COORDINATES: protein motif:HMM:NF025687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4386 domain-containing protein"
                     /protein_id="HEV7196210.1"
                     /translation="MATITAPTLTAHRAPVDWTRGNARAAGIFYLVTFAASVPAAFYF
                     LAPILNDPNYIVSSGADTRVLIGCLLDVVTALAGIGSAVAVFPVVRRQNESMALGFVT
                     SRMFEAAVIMVGVVSLLAVVTLRQSGVTGAEHGSLVTTGHALVAVRNYTFQFGPNLSA
                     AVNGLLFGTLLYKSRLVPRFIPIMGLVAAPLLLVATIATVSGLTEQGSAWFAPGGALI
                     FVWELSVGTYMTVKGFKPSSITARTPEVPLG"
     gene            complement(911..1192)
                     /locus_tag="VGN19_09735"
     CDS             complement(911..1192)
                     /locus_tag="VGN19_09735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196211.1"
                     /translation="MPDSSASDPHDPGWYEIRLQGHLAPRWAASFDGLTLTARDDGTT
                     VLNGPIVDQAALHGVLSKLRDIGLPLVSVTQVHPDLAQPTAPHPTAQGD"
     gene            complement(1386..4130)
                     /locus_tag="VGN19_09740"
     CDS             complement(1386..4130)
                     /locus_tag="VGN19_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEV7196212.1"
                     /translation="MASPLVDTKLFVPRLRRTVLTRSRLSERLSGGTGATLTLVSAPA
                     GFGKTTAVVAWLAQLPKDQAVAWLSLEHSDKAPTSFWTYVVTALHRAVPGVGINVLAL
                     LDSAQPPLEVLLATLLNDLGALPNDLYLVLDDYHLVDGPAVASGMAYLLEHLPPQVHV
                     VLSTRADPDLPLARLRARGELVEVRAADLRFTPQEVAAYFVGSAGLELSERDLATLEA
                     RTEGWVAALQLTALSMQGRVDVAGFIDSFAGDDRYIVDYLVEEVLSRQPDNVRSFLVQ
                     TSILDRLSGDLCDAVTGQHGGNAMLEALDRANLFLVPLDDNRRWYRYHHLFADVLQAH
                     LRDERPDQLADLHRRASEWYDHAGEPASAVRHAIACGDLARVADLVELAIPALQRARQ
                     EATVRGWIDAIPDDVVRARPVLGIGFVAALMSRGEFDDVPRRLRDIERWLPTASDEAA
                     EADGQTHPSGMVVVDEAQLPLLPGMVQLYWTGLALVTGDTPGIHRHAQQTLAAAFPDD
                     HVTRAGAHALSGLASWGAGDLDAAHRAYSTSMQGLRRGGNLSDVLGCSVTLADIRITQ
                     GRLGDALSTYEDALHLASREPGVLRGTADMYVGISGICLQRNDLDAATQYLRRGQEIG
                     ETFGLPQYPYRRLVTLALVQEMRGDPDGALQLLNQAQHVYTADFLPNVRPVPAMKARL
                     LAAHGKVDQALAWANEHGLSASDDLSYVHEYEHITLAGVLLAQYAARHSEAALRGAFD
                     LLEGLLAAAEHGKRTGSVIEILVLQAMAHHARGGAAGSALAPLERALSLAEPEGYVRV
                     FTGHGIPTSSLLGSLASRMPTWPYLRRLQAASAEHPARPPGAGLGRSAAAQGLVDPLS
                     PRELEVLRLLGTDLDGPELARHLVVSLNTLRTHTKNIYAKLDVTSRRAAVRRAAELDL
                     "
BASE COUNT          704 a         1358 c         1549 g          655 t
ORIGIN      
        1 cccagcggag acgatcgcgg tgcagcttct gcccaccggt tccacccgca ggatcgacga
       61 gccagttcct gcgtcctgtt cccgttaggt cgaccctgtg gcaaaggcgg cccacctgat
      121 gcgatgggcc gccgacgcga ctgccgaacg ggcagcgatt cagccgagcg gaacctccgg
      181 tgtcctcgcc gtgatggacg agggcttgaa gcccttgacg gtcatgtacg tgccgacaga
      241 cagctcccag acgaagatga gcgcgccacc gggggcgaac catgcggagc cctgttcggt
      301 cagtccggac accgtggcga tggtggcgac caggagcagg ggcgcggcga ccaggcccat
      361 gatggggatg aagcggggga cgaggcggga cttgtagagc agcgtcccga acagcagtcc
      421 gttgacggcc gcgctcaggt tggggccgaa ctggaaggtg tagttccgaa ccgcgaccag
      481 ggcatggcca gtcgtcacga gcgagccatg ctcggccccg gtgaccccgc tctgacgcaa
      541 ggtcacgacg gcgagcaggc tgacgacccc gaccatgatg acggccgctt cgaacatgcg
      601 agacgtcacg aagcccagcg ccatcgactc gttctggcgg cgcaccacgg ggaagacagc
      661 gacggcgctg ccgatgccgg ccaaggccgt gaccacgtcg agcaggcacc cgatgagcac
      721 ccgcgtgtcc gcccccgagc tcacgatgta gttggggtcg ttcaggattg gtgcgaggaa
      781 gtagaacgcg gccgggacgg aagcggcgaa cgtgaccagg tagaagatgc ctgcggcgcg
      841 ggcgttgccg cgggtccagt ccaccggggc gcggtgtgcg gtgagggtgg gggcagtgat
      901 ggttgccatg tcagtctcct tgagctgtgg ggtgcggggc ggtgggttgt gccaggtccg
      961 ggtggacctg ggtgacggag accagcggca ggccgatgtc gcgcagcttg ctgagcacgc
     1021 cgtgcaaggc ggcctggtca acgatgggac cgttgaggac ggtggtgccg tcatccctgg
     1081 cggtgagcgt caggccgtcg aagctggcgg cccaccgagg ggcgagatgc ccctggaggc
     1141 ggatctcgta ccagccggga tcgtgcgggt cgctggctga gctgtccggc atggcgctgc
     1201 ctctcgagtc gtgtcccgcc ggtgtccggc ctgtggccgc tcctggttgg ggggtcgctc
     1261 gaaacgtagg agccgatgtg gtgagtcgac atcaccagac gtggtgatcg tggtggtgat
     1321 tcctgcgcgg gcagcgggga tgcatcgggc aggtcagctg ggccctcagc ggtcgcggtt
     1381 gctctctaaa ggtcgagctc ggcggctcgg cgcactgccg cacgtcggct ggtgacgtcg
     1441 agcttggcgt agatgttctt ggtgtgggtt cgcagcgtgt tcagcgacac gacgaggtgg
     1501 cgagcgagct cgggtccgtc caggtcggtg ccgagcaggc gcagcacctc gagttctcgc
     1561 gggctcagcg ggtcgacaag gccctgggcc gcagcggaac ggccaagccc cgcacctggt
     1621 ggtcgcgcag ggtgctcggc ggacgcggcc tggagtcgac gcaggtaggg ccacgtcggc
     1681 atacgcgatg cgagggaacc aagcaacgag ctggtcggta tgccgtgccc cgtgaacacc
     1741 cggacgtatc cctcgggttc ggccaaggag agggcacgct ccaacggcgc gagggcactg
     1801 ccggcggccc caccacgcgc gtgatgcgcc atcgcctgaa gaaccaggat ctcaatgacg
     1861 ctccccgtcc gctttccgtg ctctgctgcc gccaagagcc cctccaagag atcgaaggcc
     1921 ccccgcaagg ccgcctcgga gtgtcgtgcc gcgtactgcg ccaacagcac cccggccagg
     1981 gtgatgtgtt cgtactcatg gacataggac aggtcgtcgg aggcggacag cccgtgctca
     2041 ttcgcccacg ccaatgcctg gtcgaccttg ccgtgagctg ccagcaggcg cgccttcatc
     2101 gctggcaccg ggcgcacatt cgggaggaag tctgccgtgt agacgtgctg ggcctggttg
     2161 agaagctgga gtgcgccgtc cgggtcgccc ctcatctcct gaacgagcgc cagggtcacc
     2221 agtcgtcggt aggggtactg cggcagcccg aaggtctcgc cgatctcctg gccacgccgg
     2281 aggtattggg tcgcagcatc aagatcgttg cgttgcaggc agatcccgct gatgccgacg
     2341 tacatgtcag ccgtccctcg caacaccccg ggctcgcggg aggcaaggtg aagcgcgtcc
     2401 tcgtaggtgg acagggcgtc acccagccgt ccctgggtga tgcggatgtc ggccagggtg
     2461 accgagcacc ccagcacgtc ggagaggttg ccgccgcgtc gcaaaccctg catcgacgtc
     2521 gagtaggcgc ggtgcgctgc gtcgaggtcc ccagcccccc aagatgcgag tccggacagg
     2581 gcgtgggcac ccgctcgggt gacgtggtcg tccggaaacg cagcggcgag ggtctgctgg
     2641 gcgtggcgat ggatgcctgg cgtatcaccg gtgacgaggg ccagcccggt ccagtacagc
     2701 tggaccatgc ccggtagcag cgggagctgc gcctcgtcga cgacgaccat cccggaagga
     2761 tgagtctggc cgtcagcctc agcagcctcg tcgctcgccg tggggagcca tcgttcgatg
     2821 tcgcgcagtc gcctcgggac atcgtcgaac tctcctcgcg acatcagggc cgcaacgaag
     2881 ccgatgccga gtaccggtcg ggcgcgaacg acgtcgtcgg ggatggcgtc gatccagcca
     2941 cggacggtcg cctcctgcct ggcacgctgc agggcaggga tggccagttc gaccaggtcc
     3001 gcgacgcggg cgaggtctcc acacgcgatg gcgtgacgca ccgccgacgc gggctctccg
     3061 gcgtggtcgt accactcgct ggcccgacgg tgcagatcgg cgagctggtc gggccgctcg
     3121 tcgcgaaggt gcgcctgcag gacgtcagcg aacaggtggt ggtagcggta ccaccgacgg
     3181 ttgtcgtcga ggggcaccag gaacaggttt gcccggtcga gggcttcgag catcgcgttt
     3241 ccgccatgct gcccggtgac cgcgtcgcac aggtcgccgc tgagccggtc caggatgctg
     3301 gtctggacca ggaagctgcg cacgttgtcg ggttggcggg agagcacctc ctcgacaagg
     3361 tagtcgacga tgtagcggtc gtcccctgcg aagctgtcga tgaagccggc gacatcgacc
     3421 cggccctgca tggagagggc agtgagctga agggcggcaa cccagccctc ggtccgtgcc
     3481 tccaaggtgg cgaggtcgcg ctcggacagc tccagaccgg cagacccgac gaagtacgcc
     3541 gccacctcct gaggggtgaa gcgcagatcg gcagcgcgca cctcgacgag ctcgccccgc
     3601 gcccgcaggc gtgccagggg caggtccggg tcggcccggg tgctgagcac cacgtgcacc
     3661 tgcgggggca ggtgctcgag caggtaggcc atgccggacg cgacagccgg cccgtcgacc
     3721 aggtgatagt cgtccagcac caggtacagg tcgttcggca atgcaccgag atcgttgagc
     3781 agggtggcga gcaggacctc aagcggtggc tgggccgagt cgagcagcgc aaggacgttg
     3841 atacccaccc cggggacagc ccgatgcagc gcggtcacga cgtacgtcca gaaggatgtc
     3901 ggcgccttgt cgctgtgctc caacgacaac cacgccactg cctggtcctt cggcagctgg
     3961 gccagccagg cgaccaccgc cgtcgtcttg ccgaagcccg ccggagccga aaccagcgtc
     4021 aacgtggctc cggtgccacc gctgagacgc tcactcaatc gtgaacgggt cagcaccgtg
     4081 cgtcgcaggc gcgggacgaa gagcttggtg tcgaccaaag ggctcgccat gacagctccg
     4141 ctcgtgagct ccgcaccggt gtgagctcga gcgtatgccc ccgaggtgac cgtgactgtg
     4201 tggttgcgat ggaccgggac catggtccgt gtgctcgttg tactaatccc aaggcgccca
     4261 tagcct
//
LOCUS       DASYFY010000482         4225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1086731, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000482 DASYFY010000000
VERSION     DASYFY010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1086731"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1364)
                     /locus_tag="VGN19_09745"
     CDS             complement(<1..1364)
                     /locus_tag="VGN19_09745"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEV7196213.1"
                     /translation="MSDDTMALSEGRWRRVPMVRWLPRYQAAWLRGDLIAGAVVAALA
                     IPQALGYASIAGAPVEVGLYALPVALVAYAVFGSSRQLVVGPVSTVSVLSGSFLASFG
                     VAGTARAASYTAALALGSGLVLVAAGFVRIGWMAEFLSKPIVTGFVLGLTLLVILNEV
                     PHLVGVPTPAGKVIERVGALGSSVTRGEADLTTVAVSAVSLVLLFAGHRLLPKFPWGL
                     LVLIGGLAASAALDLQARGVEVVGPVPQGLPTPGIPAVDPADLVGLLTAGGALALVGL
                     AEGLSAARLFAARGAYRIDADQELLASGAANVASGLFGGLGVAGSLSKTAAVSDARGR
                     TQLTGLAAAGLAVVVIVAIAPALSVLPRAVLSAIVVNAVWKLMDFEALGRYSRVRRND
                     IVAAVIAAVGVLAFGPLNGLLLAVAGSVIGLVFRSTRVDVEVMGKVPAEKAAWGSIRN
                     HAERS"
     gene            complement(1601..2794)
                     /locus_tag="VGN19_09750"
     CDS             complement(1601..2794)
                     /locus_tag="VGN19_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEV7196214.1"
                     /translation="MGPDEQRGTTIVTTFDGGRGLDELDGLTRDLVLTVLIHGPITRS
                     ELADRLGVSAPTLTRLAAPLVDGGLLESADEPVAGRLGRPARPLDIVTGNHEFVGIKL
                     SGDSIHAVRTDLRARVLESVDARLEDHDPTAVVDAVERLVVSLAEPSAVTAIGISLGG
                     STPDHREVSRAPFLGWTGVPLAALVTERLGRPTAIENDLLAMTLAEQWFGDGRDIDNF
                     AVLTIGAGVGYGLVTHRRLVTSPDAGVGLVGHFPVAPEGPWCADGHRGCADTMLSISG
                     VRSQAAVALRRDLSYDDVLDLAEEGDPAMSAIVRESSLALGRLVAAVANLTMSQRIFV
                     SGEGIRLAQIGQQHVRAGIARDRDPNASAVDLVLQPYDSDLWARGAAAVAIQHFMLSS
                     DAPAR"
     gene            2940..4220
                     /locus_tag="VGN19_09755"
     CDS             2940..4220
                     /locus_tag="VGN19_09755"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEV7196215.1"
                     /translation="MRTSSRTALLALAGTTATALALTACSGGSSASTTDANKKVTLTY
                     WHAYSADSPEVHQLETVVIPAFTKAHPNITVKDVAFPYDQLHQKLLTSAAGGNLPCLV
                     RSDIIWVPELAKLGAIVDMDKQLPEFGTIAGRTYPGALATNLYKGEHFGLPLDTNTRV
                     LMYNQATLTKAGMTSPPKTFDDVRALAAKLKGTGDVAFADNGTSGWNLFPWIWSAGGD
                     VTDPAQTKATGYLNSAKSVAGVQLLVDLYKQGQLPNIVMGGKGGLDTAVGLPNGKYAS
                     ILDGPWMYPIFQKQNPTFAIKTAPVPDGGGGSISVVGGEDLVMTSSCPDMPEASEFAR
                     YMLSDDAQIAMAKVGQMPVLKDLGSKLTAIQPYYAPFVAQLQTAKPRLPNPEYPKIET
                     IISDEVQKAFKGQETVQQALDAAASQVDPLLANG"
BASE COUNT          759 a         1466 c         1434 g          566 t
ORIGIN      
        1 gagcgctcag catggttgcg gatgctcccc caggcagcct tctcagcggg cactttgccc
       61 atcacttcga cgtcgaccct cgtggagcgg aagaccaaac cgatcaccga tccggccacg
      121 gcgagtaaca ggccattcag agggccgaag gccagcacgc ccaccgcagc gatgactgcg
      181 gccacgatgt cgttgcggcg cacccggctg taccggccca aggcctcgaa gtccatgagc
      241 ttccacaccg cgttgaccac gatcgcgctc aacaccgccc gtgggagcac cgacagcgcg
      301 ggggcgatgg cgacgatgac aaccacggcc agtcccgccg cagccagccc ggtcagctgc
      361 gtccgcccgc gcgcgtcact gaccgcggcc gtcttggaca ggctcccagc cacgccgagc
      421 ccaccgaaca ggccggacgc gacgttggcc gcgccggagg cgagcaactc ctggtcggcg
      481 tcgatccggt aggcccctcg ggccgcgaag aggcgggccg cgctcaagcc ctctgccagg
      541 cccacgaggg cgagggcccc tccggcggtg agtaggccga ccagatcggc ggggtcgacg
      601 gcagggatgc cgggcgtcgg cagcccctgc gggaccgggc cgacgacctc aaccccgcgt
      661 gcctgcagat ccagcgctgc tgacgccgcc aggccgccga tcaggaccaa gagaccccac
      721 gggaacttcg gaagcagacg gtgcccggcg aagaggagca cgagcgagac cgccgacacg
      781 gccacggtcg tgaggtcggc ctcgccgcga gtgacactcg agccaagggc gccgacccgt
      841 tcgatcacct ttcctgcggg cgtcggcacc ccgacgaggt ggggcacttc gttgaggatg
      901 accagcaggg tcagtccgag gacgaagcct gtgacgatgg gcttggacag gaactcggcc
      961 atccacccga tccggacgaa gcccgcggcg acgagcacca gccctgagcc gagcgccagg
     1021 gcggctgtgt atgacgcggc tcgcgctgta ccggcgaccc cgaagctggc caggaaggac
     1081 ccggacagca cggacacggt cgacaccggg cccacgacga gctgtcggga cgagccgaac
     1141 acggcgtatg ccacgagcgc cactgggagc gcgtagaggc cgacctcgac gggagcacct
     1201 gcgatcgacg cgtagccgag agcctgcgga atcgcgagcg ccgccaccac tgcgccagcg
     1261 atgaggtctc cgcgaagcca cgcagcttgg tagcgcggca gccagcggac catgggaacc
     1321 cggcgccagc ggccctccga gagggccatc gtgtcatcgc tcacccgtgc cacctcgttc
     1381 tgccaggtgt gctgccacgc taccggagca gatccgtggc gccccaagcc aatgggccac
     1441 gcggcgaaag gactgtgagg atcgccaaga acctgatcga cgcggtcgag ccgctgtccc
     1501 gtccggccgg accctctggc ggcccagcct tgcaaccagc tgaacgacac cttgccatcg
     1561 tcgagaacaa gggcgcgtcg ccggtgactc cgcgtgatcg tcagcgagct ggtgcgtcgc
     1621 tgctgagcat gaagtgctgg atggccacgg ctgctgcgcc ccgggcccag aggtcggaat
     1681 cgtatggctg cagaacgagg tcgaccgcgg aggcgttggg gtcgcggtcg cgtgcgattc
     1741 ccgcgcggac gtgctgctgg ccgatctggg caaggcggat accttcaccg gacacgaaga
     1801 tcctctggct catggtgagg ttggcgacgg ccgcgacgag tcgaccgagc gcgagtgacg
     1861 actcccggac gatcgcggac atggccgggt cgccctcttc ggcgaggtct agaacatcgt
     1921 cgtaggagag atcgcgcctc aacgccacgg cggcctggga gcgcaccccg ctgatgctga
     1981 gcatcgtgtc tgcgcagccg cggtggccgt cagcgcacca ggggccttcg ggtgccaccg
     2041 ggaaatgacc gacgagaccc accccggcgt cggggcttgt caccagacgt cggtgggtca
     2101 ccaggccgta gccaacgcct gcaccgatgg tgagcacggc aaagttgtcg atgtcgcggc
     2161 cgtcgccgaa ccactgttcg gcgagcgtca tggcgagaag gtcgttctcg atggcggtgg
     2221 gtcgtcccag gcgttcggtc accagggctg cgagaggaac gccggtccag ccgaggaaag
     2281 gggcccgcga gacctcgcgg tggtcggggg tgctcccgcc gaggctgatg ccgatggccg
     2341 tcacggcgct cggctcggcc agcgacacga cgagccgctc gacggcgtcg acgacggcag
     2401 tcgggtcgtg gtcctccagc cgcgcgtcga ctgactccag cacccgggcg cgtaggtcgg
     2461 tgcgtacggc gtggatcgag tcgcccgaga gcttgatgcc gacgaactcg tggttgccgg
     2521 tcacgatgtc gagggggcga gcgggccggc ccagtcgacc ggcgacgggt tcgtcggcgg
     2581 attcgagcag gccaccgtct acgagcgggg cagccagccg ggtgagcgtg ggggccgaca
     2641 cgccgagtcg gtcggccagc tccgagcgcg tgatcgggcc gtggatgagg acggtgagga
     2701 ccaggtcgcg ggtcagcccg tcgagctcgt cgagcccccg gccgccgtcg aacgtcgtga
     2761 ctatcgtcgt acctctctgc tcgtcagggc ccatacttca tttcagatga atgctaaagc
     2821 acccgactgg ccggtgaaag gtccagtctt gacgcctact aacttccatg gtgaaaatat
     2881 acccgacgac atgcccgtcg tcaccagacg caacgacgcg ttacccctgg aggacgaaga
     2941 tgcggaccag ttcccgcacg gcactgctcg ccctggccgg caccacggcc acggctctgg
     3001 cgctgacggc ttgctccggt gggtcgtcgg cctcgacgac ggacgccaac aagaaggtca
     3061 ccctcacgta ctggcacgcg tacagcgcgg acagtcccga ggtgcaccag ctcgagacgg
     3121 tcgtcatccc ggccttcacc aaggcccacc ccaacatcac cgtcaaggat gtggcgttcc
     3181 cctacgacca gctgcaccag aagctgctca cctccgcggc cggcggcaac ctgccgtgcc
     3241 tcgtgcgcag cgacatcatc tgggtgcctg agctggccaa gctcggcgcg atcgtcgaca
     3301 tggacaagca gctgcccgag ttcgggacga tcgccggccg gacctacccc ggcgctctgg
     3361 cgacgaacct ctacaagggg gagcacttcg gcctgccact ggacacgaac acgcgcgtgc
     3421 tcatgtacaa ccaggcgacg ctgaccaagg cgggcatgac cagcccgccg aagaccttcg
     3481 acgacgtgcg cgcgctcgcg gccaagctca agggaaccgg cgacgtcgcg ttcgcggaca
     3541 acggcacgag tggctggaac ctcttcccct ggatctggtc ggccggcggc gacgtcaccg
     3601 atcccgccca gaccaaggcg accggctacc tcaactcggc caagtcggtg gccggggtgc
     3661 agctgctcgt cgacctgtac aagcagggcc agctgcccaa catcgtcatg ggcggcaagg
     3721 gcggactgga caccgcggtc ggactgccca acggcaagta cgcctcgatc ctcgacggcc
     3781 cgtggatgta ccccatcttc cagaagcaga acccgacgtt cgccatcaag accgccccgg
     3841 tccccgacgg gggcggaggc tcgatctcgg tcgtcggcgg tgaggacctc gtcatgacga
     3901 gcagctgccc cgacatgccc gaggcctcgg agttcgcccg ctacatgctg agcgacgacg
     3961 cccagatcgc catggccaag gtcggacaga tgccggtcct gaaggacctc ggcagcaagt
     4021 tgaccgccat ccagccgtac tacgcaccct tcgtcgcgca gctgcagacg gccaagccgc
     4081 ggctgcccaa cccggagtac ccgaagatcg agacgatcat ctccgacgag gtccagaagg
     4141 cgttcaaggg tcaggagacg gttcagcagg cactcgacgc cgcggccagc caggtggacc
     4201 cgctcctggc gaacggatga cggcc
//
LOCUS       DASYFY010000483         1566 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_348967, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000483 DASYFY010000000
VERSION     DASYFY010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348967"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VGN19_09760"
     CDS             complement(<1..239)
                     /locus_tag="VGN19_09760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196216.1"
                     /translation="MATSSAAGRRPRRPTVPVGARHLLHGAAVDFAALRTELQVPQAF
                     PKTVEAAAADVAVHHTPTAADYTVATHLDLVTVDPT"
     gene            323..399
                     /locus_tag="VGN19_09765"
     tRNA            323..399
                     /locus_tag="VGN19_09765"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:357..359,aa:Val,seq:gac)
     gene            509..>1566
                     /locus_tag="VGN19_09770"
     CDS             509..>1566
                     /locus_tag="VGN19_09770"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEV7196217.1"
                     /translation="MAARPTVRWNEKAGRWMAWVRFPDGTRRKVERVDNADAQRDLDE
                     LLALRAQSLDPGPRRAKKATFAEVVDAWMEAGCPTVSPSKRTRHVREKSPNTIANAGQ
                     LLRTSVLPIIGKQWVERTGRDRLEDLFKSMAANGYATSTIDRTWGYLNQACEYGLRTR
                     LIKTNPAADVMLPAVRPPKKRKSFTIDEAQRLLTDGIPSDPRPAMWLTGLMCGLRPGE
                     LAGLRWPYVDLDSDEPSIDVFERAVEVDDKYVGQGSTKTARGERRLGLDPLLVAALQR
                     HRDEAKMLGLYDPEGFVFCTRTGSPMTMSNMRRAFRTMCAKAGLGDDWTTYELRHSFV
                     SLVADQLDSLMKVADLAG"
BASE COUNT          255 a          512 c          553 g          246 t
ORIGIN      
        1 gtcgggtcga ccgtgaccag gtcgaggtgg gtggccaccg tgtagtcggc ggcggtgggg
       61 gtgtggtgta cggcgacgtc ggcggccgcg gcctcgaccg tcttggggaa cgcctgaggc
      121 acctgcagct ccgtgcgcag cgcggcgaag tcgaccgcgg cgccgtgcaa caggtgccgg
      181 gccccgacgg gaaccgtggg tcgccggggc cggcggcctg ctgcactcga cgtcgccacg
      241 accgcaagct agtggtgggg tgtgacggcc acgtggctca tcagggcctt cccggaggcc
      301 tgctagtctc gccagtcccc aggggcgatt agctcagttg gttagagcac ctgcatgacg
      361 cgcagggggt caggggttcg aatcccttat cgcccaccag aaaagtgctg ttcaaagcat
      421 ttctgatcga tagattgcag aaagacttcc ccggcgtagc cgctctgagc gtagcctttg
      481 gcctgttggc tacgtcggag gttcccaggt ggcagcccgt cccacggtgc gttggaacga
      541 gaaggccggt cgctggatgg cctgggtccg cttcccggat ggcacgcgac gcaaggtcga
      601 gcgggtcgat aacgccgacg cgcaacgcga tctcgacgag ctcctggcgc tccgggccca
      661 gtcgctcgac ccgggcccgc ggcgtgccaa aaaggccacc ttcgccgagg tggtcgacgc
      721 atggatggag gcgggctgtc ccacggtgtc gccctcgaag cggacccgtc acgtgcgtga
      781 gaagtcgccg aacaccatcg cgaacgccgg ccagctcctg aggacgagcg tcctgcccat
      841 catcgggaag cagtgggtcg aacggactgg cagggaccgg ctcgaggacc ttttcaagtc
      901 gatggctgcg aacggctacg cgacgagcac gatcgatcgc acctggggct acctcaacca
      961 ggcgtgcgag tacggcctgc ggacgcggct gatcaagacc aacccggccg cagatgtgat
     1021 gctcccggcg gtgcgcccgc ccaagaagcg caagagcttc accatcgacg aggcacagcg
     1081 gctgctcacc gacggaatcc catcggatcc tcgtccggcg atgtggctca ccgggttgat
     1141 gtgcggcctc cggccgggtg agctggctgg gctccggtgg ccatacgtcg acctcgattc
     1201 cgacgagccg tcgatcgacg tgttcgagcg ggccgtcgag gtggacgaca agtacgtcgg
     1261 gcaggggagc accaagaccg ctcggggtga gcgccggctc gggctggacc cgctcctcgt
     1321 cgccgcgctg cagcgtcacc gcgacgaggc gaagatgctc ggcctctatg accccgaggg
     1381 gttcgtgttc tgcacccgca ccggctcgcc catgaccatg tcgaacatgc ggcgggcgtt
     1441 ccggacgatg tgcgcgaagg ccgggctcgg cgacgactgg accacctacg agctgcgcca
     1501 ctcgttcgtc tcgctcgtcg ccgaccagct cgacagcctg atgaaggtcg ccgacctcgc
     1561 cggcca
//
LOCUS       DASYFY010000484         3235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_875401, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000484 DASYFY010000000
VERSION     DASYFY010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3235
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_875401"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VGN19_09775"
     CDS             complement(<1..193)
                     /locus_tag="VGN19_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7196218.1"
                     /translation="MLTIAFPAAAFGTNCYVLAPAPGEECLIVDPGVGVEDTVREVLA
                     QHRLRPAAVLLTHGHLDHVY"
     gene            238..1062
                     /locus_tag="VGN19_09780"
     CDS             238..1062
                     /locus_tag="VGN19_09780"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEV7196219.1"
                     /translation="MTKEQERAKARRRQMKLDERAAAREREAARNRQVAIVVAAVLVV
                     VAGFVFLATKLNGHTPAVAATHSPLASASATPSASTTAVAGCTAPPAHPTAIKTQKLP
                     DKRTAAGKHFTAVVTTNCGPITLTLDGAKAPQTVASFVALAKAKYFAASPCHRLTTAG
                     IYVLQCGDPLGGQGTGPGYSYGIENAPKDGVYPAGTLAMARTTDPNSNADQFFVVYKN
                     STLPTTGGGYSIFGAVTGGMDIVNKIAAAGASGGTGDGAPNAPISILSVAVTEKKA"
     gene            1389..2714
                     /locus_tag="VGN19_09785"
     CDS             1389..2714
                     /locus_tag="VGN19_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF349 domain-containing protein"
                     /protein_id="HEV7196220.1"
                     /translation="MPTPAAVRKVAHAHPAAPVVTAPGPAAETFGRVAEDGTVFVRTP
                     EGEREVGAYPGATAEEALHYFARKFDELYASADLLHQRVTTTDLSAKDAADGLAKLRE
                     HCAEANVVGDLAALEAKVAQIATAVGARKESESAERHAARATATAEREQIVTEAETIA
                     GQPENKIQWKSSGTRMRALLDEWKQHQRNGVRLDRETEAALWQRFSTARNTFDKARRV
                     HFAQLEGTQAEAKSAKQALVAEAEALATNTDWGPTAGAFKRLMDRWRQAGRASRSDDD
                     ALWERFKAAQDAFFAAKDEVAAQEDEEFRSNLAVKEELLAQAQTILPITDLEVAKTAL
                     RAIQDKWDAAGKVPRGDVDRIEKAMRRIEQAVRDADDKRWHQSNPEVAARAQSMVDQL
                     EASVASLREDVEKAKSAGNERKVKDAEAKLHAQELWLEQARGNVDEFGA"
     gene            complement(2739..>3235)
                     /locus_tag="VGN19_09790"
     CDS             complement(2739..>3235)
                     /locus_tag="VGN19_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEV7196221.1"
                     /translation="RSMRRRSGDPGVVVVGTADVWVKLARCCTPVPGDPIIGFITRGS
                     GVSVHRMDCTNAESLLSHPDRLIEVEWAPSAASVFLVQLQVEALDRNRLLSDVTRVLS
                     DQHVNILSASVQTSRDRVAISKFTFEMGDPSHLDHVIKAVRKIDGVFDVYRITGTKAT
                     AAKA"
BASE COUNT          599 a         1143 c         1094 g          399 t
ORIGIN      
        1 catacacatg gtccagatgt ccgtgggtga gcagcaccgc ggccggacgc aaccggtgct
       61 gggccaggac ttcacgcacc gtgtcctcca cccccacgcc aggatcgacg atcaggcact
      121 cctcgccggg ggcgggagcg agcacatagc agttggtccc gaaggcagcg gccgggaacg
      181 cgatggtcaa cacgacccgc agcctagcca cgagtccggc tgcctagact ggcgcgcgtg
      241 accaaggaac aggagcgagc caaggcccgc cgccgtcaga tgaagctcga cgaacgagca
      301 gccgcccgcg agcgcgaggc ggcccgaaac cgccaggtcg ccatcgtggt tgccgcggta
      361 ctggtcgtgg tggccgggtt cgtgttcctg gcaacgaagc tcaacggcca cacccctgcg
      421 gtcgcggcca cgcacagtcc cttggcgagc gcctccgcaa ccccctccgc aagcaccacc
      481 gcggtggccg gatgcacagc tcccccagcg catcccactg ccatcaagac ccagaagctg
      541 cccgacaaga ggactgcggc cggcaagcac ttcactgctg tcgtcaccac caactgcggg
      601 cccatcacgt tgaccctcga cggcgccaag gccccccaga cggtcgcctc gttcgtggcc
      661 ctggccaagg ccaagtactt cgcggccagc ccctgccatc ggctgaccac cgcggggatc
      721 tacgtgctgc agtgtgggga cccgttggga ggccagggca ccggccccgg gtactcctat
      781 ggcatcgaga acgctcccaa ggacggggtg tacccggcgg gaacgctggc catggcccgc
      841 accaccgacc ccaacagcaa cgccgaccag ttcttcgtcg tctacaagaa ctcgacactg
      901 ccgacgaccg gcggcgggta ctccatcttc ggcgcagtga ccggtggaat ggatatcgtc
      961 aacaagatcg ccgcagcagg cgcgagcggt ggtaccggcg acggcgcccc gaacgcaccc
     1021 atcagcatcc tgtcggttgc tgtgaccgag aagaaggctt gaccgtgact gagcacaaca
     1081 tatcggctga ccccacggcg cccgagggcg ttgaggagct cttgagctcc gaagccgaga
     1141 ccccgcaggc cacgcccgaa ccagtgtcgg agtccgcgcc cgaaccagtg ccggagtccg
     1201 cgcccgaacc agtgccggag tccgcgcccg aaccagtgtc ggagtccgcg cccgaaccag
     1261 tgtcggagcc ggtctccgag ccggtctcgg agtcggcgcc ggcgtctgag gaaccggagc
     1321 ccgcacctga gccagtgtcg gagcctgctc ccaagccggt ccctgcgcca gcccccaagc
     1381 ccggaccgat gccgacgcca gcggcggtgc gcaaggttgc gcacgcccac cccgcagccc
     1441 cggtcgtgac ggcacctgga ccggccgcag agaccttcgg cagggtggcg gaggacggca
     1501 cggtcttcgt gcgcacgccc gagggcgagc gcgaggtcgg cgcctacccc ggagccaccg
     1561 ctgaggaggc gctgcactac ttcgcccgca agttcgacga gctgtacgcg tcggccgacc
     1621 tgctccacca gcgcgtcacc accaccgacc tgtccgccaa ggatgccgcg gacggccttg
     1681 ccaagctgcg agagcactgc gccgaggcga atgtcgtcgg cgacctcgcc gcgctcgagg
     1741 ccaaagtcgc gcagatcgcc accgcagtcg gcgcccgcaa ggagtcggag tcggcggagc
     1801 ggcacgctgc tcgggcgaca gcgaccgccg agcgcgagca gatcgtcacc gaggccgaga
     1861 ccatcgccgg ccagcccgag aacaagatcc agtggaagag cagcggcacg cggatgcggg
     1921 ccctgctcga cgagtggaaa cagcaccagc gcaacggcgt tcggctggac cgcgagaccg
     1981 aagccgcgct gtggcaacgc ttctcgaccg ccaggaacac cttcgacaag gcccggcggg
     2041 tccacttcgc ccagctcgag ggcacccagg ctgaagccaa gtcggccaag caggcgctgg
     2101 tcgccgaggc ggaggcccta gccaccaaca ccgactgggg cccgactgcc ggggccttca
     2161 agcgactgat ggaccgctgg cgccaagccg gccgcgcatc gcgctcggac gacgacgcgt
     2221 tgtgggagcg gttcaaggcg gcccaggacg cgttcttcgc cgccaaggac gaggtcgcgg
     2281 cccaagagga cgaagagttc cgaagcaacc tcgcggtcaa ggaggagctg ctcgcccagg
     2341 ctcagaccat cctgcccatc accgacctcg aggtcgcgaa gaccgctctg cgcgcgatcc
     2401 aggacaagtg ggatgcggcg ggcaaggtgc cgcgaggcga cgtggaccgg atcgagaagg
     2461 ccatgcgacg catcgagcag gccgttcgcg atgcggacga caagcggtgg catcagagca
     2521 atcccgaggt cgcggcccgg gcgcagagca tggtcgacca gctcgaggcg tccgtggcgt
     2581 cgctgcgcga ggacgtcgag aaggccaaga gcgccggcaa cgaacgcaag gtcaaggacg
     2641 ccgaggcgaa gctccacgct caggagctgt ggctggagca ggctcgcggc aacgtcgacg
     2701 agttcggcgc ctgagcgtcc cccgcgggac tgcggtcgct aggccttggc ggccgtcgcc
     2761 ttggtgcccg tgatccggta gacgtcgaag acgccgtcga tcttgcgcac cgccttgatg
     2821 acgtggtcga ggtggctcgg gtcgcccatc tcgaaggtga acttgctgat cgccacgcga
     2881 tcgcgtgagg tctgcaccga ggcagacagg atgttcacgt gctggtcgga cagcacccgg
     2941 gtgacatccg acagcaggcg gttgcggtcg agcgcctcga cctgaagctg caccaggaac
     3001 acgctggcgg ctgagggcgc ccactccacc tcgatcaacc gatccgggtg cgagagtagg
     3061 gactccgcgt tcgtgcagtc catccggtgg accgagacgc cgctgccgcg ggtgatgaac
     3121 cctatgatcg gatcgccggg caccggggtg caacagcggg ccagcttgac ccacacgtcc
     3181 gcggtgccga cgaccacgac gcccgggtcc cccgagcgac gacgcatcga acgac
//
LOCUS       DASYFY010000485         2328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1453650, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000485 DASYFY010000000
VERSION     DASYFY010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1453650"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VGN19_09795"
     CDS             <1..296
                     /locus_tag="VGN19_09795"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005268466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEV7196222.1"
                     /translation="PLAPTGDAFKQRVWALLCQIPYGQTRSSRDLAVALGDPNLSQAV
                     GSANARNPIGIIIPCHRVIGSDGSLVGYAGGLDRKRFLLSLEEPAEVRDARLF"
     gene            711..2129
                     /locus_tag="VGN19_09800"
     CDS             711..2129
                     /locus_tag="VGN19_09800"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7196223.1"
                     /translation="MTQEATQAPRHRVVVIGSGFGGLFATQALKRADVEVTLIAKTTH
                     HLFQPLLYQVATGILSEGEIAPTTREVLARQRNARVLLGNVTSIDLDARTVTSAVLDR
                     DTVTPYDSLIVAAGAGQSYFGNDQFAQFAPGMKSIDDALELRGRIFSAFEWAELASTP
                     REIERLMTFVVVGAGPTGVEMAGQIAELSRRTLPRDFRSIDTSKARIVLLDAAPTVLA
                     AFGDHLGAKATAKLKELGVDVQLGAKVVGVDATGIDVEDAGGATRRIESVTKVWAAGV
                     QASELGAQLAGQAGASVDRAGRVEVRDDLTLPGHPEVFVVGDLASLKGYPGVAQVAIQ
                     GARYAAATIKRRLAGKPEQGPFEYHDKGSMATISRFSAVASIGKLHFSGFLAWVLWLA
                     VHLVYIIGFKSRITTLLHWSVSFLGKGRSERTVTEQQVFARTAIEKLGDAHRPSLPRV
                     ATDKRPPAQSPAQAREEAGRTL"
     gene            2158..>2328
                     /locus_tag="VGN19_09805"
     CDS             2158..>2328
                     /locus_tag="VGN19_09805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEV7196224.1"
                     /translation="MPLDYPIHERTLANGLRVVVSPDNSVPVVTVNLWVNVGSRHESP
                     GRTGFAHLFEHLM"
BASE COUNT          339 a          836 c          788 g          365 t
ORIGIN      
        1 ttccgctggc acccacgggc gacgccttca agcagcgcgt gtgggcgttg ctgtgccaga
       61 tcccctatgg ccagacccgc agctctcgag atctcgccgt cgcgctgggg gaccccaacc
      121 tcagccaggc ggtcggctcg gcgaacgccc gcaaccccat cggcatcatc atcccgtgcc
      181 accgggtgat cggctcggac ggcagtctgg tgggctacgc ggggggtctg gaccgcaagc
      241 gcttcctcct gtcactcgag gagcccgccg aggtccggga cgcgcgactg ttctgacgcg
      301 cgccggtcct gacctgcgct tttaacgatc ccggtgggcg atttggtgcc gatgccggga
      361 tcgtcctcgt ccgtttggct ccgggtcgtg gacaggtccc caactgcgcc ccggttcacg
      421 gcaggatccc tctcagagaa gggggcgcag gggcgcccag gaggtggcag cgcgcgttga
      481 tcttgctgct gacgcggtcg gcggacccga cgtcgcagcg tgagcgtgct gcccctccgg
      541 acttctctcg accaggggcc gggtctcccc gcaggactcc ccgtggggct ccccgctggt
      601 gatcccgcgc ttagcgcgcc ggtctcgcgg tctcactgcg caggcacgaa accgttcggc
      661 atacctgccg cgttagcctt gttgaccact gcgacaggag agtgttcgac atgacccagg
      721 aagccacgca ggcccctcgc caccgcgtcg tcgtgatcgg ctccgggttc gggggactgt
      781 tcgccaccca ggccctgaag cgcgccgacg tcgaggtgac gctgatcgcc aagacgaccc
      841 accacctgtt ccagccgctg ctctaccagg tcgccaccgg gatcctctcc gagggcgaga
      901 ttgccccgac gacgcgcgag gtcctggcgc ggcagcgcaa cgctcgggtg ctgctgggga
      961 acgtcacctc gatcgacctc gacgcccgca ccgtgacctc cgccgtcctc gaccgcgaca
     1021 ccgtcacgcc gtacgacagc ctcatcgtcg ccgctggcgc cggtcagtcg tacttcggca
     1081 acgaccagtt cgcgcagttc gccccgggga tgaagtccat cgacgatgcc ctggagctgc
     1141 gcggccggat cttcagcgcc ttcgagtggg ccgagctcgc gagcaccccc agggagatcg
     1201 agcggctgat gacgttcgtc gtcgtcggcg ccggcccgac cggggtcgag atggccgggc
     1261 agatcgccga gctgtcgcgc cgcacgctgc cccgcgactt ccgcagcatc gacacgagca
     1321 aggctcgcat cgtgctgctc gacgccgcgc ccacagttct ggccgccttc ggtgaccacc
     1381 tgggcgccaa ggccacggca aagctcaagg agctcggcgt cgacgtccag ctgggtgcca
     1441 aggtggtcgg ggtcgacgcg accgggatcg acgtcgagga tgccggcggc gcgacccgcc
     1501 ggatcgagtc cgtcaccaag gtgtgggcgg ccggggtcca ggcctccgag ctcggggccc
     1561 agctcgccgg gcaggccggt gccagcgtcg accgtgccgg tcgggtcgag gtcagggacg
     1621 acctgacgct tcctgggcat ccggaggtgt tcgtcgtcgg cgatctggcc tcgctcaagg
     1681 gctacccggg ggtggcccag gtggcgatcc aaggcgcccg gtatgccgcc gcgacgatca
     1741 agcgacgcct ggcaggcaag ccggagcagg gcccgttcga gtaccacgac aagggctcca
     1801 tggccacgat ctcgcggttc agcgcggtgg cctcgatcgg caagctgcac ttcagcgggt
     1861 tcctcgcctg ggtgctgtgg ctggcggtcc acctcgtcta catcatcggc ttcaagagcc
     1921 ggatcaccac gctgctgcac tggtccgtga gcttccttgg caagggtcgc tcggagcgca
     1981 ccgtgaccga gcagcaggtc ttcgcccgga cggccatcga gaagctcggc gacgcccacc
     2041 ggccctccct acctcgggtc gccacggaca aacggccgcc ggcgcagtca cccgcgcaag
     2101 cgcgcgagga ggctggacgc accctctgag cgcgggatgg tcacctaggg tgtgggcatg
     2161 cccctggact accccatcca cgagcgcacc ctggccaacg gcctgcgggt cgtggtgtca
     2221 cccgacaaca gcgtgccggt cgtcaccgtc aacctctggg tcaacgtcgg ctcccggcac
     2281 gagtcgcccg gacggacggg attcgcgcat ctcttcgagc acctcatg
//
LOCUS       DASYFY010000486         2134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1138018, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000486 DASYFY010000000
VERSION     DASYFY010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1138018"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..722)
                     /locus_tag="VGN19_09810"
     CDS             complement(57..722)
                     /locus_tag="VGN19_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196225.1"
                     /translation="MSADRPVRVLVVDDQTLFREALTTLLGVRDEVEVVGAVGDGAQA
                     LEAVALLRPDVVLMDLRMPVLDGVATTRRLAVEHPDVRVLVLTTFDGDDEVFPALRAG
                     AVGYLLKDATASRLVEAVQAAALGESVLQPSVATKLIARVSQLPDPPAVPRPQPLVDP
                     LTERELDVLRAVADGLSNREAAALLFLSEGTVKNHVTNVLAKLGVRDRTQAALRARAL
                     GLL"
     gene            complement(719..1804)
                     /locus_tag="VGN19_09815"
     CDS             complement(719..1804)
                     /locus_tag="VGN19_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEV7196226.1"
                     /translation="MNRALPILAVAALLVMLLEAAPGGVVVLPGVAGALFVTWSVVGY
                     RWVLGRGRLAAVGYLVIALALGFVVFDLAGAGVGSTLLLVVVVVQAVVLLPLGWAVVV
                     ALLVPFVHVGMPMADAVRQVVSTGLACAFAFVLAALHLREQQARSELAVANAKLREFG
                     AQAEELATMRERTRVARDIHDGLGHHLTVVGMQVQAARAVLATDPDRAEGLLGQAEDQ
                     TRQALTSVRESVAALREPRPTVPLSDQLRTLAAESATAGLPTTVDVDGGERWLPDDVQ
                     VALYRAAQEGLTNVRKHASAQAARVNLAYLEDSVSLEIVDDGRGLGPGSGFGLVGIRE
                     RVEGLGGSLTIESSPGAGVCVRVDVPG"
     gene            1946..>2134
                     /locus_tag="VGN19_09820"
     CDS             1946..>2134
                     /locus_tag="VGN19_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEV7196227.1"
                     /translation="MTDTLVGVSPLEKKAAKRTAAPDEVQRAAVRELVKAARARGEDL
                     TGPDGLLKTITATVLESAL"
BASE COUNT          389 a          813 c          667 g          265 t
ORIGIN      
        1 ggcggcggcc ggacctgcca gaagtcacaa cccaggtcac ctattcggca tgacccctac
       61 agcaggccga gcgcgcgagc ccgcagcgcc gcctgggtgc ggtcgcggac gccgagcttc
      121 gccaggacgt tcgtcacatg gttcttgacc gtcccctcgg acaggaagag cagggcagca
      181 gcttcacggt tgctcagccc gtcggcgacc gcccgcagca cgtccagctc gcgttcggtc
      241 agcgggtcga ccagcggctg cgggcgcgga acggctggtg ggtcaggcag ctggctcacc
      301 cgagcgatga gcttggtggc gaccgacggt tgcagcacgg actcaccaag ggccgcggcc
      361 tgcacggcct ccaccagccg cgacgccgtg gcgtccttca gcaggtagcc gacggcacca
      421 gcgcgcaagg cggggaagac ctcgtcgtcg ccgtcgaacg tggtcaggac gagcacgcgc
      481 acgtcgggat gttcgaccgc aagccgccgc gtcgtcgcca caccgtcgag gaccggcatc
      541 cgcaggtcca tcagcacgac gtcgggtcgc agcaaggcca ccgcctccaa cgcctgcgcc
      601 ccgtccccca ccgcgccgac cacctcgacc tcgtcgcgga cccccaggag cgtcgtcagc
      661 gcctcacgga acaaggtttg gtcgtcgacg acgagcaccc gcaccgggcg gtcggcgctc
      721 atcccggcac gtcgacgcgg acgcagacgc ccgcgcccgg actcgactcg atcgtcagtg
      781 agccgcccaa accttcgacg cgttcacgga taccgaccag gccaaacccg ctgcccgggc
      841 cgagaccgcg cccgtcatca acgatctcca ggctcaccga gtcctcgagg taggccagat
      901 tcaccctggc cgcctgagcg ctcgcgtgct tgcgaacatt cgtcagaccc tcctgggcgg
      961 cgcggtagag cgctacctgc acatcatcgg gcagccatcg ttcaccgccg tcgacgtcca
     1021 ccgtcgtggg caagccagcc gtcgcactct cggctgccag cgtccgcagc tggtccgaaa
     1081 gtgggaccgt aggtcgcggc tcccgcagcg ccgccaccga ctcccgcacc gacgtcaacg
     1141 cctgccgtgt ctggtcctcc gcctggccga gcaggccttc ggctcgatcg ggatccgtgg
     1201 ccagcaccgc cctcgcggcc tgcacctgca taccgaccac agtcagatgg tgccccagcc
     1261 cgtcgtggat gtcccgcgcg acccgggtac gttcccgcat cgtcgccaac tcctcggcct
     1321 gggcgccgaa ctcacgcagc ttggcgttgg ccacggccag ctccgaccta gcctgctgct
     1381 cacgcagatg cagcgccgcg agaacgaagg cgaaggcaca cgccagtccc gtgctgacca
     1441 cctgccgcac cgcatccgcc atcggcatcc cgacatggac gaacggcacg agcaacgcga
     1501 caacaaccgc ccaacccagc ggaagaagca ccaccgcctg caccaccacc accaccagca
     1561 gcagggtgct gccgacaccc gccccggcaa gatcaaagac cacgaacccg agcgccaggg
     1621 cgatgaccag gtaaccgaca gcggcaagac gtccccggcc cagcacccag cgatagccga
     1681 ccaccgacca agtcacaaac agcgcgccag caacccccgg cagaacaacg accccgccag
     1741 gagctgcctc cagcagcatc accagcaacg cggccaccgc gagaatcggc aacgcccggt
     1801 tcacccgtca actgtcgcac ccccaccccg ccagagccgg tccattcgcg cggcaccatg
     1861 cgaaacatcc agcgggactg atgtccgctg aagggtgttt ctggcctggt acgtcgactg
     1921 ggtcgacggg gaaggctggt ctgcgatgac cgacacactg gtgggcgtga gccctttgga
     1981 gaagaaggcc gcgaagagga ccgccgcgcc cgatgaggtg cagcgcgcgg cggtgcggga
     2041 gctggtgaag gctgcccggg cgcgtggcga ggacttgacc ggcccggacg ggttgttgaa
     2101 gacgatcacc gccacggtct tggagtccgc gctc
//
LOCUS       DASYFY010000487         3847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_349110, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000487 DASYFY010000000
VERSION     DASYFY010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349110"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /locus_tag="VGN19_09825"
     CDS             complement(<1..869)
                     /locus_tag="VGN19_09825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196228.1"
                     /translation="MSGEMVTLLLGAQGGDEECFACLYAVTNPVLERYLRVVSDADPA
                     SLTLTTWSTLIEGISVCVADDDDDWLELAVGTARASALVSATIGSPVTPLPDRIPTVR
                     APADSDPNSDQVDKGVAALRACEPAVAEVLAMGVMAGLGRDSIARITGQEPIDVLALV
                     LDGQTRLTLPLESLIATMQVPGTPAEIRDLPTILPLFAARSHALPTSPAAASEGKPTV
                     VDLLTWDSVAPATSKVVLRRRAQVDLSPRWAGIGAGAAAWTIAVGGVAAAVAMIGVVP
                     AAIHSLFGNGGNGG"
     gene            1045..2142
                     /locus_tag="VGN19_09830"
     CDS             1045..2142
                     /locus_tag="VGN19_09830"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEV7196229.1"
                     /translation="MRVVVMGAGGYVGSRLVPELLAAGHDVVATFTDVTSASRFWWSD
                     QVRAVPMEVLDRESVRAAAAGAHAVVYLVHGLGGEDFSTADRQGAYNAAHAAVRGGAE
                     RIVYLGGLVPAIPERELSTHLRSRLEVEQILTDSGIPTIALRAAMVIGSGSTSFEIMR
                     QLSERMPVQALPTWLHSLVEPVAVTDVVTALVGAVDGQGAVGLVGAASGPERSRSFDV
                     GSGERLPYAALLRLYADRAGLRRVQVRVPLVPKALVSRIAPVLTGAPSGTVRTLVESL
                     DHDMVCRDQEFLARLMPPLHATVPLQDAIDRALVAPAASTHDEGRDILGPLTSDAGWA
                     GGQVSRRDGRPVHHRRGGWSDLLLGPPPPLE"
     gene            complement(2195..2662)
                     /locus_tag="VGN19_09835"
     CDS             complement(2195..2662)
                     /locus_tag="VGN19_09835"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7196230.1"
                     /translation="MTVFSASKRSTATVPFSRAAVWQILTDPGQVARLTPMVRSIQAR
                     GETWVWKLAPIELLGRSIGLSFTERMEFTPNERIVYRHAPVGDERAGVEGTYELADSG
                     TGTRLSIDLGVEVDLPFPRLARPAVEASMHGVIAAMGAGFAHNLDRQLKAARL"
     gene            complement(2659..3768)
                     /locus_tag="VGN19_09840"
     CDS             complement(2659..3768)
                     /locus_tag="VGN19_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEV7196231.1"
                     /translation="MTSHDRSGRTALVTGATGYIGGALVPALIDEGWRVRVLTRNRRR
                     LDGLAWADQVEVVEGDGSEATDVRRAVAGVDVAYYLLHSMDGNGDFVTRDRSLATTFA
                     TAAGQEGVGRVVYLGGLHPRGELSPHLASRVEVGEIFLAGPVPATVLQAGVVIGAGSA
                     SFDMLRHLTERLPAMVAPKWLRNRIQPIAIADVVHYLVGSADLSPEVNRSFDIGGPEV
                     FTYARLMQRYAAAVGLRPRFIVTVPVLTPGLAGLWVGLVTPVPAGIARPLVGSLVHDA
                     VCREEDILEVVGAPPGGRTPFDAAVTSAVRAVDPQAWGRLVTRVGTMAAVALVAVMST
                     AASAAAARRRRGSQCGHASPRGHGKAHHLTRNRVP"
BASE COUNT          595 a         1288 c         1397 g          567 t
ORIGIN      
        1 cccccgttgc ccccgttgcc gaagaggctg tggatggccg cagggacgac gccgatcatg
       61 gccacggccg ccgcgacacc ccccactgcg atggtccaag cggcagcacc ggcaccgatc
      121 cccgcccacc ggggagagag gtcgacctgg gctcttcggc gcagcaccac ctttgaggtg
      181 gccggcgcga cggagtccca ggtgagcagg tccacgactg tcggcttgcc ctcagaggcg
      241 gcagctggac tggtcggaag tgcatgggac cgcgcggcga aaagcgggag gatcgttggg
      301 aggtcacgga tctcggcggg cgtgccgggc acctgcatcg ttgcaatgag gctctccagc
      361 ggcaacgtga gcctggtctg accatcgagg acgagcgcaa gcacgtcgat cggctcttgt
      421 cccgtgatcc tggcgatcga gtctcgcccg agcccggcca tcacgcccat cgcgagaacc
      481 tcggccacag ccggctcaca ggcccgtagc gccgcgacgc ccttgtcgac ctggtcggag
      541 ttcgggtcgg aatcggcggg agcgcggacg gtagggatgc gatcgggcag aggtgtgacg
      601 ggggagccga tggtggcgga aacgagggcg ctcgcgcgtg cggtgccgac tgcgagctcg
      661 agccagtcgt cgtcatcgtc ggcgacgcag accgagatgc cctcgatgag cgtggaccaa
      721 gtggtgaggg tcagtgaagc cgggtcagcg tccgagacca cccgcaggta gcgctcgagg
      781 acggggttgg tcaccgcata caggcaggcg aagcactcct catcgccacc ttgggcgccg
      841 aggaggagcg tgaccatttc ccccgacacg tccccatttt tgcgcgttcg cgacgcgagc
      901 gcctcctccg ttcggccgat ggaggaatcg gacgggccat gggtggggcc ctgtcgcgcc
      961 gggtccaggt cccgccggta ggttgacaag ggcgccgcgg aatccccgct accgccgtca
     1021 accgaccggg gcgaggtgac ctgcgtgcgc gtggtcgtga tgggcgcagg cggttacgtc
     1081 ggcagtcggc tcgtgcccga gcttctggct gccggccacg atgtcgtcgc caccttcacc
     1141 gacgtgacct cggcttcgcg attctggtgg tcagaccagg tgcgggcggt gccgatggag
     1201 gtcctggacc gcgagtcggt gcgcgcagcc gcggctggag ctcacgccgt ggtctacctc
     1261 gtccacgggt tgggtggcga ggacttcagc acagccgacc gtcagggcgc ctacaacgct
     1321 gcgcacgcgg ccgtccgggg tggggccgaa cgcatcgtct acctcggtgg gctggttccg
     1381 gcgatccccg aacgggagct ctcgacgcat ctgcgctcgc gcctggaggt cgagcagatc
     1441 ctcaccgact cgggtatccc cacgatcgcg ctgcgggccg ccatggtcat cggcagcggg
     1501 tcgacgtcgt tcgagatcat gcggcagctc agtgagcgaa tgccggtgca ggcgttgccg
     1561 acctggttgc acagcctggt cgagccggtg gccgtcaccg atgtcgtgac ggccttggtg
     1621 ggtgcggtgg atggccaggg tgccgtgggt ttggtgggcg ccgcgagcgg tccagagcgc
     1681 agccgctcgt ttgacgtggg cagtggcgag cgcctcccgt atgccgcgtt gcttcgcctc
     1741 tatgcggatc gcgcaggcct gcggcgggtt caggtccggg tgccgctggt cccgaaggcc
     1801 ctggtgtccc ggatcgctcc cgtcctgacg ggagccccgt caggcacggt ccggacgctg
     1861 gtggaaagcc tggaccacga catggtctgc cgcgatcagg agttcctcgc caggttgatg
     1921 ccacccctgc acgccactgt gccgctgcag gacgcgattg accgggcgct cgtggcacct
     1981 gcggcgtcga ctcacgacga ggggcgcgac atcctcgggc ctttgacgtc cgacgccggc
     2041 tgggccggcg gccaggtgtc caggcgagat ggccgtccgg tgcaccatcg gcggggtggc
     2101 tggagtgacc tgctcctcgg gccaccgcct ccgctcgagt gaagagggag cgtgggcatc
     2161 ccaacgtgcg agtgatcgcg aacagcccga agagtcaaag gcgcgcggct ttcagctgcc
     2221 gatcgaggtt gtgcgcgaaa ccggcgccca tcgcggcgat gaccccgtgc atggatgcct
     2281 cgacggctgg tcgggccagc ctggggaacg gcagatcgac ctcgacgccg aggtcgatcg
     2341 acaaacgggt cccggtaccc gagtcggcca gctcgtaggt gccttccact ccggcgcgct
     2401 catcgccgac gggcgcgtgg cggtagacga tgcgctcgtt cggcgtgaac tccatccgtt
     2461 ccgtgaagct caggccgata ctgcggccga gcagctcgat cggtgcgagc ttccagaccc
     2521 aggtctcgcc gcgggcctgg atgctgcgca ccatcggggt caggcgggcc acctgaccgg
     2581 ggtcggtcag gatctgccac acggccgcgc ggctgaacgg aaccgttgcg gtggagcgct
     2641 tggaggcaga gaagaccgtc atggcactcg attccgggtg aggtgatggg ctttgccgtg
     2701 cccgcggggt gaggcgtgtc cacactgcga accgcgccga cgtcgggcag ccgcagccga
     2761 cgccgcagtc gacatgacag cgaccagggc cactgctgcc atggtcccga cgcgggtcac
     2821 gagtcgcccc catgcctgcg gatccacggc tcgcaccgcg ctggtcacgg cggcgtcgaa
     2881 tggcgtgcga cccccgggag gggcgccgac gacctcgaga atatcttcct cgcggcatac
     2941 cgcatcgtgc acgaggctgc cgaccagagg gcgggcgatc ccggcaggca ccggcgtcac
     3001 gagcccgacc cacaggccgg ccaggcccgg cgtgaggacc ggcacggtca cgatgaaccg
     3061 cggccggagg ccgacggccg cggcataccg ctgcatcagc cgggcatagg tgaacacctc
     3121 gggtccgccg atgtcgaacg agcggttgac ctcgggggat aggtcggcag agccgaccag
     3181 gtagtggacg acgtcggcga tcgcgatggg ctggatccgg ttgcggagcc acttcggggc
     3241 caccatcgcg gggagtcgct ccgtgaggtg gcgaagcatg tcgaacgagg ccgacccggc
     3301 cccgatcacc accccggcct gcagcacggt ggcgggcacc ggcccggcca ggaagatctc
     3361 gccgacctcg acccgggagg ccaggtgtgg cgacagctct cccctcgggt gcaggccacc
     3421 gaggtacacg acccggccga cgccctcctg gccggcggca gtggcaaagg tcgtcgcgag
     3481 actacggtcg cgggtgacga agtccccgtt tccgtccatg gagtgcagca ggtagtacgc
     3541 gacgtcaacg ccggccaccg cgcgccggac gtcggtcgcc tccgacccgt cgccctcgac
     3601 gacctcgacc tgatcggccc aggcaagccc gtcgagacga cggcggttgc gcgtcaggac
     3661 ccggacgcgc cacccctcgt cgatcagggc aggcaccaag gcgcccccga tgtacccggt
     3721 tgccccggtc accagcgcgg ttcgaccact gcgatcgtgc gaggtcatga actcaccctc
     3781 cgacggacag cacgggtggc agcaggaaca gcatgcccag cgaccacgtg agatggatga
     3841 tgatcgg
//
LOCUS       DASYFY010000488         1521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_297479, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000488 DASYFY010000000
VERSION     DASYFY010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297479"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1413)
                     /locus_tag="VGN19_09845"
     CDS             complement(<1..1413)
                     /locus_tag="VGN19_09845"
                     /inference="COORDINATES: protein motif:HMM:NF014215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEV7196232.1"
                     /translation="MRRAAAALLTSVLAAGGVAALSAPASATGTITPRALWITVKNLG
                     PEHRTCRIDADLYVPAGVDSAHRAPSILATNGFGGTKADQADLAQGMGAQGYVTLSYT
                     GLGFVDKNVCPITLDDREHDGAAASQMLRFLGGDPTIPAVDQATGKPVHVNQVMRDDG
                     VNGTRHDPAVGMVGGSYGGQIQFATAAYEHEHGTNRLDAIVPIITWNDLSYSLDPNNG
                     ALPGGTARSGSVSSNVPGAFKYEWSVFFSGEGFAQGLEDISALGSNPGSFPAYVANKC
                     PNFSTQVCTALTEVATQGYPSQASISFLRHASVASYMGDIKVPTFLAQGEADTLFNLQ
                     ESMATYTKLKAQGTPVSMDWQSWGHSNSTPVAGELDELHPLASYQGRQLVAWFNHYVK
                     RTGPQPPLDFRYFRDWVYAATHNISQAYAVAPSFPVGNRKTYYLSGQDIGGQTDAGKS
                     SGGGSLVTSAASVVPGTSGYT"
BASE COUNT          205 a          480 c          572 g          264 t
ORIGIN      
        1 cgtgtatcca ctggttcccg gcacgacgga cgccgcgctg gtgacgaggc tgccgccccc
       61 gctggacttg ccggcgtcgg tctggccgcc gatgtcctga cccgagaggt agtacgtctt
      121 gcggttgccg accgggaagc tgggcgccac ggcgtaggcc tgggagatgt tgtgcgtggc
      181 ggcgtacacc cagtcccgga agtaccggaa gtccagcggc ggctgggggc cggtgcgctt
      241 gacgtagtgg ttgaaccagg ccaccagctg ccgtccctgg taggaggcga gcgggtggag
      301 ctcgtcgagc tcaccggcga ccggggtgga attgctgtgg ccccacgact gccagtccat
      361 cgagacgggc gtgccctgcg ccttgagctt cgtgtacgtc gccatcgact cctgcaggtt
      421 gaacagggtg tccgcctcgc cctgcgcgag gaaggtcggc accttgatgt cgcccatgta
      481 gctggcgacc gacgcatgcc gcaggaagga gatcgaggcc tggctcgggt aaccctgggt
      541 ggccacctcg gtcagcgcgg tgcacacctg ggtggagaag ttcgggcact tgttggcgac
      601 gtaggcgggg aaactgccgg ggttgctccc gagcgccgag atgtcctcca ggccttgggc
      661 gaaaccctca ccggagaaga agaccgacca ctcgtacttg aaggctcccg ggacgttcga
      721 gctcaccgag ccgctgcgcg ctgtccctcc gggcagggcg ccgttgttcg ggtcgaggga
      781 gtaggagagg tcgttccagg tgatgatcgg gacgatggcg tcgagccggt tcgtgccgtg
      841 ctcgtgctcg taggccgccg tcgcgaactg gatctggccg ccgtaggagc cgccgaccat
      901 tccgacagcg ggatcgtggc gggtgccgtt gacgccgtcg tcgcgcatca cctggttgac
      961 gtgcacaggc ttgccggtgg cctggtcgac cgccgggatc gtcgggtcgc cgcccaggaa
     1021 gcgcagcatc tggctggctg ccgcgccgtc gtgctcccgg tcgtcgagcg tgatcgggca
     1081 gacgttcttg tcgacgaagc cgaggcccgt gtaggagaga gtgacgtatc cctgcgcgcc
     1141 catgccctgg gcgagatcgg cctggtcggc cttggtcccg ccgaacccgt tcgtcgcgag
     1201 gatcgacggc gcccggtgcg cggagtccac acctgcgggg acgtagaggt cggcgtcgat
     1261 gcggcaggtg cggtgctcgg gcccgaggtt cttgaccgtg atccacagtg ctcggggcgt
     1321 gatggtgccc gtggcggagg ccggcgcgct cagcgccgct actccgccgg cggccaacac
     1381 actggtcagc agggcggcgg ctgctcggcg cacggtgggc tcctcgtcgt tgaggccggt
     1441 gttgctcggt cgttgcggca gtgtgaggcc cccggaggag tggcgcatcc tgtgatgcgc
     1501 cccacgtcca cctctcgcgg t
//
LOCUS       DASYFY010000489         5072 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_665226, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000489 DASYFY010000000
VERSION     DASYFY010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5072
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665226"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..200)
                     /locus_tag="VGN19_09850"
     CDS             complement(<1..200)
                     /locus_tag="VGN19_09850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196233.1"
                     /translation="MRRVMAGKKKWVAVVAITVAAAAAIGGWALARPGQSAATTTAIT
                     STAAVGTIRQTVATTGTLAPAQR"
     gene            507..1139
                     /locus_tag="VGN19_09855"
     CDS             507..1139
                     /locus_tag="VGN19_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018134759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7196234.1"
                     /translation="MTDTPISGADDVTVDVATESREDRQARFEREAMPLLDQLYSAAL
                     RTTRNPADAEDLVQETYAKAFAAFHQYRPGTNFKAWMYRILTNTYINTYRKRQREPLK
                     SDASEIEDYQLARAESHTSSGLRSAETEALDHLPDTEVKRALQELPADFRMAVYLADV
                     EGFAYKEIAEIMDTPIGTVMSRLHRGRRQLRELLTEYAAERGFATQGADS"
     gene            1136..1399
                     /gene="rsrA"
                     /locus_tag="VGN19_09860"
     CDS             1136..1399
                     /gene="rsrA"
                     /locus_tag="VGN19_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol system anti-sigma-R factor"
                     /protein_id="HEV7196235.1"
                     /translation="MSTASDPSDCSEVLHRVYEYLDGEMTADDTEKIKHHLDACDPCL
                     KEYDLDQALKALVKRSCACEEAPVELRLQVMARITTLRVELSD"
     gene            2034..3491
                     /locus_tag="VGN19_09865"
     CDS             2034..3491
                     /locus_tag="VGN19_09865"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HD-GYP domain-containing protein"
                     /protein_id="HEV7196236.1"
                     /translation="MNAEARPRNGGSVRYTSIPTIVTVLLVCALAACLLGLSWHAAGP
                     PHDLFALGVLSLLGIASWMLRETDVGSRVQLSFTSIIMLAAAVVVGPFGAGIVGAVST
                     LVTLGHEKITVRMFNVGMFTSIATMGALVYSWTRGVPYAAGVTGAGDLLLRVGGPLLC
                     ADLAQCLTNALVLALILRVAGGVPMRMQTWKLLSTTGPAYVGYSVIGFLFVVLWIPAQ
                     VGWFSAVLVLAPLFVARWAFGQYGDELRAHDRTLRALVTAVETKDPHNAGHSERVAKI
                     SEWLAEALGLGHREIQDIRTAGMLHDIGKVGVPTRLLRPRRDLTDSELVLIADHALGG
                     VDLIQGIDFLKDSVDGVAHHHERFDGLGYPGGLTGPAIPLVAQIVAVADVFDCLTTAR
                     VYRPAHTTEEAVELMKQRSGTQFDPHIVEALTRVLARHEWVPTQPSDDVLASAGVALD
                     HDEPEVSDLFAERADLRAQLRGATPRVAQSVAGRA"
     gene            3488..4801
                     /locus_tag="VGN19_09870"
     CDS             3488..4801
                     /locus_tag="VGN19_09870"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEV7196237.1"
                     /translation="MKGLRRRSLQLQWHIALLAVVLVVGALVTTAVRREFTVLPGSTT
                     LSIALFLMAIALGETARLTILTGRETAPMSTAAALGLALSSLPTAGGGHVGAGAVVTV
                     TSAGMVLGCAVLRLAGAQVGWWDTAARLLGGAVAPILYRDVSFGGRTLLQWEAVWEDN
                     RWLVGVVMVLVGVVSVLVSLTLEAAVRAGREHAPLMPAVVDEIRTTLGLATALVTSGA
                     LIALAEFAVGIAALPLFLFPLLLTYFAVQRFAKVRMTYRQTIGALSSLTERAGYTVPD
                     HAERVTRTSVSIGRDLGMGQRELTDLEYAALLHDLGQVALREPIPRGATVMAAPADQQ
                     RIAHDGAEIVRSTGVLDNVAAILEAQTTPYRQVREFGQDLPLASRIIKVANAYDDMSG
                     PYGEDDERAMERIHLGLGYEYDPQVVDSLTRVLQRRRRSAPTPLS"
     gene            complement(4837..>5072)
                     /locus_tag="VGN19_09875"
     CDS             complement(4837..>5072)
                     /locus_tag="VGN19_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HEV7196238.1"
                     /translation="FGGSLNPIPAIGDLGYIAMTAFVINILVAVALSLVFRALNVDAG
                     HDETIKGDYFADAGDPRVEKNLVLDTHLTTGAP"
BASE COUNT          746 a         1710 c         1736 g          880 t
ORIGIN      
        1 cgctgggccg gtgccaaggt tccggtcgtc gccactgtct ggcggatcgt gcccaccgcc
       61 gcagtgctgg tgatcgctgt cgtcgtcgcg gcgctctgcc ccgggcgagc caacgcccag
      121 cccccgatgg ctgcagcggc cgccacggtg atggcaacca ccgccaccca cttcttcttg
      181 ccggccatca cccgtcgcat tcccactcct gtccaatcgt cggcctcaga gtgacccccc
      241 ttgctggaca attggtgacc tgatgctgtg ccccgcctgt gaaaccggcg cccgtccggc
      301 tatgagccgc gcgggaatga gccacgcgcg ctgacggttg tcaccctcgg accccgctga
      361 cgacgaagga ggagcgcgtg ccagtgctga ccaccccgct gaccacctcg cgacccgccc
      421 ggtcccaagg cgtgaagctt ggcttgggcg ctgtggcgcc ggacaacgga cagcgttctc
      481 aggctggcgg gctaggctgg agggtaatga ctgacacccc catctccgga gccgacgacg
      541 tgactgtcga tgtggcgacc gagtctcgcg aggaccgcca agcccggttc gagcgcgagg
      601 ccatgcccct gctggaccag ctctactcgg cagcgttgcg gaccacccgc aacccggccg
      661 atgccgagga cctcgtccag gagacgtacg cgaaggcgtt tgccgcgttc caccagtacc
      721 ggcccggcac caacttcaag gcgtggatgt accgcatcct caccaacacg tacatcaaca
      781 cctatcgcaa gcggcagcgc gagcctctga agtccgatgc gtcggagatc gaggactacc
      841 agctggcgcg ggccgagtcc cacacctcgt ccgggctgcg ctcggccgag accgaggcct
      901 tggaccacct gcctgacacc gaggtgaagc gggccctgca ggagctgccc gccgacttcc
      961 ggatggcggt ctacctcgcg gatgtcgagg gctttgccta caaggagatc gcggagatca
     1021 tggacacccc gatcgggacc gtgatgtccc ggttgcaccg ggggcggcgc cagctccgcg
     1081 agcttctcac cgagtatgcc gccgagcgcg gcttcgcaac ccaaggggcg gactcatgag
     1141 cacggccagc gacccgtcgg actgttcgga ggttcttcac cgcgtctacg agtacctcga
     1201 tggcgagatg acggccgacg acacggagaa gatcaagcac cacctggacg cgtgcgaccc
     1261 ctgccttaag gagtacgacc tcgaccaggc gctcaaggcg ctggtgaagc gctcatgcgc
     1321 ctgcgaggag gctcctgtgg agctgcgcct gcaggtcatg gcgcggatca cgacgttgcg
     1381 agtcgagctc agcgactgag ctgacacacc gaaggggcgc ggaccaggtc tgatgaccgg
     1441 tccgcgcccc ttcgtcgtgc gtcgactgtg ggctcaggcg ttgggcttgc ggccgtggtt
     1501 ggccgcgttg cccttgcgcg agcgacgctt gcgggcgcgc ttgctcatgg gtgtcactcc
     1561 gtcggtttgg gtgtggcgca caaggcgctc gggtccgcag ccattctcgc acagcccgac
     1621 tcgtgctcag aacgccgcag tttgcgccgg aattgggttt gatggcgcca aagtcgtgtg
     1681 gttgcgccca gtggtcgttt gtgctctggg tgttcattaa tacctgtaat tcgggccgag
     1741 gacctcctca accttcaaga cttggtcaag aactgtccag attttacgaa tgcctgaccg
     1801 acaacctgca ttattggggt gctgccgagc ggcacccctg accattcgga gcgttactag
     1861 accccaatgc gacgccgccg cgtcgtggga gtcagaagga gtcgtgccat gaaggcgaac
     1921 accaccatca tcgtccccgc ccaggagctc tccgctggcc cgcgcacgac cagctggggc
     1981 tggggcagct gacctcagtg tcggaatgcg ttcgcgccga ctagatttct gacgtgaacg
     2041 cagaggcgcg accgcgcaac ggtggctcgg ttcgatacac gagtatcccc accatcgtca
     2101 ccgtgctgct ggtctgcgcg ctggccgcgt gcctgctggg tctcagctgg cacgcggccg
     2161 gcccgcctca cgacctgttc gccctggggg tcttgagcct cctgggcatc gcgagctgga
     2221 tgcttcgcga gaccgatgtc ggttcccgcg tccagctctc cttcacgagc atcatcatgt
     2281 tggcggccgc ggtggtcgtc ggccctttcg gggccggcat cgtcggggcc gtttcgacgt
     2341 tggtcaccct cggtcacgag aagatcaccg tgcgaatgtt caacgtgggc atgttcacgt
     2401 ccatcgccac catgggtgcg ctggtgtact cgtggacgcg gggagttccc tatgccgccg
     2461 gggtcaccgg cgctggggac ctgttgctca gagttggggg tccgctgctc tgcgccgacc
     2521 tcgcgcagtg tctgaccaat gcgctggtgc tggcgctcat ccttcgtgtg gcaggcgggg
     2581 tgccgatgcg gatgcagacc tggaagctgc tgagcaccac cggccctgcg tacgtgggat
     2641 acagcgttat cggcttcctg ttcgtcgtcc tctggatccc ggcccaggtg ggttggttca
     2701 gcgccgttct ggtgctcgcc ccgctgttcg tcgcccgatg ggccttcggg cagtacggcg
     2761 acgagctgcg cgcccacgac cggaccctgc gcgcgctggt gaccgcggtc gagaccaagg
     2821 acccgcacaa cgcgggccac agcgagcggg tcgccaagat ctccgaatgg ctggccgagg
     2881 cgctgggtct ggggcaccgc gagatccagg acatcaggac cgccggcatg ttgcacgaca
     2941 tcggcaaggt gggcgtgccg acgcgcctgc tgaggccccg ccgcgacctg actgacagcg
     3001 agctcgtcct cattgcggac catgccctcg gcggcgtcga cctcatccag ggcatcgact
     3061 tcctcaagga ctcggtcgac ggggtggcgc accaccacga acgcttcgac gggctcggct
     3121 acccgggcgg cctgaccggt cccgcaattc cactggtggc acagatcgtg gccgtcgccg
     3181 atgtcttcga ctgcttgacc accgctcggg tgtaccgacc ggcccacacc acggaggagg
     3241 ctgtcgagct gatgaagcag cgctccggca ctcagttcga cccccacatc gtggaggccc
     3301 tgacccgggt cctggcccgt cacgaatggg tgcccaccca gccttcggac gacgtgctgg
     3361 cctctgcggg cgtcgccctc gaccacgacg agcctgaggt ctccgacctg ttcgccgagc
     3421 gggccgacct gcgcgcacag ctgcgcggcg cgactccccg cgtggctcag agcgtggctg
     3481 gtcgcgcgtg aagggcctgc gccgccggtc gctccagctg cagtggcaca ttgcccttct
     3541 cgcggtggtg ctggtcgtcg gggccctggt cacgacggcg gttcgccgcg agttcacggt
     3601 cctgcccggc tcgaccacgc tcagcatcgc gctgttcctc atggccatcg cgctgggcga
     3661 gaccgcccgc ctgacgatcc ttaccggacg tgagaccgcg ccgatgtcga ccgctgccgc
     3721 gcttggtctg gcgctgtcgt cactgcccac ggccgggggt ggccatgttg gggctggagc
     3781 ggtcgtcacg gtgaccagcg cgggcatggt ccttggctgc gccgtcctgc gactggccgg
     3841 cgcgcaggtg ggctggtggg acacggcggc ccgactgctc ggcggtgccg tggcgccgat
     3901 cctctatcgc gacgtgagct tcggcggccg caccctgctg cagtgggagg cggtctggga
     3961 ggacaaccgc tggctcgtcg gcgtggtcat ggtgctcgtc ggcgtcgtct cggtgctggt
     4021 gtcgctcact ctcgaggcgg cggttcgggc gggtcgcgag cacgcgccgc tgatgcctgc
     4081 ggtggtcgac gagatcagga cgacgctggg tctggccacc gccttggtga cctcgggcgc
     4141 gctgatcgcg ctcgccgagt tcgcggtcgg catcgctgcc ctgccgttgt tcttgttccc
     4201 gctgctgttg acgtacttcg cggtgcagcg gttcgccaag gtccggatga cctatcggca
     4261 gacgatcggt gcgctgtcct cgctgaccga gcgtgcgggt tacaccgtgc ccgaccatgc
     4321 ggagcgggtc acccgcacgt cggtgtcgat cgggcgtgac ctgggcatgg ggcagcgcga
     4381 gctgacagac ctggagtatg ccgcgctgct gcacgacctg ggtcaggtcg cgttgcgtga
     4441 gccgatcccg cggggtgcca cggtgatggc ggctccggcc gaccagcagc ggatcgccca
     4501 cgacggcgcg gagatcgtgc gcagcaccgg cgtgctggac aacgtcgccg cgatcctcga
     4561 ggcccagacg acgccctatc ggcaggtgcg cgagttcggc caagacctgc cgctggcgag
     4621 ccgaatcatc aaggtggcca acgcctacga cgacatgtcc ggtccgtacg gggaggacga
     4681 cgagcgtgcg atggagcgga tccacctcgg gctcgggtac gagtacgacc cgcaggtcgt
     4741 ggactccctg acccgggtgc tgcagcggcg ccgacgcagt gcgccgacgc cgctgagctg
     4801 acctgaactg aggtcagccg acctaaccgc gacccgtcac ggcgccccgg tggtgaggtg
     4861 ggtatccagg acgaggttct tctcgacgcg ggggtcgccc gcgtcggcga agtagtcacc
     4921 cttgatggtc tcgtcgtggc cggcgtcgac gttgagggcc cggaacacca gcgacagcgc
     4981 caccgcgacg aggatgttga tgacgaacgc ggtcatcgcg atgtagccga ggtcgccgat
     5041 cgcggggatc gggttgagcg acccgccgaa gt
//
LOCUS       DASYFY010000490         3670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1716104, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000490 DASYFY010000000
VERSION     DASYFY010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1716104"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VGN19_09880"
     CDS             complement(<1..234)
                     /locus_tag="VGN19_09880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196239.1"
                     /translation="MSDKDVDAQFADIVAHWDEVPSLPDPPRAPAPEARPNPVNPPPT
                     HPFVVWRGADQDPSARDFTAPAEPVEPEEGTEPR"
     gene            complement(274..1011)
                     /locus_tag="VGN19_09885"
     CDS             complement(274..1011)
                     /locus_tag="VGN19_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7196240.1"
                     /translation="MIPGAEPFSHDGSQVGVLLSHGFTGSPKSVRPWAEHLASAGYTV
                     RLPRLPGHGTTWQEMNRTRWEDWYAVLDREFRELHEQCDRVFVGGLSMGGTLVTRLAQ
                     VHGPRVSGLMLVNPAYTVKDPRLKALPVLQALVPSLPGIGNDIKKPGQDEGCYDRIPL
                     KALYSQTKLWAEVVRDLPEVTQPVILWHSPEDHVVPPASSELLLARISSTDVAENLLR
                     DSYHVATLDNDAPRIFEESVTFIERLS"
     gene            1135..2031
                     /locus_tag="VGN19_09890"
     CDS             1135..2031
                     /locus_tag="VGN19_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013600637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEV7196241.1"
                     /translation="MFYWVLKTVVLGPILRLLFRPWVEGEENIPDEGAAIFASNHLSF
                     SDSIFLPLSVPRRMTFLAKSDYFTGRGIKGRLTAAFFRGVGQLPIDRSGGRAGEAALR
                     SGLRVLRRGELLGIYPEGTRSPDGRLYRGRTGVARMALEGGVKVLPVAMIGTDKAQPT
                     GKKIPKLMRIGIKIGKPLDFSRYDGMEDDRFVLRSITDEIMYELMLLSGQEYVDMYAT
                     SMKDRILAAAKTKARELQEAALPGSAAKELEDALDAGDDEPKSGRRASVDDATSDIGA
                     LDDEQDGAPAATELPPGRRAAS"
     gene            2063..2593
                     /locus_tag="VGN19_09895"
     CDS             2063..2593
                     /locus_tag="VGN19_09895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEV7196242.1"
                     /translation="MDITELILRQHADQRSMFAALDEWPRDDAAGLASLWRRLEIMLE
                     VHAQAEEQFFYPELTRLGTGGGDADSVEGEVKDAIKDHNEIRDAIGKVAAADPGSRDW
                     FAAVLEVNVANGDHMAEEERQDLTDFRRHATLDLRHRLAVDFLRFEAEHWATGVPAID
                     KDPDEYVRQNEGGDQR"
     gene            2660..>3670
                     /locus_tag="VGN19_09900"
     CDS             2660..>3670
                     /locus_tag="VGN19_09900"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEV7196243.1"
                     /translation="MSTTHDDALASLAAGTDLPAVQQPEWPDAARLQSAVAELASYPP
                     LVFAGECDVLKTRMAAAARGEAFVLQGGDCAETFAAATADNIRDRVKTILQMAAVLTY
                     GASVPVVKVGRMAGQYAKPRSSGSETREGVSLPAYRGDMVNDFEFTPQSRIPDPQRLV
                     RAYHASAATLNLVRAFTHGGFADLRHVHDWNKGFVANAANSRYERLAKDIDKAMKFML
                     ACGADFEAMKSTEFFSAHEALLLDYERPLTRVDSRTGQLYDTSGHFIWVGERTRDLDG
                     AHIDFVSKVLNPIGIKLSAKAEVDDVLRLIDKVDPHREPGRLTFITRMGAKTVRDALP
                     MLV"
BASE COUNT          599 a         1218 c         1286 g          567 t
ORIGIN      
        1 gcggggttcg gtcccttcct cgggctcgac aggctctgcc ggcgcggtga agtcgcgggc
       61 gctgggatcc tggtctgctc cccgccacac gacgaagggg tgggtcgggg gtgggttgac
      121 cgggttcgga cgcgcctcgg gggccggagc acgcggcggg tcgggcaggc tcggaacctc
      181 gtcccagtgg gccacgatgt cggcgaactg agcgtccacg tccttgtcgc tcatgggatc
      241 cctcggattc tcgtagccga cgaccagcgg tcgctagctc aaccgctcga tgaaggtcac
      301 cgactcttca aagatacgcg gggcgtcgtt gtccagggta gccacgtgat agctgtcgcg
      361 aagcagattc tcggccacat cggtgctgct gatccgggcg aggagcagct cggagctcgc
      421 gggtggcacc acgtggtcct cgggggagtg ccagaggatc accggctgcg tcacctcggg
      481 gagatcgcgc acgacctcgg cccacagctt ggtctgggag tacagggcct tgagggggat
      541 gcggtcgtag cacccctcgt cctggccggg cttcttgatg tcgttgccga tgccggggag
      601 tgagggcacc agggcctgaa gcaccggcag tgccttcaac cgtgggtcct tcacggtgta
      661 tgccgggttg accagcatca gtcccgagac gcgtgggcca tgcacctggg ccagccgggt
      721 cacgagggtg cctcccatgg acaggccgcc gacgaagacc cggtcgcact gctcgtgtag
      781 ctcgcggaat tcccggtcga gcacggcata ccagtcctcc caccgggtgc ggttcatctc
      841 ctgccaggtc gtgccgtgac cggggaggcg cggcaggcgc acggtgtagc cggctgacgc
      901 gagatgttcg gcccacgggc gcacgctttt ggggctgccc gtgaagccgt gtgagagcag
      961 caccccgacc tgcgagccat cgtgggagaa gggttcggca ccagggatca cggacaacag
     1021 aactcctgcg aggcgggaag gtgcgagcgt cgtgcggacc ggcgcatcct cgcacggggc
     1081 ggccggtgcg tcgagagtgc cgtagagttc accgcgtcac agggaggtgt gctggtgttc
     1141 tactgggtgc tcaagacagt cgtgcttggc ccgatcctca ggctgctctt tcgcccgtgg
     1201 gtcgaggggg aggagaacat tcctgacgag ggggctgcga tcttcgccag caaccacctc
     1261 tcgttctcgg actcgatctt tctgcctctg tctgtcccac ggcggatgac gttcctcgcc
     1321 aagtccgact acttcaccgg ccgggggatc aagggacggc tgaccgccgc gttcttccgc
     1381 ggcgtgggcc agctgccgat cgaccgctcg ggcggccggg ccggcgaggc cgcccttcgc
     1441 tcgggcctaa gggtcctgcg tcgcggcgag ctgcttggca tctatcccga aggcacgcgg
     1501 tcgcccgatg gacggctgta ccgcggccgc accggggttg cgcggatggc gctcgagggt
     1561 ggggtgaagg tgctgcccgt tgccatgatc ggcacggaca aggctcagcc gaccggcaag
     1621 aagatcccca agctcatgcg gatcgggatc aagatcggca agcctctgga cttctcccgg
     1681 tacgacggca tggaggacga ccggttcgtc ctgcgctcca tcaccgacga gatcatgtac
     1741 gagctgatgc tgctgtcggg ccaggagtac gtcgacatgt acgccacctc gatgaaggac
     1801 cgcatcctcg cggccgccaa gaccaaggcg cgcgagctgc aagaggccgc gctgcccgga
     1861 tcggccgcca aggagctcga ggatgcgctc gacgccgggg acgacgagcc caagagtggg
     1921 cgtcgggcgt cggtcgacga cgcgacgtcc gacatcggcg cgctcgatga cgagcaggac
     1981 ggcgcgcccg ccgcgaccga gctgcccccc ggtcgacgcg ccgccagctg agtcagctga
     2041 ctcgcgaaga gggaggaacc ccgtggacat cactgagctc atcctgcgcc agcatgccga
     2101 ccagcgaagc atgttcgctg cactcgacga gtggccacga gacgacgctg ccgggcttgc
     2161 cagtctctgg cgtcgcctcg agatcatgct cgaggtgcac gcccaggcag aggagcagtt
     2221 cttctatccg gagctgacgc gcctcggtac cggaggcggc gacgctgaca gcgtcgaggg
     2281 tgaggtcaag gacgccatca aggaccacaa cgagatccgc gatgccatcg ggaaggtcgc
     2341 agccgcagat ccggggtcca gggactggtt cgccgcggtc ctggaggtca acgtcgccaa
     2401 cggcgatcac atggccgagg aggagcgcca ggatctcacc gactttcgcc ggcacgccac
     2461 gctcgacctg cgccaccgac tggcagtcga cttcctgcgg ttcgaggccg agcactgggc
     2521 gaccggagtc ccggcgatcg acaaggatcc cgacgagtac gtccggcaga acgaaggcgg
     2581 cgaccagcgc tagggcgggg cgctgcccgg catccgggcc agccgacccg gcgtggcgcc
     2641 ggacacctat ccttgtgcgg tgagcaccac gcacgatgac gccctcgcca gcctcgccgc
     2701 tggcaccgac ctgccggccg tccagcagcc cgaatggccg gacgccgctc gcctgcagag
     2761 tgccgtcgct gagctcgcgt cgtatccgcc gctggtgttc gccggggagt gcgacgtcct
     2821 caagacccgg atggccgccg ccgcccgcgg tgaggcgttc gtcctgcagg gcggcgactg
     2881 cgccgagacg tttgcggccg ccacggccga caacatccgt gaccgcgtca agacgatcct
     2941 gcagatggcg gcggtgctga cctacggcgc ctccgtgccg gtggtcaagg tcggccgcat
     3001 ggccggccag tacgcgaagc cgcgcagcag cgggtccgag acgcgcgagg gtgtgagcct
     3061 gccggcatac cgcggggaca tggtcaacga cttcgagttc acgccccagt cccgcatccc
     3121 ggacccgcag cggctggtcc gggcgtacca cgcgagcgcc gccacgctga acctcgtccg
     3181 ggcgttcacg cacggcggtt tcgcggacct gcgtcatgtc cacgactgga acaagggctt
     3241 cgtggccaac gccgccaaca gccggtacga gcgactcgcc aaggacatcg acaaggcgat
     3301 gaagttcatg ctggcgtgtg gtgctgactt cgaggccatg aagtcgacgg agttcttctc
     3361 ggctcacgag gcgctcctgc tggactacga gcgcccgctg acgcgcgtcg acagccggac
     3421 cgggcagctc tacgacacca gcggtcactt catctgggtc ggcgagcgga ccagggacct
     3481 cgacggtgcg cacatcgact tcgtctccaa ggtcctcaac cccatcggca tcaagctgtc
     3541 ggccaaggcc gaggtcgacg acgtgctgcg gctcatcgac aaggtggatc cccaccgcga
     3601 gcccggccgg ctgaccttca tcacccggat gggggccaag acagttcggg acgcactccc
     3661 gatgctcgtg
//
LOCUS       DASYFY010000491         2545 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1664583, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000491 DASYFY010000000
VERSION     DASYFY010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1664583"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VGN19_09905"
     CDS             <1..513
                     /locus_tag="VGN19_09905"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEV7196244.1"
                     /translation="VLSQFLLRSGNVLAHPENARLLLEQGELVGVFPEGVKGAAKAYR
                     ERYQVKRFGRGGFVQVAIRAGAPIVPVAIVGAEEVHPVVLDLPAVGRLFGVPTLPITP
                     TFPLLGLGGLVPLPSKWYIAFGRPIDTASLGPEAAGDPGLVLDIAEDVRGWIQGQVND
                     MLGRRTTPFF"
     gene            complement(510..1022)
                     /locus_tag="VGN19_09910"
     CDS             complement(510..1022)
                     /locus_tag="VGN19_09910"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEV7196245.1"
                     /translation="MVRWPFFEPTPLSDVMESLLQEERRRRGGRQGAPMPVNVYQEEG
                     SVVVQAAMPGIDPDDVDIHCSDGLLTIRAQTRVADRTYLHQEIQPVEWMRQLALPPDC
                     RFEAAEASADNGILTIGIPQERPRAPEKIRIQVTRKGGPAQTIEAKPGSGYSEVRPRR
                     KPGSKGTPKP"
     gene            1058..2149
                     /locus_tag="VGN19_09915"
     CDS             1058..2149
                     /locus_tag="VGN19_09915"
                     /inference="COORDINATES: protein motif:HMM:NF013847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HEV7196246.1"
                     /translation="MGYESTHTEVIGSLLRPDELKEARKRLDAGEIEPAEFKAIEDRA
                     VDAALKLQDDAGIDVITDGEERRSSFYGHLVDANEGFDALGGWAIPFRDESGEELVLR
                     RPVVVDKLLPKRHMCAEEWTYVRARTQHPAKVTVLSAMQAAAYYDPERSRDAYPTRDE
                     YLADVVDITRREISELARLGCTYVQVDAPQYAGLLDPAMREGHRQRGNDPEQLLDRCI
                     ELDNAMIDGFPGMTFGMHICRGNNQSKFYAQGDYGPISRLFNRTRFNRFLLEYDDQRS
                     GGFEPLRSVPEDRVVVLGLVTTKKPQLEPEEELRARIAEAARMLPLDRLALSPQCGFA
                     STMEGNHVTPEDQRKKLELVVRVAQQVWS"
     gene            2154..>2545
                     /locus_tag="VGN19_09920"
     CDS             2154..>2545
                     /locus_tag="VGN19_09920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196247.1"
                     /translation="MKVPVLVETGTKRTFAIALDWPGWARVGKTEDAALDALAAYAPR
                     YAEVARRAGLALPATDVTLDVVERVKGGGSTDFGVPGEVVEHDRQPLNGESRARMLGL
                     VGGAWAVFDEVVASAPKELRKGPRGGGR"
BASE COUNT          389 a          847 c          917 g          392 t
ORIGIN      
        1 gtgctgtctc agttcctgct cagaagcggg aacgtcctgg cccatcccga gaacgcccgg
       61 ctgctgctcg aacagggcga gctggtgggt gtgtttccgg agggcgtcaa gggcgcggcc
      121 aaggcctatc gcgagcggta ccaggtgaag cgtttcggac gcggcgggtt cgtccaggtg
      181 gcgatccgag ccggtgctcc gatcgtcccg gtggcgatcg tgggagccga agaggtgcac
      241 ccggtcgtac ttgacctgcc cgcggtgggc cgcctgttcg gcgtgccgac cctgcccatc
      301 acacccacct tcccgctgct tggcctgggc ggcctggtcc ccctgccgag caagtggtac
      361 atcgccttcg ggcgacccat cgacaccgcc tcgctcggcc ccgaggccgc cggcgacccg
      421 ggcctcgtgc tcgacatcgc cgaggatgtg cggggctgga tccagggcca ggtcaacgac
      481 atgctcggcc gccggaccac gcccttcttc tagggcttgg gggtcccttt cgagcccggc
      541 ttgcgccggg gcctgacctc ggagtagccg cttccaggct tggcctcgat ggtctgggca
      601 ggacccccct tgcgggtgac ctggatgcga atcttctcgg gcgcccgggg gcgctcctgc
      661 ggaatcccga tggtgaggat gccgttgtca gcgctcgcct ccgccgcctc gaaccggcag
      721 tcgggcggca gcgccagctg gcgcatccac tcgacgggtt ggatctcctg gtggaggtag
      781 gtgcggtcgg cgaccctggt ctgcgcccgg atcgtcagca ggccgtcgct gcagtggatg
      841 tcgacgtcgt ccgggtcaat gccgggcatg gcggcctgga cgacgactga accctcttcc
      901 tggtagacgt tgacgggcat cggcgcgccc tggcgaccgc cgcggcggcg ccgctcctcc
      961 tgcaggaggg actccatcac atcgctcagc ggggtgggtt cgaagaatgg ccagcgcacc
     1021 atgggtctcg atggtagcgc gctccataat cggctcgatg ggttacgaaa gcacgcacac
     1081 cgaggtgatc ggcagtctgc tgcggccgga cgagctgaag gaggctcgca agcgcctcga
     1141 cgcgggagag atcgagcctg cggagttcaa ggccatcgag gaccgggcgg tggacgcggc
     1201 cctgaagctc caggacgacg cgggcatcga cgtcatcacc gacggcgagg agcgccggtc
     1261 gtccttctac ggtcacctgg tcgatgccaa cgagggtttc gacgcccttg gcggatgggc
     1321 gatcccgttc cgcgacgaat cgggcgagga gctcgtactg cgccggccgg tggtggtcga
     1381 caagctcctg ccgaagcgtc acatgtgtgc cgaggagtgg acgtacgtgc gcgcgcgcac
     1441 gcagcacccg gccaaggtca cggtgctgag cgccatgcag gccgccgcgt actacgaccc
     1501 cgaacgatcg cgcgacgcgt accccacccg cgacgagtac ctggccgacg tggtcgacat
     1561 cacgcgccgc gagatctcgg agctggcgcg gctgggctgc acctacgtcc aggtcgacgc
     1621 gccccagtac gccggtctgc tcgaccccgc gatgcgcgag ggccaccgcc agcggggcaa
     1681 cgaccccgag cagctgctcg accgctgcat cgagctcgac aacgccatga tcgacggctt
     1741 tcccggcatg acgttcggga tgcacatctg ccgcggcaac aaccagagca agttctatgc
     1801 ccagggcgac tacggcccga tctcccggct cttcaacagg acgcgcttca accggttcct
     1861 gctggagtac gacgaccagc gttcgggcgg ctttgaaccc ctgcggtcag tccctgagga
     1921 ccgggtcgtg gtgctcggcc tggtgaccac caagaagccg cagctggagc ccgaagagga
     1981 gctgcgggcc cgcatcgcgg aggcggcccg gatgctgccg ctcgaccgcc tggccctcag
     2041 cccgcagtgc gggtttgcct cgaccatgga gggcaaccac gtgacgccag aggaccagcg
     2101 aaagaagctc gagctggtgg tcagggtcgc ccagcaggtg tggtcctgag cgcgtgaagg
     2161 tgcccgtcct ggtcgaaacc gggaccaagc gaaccttcgc gatcgccctc gactggccgg
     2221 gctgggcacg cgtcggaaag accgaggacg cggcgctgga cgcgctcgcg gcctacgcgc
     2281 cgcggtatgc cgaggtggcg cgacgggctg gcctcgccct gccggcgacg gacgtgacgt
     2341 tggatgtcgt cgagcgtgtg aagggcggcg ggagcaccga tttcggggtc cctggagagg
     2401 tcgtcgaaca cgaccgccag cccctgaacg gagagtcccg agcccggatg ctcgggctgg
     2461 tcgggggagc ctgggcggtc ttcgacgagg tggttgcgag cgcgccgaag gagctgagga
     2521 agggaccccg cggcggtggt cgcga
//
LOCUS       DASYFY010000492         1877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_349342, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000492 DASYFY010000000
VERSION     DASYFY010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349342"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..1474)
                     /locus_tag="VGN19_09925"
     CDS             complement(230..1474)
                     /locus_tag="VGN19_09925"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEV7196248.1"
                     /translation="MTIGVIGLGYVGLPLAVEFAEAGEQVIAVDVDDAKVAAIRAGRS
                     YVEDVPSERLSAVLDRIDAQTDYAPLAGADAVLICVPTPLTSNREPDLGPLLGASRQL
                     AEFVQTGQLIVLESTSYPGTTREQVQPLLEANGLRVGEDVYLAFSPERVDPGRTDYTL
                     RNTPKLVGGITPECSDRAVALYSSVCDHVIRVSTPEAAEMAKLLENIFRSVNIALVNE
                     LAILADRMGIDIWEVIDAAATKPYGFMRFDPGPGMGGHCLPVDPFYLTWRAREFHMST
                     EFIELAGKINQQMPYYCVERIERALNDAAKPVNGSRIAILGVSYKGGVGDIRESPALR
                     IMELLGERGAVLSYHDPYVPALPELGLQSTDLDAISSADAVVLVTAHPHIDHLALAEA
                     SQLFVDLRGVTRRLTTGDVVRL"
     gene            1566..1832
                     /gene="ffs"
                     /locus_tag="VGN19_09930"
     ncRNA           1566..1832
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VGN19_09930"
                     /product="signal recognition particle sRNA large type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01854"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01854"
BASE COUNT          299 a          607 c          673 g          298 t
ORIGIN      
        1 cgccgaggtt gtacgagtac cacccgtcgc cggtctggcc gaacgatccg gcctgaccct
       61 cggcctgcgg ggcgggctgc gtcaccacgt ggccggtggc cgggttggtg acggtgtcgt
      121 cgacctccga cccgttggtc gagtgctgga tcccgttgta gtagtcgaag taccccaggc
      181 cgcgaacgcc cgtctggcca ttccaggcac aacattcccg ggagacccac tagagccgga
      241 ccacgtctcc ggtggtgagt cggcgagtga ccccgcgcag gtccacgaac agctgcgagg
      301 cctcggccag cgccaggtgg tcgatgtgcg ggtgggcggt gaccaggacg acggcgtcgg
      361 cggacgagat ggcgtccaga tcggtgctct ggagaccgag ctcgggcagc gcggggacgt
      421 aggggtcgtg gtaggagagc accgcgcccc gctcgcccag cagctccatg atgcgcaggg
      481 cgggggactc gcgaatgtcc ccgacaccgc ccttgtaact cacgcccagg atcgcgatgc
      541 gcgagccgtt gaccggcttg gcggcgtcgt tgagcgctcg ctcgatgcgc tcgacgcagt
      601 agtagggcat ctgctggttg atcttgccgg cgagctcgat gaactcggtg gacatgtgga
      661 actcccgggc gcgccaggtg aggtagaagg ggtcgacggg gaggcagtgg ccgcccatgc
      721 cgggcccggg gtcaaagcgc atgaagccgt agggcttggt ggcggcggcg tcgatgacct
      781 cccagatgtc gatccccatg cggtcggcca ggatcgccag ctcgttgacc agcgcgatgt
      841 tgaccgagcg gaagatgttc tccaggagct tggccatctc ggcggcctcg ggtgtcgaga
      901 cgcggatcac gtggtcacac acgctcgagt acagggccac cgcgcgatcg ctgcactcgg
      961 gggtgatccc acccaccagc ttcggggtgt tgcgcagcgt gtagtcggtg cggcccgggt
     1021 cgacgcgctc gggggagaag gcgaggtata cgtcctcgcc gacccgcagg ccattggcct
     1081 cgagcagcgg ctgcacctgc tcgcgcgtgg tccccgggta gctggtggac tccagcacga
     1141 tgagctggcc ggtctggacg aactcggcca gttgccgcga cgctccgagc agcggcccga
     1201 gatcgggctc gcggttggac gtcagtggtg tcggcacgca gatgagcacc gcgtcggccc
     1261 ccgccagcgg cgcatagtcg gtctgggcgt cgatccggtc cagcacggcc gacagtcgct
     1321 cggacgggac gtcctccacg taggacctgc cggcgcggat cgcggcgacc ttggcatcgt
     1381 ccacgtcgac ggcgatcacc tgctcgcccg cctcggcgaa ctccacggcc aacggcaggc
     1441 ccacgtaccc gagtccgatc actccgatcg tcatgggcgc tgacgataca acgcatcctg
     1501 gcgacttcag atgcccgtca cggcggcaca ccgacggcac gagaccgact aggattcagc
     1561 acggaccgtg ctaggcgggg cgctagcggt gccctgtacc cgcaatccgc tctagcgggg
     1621 ctgaatcccc tctcgagggg ctggaggccc gaggtcagcg tcctatttga ggcggtgatg
     1681 gtctggtccc gttgcgatgg agagctgtga atcaggtcag gtccggaagg aagcagcctt
     1741 aagcggtcac ctccaggcgc gtcgggagcg ccagaccgga gtcatcaaac ggcggccgcg
     1801 cctcggaccc ggcttcgaca gagggtgcac ggtccgcttt tcacctgagc cgtgcggaat
     1861 ttgccagcga acagctg
//
LOCUS       DASYFY010000493         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_560890, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000493 DASYFY010000000
VERSION     DASYFY010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560890"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VGN19_09935"
     CDS             <1..477
                     /locus_tag="VGN19_09935"
                     /inference="COORDINATES: protein motif:HMM:NF019325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CARDB domain-containing protein"
                     /protein_id="HEV7196249.1"
                     /translation="DFIDATVDSTGRVEVGYADGCTGPCAQPGGAQNFDAYATVARQQ
                     SGNTLYAAFDALPNLTPTSLSVTKAGGLYATTTTVANTGKAPAGGVITRLLVNGIVVA
                     TSSSPVDIAAGRSSVVSFPGLRLGKGTHTVEVVVDPDGRIKESNEADNQRQAQVNR"
     gene            474..959
                     /locus_tag="VGN19_09940"
     CDS             474..959
                     /locus_tag="VGN19_09940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196250.1"
                     /translation="MRPLTWSSRASRGWAGAGAVVALLLLAGCGTDETAAAMAEPAAP
                     TTGKSAALVCAKDAKPVGLPDSFPRQASVPAGYVVTDVESRTGGRIVVTAVAPKPFKQ
                     TLAEMQAAYSTRGWTPSDGEVEARDAESNFSRQQLRGRWAIREMPECPDNTAVSLLIG
                     K"
     gene            complement(1061..>1700)
                     /locus_tag="VGN19_09945"
     CDS             complement(1061..>1700)
                     /locus_tag="VGN19_09945"
                     /inference="COORDINATES: protein motif:HMM:NF015799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ANTAR domain-containing protein"
                     /protein_id="HEV7196251.1"
                     /translation="AVGTVTGCQMASVTLSERGAYQTAATTDWAASAVDQAQYDAQEG
                     PCLDAVVTPIVYAQSFPDTRWPTLGSLPAEMGARSAASYRLAAASRATTTGTAGSLNT
                     YGIEPDAFSDEAQEIGLILAAHASMAAGAVRERGALLDLAQNLNKALLSRDVIGQAKG
                     ILMERLKISPEDAFDALRRSSNRLNEKLQAVALSLAETGEFDTSELHQADGR"
BASE COUNT          267 a          581 c          587 g          265 t
ORIGIN      
        1 gacttcatcg atgccacggt cgacagcacc gggcgggtcg aggtcggcta cgccgacggg
       61 tgcaccggcc cgtgcgccca gcctggtggc gcccagaact tcgacgcgta cgccacggtc
      121 gcgcggcagc agtcgggcaa caccctttat gccgcgttcg acgcccttcc caacctgacc
      181 ccgacttctc tgtcggtgac caaggccggt gggttgtacg ccacgacgac gacggtcgcg
      241 aacaccggca aggctccggc cggcggcgtc ataacgcgac tgctcgtgaa cgggatcgtc
      301 gtggccacgt cgtcgtcgcc cgtcgacatc gccgcgggac gctcgagcgt cgtctcgttc
      361 ccgggcctgc gactcggcaa ggggacgcac acggtcgagg tggtcgtcga ccccgacggg
      421 cgcatcaagg agtccaacga ggcggacaac cagcgccagg cgcaggtcaa ccgatgaggc
      481 cgctcacctg gtcgtccaga gccagccgtg ggtgggcagg tgcgggcgcg gtagtcgcgc
      541 tgctcctgct cgccggatgc ggcaccgacg agaccgcggc cgcgatggcc gagcccgcgg
      601 cccccaccac agggaagtcg gctgcgctcg tctgtgccaa ggacgccaaa cctgtgggcc
      661 tgccggactc ctttcccagg caggcgagcg ttcccgccgg ctatgtcgtc accgacgttg
      721 agtcccgcac cggtgggcgg atcgtcgtga cggcagtggc tcccaagccc ttcaagcaga
      781 cgctggcaga gatgcaggct gcctactcga cgcgtgggtg gaccccctcc gacggtgagg
      841 tcgaagcccg ggatgccgag tcgaacttca gcaggcagca gctccgggga cgctgggcca
      901 tccgcgagat gccggagtgc cccgacaaca cggcagtcag cctgctgatc gggaaatagc
      961 ccgccagcgt ctcgcggggc gcatgatggt gagcctccgt ggagccgggg tgaccgacgg
     1021 gcaagacctg ccggatcagg tcacggggcg cctccagccc tcagcgacca tcagcctgat
     1081 gtagctcgct ggtgtcgaac tcgccagttt cggcgagact gagggccacg gcttgaagct
     1141 tctcgttgag ccggttggat gagcgacgca aggcgtcgaa ggcgtcctcg gggctgatct
     1201 tgagtcgctc catcaggatc cccttggcct gcccaatgac atctctggac agcagggcct
     1261 tgttcagatt ctgtgccaga tccagcaggg cgccgcgctc acggactgcc ccggcggcca
     1321 tcgacgcgtg tgcggccaga atgagcccga tctcctgcgc ctcgtcgctg aacgcatccg
     1381 gctcgatgcc gtaggtgttg agcgaccccg cggtgccggt ggtggtcgca cggcttgccg
     1441 cggccaggcg gtaggaggcc gctgaccggg cacccatctc cgccgggagt gagccgagcg
     1501 tcggccagcg ggtgtcggga aacgactgcg catagacaat cggggtgacg accgcatcca
     1561 ggcagggacc ctcctgggcg tcgtattgcg cctgatcgac cgccgacgcg gcccagtccg
     1621 tggtcgccgc tgtctgatac gcccctcgct cgctgagtgt gacgcttgcc atttggcacc
     1681 cggtgactgt gcccaccgcg
//
LOCUS       DASYFY010000494         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_927813, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000494 DASYFY010000000
VERSION     DASYFY010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927813"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1467)
                     /locus_tag="VGN19_09950"
     CDS             complement(<1..1467)
                     /locus_tag="VGN19_09950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196252.1"
                     /translation="MVASLSDAGRTERLGLVAAHGPDFASGTLWSSSTRQSGLAQLAD
                     LTVTLLAAGRATAPAALGGATLQAQPGDGSSVTAASSRLRALVDEDQASHEVHALVPP
                     FFDWLVGGQLAVYLLAVLLWRRKYGSAQLRGRVLRVVRNVALVAATVPVSTFLANLFP
                     WWRFQPPMVSVVASVAVFATALFAVARLGPWRRVVTGPMAVISLATLLVLSVDILLGS
                     HLQMSSLLGLQPVVGGRFYGVGNVTFALLATAALLLAVAISGHYVAQGRPRVGAAWAI
                     GVGMVALVVDGAPAWGADGGGPPALLPGLAYLVLAILGVRITWRRGLLVSVATVALFL
                     LVGFLDWLRPAHSRSHLGRFIQSMIDGGAWDIVSRKLDANVAILQSSPLAALVPVALV
                     CAIYLLARPTSWASRVLDRSSDACPTLRPGLIALLVTMTIGFAVNDSGVAIPANGAVL
                     GGPLLIALSLAVLEGETSAGAVVEPADWPAPRRRRGTAS"
BASE COUNT          263 a          529 c          564 g          158 t
ORIGIN      
        1 cgaggcagta ccgcgacgtc gccttggcgc tggccagtcg gcgggctcga cgacggctcc
       61 ggcgctcgtc tcgccctcga gcactgcgag gctgagcgcg atgagcaacg gccccccgag
      121 cacggcgccg ttggccggga tcgccacacc ggagtcgttg accgcaaacc cgatggtcat
      181 ggtcacgagc agggcgatca ggccagggcg cagcgtgggg caggcgtcgc tcgaccgatc
      241 caggacccgc gaggcccagg aggtcggtct ggccaacaga tagatcgcgc acaccagggc
      301 cacggggacg agggccgcga gcggactgct ctgcaggatg gcgacattcg cgtcgagctt
      361 gcgcgagacg atgtcccagg cgccgccgtc gatcatcgac tggatgaacc gccccaggtg
      421 cgaccgcgag tgcgccggcc gcagccagtc caagaagccg acgaggagga acagcgcgac
      481 cgtggcaacc gacacgagca gcccgcgcct ccaggtgatc ctgacgccga ggatcgccag
      541 cacgaggtac gccagaccgg gcagcagggc cggggggccg ccgccgtccg cgccccaggc
      601 gggcgccccg tccacgacca gggcgaccat tccgacccct atggcccagg cggcgccgac
      661 gcgcggccgg ccctgtgcca cgtagtgccc ggagatggcc acggccagga ggagcgcagc
      721 ggtggcgagc aaggcgaagg tgacgttgcc gacgccgtag aagcggccgc cgaccacggg
      781 ctgaagaccg aggagggagg acatctgcag gtgagacccg agcaggatgt cgacgctcag
      841 caccagcagc gtcgcgagcg agatgacggc catggggccg gtgacaaccc ggcgccaggg
      901 ccccagccgg gcgaccgcga acaacgctgt cgcgaagacg gccaccgacg cgaccacgga
      961 caccatcggc ggctggaacc gccaccaggg gaacaggttg gccaggaacg tcgagacggg
     1021 cacggtcgcg gccaccaggg cgacgttgcg aaccactcgc agaaccctgc cgcgcagctg
     1081 cgcggacccg tactttcgcc gccagagcag gacggcgagc aggtagaccg ccagctggcc
     1141 cccgaccagc cagtcgaaga acggtggtac gagcgcgtgg acctcgtggc tggcctggtc
     1201 ctcgtccacc agggcccgca gtcgcgagga ggctgcagtc acggagctgc cgtccccggg
     1261 ctgtgcctgg agcgtggcgc ctcccagggc ggcgggcgcc gtcgccctgc ccgccgcgag
     1321 cagcgtcact gtgaggtcgg cgagctgggc gagtcccgac tgcctcgtgg acgacgacca
     1381 cagggttccg gaggcgaagt cgggcccgtg ggccgccacg agacccagtc gctcggtgcg
     1441 tccggcgtcg gacaggcttg ccaccatcag gttggagcct ctgggggccg cggccatgac
     1501 ctggccgatg cggg
//
LOCUS       DASYFY010000495         9927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_875936, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000495 DASYFY010000000
VERSION     DASYFY010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9927
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_875936"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1096)
                     /gene="menD"
                     /locus_tag="VGN19_09955"
     CDS             complement(<1..1096)
                     /gene="menD"
                     /locus_tag="VGN19_09955"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070204 -
                     2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
                     carboxylic-acid synthase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HEV7196253.1"
                     /translation="MNPSTALAVVLVDELVRQGVRHAVLCPGSRSAPLAYALQNAERA
                     GRLTLHVRVDERSAGFLALGLAKLTRVPAVVVTTSGTAVANLHPAVLEAHHGIVPLIV
                     LSADRPPELRGTGANQTTVQPGMFGEAVRWSHELGTPTRQPGQQPGWRSVVSRAVAAA
                     RGVLADPGPVHLNIPLREPLVPSGDDEWPESLEGRPGGAPWTATSAATLTSAAKSGPV
                     GPISGPSDPLPAKRRPSGPDSTPGVVVLAPDVEPIERTLVVIGDLPAPGMFDEAVAWA
                     VAHGWPVVAEPFGSHPREGVVPHGPVLLSIREWLDDHEPDRVVVVGRVTLSRHVANLL
                     RRDGLRIETITATSSWSDPAGMSAVVHPWAV"
     gene            complement(1113..2648)
                     /locus_tag="VGN19_09960"
     CDS             complement(1113..2648)
                     /locus_tag="VGN19_09960"
                     /inference="COORDINATES: protein motif:HMM:NF019436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196254.1"
                     /translation="MSGPIQVEGGIGGTAVGLQSLEVAALQLASADAELGGTLARVVA
                     VATDPDLLLSAALSPTTAVRVEVTLASVVSPGGLAGRVAELSALASATVLATATYREV
                     EREVTVMADATHDAVMFAVGWCAPEIAVGALALDALGVDLASTADHAVFALPALAELG
                     GGTAGLAAGLTADPLTAPLIRGGGSSWPSHGQGRSTSTDSPNSLGRPGRPGRPDGPDS
                     PRSPGSPGSPGDGYDESLRILADSAVAWGLLDDGGRAWVTMEAAARDGAEAPTSLESL
                     AADTLNVADADAYPGHVRVVEVPGLHGSSWVVQISGTQVWSPRAGDNPLDVTTDVRSM
                     ARESTVLAQAVDEALRQAKADSGRDASADPVLLSGHSLGGIAAAGLAASPQFTARHHV
                     THVVTMGSPVSRVPVPPGIQVMSLEHSQDPVPRLEGRRNPDRQHWVTVTRDLHGDPHG
                     VDTASGAHAAAEYLETAAMVDASQDRSVQGWRAGSGHFFEPRPGSVPVIRDFRIARIP
                     ADR"
     gene            complement(2645..3013)
                     /locus_tag="VGN19_09965"
     CDS             complement(2645..3013)
                     /locus_tag="VGN19_09965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196255.1"
                     /translation="MTGDLHTLTVLAARLRAEAERTRELTSRVGHAREVSWQSVAARA
                     FRANVDHVVTGLRRVSDELDEAAAALDRHVQAVQAARDAIALAGAHANAVGEGLVRVA
                     GAVPANGAALAVRAAAELAR"
     gene            complement(3106..4506)
                     /locus_tag="VGN19_09970"
     CDS             complement(3106..4506)
                     /locus_tag="VGN19_09970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEV7196256.1"
                     /translation="MSANLVDRLAAAVHAGMPRAREDLARLVAIRSVANPTVEPPSEC
                     EAAAALVGELFTEAGVDGIQAHRTSDGSLAVVGRTRAAAGAPTVLLYSHYDVVPVGDL
                     AAWRTPPWELTELDGRWYGRGAADCKGNLVATLLALRAVHEVLGGWPVEVAVVCEGSE
                     EQSSGGMEALARARPDLVQCDALVLADTGNVEAGLPTFTTSLRGTGSVLVTVRTLQHP
                     AHSGMFGGAAPDALQALLMTLASLRGPDGETTIDGLSHDGVWSGAPVDVERFRDDAGL
                     LEGVEPLAGTGSIADLLWSRPAATVLAIDAPPVSQVTAAIQGEARAVVNLRVPAGTDA
                     KGAQELLIAHLRSHTPFGAQVEVKPVSLGQGFAARTDGPAYAAMRRAMRAAFGREPVE
                     TGQGGSIPLATALAEVVPDAEILLVGVEEPAARIHAPNESVDPQELCRTALAQALFLA
                     ELGGRLEGGAPADDPD"
     gene            complement(4503..5225)
                     /locus_tag="VGN19_09975"
     CDS             complement(4503..5225)
                     /locus_tag="VGN19_09975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEV7196257.1"
                     /translation="MKVTESWWSDRMGQDLTLVRWGHFGVPVLLFPTAGGDAEEVERH
                     HLVGHLEPLIDAGRIKVYSCDSAAGRAMARHEGSTDYRRWLFNAYHQAIAEEVMPAIH
                     ADASPQPAIVAGASIGAFNSLAMICRYPHLFSAAVGMSGTYSVDKFIGGDFTQDWYFA
                     SPLHFLPGLEGPALDALRTRYIILASGSGRWEDVGESWAVGKALGDKGIPNRVDDWGD
                     RYDHDWPTWWEMLPLYLDDLVP"
     gene            complement(5253..6401)
                     /locus_tag="VGN19_09980"
     CDS             complement(5253..6401)
                     /locus_tag="VGN19_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEV7196258.1"
                     /translation="MNGRRLAINRLRERLPVDPAVIDRFLARNGAPIVEGEKATFLFR
                     GDADEVRVRHRVVGLPDPMEMRRLPDSDLWAVTTDLPSGSRVEYQLETRNGEHYERFN
                     DPLNPRVAHSPMGSSSVCAATGYEVPDWTHFDPEARPGELVEDTVHSRALRREQPVRL
                     YLPARYNQSLRYPLLVVHDGTDYLDYASMKTVLDNLIHRLDVAPLVAAFVPPRDRLRE
                     YPNHAPHARFVARELVPRLEERLSLVDGPEGRCLMGSSFGGIASLSTAARYPGVFGSL
                     FLQSASLVFTDIGTDHGGGAAFDPVVKFVNRYRAKPGRPVERLFISCGTYEPLITPNR
                     SMVPVFREAGMTVQYVESRDGHNWENWRDRLRDGLSWLFPGPQKFVYE"
     gene            complement(6398..7321)
                     /locus_tag="VGN19_09985"
     CDS             complement(6398..7321)
                     /locus_tag="VGN19_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196259.1"
                     /translation="MRTVVLGPQRFMTTAGSALRSLGVEGPVATINAGWEEREDDVGE
                     LDQVLGGDTRHLRLHHRLFDVLDKDREFAAAALAFRDRHDALLSLYRLRLQNALDGVY
                     AVQRRISDPKAYGALDDAIETVRHVDRWYGAQLKTLYIAFDAETPLDSSGVIGWHRGE
                     LAALLDQCAAVVLTGGHVGTLLRSLRLFAIQVPDAMPVVAWSAGAMALTDRVVLFHDF
                     GPQGVQEAEVFDRGLGRLPGLVALPHARRRLRLEDRARCAVMARRFTDQHCVLLDDGT
                     SLEFDGSGALPTGARVLGLDGAIHEITGASL"
     gene            complement(7334..8557)
                     /locus_tag="VGN19_09990"
     CDS             complement(7334..8557)
                     /locus_tag="VGN19_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEV7196260.1"
                     /translation="MSIVFVEPGFPANQRRFALALAAVGAEVIGIGESEEYTLDEELR
                     NAMVGYYRVGSVTDLKAMIDAVRYIQSKVWIDRLEATVEAHTMVAAQVREATGIPGTS
                     VRTTWLCRDKPSMKQALREAGVATAASAAIDHAHEAWSFAEAVGYPLILKPRDGAGAK
                     DTTRVDDDAQLAHALTEFGSSGASSIAIEEFVEGHEGFYDTIAKDGAVVHDWTTHYYP
                     NVLEAMRSRWISPQFVTTNRMADSPFYAEVAEMGQRVIHALGIETSATHMEWFHGPKG
                     LRFSEIGCRPPGVGCWDLYSASNDVDIYREWAHVIVHGTPQQPMRRPYSAGIVALRPE
                     ADGQIKGYSGIDDIQARYGEWIIDGHFPPEGHFTQPVEAGYMANAYVRMRHPDYDTLR
                     GMLDDVGRTVHVYAG"
     gene            complement(8554..9561)
                     /locus_tag="VGN19_09995"
     CDS             complement(8554..9561)
                     /locus_tag="VGN19_09995"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEV7196261.1"
                     /translation="MPEFPALAAVLEGLHVVSIPMAVRFRGVDQREAALVRGPVGWGE
                     FSPFLEYDAQESSRWLSAALEAAWSGWPDPVRGEVPVNATVPAVPARQVPEVLRRFAG
                     ATTAKVKVAEAGQGLQDDLDRVAAVRDALGPGGRIRVDANGAWSVDQATDALARLAAY
                     DLEYAEQPCARVGELREVRLALARRGISVLVAADESIRKADDPLRVAREQAADLVVVK
                     VAPLGGVRRALEIVSDCGLPAVVSSALDTSVGMAAGVALAAALPQLPYACGLGTVALL
                     AGDVSRTSVIPVDGVLPVGPAQVDEELLERWAASAERQRWWRDRVTACHDALSGNTVD
                     P"
     gene            9580..>9927
                     /locus_tag="VGN19_10000"
     CDS             9580..>9927
                     /locus_tag="VGN19_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEV7196262.1"
                     /translation="MPTLSDFSATSLEGQEQDLSAYAGQVALVVNTASECGFTPQLEG
                     LETLYRRYADQGLVVLGFPCNQFGGQEPGTESEIGAFCQRNYGVTFPMFGKVDVNGDD
                     AHPLFEWLKSERGG"
BASE COUNT         1549 a         3588 c         3399 g         1391 t
ORIGIN      
        1 ggacagccca gggatgcacg accgcagaca taccagccgg atcgctccaa ctggaggtgg
       61 cggtgatggt ctcgatccgc aggccgtcac gacgcagcag gttggcaacg tgccgggaca
      121 acgtgactcg gccgacgacc acgacgcgat cgggctcatg gtcgtccagc cactcacgga
      181 tgctcaacag cacagggcca tgcggcacga cgccttcgcg gggatggctg ccgaagggct
      241 cggcgacgac tggccagcca tgcgccacgg cccacgcgac ggcctcgtcg aacattcccg
      301 gtgcgggcag gtcaccaatg acgaccagcg ttcgttcgat gggctccacg tcaggcgcga
      361 gaacgacgac ccccggcgtc gaatcggggc cacttggccg ccttttcgcc gggagggggt
      421 cggagggccc ggaaatgggg ccaactggcc cactttttgc ggcagacgtg agggtggcgg
      481 cagacgtggc ggtccagggc gctccgccgg gccgaccctc cagcgactcg ggccactcgt
      541 cgtcgccgga tggcaccaag ggctcgcgca gcgggatatt gaggtggact ggtccggggt
      601 ctgcgaggac gcctcgcgca gcagccaccg cacgcgagac gacgctgcgc cagccgggct
      661 gctgaccggg ttggcgggta ggggtgccga gctcgtggga ccagcgcacg gcctcgccga
      721 acatccccgg ctggaccgtc gtctggttgg ctccggtccc gcgcagctcc ggtggccgat
      781 ctgccgaaag cacgatgagc ggcacgatcc cgtgatgggc ctcgagcacc gccggatgca
      841 ggttggccac tgccgtgccc gacgtggtga ccaccacggc cggcacccgg gtcagcttgg
      901 ccaggcccag tgccaggaat ccggcggacc gctcgtcgac gcgaacgtgc agggtcaggc
      961 ggccggcccg ctccgcgttc tgaagggcgt aggccagcgg ggcggaccgg gatcccggac
     1021 acaacacggc atgccggacg ccttgacgaa ccagctcgtc gacaagcact acggcaagag
     1081 cggtcgacgg gttcacgcgt cggattgtgc cactagcggt cggcggggat ccgcgcgatg
     1141 cggaagtccc ggatcaccgg gaccgaacca ggcctgggct cgaagaagtg cccgctgccc
     1201 gcccgccagc cctgcaccga gcggtcctga gaggcgtcga ccatcgcggc cgtctcgagg
     1261 tactcggccg ctgcgtgcgc cccactggca gtgtccaccc cgtgcggatc gccatgaagg
     1321 tcacgggtca ccgtcaccca gtgctgtcga tcggggttgc gccgaccctc cagccgcgga
     1381 acgggatcct ggctgtgctc cagcgacatg acctggatgc cggggggcac cggtacccgc
     1441 gataccggcg accccatggt cacgacgtgg gtcacatggt gacgtgccgt gaactgaggt
     1501 gacgccgcca gcccggccgc ggcgatcccg ccgagactgt ggccgctgag caagactggg
     1561 tcggcgctcg cgtcccgacc tgagtctgct ttggcctgtc gtagtgcctc gtcgaccgct
     1621 tgggccaaca ccgtcgactc ccgggccatc gaccgcacgt ccgtcgtgac gtcgagcggg
     1681 ttgtcgcccg cccgcgggct ccatacctgg gtgccgctga tctgcaccac ccatgaagac
     1741 ccgtgcagcc ccgggacctc cacgactcga acgtgaccgg ggtacgcgtc ggcgtcggcc
     1801 acgttgagag tgtcggccgc caacgactcc agggaggtcg gggcttcggc cccgtcgcgg
     1861 gcagcggcct ccatcgtcac ccacgcccgc ccgccgtcgt ccagcaggcc ccacgcgacc
     1921 gcggagtcgg cgaggattcg caacgactcg tcatacccgt cgccagggct gccggggctg
     1981 ccggggctgc gcgggctgtc ggggccgtcc ggcctgccgg gcctgccggg cctgccgagg
     2041 ctgttagggc tgtcagtgct ggtcgaccgg ccttggccgt gggacggcca ggaggaaccg
     2101 cctccgcgga tcagcggggc cgtcagcggg tcggccgtca gcccggccgc cagacccgcc
     2161 gttccgccac ccagctctgc tagcgcgggc agggcgaaga cggcgtgatc cgcagtcgag
     2221 gcgaggtcga ccccgagggc atccagggcg agggccccca ccgctatttc tggggcgcac
     2281 catcccactg cgaacatcac cgcgtcgtga gtcgcatcgg ccatgacggt gacctcgcgt
     2341 tcgacctcgc gatacgtcgc tgtggccagc acggtggctg acgccagggc ggacaactcg
     2401 gccacccgtc cggcgaggcc ccccgggctg accacagagg ccagggtgac ctccactcgc
     2461 acggccgtcg ttggactcag cgcggcactg aggagcaggt ccggatcagt cgcaaccgcg
     2521 accacccgag ccagggtgcc gccgagctcg gcatccgccg acgcgagctg aagggccgcg
     2581 acctctagag actgcagccc gacggccgtc ccaccgattc cgccctcgac ctggatcgga
     2641 ccgctcacct ggcgagctcc gcggcggcac gaaccgccag tgccgcccca ttggccggga
     2701 cggcccccgc cacgcggacc agcccctcgc ccaccgcgtt cgcgtgggcg cccgccagcg
     2761 cgatcgcgtc ccgagccgcc tgaaccgcct gaacatgccg gtccagcgcc gcagccgcct
     2821 cgtcgagctc gtcggagacc cgacgcagcc cggtcacgac gtggtcgacg ttggcgcgga
     2881 acgccctggc ggccaccgac tgccagctca cctcgcgcgc atgaccgacc cgagaggtga
     2941 gctccctggt ccgctctgcc tcggcacgga gtcgggccgc gagcactgtg agcgtatgga
     3001 gatccccggt catcgctcaa gggtcctcga gcgcgccggg accacccaag ctccagtcga
     3061 ccggctgtgg aacccgcggt tccccgccac gccgttgtgg acgggtcagt ccggatcgtc
     3121 cgcgggtgcc ccaccctcca gccgaccgcc gagctcggcg aggaagagcg cctgcgccaa
     3181 cgccgttcgg cacagctcct gcgggtcgac gctctcgttc ggcgcgtgaa ttcgggcagc
     3241 cggttcctcg acgccgacga ggaggatctc tgcgtccggg acaacctcgg ccagcgccgt
     3301 tgccagcgga atcgagccac cctggccggt ctccaccggc tcccggccga aggcggcccg
     3361 catggcccgt cgcatggcgg catacgcggg cccgtcggtc cgggccgcga agccctgacc
     3421 cagggagacg ggctttacct ccacctgagc cccgaacggt gtgtggcttc gcagatgggc
     3481 gatgagaagc tcttgggcgc ccttggcgtc agtgcctgcg gggacgcgca ggttcacgac
     3541 ggcgcgcgcc tcgccctgga tggccgcggt gacctgcgac accggcggag cgtcgatggc
     3601 caggacggtg gccgccgggc gggaccagag caggtcggcg atcgaccccg tgccggccag
     3661 cggctcgacg ccctcgagca gcccggcatc gtcgcgaaag cgctcgacgt caacgggggc
     3721 cccgctccag acgccgtcgt ggctcaggcc gtcgatggtc gtctccccgt cgggtcctcg
     3781 caggctggcc agagtcatga gcagggcctg gagcgcatca ggcgccgccc caccgaacat
     3841 gcccgagtga gcgggatgct ggagggtccg caccgtcacc agaacgcttc ccgtaccgcg
     3901 cagggacgtc gtgaacgtcg gcagaccagc ctcgacgtta ccggtgtcag cgaggacgag
     3961 ggcgtcgcac tgcaccaggt ccggtcgggc tcgagcaaga gcctccatgc caccgctgga
     4021 ctgctcctcg gagccctcgc acacaaccgc gacctcgacg ggccagccgc ccaggacctc
     4081 gtggaccgcc cgcaacgcca gcagggtcgc aaccaggttg cccttgcagt cggccgcccc
     4141 tcggccgtac caccggccgt cgagctcggt gagctcccac gggggtgtcc gccatgcggc
     4201 caggtccccg accgggacca cgtcgtagtg cgagtacagc aacaccgtgg gcgcacccgc
     4261 ggccgcccga gtgcgaccga ccaccgcgag cgacccgtca ctcgtgcggt gcgcctgtat
     4321 gccgtccacg cccgcttccg tgaacagctc acccaccagt gctgccgcgg cctcgcactc
     4381 actgggcggc tcgaccgtgg ggttggccac cgaacggatg gccaccagac gggcgaggtc
     4441 ctcgcgggcc cgcggcatac ccgcgtggac tgccgcggcg agccggtcga cgaggttggc
     4501 gctcacggca ccaagtcgtc gagatagagc ggaagcatct cccaccaggt cggccagtcg
     4561 tggtcgtacc gatcgcccca gtcatcgacg cggttcggga ttcccttgtc tcccaacgcc
     4621 ttacccacgg cccacgactc gcccacgtcc tcccatcggc cactgcccga ggcgaggatg
     4681 atgtagcgcg ttcgcagggc gtccagcgcg ggcccctcca agccaggcag gaagtgcaac
     4741 ggggatgcga agtaccagtc ctgggtgaag tcgccaccga tgaacttgtc gacgctgtag
     4801 gtaccgctca tgcccaccgc cgcactgaac aggtgcgggt agcgacagat catcgccagc
     4861 gagttgaacg cgccgatcga cgcgcctgca acgatggccg gctgggggga tgcgtcggcg
     4921 tggatggccg gcatgacttc ctcggcgatc gcctggtggt aggcgttgaa gagccaccgc
     4981 cggtagtccg tcgacccctc atgacgcgcc atcgcccgtc cagccgcgct gtcacacgag
     5041 tagaccttga tccggcctgc gtcgatcagc ggttccaggt gccccaccag gtggtggcgt
     5101 tcgacctcct cggcgtcacc accggccgtg ggaaacagca ggacgggcac gccgaagtgg
     5161 ccccagcgga ccagggtgag gtcctgcccc atccggtcgg accaccagct ctcggtgacc
     5221 ttcacgactg cctcctcatg agtcgggttt ccttactcgt agacgaactt ctgcggcccg
     5281 gggaacagcc aggacaggcc gtcccgaagc cggtcccgcc agttctccca gttgtgcccg
     5341 tcccgggact cgacgtactg gaccgtcatg cccgcctcgc ggaacaccgg gaccatggag
     5401 cggttcgggg tgatgagcgg ctcgtaggtc ccgcagctga tgaagaggcg ctcgaccggg
     5461 cggcctggtt tggcacggta gcggttgacg aacttgacga cggggtcgaa ggcggccccg
     5521 ccaccgtggt ccgtgccgat gtcggtgaac accagggatg cggactgcag gaacagcgac
     5581 ccgaagaccc cgggataccg cgcggccgtc gacagcgacg cgatcccgcc gaagctggac
     5641 cccatcaggc accgaccctc gggaccatcg acgagggaca gtcgctcttc cagcctcggc
     5701 accagctcac gcgcgacgaa ccgagcgtgc ggggcgtggt tcgggtactc gcgcagccgg
     5761 tcacgcggcg gtacgaacgc cgcgacgagg ggggcgacgt cgagccggtg gatcaggttg
     5821 tccaggaccg tcttcatcga cgcgtagtcc agatagtcgg tgccatcgtg gaccaccagc
     5881 agcgggtacc gcagcgactg gttgtaccga gcaggcagat acaggcgcac gggctgctcg
     5941 cggcgaaggg ctctggagtg cacggtgtcc tcgaccagct cgcccggccg ggcctccggg
     6001 tcgaagtgcg tccagtcggg cacttcgtag ccggtggccg cgcacaccga gctcgagccc
     6061 atcggcgagt gggcgactct ggggttgagc gggtcgttga accgttcata gtgctcgccg
     6121 ttccgggtct cgagctggta ctcgacgcgt gagcccgacg gcaggtccgt cgtcacggcc
     6181 cacaggtcgc tgtccggaag ccgtcgcatc tccatggggt cgggcagccc gacgactcgg
     6241 tgtcggaccc gcacctcgtc ggcgtccccc cggaacagga aggtggcctt ctcgccctcg
     6301 acgatcggcg cgccattccg ggcgaggaac cggtcgatga ccgcggggtc gaccggcagc
     6361 cgctcccgga ggcggttgat ggcgaggcgt cggccgttca caaggaggcc ccggtgatct
     6421 cgtggatggc gccgtcgagc ccgagaaccc ttgcgcccgt aggcaaggcg ccgctgccgt
     6481 cgaactccaa cgatgtcccg tcgtcgagca gcacgcagtg ctggtcggtg aagcggcgtg
     6541 ccatcacggc gcagcgagca cgatcctcca gccgcagccg gcgacgggcg tggggcagcg
     6601 cgacgaggcc cgggaggcgc cccagtccgc ggtcgaacac ctcggcctcc tggaccccct
     6661 gcggcccgaa gtcatggaag agcaccaccc ggtcggtcag cgccatggct ccggcggacc
     6721 aggccacgac aggcatggcg tcaggcacct ggatcgcgaa cagccgcaac gagcgcaaca
     6781 gggttccgac atggccgccg gtgagaacga ccgcggcgca ctggtcgagc agcgcggcca
     6841 gctcgccgcg gtgccagccg atcaccccac tggagtccaa cggcgtctcc gcgtcgaacg
     6901 ctatgtagag cgtcttgagc tgcgcgccat accacctgtc cacgtgccgc accgtctcga
     6961 tggcgtcgtc cagcgccccg tatgccttgg ggtcactgat gcgtcgctgc acggcataca
     7021 ccccatccag ggcattctgg aggcgcaacc ggtagaggga cagcagggca tcgtggcggt
     7081 cacggaaggc cagcgccgcc gccgcgaact cgcggtcctt gtcgagcacg tcgaacagcc
     7141 ggtggtgcaa gcgcaggtgg cgggtgtcgc cgcccaggac ctggtcgagc tcgccgacat
     7201 cgtcctcgcg ctcttcccaa ccggcattga tcgtcgccac cggaccctcg acccccaggg
     7261 agcgcaaggc gctgcccgcc gtggtcatga accgttgcgg ccccagaacg acagtgcgca
     7321 tcaaggagag cagtcagcct gcgtacacat ggacggtccg acccacgtcg tccagcatcc
     7381 cgcgcaacgt gtcgtagtcg gggtggcgca tgcgcacgta cgcgttcgcc atgtagccgg
     7441 cctcgacggg ctgggtgaag tggccctccg gcgggaagtg cccgtcgatg atccactcgc
     7501 cgtagcgggc ctggatgtcg tcgatgccgc tgtagccctt gatctggccg tcggcctccg
     7561 ggcgtagcgc cacgatcccc gccgagtacg ggcggcgcat cggctgctgc ggcgtgccat
     7621 ggacgatgac gtgagcccat tcgcgataga tgtccacgtc gttgctggcc gagtacaggt
     7681 cccagcagcc cacccccggc gggcggcagc cgatctcgga gaaccggagc cccttcgggc
     7741 catggaacca ctccatgtgc gtcgcgctgg tctcgatgcc cagggcatga atgacccgct
     7801 ggcccatctc ggcgacctcc gcatagaacg gggagtccgc cattcggttc gtcgtcacga
     7861 actgcggaga gatccagcgg ctgcgcatcg cctccaggac gttcgggtag tagtgggtgg
     7921 tccagtcgtg caccaccgcg ccgtccttgg cgatggtgtc gtagaagccc tcatgcccct
     7981 cgacgaactc ctcgatcgca atcgacgagg cgcctgacga gccgaactcg gtcagcgcat
     8041 gggccagctg cgcgtcgtcg tccacccggg tcgtgtcctt ggcccccgcc ccgtcgcgcg
     8101 gcttgaggat gagcgggtag ccgacggctt cggcgaagga ccaggcttcg tgggcgtggt
     8161 cgatcgccgc ggaggcggcc gtggcgaccc ctgcctcgcg cagcgcctgc ttcatcgacg
     8221 gcttgtcccg acacagccag gtcgtgcgca ccgaggtgcc ggggataccg gtggcctcgc
     8281 gtacctgggc ggcgaccatg gtgtgggcct cgacggtggc ctcgagccgg tcgatccaca
     8341 ccttggactg gatgtaccgg acggcgtcga tcatggcctt gaggtccgtg acggagccca
     8401 cccggtagta gccgaccatg gcgttccgga gctcctcgtc gagggtgtac tcctcggact
     8461 caccgatgcc gatcacctcc gcgcccactg cggccaacgc gagggcgaag cgacgctggt
     8521 tggcggggaa cccgggctcg acgaagacga tgctcacggg tcgactgtat tgccggaaag
     8581 ggcgtcatgg catgccgtaa cccggtcccg ccaccaccgc tgccgttccg ccgacgcggc
     8641 ccaccgctcg agcagctcct cgtccacctg cgcggggccg accgggagga ccccatcgac
     8701 cggtatcacc gacgtcctgc tgacatcccc cgccaggagc gccaccgtgc ccagcccgca
     8761 ggcatacggc agctggggta gggccgcagc cagggccacc ccggcggcca tgccgaccga
     8821 cgtgtccaag gccgaggaaa ccaccgcagg caggccgcag tcactgacga tctccagagc
     8881 cctgcggacc cccccaagcg gcgcgacctt gaccaccacc aggtcggccg cctgttcgcg
     8941 ggccacccgc agcggatcgt ccgctttgcg gatcgactcg tccgccgcga ccagcaccga
     9001 gatgccccgg cgggccagcg cgaggcgcac ctcgcgcagc tcccctaccc gcgcgcacgg
     9061 ctgctcggca tactccaggt cgtatgccgc gagccgcgcg agcgcgtcgg tcgcctggtc
     9121 gacggaccag gcaccgttcg catccacccg gatgcggcca ccgggaccga gcgcatcgcg
     9181 caccgcggcc actcgatcga ggtcgtcctg cagaccctgt ccggcctcgg cgaccttgac
     9241 cttggccgtc gtggccccgg cgaaacgacg gagcacctcg gggacctgcc gagcgggtac
     9301 cgccgggacg gtggcgttga ccggcacctc gcctcgcact ggatccggcc agcccgacca
     9361 ggccgcctcg agggccgccg acagccaccg tgaggactcc tgggcgtcgt actcgagaaa
     9421 cggcgagaac tcgccccacc ccaccggacc ccgcaccaac gccgcctcgc gctggtccac
     9481 cccccggaag cgcacggcca tcgggatcga cacgacgtgc aggccctcca ggacggcagc
     9541 gagcgcgggg aactcaggca cggggcttac ggtatgccca tgccgactct gtccgatttc
     9601 tccgcgacca gcctcgaggg ccaggaacag gacctctccg cgtatgccgg ccaggtcgcc
     9661 ctggtcgtga acaccgccag cgagtgcggg ttcaccccgc agctcgaggg gctcgaaacg
     9721 ctgtaccgcc gttacgccga ccaggggctg gtcgtgctgg gcttcccgtg caaccagttc
     9781 ggcggccagg agccggggac cgagtccgag atcggtgcct tctgccagcg caactacggc
     9841 gtgacctttc cgatgttcgg caaggtcgac gtcaacgggg acgacgcgca cccgctcttc
     9901 gagtggctca agagcgagcg tggcggc
//
LOCUS       DASYFY010000496         2161 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1716515, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000496 DASYFY010000000
VERSION     DASYFY010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1716515"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VGN19_10005"
     CDS             complement(<1..402)
                     /locus_tag="VGN19_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7196263.1"
                     /translation="MTRIPLGPLSGNNLGDYLREQRQSARLSLRQLSELAGVSNPYLS
                     QIERGLKRPSAEILQQLAKGLEVSAESLYVRAGILDERHGHDTSPLDTRAVIAADPQL
                     TARQKAALVDIYDSFVGPTAKPARKSTAGKAK"
     gene            complement(531..1376)
                     /locus_tag="VGN19_10010"
     CDS             complement(531..1376)
                     /locus_tag="VGN19_10010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HEV7196264.1"
                     /translation="MPSTSGTLITVAPTGAELAKADFPQLPTTLEELVETARSCELAG
                     ASMIHLHIRDGQHRPTLDGGYLRAAVQALREQTSLVIQLSTGGSVHDPLEQRLTVLDA
                     EPDSCSLTCGTTNFGDDVFLNPYGFMSDLYVQAQEREVVPEFELFDLGHVASLARLVA
                     SHGLPFGGKVHVDFVTGVPGGMPGTPAALLAGVAMLPPEVTSWAATGIGRSHLPIAAA
                     ALAAGGHLRVGMEDNVVFARGVPVTHNSELVERVAHLAEVMQRPALSTDGARAMLGVK
                     DRRSA"
     gene            1495..>2161
                     /locus_tag="VGN19_10015"
     CDS             1495..>2161
                     /locus_tag="VGN19_10015"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HEV7196265.1"
                     /translation="MDLHDYVRVVRKRWRTITLATLLMIALAAAYTLTSPKVYEARTQ
                     LFVSTSGGSDTTQLLQGNTFTQQRVKSYSDLISTPAVLDPVISQLHLNTTADSLGLRV
                     SASVPLDTVLIDVLVDDPNPQQAALIAGAVGKQFSSSVIDLERVSDTTPSPVKVSVVR
                     PPSVPSAPVSPKPSRNLALGVVLGLLVGLGAALLRDSLDTSVKSERDVKETTDETVIG
                     TIAY"
BASE COUNT          362 a          739 c          719 g          341 t
ORIGIN      
        1 cttcgccttg cccgcggtgg acttgcgggc cggtttggcc gtgggaccca cgaacgagtc
       61 gtagatgtcg accagggcgg ccttctgacg tgcggtgagc tgtgggtcgg cggcgatgac
      121 ggcccgggtg tcgagcggcg acgtgtcgtg cccatgccgc tcgtccagga tcccggccct
      181 gacgtagagc gactccgcgg agacctccag ccccttggcc agttgctgga gaatctcggc
      241 gctgggccgc ttcaagccac gttcgatctg cgagaggtac gggtttgaga caccggccag
      301 ctcggagagc tggcgcagcg agagccgggc cgactgcctc tgctcgcgca ggtagtcgcc
      361 caggttgttg ccactgaggg gtcccagcgg gattcgggtc atgactccat catgcttgct
      421 gcagttagca gaatgcaaac cccaggcagc gtgttggcca tcacaaggcg acgttttggg
      481 gtctgttcag gccagaagca ggcgggaatc cggcgacaat caggcgaaaa tcacgcgctg
      541 cggcgatcct tcacacccag catggcgcgt gcgccgtcgg tcgacagagc agggcgctgc
      601 atgacctccg ccaggtgggc gacccgttcg acgagctcgg agttgtgggt gacgggcacc
      661 cctcgagcga atacgacgtt gtcctccatc cccacccgaa ggtggccccc ggcggccaac
      721 gcggctgccg caatgggcag atggcttcga ccgatccccg tcgcggccca ggacgtgacc
      781 tccggcggga gcatcgccac gccggccagg agggcagcgg gcgtgcccgg catacctccc
      841 ggaaccccgg tcacgaagtc gacgtgcacc ttgcccccga acggcaaccc gtgcgaggcg
      901 acgagcctgg ccagcgacgc gacgtgaccc aggtcgaaca gctcgaactc gggcacgacc
      961 tctcgttcct gtgcctgcac gtacaggtcg gacatgaagc cgtaggggtt gaggaagacg
     1021 tcgtcgccga agttggtcgt gccgcaggtc agactgcacg agtccggctc cgcgtcgagg
     1081 acggtgagcc gctgctcgag cgggtcgtgc acgctgcccc cggtcgagag ctggatcacc
     1141 agggaggtct gctcgcgcag cgcctggacg gcggcgcgca ggtagccgcc gtccaacgtc
     1201 ggccggtgct ggccatcacg gatgtgcagg tggatcatcg aggcgccggc cagctcacag
     1261 gaccgagccg tctccaccag ctcctcgagc gtggtcggaa gctgcggaaa gtctgctttg
     1321 gcgagctcag ctccggtggg tgcgacggtg atcagggtgc cggacgtcga aggcatggca
     1381 gcatcatggc agttgcccga aatgcccctt gccgtaccta tgaaacactg atgaggaaat
     1441 ccgtctggcc caccctccct cggagggccg acgacctcga ctggaagcag gaccgtggac
     1501 cttcacgact acgtccgggt ggtacgcaag cggtggcgca ccatcactct ggcgacccta
     1561 ctgatgatcg ccttggctgc cgcatacacc ttgaccagcc cgaaggtcta cgaggcgcgg
     1621 acccagctgt tcgtgtcgac ctccggcggc tcggacacga cccagctgct ccagggcaac
     1681 acgttcaccc agcagcgcgt gaagtcatac tcggacctga tctccactcc cgcggtcctg
     1741 gaccccgtga tcagccagct gcacctcaac accaccgccg actcgctggg actgcgcgtc
     1801 tcggccagcg tgcccctgga cacggtcctg atcgacgtcc tggtcgacga ccccaaccca
     1861 cagcaggcgg cgctgatcgc cggggccgtc ggcaagcagt tctccagcag cgtcatcgat
     1921 ctggaacggg tgtccgacac cacccccagc cccgtcaagg tgtccgtggt gcggccgccg
     1981 tcggtcccca gcgccccggt gagccccaag ccctcgcgca acctggcgct cggggtcgtc
     2041 ctcggcctgc tcgtcgggct cggggccgcg ttgttgcgcg actccctgga cacctccgtc
     2101 aagagcgagc gcgacgtcaa ggagacgacc gacgagacgg tcatcggcac catcgcctac
     2161 g
//
LOCUS       DASYFY010000497         1512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1296921, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000497 DASYFY010000000
VERSION     DASYFY010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296921"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..151
                     /locus_tag="VGN19_10020"
     CDS             <1..151
                     /locus_tag="VGN19_10020"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466189.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEV7196266.1"
                     /translation="ALGHPFGMTGARILCTLLNDLRTLDKTLGLETMCVGGGMGMAMI
                     LERLN"
     gene            complement(174..>1512)
                     /locus_tag="VGN19_10025"
     CDS             complement(174..>1512)
                     /locus_tag="VGN19_10025"
                     /inference="COORDINATES: protein motif:HMM:NF024919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEV7196267.1"
                     /translation="GVYYPPIVKAASDNGASAEGGEGWQPAQLYKAVAAGHPVVVRVP
                     HLLAPASVGYWTAWDGRQVWYSHRDHAQTLVGFDYGSGTVTLADPADGQLHTYSMAAF
                     ENAFALFHAQAIVVSPGGAAVTQAVSPTTGSINIAVRGPDDSLRLYWSADGGWYGPVG
                     LGGPGAAFSGPAIVAEGNGNFDVAVEGPSNTLDLYWYISDRWYGPGQVGPPGSTYSTP
                     SMTIDPSGRITIAVQGPSHSLYVFWDDATKWYGPAGLAAANSTFSAPALALVGSAPPT
                     LEAVVQSGDAALQQYSEHSDGSWSGPNAWSQVDQQYSAAGSTPAITLYQGPGNSLDAH
                     SASGTTRVGAPGTTFSAPAVASFGTVTYAASQGFGHSLDFYVDNGGWGGATIPGSGAI
                     SYSAPSVVVEAGGNVDLAVEGPSNTLYLFWRIGARWYGPGQIGTVGSVFAALP"
BASE COUNT          228 a          549 c          515 g          220 t
ORIGIN      
        1 cgccctcggt caccccttcg gcatgaccgg cgcgcgcatc ctctgcaccc tcctcaacga
       61 cctgcgcacc ctcgacaaga ccctcggcct cgagaccatg tgcgtcggcg gcggcatggg
      121 catggccatg atcctcgagc gactcaactg aggcgcggac cggaacacgc gcgctagggc
      181 agagcggcga acaccgaccc cacggtgccg atctgtcccg ggccgtacca cctggcgccg
      241 atgcgccaga acaggtacag cgtgttggat ggcccctcca ccgcgaggtc gacgttgccg
      301 cccgcttcga cgaccaccga tggcgcggag tatgagattg cgccggagcc cgggatggtc
      361 gcgccacccc acccgccgtt gtctacgtag aagtcgaggc tgtggccgaa tccctgtgaa
      421 gcagcgtacg tgaccgtgcc aaaggaggcg acagcgggcg cggagaacgt cgtccccggc
      481 gcaccgactc gcgtcgtgcc cgatgcgctg tgggcatcga gcgagtttcc cgggccctgg
      541 tacagcgtga tcgcaggcgt gctccccgct gcggagtatt gctggtccac ctgcgaccac
      601 gcgttcggcc cggaccacga gccgtcgctg tgctcgctgt actgctgcag cgcagcgtcc
      661 ccgctctgca ccaccgcctc gagcgtcggc ggcgccgagc cgaccagcgc cagcgccgga
      721 gcgctgaagg tggagttcgc ggctgcgagc ccagccggcc cgtaccattt ggtggcgtcg
      781 tcccagaaca cgtacaggct gtgcgacggt ccctgcacgg cgatggtgat gcgcccgctg
      841 gggtcgatcg tcatcgacgg cgtcgagtac gtcgatcccg gtgggcccac ctgccccggt
      901 ccgtaccacc ggtcagatat gtaccagtac aggtcgagcg tgttgctcgg accctcgacg
      961 gcgacgtcaa agttgccgtt gccctcggcg acgatggccg gccccgagaa cgccgcgccg
     1021 ggcccgccca gcccgaccgg gccgtaccac ccgccgtccg cgctccagta gaggcgcagc
     1081 gaatcgtccg ggcccctgac ggcgatgttg atgctgcccg tggtcgggga gaccgcctgg
     1141 gtcaccgccg caccgccggg gctcaccacg atggcctggg cgtggaagag cgcgaacgcg
     1201 ttctcgaacg cggccatgga gtaggtgtgc agctgcccgt cggctgggtc cgcgagcgtc
     1261 acggtgcccg agccgtagtc gaagcccacg agcgtctggg cgtggtcacg gtgcgagtac
     1321 cagacctggc ggccgtccca cgccgtccag taccccaccg acgcgggcgc gagcaggtga
     1381 ggcacgcgga ccacgacggg atgcccggcg gccacggcct tgtagagctg cgccggttgc
     1441 cacccctccc caccctcggc ggaggccccg ttgtcactgg ccgccttgac tatgggcggg
     1501 tagtagacac cg
//
LOCUS       DASYFY010000498         8536 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_140085, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000498 DASYFY010000000
VERSION     DASYFY010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8536
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140085"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /gene="fdxA"
                     /locus_tag="VGN19_10030"
     CDS             complement(<1..278)
                     /gene="fdxA"
                     /locus_tag="VGN19_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013882759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEV7196268.1"
                     /translation="MTYVIAQPCVDLKDKACIEECPVDCIYEGERSLYIHPDECVDCG
                     ACEPVCPVEAIYYEDDVPEQWAQYYKANVEFFDDLGSPGGAAKLGLIN"
     gene            300..1355
                     /locus_tag="VGN19_10035"
     CDS             300..1355
                     /locus_tag="VGN19_10035"
                     /inference="COORDINATES: protein motif:HMM:NF020034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196269.1"
                     /translation="MVTDVRALPVGSRVVVRWRLSAPDAATGATLTDSVGTLVSADDV
                     ELTVETARGLVTIPVEQVTAAKQVPPRPTRRAPAQLALSTHELQRVMAPSWGAAEQHS
                     LGEWELRASSGFTQRGNSVLPVGDPGMTVPEAVDAVESWYAARGLPAKFAVAGPVGFD
                     AAQDPLGAVLLGRGYQLGSLTVVLTAGTATVAAADPGGPEVLTSTELDQVWLEAYQGT
                     RTTVPEVTEAVLTGSPRQLFGQIRPGGGLSQQLGLRSDTAAGIRPVALGRLGLASGWA
                     GLGAVWTDPAYRGRGLAAHLTARLAQQAHREGVLLMHLQAEHDNEPALRLYRHLGFDS
                     HSAYAYLTQPPPRQPEP"
     gene            complement(1371..3050)
                     /locus_tag="VGN19_10040"
     CDS             complement(1371..3050)
                     /locus_tag="VGN19_10040"
                     /inference="COORDINATES: protein motif:HMM:NF016202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanW family protein"
                     /protein_id="HEV7196270.1"
                     /translation="MRESGSAALRLGIALVVLVAAYVGAAWFLGRHVPANTTVAGIPV
                     GGMSTDQAEGTLRRAVGTEATAPVVVMAGNRTLSLDPARAGLTLDLSATVSSLCQFSL
                     KPADLWNHLTGGTEEPLVKSVDRPRLDAALSSAAAPLDTPAVQGGVSFADGVVRSVQP
                     LAGSTLSVPQTADQIALRWPAMGPIQASLVATEPAVSAQEVTRAVTQFAAPAMSGPVT
                     VVVGTKKFAVRPAAYATALSMKADGSGQLVPVVDQAKLVAVVRAAGTTAGVESRPRDA
                     RITFKGTTAVVVPGTPGVTLDDGSVAASFLPALTSTARTAKVATTLLQPAVTTAQANA
                     IKPKAVISTFTTQFPLNPPRTANITLAAKTLNGTYVAPGAQFSLNAALGQRTAAKGYQ
                     RAPVIEGGRLTTDYGGGVSQLSTTIFNAAFFAGVRIDQYLPHSFYISRYPEGREATVS
                     WPNVDQKWTNDTGYGILIAARVTGSSVTVSLYGTKVWDIQSVKGPRRNVVQPRTIVDA
                     SSTCVPQSPSPGFDVTVTRAFARGGKTVRTSTFTTHYLPEDNVTCTHPTKG"
     gene            complement(3074..3580)
                     /locus_tag="VGN19_10045"
     CDS             complement(3074..3580)
                     /locus_tag="VGN19_10045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HEV7196271.1"
                     /translation="MTSAAIPPEAADEFRLAMGRFATGVTVLTTRLDGHDHAMTANAL
                     TSVSMDPMLVLVCVEVEARFHDAVIESGVWGVSVLSASQRPTAEWLSTRGRPLHGQLD
                     RVAHRRGAATGVALLDGALATVECRTTDTRLAGDHTIVVGEVLSLSTGDHPGDALVYY
                     RSRYATLQ"
     gene            complement(3577..4500)
                     /gene="mshB"
                     /locus_tag="VGN19_10050"
     CDS             complement(3577..4500)
                     /gene="mshB"
                     /locus_tag="VGN19_10050"
                     /EC_number="3.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010125 - mycothiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-
                     D-glucopyranoside deacetylase"
                     /protein_id="HEV7196272.1"
                     /translation="MLPPLLFVHAHPDDETLTTGVAMAHYVRVGHPVHLLTCTLGDEG
                     EVIPGELADLASTHADTLGPHRREELREAMAVLGVQHRVLGEDPVSRIASRYRDSGMA
                     GTPSAANPSAFVNADLDEAATLVADVVRELGPSAVITYDRNGGYGHPDHIQTHRVTCA
                     ALASLDDDLRPPLFAVLTPRSWAREDRQWLARHRVAAGDEGAGGDGGDSRWLLPDPDG
                     DYPASVVDDVLVTHELVFPELVPVQAEALRRHRTQVTVAADGLSYALSNDVAARLSGR
                     EGYAAIDPTTGDLAENRGDPRHTGLVPEPAR"
     gene            complement(4539..6134)
                     /locus_tag="VGN19_10055"
     CDS             complement(4539..6134)
                     /locus_tag="VGN19_10055"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7196273.1"
                     /translation="MLALGPVDTWDPQRISAPQDIAFAGRTFLRTLTAFPPGGSGAGQ
                     HSVVGDLATDAGTPDASMKTWRFTLRKGITWQDGSSISCADVQYGISRSFAAPFSTEG
                     LNYPLAYLDIPRKADGTSTFAGPTDAAGLAAFDKAVACSGDTVTFHLTTSMTDFNQAL
                     ALPVFAPFRKSQDRGKAGTYAVFASGPYQLKGLWDASSGGTFVRNPKWDKASDPIRKA
                     QPVAISYVEGTESQTAVQQVLDGRGERAASVSLDSAPPAVQQHLLSDPALSARVLNPT
                     GQFVDYLAPNLVSGVMKNAEVRTAFALATNKDGYVTALGGPSTAAPTNTLIGPALPGH
                     RSDDPLGAGSSGDPAAARAMLRKSGLTLPVTVRVAYRSTPTSDKAMAALSSGWTDAGF
                     NVQLQPVTKSYFQTVSLPGRTATTDVFWANWAPAWPSASTVIPSLFDSRVNLTASGKG
                     LDLGGFQDDKVNAEITRILALRDASAQATAWADLDARLAKRVAFVGLAQRRSLYVAGS
                     AVSGLSANEAMGGFVDLATIEVR"
     gene            complement(6282..8165)
                     /gene="typA"
                     /locus_tag="VGN19_10060"
     CDS             complement(6282..8165)
                     /gene="typA"
                     /locus_tag="VGN19_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEV7196274.1"
                     /translation="MPMQTRGDIRNVAIVAHVDHGKTTLVDKMLWQAGAFGEHQHVDE
                     RAMDSGDLEREKGITILAKNTAIHYAGKAAADAGLPDGATINIIDTPGHADFGGEVER
                     GLSMVDGVVLLVDASEGPLPQTRFVLRKALAAKMPVVLCINKVDRPDSRIAEVVDEVY
                     ELFMDLDADEHQIEFPIVYASAKNGAASMNRPENGGLPDADNLEALFETILSTIPAPV
                     YDDEAPLQAHVTNLDASNFLGRLALLRVHNGTIRKGQHVAWCKVDGTVERVKITELLM
                     TEALERKPAESAGPGDIIAIAGIPDIMIGETLADAENPIPLPVITVDEPAISMTIGTN
                     TSPMVGRVRGSKVTARMVKDRLDKELVGNVSLRVLTTERPDAWEVQGRGELALAILVE
                     QMRREGYELTVGKPQVVTREVDGKTHEPVERLTIDTPEEFLGPITQILAARKGRMEQM
                     TNHGTGWIRMEFLVPSRGLIGFRTLFLTETRGTGIAHHVFEDYEPWFGAITTRTSGSL
                     VSDRTGVVTAYAMVNLQERGTLFVEPTTEVYEGMIIGENSRADDMDVNITKEKKLTNV
                     RASSSDNFEKIVPPRKLSLEQSLEFCREDECVEVTPEAVRIRKVELDQSLRARAASRA
                     RNA"
     gene            complement(8218..>8536)
                     /locus_tag="VGN19_10065"
     CDS             complement(8218..>8536)
                     /locus_tag="VGN19_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEV7196275.1"
                     /translation="GGWEFPGGKVDPGETLLDAVHREVREELGVEVVLGQPVPGPLPR
                     GRWPLGDHFAMTVWMAQVTRGEPAPLEDHDQLRWLSKHDLYAVPWLPADLPIVDAIGG
                     FLA"
BASE COUNT         1280 a         2863 c         3051 g         1342 t
ORIGIN      
        1 ttgttgatga gaccaagctt ggccgcgccg ccggggctgc cgaggtcgtc gaagaactcc
       61 acgttggcct tgtagtactg cgcccactgc tcggggacgt cgtcctcgta gtagatcgcc
      121 tcgacggggc agaccggctc gcaggcaccg cagtccacgc actcgtcggg gtggatgtag
      181 agcgaccgct caccctcata gatgcagtcg accggacatt cctcgatgca ggccttgtcc
      241 ttgaggtcca cacaaggctg cgcgatcacg tacgtcatgc cggacatact atgcggcgca
      301 tggtgaccga cgtgcgcgcc ctccctgtgg ggtctcgggt cgtggtcagg tggcgtctga
      361 gcgctcctga cgcggcgaca ggggccacgc tgaccgactc ggtgggaacg ctcgtctcgg
      421 ccgacgacgt cgagctgact gtggaaacgg cccgggggtt ggtgaccatc ccggtcgagc
      481 aggtcactgc ggccaaacag gtgccgccca ggccgacccg gcgcgcgccc gcccagctgg
      541 cgctctcgac ccacgaactg caacgcgtca tggcgcccag ctggggcgcc gcagaacagc
      601 actccctggg tgagtgggag ctgcgcgcct catcgggatt cacccagcgg ggcaactccg
      661 tgctgccggt cggcgacccg gggatgaccg tgcccgaggc cgtggacgcg gtggagagct
      721 ggtatgccgc gcgtggcctc ccggccaagt tcgctgtagc tggaccggtg ggcttcgacg
      781 ccgcacagga cccgctcggg gctgtgctgc tcggtcgcgg ctaccagctc ggcagcctca
      841 ccgtggtcct caccgcaggg accgcgacgg tggccgcggc agacccgggc ggtcccgaag
      901 tgctgaccag caccgagctc gaccaggtgt ggctggaggc ctaccagggc actcgcacca
      961 cggtcccgga ggtcaccgag gccgtcctga cgggcagccc gcgccagctg ttcggccaga
     1021 tccgacccgg cggcgggctc tcccagcagc tggggctgcg tagcgacacc gccgccggaa
     1081 tccgcccggt ggcgctgggg cgactggggc tcgcgtccgg ctgggctgga ctgggcgcgg
     1141 tctggaccga cccggcatac cgcggtcgtg ggctggccgc tcacctgacc gcccggctgg
     1201 cgcagcaggc ccaccgcgag ggggtgctgt tgatgcatct gcaggcggaa cacgacaacg
     1261 aacccgccct ccggctgtat cggcacctgg gtttcgacag ccactcggcc tacgcctacc
     1321 tcacgcagcc cccgcccagg caacctgagc cctgatcgaa ctcggggtgc tcagcccttg
     1381 gtggggtggg tgcaggtgac gttgtcctcg ggaaggtagt gcgtggtgaa ggtcgaggtc
     1441 cgcacggtct tgccacccct ggcgaacgcc ctggtcacgg tgacgtcgaa cccgggcgac
     1501 ggtgactgcg ggacgcaggt cgacgaggcg tcgacgatcg tgcgcggctg caccacgttg
     1561 cgccgcgggc ctttgaccga ctggatgtcc cagaccttgg tgccgtacag cgagaccgtc
     1621 accgagctgc cggtgacgcg ggcggcgatg aggatcccgt aacccgtgtc gttggtccac
     1681 ttctggtcca cgttgggcca ggacaccgtg gcttcacgcc cttcgggata ccgcgagatg
     1741 tagaagctgt ggggcaggta ctggtcgatc cgtaccccgg caaagaaggc ggcgttgaag
     1801 atcgtcgtcg acagctggga gaccccgccg ccgtagtcgg tggtcaaccg gccgccctcg
     1861 atcaccgggg cgcgctggta ccccttggct gccgtgcgct gacccagcgc tgcgttgagg
     1921 ctgaactgcg cgccgggggc gacgtaggtg ccattgaggg tcttggccgc gagcgtgatg
     1981 ttggcggttc ggggcgggtt gagggggaac tgggtcgtga aggtcgagat gacggccttg
     2041 ggcttgatcg cgttcgcctg cgccgtggtg acggcgggct gcagcagcgt cgtggcgacc
     2101 ttggcggtgc gggctgtcga ggtcaacgcg gggagaaagc tggccgcgac cgagccatcg
     2161 tcgagcgtca ccccgggcgt ccccggcacg acgaccgcgg tggtgccctt gaacgtgatc
     2221 cgagcgtccc gcggccgcga ctcgactccc gctgtggtgc cggctgctcg cactactgcc
     2281 accagcttgg cctggtcgac caccgggacg agctggccgc tgccgtcagc cttcatggac
     2341 agggccgtcg cgtaggcagc cggccgcacc gcgaacttct tggttccgac caccacggtc
     2401 acaggtccgg acatggctgg agcggcgaac tgggtcacgg ctcgcgtgac ctcctgcgcg
     2461 gacaccgctg gctcggtggc aacgaggctt gcctggatcg gtcccatcgc cggccagcgc
     2521 agggcgatct ggtcagcggt ctgaggcacc gacagggtcg acccggcgag gggctgcacc
     2581 gaccgcacga cgccgtcggc gaagctgacg ccgccctgga ccgcgggggt gtccagcgga
     2641 gcagcggccg acgacagggc cgcgtcgagg cgcgggcggt cgaccgactt cacgagtggc
     2701 tcctcggtcc cgccggtcag gtggttccac agatctgccg gcttgaggct gaactggcac
     2761 aggctgctca cggtggcgga caggtcaagg gtgagcccgg cacgcgcggg atcgagcgag
     2821 agcgtcctgt tccccgccat gaccacgacg ggcgctgtcg cctcagtccc gaccgcacga
     2881 cgcagcgtcc cctcggcctg gtcggtcgac atgcccccca cggggatccc cgcgacggtg
     2941 gtgttggcgg gcacgtggcg accgaggaac caggccgctc cgacgtaggc ggcgacgaga
     3001 accaccaggg cgattccgag ccgcagggcg gctgacccgc tctccctcac acgctctccc
     3061 tcaccctgcc cgatcactgc agcgttgcgt acctgctgcg gtagtagacc agcgcatccc
     3121 cgggatgatc gcccgtcgag agtgagagta cttcgccgac cacgatggtg tggtcacctg
     3181 cgagccgcgt gtcggtggtg cggcattcga cggtcgccag cgcaccgtcg aggagagcca
     3241 ctccggtcgc tgcgccgcgc cggtgcgcca ctcggtccag ctgtccgtgc agcggcctcc
     3301 ccctggtgga gagccattcc gcggtcgggc gctgtgatgc ggacagcacg ctgacccccc
     3361 aaaccccgga ctcgatgacg gcatcgtgga accgtgcctc gacctcgaca cagacgagca
     3421 cgagcatggg atccatcgag accgaggtca aggcgttggc cgtcatcgca tggtcatggc
     3481 cgtccaatcg agtcgtcagg acggtgaccc cagtggcgaa acgccccatg gcgagccgga
     3541 actcgtcggc tgcctcgggc gggatggcgg cgctggtcat cgggccggct cggggaccaa
     3601 gccggtatgc cgcgggtccc cacggttctc ggcgaggtcg ccagtcgtgg ggtcgatggc
     3661 cgcgtacccc tcacgtccgg acaaccgggc cgcgacgtcg ttggacaggg cataggacag
     3721 gccgtccgcg gcgacggtca cctgggtgcg atggcgccgc agcgcctcgg cttgcaccgg
     3781 caccagctct ggaaacacca gctcatgggt caccagcaca tcgtcgacca ccgacgcggg
     3841 gtagtccccg tcggggtcgg gcagcagcca acgcgagtct cccccgtcac ccccggcacc
     3901 ctcatcgcct gcggctacgc ggtgtcgcgc cagccactgg cggtcctcgc gcgcccagga
     3961 ccgcggggtc agcacggcga acagcggcgg tcggaggtcg tcgtcgagcg acgcgagggc
     4021 cgcacaggtc acccgatggg tctggatgtg gtcaggatgt ccgtagccac cgttgcggtc
     4081 gtaggtgata accgcgcttg gcccgagctc tcggaccacg tcggccacga gcgtggccgc
     4141 ctcgtcgagg tcggcgttga cgaaggcgct cgggttcgct gcgctcggcg tcccggccat
     4201 ccccgagtct cggtaccgag aggcgatcct cgacaccggg tcctccccga gcacccggtg
     4261 ctggacgccg agcaccgcca ttgcctcgcg cagctcctcg cggcggtggg ggcccagggt
     4321 gtcggcgtgc gtcgaggcca ggtccgccag ctcccccggg atcacctcgc cctcgtcgcc
     4381 cagcgtgcag gtcagcaggt gcacggggtg accgacgcgg acgtagtgcg ccatcgccac
     4441 acccgtggtc agggtctcgt cgtcggggtg ggcatggacg aacagcagtg gcggaagcat
     4501 gtcgtgagct ccccgagtag cccgagcacc ctgcgggctc atcggacctc gatggtggca
     4561 aggtcgacga agccgcccat ggcctcgttg gcgctcaggc cggacaccgc gctgccggcg
     4621 acgtacagcg aacgacgttg ggccagcccc acgaaggcca cccgcttggc cagcctggca
     4681 tccaggtcgg cccaggcggt cgcctgcgcc gaggcgtccc gcaaggccag gatcctggtg
     4741 atctccgcat tgaccttgtc gtcctggaag ccacccaggt ccagaccctt accgctagcg
     4801 gtgaggttga cccggctgtc gaagagcgag gggatcaccg tcgaagctga gggccaggcg
     4861 ggtgcccagt tcgcccagaa aacgtcggtc gtggccgtgc gcccaggcag ggacacggtc
     4921 tggaagtagc tcttggtgac cggctggagc tggacgttga atccggcatc ggtccatcca
     4981 ctgctcagcg cggccatcgc cttgtcggac gtgggggtcg accggtacgc gacccgaacc
     5041 gtgaccggca gggtgagtcc cgacttacgc agcatggccc tggccgcggc ggggtcgccg
     5101 gaggatccgg caccgagcgg gtcatcgctg cgatgacccg gcagcgcggg accgatcagc
     5161 gtattggtcg gggctgctgt gctcgggccg cccaatgccg tcacatagcc gtctttgttg
     5221 gttgccaaag cgaacgcggt ccgaacctcg gcgttcttca tgacgcccga gaccaggttc
     5281 ggggccaggt agtcgacgaa ctggccggtg gggttcagca cgcgggcgct cagcgcaggg
     5341 tcggacagca ggtgctgctg caccgcgggc ggcgccgagt cgagcgacac cgaggccgct
     5401 cgctcgccgc gtccgtcgag gacctgctgc acggccgtct gcgactcggt cccctcgaca
     5461 tagctgatgg cgaccggctg ggccttgcgg atcgggtcag aggctttgtc ccacttgggg
     5521 tttcgcacga acgtgccacc cgagctcgca tcccacaagc ccttgagctg gtacggaccg
     5581 ctggcgaaca cggcatacgt gccggccttg cctcggtcct gggacttcct gaagggagcg
     5641 aagacgggca gcgccagtgc ctggttgaag tccgtcatgg acgtcgtgag gtggaaggtc
     5701 accgtgtccc cgctgcacgc caccgccttg tcgaaggctg ccaacccagc ggcgtcagtg
     5761 ggccccgcga aggtgctcgt gccgtcggcc ttgcgcggga tgtccaggta ggccagcggg
     5821 tagttgaggc cctcggtgga gaacggtgcg gcgaaggacc gggagatgcc gtactgcacg
     5881 tccgcgcagg agatcgacga accgtcctgc caggtgatgc ccttacgcag ggtgaaccgc
     5941 caggtcttca tcgaggcgtc cggggttccc gcgtcggtgg cgaggtcacc gaccaccgag
     6001 tgctgcccgg caccggagcc accagggggg aacgccgtca gcgtccggag aaaggtgcgg
     6061 cccgcaaagg cgatgtcctg aggcgcggag atgcgctgcg ggtcccaggt gtccaccggg
     6121 cccagagcga gcacggtcag gcggccatgc gagaccgagg aagcggctcc cgtagtgacg
     6181 ggactcgtgc aggccgcgag cgcggaagcc cctaggaggg ccaccgcgac gagggcagca
     6241 gaacgacgca ggcgtagtcg cacgtctgag gccgtcccgc ctcaggcgtt gcgcgcccgg
     6301 gaagccgcgc gggcgcgcag tgactggtcg agctcgacct tgcggatgcg gacagcctcg
     6361 ggggtcacct cgacgcactc gtcctcgcgg cagaactcca gcgactgctc caggctgagc
     6421 ttgcggggcg ggacgatctt ctcgaagttg tccgaggagg aggcgcgcac gttcgtgagc
     6481 ttcttctcct tggtgatgtt gacgtccatg tcgtccgcgc gggagttctc accgatgatc
     6541 atgccctcgt acacctcggt ggtgggctcc acgaagagcg tgccccgctc ctggaggttg
     6601 accatcgcgt atgccgtgac cacaccggtg cggtcggaca ccagggagcc gctggtgcgg
     6661 gtggtgatgg cgccgaacca cggctcgtag tcctcgaaca cgtggtgggc gatacccgtg
     6721 ccacgggtct cggtgaggaa caaggtgcgg aagccgatca gaccacgcga cggcaccagg
     6781 aactccatgc ggatccagcc ggtgccgtgg ttggtcatct gctccatgcg gcccttgcgg
     6841 gcggcgagga tctgagtgat cgggccgagg aactcctcgg gggtgtcgat ggtgaggcgc
     6901 tcgaccggct cgtgggtctt gccgtccacc tcgcgggtga ccacctgcgg cttgccgacg
     6961 gtcagctcgt agccctcgcg acgcatctgc tcgacgagaa tggccagcgc gagctcacca
     7021 cgaccctgca cctcccaggc gtccgggcgc tcggtcgtca ggacgcgcag cgagacattt
     7081 ccgacgagct ccttgtcgag gcggtccttg accatgcggg cggtgacctt ggagccccgc
     7141 acccggccca ccatcgggct ggtgttggtg ccgatcgtca tcgagatcgc gggctcgtcg
     7201 acggtgatga ccggcagcgg gatggggttc tcggcgtcgg cgagggtctc gccgatcatg
     7261 atgtcgggga tgcctgcgat ggcgatgatg tcaccggggc cggccgactc ggcgggcttg
     7321 cgctccagcg cctcggtcat gagcagctcg gtgatcttga cgcgctcgac cgtgccgtcg
     7381 accttgcacc aggcgacgtg ctggcccttg cggatcgtgc cgttgtgcac gcgcaacagc
     7441 gcgagacgac cgaggaagtt ggaggcgtcc aggttggtga cgtgggcctg cagcggggcc
     7501 tcgtcgtcgt agaccggagc ggggatggtg ctcaggatcg tctcgaacag ggcctcgagg
     7561 ttgtcggcgt ccggcaggcc accgttctcg gggcggttca tcgacgcggc gccgttcttg
     7621 gccgaggcgt agacgatcgg gaactcgatc tggtgctcgt cggcgtccag gtccatgaac
     7681 agctcgtaga cctcgtcgac gacctcggcg attcggctgt caggacggtc caccttgttg
     7741 atgcacagga ccaccggcat cttggcggcc agcgccttgc gcagcacgaa gcgggtctgt
     7801 ggcagcggcc cctcggatgc gtcgaccagc aggacgacac cgtcgaccat ggaaagccca
     7861 cgctccacct cgcccccgaa gtccgcgtgg cccggggtgt cgatgatgtt gatggtggcg
     7921 ccgtcgggca gcccggcgtc ggccgcagcc ttgcccgcat agtggatcgc ggtgttcttc
     7981 gcgaggatgg tgatgccctt ctcgcgctcg aggtcaccgg agtccatggc tcgctcgtcg
     8041 acgtgctggt gctcaccgaa cgcgcccgcc tgccagagca tcttgtcgac caacgtggtc
     8101 ttgccgtggt cgacgtgggc aacgatggca acattgcgga tgtcaccgcg ggtctgcatg
     8161 ggcatgagca ccattgtctc aggaattcga gcacgcgccg accacgggtg aggcacctca
     8221 ggccaggaac ccaccgatcg cgtccacgat gggtaggtcg gccggcagcc acggcacggc
     8281 atacaggtcg tgcttggaga gccagcgcag ctggtcgtgg tcctccagcg gggccggctc
     8341 gcccctggtg acctgggcca tccagaccgt catggcgaag tggtcgccca gcggccagcg
     8401 tccgcgaggc agcggcccgg gcacgggctg ccccaacacc acctcgactc cgagctcctc
     8461 ccgaacctca cggtggaccg cgtcgagcag ggtctcgccg ggatccacct tgccgcccgg
     8521 gaactcccat ccgccg
//
LOCUS       DASYFY010000499         2161 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1402945, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000499 DASYFY010000000
VERSION     DASYFY010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1402945"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..1279)
                     /locus_tag="VGN19_10070"
     CDS             complement(23..1279)
                     /locus_tag="VGN19_10070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7196276.1"
                     /translation="MSATPDATLLRRAAWSVSVQTAVAVAAVVVVVLLGVVLLFDHQQ
                     AIEIRDLVRQAAVTADDVNDPPQGVWLVRISGGSRTASPGSPTQLMDSPRLTQAPPGM
                     LSIDIGPGHWSAWAADRGRDRFVAVYDQSLHRAEEHRLLVATSLAGLLGVLLAGTIGL
                     VVGRRAVRPLGRALELQRRFVADASHELRTPLAVLHTRAQMIRRHLPAEAAAEQRTEV
                     DQLVGDTASMGEVLSDLLLAAQLEHTDLPARDVDLARVAGEVVASMGPYAVATGVRLD
                     LVGTQDADQDEFVVTGAPTALRRALTALVDNAIAHSEAGASVRVRLRTEPARGVGTGR
                     GVQAVCLTVEDDGDGLDARQASALTQRFARGAATSAGGGRRFGLGLALVDEVVRAHHG
                     QLAITGTPGVGSTFTLRLPAPVRSGR"
     gene            complement(1276..1944)
                     /locus_tag="VGN19_10075"
     CDS             complement(1276..1944)
                     /locus_tag="VGN19_10075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015071667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196277.1"
                     /translation="MTRGGRLLLVEDDPQLAAMLKQLLNEEGYVVSIGRDGQDGLHQA
                     LVQEFDVMVVDRGLPAIEGVDLVARLRARGIGAPILLLTARNTVADRVEGLDAGAQDY
                     LGKPFDVDELLARLRALLRPVSGLAEELPLGRGRLVVGENRVTGAADAMDVTLSPRET
                     ALLATMARRPTRIFTREELLESIFEGAETPGAVDTYVHYLRRKLGSGVVDTIHGVGYR
                     LGAS"
BASE COUNT          351 a          785 c          722 g          303 t
ORIGIN      
        1 cgtcccgaag gcgaccactg ggtcaccgac ctgacctgac tggtgcgggc agtcgcagcg
       61 tgaacgtcga acccactccg ggcgtgccgg tgatcgccag ctggccatga tgcgccctga
      121 ccacttcgtc caccagcgcc agccccaacc cgaaacgtcg gccgccgccg gcggaggtcg
      181 ccgcgccacg ggcgaaccgc tgggtcaaag cgctcgcctg tcgagcatct aggccgtcgc
      241 cgtcgtcttc aaccgtgaga cagacggcct gaacgcctcg gcccgtgccg accccgcgtg
      301 ccggctccgt acgcaaccgg actcggaccg aggcgccggc ctccgagtgg gcaatggcgt
      361 tgtccaccag ggcggtcaac gcacgacgca gggcggttgg cgcaccagtg accacgaact
      421 cgtcctggtc cgcgtcctgg gtacccacca ggtcaagacg caccccggtc gccacggcat
      481 acgggcccat gctggccacg acctccccgg cgactcgcgc aagatcgacg tctcgagcgg
      541 gcagatccgt gtgttcgagc tgcgccgcga gcagcaggtc ggagagaacc tcgcccatcg
      601 aggcggtgtc accgacgagc tggtcgacct cggtcctctg ctcggcggcg gcttctgctg
      661 gtaggtgacg ccggatcatc tgcgcgcggg tgtgcagcac agctagcggg gtgcggagct
      721 cgtgactggc atcggccacg aaacgtcgtt ggagctcgag tgcccggccc aggggcctca
      781 cggcccgccg ccccacgaca aggccgatgg tccctgccag caggacgccg agaaggccgg
      841 ccaaggaggt cgcgaccagg aggcgatgct cctcggcccg gtggagtgac tggtcgtaca
      901 ccgcgacgaa gcggtcacga ccccggtcgg ctgcccaggc gctccagtgc cccggcccga
      961 tgtcgatgga cagcattccc ggcggagcct gggtcagccg gggtgagtcc atgagctgtg
     1021 tcggtgaacc aggactggca gtgcgagatc cgccgctgat gcgcaccagc cacaccccct
     1081 gcggcgggtc gttgacgtca tcggcggtga ccgcggcctg ccgcaccagg tccctgatct
     1141 cgatcgcctg ttggtggtcg aacagcagca ccaccccgag cagcaccacc acgaccactg
     1201 cggcgacggc gacggcggtc tgcaccgaca ccgaccacgc ggcgcgccgt agcagcgtgg
     1261 cgtccggcgt ggcgctcatg acgccccgag ccggtagccg acgccatgga tcgtgtcgac
     1321 gacgccggag cccagcttgc ggcgcaggta gtgcacgtag gtgtcgaccg cgcccggggt
     1381 ctctgcccct tcgaagatgc tctcgagcag ctcctcccgg gtgaagatgc gcgtgggtcg
     1441 gcgcgccatc gtggccaaca gcgcggtttc gcgaggcgac agggtgacat ccatagcgtc
     1501 cgcggcgccc gtcacccggt tctcccccac caccagccgg ccgcgcccga gaggaagctc
     1561 ctccgcgagt ccggacacgg gccgaagcag cgctcgcaga cgcgccagga gctcgtcgac
     1621 gtcgaacggc ttgcccaggt agtcctgggc cccggcgtcc agaccctcca cccggtccgc
     1681 gacggtgttg cgagccgtca gcagaaggat cggcgcccca atgccccgcg cccgtaaccg
     1741 ggctaccagg tcgacgcctt cgatggcggg caggccgcga tcgacgacca tcacgtcaaa
     1801 ctcctgcacc agggcctgat gcaggccgtc ctgaccgtcg cgtccgatgg acacgacgta
     1861 tccctcttcg ttgagcagct gcttcaacat ggccgccaac tgagggtcgt cctccaccag
     1921 gagcagtcgg ccgcctcgtg tcacgacaca catcgtgaca tgctgttctc agaagcctct
     1981 gagaacagcg gagcatcatg acagcgtgac ctcccccgcc gacgcccgcg acgagttcgg
     2041 ccgagggcga ccggtcggga acagccgact cccgcaggtc cgggtcgaag ggctgcgaca
     2101 ccatcggtgg cgggcgcgca tcagcgatct cctcgaggtc ctggcggccg ccagtctggt
     2161 t
//
LOCUS       DASYFY010000500         9341 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1297136, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000500 DASYFY010000000
VERSION     DASYFY010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9341
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1297136"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..714
                     /locus_tag="VGN19_10080"
     CDS             142..714
                     /locus_tag="VGN19_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceD family protein"
                     /protein_id="HEV7196278.1"
                     /translation="MNHLDSRKALVFDAKSLGRRPGSMEQLQRTIEAPADLGTDVIGV
                     PQGAPIELELRLESVVEGVLVTGSARTTATGACVRCLDPVTLRVDAGFQELFAYADRA
                     AHHHEVGADEDEPEEHTLEGDLFDLEPVLRDAVVPALPFQPVCSADCPGLCSECGAHL
                     ADDPEHHHEVIDPRWAALQALSTDTEEKRN"
     gene            716..910
                     /gene="rpmF"
                     /locus_tag="VGN19_10085"
     CDS             716..910
                     /gene="rpmF"
                     /locus_tag="VGN19_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEV7196279.1"
                     /translation="MAVPKRKTSRSNTRSRRANWKTTPTTLTTCPQCKAQTQPHMACP
                     SCGTYKGRHYTPAERTEHQG"
     gene            1027..1806
                     /gene="rnc"
                     /locus_tag="VGN19_10090"
     CDS             1027..1806
                     /gene="rnc"
                     /locus_tag="VGN19_10090"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEV7196280.1"
                     /translation="MDESLLLRALTHRSYAYENGGLPNNERLEFLGDSVLGLVVTDTL
                     YTAHPDLPEGQLAKLRAAVVNMRALADVARTLGLGDHLLLGRGEESTGGRGKASILAD
                     TMEAVIGTVYLSAGMPAAAALVHHLLDPLMAHSATMGAGLDWKTSLQELAAASGAGVP
                     EYRVDEEGPDHEKTFHARAVVGQEVLGTGTGRSKKEAEQRAAELAWRELTARAASTAD
                     GGTTASALAATAATATAATATGKAATAATAEAADLPAGSTS"
     gene            1826..2710
                     /gene="mutM"
                     /locus_tag="VGN19_10095"
     CDS             1826..2710
                     /gene="mutM"
                     /locus_tag="VGN19_10095"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HEV7196281.1"
                     /translation="MPELPEVEVVRRGLADHVVGRTITTAEFRGLRVARRHLPGAADL
                     AARLADMKVESARRRGKYLWLVLRSADGSRQALLAHLGMSGQLLVEPADAPHEKHLHA
                     RFEFADGGPELRFVDQRTFGGMALSELTEDLVPETIAHIAPDPLEAAFDRAGVVRRMK
                     ARGSAVKRALLDQTLVSGVGNIYADEALWRAQVHGERLCSTLTRPSLGRVLDHARDVM
                     VEALGHGGTSFDALYVNVNGASGYFDRSLHAYGREGRPCDRCGTLIRREAFMNRSSYS
                     CPHCQPRPRARIVTDPGV"
     gene            2764..3060
                     /locus_tag="VGN19_10100"
     CDS             2764..3060
                     /locus_tag="VGN19_10100"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEV7196282.1"
                     /translation="MNDNGPVRAVIWVHGRVQGVGFRWWTRARALELGLVGHARNAGD
                     GRVEVVAQGEPEQVRQLVALLEERPSRHLRPGEVHTCVASWGPARTDLAGFLEK"
     gene            3173..3364
                     /locus_tag="VGN19_10105"
     CDS             3173..3364
                     /locus_tag="VGN19_10105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196283.1"
                     /translation="MAKALVGYRPVNDPRLMLETFELRRRVADLEHLVERLQQDNEQL
                     REDLRQPDVVGAGVPTIAG"
     gene            3361..3654
                     /locus_tag="VGN19_10110"
     CDS             3361..3654
                     /locus_tag="VGN19_10110"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEV7196284.1"
                     /translation="MTSSDTPPELAGLRASIDNIDAALIHLLAERFKCTQRVGELKAR
                     AGMPPADPAREEVQVARLRALADEEGLDPTFAEKFLGFVVAEVIHHHEAIAQG"
     gene            3811..7383
                     /gene="smc"
                     /locus_tag="VGN19_10115"
     CDS             3811..7383
                     /gene="smc"
                     /locus_tag="VGN19_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEV7196285.1"
                     /translation="MYVKSLTLKGFKSFASATTLRLEPGVTCIVGPNGSGKSNVVDAL
                     AWVMGEQGAKSLRGGKMEDVIFAGTAGRAPLGRAEVSLTIDNTDGALPIDYTEVTIAR
                     TMFRNGGSEYAINGTSCRLLDVQELLSDSGIGREMHVIVGQGQLDTVLRATPEERRGF
                     IEEAAGVLKHRKRKERALRKLESMEANLTRVNDLTGEIRRQLGPLGRQAEAARRAAVI
                     QADARDARLRLLADDLVQLTSTLEQEVADESALIAKRTEVEGSLADLRSRLTALEQQA
                     EQAAPELARAQDRWFRIQQLRDKLTATESLAAERVRLLSQDTADEQTTGRDPEELRAQ
                     AAEARAQEEALLAEVREAKTALEVAVAAREAAEQAYAAEQQRLQRLTRAAADRREGLA
                     KLAGQVGARRSRIEAGEAEIGRLQGTMAQSLERAAAAEREFTALEASVAVDEEGEEGL
                     DTAYEKAAAVLEQLEAEVERFREAERTAERDRTSAVARLEALELSLSRKDGAATLLAA
                     AQERHGIVGSVASLLQVSKGHEAAVAAALGWAGDALVVQSVGHAAEALVTLRDDDAGR
                     AAFLVGQTARSSDPSTWPPLEASAVWAREVVDAPASVRPAVEQLLDRVALVPDAAQAA
                     ALVAAGEGVTAVTADGDVFAPGFVRGGSAHAPSLIEIQSAVDETRDRVADATRRGEQA
                     RFALAEAADKHRAANEDVEAALESLHESDARMAAIAERLGQLGGTVRSARAEAERTER
                     AIADAQRALETDRAELTALSERLDEAGAEPTQADEPTTEERDRLENEARSGRARETEL
                     RLTLRTKEERARALKGRADSLEGAARNELAARERLAARQARRKREASVAEAVRRGAAY
                     AVFLVAGGLETAAQQRARAEQDRAERDQSLTQVRRETAGLQDELRDLTDTVHRDEVAR
                     TQQRLRIEAMQAKAVEELGVSPEALMEEFGPHQLVPFVAGPDDDPETVPEPAPYVREV
                     QEKRLRKADRALSSLGRVNPLALEEFAALEERHKFLTEQLEDLKKSKRDLLDIVREVD
                     ERVERVFTEAFHDTAAQFEGVFSRLFPGGEGRLTLTDPDNMLTTGIEVEARPPGKKIK
                     RLSLLSGGERSLVAVALLVSIFKARPSPFYIMDEVEAALDDANLGRLITLFEELRDSS
                     QLIVITHQKRTMEVADALYGVSMRGDGVTTVVSQRIRDVAAQSA"
     gene            7477..7740
                     /locus_tag="VGN19_10120"
     CDS             7477..7740
                     /locus_tag="VGN19_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEV7196286.1"
                     /translation="MVWLIFGMLICVGLAVAVVALVAIPARREGRELLTPQGEELVAS
                     VKEKTESTLDKTGDVIVAAKDKVADTVTGFGDNSDDVPRHRAS"
     gene            7861..9069
                     /gene="ftsY"
                     /locus_tag="VGN19_10125"
     CDS             7861..9069
                     /gene="ftsY"
                     /locus_tag="VGN19_10125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEV7196287.1"
                     /translation="MARVITQLWEWIVIAGALLAVLGGVLIGLMRTRGGRGPSAPAPR
                     HPDVLPGVGDDAEPPRDAPKRSVENAGSVDTLPEPSTLEPAAPEAPALERPESAAGRL
                     QRLRARLARSNSALGQGLLALLSRGGLDEQAWEEVEDTLIASDLGVEASTELVAKLRA
                     RVLVEGTRDEATVRSWLREDLLSLVDPSMDRSLADSRVDGRPAVMLVVGVNGTGKTTT
                     VGKLARVLVAQDKDVVLGAADTFRAAAADQLETWGARVGVPTVRSDREGADPAAVAFD
                     AVRAGAELEADVVLVDTAGRLHNKVGLMDELSKVKRVIEKQSPIDEVLLVLDATTGQN
                     GLRQAEVFAEVVNVTGIVLTKLDGTAKGGIVVSVQRKLGVPVKLVGLGEGPDDLAPFD
                     PEAFVDAILN"
     gene            9244..>9341
                     /locus_tag="VGN19_10130"
     CDS             9244..>9341
                     /locus_tag="VGN19_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEV7196288.1"
                     /translation="MTINTGDTAWVLASAALVLLMTPGLALFYGGMV"
BASE COUNT         1457 a         3227 c         3338 g         1319 t
ORIGIN      
        1 cgtagccggc cggtggctga ctcgttcact gtctgagatc ggcatgcatt tgggcgagag
       61 ggtgcggctc cggtaatctc atgcgtcggt ctacgtccgc gttgtggcgg caggccgagc
      121 cactcgacgt ctgctggagc catgaaccat ctcgattcgc gaaaggcctt ggtgttcgac
      181 gccaagagcc tgggtcgtcg acccggttcg atggagcagt tgcagcggac gatcgaggcg
      241 cccgccgacc tcggcacgga cgtgatcgga gtgcctcagg gcgcccccat cgagctggag
      301 ctgcggctcg agtccgtcgt cgagggcgtg ctggtcaccg gctcggctcg taccaccgca
      361 accggcgcct gcgtgcggtg cctggatccc gtcaccctca gggtcgacgc ggggttccag
      421 gaactgttcg cctacgccga tcgcgcggcc caccaccatg aggtgggagc cgacgaggac
      481 gagccggagg agcacactct cgagggcgac ctgttcgacc tcgagcccgt gctccgggac
      541 gccgtggtgc ctgcactgcc gttccagccg gtgtgttcgg ccgactgccc aggactgtgc
      601 tccgagtgtg gagcgcacct ggcggacgac cccgagcacc accacgaagt gatcgacccc
      661 aggtgggccg cgctccaggc gctgtccact gacaccgaag agaagaggaa ctgacgtggc
      721 tgtcccgaag cggaagacgt cgcgctccaa cacccgttcg cgtcgagcga actggaagac
      781 gacgccgacc acgctcacca cgtgcccgca gtgcaaggcc cagacccagc cccacatggc
      841 gtgcccgtcg tgcggcacgt acaagggccg tcactacacg cctgccgagc gcactgagca
      901 ccagggctga gtcgccctgc ctctcgcgtg agcaccactc agtccacggg gtctccccag
      961 gacagcgcga cccagcgacc cgtcgacggg ttcgccggat accttgctga ggtatccggc
     1021 gcaccgatcg acgagtcgct gcttctgcgt gccctgacgc atcgttcgta cgcgtacgag
     1081 aacggcgggc tgcccaacaa cgagcgcctg gagttcctgg gcgactcggt gctcggcctg
     1141 gtcgtcacgg acacgctgta caccgcgcat cccgacctgc cggagggcca gctggccaag
     1201 ctccgggccg cagtcgtgaa catgcgggcg ctcgccgacg tggcccgcac gcttggcctt
     1261 ggtgatcatc tgctgctggg gcgcggcgag gagagcacgg gaggacgagg caaggcgtcg
     1321 atcctcgccg acacgatgga agccgtcatc ggcaccgtgt atctgtccgc gggaatgccc
     1381 gccgcggctg ccctggtcca ccacctgctc gaccccttga tggcccactc cgcgaccatg
     1441 ggtgccggcc tggactggaa gaccagcctc caggagctgg ccgcggcctc tggcgccggt
     1501 gtgccggagt accgcgtgga cgaggaggga ccggaccacg agaagacctt ccacgctcgc
     1561 gcggtcgtgg gccaggaggt tctcggcacc ggtaccggcc gctccaagaa ggaggccgaa
     1621 caacgggccg ccgagctggc ctggcgggag ctcaccgctc gggccgcctc cacggcagat
     1681 ggcgggacga ccgcgtccgc gcttgctgcc accgccgcca cggccacggc cgccacggcc
     1741 acgggcaagg ccgccacggc cgctaccgcc gaggccgcgg atctgcccgc aggctctacc
     1801 tcctagccga gacccggcat accccgtgcc tgagctcccc gaggtcgagg tcgtccggcg
     1861 cggtctggcc gaccacgtcg tcgggcgaac catcaccacc gccgagttcc gcgggctgcg
     1921 tgttgcccgg cgccaccttc ccggggccgc ggatctggcc gcccgcctcg ccgacatgaa
     1981 ggtcgagtcc gctcggcgtc ggggcaagta cctctggctc gtcctgcggt cggcagacgg
     2041 ctcgcgccag gccctgctgg cccatctggg catgagcggc cagcttctgg tggagccggc
     2101 agacgctccg cacgagaagc atctgcatgc caggttcgag ttcgccgacg gtgggccgga
     2161 gctcaggttc gtcgaccagc gcaccttcgg tggcatggcg ctctcggagc tcacggagga
     2221 cctggttccc gagacgattg cgcacatcgc tccggacccg ctcgaagcgg cgttcgaccg
     2281 ggccggcgtg gtgcgacgaa tgaaggcacg aggatccgcg gtcaagcgag cgctgttgga
     2341 ccagaccctg gtctccggcg tggggaacat ctatgccgac gaggcgctgt ggcgcgccca
     2401 ggtgcacgga gagcggctgt gctcgaccct gaccagacca tccctcggcc gggtgctcga
     2461 ccacgcccgc gacgtcatgg tcgaggcgct tggccacggc ggcacgagct tcgacgcgct
     2521 gtacgtcaac gtgaacggcg cgtcgggcta cttcgaccgc tcgctgcatg cctacgggcg
     2581 cgagggccgg ccatgcgacc ggtgcggcac tctcatccgc cgcgaggcgt tcatgaatcg
     2641 ctcgtcgtac agctgtccgc actgccagcc ccgtcctcga gcccggatcg tcacagaccc
     2701 gggcgtgtag gacctgacac cgagcgacgc cgcgcggtac aactggaagc agaggtgagg
     2761 cgcatgaacg acaacggtcc ggtgcgggca gtgatctggg tgcacggtcg cgtgcagggc
     2821 gtggggttcc gctggtggac gcgcgctcgc gccctggagc tgggcctcgt cgggcatgcc
     2881 cgtaatgcgg gggatggcag ggtcgaggtc gtcgcccagg gggagccgga gcaggttcgc
     2941 cagctggtgg cgctcctcga ggagaggccc tcccgtcatc tgcgccccgg ggaggtgcac
     3001 acgtgcgtcg cgtcctgggg gccggcgcgc accgacctcg cagggttcct cgagaagtag
     3061 gcgacgacaa cctcccattg acccgcgggc cgggtggctg tcaccctgag agatgccccc
     3121 atctggggcc acgcacggcg cgaaccagat cgcctgcgga aagggagtcg acatggccaa
     3181 ggccctcgtg ggctatcgcc cggtgaacga cccgcgactg atgctcgaga catttgagct
     3241 gcgccgcagg gtggccgacc tcgagcatct cgtcgagcgt ctgcagcagg acaacgaaca
     3301 gctgcgtgag gacctgagac aaccagacgt cgtgggcgcc ggggtgccta cgattgctgg
     3361 gtgacttcgt ccgacacccc gcctgagctg gccggtctgc gcgccagcat cgacaacatc
     3421 gacgctgcgc tcatccacct gttggccgag cgcttcaagt gcacccagcg cgtgggcgag
     3481 ctcaaggccc gggcaggtat gccgcccgct gaccctgccc gtgaagaggt ccaggtcgcg
     3541 cgtcttcgcg cgctcgccga cgaggagggc ctggacccga ccttcgctga gaagttcctc
     3601 gggttcgtcg tcgccgaggt catccaccat cacgaggcca tcgcccaggg ctgaccgttt
     3661 ggtcgccctg gtcatagctg tcacatccgt cacgcctgcc acacccgcac ccggtggcgg
     3721 cgtggcgctg gtgagcgcca tgatccgcgc gcaggccgcc gctacagtga gccgcgatct
     3781 aacccccgca ccgaggagcc gagaccgctc gtgtacgtca agagcctgac cctgaagggc
     3841 ttcaagtcct tcgcctcggc gaccacgttg cggctcgagc ccggcgtgac gtgcatcgtc
     3901 ggcccgaacg gctcgggcaa gtccaacgtc gtcgacgcgc tggcctgggt catgggggag
     3961 cagggggcca agtccctgcg cggcggcaag atggaggacg tcatcttcgc cgggaccgct
     4021 ggccgcgccc cgctgggccg cgccgaggtc tccctgacga tcgacaacac cgacggtgcg
     4081 ctgccgatcg actacaccga ggtgacgatc gcacgcacga tgttccgcaa cggtgggtcc
     4141 gaatacgcca tcaacggcac ctcgtgtcgc ctgctggacg tccaggagct gctctccgac
     4201 tcggggatcg gtcgcgagat gcacgtcatc gtcgggcagg ggcagctgga caccgtgttg
     4261 cgggccacgc ccgaggagcg ccgggggttc atcgaggagg ccgccggagt cctcaagcat
     4321 cgcaagcgca aggaacgtgc gctgcgcaag ctcgagagca tggaggccaa cctcactcgc
     4381 gtgaacgacc tgacggggga gatccggcgg cagctcggac cgctcggcag gcaagccgag
     4441 gccgcgcgcc gggccgccgt gatccaggcc gatgcacgcg atgcccgact gcgtctgctc
     4501 gcggacgacc tcgtccagct cacgtccacc ctcgagcaag aggtggcgga cgagagcgca
     4561 ctgatcgcca agcgcaccga ggtggaaggc agcctggccg acctgcgctc gcgtctcacc
     4621 gccctcgagc agcaggccga gcaggccgct cccgagctgg cccgcgccca ggaccgctgg
     4681 ttccggatcc agcagctgcg cgacaagctg accgcgaccg agtcgctcgc cgccgagcgc
     4741 gtccgcctgc tcagccagga caccgccgac gagcagacca ccggtcgcga cccggaggag
     4801 ctgcgggccc aggcggccga agcgcgcgcc caggaagagg cgttgctcgc cgaggttcgt
     4861 gaggcgaaga ccgccctgga ggtggccgtt gctgcgcgcg aggcggcaga gcaggcgtat
     4921 gccgcggagc aacaacggct gcagcgcctc acccgagctg cggcggaccg ccgcgagggg
     4981 ttggcgaagc tcgccggcca ggtcggcgcg cgccgcagcc gcatcgaggc gggggaggcc
     5041 gagatcgggc gcctgcaggg gaccatggcg cagtcgctgg agcgcgctgc cgccgccgag
     5101 cgcgagttca ccgcgctgga ggcctccgtc gcggtcgacg aggagggtga agaggggctc
     5161 gatacggcct acgagaaggc cgccgcggtg ctcgagcaac tggaggccga ggtcgaacgt
     5221 ttccgcgagg ccgagcggac tgccgaacgc gaccgcacct cggccgttgc tcggctcgag
     5281 gctctggagc tcagcctgtc tcgcaaggac ggggccgcca cgctgctcgc ggcggcgcag
     5341 gaacggcacg gcatcgtggg gtcggtggcc tctctcctgc aggtgtccaa gggtcacgag
     5401 gccgcggtcg cggcggccct gggctgggcc ggcgacgcgc tcgtcgtcca gtctgtgggc
     5461 catgccgcag aggccttggt gacgttgcgg gacgacgacg ccggtcgtgc cgccttcctg
     5521 gtcgggcaga cggcgcgcag cagcgacccg tcgacctggc cgccgctgga ggcgtccgca
     5581 gtctgggcgc gcgaggtcgt cgatgctccg gcctcggttc gccccgcggt ggagcagctg
     5641 ctcgaccggg tcgcgctggt tccggatgcc gctcaggccg ctgcgctcgt ggcggcgggg
     5701 gagggcgtca ccgcagtcac tgccgatggt gacgtgttcg cgccgggctt cgtccgaggg
     5761 ggcagcgccc acgctcccag cctgatcgag atccagtccg cggtcgacga gacccgagac
     5821 cgggtggccg acgccacgcg ccgtggcgag caggcccggt tcgctctcgc agaggcggcc
     5881 gacaagcatc gcgccgcgaa cgaggacgtg gaggcggccc ttgagtcgct gcacgagtcg
     5941 gacgccagga tggcggccat cgccgagcgc ctcggacagc tgggcggaac cgtgcggtcg
     6001 gccagagcgg aggccgagcg caccgaacgg gcgatcgccg acgcccagcg cgcgctggag
     6061 acggaccgcg ccgagctcac ggcgctcagc gagcgtctcg acgaggccgg cgccgagccg
     6121 acgcaggccg acgagccgac gaccgaggag cgcgaccgcc tcgagaacga agcccgcagc
     6181 ggccgggctc gagagacgga gctgcggctc accctgcgca ccaaggagga gcgcgcccgc
     6241 gccctcaagg ggcgcgccga ctcgctggaa ggcgccgctc gcaacgagct cgcggcgcgc
     6301 gagcgacttg ctgcccggca ggcgcgacgc aagcgtgagg cgtccgtggc cgaggcggtc
     6361 cgacgcggcg cggcatacgc ggtgttcctg gtggccggcg gcctcgagac ggcggcgcag
     6421 cagcgggcac gggccgagca ggaccgcgcc gagcgagacc agtcactgac ccaggtgcgg
     6481 cgggagaccg ccggtctcca ggacgagctg cgcgacctca ccgacacggt gcaccgtgac
     6541 gaggtggccc gtacccagca gcggctgcgc atcgaagcca tgcaggccaa ggcggtcgaa
     6601 gagctcgggg tgtctccgga ggccctcatg gaggagttcg gaccccatca gctggtgccc
     6661 ttcgtcgcgg gcccagatga cgacccggag acggtgcccg agccggcgcc gtacgtccgc
     6721 gaggtccagg agaagcggct gcgcaaggcc gaccgggcgc tcagctctct tggccgggtc
     6781 aacccgctgg cgttggagga gttcgccgcc ctcgaggaac ggcacaagtt cctcaccgag
     6841 cagctcgagg atctcaagaa gtccaagcgc gacctgctcg acatcgtccg cgaagtggac
     6901 gagcgggtgg agcgcgtgtt caccgaggcc ttccacgaca cggcagccca gttcgagggc
     6961 gtcttcagcc ggctcttccc cggcggcgag ggtcggctca cgctgaccga ccccgacaac
     7021 atgctcacca ccgggatcga ggtcgaggca cggccgcctg gtaagaagat caagcggctc
     7081 tcgctgctgt ctggtggcga gcgctcgctg gtcgcggtgg ccctgctcgt gtccatcttc
     7141 aaggcccggc ccagcccgtt ctacatcatg gacgaggtcg aggccgccct cgacgacgcc
     7201 aacctcggcc ggctgatcac cttgttcgaa gagctccgcg actccagcca gctcatcgtc
     7261 atcacccacc agaagcgcac catggaggtg gccgatgccc tctatggggt gtccatgcgt
     7321 ggtgacggtg tgactactgt ggtttcgcag cgaatccgcg acgtcgcggc gcaaagcgcc
     7381 tagaccagga cgtatgccgc gtccacgcgg ctgtgaccca tctcagcgcg gcgggtcgat
     7441 ttgaggattg accctccagc ggtgcactct ggacccatgg tgtggctcat tttcgggatg
     7501 ctgatctgcg tgggactggc ggtcgccgtc gtcgcgctcg tcgccatccc cgcgcgccgc
     7561 gaggggcgtg agctactcac cccccagggc gaggagctgg tggcgtccgt caaggagaag
     7621 accgagtcca ccctcgacaa gaccggtgac gtcatcgtgg ccgccaagga caaggtcgcc
     7681 gacacagtca ccgggttcgg cgacaacagc gacgacgtcc cgcggcaccg agccagctga
     7741 gtcgctcgcc gctgccactg actgtggcat accactgctg cgcatgcctt ccaggccgtc
     7801 ccatccgggg cggcctttgc gctgcccgtg gacccggggc ggcaccacgc agatgagagg
     7861 atggcgcgcg tgatcactca gctgtgggaa tggatcgtca tcgccggtgc gctgttggct
     7921 gtgctcggtg gggtgctgat cggcctgatg cgcactcgag ggggccgcgg cccgtcggcg
     7981 ccggcgccac gacacccaga cgtgctgccc ggagtgggcg acgatgcgga accaccccgc
     8041 gacgccccca aacgctcggt cgagaacgcc ggctccgtcg acactctccc ggaaccgtcg
     8101 acgctggagc ctgctgcccc ggaggcgcca gcgctcgagc gccccgagtc ggcggccgga
     8161 cgactgcaac gactgcgcgc gcggctcgcc cgctcgaact ccgccctcgg gcagggactg
     8221 ctggcgttgc tgtcgcgtgg ggggctggac gagcaggcgt gggaagaggt cgaggacacc
     8281 ctgatcgcct cggacctcgg cgtcgaggcg agcaccgagc tggtcgccaa gctacgcgca
     8341 cgcgtcctgg tggaggggac ccgtgacgag gcgaccgtgc gcagctggct gcgggaggac
     8401 ctgctgtccc tggtcgaccc ctcgatggat cgttcgctgg cggactcccg ggtggacggt
     8461 cgaccggccg tcatgttggt tgtcggcgtc aacggcaccg gcaagacgac gaccgtgggc
     8521 aagttggcca gggtgctcgt cgcccaggac aaggacgtgg tgctgggtgc ggccgacacg
     8581 ttccgcgccg cagcggccga ccagctcgag acctggggtg cgcgggtggg agtgcccacc
     8641 gtgcgatcag accgggaggg tgccgatccc gcggccgtcg ccttcgacgc ggtcagggcc
     8701 ggggctgagc tggaggccga cgtggtcctg gtcgacacgg ccgggcgcct gcacaacaag
     8761 gtcggcctca tggacgagct gagcaaggtc aagcgggtca tcgagaagca gagccccatc
     8821 gacgaggtgc tgctggtcct cgacgcgacc accgggcaga acggcctgcg ccaggcggag
     8881 gtcttcgccg aggtcgtcaa cgtcaccggg atcgtcctga cgaagctcga cggcacggcc
     8941 aagggtggga tcgtcgtctc ggtgcagcgc aagctcgggg tcccggtcaa gctcgtcggg
     9001 ctgggcgagg gaccggacga cctcgcaccg ttcgaccccg aggcgttcgt ggacgcgatc
     9061 ctcaactgag ggatcgtcaa ctgagcgatc gtcaactgag cggtcccggc ctgcgaccgc
     9121 agttctcagc atgcgagacg cttcgggctc ggttacctga ttcttacgga gcctcaggcg
     9181 cgctaacacg cccgtaacat gcggagcccc ggcctgaaac gtggcgccgc cacagttctg
     9241 ggcatgacaa tcaacaccgg cgacaccgct tgggtcctgg ccagtgccgc tctggtgctg
     9301 ctcatgaccc ccggtctagc cctcttctat ggcggcatgg t
//
LOCUS       DASYFY010000501         1900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_823293, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000501 DASYFY010000000
VERSION     DASYFY010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823293"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VGN19_10135"
     CDS             <1..449
                     /locus_tag="VGN19_10135"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEV7196289.1"
                     /translation="DVTYGDDPLDVVRDVVRTLADGAHAAVQAGIPRERILVDPTLDF
                     GKTTAHSLEVLRHTADVVALKFPVLQAMSRKDFVGEALDLPAEERLEGSLAATAVAAW
                     LGATVFRAHDVRATRRVVDMVATIRGDRRPRLALRGTRRDAGENGS"
     gene            676..879
                     /locus_tag="VGN19_10140"
     CDS             676..879
                     /locus_tag="VGN19_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014144190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEV7196290.1"
                     /translation="MAQGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAIQSNGYRSLEE
                     AQRVEFEVTQGPKGPQADAVRPL"
     gene            complement(989..>1900)
                     /locus_tag="VGN19_10145"
     CDS             complement(989..>1900)
                     /locus_tag="VGN19_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEV7196291.1"
                     /translation="TVLISLPRNLERVPLPASSPLRNVYPSGSYGRPTCLHQAANDEC
                     MLNAIWTEADTYKQEHPSAYAGEQSAGRYETRQVISEVLGLKIAYTVVVDLHGFEQLV
                     DAMGGVTVNVKLGPSGRLPIGGYQSHVDPTKVVNNEGWFKAGVQKLNGHYALWYARAR
                     ATDSDYYRMQRQRCVIRAVVQQVNPGAMLGKYAELAKIAKDNIYTDIPADNLMAFVDL
                     MERVQKSTISSLPLTPEAGVNTARPDYEKIRAMVKAALAPPPAPAPKPSGSQTATPTP
                     STPSTPTPTPSTPSGGATSAPTADECA"
BASE COUNT          282 a          589 c          689 g          340 t
ORIGIN      
        1 tggacgtcac ctacggcgac gaccccctcg acgtcgtgcg ggacgtggtg cgcaccctgg
       61 ccgacggcgc ccacgcggcg gtgcaggccg gcatacctcg tgaacggatc ctcgtggacc
      121 cgacgctcga cttcggcaag accacagcgc actccctcga ggtgctgcga cacacggctg
      181 acgtcgtggc gctcaaattc cctgtgctgc aagcgatgtc gcgcaaggac ttcgtcggtg
      241 aggcactcga cctgcccgcc gaggaacgtc tcgaggggtc gctcgcggcc accgcggtcg
      301 cggcgtggtt gggtgccacg gtcttccgtg cgcacgacgt gcgagcgacc cgccgggtgg
      361 tcgacatggt cgcgacgatc cgtggcgatc ggagacctcg actggcactg cgaggcaccc
      421 ggcgtgacgc cggggagaac ggctcctgaa cgcccagaag atgctgtcat ctgacgggcc
      481 gaccggtcgg tattctgcta ggttcgtcgc ggttgcagtt gcagttcctc gtcgtcgagc
      541 agggcccgtc atcagcaacg atgacgggat ttcttttcga catcggtggg ttcgcccgtc
      601 gagtggggtc gaagcggcag cttgggatgc gcgaggtgcg ttgtcccaca cgctaaagaa
      661 ggaagagtta cccgtatggc acagggcacc gtcaagtggt tcaacgctga aaagggcttc
      721 ggcttcatcg cccaggacgg cggcggcccc gacgttttcg tccactactc ggccatccag
      781 tcgaacggct accgttcgct ggaagaggcg cagcgagtcg agttcgaggt cacgcagggt
      841 cccaagggcc cgcaggccga cgcagttcgc ccgctctgat cgatagggat caacagcaac
      901 gagcgacacc aagacgtcgt ttgtgacaag gccccccggc ttcggccggg gggccttgtt
      961 gttgttgctg ttgcggaccg aggtcagctc acgcgcactc gtccgccgtc ggggccgagg
     1021 tcgccccgcc ggacggcgtc gagggggtcg gcgtcggggt gctcggcgtc gagggggtcg
     1081 gcgtcgcagt ctgggagccg ctcggcttgg gcgcgggggc aggcggggga gcgagcgcgg
     1141 ccttcaccat ggcgcggatc ttctcgtagt cggggcgcgc cgtgttcacg ccggcctcgg
     1201 gagtgagtgg aaggctgctg atcgtcgact tctgcacgcg ctccatcagg tccacgaacg
     1261 ccatgaggtt gtcggcgggg atatcggtgt agatgttgtc cttggcgatc ttggccagct
     1321 cggcgtactt cccgagcatc gccccggggt tgacctgctg gacgaccgcg cggatgacac
     1381 agcgctggcg ctgcatccgg tagtagtcgc tgtcggtggc gcgggctcgg gcgtaccaca
     1441 gcgcatagtg accgttgagc ttctggacac cggccttgaa ccagccctcg ttgttgacca
     1501 ccttggtggg gtcgacgtgg ctctggtagc ccccgatggg caggcgcccg ctcgggccga
     1561 gcttcacgtt gacggtgacg ccgcccatgg cgtcgacgag ctgctcgaag ccgtgcaggt
     1621 ccacgaccac ggtgtaggcg atcttgaggc cgagcacctc actgatcacc tggcgggtct
     1681 cgtagcggcc ggcgctctgc tcgccggcgt aggccgaggg gtgctcctgc ttgtacgtgt
     1741 ccgcctcggt ccagatggcg ttgagcatgc actcgtcgtt cgctgcctgg tgcaggcagg
     1801 tcggacggcc ataggagccg ctggggtaga cgttgcgcag ggggctggag gccggcagcg
     1861 ggaccctctc gaggttgcgc ggcagtgaga tgagaacggt
//
LOCUS       DASYFY010000502         2892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_403305, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000502 DASYFY010000000
VERSION     DASYFY010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403305"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..844)
                     /locus_tag="VGN19_10150"
     CDS             complement(56..844)
                     /locus_tag="VGN19_10150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196292.1"
                     /translation="MTATTITHPVAAPRADTQGATFSDIPFSRLVRVEWSKATDTRAA
                     RWLLIALAVSTGGLMLAPLLSPSSIEQSYTSYLGYAAIALSILLPVVAILTLTSEWSQ
                     RTALATFTQEPRRMRVVRAKITVSLILGLSAAAFGGLVTAAGLALAAASGRTLDSNLN
                     AGLLLAFLLYVVLNVMTGVALGALVHNSAAAIVASFVLPISFGLLGQASSWVANWLDY
                     SSAFTWLLHGEWSAHGSQILTSVALWVAVPLAAGLVRTARREVG"
     gene            complement(841..1755)
                     /locus_tag="VGN19_10155"
     CDS             complement(841..1755)
                     /locus_tag="VGN19_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7196293.1"
                     /translation="MITATALTKSYGNARVVSGVSLHCEPGTITGFLGPNGAGKSTTL
                     KMIVGLARPDHGTSTIDGRPFIELANPTRVVGALLDPSAMHVGRTGRATLTIAARMAG
                     VPTTRVEELLDRVGLADAADRRVGEYSLGMRQRLGIAQTLVGEPQVLILDEPANGLDP
                     EGIAWMRGLLRNFADRGGTVLLSSHLLHEVQATVDHLVVISQGAVVASGKLADLLASS
                     SLLLRTPDPDGLARALRAAGIDYTPGPDQTFTVDLQGGRVTTEMVARAALDQQVLLTE
                     LRQSDTGGLEQLFFSLTAKTTQPQEAAA"
     gene            complement(1790..2101)
                     /locus_tag="VGN19_10160"
     CDS             complement(1790..2101)
                     /locus_tag="VGN19_10160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196294.1"
                     /translation="MTAPTASTVPGHPPAVAGPPSKHQLALMIWLAVFPTLTILNLVL
                     GGWLGGQPAVLRTFVLATIAVPIVIYGLMPHLHSVRKHLIARHANRGSDPAIARQQFP
                     K"
     gene            complement(2098..>2892)
                     /locus_tag="VGN19_10165"
     CDS             complement(2098..>2892)
                     /locus_tag="VGN19_10165"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7196295.1"
                     /translation="LAAGRDEVTGYGGEVVSGTATDLVPDGHGGFWARIDDGQPISVR
                     RLLVTTGLRDELPDIAGLRDRWARDVLHCPYCHGYEVRDRQLGVIGAGPGDVRYAQIV
                     RQWTHDLVYFTQPDTLSATERAELLARAIGVVEGTIDQLVIDGGQLRGVLMSDGCVVR
                     RDVLFVPPRFIPNNDLLVRLGCLVDRDGWVVADHTGRTSVPGVWAAGNVIDPRAQVIT
                     AAGAGSAAAIAINADLVDHDVLDAVLDLNNGPLPRPTTNAHPEETP"
BASE COUNT          458 a          879 c         1098 g          457 t
ORIGIN      
        1 cgcgcagctc ggtacggggt gccgcgaccc gctcacgcct cctgggtgcg gacggtcagc
       61 cgacctcacg gcgcgcagtg cgcaccagcc cggcagcgag agggacggcc acccagagag
      121 caaccgaagt gaggatctgg gaaccatgcg ccgaccactc accgtggagc agccacgtga
      181 acgcgctgga gtagtcgagc cagttcgcca cccacgagga ggcctgcccg agcaagccga
      241 aggagatggg tagcacgaat gaggcgacga tcgccgctgc ggagttgtgc acgagtgcac
      301 cgagcgcgac cccggtcatg acgttgagga cgacgtagag caggaaggcg agaagcaggc
      361 ctgcgttgag gttcgagtcg agtgtccggc ctgaggcagc ggccagggcg agaccggcgg
      421 ccgtgacgag cccgccgaac gcggctgcgc tgagaccgag gatcagtgaa acggtgatct
      481 tggctctgac gactcgcatc cgtcggggtt cctgggtgaa cgtggcgagg gcggtgcgtt
      541 gactccattc gctggtcagc gtcaggatcg ccactacggg cagcagaatg ctgagcgcga
      601 tcgcggcgta gccgaggtag ctggtgtagg actgctcgat gcttgagggg gagagcagag
      661 gcgccagcat gagcccgccc gtggataccg ccagcgcgat cagcagccag cgggccgcgc
      721 gtgtatcggt ggccttgctc cattcgacgc gtaccagccg actgaatggg atgtcggaga
      781 aggtggctcc ttgggtgtcc gcgcgtgggg cggcgacggg gtgagtgatc gtggtggcgg
      841 tcatgctgct gcctcctgtg gctgtgtggt ctttgcggtg agtgagaaga agagctgctc
      901 gagcccgccg gtgtcggact ggcgcagctc ggtgagcagc acctgctgat cgagcgcggc
      961 gcgggcgacc atctcggtgg tgacccggcc gccctgcagg tccacggtga acgtctggtc
     1021 gggacccggc gtgtagtcga tgccggcggc gcgcagcgcg cgtgccaggc cgtctgggtc
     1081 gggggtgcgc aacagcaggc tggagctggc caggagatcg gccagcttgc cggaggcgac
     1141 gacggcgccc tgggagatga cgacgaggtg gtcgacggtg gcctggacct cgtgcagcag
     1201 atggctggac agcagcacgg tcccgccccg gtcggcgaag ttgcgtagga gtccacgcat
     1261 ccaggcgatg ccctcggggt ccagtccgtt ggctggttcg tcgaggatca gcacctgcgg
     1321 ttcacccaca agggtctgcg cgatcccgag ccgctgccgc atgccgaggg agtactcgcc
     1381 gacccgccga tcggccgcgt cggcgagtcc gacgcggtcc agcagctcct ccactcgcgt
     1441 ggtcgggact ccggccatgc gggcggcgat cgtgagcgtc gcgcgaccgg ttcgtcccac
     1501 gtgcatcgcg gagggatcga gcaacgctcc gaccacccgg gtcgggttgg ccagctcgat
     1561 gaacgggcgg ccgtcgatgg tcgacgtgcc gtgatcgggg cgcgcgagac cgacgatcat
     1621 cttcagggtc gtggactttc ccgcgccgtt gggtccgagg aagccggtaa tggtgccggg
     1681 ctcgcagtgc agcgacaccc cactgacgac ccgggcgttg ccgtagctct tggtaagtgc
     1741 ggtggccgtt atcatgcgat gtcctttgga tcggtggtta tggcgttcgc tattttggaa
     1801 attgctgccg cgctatggcc gggtcagatc ctctgttcgc gtggcgcgcg atcaagtgct
     1861 tgcgaacgct gtggaggtgc ggcatgaggc cgtagatgac gatcggtacg gcgatggtgg
     1921 ccaggacgaa cgtccgcagg actgccggct gaccgcccag ccacccgccg aggacgaggt
     1981 tgaggatggt gagtgttggg aagacagcca gccagatcat cagggccaac tggtgtttgc
     2041 tcggggggcc agcgaccgca ggcgggtggc ctgggacggt gctcgctgtg ggggcggtca
     2101 tggtgtctcc tccgggtggg cgttcgtggt tggtcggggt agggggccgt tgttgaggtc
     2161 gaggacggca tcgagcacgt cgtggtcgac gaggtcggcg ttgatcgcga tcgcggccgc
     2221 tgagcccgcg ccggcagccg tgatcacctg agcgcgcggg tcgatgacat tgccagcggc
     2281 ccagacgccg ggaacgctgg tacgtcccgt gtggtcggcg acgacccagc cgtcacggtc
     2341 gacgaggcag ccaagcctga ccaggaggtc gttgttcgga atgaagcgag gcggcacgaa
     2401 gagcacgtca cggcggacga cgcagccgtc gctcatcagt acgccgcgaa gctggccgcc
     2461 gtcgatgacg agctggtcga tggtgccttc gacgacaccg atggcgcgcg cgagcagctc
     2521 cgcccgctcg gtggcgctga gagtgtcggg ttgggtgaag tacacgaggt cgtgagtcca
     2581 ctggcggacg atctgcgcgt agcggacgtc acccggaccg gcgccgatca caccgagttg
     2641 gcggtcgcgg acctcatagc cgtggcagta cgggcagtga aggacgtcgc gcgcccatcg
     2701 gtcccgcagc cccgcgatgt ccggcagctc gtcccgaagg ccggtggtga ccagcagacg
     2761 ccgcaccgag atcggctgcc cgtcgtcgat gcgggcccag aacccgccgt gcccgtccgg
     2821 aaccaggtct gtggcggtgc cgctgacgac ctcaccgccg tatcccgtga cctcgtcgcg
     2881 gccggccgcc ag
//
LOCUS       DASYFY010000503         2837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_719083, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000503 DASYFY010000000
VERSION     DASYFY010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_719083"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..1307)
                     /locus_tag="VGN19_10170"
     CDS             complement(81..1307)
                     /locus_tag="VGN19_10170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEV7196296.1"
                     /translation="MSVRGRLRRELLRVPGALPAARLTLETIRICLRYRVTGLASEAG
                     FFMLLSLPPLLLGLFGGVGYLGSWLGHDIVDQLVKGIQTFAERYVLQGVVEDTIVPTV
                     NDVFKKGRFDLISVGFLLSVWSGSRALNVFVDTISIMYGQSGVRGIVRTRALSLTLYF
                     LSLVVGIVVIPLVVIGPAWLGQLLPEGLRFLTLLYWPVVTVLAVASVATLFHISTPRR
                     TPWLRDVPGSVLTLVIWALASFVLRGTLTASIGGGTSIYGPLSTPIVLLIWLYALAIA
                     VLIGAALNAAIRTLWPVEERPSLRAQVVVYVKERMATRRSARAVSALGLGSRGSTGRD
                     PGAEAPQETDEESEAVLVATEGELAGSDTCLGESVRGLRDEARKPLTPLPTPPESSQF
                     EEGKQDQILSVRTRSG"
     gene            1339..>2837
                     /locus_tag="VGN19_10175"
     CDS             1339..>2837
                     /locus_tag="VGN19_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7196297.1"
                     /translation="MPTHAVTNQVPPLPDYNTVESQPALREGLQRWLAPAAYDEISAL
                     GARAGSHQTREWAVQANEHEPVLQTHSPTGERRDEVEFHPAWHSLMEVAVGAGLTAEP
                     WTQPAGTGAHVRRAGGFIAWSETEQGHLCPVSMTYAAAPALAANPALAQRWVPALASR
                     SYDFGLRPVAEKRGAIAGMGMTEKQGGSDVRANTTVAVANPGGPLGGGDTYQLTGHKW
                     FCSAPMSDAFLVLAQTGAGVGCFLVPRVLDDGTRNPFALQRLKDKLGNRSNASSEVEF
                     DGTWGVRVGDEGRGIRTILDMVAATRLDCILGSASTMRAALVRAVHHTRHRSTFGAVL
                     IDQPLMQNVLADLALESEAATTLGLRLAHAVDEGDTALSRLGVAVGKYWVCKRTSPMV
                     AEALECLGGNGYVEENGLARLYREAPLNSIWEGSGNVNALDVLRAVSREPASVEAFVT
                     EVSKASGHSPALDAAIEHVAGLVTYAAEPGAQAGARRIVEQLALTLQAAL"
BASE COUNT          473 a         1051 c          921 g          392 t
ORIGIN      
        1 gacctcaacc ttggcaaggt tgcgctctac caactgagct acatccgcat tacacgcgct
       61 attggtgtcg agcgggattt tcacccgctg cgcgtgcgga cagacagtat ctgatcttgc
      121 ttgccctctt caaattggct gctctcgggc ggcgttggca ggggtgtcag cggcttgcga
      181 gcctcgtcgc ggagccccct caccgactca cccaggcacg tatccgatcc ggcgagttcc
      241 ccctccgtcg cgaccaggac cgcctccgac tcctcgtccg tctcctgcgg cgcctcggcg
      301 cccgggtcac gtccggtgga cccccgcgac cccagtccca gggcactcac ggctcgcgcg
      361 gagcggcggg ttgccatccg ttccttgacg tacacgacga cctgcgcccg cagcgatggc
      421 cgctcctcca ccggccacag cgtccggatg gcggcgttca aggcggcccc gatcaacaca
      481 gcgatggcca gggcgtacag ccagatgagc aggacgatgg gggtcgacaa cgggccgtag
      541 atcgacgtcc cgccgccgat cgacgccgtc agcgtgcccc gcaggacgaa cgacgcgagc
      601 gcccagatga ccaacgtcag caccgaaccg gggacgtcgc gcagccacgg cgtccgtcgg
      661 ggcgtcgaga tgtggaacag cgtcgccacg ctggcgacgg ccaacacggt gaccacgggc
      721 cagtacagga gggtcaggaa cctcagcccc tccgggagca gctgacctag ccaggcgggt
      781 ccgatgacga ccagcggaat cacgacgatc cccacgacca gtgagaggaa gtacagcgtc
      841 agcgacaagg ccctcgtccg gacgatccct cgcaccccgg actgtccgta catgatcgag
      901 atggtgtcga caaacacatt gagggcccgc gatcccgacc acacggagag caggaagccc
      961 accgagatga ggtcgaagcg gcccttcttg aacacgtcgt tgacggtcgg gacgatcgtg
     1021 tcctcgacca cgccctgcag cacgtaccgc tcggcgaacg tctggatccc cttgacgagc
     1081 tggtcgacga tgtcgtgacc gagccagctg cccaggtagc cgacgccgcc gaaaagcccc
     1141 agcagcagcg gcgggagcga caggagcatg aagaaccctg cctccgacgc gagcccggtc
     1201 acgcggtacc gcaaacagat ccgaatggtc tccagggtca gtcgtgcagc gggcagcgcg
     1261 cctgggacgc gcagcagctc gcgacgtagc cgacccctga cactcacccg gccacggtat
     1321 cccggcatag tgggagccgt gcccacccac gccgtgacca accaggtgcc cccgctcccc
     1381 gactacaaca ccgtcgagag ccaacctgcg ctgcgagagg gtctgcagcg gtggctcgcc
     1441 ccggcggcat acgacgagat ttcggccctc ggggcccgcg ccggctccca ccagacccgc
     1501 gaatgggccg tccaggcgaa cgagcacgag cccgtcctgc aaacccactc ccccaccggc
     1561 gagcgccgcg acgaggtcga gttccacccc gcctggcact ccctgatgga ggtcgccgtc
     1621 ggcgccggac tcaccgccga gccgtggacc caaccagctg ggacgggcgc gcacgtgcgt
     1681 cgcgccggcg gcttcatcgc ctggtccgag accgagcagg gtcacctctg ccccgtctcc
     1741 atgacgtatg ccgcggcgcc ggccctcgcg gcgaaccccg cgctcgcgca gcgctgggtt
     1801 ccggcgctcg cctctcgctc ctacgacttc ggcctgcgcc cggtggccga aaagcgcggc
     1861 gcgatcgcgg gcatgggcat gacggagaag cagggcggct ccgacgtccg ggctaacacg
     1921 accgtcgccg tggcgaaccc gggtggcccc ctcgggggcg gcgacaccta ccagctcacg
     1981 gggcacaagt ggttctgctc ggcgccgatg agcgacgcct tcctcgtcct cgcacagacc
     2041 ggcgccggcg tgggctgctt cctggtcccc agggtgctgg acgatggcac gcgcaatccg
     2101 tttgcgctgc aacggctcaa ggacaagctg ggcaaccggt ccaacgcctc ctccgaggtc
     2161 gagttcgacg ggacctgggg cgtccgcgtc ggcgacgaag gccgcggcat ccgcacgatt
     2221 ctggacatgg tggcggccac ccgcctcgac tgcatcctcg gttcggcctc gaccatgcgc
     2281 gcggccctgg tgcgcgcggt ccaccacacc cgacaccgct ccaccttcgg cgctgtcctg
     2341 atcgaccagc ccctcatgca gaacgtgttg gccgacctcg ccctggagtc cgaggccgcc
     2401 acgacacttg gtctgcggct ggcgcacgct gtcgacgagg gcgacacagc cctctcacgc
     2461 ctcggggtcg cagtgggcaa gtactgggtg tgcaagcgca cctcgccgat ggtggccgag
     2521 gccctggaat gcctgggggg caacggctac gtcgaggaga acggcctggc ccgcctctac
     2581 cgcgaggccc cgctcaactc gatctgggag ggctccggca acgtcaacgc cctcgacgtg
     2641 ctgcgcgccg tcagccgcga gcccgcctcc gtcgaggcgt tcgtcacgga ggtgagcaag
     2701 gcttccggcc actcccccgc gctcgacgcc gccatcgagc atgtcgcagg actggtgacg
     2761 tatgccgccg aaccaggcgc gcaggccggc gcccgtcgga tcgtcgaaca gctcgcgctc
     2821 acgctgcagg cggcgct
//
LOCUS       DASYFY010000504         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_508715, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000504 DASYFY010000000
VERSION     DASYFY010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508715"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1743
                     /gene="ileS"
                     /locus_tag="VGN19_10180"
     CDS             <1..>1743
                     /gene="ileS"
                     /locus_tag="VGN19_10180"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEV7196298.1"
                     /translation="ARASFPDLEQEVLGRWRERDVFAQSLARRADAPSWGFYEGPPTA
                     NGAPGTHHVLSRVFKDIFPRYRTMRGYRVERKGGWDCHGLPVELAVEAELGMTAKADI
                     ERYGIAEFNARCREKVLSHVEDWNRLTERIGFWIDLDDAYRTLDPAYVESVWWALKEI
                     DRRGLLYEKLKVVPYCTRCGTTLSSHELGQPDVYRDVVDPSVYARLPVTKPTARTQAG
                     DELLVWTTTPWTLVSNAAVAVDADLTYVRARTPGGPVQIVAEALVQRVLGDQAEVLER
                     FPGSELVGAGYEPPFPFIPSDAYGPKGRTVLPADFVTAEDGTGLVHTAVAFGETDFRL
                     GEQQGLTVVNPVRSDGTYDERIGPYAGRWVKDVDEDLIADLEARDRVLRAEPYEHSYP
                     HCWRCHTPLIYYAKPSWYIATSQVKDRLLGANESVTWHPEHVKHGRFGKWLEGNVDWA
                     LSRERYWGTPLPVWRCEHGCTKVVGSLAELQELSGVELSDPHRPFVDDVTFPCENCGE
                     DMHRVPEVIDVWFDSGSMPFAQFHAPHADLERFEEHFPADFICEALDQTRGWFYSLLA
                     ISALLFDRSPYRNVV"
BASE COUNT          262 a          619 c          577 g          285 t
ORIGIN      
        1 cgctcgcgcg tcgtttcccg acctcgagca ggaggtgctg ggtcgctggc gcgagcgcga
       61 cgtgttcgcg cagtcactgg cccgccgcgc cgacgccccc agctggggct tttacgaggg
      121 cccgcccacc gccaacggcg cgcccggcac gcaccacgtc ctgagccggg tgttcaagga
      181 catcttcccc cgctaccgca ccatgcgcgg ctaccgggtg gagcgcaagg gcggctggga
      241 ttgccacggc ctcccggtgg aactggcggt cgaggccgag ctcggcatga cggccaaggc
      301 cgacatcgag cgctacggca tcgcggaatt caacgcccga tgccgtgaga aggtcctcag
      361 ccacgtcgag gactggaatc gcctcaccga gcggatcggc ttctggatcg atctcgatga
      421 cgcctatcgg acgctcgacc ccgcctacgt ggagtcggtc tggtgggcgc tgaaggagat
      481 cgaccggcgc ggcctgctct acgagaagct caaggtcgtg ccgtactgca cccgctgcgg
      541 cacgacgctg tccagccacg agctcggtca gcccgacgtg tatcgcgacg tcgtcgaccc
      601 gtcggtctac gcacggcttc cggtcaccaa gcccaccgcc cgcacccagg ccggtgacga
      661 gctgctcgtg tggacgacca ccccctggac gctcgtctcc aacgccgccg tggccgtcga
      721 cgccgacctg acctacgtgc gcgcccggac tcccggaggg ccggtccaga tcgtggccga
      781 ggctctcgtg cagagggtgc tcggcgacca ggccgaggtg ctcgagcgct tccccggctc
      841 agagctggtc ggcgcgggct acgagcctcc gttcccgttc atccccagcg acgcctacgg
      901 gcccaagggc cgcaccgtcc tgccggccga cttcgtgacc gccgaggatg gcaccggcct
      961 cgtccatacc gcggtcgcct tcggcgagac cgactttcgt ctcggcgagc agcagggtct
     1021 caccgtggtc aacccggtgc gcagcgacgg gacctatgac gagcggatcg gcccctacgc
     1081 ggggcgctgg gtcaaggatg tcgacgagga cctgatcgcc gacctggagg cgcgtgaccg
     1141 ggtgctgcgc gccgagccct acgagcactc ctatccgcac tgctggcgct gccacacgcc
     1201 gctcatctac tacgccaagc cgtcctggta catcgccacc agccaggtca aggatcggct
     1261 gctgggggcc aatgagagcg tcacctggca cccggagcat gtcaagcacg gtcgctttgg
     1321 caaatggctg gagggcaatg tggactgggc cctgtcgcgc gagcgctact ggggaacgcc
     1381 gctcccggtc tggcgctgcg agcacggctg cacgaaggtc gtgggcagcc tggccgagct
     1441 gcaggagctc tctggcgttg agctgtccga cccccatcgt ccgttcgttg atgacgtgac
     1501 cttcccgtgc gagaactgcg gggaggacat gcaccgtgtc cccgaggtca tcgacgtgtg
     1561 gtttgactcg ggctcgatgc cgttcgccca gttccacgca ccgcatgcgg acctcgagcg
     1621 gttcgaggag cacttcccgg ccgacttcat ctgcgaggcc ctcgatcaga cccggggatg
     1681 gttctactcg ctgctggcca tctcggccct gttgtttgac cgctccccgt atcgcaacgt
     1741 cgt
//
LOCUS       DASYFY010000505         3935 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1350677, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000505 DASYFY010000000
VERSION     DASYFY010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3935
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1350677"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..196
                     /gene="rpmI"
                     /locus_tag="VGN19_10185"
     CDS             2..196
                     /gene="rpmI"
                     /locus_tag="VGN19_10185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013770804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEV7196299.1"
                     /translation="MPKMKTHSGAKKRFRITGTGKVMREQANGRHLLEHKSSRYTRSI
                     AGDVEVSKPDTKKVKKLLGR"
     gene            272..649
                     /gene="rplT"
                     /locus_tag="VGN19_10190"
     CDS             272..649
                     /gene="rplT"
                     /locus_tag="VGN19_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEV7196300.1"
                     /translation="MARVKRAVNAQKKRRVVLERASGYRGQRSRLYRKAKEQVTHSLG
                     YAYRDRRARKGDFRRLWIQRINAGARANGMTYNRFIQGLKAAEIEVDRRMLAELAVSD
                     EAAFTALVEIARANVPATADATA"
     gene            725..1531
                     /locus_tag="VGN19_10195"
     CDS             725..1531
                     /locus_tag="VGN19_10195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEV7196301.1"
                     /translation="MLTNSRSDRVKAVRALSRRSVREKTGRFLAEGPQAVREVVAHHP
                     EQVIDLYVTPQAATRHTDIVGAADRAGLAVHQVSEEVLAAMGDAQTPQGLAAVCRLAT
                     TTLGEVLATRPRLVVLLTHVRDPGNAGTVIRGADAAGADAVLVSDASVDVFGPKVVRS
                     TAGSLFHLPVVTGLSIEPTIDALRAGGVRLLAADGAGTVLLPDCDLTGAHAWVMGNEA
                     WGLDESIRARCDEVVRVPIYGKAESLNLAMAATVCLYASAQAQRRSSQGV"
     gene            1600..2715
                     /locus_tag="VGN19_10200"
     CDS             1600..2715
                     /locus_tag="VGN19_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196302.1"
                     /translation="MDYTPGLLLDDESAGVAAELIPDGLISAGADGRILFLNTRATRI
                     VGRPRSELIGQDIREVVDLQDSDGRSWWQVTDPWHGLDIRTGHREKLLLLRNGREVLV
                     TAKYLRPGRNRPVNRVNIMLRDALYRRRAELNHAALISTVAHELRSPLTSVKGFSSTL
                     LRRWDRFTDDQKRLMIETIEADADRVTRLITELLDVSRIDSGRLQIRPQPINLPAVYQ
                     AHVARAVASGHDADRFRVDIATPIPEVWADPDRLDQILANLLENALRHGDGVVTLGAA
                     QAIDSTREALVSRGHDGPGVDLLVSDEGSGIDPSQRELIFSRFWHGSSRGSTGLGLYV
                     VKGLVEAHGGQVVVETAPSGGAQFRLSLPSDPPSYLA"
     gene            2808..3914
                     /gene="pheS"
                     /locus_tag="VGN19_10205"
     CDS             2808..3914
                     /gene="pheS"
                     /locus_tag="VGN19_10205"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEV7196303.1"
                     /translation="MSGPNTQYDPVEVAALDPAQIDAAVGQARADIAAATTLEQLKAA
                     RLAHQGDKSPLALANREIGALPPSAKAEAGKRVGQARGLVAQALSARQSELEAERDAR
                     ILVEEAVDLTVRVPRRPLGARHPVSLVSERVEDIFVSMGWEVVEGPEVESEWLNFDAL
                     NIAADHPARQEQDTFFIDPPGSGLVLRTHTSPVQVRTMLERRPPIYVLCPGKVFRTDD
                     LDATHTPVFHQFEGLVVDEGITMAHLKGTLDAFVQRLFGDGIVTRLRPNYFPFTEPSA
                     EIDCRCWICGGSGSVDEAPCRTCGGTGWIEMGGSGMINRRVLRAAGVDTERYSGFAFG
                     LGIERSLMLRHTVSDMHDIVEGDVRFSLQFGMEI"
BASE COUNT          641 a         1397 c         1326 g          571 t
ORIGIN      
        1 catgccgaag atgaagacgc actccggtgc caagaagcgc ttccggatca ccggcacggg
       61 caaggtcatg cgcgagcagg ccaacggccg acacctcctc gagcacaagt cctcgcgcta
      121 cacccgctcc atcgcgggcg acgtcgaggt ctcgaagccg gacaccaaga aggtcaagaa
      181 gctcctcggc cgctgagccg agcccccacc agctcgaccg ggctcaccaa ccagcagcct
      241 gcgcagcatt gagacttaaa ggagaactca cgtggcacgc gtgaagcggg cagtaaacgc
      301 ccagaagaag cgccgggtcg tcctcgagcg cgccagcggt taccgcggac agcgttcgcg
      361 tctgtaccgc aaggcgaaag agcaggtcac ccatagcctc ggttacgcct accgtgaccg
      421 tcgcgcccgg aagggcgact tccgtcgcct gtggatccag cgcatcaacg ctggcgcccg
      481 cgccaacggc atgacctaca accggttcat ccagggcctc aaggccgccg agatcgaggt
      541 cgaccgtcgc atgctggccg agctcgccgt ctcggacgag gccgcgttca ccgccctcgt
      601 cgagatcgcc cgggcgaacg tgccggcgac tgcggacgcc acggcctgag cctgactcag
      661 aacaccactg agcgacacca ctgagcgccg ggacgtgccc gcaccgacct ccccgtcgaa
      721 cgacctgctg acgaacagcc ggtccgaccg ggtcaaggcg gtacgggcgc tgtcccggcg
      781 ctcagtgcgt gagaagacgg gccggttcct ggcggagggc ccgcaggcgg tgcgcgaggt
      841 ggtcgctcac catcccgagc aggtcatcga cctctacgtg acaccgcagg cggcgacccg
      901 gcataccgac atcgtcgggg cagccgaccg cgccggcctg gccgtgcacc aggtgagtga
      961 ggaggtcctc gccgccatgg gtgacgccca gaccccgcag ggcctggcgg cggtatgccg
     1021 cctcgccacc acgaccttgg gggaggtcct cgcgacgcgt ccccgactcg tcgtgctgtt
     1081 gacccacgtc cgcgatcccg gcaacgccgg caccgtgatc cgcggcgcgg acgccgcggg
     1141 tgccgatgcg gtgctggtca gcgacgcctc cgtggatgtc ttcgggccaa aggtcgtgcg
     1201 ctccacagcg gggtcgctgt tccaccttcc cgtggtgacg ggcctgtcga tcgagccgac
     1261 gatcgacgcc ctgcgcgccg ggggagtcag gctcctggcc gccgatggcg ccggaaccgt
     1321 gctcctcccg gactgcgatc tcaccggtgc acatgcgtgg gtgatgggca acgaggcgtg
     1381 gggtctggac gagtccatcc gtgcgcgctg tgacgaggtg gtccgggttc ccatctacgg
     1441 caaggccgag tccctgaacc tggcgatggc cgccacggtc tgtctgtacg cctcagcgca
     1501 ggcccagcgc cgctcctccc agggtgtcta gaaagcccac gatgcataga aacccgtgca
     1561 tcacgaccaa ctccggctcg aaccactaag gtcagcgcca tggactacac cccggggttg
     1621 ctcctggacg atgagtccgc aggagtggcc gccgagctga ttccggacgg gcttatctca
     1681 gccggcgcgg atggccggat cctcttcctc aacacccggg ccacgcgcat cgtgggacgc
     1741 cctcgctcag agctgatcgg ccaggacatc cgcgaggtcg tggacctcca ggacagcgac
     1801 ggtcggtcgt ggtggcaggt gaccgatccc tggcacgggc tggacatccg cacgggccac
     1861 cgcgagaagc tgctgctcct gcgcaacggg cgcgaggtcc tggtcaccgc caagtacctg
     1921 cgtcccggcc ggaaccggcc cgtcaaccgg gtaaacatca tgctgcggga cgccctgtac
     1981 cgcaggcggg cggagctcaa ccatgccgcg ctgatctcga ccgtcgccca cgagctgcgc
     2041 tcgccgctca cctcggtcaa ggggttctcc tcgacgctgc tgcgtcgctg ggaccggttc
     2101 accgacgacc agaagcgcct catgatcgag accatcgagg ccgacgccga ccgcgtcacc
     2161 cggctgatca cagagctgct cgacgtgtcc aggatcgact cgggtcggct ccagatccga
     2221 ccccagccca tcaacctgcc cgccgtgtac caggcgcatg tggctcgcgc cgtcgccagc
     2281 ggccatgacg ctgaccggtt ccgcgtcgac atcgcgaccc ccatccccga ggtgtgggcc
     2341 gaccccgacc gcctcgacca gatcctggcg aacctgctgg agaacgccct gcgccacggt
     2401 gacggcgtcg tgaccctcgg cgcggcgcag gccatcgact cgacccgcga ggcgctggtg
     2461 tcgcgcggtc acgatggtcc cggtgtcgac ctgctcgtca gcgacgaggg aagcggcatc
     2521 gatcccagcc agcgggagct catcttcagc aggttctggc acggctcgtc caggggcagc
     2581 accgggctgg ggctctacgt cgtcaaaggc ctggtcgagg cgcacggcgg gcaggtcgtg
     2641 gtcgagacgg cacccagtgg gggcgcgcag ttccggctga gtctgccctc ggacccgccg
     2701 agctatctgg cctgagaccc tcgggccgtg gcccatagac ttcgtggcgc gccgacaacc
     2761 agagccgctg agaagccagt gccgctgcca agccagagtg gaagatgatg tccggaccca
     2821 atacccagta cgaccctgtc gaggtcgccg ccctggaccc cgcccagatc gacgcggccg
     2881 tcgggcaggc gcgagcggac atcgccgcgg ccacgactct cgagcagctc aaggcggccc
     2941 gactggccca ccagggcgac aagagtccgc tggcgctggc caaccgtgag atcggtgcgc
     3001 tgccaccgag tgccaaggcc gaggcgggca agcgggtggg acaggctcgt ggcctcgtcg
     3061 cgcaggcgct gtcggcgcgc cagagcgagc tcgaggctga gcgggatgcc cggatcctgg
     3121 tcgaggaggc cgtcgacctg acggtccggg tgccccggcg cccgcttggc gctcggcacc
     3181 cggtcagcct ggtcagcgag cgcgtcgagg acatcttcgt ctcgatgggc tgggaggtcg
     3241 tcgagggacc cgaggtcgag tccgagtggc tgaacttcga tgccctcaac atcgccgccg
     3301 accaccctgc ccgtcaggag caggacacgt tcttcatcga tccgcccggg tcgggtttgg
     3361 tgctgcgcac ccacacgtcg cccgtgcagg tgcgcaccat gctcgagcgc cggccgccca
     3421 tctacgtgct ctgcccgggc aaggtgttcc gcaccgacga cctggacgcc acgcataccc
     3481 cggtcttcca ccagttcgag gggctggtgg tcgacgaggg catcaccatg gctcacctca
     3541 aggggaccct cgacgcgttc gtccagcggc tgttcggtga cggcatcgtg acccgcctgc
     3601 ggcccaacta cttccccttc accgagccca gcgccgagat cgactgccgc tgctggatct
     3661 gcggcggctc gggctcggtc gacgaggccc cctgccggac ctgcggcggc accgggtgga
     3721 tcgagatggg gggctccggc atgatcaacc ggcgggtgct gcgcgcggcg ggagtggaca
     3781 ccgagcgcta cagcgggttc gccttcgggc tcggcatcga gcgctcactg atgctgcggc
     3841 acacggtgag cgacatgcac gacatcgtcg agggagacgt gcggttctcc ctgcagttcg
     3901 gaatggagat ctgatgtacg cgcccgtgtc ctggc
//
LOCUS       DASYFY010000506         3802 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_928851, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000506 DASYFY010000000
VERSION     DASYFY010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3802
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_928851"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..538
                     /locus_tag="VGN19_10210"
     CDS             47..538
                     /locus_tag="VGN19_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEV7196304.1"
                     /translation="MSTSNPGTARAGGSEEASTTVVSKSVSDSPSQLQTSKGNTTIAD
                     SVVQKIAGVSAREVSGVYALGGGAARTIGAIRERIPGSSQSVGQGVAVEVGERQAAID
                     LDLVTEYGLSIVDLSRAVRRNVIEAVEGMTGLEVTEVNVLVNDIHLPTDDAQQEGRER
                     RVE"
     gene            552..884
                     /locus_tag="VGN19_10215"
     CDS             552..884
                     /locus_tag="VGN19_10215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196305.1"
                     /translation="MPAQEVLDVDAVAAATLECPAVAGLHPGGTRFVATYLPGRRVVG
                     VRVDEDRVLLSVVLAQGASVGRLEKQVRDAVAPLVAGRAIDVHVADVDTGEELSEELG
                     ADPVGERR"
     gene            1193..1378
                     /locus_tag="VGN19_10220"
     CDS             1193..1378
                     /locus_tag="VGN19_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196306.1"
                     /translation="MNPAIVGLLTGLILGLAWASGGFEGLVITAALGIIGVVVGKVVA
                     GDVDLSQYFGGSNRSSR"
     gene            1375..1839
                     /locus_tag="VGN19_10225"
     CDS             1375..1839
                     /locus_tag="VGN19_10225"
                     /inference="COORDINATES: protein motif:HMM:NF015721.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEV7196307.1"
                     /translation="MNATAIDHHADHADGPLSTPQPAAPESAASRYADPGPREDAGRL
                     EVADQVVEKVAGHAVTLVPGAAAAPRRLLGMNVGQARPRDAASVTAQVEDGIASVQAT
                     IAVRWPKSVPAVADEVRRRIRDDVTSLTGVRVDHIDVEVVSMTLPTAAPRVI"
     gene            1841..2380
                     /locus_tag="VGN19_10230"
     CDS             1841..2380
                     /locus_tag="VGN19_10230"
                     /inference="COORDINATES: protein motif:HMM:NF039399.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6286 domain-containing protein"
                     /protein_id="HEV7196308.1"
                     /translation="MTATRWLTRALAALVALAVLVGSLIVVVEIVVAAAGGGPWLVPY
                     PEWTTWMQQRGWTDRVVRAILLALVAVGLLLLFLAVRRGKPATLPLRGRTPGVDVTAS
                     RRSVERSLVAAASRVSGITGADASVRRRSARIDAQTASHSDPGLQQEVESAVQARLDS
                     LGLTRNLSLRVQVSAKNRR"
     gene            2390..2968
                     /gene="amaP"
                     /locus_tag="VGN19_10235"
     CDS             2390..2968
                     /gene="amaP"
                     /locus_tag="VGN19_10235"
                     /inference="COORDINATES: protein motif:HMM:NF033218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline shock response membrane anchor protein
                     AmaP"
                     /protein_id="HEV7196309.1"
                     /translation="MRRPADTANRIVLFLLGLLLVVAGGLGLALSLGAFGNSRATSPV
                     LPDEVRTFPDDHPWFWWAMAGIALLVALLALLWLVAQLRTHRVSRLDRTTDARDGYTK
                     LHAGALTKAVEDEVGDISGVTRASAQIHDHPRLGLALTVDMTDTADIDRLRAQLENNI
                     VAHVREAVGDPEFPVDIELRPDLRRTPARTVA"
BASE COUNT          573 a         1267 c         1360 g          602 t
ORIGIN      
        1 ccgcctcgtt ttctgtgctt cagccagacg gcctatggga gcgaacatga gtacgagcaa
       61 tccgggcacc gcccgggcag gcggatccga ggaggcgtcc acgacggtgg tgtccaagtc
      121 ggtgtccgat agcccttcac agctgcagac gtcgaagggg aacaccacca tcgccgacag
      181 cgtggttcag aagatcgccg gtgtgtcggc ccgtgaggtc tcgggtgtgt atgcgctggg
      241 cggaggtgcg gcccgcacga tcggggcgat tcgggaacgg atccctggct cgtcgcagtc
      301 ggtcgggcag ggcgtcgcgg tcgaggtcgg agagcgccag gccgccattg acctcgacct
      361 ggtcaccgag tacggcctgt cgatcgtgga tctgagccga gcggtccgcc gcaatgtcat
      421 cgaggcggtc gaggggatga cgggcctgga ggtgacggag gtgaacgtgt tggtgaacga
      481 catccacctg cccaccgacg acgcccaaca agagggacgc gaacgtcggg tcgagtgacc
      541 gggtgcggag catgcctgcc caggaggtcc ttgacgtcga cgcggtggca gcggccacgc
      601 tcgagtgtcc tgccgtggcc gggttgcacc cgggtggtac gaggttcgtg gccacgtacc
      661 tgccgggacg ccgtgttgtc ggtgtgcgcg tcgacgagga ccgggtactg ctgtcggtgg
      721 tgctggcgca gggcgcctcg gttggcaggc tcgagaagca ggtccgcgac gcggtggcgc
      781 cgctggtcgc gggtcgcgcg atcgacgttc acgttgcgga cgtcgacacc ggcgaggagc
      841 tcagcgagga gctcggcgcg gacccggtcg gggagcgaag gtgatccgcg cccaggtgga
      901 cccaacggcg gtggggtccg acgcggagcg ccgccgccgg cgacgggaac tgatgcgtgc
      961 ccatcatccc gatctgggtg gcgatccggc cgtcttcatc gaagttctgg agcggctgaa
     1021 cgaggacggt gtcggtggac gggcacccac ggaggtgcgg ttcgccaaac ggcggcggtg
     1081 gcgtctaccc gacccgcccc gtcggttccg gcgccaacga cccaaacggg tgttttgagc
     1141 gtcccgctcg gaacccgaga acacgacgca ccgcgtctca tgggaggtac agatgaaccc
     1201 tgcgattgtt ggactcctca ccggcttgat cctgggactg gcgtgggcgt cgggtgggtt
     1261 cgagggcctg gtgatcacgg ccgcgctggg catcatcggc gtggtggtcg gcaaggtggt
     1321 cgccggtgac gtcgacctca gccagtactt cggcggctcc aaccgatcgt cgcgatgaac
     1381 gccaccgcca tcgaccacca cgccgaccac gccgatgggc cgctctccac gccgcagccc
     1441 gcggccccgg agtctgcggc ctcgaggtac gccgacccgg gtccccgcga ggacgccggt
     1501 cggctggagg tggccgacca ggtcgtggaa aaggttgccg gtcacgccgt gaccctggtc
     1561 cccggcgcgg ccgcggcgcc caggcgcctg ctgggcatga acgtcggcca ggcgaggccg
     1621 agggatgccg ccagtgtgac cgcgcaggtc gaggacggaa tcgcgagcgt gcaggccacc
     1681 atcgcggtga ggtggccaaa gtcggtgccg gccgtggcgg acgaggtgcg ccggcgcatc
     1741 cgcgacgacg tgacttcact gacgggagtc cgggtcgacc acatcgacgt cgaggtcgtc
     1801 tcgatgaccc tcccgacggc ggcgccgagg gtcatctgac atgactgcga cgcgctggtt
     1861 gacccgtgca ctcgccgcgc tggtggcctt ggctgtcctg gtggggtcac tgatcgttgt
     1921 ggtggagatc gtggtcgccg cggctggcgg tgggccctgg ctggtgccct acccggagtg
     1981 gacaacgtgg atgcagcaga gaggctggac cgatcgggtg gtcagagcga tcctgctcgc
     2041 actggtggct gtggggctgc tactactgtt cctcgccgtg cgccgcggta agccggccac
     2101 ccttccactt cgcgggcgca cgcccggagt ggacgtcacg gcctctcgcc gcagcgtcga
     2161 acggtccctg gtggccgccg cctcccgcgt ctcgggcatc accggagccg acgcctcggt
     2221 acgccgccgg agcgcccgga tcgacgccca gacggccagc cactccgacc ccggcctgca
     2281 gcaggaggtg gagtccgcag tccaggcacg actggactca ctggggctga cccgaaacct
     2341 gagccttcgg gtacaggtct ccgccaagaa cagaagataa ggacaggcga tgagaaggcc
     2401 agcggacacc gcaaaccgga tcgtgctgtt cctgctcggt ctactcctcg tcgttgccgg
     2461 aggacttggg ctcgccctga gcctaggggc cttcgggaac tcacgcgcga cctcgccagt
     2521 cctgcccgac gaggtacgca ccttccctga cgaccatccc tggttctggt gggccatggc
     2581 cggtatcgcg ttgctggtcg cgctcctggc cctgctgtgg ctggtagccc agctccggac
     2641 ccaccgggtc tcccgactcg accggaccac cgacgcgcga gacggctaca cgaaactcca
     2701 tgcgggagcc ctcaccaagg cggtcgaaga cgaggtcggc gacatcagcg gtgtgacccg
     2761 tgcgtccgcc cagatccacg accatccccg cctcggcctg gccctcacgg tcgacatgac
     2821 cgacaccgct gacatcgacc ggttgcgcgc ccaactggag aacaacatcg tggctcatgt
     2881 ccgggaagcc gtcggcgacc ccgagttccc cgtcgacatc gagctccgcc cagatcttcg
     2941 acgcaccccc gcgcggaccg tggcctgaca cccgacctat ccgacggctc acccgcgccg
     3001 aggacagcca cctcgtccga catcgttgtc gccatgcgtg caccttcgac cctgcgtcac
     3061 tagcagccgc gatcggggca acgcgtcgaa cctgaggtct ttcagcgact ccgggtcgtc
     3121 cctggtctgg cagatcgtca ccgtggtcgt cgcgctggtc ctgctggtgc gttgtcggca
     3181 cttgcggcgg tcaacgtcca gggtggtgac gatcgcgagg tcgtccctgc tgaacacggc
     3241 ggtcaaggcg acggtcaacc gggacccgcc ggccgcggcc cagcgggcga accggcttcg
     3301 ggctcgaagc cttggcgggc gacctcgaca gtgctggcga gtgttcattg ccgtccgtcc
     3361 ctcagaagct ggggacggtg ttgtgcatgt cgaagacctg ccgaccacgg tcgcgacgag
     3421 ggcgacgatg gccccgatga tgagcgtgta ctcgaaggtg gtggcccccc gtccgcggtt
     3481 gcccggagtg ggtcgtggcc tgggagtatg tgaggtgttc cctcgcgcgc actgcgtgcg
     3541 agggtcggcc ggcacggtgt ggtcctgcgg gtcaggaacc actaccttct cctctcaccc
     3601 ccgagaggct cctgtcccag ctgggacctt cgcccctgcg tcgcaagggc gcatccggtg
     3661 gggctccgcc gcccgggcgg gaccccacct tcccttggtg tggcggctgg tcagaggccc
     3721 aagccgccga gcagctggtt gaccagccgc gagatcagcg acagcggcgc accgccgtcg
     3781 agcagaccgg tgatggcgag ag
//
LOCUS       DASYFY010000507         1593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_403818, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000507 DASYFY010000000
VERSION     DASYFY010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403818"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..1081
                     /locus_tag="VGN19_10240"
     CDS             32..1081
                     /locus_tag="VGN19_10240"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEV7196310.1"
                     /translation="MPDPRVVANSLARWCASQTDSAMLSEGLFDRLASAIPYEGVFLA
                     SVDPASLLYTRSSRRGMPAEASTAFVAAELGDDDVNQLRTLVSSTTAVGWLDAATHGD
                     RGASSRYRDAMRPFGLGDELRAALLSGGTCWGLLCLHRADGVTGFNESEAELLSHIYP
                     HVADAMRRALLVERATEAVGVEGPGLILLHPDGTARTSTAAGRYWLDKLGEADRTGGA
                     GLPTIVAAVVERLRHGGVVEVARARTLTPSGRWVTVHASALEDPDGTVAVIMEPTSPV
                     ELAPVLLAAYGISPREGDVVRGLLVGQSRKAIAADLHLSLFTVHDHVKAIFDKTGVSS
                     AGQLRMQLFAQQLPT"
BASE COUNT          258 a          547 c          528 g          260 t
ORIGIN      
        1 caggaggccc gcggcgtgtc acgatcaacg catgccggac ccgagggtcg tcgcgaacag
       61 ccttgctcga tggtgcgcgt cgcagaccga ctcggccatg ctcagcgagg ggttgttcga
      121 ccggctcgcc tcggccatcc cctacgaagg cgtcttcctg gcttcggtcg acccagccag
      181 cctcctgtac acgcgctcga gcaggcgagg catgccggcc gaggcgtcca ctgcgttcgt
      241 cgcggccgag ctcggagacg acgacgtgaa ccagctccga accttggtga gttcgacgac
      301 ggcagtcggc tggctcgacg ccgcgacgca cggcgaccgc ggagcttcgt cccggtaccg
      361 ggacgccatg cgaccgttcg ggcttggcga cgagcttcgg gcagcactgc tgagcggcgg
      421 gacctgctgg ggcttgctct gcctccaccg ggccgacggc gttaccgggt tcaacgagtc
      481 cgaagcggag ctcctctccc acatctatcc gcacgtggcg gacgcgatgc gacgagccct
      541 gctcgtggag cgggcgacgg aggctgtcgg cgtggagggc ccaggactga tcctgctcca
      601 ccctgacggc accgcgcgga cctcgaccgc agccgggcgg tactggctcg acaagctggg
      661 cgaggcggac cggacgggcg gtgcaggcct gccaaccata gtcgcagccg tcgtcgagcg
      721 actgcgtcac ggcggcgtgg tcgaggttgc gcgagcacgc acgctcaccc cgtccggtcg
      781 atgggtcacg gtccacgcat cggccctgga ggacccggac ggaaccgtcg cggtgatcat
      841 ggaaccgacc agtccggtcg agctggctcc ggtgctactt gctgcctacg gcatcagccc
      901 acgggagggg gacgttgtcc ggggtctcct ggtcgggcag tcgcgcaagg cgatcgcggc
      961 tgacttgcac ctctcgttgt tcactgtcca cgaccacgtc aaggccatct tcgacaagac
     1021 cggggtctca agcgcggggc agctgcgcat gcaactgttc gctcagcagc tgccgacctg
     1081 agcatcaatg gagttcaaag tcacgttggc gatttgcgaa cagcagtcgt gcccttcggg
     1141 tcattcaggt ctgcgctggt cactggtggc tcctcagtgc ccggcgtgcg gcgcgatgca
     1201 gcggccggtc ggtcagcgcc ctggtgacgc ccctggggat caccgcgttg acgcatctgt
     1261 ggaccgggat ctaccgcaca acccacgccg actttatgcc tcaccctccg ccgggacaag
     1321 gaacatgcgg ccacctgact agatgtagac agggcatcgg cccggctccc gcgacctctg
     1381 ctcagttgcc accctgctag ccgccgtcga cgccctggcc agcgttcgcc atcaaacgcc
     1441 gaaaattgga agcattagcc cgatgagcgt atgagaccgc tggccaagac cacgatcggg
     1501 ctgttccgga ccgcgtgcaa ccgccggagg ccaggttgat cgtcgcgcgg tacactccaa
     1561 tcccctgcgg atatctcccc cgaggctcca caa
//
LOCUS       DASYFY010000508         2654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1192901, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000508 DASYFY010000000
VERSION     DASYFY010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1192901"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VGN19_10245"
     CDS             <1..414
                     /locus_tag="VGN19_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7196311.1"
                     /translation="LDKKGMEKRAGQSVQDLGIQTIQNMGQAVETLSGGQRQAVAVAR
                     AAAFGSKVVILDEPTAALGVKESGMVLNMVKQLRDKGLSIILISHNMPHVWEVADRIH
                     IQRLGGRAGVVTPQTHDMGEGVAIMTGAKRLEPSP"
     gene            411..815
                     /locus_tag="VGN19_10250"
     CDS             411..815
                     /locus_tag="VGN19_10250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003803184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196312.1"
                     /translation="MTDAIVVGYIPSPEGIAAFERAKQEARLRNARLIVVNTGRHGNY
                     ANPMFASPEDIDAIDAELSAADIGHEVLQPTGGLAAAEEILRTAGEQNAGLIVIGLRH
                     RSPVGKLLLGSTAQQVLLDAPCPVLAVKAKVP"
     gene            1171..>2654
                     /locus_tag="VGN19_10255"
     CDS             1171..>2654
                     /locus_tag="VGN19_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 domain-containing protein"
                     /protein_id="HEV7196313.1"
                     /translation="MPEYVGQSTKNVRLTAFTRLGGCGDGDVTMGSDVAASDAARGGH
                     TVLAGAESESFASLRRRATSRAERFAMGKALRQQVPRKSLARWEAGPGRPDPVALVRV
                     SHEGRLPDLVAIRVGRMVGSPYGFLRGTAIVMAEDVASLPSTGITPVVCGDAHLGNFG
                     FYASPEGELVMDLNDFDEAHPGAWEWDLRRLVASIWVAGRENSATEEQCATAVMSCVS
                     AYRDAVAFLANQPLLMRSYNRLDVERLHERATEKTLRAEIKRSAKRARQRTSDRALPR
                     FSREHEGRRRIVDEPPLITHLPEAESDLVAHGLDDYLATLAPHWRRVLGGYTLVDVAQ
                     KVVGVGSVGLRAYVALLEGSSPKDVLFLQLKQARRSVLARYVHGDSAWHDHQGQRVVE
                     YQQALQTVSDPLLGWTSAGELQFYVRQFRNMKGTVPLDAIDPPALADYAGIVGRLLAK
                     GHARTSGASMIAGYAGRSDTLDRALTRFARAYADQTEADHALLVA"
BASE COUNT          408 a          912 c          938 g          396 t
ORIGIN      
        1 ctggacaaga agggcatgga gaagcgggcc ggtcagtcgg ttcaggacct cggcatccag
       61 accatccaga acatggggca ggcagtcgag accctctccg gtggccagcg ccaggccgtc
      121 gccgtggccc gcgcagcggc attcggcagc aaggtcgtca tcctcgacga gcccaccgcc
      181 gccctcggcg tcaaggagtc cggcatggtc ctgaacatgg tcaagcagct gcgcgacaag
      241 ggcctgtcga tcatcctcat cagccacaac atgccccacg tgtgggaggt ggccgaccgg
      301 atccacatcc agcggctcgg cggccgcgcc ggagtggtca ccccccagac ccacgacatg
      361 ggcgaagggg tggccatcat gaccggggcc aagcgcctgg agccgtcacc gtgacggacg
      421 ccatcgtggt gggctacatc ccgagccccg agggaatcgc ggcgttcgag cgggccaagc
      481 aggaggcgcg gctgcgcaac gcccgcctca tcgtcgtcaa caccggtcgg cacggcaact
      541 acgcgaaccc catgttcgcc agccccgagg acatcgacgc catcgacgcc gagctcagcg
      601 ccgcggacat cggccacgag gtgctccagc cgaccggcgg ccttgctgca gccgaggaga
      661 tccttcggac cgccggagaa cagaacgcgg ggctgatcgt catcggtctt cggcaccgca
      721 gccccgtcgg caagctcctc ctggggagca ccgcgcagca ggtgctactc gatgcgccgt
      781 gcccggtact cgccgtcaag gcgaaggtgc cctgagactc ggcctcggct ccgggttcga
      841 gcggagccag gccgagcacc accacaagtc ctggcacgct gacacggctc tgctcgggct
      901 gcacggcata gtccttccgg cgccgtgccc cgccggtcga ggttggcgac ataacccggt
      961 tgcgggaccg cggccacttc gccttctgga gcgccggtcc gacgtcgtca gacggggacg
     1021 ggtctcttgc cggtgtcgtg cttatcgatc ccgcagaccg ccttggcgcc ggcgatgagg
     1081 tctcgcagtg aggtgtcgtc gatgctgctc ctcgctggcg cgtgctgtgt gcacccaacg
     1141 aagcacttct gatggggatg cacgcctgtg gtgcctgagt atgttggtca gagcacgaag
     1201 aacgtccggc tgaccgcgtt cacgaggctc ggcgggtgcg gggacgggga cgtcacgatg
     1261 ggaagtgatg tggctgcctc cgacgctgcg cggggcgggc acaccgttct ggctggcgcg
     1321 gagagcgagt ccttcgcctc cctgcggcgg cgagccacgt ctcgggcgga acggttcgcc
     1381 atgggcaagg cgctgcgtca gcaggtgccg cgcaagtcgt tggcgcgctg ggaagccggc
     1441 ccgggccgcc cggatccggt tgcactggtt cgggtctcgc atgagggtcg gctgcccgac
     1501 ctggtcgcga tccgggtcgg gcggatggtg ggctcgccgt atgggttctt gcgcggcacg
     1561 gcgatcgtca tggccgagga cgtggcgtcg ctgccgtcga ccggcatcac gccggtggtc
     1621 tgcggcgatg cgcacttggg caacttcggc ttctatgcct cccctgaggg cgagctggtg
     1681 atggacctca atgacttcga cgaggcgcac cccggcgcgt gggagtggga cctgcgtcgg
     1741 ctcgtcgcga gcatctgggt cgccggccgg gagaattccg ccaccgagga gcagtgcgcc
     1801 acggcggtga tgtcgtgtgt ctcggcgtac cgggatgcgg tggcgttcct ggccaaccag
     1861 ccgctgctga tgcggtcgta caaccgactg gacgtggagc ggttgcatga gagggccacc
     1921 gagaagacgc tgcgcgccga gatcaagcgg tccgccaagc gggcccggca gcgcaccagc
     1981 gaccgcgcgc tgccacggtt cagccgtgag catgaaggcc gacggcggat cgtcgacgag
     2041 ccgccgctga tcacccatct gcccgaggcc gagtccgacc tcgtcgcaca cggcctcgac
     2101 gactacctgg cgacgctggc cccgcattgg cgacgggtgc tcggcggtta caccctggtc
     2161 gacgtcgcgc agaaggtcgt cggcgtcggg agcgtgggcc tgcgcgccta cgtagcgctg
     2221 ctcgagggaa gcagccccaa ggacgtgctc ttcctccagc tcaagcaggc ccggcggtcg
     2281 gtgctcgcgc ggtacgtcca cggcgactcc gcctggcacg accaccaagg gcaacgggtc
     2341 gtggagtacc agcaggcgct gcagacggtc agcgacccgc tgctgggctg gaccagcgcg
     2401 ggcgagctgc agttctacgt gcgccagttc cggaacatga agggcaccgt cccgctggac
     2461 gccatcgacc cgccggccct tgccgactac gccggcatcg tcgggcgcct gctcgccaag
     2521 ggccacgcgc gaaccagcgg tgcctcgatg atcgccgggt atgccggtcg ctccgacacc
     2581 ctcgaccgcg ccctgacccg gttcgcgcgg gcctacgccg accagaccga ggccgaccac
     2641 gccctccttg tcgc
//
LOCUS       DASYFY010000509         2138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1560650, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000509 DASYFY010000000
VERSION     DASYFY010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1560650"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1549
                     /locus_tag="VGN19_10260"
     CDS             <1..1549
                     /locus_tag="VGN19_10260"
                     /inference="COORDINATES: protein motif:HMM:NF016432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEV7196314.1"
                     /translation="AWRRTRRESLSPFPDLAVEPVSHQGGRDSGQRDDQELVLAALTA
                     KQRAVLVLRYFEDRSEVDTAELLGVSTATVQSQSQSQSQSQSQSQSQSQSQTSPEPDL
                     GALLERASQHLPELDFAQDAWAGALAALRHRRRVWLGSLGAVAVAALAVAAVQLGGST
                     THTPTPAPTSTTTPVVRTFADGAAYALMPLEGQEAQLRHFDAGIPSVLDIRTTTTRMS
                     ALTQPLTSVVAVYLSEAGAGRFHPVLVTSRGQRVVVDRLTLLPTQDASANPGQVLGPR
                     AVGGGGRYVVFAQPGQVVRLDTRTGAVTDYLVPSQTLSSAGWNPTGSLVIARDERSAW
                     TIDPWMPGAKAVAATGSYEGTFRLSAASDSVGVTRFGTNGKVAAMNTVQAPVTGTWGE
                     TINSDTWAAAGAFFDQNVTHPVIRLGNGPIYQGLVAVDMEARTARLLLAPESPDGQTG
                     RFNGCCTVLGWADGQTLLYESVGSHGRWVLAWNLTSGEVFEVSQIFAPADAQPVVPMA
                     LNVGWRY"
     gene            1650..>2138
                     /locus_tag="VGN19_10265"
     CDS             1650..>2138
                     /locus_tag="VGN19_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018173681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7196315.1"
                     /translation="MTQTQTVARGPASAVMAIELAGLTKSFGSVHAVRGIDLTVRPGE
                     IVAFLGPNGAGKTTTIDMMLGLSRPDGGTARVYGMEPQSAVRHGLVSAVMQTGGLLRD
                     LTVGETLRLTASLFSNTRPVGEVLERAGISDIANRRVVKCSGGQQQRLRFAMALLPDP
                     ELL"
BASE COUNT          324 a          752 c          735 g          327 t
ORIGIN      
        1 ggcctggcgc cggaccagac gtgagtcgct ctcgcctttt ccggacctag cggtcgagcc
       61 cgtctcccac caaggcggtc gcgactcggg ccagcgcgac gaccaggagc tggtcctcgc
      121 tgccctgact gccaagcagc gggctgttct ggtgctgcgg tacttcgagg atcgcagcga
      181 ggtcgacaca gccgagctgc tcggcgtctc gacggcgacc gtccagagcc agagccagag
      241 ccagagccag agccagagcc agagccagag ccagagccag agtcagacgt cgcccgagcc
      301 tgatctcgga gccctgctcg agcgggccag ccaacacctg ccggagctgg acttcgccca
      361 ggatgcctgg gcaggcgcgc tcgccgcgct gcgccaccga cgcagggtgt ggctcggttc
      421 gctgggtgcc gtggcggtgg cagcgctcgc ggtggccgcg gtccagctgg gtggctccac
      481 gacccacacg ccgaccccgg ccccgacctc cacgacgacg ccggtggtgc ggaccttcgc
      541 ggacggcgcg gcatacgcct tgatgcccct ggaaggacag gaggcgcagc tgcggcactt
      601 cgacgccgga atcccgtcgg tcctcgatat ccggaccacg accaccagga tgtcggccct
      661 cacccaaccg ctgacgtcgg tcgtcgccgt gtacctctcc gaggcgggcg cggggcgctt
      721 ccaccccgtt ctggtcacca gccgtggaca gcgcgtggtg gtcgacaggc tcaccctgct
      781 gcccacccag gatgcgtcag ccaaccccgg acaggtgctc ggcccccgag ccgtcggcgg
      841 gggagggcgg tacgtcgtct tcgcccagcc cgggcaggtc gtccgcctgg acacccgcac
      901 cggggcggtg accgactacc tggtgccctc gcagaccctc agctcggccg gctggaaccc
      961 gaccgggagc ctggtgatcg cccgcgacga gcgctccgcc tggaccatcg acccgtggat
     1021 gcccggggcg aaggccgttg cggcgactgg tagctacgag ggcaccttcc ggctcagcgc
     1081 ggcctccgac tcggtggggg tcacccggtt cgggacgaac ggcaaggttg cggcgatgaa
     1141 caccgtccag gctccggtca ccggcacctg gggcgagacg atcaacagtg acacctgggc
     1201 ggcagcgggc gccttcttcg accagaacgt gacgcatccg gtcatccgcc ttggcaacgg
     1261 gcccatctac caggggctgg ttgcagtgga catggaggcc cggacggcac ggctgctctt
     1321 ggcgcccgag tcacccgacg ggcagacggg tcgtttcaac ggctgctgca ccgtgctggg
     1381 ctgggccgac ggccagacgc tgctgtacga gtccgtgggt agccacggcc gatgggttct
     1441 ggcctggaac ctcacttcgg gcgaggtctt cgaggtatcc cagatctttg ccccggccga
     1501 tgcgcaaccc gtcgtgccga tggcgctcaa tgtcggctgg cgctactagg tcgacctggc
     1561 agctaccagg tcgtgccctg acaaacgtca gtggtcgttc gtgacacctg tgtgatctcc
     1621 ggcgggccga ccggtgacac tctgatccca tgacacagac gcagacagtt gcccggggac
     1681 ccgctagcgc ggtgatggcg atcgagctgg ccgggctgac caagagcttc ggcagcgtcc
     1741 atgccgtccg ggggatcgac ctgacggttc gccctggcga gatcgtcgcc ttcctcgggc
     1801 ccaacggcgc gggcaagacc accacgatcg acatgatgct cgggctgtct cgccctgatg
     1861 gcggcaccgc ccgcgtatat ggcatggagc cacagtccgc cgtccggcac ggcctggtct
     1921 ccgcggtcat gcagaccggt ggcctgctac gcgacctgac ggtcggggag accctgcggt
     1981 tgaccgcgag cctgttcagc aacacccgtc ccgtcggcga agtcctcgag cgcgcaggca
     2041 tcagtgacat cgcaaaccgt cgggtggtca agtgctcggg tgggcagcag cagcggcttc
     2101 ggttcgccat ggcgttgctg cccgaccctg agctcctc
//
LOCUS       DASYFY010000510         7288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_299217, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000510 DASYFY010000000
VERSION     DASYFY010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7288
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299217"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..619)
                     /gene="hisB"
                     /locus_tag="VGN19_10270"
     CDS             complement(5..619)
                     /gene="hisB"
                     /locus_tag="VGN19_10270"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEV7196316.1"
                     /translation="MTATDRTVSLNRSTSESSVQLELNLDGTGESDIDTGIRFYDHML
                     ASLAKHSLIDLRVKATGDLDVDAHHTVEDVAIVLGDAFREALGDKSGIARFGDATVPL
                     DEALVQAVVDVAGRPYVVHTGEPEGQAFVVIGGTYAGSLTRHVWESFAGRAGIALHVR
                     VLSGRDPHHIVEAQFNAVARALRAAVARDDRVQGVPSAKGSLST"
     gene            complement(616..1746)
                     /locus_tag="VGN19_10275"
     CDS             complement(616..1746)
                     /locus_tag="VGN19_10275"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEV7196317.1"
                     /translation="MTGIERLLREDLRGATPYGAPQLDVPVRLNTNENSYPLPAQVVE
                     EITRAVAAVASDLNRYPDREFTDLRGALAAYLTETGADHGVTVAPEQVWAGNGSNEVL
                     QHLVLAFGGPQRTALGFTPAYSMHPIISSSVGTGWVDGLRGQGGTPFDLTVESAVAQV
                     QTHQPHLVFLCSPNNPTGTALGLDVVEAVYAAAQRAVVVVDEAYAEFARPGTPSALTL
                     LEGRPRLVVTRTMSKAFAFAGGRLGYLAADPALVDALRLVRLPYHLSAPTQAIAVAAL
                     RHADALLGTVEVIKGQRDRIVHRLAELGLEPVASDANFVLFGGLTDAAQTWRELLDRG
                     VLVRDVGIPHYLRVTAGTPAETDAFLDAMAEVAPQTMDRSAR"
     gene            complement(1743..3188)
                     /gene="hisD"
                     /locus_tag="VGN19_10280"
     CDS             complement(1743..3188)
                     /gene="hisD"
                     /locus_tag="VGN19_10280"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEV7196318.1"
                     /translation="MMSTIDLRGRALGARELRSLLPRAEFDVAAAVETVRPICEDVRQ
                     RGAAALYELGERFDGVRPTSLRVPAAVLAAALTGLDPEVRAALEESVRRARLVHEEQR
                     RQDTTTTVVPGGTVTERWIPVDRVGLYVPGGRAVYPSSVVMNVVPAQIAGVGSLAVAS
                     PPQRENTGVFAGYPHPTVLAACALLGVEEVYAVGGAQAIAAFAFGFEDTGADDTGAGG
                     TGADNTRADGTGADNTIAAETSAEGAVVCDPVSLVTGPGNIYVAAAKRYLKGIIGIDA
                     EAGPTEIAILADDTAVVAHVSADLVSQAEHDPQAASVLVTTSPELAAAVAADLEGRVT
                     STKHSGRVREALSGRQSGVVLVDDLDAGLAVVNAYAAEHLEIQTRDAAAVAARVRNAG
                     AVFVGPHAPVSLGDYVAGSNHVLPTGGCACHSSGLSVQSFLRGVHVVDYTEAALREVA
                     HHVVTLAQAEDLPAHGEAVQARFDGVPRAWT"
     gene            complement(3261..6383)
                     /locus_tag="VGN19_10285"
     CDS             complement(3261..6383)
                     /locus_tag="VGN19_10285"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamine synthetase]
                     adenylyltransferase/[glutamine
                     synthetase]-adenylyl-L-tyrosine phosphorylase"
                     /protein_id="HEV7196319.1"
                     /translation="MSSGRPTSQSATLARRGFADPGRAAQLLSDRALAGLVDPFDDVF
                     SDGLPDALAAVADPDLALLSLVRLMDALRRSEPSRRDAESGPGREVSGLIAALRHPGP
                     ARDRLLAVLGASSALGDHLVTHPEHWRSVADAAPMLPEQRVHDLVEAVTAPCQAVRDL
                     GEAARAPGEHAGYDALRIGYRRQLLGISALDLTAQDPMEALPAAARGLADLAEAALEA
                     ALVIARAEVGVEAELCDFAVIGMGKTGGRELNYVSDVDVIFVAEPRVGVDEATAITAA
                     TALATHLMRACATSTGQGTLWPVDAALRPEGKNGPLVRTIDSHRLYYERWAKTWEFQA
                     LLKARPVAGDRALAQAYLDAVQPMVWQAASREHFVEDVQAMRRRVEQHVPPAEADRQL
                     KLGPGGLRDVEFSVQLLQLVHGRSDDTLRSGTTLEALQALANGGYVGREDAATLDAAY
                     RLLRTLEHRIQLFRLRRTHLMPTAEPDLRRLGRALGHRSDPAKAVVTQWQAQAREVRR
                     IHERLFYRPLLAAVARLSSTDARLAPDAAKDRLAALGFRDPAGAIRHLEALTSGVSRR
                     AAIQRTLLPVMLGWFADEADPDGGLLAFRKVSEELGSTHWYLRLLRDEGTAAERLAHT
                     LSRSRYAADLLMGAPDAVAMLGDVGGLAPRSRPDLFRRMAAAASRQDEPDRAVRAARG
                     IRRQELFRVAVADLSGELDLHGVGMALTDLTAALIDAALGVAVRTVEERRSAPLVTRL
                     LVVGMGRLGGRELGYGSDADVIFVHDPFDGADEGEAQDQALAVVQELRRLLGSAGPDP
                     QLGLDADLRPEGKNGPLVRSLASYRAYYERWSLTWESQALLRATPMAGDEDLGRRFVE
                     LIDPLRWPPEGLSVRQVREIRTLKARMEAERLPRGADPKSHFKLGRGGLSDVEWTVQL
                     LQMRHAHAQPSLRTTETLAALNGAVEAGFLPLEQAEALRDSWVLASELRNAAMLFRGR
                     PADGVPSDLRIADGMSRILGGEPGSGADLAERYFRVARRARAVTESVFYGSAHGSAHG
                     SAHGSGHGSG"
     gene            complement(6462..>7288)
                     /locus_tag="VGN19_10290"
     CDS             complement(6462..>7288)
                     /locus_tag="VGN19_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HEV7196320.1"
                     /translation="TMLESMGISVEFSHHEGGPGQNEIDLRYADALSTADNIMTFRTV
                     IKEVALEQGIFASFMPKPFAQHPGSGMHTHMSLFDGDSNAFYEAGAPYQLSKVGRQFI
                     AGLLRHGAEITAVTNQWVNSYKRLWGGGEAPAHLTWGHNNRSAMVRVPMYKPTKGQSS
                     RAEVRTLDAACNPYLAFAVMLAAGLKGIEEDYALPPETEDDVWGLTSSERQAMGIEPL
                     PTTLYEAIRVMERSELVADTLGEHVFDFFLRNKRAEWEDYRGEITRFELERYLPGL"
BASE COUNT         1103 a         2597 c         2546 g         1042 t
ORIGIN      
        1 atgctcacgt ggagaggctg cccttcgcgc tcgggacccc ctggacccga tcgtcgcgtg
       61 ccacggcggc gcgaagtgca cgagcgaccg cattgaactg cgcctccacg atgtggtgtg
      121 ggtcgcggcc ggacagcacg cgcacgtgca aggcgatccc ggcgcggccc gcgaaggact
      181 cccacacgtg cctggtcaac gacccggcat acgtcccgcc gatcacgacg aaggcttggc
      241 cctccggctc cccggtgtgg acgacatacg gccgcccggc cacgtcgacc acagcctgga
      301 ccaacgcctc gtcgagcggg acggtggcgt caccgaaccg cgcgatgccg ctcttgtcac
      361 caagcgcctc acggaacgcg tctccaagga cgatcgcgac atcctcgacc gtgtggtgag
      421 cgtccacgtc caggtcacca gtggccttga cccgcaggtc gatcagcgag tgcttggcca
      481 gggacgcgag catgtggtca tagaaccgga tcccggtgtc gatgtccgac tcgccggtgc
      541 cgtcgaggtt gagctccagc tggacgctgg actccgacgt cgaccggttg agagagaccg
      601 tgcggtctgt cgcagtcacc tggcgctcct gtccattgtt tgcggcgcaa cctcggccat
      661 ggcgtcgagg aacgcgtccg tctcggccgg ggtgccagcc gtgacacgaa gatagtgggg
      721 gatgccgaca tcgcggacca ggacgccacg gtccagcagc tcgcgccagg tctgcgcagc
      781 gtcggtcaaa ccgccgaaaa gcacgaagtt cgcgtcgctg gccaccggtt cgaggccgag
      841 ctcggcgagc ctgtggacga tccggtcacg ctgccccttg atgacctcga ccgtgccgag
      901 cagcgcgtcg gcgtgcctca gcgcggccac ggcgatggcc tgggtcggcg ccgacaggtg
      961 gtagggcagc cgcaccagcc gcagggcgtc caccaaagcg ggatcggccg cgaggtaccc
     1021 gagccgtcca ccggcgaacg cgaaggcctt gctcatcgtg cgggtgacca cgagtctcgg
     1081 acggccttcg agcaaggtca gggcactagg cgttccgggg cgcgcgaact cggcgtacgc
     1141 ctcgtcgacg acgacgacgg cccgctgcgc cgcggcatac accgcctcca cgacatccag
     1201 tcccagcgcc gtccccgtgg ggttgttggg cgagcacaag aacaccagat gcggctggtg
     1261 ggtctgcacc tgcgccacgg ccgactcgac ggtgagatcg aacggcgtcc caccctgacc
     1321 acgcaggccg tcgacccaac cggtgccgac ggagctgctg atgatcggat gcatcgagta
     1381 cgccggggtg aaccccagcg ccgtgcgctg cgggccgccg aaggccagca cgagatgctg
     1441 cagcacctcg ttggaaccgt tcccggccca gacctgctcg ggagccaccg tcacgccgtg
     1501 gtccgccccc gtctcggtga ggtatgccgc gagcgccccg cgcaggtcgg tgaactcccg
     1561 atccggatac cggttgaggt ccgacgcgac cgcggcgacg gcgcgggtga tctcctccac
     1621 cacctgggcg ggcagggggt aggagttctc gttggtgttc aggcgcaccg ggacgtcgag
     1681 ctgcggcgcg ccgtagggag tcgcgccgcg cagatcctcg cgcagcaacc tctcgatccc
     1741 ggtcatgtcc aggctcgcgg cacgccgtcg aagcgcgcct ggaccgcctc gccgtgcgcg
     1801 ggcaggtcct cggcctgcgc gagcgtgacc acatgatgcg cgacctcccg cagggcagcc
     1861 tcggtgtagt cgacgacgtg cacgccgcgt aggaacgact gcacggacag accgctgctg
     1921 tgacaggcgc acccgcccgt gggcagcacg tggttggagc ccgcgacgta gtcgccgagg
     1981 ctcacgggcg cgtgcggccc aacgaagacc gcaccggcgt tgcggacccg tgccgcgacg
     2041 gccgcagcat ctcgggtctg gatctccagg tgctctgcgg cgtacgcgtt gacgacagcc
     2101 agacccgcgt cgaggtcgtc gacgaggacg accccggact ggcggcccga gagcgcctcg
     2161 cggacacggc cggagtgctt ggtcgacgtg acgcgcccct cgagatcggc ggcaacggcc
     2221 gcggcgagct ctggcgaggt cgtcaccagg acggaggcgg cttgcgggtc gtgctcggcc
     2281 tgggacacca ggtcggcgga gacgtgggcg accacggcgg tgtcgtcggc gaggatggcg
     2341 atctcggtcg gacccgcctc ggcgtcgatc ccgatgatgc ccttgaggta gcgcttcgcc
     2401 gcagccacgt agatgttgcc cggaccggtc accaggctga ccgggtcgca cacgacggcg
     2461 ccctccgcac tggtctcggc tgcaatcgtg ttgtctgcgc cggtgccgtc tgcgcgggtg
     2521 ttgtctgccc cggtgccacc tgcgccggtg tcgtccgcgc cggtgtcctc gaagccgaag
     2581 gcgaaagcag cgatggcttg ggcgccgccc acggcataca cctcctccac ccccagcagg
     2641 gcacaggcgg cgagcacggt cgggtgggga tagccggcga acacaccggt gttctcccgt
     2701 tggggcggac tggccacagc gagcgagccc acacccgcga tctgcgcggg gacgacgttc
     2761 atcacgacac tcgaggggta caccgcccgc ccgcccggga cgtacaggcc gacccggtcg
     2821 acggggatcc agcgctcggt gacagtaccg ccagggacca cggtggtggt cgtgtcctga
     2881 cgccgctgct cctcgtgcac cagccgcgcc cgacggaccg actcctccag ggcagcacga
     2941 acctccgggt ccaagcccgt cagcgccgcg gccagaacgg cagcgggaac gcgcaacgag
     3001 gtcgggcgga caccgtcgaa gcgctcgccc agctcgtaca gggcggcggc cccgcgctgc
     3061 cggacgtctt cacagatggg ccgcacggtc tccacggcgg cggccacgtc gaactcggcc
     3121 cgcggcagca ggctgcgcag ctcgcgggct cccagcgcac gtccgcgcag gtcgatcgtc
     3181 gacatcatgg cgccaagtct aggtcgcccg gtgcgcccga ctccgcccgg tctcaggtcc
     3241 cgggaccccg ggtttgaggg tcagccggac ccatggccgg acccgtgggc cgatccgtgg
     3301 gccgacccgt gggccgaccc gtagaagacg gactccgtca cggcacgcgc ccggcgggcg
     3361 accctgaagt accgctcggc caggtcggct ccgctaccgg gctcgccacc caggatccgg
     3421 ctcattccgt cggcgatccg caggtcggac ggcacgccgt cagcgggccg cccccggaac
     3481 agcatcgcgg cgtttcgtag ctccgaggcc aacacccacg agtcgcgcag ggcctcggcc
     3541 tgttcgagcg ggaggaaccc cgcctcgacg gccccattca gggcagccag ggtctccgtc
     3601 gtccggaggg acggctgggc gtgagcatgt ctcatctgaa gcagctgcac ggtccactcg
     3661 acgtccgaca ggccgccccg tccgagcttg aagtggctct tggggtcggc tccccggggc
     3721 aggcgctcgg cctccatgcg ggccttcagg gtgcggatct cgcgcacctg tctgaccgac
     3781 agcccttccg ggggccagcg cagcgggtcg atcagctcga cgaaccgccg cccgaggtcc
     3841 tcgtcgccgg ccatgggggt ggcgcggagc agcgcttggg actcccaggt cagcgaccac
     3901 cgctcgtagt aggcgcgata gctcgccagg ctgcggacca gcggaccgtt cttgccctcg
     3961 ggacgcaggt cggcgtccaa gcccagctgc gggtccggac ctgcggagcc caacagtcgg
     4021 cgaagctcct ggacgaccgc gagcgcctgg tcctgggcct ccccttcgtc cgccccgtcg
     4081 aacggatcgt gcacgaagat cacgtcggca tcgctgccat agccgagctc ccggccgccc
     4141 agccgaccca taccgaccac tagaagccgg gtcaccaacg gtgcggaccg ccgctcctcg
     4201 accgtccgaa ccgccacgcc cagggcagcg tcgatgaggg ccgcagtgag gtcggtcagg
     4261 gccattccca cgccatggag gtcgagctcc ccgctcaggt ccgccaccgc cacccggaac
     4321 agctcctggc ggcggatgcc acgcgcggcc cgcacggcac ggtcgggctc gtcctgtcga
     4381 gaggccgccg cagccatccg gcggaacagg tccggcctgg agcgcggcgc caggccgccg
     4441 acgtcgccga gcatcgccac cgcgtccggg gcacccatga gcaggtctgc ggcataccgg
     4501 ctgcggctca aggtgtgcgc gagccgctcg gccgcggtgc cctcgtcgcg cagcagtcgc
     4561 aggtaccagt gcgtcgaccc gagctcctcg ctgaccttgc ggaacgccaa caagccacca
     4621 tcgggatcgg cctcgtcggc gaaccagccg agcatcaccg gcagcagggt tcgctggatc
     4681 gcggcccggc ggctcacccc ggacgtcaac gcctccaggt gtcggatcgc gcccgcgggg
     4741 tcgcggaagc cgagggcggc gaggcgatcc ttggccgcgt cgggggccag ccgggcgtcc
     4801 gtggaactga gcctggcgac ggctgccagc agcggtcggt agaacagtcg ctcgtggatg
     4861 cgccggacct cgcgtgcctg ggcctgccac tgggtcacga cggccttggc aggatcggag
     4921 cggtgaccca gggcccggcc gagccgtcga aggtcaggct ctgccgtggg catgagatgc
     4981 gtgcgacgca gccgaaacag ctggatccgg tgctcgagtg ttcgcaacag tcggtatgcc
     5041 gcgtcgaggg tcgctgcgtc ctcgcggccg acataccccc cgttcgcgag cgcctgcaaa
     5101 gcctcgagcg tcgttccgga gcggagcgtg tcgtccgacc gcccgtgcac gagctgcagc
     5161 agctggacgc tgaactccac atcccgcagg ccccccggac cgagcttgag ctggcggtca
     5221 gcctcagccg gcggaacgtg ctgttccacc cggcgacgca tggcctggac gtcctcgacg
     5281 aagtgttcac gtgaggcggc ctgccagacc atcggttgga cggcatcgag gtacgcctgc
     5341 gccagggcgc ggtcaccggc caccggcctg gccttgagca gggcctggaa ctcccaggtc
     5401 ttggcccagc gctcgtagta caggcgatgg ctgtcgatcg tccggacgag cgggccgttc
     5461 ttcccctcgg gacgcagggc tgcgtccacc ggccacagcg tgccctggcc ggtggaggtg
     5521 gcgcacgctc gcatcaggtg ggtcgccagg gcagtcgctg ccgtgatggc ggtggcctcg
     5581 tcgacgccca cccgaggttc ggccacgaag atcacgtcga cgtcgctgac atagttcagc
     5641 tcgcggcctc cggtcttgcc catcccgatc acggcgaagt cgcagagctc ggcctcgacg
     5701 ccgacctctg cgcgggcaat caccaaggcg gcttcgagcg cggcctccgc gaggtcagcc
     5761 agcccccggg ccgctgccgg cagggcttcc atagggtcct gagcagtcag gtcgagtgcc
     5821 gagattccga gcagctgccg ccggtatccg atgcgcaggg cgtcgtaccc ggcatgttcg
     5881 ccgggagcac gcgcagcctc cccgaggtca cgcacagcct gacacggggc agtcactgcc
     5941 tcgaccaagt cgtgcacccg ctgctcgggc agcatgggtg cagcgtccgc cacgctccgc
     6001 cagtgctcgg gatgggtcac caggtggtcg ccgagtgcgc tcgacgcgcc gaggacggcc
     6061 agcagccggt cacgggccgg gcccgggtgc cgcaacgccg cgatcagacc ggagacctcg
     6121 cgccccgggc cgctctcggc atcgcggcgt gacggctcgc ttcggcgcaa agcgtccatc
     6181 agccggacca ggctcagcag cgccagatct gggtcagcca ccgcggcaag ggcgtcgggg
     6241 agcccgtcgc tgaagacgtc gtcgaacggg tcgaccaggc cggccaaggc gcggtcgctg
     6301 aggagctgcg ccgcgcggcc ggggtcggcg aacccacgac gcgcaagggt cgctgactgc
     6361 gaggtgggac ggccggaact cacccggcca ccctacgcag gctgatccgg caccgtttca
     6421 ggtgtggtca gctgtcttcc ggcgtggtga gtggtcggct gtcacagacc cggcaggtac
     6481 cgctcgagct cgaagcgggt gatctcgccg cggtagtcct cccactctgc gcgcttgttc
     6541 cgcaggaaga agtcgaagac gtgctcgccc agggtgtccg ccaccagctc gctgcgctcc
     6601 atcaccctga tggcctcgta cagagtcgtg ggcagcggct cgatgcccat tgcctggcgc
     6661 tccgatgagg tcagtcccca cacgtcgtcc tcggtctcgg ggggcagagc gtaatcctcc
     6721 tcgatgccct tgagtccggc cgcgagcatc accgcgaagg ccagatacgg gttgcacgcg
     6781 gcatccaggg tgcgcacctc ggcacggctg ctctgaccct tggtgggctt gtacatcggg
     6841 accctgacca tcgccgaacg gttgttgtga ccccaggtga ggtgggccgg cgcctctccc
     6901 ccgccccaca accgcttgta ggagttcacc cactggttgg tgaccgcggt gatctcggcc
     6961 ccgtggcgca acaggcctgc gatgaactgc cgcccgacct tgctcaactg gtacggagca
     7021 cctgcctcgt agaaggcatt gctgtcgccg tcgaacagcg acatgtgggt gtgcatcccc
     7081 gagccggggt gctgggcgaa cggcttcggc atgaaggagg cgaagatgcc ctgctcgagg
     7141 gccacctcct tgatgaccgt gcggaaggtc atgatgttgt cggccgtgga gagggcgtcg
     7201 gcgtagcgca ggtcgatctc gttctgaccc ggcccgccct cgtgatggct gaactcgacc
     7261 gagatgccca tggactcgag catggtga
//
LOCUS       DASYFY010000511        12392 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1455514, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000511 DASYFY010000000
VERSION     DASYFY010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 12392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12392
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1455514"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..952
                     /gene="pyrH"
                     /locus_tag="VGN19_10295"
     CDS             200..952
                     /gene="pyrH"
                     /locus_tag="VGN19_10295"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010523708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEV7196321.1"
                     /translation="MTAAPEQTPAPQTHNSRRRVLLKLSGEVFGGGKVGLAPDVVRTV
                     AQQIASSVREGIQVAVVIGGGNFFRGAELQQQGMDRTRADYMGMLGTVMNCLALQDFL
                     EKEGIETRVQTAIAMGQVAEPYIPRRAIRHLEKGRVVIFGAGAGMPFFSTDTVSAQRA
                     LEIKCDAVLMSKNGVDGVYDSDPRTNPNARKLDEITYAEALQQGLRVVDAAAFSLCME
                     NKLPMVVFGMEGEGNVVRALRGERIGTLVTPS"
     gene            1041..1598
                     /gene="frr"
                     /locus_tag="VGN19_10300"
     CDS             1041..1598
                     /gene="frr"
                     /locus_tag="VGN19_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018771654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEV7196322.1"
                     /translation="MIEETILEAEEKMEKAVEVAKEDFAGIRTGRATPGMFNKLLVNY
                     YGAPTPLQQLASFQTPEARTILISPFDKSAMHEIEKTLRDSDLGVNPSNDGNVIRCVL
                     PQLTEERRRDYIKLARHKGEDAKVSIRNIRRKAKDELDRLVKDGEVGEDDGARGEKEL
                     DATTKKYVDSVDDLLKGKEAELLEV"
     gene            1623..2561
                     /locus_tag="VGN19_10305"
     CDS             1623..2561
                     /locus_tag="VGN19_10305"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004605 - phosphatidate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEV7196323.1"
                     /translation="METHPSRSARREARREPSGGASSSSGGASPAAEGASSSTPTRTS
                     RAGRNLPAAIGVGVGLGILIIGSLVLRKELMLVIIVAAIGVGVWELRRGLAQVGINVP
                     LVPSLVGSVSMILSAYRGGGQALSVTLGLTCVGILLWRIADGVGDAVRDVAGGFFVAV
                     YPSFLAGFAALMLAPQDGARRTVTFILVTVLSDVGGYAFGVVFGKHPMAPSVSPKKSW
                     EGFAGSVLTCVVGGAIAVPLLVHGPWWGGAVLGACAAVAATVGDLTESTIKRDLGIKD
                     MSTILPGHGGAMDRLDSLLLVAPIAWALLQVLVPPR"
     gene            2622..3791
                     /gene="rlmN"
                     /locus_tag="VGN19_10310"
     CDS             2622..3791
                     /gene="rlmN"
                     /locus_tag="VGN19_10310"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEV7196324.1"
                     /translation="MTTDLPEPSVGRPEPGQLTFAAPRRGRPPRHLADLTAAERKDAV
                     EALGHKGFRAKQLSTHYFERLVESPEDMTDLPKAIRDELVADLLPTLLTPLVQRTADD
                     GATIKSAWRLHDGAIVESVLMRYPKRVTICISSQAGCGMNCPFCATGQAGLTRNMSTA
                     EIVEQVVAAGRLLRRGELSGGGDAEDREAPLRVSNVVFMGMGEALANYKAAIGAIRRM
                     TDPTPDGLGMSARGITMSTVGLVPAIDKLAAEGIPVTLALSLHAPDDELRNELVPINT
                     RWKVDEALDAAYRYYETTGRRVSIEYALIRDINDHAWRADLLGEKLAARGRGWVHVNP
                     IPLNPTPGSKWTASRHGVEQQFVERLRAHGIPTTIRDTRGQDIDGACGQLAAATA"
     gene            3811..5028
                     /locus_tag="VGN19_10315"
     CDS             3811..5028
                     /locus_tag="VGN19_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196325.1"
                     /translation="MRHTAASAPASIAVVGALLLAGCAAATSTGSATGDASRASPGTT
                     STAKVLTAPSTQVHSAVVPAAEKPLRAGERLVTVRMPAAYTPSAPTPPGTDDYRCFLL
                     DPHLVAPSVVTGLTVLPGNPRIVHHVILFRVPPDQVARARQLDAQQPGQGWTCFGGTG
                     IESEATGLDSAPWLGAWAPGGGEQVLSPDLGLPMAAGSRIIMQVHYNLLAGRSPDRSA
                     ARLRIAADDGTRKTLQTVLLPAPVELPCRLAAASNPLCSRPAAMADVVQRFGLAGRIG
                     DALHLICPGVLAGPTQSCTRTVTQPSTIRAVAGHMHLLGRSITITVNQGKPTARVVLD
                     IPVWDFDNQGSRPVQPPMTLRPGDTLTVSCTHDQSLRDRLPAFAGQPERYVVWGEGTT
                     DEMCLGIVLVTRP"
     gene            5052..5972
                     /gene="purU"
                     /locus_tag="VGN19_10320"
     CDS             5052..5972
                     /gene="purU"
                     /locus_tag="VGN19_10320"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013837959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEV7196326.1"
                     /translation="MSPATPRATPPLTARATPAGPEPGREFVLTVSCADRRGIVHAVS
                     GVMLELSMTILDSQQFADGSSGEFHLRMHLLREGEPLPVAAVDAAMSGVVARYEMAYA
                     AHDLSQRRRVLVMVSRQGHCLHDLLFRVESGSLPIEIPAIVSNHEDFRDLAAWHGVPF
                     HHLPVTPETKADAEAELRRLVRDYRADTIALARYMQVLSADFCAELPGRIINIHHSLL
                     PSFKGAKPYSQAHDRGVKVIGATAHYVTADLDEGPIIEQDFRRVDHRMSPAELASVGQ
                     ELEAMAFARAVRWHAEHRVVLRGGRTIVFD"
     gene            complement(5978..6496)
                     /locus_tag="VGN19_10325"
     CDS             complement(5978..6496)
                     /locus_tag="VGN19_10325"
                     /inference="COORDINATES: protein motif:HMM:NF020906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1990 domain-containing protein"
                     /protein_id="HEV7196327.1"
                     /translation="MRLADLADLNLTYTPQGRTLDGPLPSGYDHLTVERRIGVGSAAY
                     GRGVEAVMTFGAQRRTGLRPRSTAPRAAVGVDLLSRLGPSPVPCRVVWAVEGPTRSGF
                     GYGTLEGHVESGEEGFLVELRGEDVYAVIRAYSVPAHWLTRNAGPVLPRLQRAAALAY
                     VHALRRAVAEPG"
     gene            complement(6519..7643)
                     /locus_tag="VGN19_10330"
     CDS             complement(6519..7643)
                     /locus_tag="VGN19_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rossmann fold nucleotide-binding protein"
                     /protein_id="HEV7196328.1"
                     /translation="MHSARRSTPATEIENLRSLDAALASGLPLTGLRLQDLDLTAYQD
                     ALLSHTDVEGMVVLGGRLPAALDAHLRAHHALVFPTDPAAPIDPYRATLYSPDELYAG
                     LSEGGYEATPDFRAYEWLQDAAVRGDALVTLLRAIHDDSITDALDEFTADRPVVGVMG
                     GHALARGSTAYGEAARLGHVLATAGLVVATGGGPGAMEAANLGALVADPHTLETALDA
                     LAAVPTFRPSVRAWAELALRLRRGLERSRIPRSVGIPTWFYGHEPPNVFCDGIGKYFS
                     NAVREDGLLARSTAGLVVLEGAAGTVQEVFQAVTPRFYAGLDSVLPPLVLVGQEYWVD
                     TVPVWPTVRALGQDRPFADAVHLVDSIDEAAALITAGLPR"
     gene            7676..8647
                     /locus_tag="VGN19_10335"
     CDS             7676..8647
                     /locus_tag="VGN19_10335"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEV7196329.1"
                     /translation="MGGPFSEVVASPEWQRTAHEWIGASLAGAGHTLQGDIEQRRIRP
                     WSTQLVAPTNRGPAWFKANCPALAFEPAVHAELSGLVPDEVDPPLAVDGTRGWMMTSD
                     RGATLGELRTATLEDWVAVVRLAATLQRRVMDSGERLIGAGLPDCGPDTVVARHDWLV
                     DELSGLPPAHPSHLGAAETLSLRGTRAPVEEAVLQLQEAALPVTFQHGDLHPKNVFVA
                     DGGLRLFDFGDAQWAHALEILAVPYGWLTRLTDLPWSHVLDAYASCWSDVVSREQLES
                     LFPAAMVTHAVNRSFTWFGAIQGARPDELAEWGDAPAHYLRLAHTPL"
     gene            complement(8659..9051)
                     /locus_tag="VGN19_10340"
     CDS             complement(8659..9051)
                     /locus_tag="VGN19_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03618 family F420-dependent PPOX class
                     oxidoreductase"
                     /protein_id="HEV7196330.1"
                     /translation="MADARADLSPAAVQFLKARHLATLTTLRPDGSPHVVPVGFTWDP
                     FAGVARVITSAASRKARNAAAAGTPAVLCQVDGRHWLSLEGPVLVRADLASVRAAEQR
                     YAERYRVPRENPQRVVLEITVHRVLGNL"
     gene            complement(9067..10467)
                     /locus_tag="VGN19_10345"
     CDS             complement(9067..10467)
                     /locus_tag="VGN19_10345"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7196331.1"
                     /translation="MTTPLWWEGSDSAPAASGPSPYASRYPSPGLPGPSVPSTADVVI
                     VGGGFTGLWTAHYLTVADPSLDIVVLEAEHVGFGASGRNGGWVSALWPVGPEALARRS
                     GRPAALAMLSALRETVVEVGRAAEQLGVDCGFRQGGVVALARSSAQEARARAEVAHSD
                     EWAMGTQWLGPAQASARLAASELRGATFNPHCARIHPRRLVDGLAASVRARGVQVVEG
                     ATVCRIEPASVVLQDGHRVRARHIIRATEAWTSRLPGLRREVAPVYSLMVATEPLTEQ
                     EWSTIGLADGEVFTDHRHVVIYGQRTVDNRLAFGGRGAPYHFGSQIRPEFDHEATVFA
                     DLRSTLTGILPQLDRVRFTHAWGGPLGIARDWHPSVGYDAATGLGWAGGYVGDGVAAT
                     NLAGRTLADLVTRRHTALTELPWVGHHSRRWEPEPLRWFGVNAGLRLAHAADLEEART
                     GHPARLGRALAALTGH"
     gene            complement(10469..11842)
                     /locus_tag="VGN19_10350"
     CDS             complement(10469..11842)
                     /locus_tag="VGN19_10350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006591294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEV7196332.1"
                     /translation="MSDAARDHLWGHFTRHSVFEPKEAGGSGGSWPIITRGEGHKIWD
                     DRGNEYIDGLSGLFVVQVGHGRAELADAAAKQAKELAFFPLWSYAHPRAIELAERLAA
                     GAPGDLNRVFFTTGGGEAVETAWKLAKQYFKLTGKPNKHKVISRAVAYHGTPQGALSI
                     TGIPAAKEMFEPLVPGAFKVPNTNSYRAPEHLRDDDKAFGRWAADRIAEAIEFEGPDT
                     VAAVFLEPVQNSGGCFPPPPGYFERVREICDEYDVLLVSDEVICAFGRIGSMFACDDF
                     NYIPDIITCAKGMTSGYSPIGAMIASDRLFEPFRKGTTYFPHGYTFGGHPVSAAVAMA
                     NLDIFEREGLNAHVKENAPRFRATLEKLRDLPIVGDVRGAGYFYGIELVKDKDTRETF
                     NDDESERLLRGYLSKALFDAGLYCRADDRGDPVIQLAPPLIVGQTEFDDIESRLRSVL
                     KGAEAHL"
     gene            complement(11905..12381)
                     /locus_tag="VGN19_10355"
     CDS             complement(11905..12381)
                     /locus_tag="VGN19_10355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEV7196333.1"
                     /translation="MARASNNSADVRLDDVSKAIIEQLQEDGRQSYATIAKRVGLSEA
                     AVRQRVQRLLDAGVMQIVAVTDPLQVGFRRQAMIGVRVDGDLTPVAEALTRMPEVDYV
                     VTTAGSFDLLVEVVCEDDDQLLQLLTKQIRVLPGVLTTETFVYLKLNKQHYNWGTR"
BASE COUNT         1933 a         4257 c         4328 g         1874 t
ORIGIN      
        1 atgctgtgtc tccttcgctg gggtgcaggt aaccctgcca tgcgcggctg acaccgggcg
       61 gaaccgggtt ggaaccggac tgacgcgggc tgaaggcggg cgcgaggagc ccccctgtcg
      121 ccatgaccgg gcatgcgctc gcgcgcgagt gtggaaggat cgggtgaccg ccccccaggc
      181 cccagcagga ggatccctcg tgaccgctgc ccccgagcag accccggctc cccagactca
      241 caactcccgc cgacgggtgc tgctcaagct ctccggcgag gtgttcggcg gaggcaaggt
      301 cgggttggcg ccggacgtgg tgcgcactgt cgcccagcag atcgccagct ccgtgcgaga
      361 gggcatccag gtggccgtgg tgatcggcgg tgggaacttc ttccgtggcg ccgagctcca
      421 gcaacaaggg atggaccgta cccgggcgga ctacatgggg atgctcggca ccgtgatgaa
      481 ctgcctggcg ctgcaggact tcctcgagaa ggaaggtatc gagacccggg ttcagaccgc
      541 catcgccatg ggacaggtgg ccgagccgta catcccccgc cgcgcgatcc gccacctgga
      601 gaaggggcga gtcgtgatct tcggtgcggg cgcggggatg ccgttcttct ccaccgacac
      661 cgtgtccgcg caacgggccc tggagatcaa gtgcgacgcg gtgctcatga gcaagaacgg
      721 cgtggacggg gtctacgact ccgatccacg gacgaacccc aacgctcgca agctcgacga
      781 gatcacctac gccgaggctc tgcagcaggg ccttcgagtc gtcgatgccg ccgcgttcag
      841 cctgtgcatg gaaaacaagc tccccatggt ggtgttcggg atggagggcg agggcaacgt
      901 tgtccgggcg ctgcgtggtg agaggatcgg gacgctggtc actcccagct gagcggcgcg
      961 acccaccggc gggcagccgc cagcgagact gaccacaccg acacgtgaac ccgcacggag
     1021 tgcggcagaa ggagccccag atgattgaag agaccatcct cgaggccgag gagaagatgg
     1081 aaaaagccgt tgaggtcgcc aaggaggact tcgccggcat ccgcaccggc cgggcgactc
     1141 ccggcatgtt caacaagctc ctcgtcaact actacggcgc cccgaccccg ctgcagcagc
     1201 tcgcgtcctt ccagaccccc gaggcccgca cgatcctgat cagccccttc gacaagtcgg
     1261 cgatgcacga gatcgagaag accctgcggg actccgatct cggcgtgaac cccagcaacg
     1321 acggcaacgt catccgctgc gtgctgcccc agctgaccga ggagcggcgt cgcgactaca
     1381 tcaagcttgc tcgccacaag ggcgaggacg ccaaggtctc gatccggaac atccgccgca
     1441 aggcgaagga cgagctcgac cgcctggtca aggacggaga ggtcggcgaa gacgacggcg
     1501 cccgcggtga gaaggagctg gacgccacga cgaagaagta cgtcgactcg gtcgacgacc
     1561 tgctcaaggg caaggaagcc gagctcctcg aggtctgagg cgcagcccga ccaccagcca
     1621 ccatggagac ccacccgtcc cgcagcgccc gccgcgaagc tcgacgcgag ccgtccggtg
     1681 gggcttcgtc gtcgtccggg ggggcttcgc cggcggctga gggggcctcg tcgtcgacgc
     1741 cgacccgtac ctcccgcgcc gggcggaacc tgccagccgc catcggtgtc ggcgtcggcc
     1801 tcggcatcct gatcatcggc tccctcgtgc tccgcaagga gctcatgctg gtcatcatcg
     1861 ttgccgccat cggcgtgggg gtctgggagc tgcgtcgtgg gctcgcccag gtcgggatca
     1921 acgtccccct ggtgcccagc ctggtgggca gcgtcagcat gatcctgtcc gcgtaccgcg
     1981 gtggcggcca ggccctttcc gtgaccttgg gcctcacctg cgtcgggatc ctgttgtggc
     2041 gcatcgccga tggcgtgggg gatgccgtaa gggacgtcgc cggcgggttc ttcgtcgccg
     2101 tctacccctc gttccttgcc gggttcgcgg cgctgatgct ggcgccacag gacggggcca
     2161 gacgcacggt cacgttcatt ctcgtgacgg tgctgagcga cgtgggtggc tacgccttcg
     2221 gggtcgtgtt cggcaagcac cccatggcgc cctcggtcag cccgaagaag tcctgggagg
     2281 gcttcgccgg atcggtcctg acctgcgtcg tgggtggcgc gattgccgtc ccgttgctcg
     2341 tgcacgggcc ctggtggggt ggcgcggtgc tgggtgcctg cgcggctgtg gccgcgacag
     2401 tcggcgacct gaccgagtcg acgatcaaac gcgacctcgg catcaaggac atgagcacga
     2461 tcctgccggg ccacggtggc gccatggacc ggctcgactc cctgctcctg gttgccccca
     2521 tcgcgtgggc gctgctgcag gtgctggtcc cacctcggta ggggtgcggg acagggccgt
     2581 ggatcgtctg gaccggcaga cctgagagac tggggaccac catgaccacc gacctgcccg
     2641 agccctcagt cggacgcccc gagccgggcc agctgacctt cgcagcaccc cggcgcggta
     2701 ggccaccgcg ccacctggcc gacctcaccg ccgctgagcg caaggacgcg gtcgaggcgc
     2761 tggggcacaa gggatttcga gccaagcagc tctccacgca ctacttcgag cgccttgtcg
     2821 agtcgcctga ggacatgacg gatctgccca aggccatccg tgacgagctc gtcgccgacc
     2881 tgttgcccac cctgctcacc ccgctggtgc agcgcacggc cgacgatggc gcgaccatca
     2941 agtccgcctg gcggctgcat gacggggcga tcgtcgagtc ggtcctcatg cgttacccca
     3001 agcgcgtgac gatctgcatc tccagccagg ccgggtgtgg catgaactgt ccgttctgcg
     3061 ccaccggtca ggcgggactg acccgaaaca tgtcgacggc agagatcgtg gaacaggtcg
     3121 tcgcggccgg tcgcctgctg cgacgcgggg agctgtccgg tggcggcgat gccgaggatc
     3181 gcgaagctcc acttcgagtc tccaatgtcg tgttcatggg gatgggcgag gcgctcgcga
     3241 actacaaggc ggcaatcggt gccatccgac gcatgacgga cccgacgccc gacgggctgg
     3301 ggatgtcggc gcgcggcatc accatgtcga cagtcgggct cgtgcccgcc atcgacaagc
     3361 tggcggccga ggggatcccg gtcacgctgg ccctgtcact gcatgcgcct gatgacgagc
     3421 tgcgcaacga gctcgtcccg atcaacactc gttggaaggt cgatgaggcg ctcgatgcgg
     3481 cctaccgcta ctacgagacg accggccggc gggtgagcat cgagtacgcg ctcatccggg
     3541 acatcaacga ccacgcgtgg cgggctgacc tgctgggcga gaagctggcg gcgcggggga
     3601 ggggctgggt ccacgtcaac cccatcccac tcaacccgac gcctggctcg aaatggacgg
     3661 cgtcacgcca cggggtcgag cagcagttcg tggaacggct acgggctcac ggaatcccga
     3721 cgacgattcg tgacactcgc ggtcaggaca tcgacggggc gtgcgggcaa ctcgctgctg
     3781 cgacggcctg atcctgccta cactgcagcg gtgaggcaca ccgccgcatc cgcccccgct
     3841 tccatcgccg tggttggcgc cctgctcctg gccggatgtg ctgccgccac ctcgacgggg
     3901 tcggcgacag gcgacgcatc gagagcgtcg cctggcacga cgtcgaccgc caaggtcctc
     3961 acagcgccat cgacgcaggt gcacagcgct gtcgtaccgg ccgcggagaa gccgctacgc
     4021 gccggcgagc ggttggtcac ggtgcggatg ccagcggcat acaccccctc tgcccccaca
     4081 ccacccggca ccgacgacta tcgctgcttc ctgctcgatc cgcacctggt cgctccctcg
     4141 gtggtgaccg gcctgaccgt gctgccgggc aacccgcgga tcgtgcacca cgtgatcctt
     4201 ttccgcgtgc cgcccgacca ggtggcgcga gcgcggcagc tggacgcgca gcagccgggc
     4261 caagggtgga cgtgcttcgg cggcaccggg atcgagagtg aggccacggg tctggacagc
     4321 gctccgtggc tgggcgcatg ggccccgggg ggcggtgagc aggtcctgtc gcccgacttg
     4381 ggtctaccca tggctgccgg ctcgcggatc atcatgcagg tgcactacaa cctgctggcg
     4441 ggcaggtcgc ccgaccggag cgccgcacgc cttcgcatcg ccgctgacga cgggacgcgt
     4501 aagaccctgc agaccgtgct gctgccggct cccgtggagc tgccctgccg actggctgcg
     4561 gccagcaacc cgctgtgctc gcgtccggca gccatggccg atgtcgtgca acggttcggg
     4621 ctcgccgggc gcatcgggga cgcactgcac ctgatctgtc ccggcgtgct ggctggtccc
     4681 acgcagagct gcacgcgcac ggtgacccag ccctcgacca tccgggccgt cgccggtcac
     4741 atgcacctgc tcggtcgctc gatcaccatc actgtgaacc agggaaagcc gaccgcgcgg
     4801 gtggtcctcg acatcccggt gtgggacttc gacaaccagg gcagccgtcc ggtgcagccg
     4861 ccgatgaccc tgcgcccagg ggataccctg accgtctcct gcactcacga ccagagcctg
     4921 cgcgaccgac tccccgcctt cgccggacag cccgagcggt atgtggtctg gggtgagggc
     4981 accaccgatg agatgtgtct cgggatcgtc ctcgtcaccc gcccctgacc aggccgccct
     5041 aggctggcca cgtgtcgcct gccaccccgc gagccacccc gccactcacc gcgcgagcca
     5101 ctcccgctgg gcctgagccc ggccgcgagt tcgtcctcac cgtctcgtgt gccgaccgcc
     5161 gcggcatcgt ccacgccgtc tcaggggtca tgctcgagct gtccatgacg atcctcgaca
     5221 gccagcagtt cgccgacggc agctcgggtg agttccacct gcgcatgcac ctgctgcgag
     5281 aaggcgaacc gctgcccgtg gcggccgtcg acgcagccat gtcgggggtg gtcgcgcgtt
     5341 acgagatggc gtatgccgcc cacgacctct cccagcggcg gcgcgtcctg gtcatggtga
     5401 gccggcaggg gcattgcctg cacgacctgc tgttccgggt cgagagcggg tcccttccga
     5461 tcgagatccc ggcgatcgtg tcgaaccatg aggacttccg agacctcgcg gcgtggcacg
     5521 gcgtgccgtt ccaccacctc ccggtgaccc ccgagacgaa ggccgacgcc gaggccgagc
     5581 tgcggcggct ggttcgcgac taccgggcgg acaccatcgc cttggcgagg tacatgcagg
     5641 tgttgtcggc agacttctgc gccgagctcc cggggcgcat catcaacatc caccactcgt
     5701 tgttgcccag tttcaagggt gccaagccgt actcccaggc gcacgaccgt ggcgtgaagg
     5761 tgatcggtgc gaccgcgcac tacgtgacgg cggatcttga cgaggggccc atcatcgagc
     5821 aggacttccg tcgggtcgac caccggatga gccccgccga gctggcgtca gtcggccagg
     5881 agctcgaggc gatggccttt gcccgagccg tgcgatggca tgccgagcac cgcgtggtgc
     5941 tgcgcggggg acggacgatc gtcttcgact gagctcatca gcccggttcg gccaccgccc
     6001 gacgcagggc gtgcacgtag gccagtgctg ccgcgcgctg cagcctcggc aggacagggc
     6061 cggcattccg ggtgagccaa tgggccggca ccgagtaggc gcggatcacg gcatacacgt
     6121 cctcaccgcg gagctcgacg aggaagccct cctcgccact ctccacatgc ccttcgaggg
     6181 tgccgtagcc gaacccgctt cgagtcggcc cctccaccgc ccacaccacc cggcacggca
     6241 ccggacttgg tcccagtcgg ctgagcaggt cgacccccac tgccgcacgc ggcgccgtcg
     6301 atcgcggccg aagccccgtg cgccgctggg caccaaacgt catcaccgcc tccacccctc
     6361 ggccgtatgc cgcggagccc accccgatcc gccgctcgac ggtgaggtgg tcgtagccgc
     6421 tcggaagtgg gccgtcgagg gtgcggcctt gcggggtgta ggtgaggttc aggtcggcaa
     6481 ggtccgcgag gcgcacggct cagctcctcc gttagcagtc atcggggcag gccggccgtg
     6541 atcagggcgg ccgcctcgtc gatggagtcg accaggtgca cggcgtcggc gaatgggcgg
     6601 tcctgaccca gggcgcggac tgtcggccac accgggacgg tgtccaccca gtactcctga
     6661 cccacgagaa ccagcggtgg gaggacactg tcgagtcccg catagaaacg cggggtcacc
     6721 gcttggaaca cctcctggac ggtgcccgcg gctccctcga gaacgacgag cccggccgtc
     6781 gaccgggcca gcagaccgtc ctcgcggacg gcattggaga agtacttgcc gatcccgtca
     6841 cagaacacgt tgggcggctc gtgaccgtag aaccaggtgg ggatccccac gctgcgcggg
     6901 atgcggctcc gttcgagacc ccgccggagc cgcagtgcca gctcggccca ggcgcgcacg
     6961 gagggtcgga acgtcggcac ggcggccagg gcgtccaggg cggtctcaag cgtgtgtggg
     7021 tcggcgacca acgccccgag attggcggct tccatcgcgc ccggtccgcc acccgtcgcc
     7081 acgacgagac cggccgttgc cagcacgtgc cccagccggg cggcttcgcc atacgcggtc
     7141 gagccgcgcg ccagggcgtg tccgcccatc acgcccacga caggccggtc ggcggtgaac
     7201 tcgtcgaggg catcggtgat ggagtcgtcg tggatcgcgc ggagcagcgt gaccagtgcg
     7261 tcgccacgga ccgcggcgtc ctggagccat tcgtaggcgc ggaagtccgg ggtggcctcg
     7321 tacccacctt cgctcaagcc ggcatacaac tcgtcgggtg agtacagggt ggcccggtag
     7381 gggtcgatcg gagccgccgg gtcggtcggg aacaccagcg cgtggtgggc tcgcagatgc
     7441 gcgtcgaggg ccgcgggaag ccgtccgccg aggacgacca tgccctcgac atcggtgtgg
     7501 gacagcagag cgtcctggta tgccgtgagg tccaggtcct gcaggcgcag tccggtcagc
     7561 ggcagcccag aggccagggc ggcgtccaac gagcgaaggt tctcgatctc cgtggcgggc
     7621 gtgctcctgc gggcactgtg catggctcga ctctagagcc gcctaggctg accgcatggg
     7681 cggtcccttc agcgaggtcg tcgcgagccc cgagtggcag cggaccgcac atgagtggat
     7741 cggcgccagc ctcgccggcg cgggccacac gcttcagggc gacatcgagc agcgtcgcat
     7801 ccggccctgg tccacccagc tcgtggcccc cacgaacagg ggtcccgcat ggttcaaggc
     7861 aaactgcccc gcgctcgcgt tcgagcccgc tgtgcacgcc gagctgtccg ggctggtgcc
     7921 ggacgaggtc gacccgccgc tggccgtcga cggaacccgc ggctggatga tgacctcgga
     7981 ccggggcgcc accctcggtg agctcaggac agccaccctc gaggactggg tggcggtggt
     8041 tcggctcgcc gcgaccttgc aacgccgggt gatggactcg ggggagcggc tgatcggcgc
     8101 gggcctgccg gactgcggac cagacaccgt ggtcgcacgc catgactggc tggtcgacga
     8161 gctctccggg ctgcccccgg cacatccctc gcatctcggt gccgccgaga cgctgtccct
     8221 gcggggcacg cgggcgccgg tcgaggaagc tgtcctgcag ctgcaggaag ctgcgctgcc
     8281 agtgaccttc cagcacggtg acctgcatcc gaagaacgtc ttcgtggccg acggcgggtt
     8341 gcgacttttc gacttcggcg acgcccagtg ggcccacgcg ctggagatcc tcgccgttcc
     8401 gtatggctgg ctcacccggc tcaccgacct gccgtggtcg cacgttctcg atgcgtacgc
     8461 gagctgctgg tcggacgtgg tgtcgcgtga gcagctggag agtctgtttc cagcggcgat
     8521 ggtcacgcac gcggtgaacc gttccttcac ctggttcggc gcgatccagg gggcaaggcc
     8581 ggacgagctc gcggagtggg gcgacgcgcc ggcgcactac ctgcgcctgg cgcacacgcc
     8641 gctctgaccg atcggtggct agaggttccc gaggactcga tgcacggtga tctccagaac
     8701 cacgcgctgg gggttctcgc ggggcacgcg gtaccgctcg gcataccgct gctcggcagc
     8761 gcgcacgctc gcaaggtcgg cacggaccag gacggggccc tcgagggaga gccagtgccg
     8821 accgtccacc tgacacagca ccgcgggggt gcctgcggcg gctgcgttgc gcgccttgcg
     8881 gctggcggcg ctggtgatga cccgagccac gcccgcgaac gggtcccagg tgaatcccac
     8941 gggcacgacg tgtggagatc catcggggcg cagcgtggtg agcgtcgcga ggtgacgtgc
     9001 cttcaggaac tggacggcgg cgggggacag gtcagcgcgt gcatcggcca cgggggcgag
     9061 tcttccctag tgaccggtga gtgcggcgag cgcacgaccc aacctggccg gatgaccggt
     9121 ccgcgcctct tcgaggtcgg cggcgtgagc caggcgcagg ccggcgttga cgccgaacca
     9181 ccgcagcggt tccggctccc agcgacggct gtgatgtcct acccagggga gctcggtcaa
     9241 cgccgtatgc cgcctcgtca ccagatccgc gagcgtccgg ccggcgaggt tggtcgcagc
     9301 gaccccgtct ccgacgtagc cgccggccca gcccagtccg gtggcggcgt cataccccac
     9361 gctggggtgc cagtcccggg cgataccgag cggacctccc caggcatggg tgaaccgaac
     9421 ccggtccagc tggggcagga tgccggtcag cgtggagcgc agatcagcga ataccgttgc
     9481 ctcgtggtcg aactcgggtc gaatctgcga cccgaaatga tacggcgcgc ccctgccgcc
     9541 gaaggcaagc cggttgtcca cggtgcgctg cccgtagatc acgacgtggc gatggtcggt
     9601 gaacacctca ccgtccgcca gaccgatcgt cgaccactcc tgctcggtga gtggttcggt
     9661 ggccaccatc aacgagtaca caggtgccac ttcgcggcgg aggccaggca gacgcgacgt
     9721 ccaggcttcg gtggcgcgga tgatgtgtct cgcgcgaacc cggtggccgt cctgcagcac
     9781 gacggaggct ggctcgatcc ggcacacggt ggcgccctcg acaacctgca cgccgcgagc
     9841 ccgcacggag gcggccagcc cgtcgacgag ccggcggggg tggattcgcg cgcagtgcgg
     9901 gttgaaggtg gccccgcgca gctcgctggc cgccagccga gcgctggcct gcgccgggcc
     9961 gagccattgc gtgcccatcg cccattcgtc ggaatgggcc acctcggccc gggcccgcgc
    10021 ctcctgagct gatgacctgg caagcgcgac aacgccgccc tgtcggaagc cacagtcgac
    10081 gccgagctgt tctgcggccc gacccacctc gaccacggtc tcccgaaggg cgctgagcat
    10141 cgcgagcgcg gcggggcgcc ccgagcggcg cgcgagggcc tccggtccca ccggccacaa
    10201 ggccgacacc cagccaccgt tgcgaccgct ggcaccgaaa ccgacatgct cggcctcgag
    10261 cacgacgatg tccaagctcg gatcggcgac cgtcagatag tgggcggtcc acaaccccgt
    10321 gaagcccccg ccgacgatga cgacgtcggc ggtcgagggc acggacggcc ccggcagacc
    10381 gggcgagggg tagcgggagg cataggggga gggcccggat gccgcaggtg cggaatccga
    10441 gccctcccac cacaggggtg tggtcacgtc agagatgcgc ctcagcgccc ttgagcaccg
    10501 accgcagtcg agactcgatg tcatcgaact cggtctgacc gacgatcagc gggggcgcga
    10561 gctggatcac cgggtcgccc cggtcgtcgg cccggcagta caggccggcg tcgaacagtg
    10621 ccttggacag gtacccgcgc aggagccttt cggactcgtc gtcgttgaag gtctcgcggg
    10681 tgtccttgtc cttgacgagc tcgatgccat agaagtagcc cgcaccccgg acgtcaccga
    10741 cgatgggcag gtcgcggagc ttctcgagcg tcgcgcggaa tcgaggtgcg ttctccttca
    10801 cgtgggcgtt gaggccctcg cgctcgaaga tgtcgaggtt ggccatggca acggccgccg
    10861 agaccgggtg cccaccgaag gtgtagccgt gcgggaagta ggtcgtcccc ttccggaacg
    10921 gctcgaacag ccggtcgctg gcgatcatgg cgccgatggg ggagtacccc gaggtcatgc
    10981 ccttggcaca cgtgatgatg tcggggatgt agttgaagtc gtcgcaggcg aacatcgacc
    11041 cgattcgacc gaacgcgcag atgacctcgt ccgaaaccag cagcacgtcg tactcgtcgc
    11101 agatctcgcg gacgcgctcg aagtagccgg gcggtggcgg gaagcagcca cctgagttct
    11161 ggacgggctc gaggaagacc gccgcgacgg tgtcgggacc ctcgaactcg atggcctccg
    11221 cgatgcggtc ggcggcccag cgaccgaacg ccttgtcgtc atcgcgcagg tgctcgggtg
    11281 cacggtagga gttggtgttc ggcaccttga aggccccggg cacgaggggt tcgaacatct
    11341 ccttggcggc agggatcccg gtgatggaca gcgcgccttg cggggtgccg tggtaggcca
    11401 ccgcgcggct gatcaccttg tgcttgttgg gcttgcccgt cagcttgaag tactgcttgg
    11461 ccagcttcca ggccgtctcg accgcctcgc cgccgccggt cgtgaagaag acgcggttga
    11521 ggtctcccgg ggcgccggcg gccaagcgtt cggcgagctc gatcgcccgg gggtgggcgt
    11581 aggaccagag ggggaagaac gccagctcct tggcctgctt cgcagcagcg tcggcgagct
    11641 cggcgcggcc gtgcccgacc tgaacgacga acagacccga cagcccgtcg atgtactcgt
    11701 tgcctcggtc gtcccagatc ttgtggccct cgccgcgggt gatgatcggc caggacccgc
    11761 cgctgcctcc tgcctccttg ggctcgaaga cggagtgccg cgtgaagtgg ccccacaggt
    11821 ggtctcgggc cgcgtcgctc atcagggcgc cggtgggcgt gtgggtgtcg ctggacggct
    11881 cgaagatcgc cgacggttct gtggtcatcg tgttccccag ttgtagtgct gcttgttgag
    11941 tttcaggtag acgaacgtct cggtggtcag gactcccggg aggacccgga tctgcttggt
    12001 gagcagctga agcagctggt cgtcgtcctc gcacaccacc tcgacgagca ggtcgaagct
    12061 gcccgcagtg gtgacgacat agtcgacttc cggcatccgc gtgagcgcct cagccacggg
    12121 ggtgagatcg ccgtccactc ggacgccgat catggcctgc cggcgaaagc ccacctggag
    12181 cgggtcagtg acggccacga tctgcatgac ccccgcgtcg agcagccgct gcaccctctg
    12241 ccgcacggcg gcctcggaaa ggcccacccg cttggcgatg gtggcgtacg actgacgacc
    12301 gtcctcctgt aactgctcga tgatcgcctt cgacacgtcg tcgaggcgaa cgtctgcaga
    12361 gttgttggaa gcgcgggcca cgcggccatc gt
//
LOCUS       DASYFY010000512         8070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1140080, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000512 DASYFY010000000
VERSION     DASYFY010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8070
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1140080"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VGN19_10360"
     CDS             <1..478
                     /locus_tag="VGN19_10360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012853617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA recombination/repair protein RecA"
                     /protein_id="HEV7196334.1"
                     /translation="FINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG
                     TEPVGNRTRVKVVKNKVSPPFKQAEFDILYGFGISREGGLIDMGVEQGFVRKAGAWYT
                     YDGDQLGQGKENARQFLKDNPDLADEIEKKIKEKLGIGPQVDKPAIAAVPEVPVEF"
     gene            484..1089
                     /locus_tag="VGN19_10365"
     CDS             484..1089
                     /locus_tag="VGN19_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HEV7196335.1"
                     /translation="MTDRHDAARAALEAALAAAASLRPDSIPADPEQDLQTRDGEPDP
                     YDVARQIVLRQLALAPKSRKQLEDKLRQRNCPEDVAQAVLDRMAAVGLVDDEAFAGML
                     VRSQQAGRGLAKRALARELRTKGVDDETARATLESIDPQQERVRAEQLVAKRLKTMHG
                     LEAPVQTRRLAGMLARKGYPADLSMAVIREAVANAPEHQRD"
     gene            1123..2640
                     /gene="miaB"
                     /locus_tag="VGN19_10370"
     CDS             1123..2640
                     /gene="miaB"
                     /locus_tag="VGN19_10370"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEV7196336.1"
                     /translation="MSTSTAHLTYDVRTHGCQMNVHDSERLAGLLETAGYVDVHSLPV
                     DRRPEAADVVVFNTCAVRENADNKLYGNLGQLRPAKQRNPDMQIAVGGCMAQKDRSTI
                     VTRAPWVDVVFGTNNIGSLPVLLERARHNKRAEVEILESLEVFPSTLPTRRDSAYAGW
                     VSISVGCNNTCTFCIVPSLRGTEADRRPGDVLAEIKALVDQGVVEVTLLGQNVNTYGV
                     EFGDRLAFGKLLRACGDIDGLERVRFTSPHPAAFTDDVIAAMAETPNVMPSLHMPLQS
                     GSDKVLKNMRRSYRSTKFLGILDKVRAQIPDAAITTDIIVGFPGETETDFEETLRVVR
                     ESRFASAFTFQYSIREGTPAATMADQVPKAVVQERYDRLLEVQEQVSWAENRAIEGRE
                     VEVLVATGEGRKDTATHRLSGRARDNRLVHFSVPEGADRPRPGDLVTVGVTYGAPHHL
                     VADGALEGGTYAVRRSAGGDAWAALQDAPVPGKPAVALGMPGLGRPAPVAAPVCR"
     gene            2665..3264
                     /gene="def"
                     /locus_tag="VGN19_10375"
     CDS             2665..3264
                     /gene="def"
                     /locus_tag="VGN19_10375"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEV7196337.1"
                     /translation="MTIRPIVITGEPVLHRRAEPVPAFDAELAALVGDMFETMAAAHG
                     VGLAAPQIGVGLRVFTWQMDNEDGVPTRGVIVNPFVASTKPSLEEPDPHDEEEGCLSV
                     PGESFPLKRGERATVTGFDPEGREVSFEASGWFARCMQHEYDHLNGFLYVDRLNERWS
                     KKARKAVKRAGWGTPGFSWMPGVDPDPFGHDDPDHQLDL"
     gene            3266..4198
                     /gene="miaA"
                     /locus_tag="VGN19_10380"
     CDS             3266..4198
                     /gene="miaA"
                     /locus_tag="VGN19_10380"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015779708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEV7196338.1"
                     /translation="MPQPLVVAVVGPTATGKSDLALELAELLGGEVVNADASQLYRGM
                     DIGTAKVPPSQRRGIPHHQLDVLDVTAEASVAAYQASARADIAAVQARGAHPILVGGS
                     GLYVRAALDRLDIPPTDPVVRARLDQEAELLGTPRLFARLTDADPQAASAIEPRNTRR
                     IVRALEVIELTGRPFSASMPTRQLVQPAVIVGLRLARPTLDERIEARVVRMWADGLLD
                     EARELEGRGLRQGRTASRALGYAQALAQLDGTMTQAQAQEQTAALTRRFARRQESWFA
                     PDPRICWIDAQSDDRRHHAQAVIEAAIRDNGDHD"
     gene            4191..5066
                     /gene="dapF"
                     /locus_tag="VGN19_10385"
     CDS             4191..5066
                     /gene="dapF"
                     /locus_tag="VGN19_10385"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEV7196339.1"
                     /translation="MTDQIAFTKGHGTENDFVLIPDLEGARELTAEDAATLADRHAGV
                     GGDGVIRVVQTAAATEAAVLEQASQARWFMDYRNADGSIAEMCGNGTRVFAAYLRREG
                     LETADEFAIATRAGVKVVRFESPDLIAVNLGPWRLAQPVIAEAEGFDALVHLDGFEPL
                     SALSLDLGNPHTVVALPEGLDLDLVDLHRPPVVNPSPAHGTNVELVRPLGAGHVRMRV
                     HERGVGETRSCGTGAAAAALATRFWAGERGDTWTVDVPGGRLRVRALPGHEVELTGPA
                     VLVADGTAHLGVHPT"
     gene            5088..6944
                     /gene="ggt"
                     /locus_tag="VGN19_10390"
     CDS             5088..6944
                     /gene="ggt"
                     /locus_tag="VGN19_10390"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007926206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEV7196340.1"
                     /translation="MSNPRVAVCAATAAGAVVFALSGPAAAQATVHGSIQGSTDQGPV
                     GSPLPKVPEMRGGGGAVSSVDPVASQVGINVLKAGGNAADAAVATAAALGVTEPYSTG
                     IGGGGFFVFYDARTGRVRTIDGRETAPKTFTENAFRESDGTPMDFTKAVNSGLSVGVP
                     GTPATWALAARSFGTMRLAELLKPAETVARRGFVVDQTFHDQTVANANRFSKFPATAK
                     VFLPGGSAPAVGSVFRNPDMATAYRELRTHGIASLYAGRLGRAVVAEARNPHTAAGFT
                     VPHGQITTGDLAAYRALPKAPVHSTYHGLDVYGMPVPSSGGIAVAEILNLLEAINRRT
                     GTPLRAVTNADYLHRFSEASALAFADRNRYVGDVPGVPVHELVSQGFARERACLFDPA
                     TALKRPVPFGSPDGSYATCGPTATTAHLPNDGQSTSHVVVTDRWGNAVSYTLTIEQTG
                     GSAITVPGWGFLLNNELTDFDFAPLSNGVPDPNLPGPGKRPRSSMSPTVILDHGQLRL
                     VAGSPGGATIITTVAQVLTEYLDRGLPLVDAIAAARLSSRNGAEQAEPALLNSPDAAA
                     LRAKGHVLVSTPEIGAATAIRVIGPNDFEAAAETVRRGGGSAMVVDPASPSP"
     gene            complement(6954..7571)
                     /locus_tag="VGN19_10395"
     CDS             complement(6954..7571)
                     /locus_tag="VGN19_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEV7196341.1"
                     /translation="MSSHDHYFTAEPASPAQQRVMTVRLAGREVSVRTAGGVFSPDAV
                     DKGTAVLLREVPAPPPSGTLLDLGCGWGPIALTLALTSPGATVYAVDVNERSLDLTRT
                     NASSLGLANVVATQPDGIPDDVRFDAIWSNPPIRVGKAVLHAMLQHWLPRLAPGGVAY
                     LVVQRNLGSDSLQRWLGEQLDTDAFSVTRFATDKGFRLIEVRRKR"
     gene            7645..>8070
                     /locus_tag="VGN19_10400"
     CDS             7645..>8070
                     /locus_tag="VGN19_10400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEV7196342.1"
                     /translation="MTLKRSDIFDSKAAALADEDGFLAHDGAAFDGDQYDREDRAALR
                     RVAGLSTELEDITEVEYRQLRLERVVLAAVWTEGTAQDADNSMRELAALAETAGSTVL
                     AGLVQRRQKPDTGTYLGSGKAEELRDIVISEGADTVICDT"
BASE COUNT         1291 a         2847 c         2759 g         1173 t
ORIGIN      
        1 cttcatcaac cagctgcgcg agaagatcgg agtcatgttc ggctcacccg aaacgaccac
       61 gggcggaaaa gctttgaagt tttacgcttc agttcgtttg gacgtccggc gaatcgagac
      121 gctcaaggac ggcaccgaac cggtcggcaa ccggacccgc gtcaaggtgg tcaagaacaa
      181 ggtgtccccg ccgttcaagc aggccgagtt cgacatcctc tacggcttcg gcatctctcg
      241 tgagggcggt ctgatcgaca tgggcgtcga gcagggcttc gtccgcaagg ccggtgcctg
      301 gtacacctac gacggcgacc agctggggca gggcaaggag aacgcccggc agttcctcaa
      361 ggacaacccc gacctggccg acgagatcga gaagaagatc aaggagaagc tcggcatcgg
      421 tccgcaggtc gacaagcccg ccattgctgc cgttcctgag gtccctgtcg agttctgatc
      481 cgcatgactg accgacatga cgcggccagg gcagccctcg aggccgccct ggccgcggcg
      541 gcatccctcc gacccgacag cattcccgcg gaccccgagc aagacctgca gacccgcgac
      601 ggcgagcccg acccgtacga cgtcgcccgt cagatcgtcc tgcgtcagct cgccctggca
      661 ccgaagtccc gaaaacagct cgaggacaag ctgcggcaac gcaactgtcc cgaggacgtg
      721 gcacaagcgg ttctcgaccg gatggcggcc gtcggtctgg tcgacgacga ggcgtttgcc
      781 ggcatgcttg tccggtccca acaggccggc cgtgggctgg ccaagagggc gctggcccgt
      841 gagctgcgga cgaagggcgt cgacgacgag accgcgcgcg ccaccctcga gtccattgac
      901 ccgcagcagg agcgcgtccg cgccgagcag ctcgtggcca agcgcctcaa gaccatgcat
      961 ggcctcgagg cacccgtgca gacgcgccgc cttgccggca tgctcgcgcg caagggctac
     1021 ccggcggacc tgtcgatggc ggtgatccgc gaggccgtcg cgaatgctcc ggagcatcag
     1081 cgtgactgag ccgggcaggc agcacgtacc cttgtccctg ccatgagtac ctccaccgcg
     1141 cacctgacct acgacgtccg gacccacggc tgccagatga acgtccacga ctctgagcgg
     1201 ctcgctgggc tgctggagac cgcgggctac gtcgacgtgc acagcctgcc ggtcgaccgg
     1261 cgtccggagg cggccgacgt cgtcgtgttc aacacctgcg ccgtccgtga gaacgccgac
     1321 aacaagctct acggcaacct gggccagctc cgcccggcca agcagcgcaa cccggacatg
     1381 cagatcgccg tcggcggctg catggcgcag aaggaccgct ccaccatcgt cacgcgagcc
     1441 ccgtgggtgg acgtcgtgtt cgggaccaac aacatcggca gcctgcccgt cctgctcgag
     1501 cgggcacgtc acaacaagcg tgccgaggtc gagatcctcg agagcctcga ggtctttccg
     1561 agcaccctgc ccacgcggcg cgactcggct tacgcgggct gggtctcgat ctccgtgggc
     1621 tgcaacaaca cctgcacgtt ctgcatcgtg ccgagcctgc gcggcacgga ggccgaccgg
     1681 cgccccgggg acgtgctcgc cgagatcaag gcgctcgtgg accaaggcgt tgtcgaggtg
     1741 accctgctcg ggcagaacgt caacacctac ggcgtggagt tcggcgaccg tctcgcgttc
     1801 ggcaagctct tgcgggcctg tggggacatc gacgggctcg agcgggtgcg gttcaccagc
     1861 ccgcaccccg cggctttcac cgacgacgtc atcgccgcga tggccgagac gccgaacgtc
     1921 atgcccagcc tgcacatgcc gctgcagtcg gggtcggaca aggtgctcaa gaacatgcgc
     1981 cgctcgtatc gcagcaccaa gttcctcggc atcctggaca aggtccgggc gcagatcccc
     2041 gacgccgcga tcacgaccga catcatcgtc ggcttccccg gcgagaccga gacggacttc
     2101 gaggagaccc tgcgcgtcgt ccgcgagtcc cggttcgcca gcgccttcac cttccagtac
     2161 tccatccgtg agggcacccc cgcggccacg atggccgacc aggtgcccaa ggcggtcgtc
     2221 caggagcgtt acgaccgact cctcgaggtc caggagcagg tgtcctgggc cgagaaccgt
     2281 gccatcgagg gacgcgaggt tgaggtgctt gtggccaccg gtgagggtcg caaggacact
     2341 gccacccacc gcctgtccgg ccgggcgcga gacaaccggc tcgtgcactt ctcggtcccc
     2401 gagggggcgg accgtccgcg cccgggcgac ctggtcaccg tcggggtgac ctacggtgcg
     2461 ccgcaccacc tcgtcgcgga cggtgcgctc gagggcggga cgtatgccgt gcgccgcagc
     2521 gccgggggcg acgcctgggc cgccctccag gacgccccgg tacccggcaa gccggccgtc
     2581 gccctcggga tgcccggcct gggccggccg gccccggtgg ctgccccggt ctgtcgctga
     2641 ccagatctgg aagactgccg acccatgacc atccggccca tcgtcattac gggcgagcct
     2701 gtcctgcatc ggcgggccga acccgtccct gccttcgatg ccgagctggc cgctctggtc
     2761 ggcgacatgt tcgagaccat ggctgccgcc cacggcgtcg gcttggctgc gccccagatc
     2821 ggggtggggc tgcgagtctt cacctggcag atggacaacg aggacggcgt gccgactcgc
     2881 ggcgtcatcg tcaacccgtt cgtggcctcc accaagccca gtctggagga gcccgatccg
     2941 cacgacgagg aagagggctg cctgtcggtg cctggcgaga gcttcccgct caagcggggc
     3001 gagcgcgcca cggtcaccgg cttcgacccg gagggtcgcg aagtgtcgtt cgaggcgtca
     3061 ggctggttcg cccggtgcat gcagcacgag tacgaccacc tcaacggctt cctctatgtc
     3121 gaccggttga acgagcgctg gtccaagaag gcgcgcaagg ccgtcaagcg ggcgggctgg
     3181 ggcaccccgg gtttcagctg gatgccgggg gtcgaccctg acccgttcgg gcatgacgac
     3241 ccggaccacc agctcgatct ctgagatgcc gcagcccttg gtcgtggcgg tcgtggggcc
     3301 gaccgcaaca ggcaagtccg atctcgccct ggagctggcc gagctcctcg gcggtgaggt
     3361 ggtcaacgcc gacgccagcc agctctaccg tggcatggac atcgggaccg cgaaggtgcc
     3421 gccgagccag cgacgcggca taccgcacca tcagctggac gtcctcgacg tcaccgcaga
     3481 ggcaagcgtc gccgcgtacc aggcctcggc tcgggcggac atcgcggcgg tgcaggcccg
     3541 gggcgctcac ccgatcctcg tggggggctc cggtctgtat gtccgggccg cactcgacag
     3601 gctggacatc ccgccgactg atccggtcgt gcgggctcgg ctcgaccagg aggccgagct
     3661 gctcggcacg ccgcggctct tcgcccgtct gaccgacgcg gacccccaag ccgcctcggc
     3721 gatcgagcca cgcaacaccc ggcgcatcgt gcgggcgctg gaggtcatcg agctgaccgg
     3781 tcggccgttc tcggcctcga tgccgacccg ccagctcgtc caacccgccg tcatcgtggg
     3841 tcttcgactg gctcgcccca cgctggacga acgcatcgag gcgcgcgtgg tccggatgtg
     3901 ggccgacggg ctgctcgacg aggcgcgcga gctcgagggc cgcggcctgc gccagggccg
     3961 caccgcttcg cgcgccctcg gctacgcgca agcactggcc cagctcgacg ggaccatgac
     4021 gcaagcgcag gcccaggagc agaccgccgc cctgacccgc cgcttcgcgc gacgacagga
     4081 gtcctggttc gcgccggacc cccgcatctg ctggatcgac gcgcagagcg acgaccgacg
     4141 tcaccacgcc caagccgtga tcgaggcggc catcagggac aatggtgacc atgactgacc
     4201 agatcgcctt caccaagggg cacggcaccg agaacgactt cgtgctcatc cccgaccttg
     4261 aaggcgcccg cgagctcacg gccgaggacg cggccacgct cgcggaccgt catgcggggg
     4321 tggggggcga cggcgtgatc cgagtggtcc agactgcggc ggccaccgag gctgcggtgc
     4381 tggaacaggc gtcccaggcg cggtggttca tggactaccg caacgccgac ggaagcatcg
     4441 ccgagatgtg cggcaacggc acgcgggtgt tcgcggccta cctgcgccgc gagggactgg
     4501 agacggctga cgagttcgcc atcgccaccc gggccggggt caaggtggtg cggttcgaga
     4561 gtcctgacct gatcgcggtc aacctcggtc cctggcgtct ggcgcagccg gtcattgccg
     4621 aggctgaagg cttcgatgcg ctggtgcacc tcgacggttt cgaaccgctc tccgccttga
     4681 gcctggacct cggcaacccg cataccgtcg tggcgctgcc tgagggcctg gacctggacc
     4741 tggtggacct tcatcgcccg ccggtggtca acccgtcacc cgctcacggc accaacgtcg
     4801 agctggtccg gccactgggc gccggccacg tccgcatgcg agtccacgaa cgcggggtcg
     4861 gtgagacccg gtcgtgcggc accggggccg cagcagcagc gctggccacc cggttctggg
     4921 cgggtgagcg cggggacacc tggaccgtcg acgtccctgg cggccggctg cgggtgcggg
     4981 cgttgcccgg tcacgaggtc gagctgactg gccccgcagt cctcgtcgcc gacggcacgg
     5041 ctcatctcgg ggtgcatccc acctaaatcg gtcataacgt cagggggatg agcaaccctc
     5101 gagtggccgt atgtgccgca accgccgcag gagccgtggt gttcgccctg agcgggcccg
     5161 ccgcggcgca ggccaccgtt catggctcga ttcagggctc gacagaccag ggacccgtgg
     5221 gctcccccct tcccaaggtg cccgagatgc gcggcggggg aggtgcggtg tcatcggtcg
     5281 acccggtggc cagccaggtg ggcatcaacg tcctcaaggc gggcggcaac gccgcggatg
     5341 ccgcggtggc caccgcagcg gcgctggggg tcaccgagcc gtactcgaca ggcatcggcg
     5401 ggggcgggtt cttcgtcttc tatgacgcca ggaccggccg ggtcaggacc atcgacggac
     5461 gcgagactgc accgaagacg tttaccgaga acgcgtttcg tgagtccgac ggcacgccga
     5521 tggacttcac caaggcggtg aactccggcc tgtccgtcgg cgtcccgggc actcccgcga
     5581 cctgggccct ggccgcgcgg tccttcggca cgatgcggtt ggccgagctg ctcaagcctg
     5641 ctgagacggt ggccaggcgc gggttcgtgg tggaccagac cttccacgac cagaccgtgg
     5701 ccaacgccaa ccggttctcg aagttccccg cgaccgccaa ggtcttcctg ccagggggca
     5761 gcgcgcccgc cgtcgggtcg gtcttccgga acccggacat ggcgactgcc taccgcgagc
     5821 tccgcacgca cggcattgcc tcgctgtatg ccggccggct gggtcgggcc gtggtcgccg
     5881 aggcgcgcaa ccctcacacg gccgccgggt tcacggttcc acacggccag atcacgaccg
     5941 gtgacctcgc ggcataccgg gcccttccca aagctccggt gcactcgacc tatcacgggc
     6001 tcgacgtcta cgggatgccc gtgcccagct caggtgggat cgcggtggcc gagatcctca
     6061 acctgctcga ggccatcaac cggcgcaccg ggaccccctt gagggcggtg accaatgccg
     6121 actacctgca ccggttcagc gaagcctctg cgctcgcctt cgccgaccgg aaccgttacg
     6181 tgggcgacgt tccgggcgtg ccggtgcacg agctcgtgtc ccaggggttc gcccgcgagc
     6241 gagcctgcct gttcgacccg gcaaccgcgc tcaagcgtcc ggtgcccttc gggagcccgg
     6301 acggtagcta cgcgacctgc ggccccacgg ccacgaccgc ccacctgccg aatgacgggc
     6361 agtccaccag ccatgtcgtg gtcacggacc ggtggggcaa cgcggtgtcc tacaccctga
     6421 ccatcgagca gaccggtggc tcggcgatca cggtgccggg atggggcttc ctgctcaaca
     6481 acgagctcac cgacttcgac ttcgccccgc tgtccaacgg cgtcccggac ccgaacctcc
     6541 ccggtcctgg caagcgaccg cgctcgtcga tgagcccgac ggtgatcctc gatcacggcc
     6601 agctgcgcct cgttgcgggc agtcctgggg gcgccaccat catcaccacg gtcgcccagg
     6661 tgctcaccga gtacctcgac cgtgggctcc cgctggtgga cgccatcgcc gcggccaggc
     6721 tctcctcgcg caacggggct gagcaggccg agccggccct gctcaactca ccagatgcgg
     6781 cggcgttgcg ggccaagggt cacgtgctgg tctcgacccc cgagatcgga gcggcgacgg
     6841 cgatccgggt catcggaccg aacgacttcg aggcggcggc agagaccgtg cgccgtggcg
     6901 gtggctcggc gatggtggtg gaccccgcga gcccttcgcc ctagtcggag gccctaccgc
     6961 ttccgccgga cctcgatcag ccggaaaccc ttgtcggtcg cgaaccgggt gacggagaac
     7021 gcgtcggtgt ccagctgctc gccgagccag cgttgcagcg agtccgaccc gaggttcctc
     7081 tgcacgacga gataggccac cccgccgggg gccaacctgg gcagccagtg ctggagcatc
     7141 gcgtgcagga ccgccttgcc cacccggatg ggcgggttgg accagatcgc gtcgaaccgg
     7201 acgtcatcgg gtatgccgtc gggctgggtc gcgacgacgt tcgcaagccc cagcgacgag
     7261 gcattggtgc gcgtgaggtc cagcgagcgc tcgttgacgt ccacggcata caccgtggcc
     7321 ccgggggagg tgagggccag ggtcagggcg atcggacccc acccgcagcc aaggtccaac
     7381 agcgtccccg acgggggagg ggcagggacc tcgcggagca gaaccgccgt gcccttgtcg
     7441 accgcatcag ggctgaaaac cccgcccgcg gtgcgtaccg acacctcgcg gccggcgagc
     7501 cgcacggtca tgacccgctg ctgcgctggg ctcgcaggct ccgcggtgaa gtagtggtcg
     7561 tggctgctca tcgggggtaa ccgtagacgg cttggcataa acgagtcgct atgacggttg
     7621 aaaaggtgag attcttgagg ggatatgaca ctgaagcgtt cagacatctt tgactccaaa
     7681 gcagcggccc tcgccgacga ggatggcttc ctcgcccacg acggggccgc tttcgatggc
     7741 gaccagtacg accgagagga ccgcgcggcg ctgcgtcgcg ttgccgggtt gtccaccgag
     7801 ctcgaggaca tcaccgaggt cgagtaccgc cagctgcgcc tcgagcgcgt ggtgctggcc
     7861 gcggtatgga ccgaggggac ggctcaagac gccgacaact ccatgcgtga gctggcagcc
     7921 ctggcggaga ccgcgggttc caccgtgctc gccggtctgg tccagcgtcg ccagaagccg
     7981 gacaccggca cctatctcgg ctcgggcaag gcggaggagc tgcgcgacat cgtcatctcc
     8041 gagggcgcgg acaccgtcat ctgcgacacc
//
LOCUS       DASYFY010000513         3475 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_929517, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000513 DASYFY010000000
VERSION     DASYFY010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3475
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_929517"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            375..1022
                     /locus_tag="VGN19_10405"
     CDS             375..1022
                     /locus_tag="VGN19_10405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196343.1"
                     /translation="MRKTYVIAAASAAPLVLALAGASGSQAVAATQPIHDSSAFTTML
                     TPVPTNHVHASGTASVRLDGDTAWVTVKVKGLIMAPHAMHIHYKGEGECPQADDATKH
                     NGHLAMSTTDGLDDYGPIGTSLTTRGDTSPASALAISRFPNVGTYTYTRSIKLTHDVA
                     MAVRHNNAVIVVHGIDYNHNNKYDNVLGVSDLTATLPMEATAPAICGALTKAGDR"
     gene            complement(1237..1310)
                     /locus_tag="VGN19_10410"
     tRNA            complement(1237..1310)
                     /locus_tag="VGN19_10410"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1274..1276),aa:Ile,seq:cat)
     gene            1454..1795
                     /locus_tag="VGN19_10415"
     CDS             1454..1795
                     /locus_tag="VGN19_10415"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-phenylpropionate/cinnamic acid
                     dioxygenase ferredoxin subunit"
                     /protein_id="HEV7196344.1"
                     /translation="MSDGIRVAAVDDVEPGEALVLDTAVTATPEPISLFRDDDGTYYA
                     LDDTCSHEDASLAEGWIEAGEVECPLHATRFCLRDGKPMCLPATKPVRTHRVETRDGE
                     VYLFPGVAASA"
     gene            1990..2505
                     /locus_tag="VGN19_10420"
     CDS             1990..2505
                     /locus_tag="VGN19_10420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3145 domain-containing protein"
                     /protein_id="HEV7196345.1"
                     /translation="MAVAMSRTQTGGVLFVHGTPAALCPHITWAIEAVLDQRVTLDWI
                     PQPAAPRMMRTELTWTGAPGTGAELASALRGWDGLRYEVTEDPSPGCDGARWSYTPRL
                     GIHHAMTSASGDAVVQEDRLREAIMRTRGDSDALQDEIDLLLGVPWDEELEVFRYAGD
                     GASVRWLHKVG"
     gene            2656..3444
                     /locus_tag="VGN19_10425"
     CDS             2656..3444
                     /locus_tag="VGN19_10425"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEV7196346.1"
                     /translation="MSTRRGLFVAPFDALADPRLLADLAVRAENSGWDGFFVWDHLRY
                     GDRVSEIADVWTCCAAIAMRTETMLLGPMVTPLARRRPQVLARQAASLAVLSSGRFVL
                     GLGLGDDWVGEFTTFGDQPDPRVRAAMLDEGLHLLTGLLSGGHVDHRGAYYTARDVQF
                     QPAAAVPIWLAGRFGNRAPLRRAASYDGFFVIDVEQPDDLARVTSDLASHSPAAGFDL
                     VVDIRPSQDPAPWIDHGASWVLTRLGPFDLDVAQVRAIIEAGPG"
BASE COUNT          580 a         1217 c         1124 g          554 t
ORIGIN      
        1 cacgcccgag cattgtcggc ataacccaaa catcggcata agcaattaac ggacgcttgg
       61 aacacctccg cggatccgcc ctcggcttcc gcaacctcac caactacatc gcccgatcac
      121 tcctggagac aggcggattc agaccacgac tacaccctgg attgtgaaga gcctgattag
      181 acagccaaaa ttggctgcag ggggtcgcgg ttctcttctg aggcgacttg tgcgattcgg
      241 ccttattagg tctttagggc gtagcgtgcg ctatttggcg cggctcaaca agcgatgtcg
      301 tggagagtgt gtgtgcatct ctttggctct cgctcgacct cccggattcc caaaaaaccc
      361 ttcaagggag agaaatgcgc aaaacatacg tgattgccgc cgccagtgct gcccctctgg
      421 ttctggccct cgctggtgcc tccgggagcc aggccgtcgc ggccacccag cccattcacg
      481 actcctccgc attcacgacg atgctgacgc cggtccccac caaccacgtg catgccagtg
      541 ggaccgcttc cgtccgtctc gacggcgaca ccgcgtgggt cacggtcaag gtcaagggcc
      601 tgatcatggc cccgcatgcc atgcatatcc actacaaggg cgaaggcgaa tgtccgcagg
      661 ccgacgacgc caccaagcac aacggacacc tggccatgag caccaccgac ggcctcgacg
      721 actacgggcc gatcggtacc tcgctgacca cccgaggcga caccagcccc gccagcgccc
      781 tggccatctc ccgcttcccg aacgtcggca cctacaccta cacccgcagc atcaagttga
      841 cccacgatgt cgccatggcg gtccggcaca acaacgccgt catcgttgtc cacggcatcg
      901 actacaacca caacaacaag tatgacaacg tgctcggcgt cagcgacctg accgccaccc
      961 tgccaatgga agccaccgcc cccgcgatct gcggcgccct caccaaggcc ggcgaccgct
     1021 gaaccgcatg cacgattgac tgaccaaggc cgatcccggg gatctcgttc tgacgggtcc
     1081 ccgggattcc acctggaccc gcgaggacga ggacagggtg catttgcgtg gcccgtcgag
     1141 gagtgttgaa gcaatccgct atcgcaactt cgcgtccgcc tgcgcgaaag acgtcgacgc
     1201 gtttcttgag gggtcgttcg cgcgcagaaa cggaagtggg gcagcagggg cttgaaccct
     1261 ggaccgacgg attatgagtc cgctgctctg accggctgag ctactgcccc gggaccgtcg
     1321 cgacccgtgc gggccgtcga ggtcgatcga agtctagcga gcggccgtcg atggtcggga
     1381 ggcggttccg gcggtcgcca cgcgacactc taggctcgcc ctgtcccagg cccccgcacg
     1441 tgaggaacag gaaatgagtg acggcatccg cgtggcagcg gtcgacgacg tggagcccgg
     1501 cgaggcgctc gtgctcgaca cggcggtcac cgcgacgccc gagccgatct cgctcttccg
     1561 cgacgacgac ggcacgtact acgccctcga cgacacgtgc tcgcacgagg acgcctccct
     1621 cgcggaaggt tggatcgagg cgggcgaggt ggagtgcccg ctgcacgcga cgcggttctg
     1681 cctgcgcgac ggcaagccga tgtgcctgcc cgccaccaag ccggttcgga cccatcgggt
     1741 cgagacccgt gacggcgagg tctacctctt ccctggggtc gctgcgagcg cctgacgtgc
     1801 caccacctcg gcggtgggac gaaagaggac atatcggcaa ctgagattgc tggtgcccct
     1861 gtgccccatg gtgcacaatg ggcgagtgct cgatggcgag cacgctccac ccgcagcacc
     1921 gagacagttt gccgcatcac gaagtagcag gcgttgggga agacgtccct gcaacttcag
     1981 gaggttcgga tggctgtcgc gatgtcgcgc acccagacag gcggggttct gttcgtacac
     2041 ggaaccccgg ccgcgctgtg cccgcacatc acgtgggcga tcgaggccgt ccttgaccag
     2101 cgggtgaccc tcgactggat ccctcagccg gctgcgccca ggatgatgcg caccgagctg
     2161 acctggaccg gcgcccccgg cacgggcgcc gagctggcca gtgccctgcg cggctgggac
     2221 gggctgcgct acgaggtgac cgaggacccc tcgccgggct gcgacggggc acgctggtcc
     2281 tacacgcccc gcctcggcat ccaccacgcc atgacgtccg cctccggtga cgccgtcgtg
     2341 caggaggacc gccttcgcga ggcgatcatg cgcacgcggg gcgactccga cgcgctccag
     2401 gacgagatcg acctgctgct cggcgtcccg tgggacgagg agctcgaggt gttccgctac
     2461 gccggagacg gtgcttccgt gaggtggctg cacaaggtcg gctgaccacc cagcgctcgt
     2521 ccgccccgcc ctccagcgtg gcgagcggga cgtgacgagg gcccgggcgg ttcgtgcgcc
     2581 cgggccctct cgcggcgacc tcgtccggcg gcagcgagga ctcctcacgg ggccgaggat
     2641 cggcatgatc ggggcatgag tacacgccgc gggctcttcg tcgccccctt cgacgccctt
     2701 gccgaccctc gactcctcgc agacctcgcc gtcagggccg agaactcggg ctgggacggc
     2761 ttcttcgtct gggaccacct gaggtacggc gaccgggtct ccgagatcgc cgacgtgtgg
     2821 acgtgttgcg cagccatcgc gatgcgaacg gagacgatgc tgctcggccc gatggtgacc
     2881 ccgctggcgc gacgccgacc gcaggtgctg gcccggcagg ctgcgagcct ggcggtgctc
     2941 tcgagtggtc ggttcgtgct cgggctgggg ctcggcgacg actgggtggg cgagttcacg
     3001 accttcggtg accagccgga cccgcgggtg cgcgctgcca tgctcgacga ggggctgcac
     3061 ctcctgaccg gcttgctgtc gggtggtcac gtcgatcacc ggggcgccta ctacaccgct
     3121 cgcgacgtgc agttccagcc cgcggccgcg gtgcccatct ggctggccgg acgattcggc
     3181 aaccgggcgc cactgcgtcg agctgcgagc tacgacgggt tcttcgtcat cgacgtggaa
     3241 cagcccgacg atctcgcccg ggtgacgtca gacctcgcgt cccactctcc cgccgcaggt
     3301 ttcgacctcg tggtggacat ccgcccctcg caggatccag ctccgtggat cgaccacggt
     3361 gcgtcctggg tcctgacccg cctgggaccg ttcgacctcg acgtggcgca ggttcgcgcg
     3421 atcatcgagg cgggacccgg ctgaagcctg cccaaccccg ccgtaccgag gtgac
//
LOCUS       DASYFY010000514         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1560972, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000514 DASYFY010000000
VERSION     DASYFY010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1560972"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VGN19_10430"
     CDS             <1..612
                     /locus_tag="VGN19_10430"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEV7196347.1"
                     /translation="KPPSSWPQASKSIFELMNTAAPGSAMEWAEGSVGNCYTGGAGLF
                     TVTHTPFPYYTRTQKSLCPQYAKPFPSNSADVLSAKFNLVIPNKQDIMHLVPNSTISQ
                     RIQNGDNWLKGYLPALLTSATYQAGRSAIIITWDEGNGSTFTVPLIVITPYTTAGGVS
                     SVAVDHYSVLKGMEQMVGQTQLLGHAGDPGKSSIRDDTLFRLK"
     gene            complement(661..1881)
                     /locus_tag="VGN19_10435"
     CDS             complement(661..1881)
                     /locus_tag="VGN19_10435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEV7196348.1"
                     /translation="MTSADAVLAGLDRTRGWREDFYRDLHAHPELSGQESRTSTAAAE
                     RLTAWGFEVQRLGGGVVGVLANGPGDTVLSRADMDALPVTELTRLPYASTQTSTDVTG
                     ATTGVSHACGHDVHVTCLLGAAELLADQRQHWSGTFIALFQPAEETAAGARGMLEDGL
                     AQRIPRPDVAFAQHVLGLDAGTIGTQAGPVMSAGDSIRITVFGKGSHGSMPHLSVDPV
                     VLAASIVLRLQTIVARETKPGEFAVVTVGSSVAGTKSNIIPDRAVLLLNVRTYDDDVR
                     RHVLDAIERIVRAECDGAGSPQPPTFEYYDQYPLTHNDADVGDRVGSAFREHFGDQVV
                     ELGRVTASEDFSRIPDAFETPYFYWGVGGFASGTAAPPNHSPFFAPLIQPTLDRGTEA
                     LVVAALAYLAKDPR"
     gene            2072..>2620
                     /locus_tag="VGN19_10440"
     CDS             2072..>2620
                     /locus_tag="VGN19_10440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015771851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HEV7196349.1"
                     /translation="MTAGSALLLLDLAGTTVFALNGALTAIRRARLDIVGVLTLGMIT
                     AVGGGIIRDVIIGFLPPATFRDWRYLVVAAAGALVAFVWGRKLDRLALPIEVLDAVGL
                     SLFAITGATKALDAGLGPLQAVILGAVTAVGGGTLRDVLIGRVPTVLSSGLYAIPALV
                     GSLITVVGIEIGLHGWVPTLAAG"
BASE COUNT          388 a          907 c          899 g          426 t
ORIGIN      
        1 aagccgccga gctcctggcc ccaagcctcg aagagcatct tcgagctgat gaacaccgcg
       61 gcgccgggca gcgcgatgga gtgggcggag ggcagcgtgg gcaactgcta caccgggggc
      121 gccggcctgt tcacggtcac ccacaccccc ttcccgtact acacgcggac ccagaagagt
      181 ctgtgtccgc agtacgccaa gccgttcccc tcgaacagcg cggacgtgtt gtcggcgaag
      241 ttcaacctcg tgatcccgaa caagcaggac atcatgcacc tggtgcccaa cagcaccatc
      301 tcgcaacgca tccagaacgg cgacaactgg ctgaagggct acctcccggc tctgctgacc
      361 tccgcgacgt accaggccgg ccgctccgcc atcatcatca cctgggacga gggcaacggc
      421 agcacgttca ccgtgccgct gatcgtgatc accccgtaca ccactgccgg tggcgtctcc
      481 tcggtcgccg tcgaccacta ctcggtgctc aagggcatgg agcagatggt cggtcagacc
      541 cagctcctgg gccacgccgg tgacccgggc aagtcctcca tccgcgacga cacgctcttc
      601 cgcctgaagt agaccccatt caggttccgc ggctgactgt tgtgcggcaa cgcaccccgg
      661 tcaacggggg tccttggcga ggtaggcgag tgcggccacg acgagcgcct cagtacccct
      721 gtcgagggtc ggctggatga ggggcgcgaa gaagggtgag tggttgggtg gcgctgcggt
      781 gcccgaggcg aatcctccga cgccccaata gaagtagggt gtttcgaacg cgtcggggat
      841 gcggctgaag tcctcgctgg ccgtgacccg gcccagctcg accacctggt cgccgaagtg
      901 ctcgcggaac gcgctgccga ctcggtcacc cacgtcggcg tcgttgtgag tgagggggta
      961 ctggtcgtag tactcgaagg tgggcggttg cggggacccg gcgccgtcgc actccgcgcg
     1021 gacgatgcgt tcgatggcgt ccagcacgtg gcgacgtacg tcgtcgtcgt aggtccgcac
     1081 gttgagcagc agcacggccc ggtccgggat gatgttgctc ttcgtcccgg ccacgctgct
     1141 gcccaccgtg acgaccgcga actctcccgg tttcgtctcg cgggccacga tcgtctgcag
     1201 ccgcaggacg atggaggcgg cgagcacgac cgggtcgacg ctcaggtgcg gcatcgagcc
     1261 gtgtgagccc ttgccgaaga ccgtgatccg gatgctgtcg ccggcggaca tcacaggccc
     1321 ggcctgggtg ccgatcgtgc cggcgtcgag cccgaggacg tgctgggcga aggcgacgtc
     1381 aggacgcggt atgcgttgtg ccagtccgtc ctcgagcatc ccgcgcgctc ccgccgccgt
     1441 ctcctcggcc ggctggaaca gcgcgatgaa ggtcccgctc cagtgctgac gctggtcggc
     1501 gagcagctcc gcggccccga gcaggcacgt cacatggacg tcgtggccgc aggcgtggga
     1561 cacgccggtg gtggcgcccg tcacgtcggt tgaggtctgc gtcgacgcat acggcagccg
     1621 ggtcagctcg gtcacgggca gggcgtccat gtcggcacgg ctcagcaccg tgtcgccagg
     1681 cccgttcgcc agaacgccga cgacaccgcc acccagacgc tggacctcga agccccacgc
     1741 ggtcagtcgc tcggcggctg ccgtggaggt gcgggactcc tggccgctca gctcggggtg
     1801 ggcgtgcagg tcgcggtaga agtcctctcg ccagccgcgt gtgcggtcca gcccggccag
     1861 caccgcgtca gcagatgtca tcgcctcgcc cctcgtggaa tccaccagtc ctgttcgacc
     1921 ggcgagttga ccgtacccag ccgcgctgtg acgaagccct gagtgaggcc gtccggacgc
     1981 cacccagggc tgtcacggcg acgggcccct ggcgcacgcc ttcggcgtac cgtgtccgca
     2041 tggcaagcgc ggttgtccgg tgggagcccg agtgactgcc gggagcgcac tgttgctgct
     2101 cgacctcgca ggaaccacgg tcttcgcgct caacggcgcg ctgacggcga tccgacgggc
     2161 tcggctggac atcgttgggg tgctcaccct cggcatgatc acggccgtcg gcggcggcat
     2221 catccgcgat gtcatcatcg gcttcctccc accggcgacc ttcagggact ggcgctacct
     2281 cgtggtcgct gcggccggtg ccctcgtggc cttcgtgtgg gggcgcaagc tcgaccggct
     2341 ggcgctgccg atcgaggtcc tcgacgccgt gggcctcagc ctgtttgcca tcaccggagc
     2401 caccaaggcg ctcgatgccg gcctggggcc gctccaggcc gtcatcctgg gcgccgtcac
     2461 cgctgtcggc gggggcactc ttcgggacgt gctgatcgga cgcgtcccga cagtgctgag
     2521 cagcggcttg tatgccatcc ccgcgttggt cggttccctg atcaccgtgg tgggcatcga
     2581 gatcggcctc cacggctggg tcccgacatt ggcggccggg
//
LOCUS       DASYFY010000515         6153 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1245958, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000515 DASYFY010000000
VERSION     DASYFY010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6153
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1245958"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VGN19_10445"
     CDS             complement(<1..1038)
                     /locus_tag="VGN19_10445"
                     /inference="COORDINATES: protein motif:HMM:NF012970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196350.1"
                     /translation="MATSRSRVRRRRVVALVLLVLVVVGLVGAVRVLQPLPELSMKPT
                     ERLVARTAGQPPALPWPSRGQSALVVLGAGTAGVHGSRGSIPIGSVAKVATALVVLND
                     HPLTGNAPGPTLTVSAADEREYAAALGTGDSMVPVVAGERITERQALEALMIPSADNI
                     ADLLARWDAGSTPAFVAKMNRLAVQLGARQTHYADASGLNSATTSTAVDQIRLGERAL
                     KEPALAAIMSERSTTLPVAGRVTNYNALLGSDGVVGIKTGSTTAAGGNLLFAAKTQVG
                     GHPVTVVGAVFGQAVGMRPLSALNVAVDSSRVLLRSAVGAMRPALVVRPGQPVSTGVT
                     AWGGSTTARTRA"
     gene            1103..1756
                     /locus_tag="VGN19_10450"
     CDS             1103..1756
                     /locus_tag="VGN19_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7196351.1"
                     /translation="MPDITPSAGGVRVERVVTTGTLTTPGGEVTLENNTWIVGDDRQC
                     VVIDAGHDGRAIVKAIARGRTVLGVLVTHGHFDHLDAVGEVCDGTRAPAYLHPADRFL
                     WDEYYPVTPDRDLVDGGSITVGDVTLEVLHTPGHTPGSCCLYAPALGVVFSGDTLFPG
                     GPGATRHDYSDFDTIIESVRTRLFTLPEDTVVLPGHGDATLVGTESPKLQEWVDRGW"
     gene            complement(1763..2011)
                     /locus_tag="VGN19_10455"
     CDS             complement(1763..2011)
                     /locus_tag="VGN19_10455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2630 family protein"
                     /protein_id="HEV7196352.1"
                     /translation="MANDTDIQQRIRDLIDEEHGLRSSLATGEISVEEENQRLRHVEV
                     ELDQCWDLLRQRRARREFGENPDGAQVRDAPTVEGYTG"
     gene            2070..4031
                     /locus_tag="VGN19_10460"
     CDS             2070..4031
                     /locus_tag="VGN19_10460"
                     /inference="COORDINATES: protein motif:HMM:NF015948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HEV7196353.1"
                     /translation="MAPPGVRSRESLACVVVRGGGVAGLADALRRLAVPLTGPAVVVA
                     RLSQPTPASAEVVHEVVDLLVEGGCLEVSVGSSLRAYDRDRGHRSVHALAQQAGMRGR
                     TDRGRAYDLVDLGADSMDAPVPETAVLHGRPVSSAWAGAGTRVVVARAVTDLVDGYAG
                     CLATLLGAAHEVAGAESADVVVDLLTYLPPTLVVVDALRPSVGADGARLPDPLESGIL
                     LVGSDALAADTAIAALLGQDRSNSRLTQRAVERLGSPGGIVDGELSALQGAHGAHPLA
                     RAAARQVAADPRWERVLSAVIGGPDPGAEVADPVLATIRGLVTPLVASAEDAVGQSGL
                     TALLGTAAALQLSTHAWSTGFDKGAVTRREAPLGFDPGDFSGEDYDTLPDFFDPFDAL
                     LDGLPANADGMRWRLVDGATVFEMARDVAADFDEFVARVDVGAGISLMADYLGGRRVT
                     VPAGDDPLTTGRTRQAERNLYLPQPNYLALWGGQPIDVCKIELVERQPDRHRLTWRTI
                     NSPNGSATYDDGSLTFTRVGGGVDADTRVVVRGRQLFSLPPAWAGVDLAAIPEVRNPL
                     LEEAYRRFFTTTFDNLEACFEGRAFRIGRPPYDPVEPLLTHSADLLLGLAKDWLGGRA
                     RTAHPSAVDADADAETVDAQGFRHVPGSR"
     gene            4028..5173
                     /locus_tag="VGN19_10465"
     CDS             4028..5173
                     /locus_tag="VGN19_10465"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7196354.1"
                     /translation="MRIAVTGATGLVGHQVARAALEAAHEVRAITRDGSRDRALRIGD
                     HQVERVMAALTDRAALATALAGCDALVHCAAVYAFGAARAEEVTQVNADGTRTVLEAA
                     ADAGVQQAVVTSSSVTCGSSSTPRARSETDHLGAEPVPAYYASKLAQEEVALETGQRR
                     GIRVVLALPTVILGGPFARLAPSNAIVLRYLLDPTRSTYPGGCNVVDARDVGAGHLTL
                     LEKGVPGERYLLGGDDLSWRMLHSLVADLAGLPGPFAEMPAGSAWAASAAAELWARVM
                     GTEPLSTRDEAQTVGRYYWYTSAKAQRLGYAARSTRAAVASSLAWLAISPDLPRWARE
                     GLRLHPEVRAARQLLAGPLPGELPAPVPAPVRTRPPRSRPGSPRRPH"
     gene            complement(5121..5903)
                     /locus_tag="VGN19_10470"
     CDS             complement(5121..5903)
                     /locus_tag="VGN19_10470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196355.1"
                     /translation="MIEHTSASDETLTRVTELARQALQAQASLARQSLELGRATLAGD
                     VDRTTAGRAYLDAVTREGTRYWREVGVLGLDYAGDLMALGSRTAARIISETSAAGARS
                     GGRRESSQRRSSTVDDASEGGPPGSADGVSIQSTTDSTAGAGATPTDQYTGARRVAVT
                     LRGARGETARALVTVANKHPRIRRVVLRPSELRDLGGTAVAVALTVDPDQVTIPAGGE
                     QQVQLEAELVADLVQPGERYVGTVEVSGGDEATLDVTVEVAS"
     gene            5892..>6153
                     /locus_tag="VGN19_10475"
     CDS             5892..>6153
                     /locus_tag="VGN19_10475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196356.1"
                     /translation="MFDHRSTSSTAAAAIAAGVHWIAVRGADDHRDAKRATAALEAHI
                     GVRAGALVDIDGAATQGRGGIRAWGGPVVLRWFSGVSRASRVS"
BASE COUNT          864 a         2229 c         2131 g          929 t
ORIGIN      
        1 tgccctggtc cgcgctgtcg tcgacccacc ccaggccgtg accccagtcg agacaggctg
       61 acccgggcga accaccaacg ccgggcgcat ggcccccacc gccgaccgca gcagcacgcg
      121 cgaggagtcc actgcaacat tcaacgccga gaggggccgc ataccgacgg cttgtccgaa
      181 caccgcacca accaccgtga ccggatgacc acccacctgg gttttcgctg cgaagagcaa
      241 gttgccgccg gccgcggtcg tggaaccggt cttgatgccc acgaccccat ccgaaccgag
      301 caacgcgttg tagttcgtca cccgtcctgc caccggcagg gtcgtggatc gctcgctcat
      361 gatcgccgcg agtgcgggtt ccttgagcgc gcgttcgccg aggcggatct ggtcgaccgc
      421 cgtgctcgtg gtggcgctgt tcaggccact ggcgtccgcg tagtgcgtct gccgggcacc
      481 cagctggacg gcgagccggt tcatcttcgc cacgaacgca ggggtgctcc ccgcatccca
      541 tcgcgcgagc aggtcagcga tgttgtcggc cgacggaatc atcagtgctt ccagggcctg
      601 acgctcggtg atccgctccc ccgccaccac cggcaccatc gagtcgcccg tgccgagcgc
      661 cgcggcatac tcccgttcgt cggcagcgga cacggtcaag gtcggcccag gggcgttgcc
      721 ggtcaagggg tggtcgttca gcacgacgag tgccgtcgcc accttggcca cgcttccgat
      781 ggggatcgaa ccccgcgaac cgtggacccc ggcggtaccg gcccccaaca ccacgagggc
      841 cgactgcccc cggctcggcc acggcagcgc cggcggctgc cccgccgttc tggcgacgag
      901 ccgctcggtg ggcttcatgc tgagctcggg aagcggctgc agaacgcgga cggcccccac
      961 gagccctacc accacgagga ccaggaggac gagggcaacc acccggcgtc gccgcacacg
     1021 ggagcgggag gttgccaccg ggacatcgta ggtgcgccga ggcgaatggc cagggaggcg
     1081 agcactacga aaggatgggc gcatgccgga tatcacccct tccgctggcg gtgtgcgcgt
     1141 cgagcgagtc gtcacgacgg gcaccctgac cacgccgggt ggcgaagtga ccctcgagaa
     1201 caacacctgg atcgtgggcg acgaccggca gtgtgtagtc atcgacgccg ggcacgacgg
     1261 ccgagccatc gtcaaggcca tcgcgcgcgg gcgcactgtg ctcggggtcc tggtcaccca
     1321 tggtcatttc gaccatctgg acgcggtcgg tgaggtgtgc gacggaacgc gcgccccggc
     1381 ttacctgcat cccgcggacc ggttcctctg ggatgagtac taccccgtga ccccggatcg
     1441 cgacctggtc gacggaggca gcatcaccgt cggcgacgtg acgctggagg tgcttcacac
     1501 tcctggccac accccgggct cctgctgtct gtacgccccg gcgctgggcg tggtcttcag
     1561 cggcgacacg ctgtttcccg gtggacctgg ggctacccgc cacgactaca gcgacttcga
     1621 caccattatc gagtccgtgc gcacccggct gttcaccctc ccggaggaca ccgtggtgct
     1681 gcccggccac ggtgacgcca cgctcgtggg cactgagtcg cccaagctcc aggagtgggt
     1741 cgaccgcggc tggtgaacca gctcagccgg tgtagccctc gacggtgggg gcgtcacgaa
     1801 cctgcgcgcc gtccgggttc tcgccgaact cgcgacgagc ccggcgctgt cgcagcaggt
     1861 cccaacactg gtcgagctcg acctcgacat ggcgaagccg ctggttctcc tcctcgacgc
     1921 tgatctctcc cgtcgccaga ctcgagcgca gcccgtgctc ttcgtcgatc agatccctga
     1981 tgcgctgctg gatgtcggtg tcgttggcca tcaacccact atcgcatcag gccctaccgc
     2041 tcgcgagggg tcgctggttt cattgacggg tggccccacc gggcgtccgg agcagggagt
     2101 cgctggcctg cgtcgtggtc agaggcggtg gggtcgcggg cctggccgac gcgttgcgtc
     2161 gcctcgccgt ccccctgacc ggcccggcgg tggtcgtcgc ccggctctcc caacccactc
     2221 cggccagcgc ggaggtggtt cacgaggtgg tcgacctgct cgtcgagggc ggctgtctcg
     2281 aggtgtcggt cggcagttcc ctgagggcgt acgaccgcga ccgtggacat cgatcggtgc
     2341 acgccctggc ccagcaggca ggcatgcgcg ggcgcacgga ccgcggtcgc gcgtatgacc
     2401 tcgttgacct cggcgccgat tcgatggacg cgccggtccc ggagacggcc gtcctgcacg
     2461 gacgcccggt gtcgtccgcc tgggcggggg caggcacccg agtggtggtg gcccgcgcgg
     2521 tcaccgacct ggtcgacggg tatgccgggt gcctcgcgac gctgctaggc gccgcccacg
     2581 aggtggctgg ggctgagagc gccgacgtgg tggtggacct gctgacgtat ctgcctccca
     2641 cgctcgttgt ggtcgacgcg ctgcggccca gcgtcggggc ggacggagcc cgcctgccag
     2701 acccgttgga gagcggcatc ctgttggtgg gctcggacgc cctggcggcc gatacagcca
     2761 tcgctgcgct gctcggccag gatcgctcga actcccggct cacccagcga gcggtcgagc
     2821 gcctgggctc cccgggcggc atcgtcgacg gcgaactatc cgcgctgcag ggagcgcacg
     2881 gcgctcatcc gctggcgcgg gctgcggctc gtcaggtggc ggccgaccct cgctgggagc
     2941 gcgtgctcag cgccgtgatc ggcggcccgg acccaggcgc tgaggttgcc gatccggtat
     3001 tggcgaccat ccgtggcctg gtcacgcccc tcgtggcatc cgccgaggac gcggttgggc
     3061 aaagcgggct caccgcgctg cttgggactg cggccgcgct gcagctgagt acacacgcct
     3121 ggtccacggg gttcgacaaa ggtgcggtga cccgccgcga ggcgccgctg ggtttcgacc
     3181 ccggggattt ctcgggtgag gactacgaca cgctccccga cttcttcgac ccgttcgacg
     3241 cgttgctgga cggcctgccc gcgaatgccg acggaatgcg ctggcggctt gtcgacggcg
     3301 ccactgtgtt cgaaatggct cgtgacgttg ccgccgactt cgacgagttc gtggcgcgcg
     3361 tcgacgtcgg cgcagggatc agcctgatgg cggactatct cggcggccga cgggtcacag
     3421 tgcccgccgg tgacgacccc ctcacgaccg gccgcaccag gcaagcggag cgaaacctct
     3481 accttccgca gccgaactac ctcgccttgt ggggtggcca gcctatcgac gtctgcaaga
     3541 tcgagctcgt cgaacggcag cctgaccggc accggctcac ctggcgaacg atcaacagcc
     3601 ccaacggctc tgcgacctat gacgacggca gcttgacctt cacccgggtt ggaggtgggg
     3661 tcgatgccga cacccgggtt gtcgtgcgcg gtcgacagct gttcagcctt cccccggctt
     3721 gggctggcgt ggacctggcc gccatccccg aggtacgcaa cccgttgttg gaggaggcgt
     3781 accggcgctt cttcaccacg actttcgaca acctcgaggc gtgcttcgag ggacgcgcgt
     3841 tccgcatcgg gcgaccgccg tacgaccccg tcgaacccct gctgacccac tcggccgacc
     3901 tcctgctggg cttggccaag gactggctcg gcggccgggc gaggacagct cacccgagcg
     3961 cggtcgacgc cgacgcggac gccgagaccg tcgacgccca gggcttccgg cacgtcccgg
     4021 gctcgcggtg aggatcgccg tcaccggagc gacgggtctt gtcgggcatc aggttgcccg
     4081 ggccgccctg gaggcggccc acgaggtgcg ggcgatcacg cgcgacggct cgcgggaccg
     4141 agcgcttcgg atcggcgacc accaggtcga gcgggtcatg gcggcgctga ccgaccgcgc
     4201 cgctctggcg accgcgctcg ccggatgcga tgcgctcgtg cactgtgcgg cggtctatgc
     4261 cttcggtgca gcgcgcgccg aggaggtgac ccaggtcaac gccgacggca cccggaccgt
     4321 gctggaggcc gccgccgatg cgggcgtcca gcaggccgtc gtcacctcct cctccgtcac
     4381 gtgcgggtcg agcagcacgc cacgagcccg cagcgagacc gaccacctcg gcgccgagcc
     4441 cgtcccggcg tactacgcca gcaagctggc ccaggaggag gtggcgctgg agaccgggca
     4501 gcgccgcggc atacgcgtgg tccttgcctt gccgaccgtc atcctgggcg gcccgttcgc
     4561 ccgacttgcc cccagcaacg ccatcgtcct gcgctacctg ctcgacccca cgcggagcac
     4621 ctacccaggg gggtgcaacg tcgtggatgc ccgcgatgtc ggcgcggggc acctcaccct
     4681 gctcgagaag ggcgttcccg gcgagcgtta cctgctcggc ggcgacgacc tctcgtggcg
     4741 catgctgcat agcctcgtgg ccgatctcgc cgggcttccc ggaccgttcg ccgagatgcc
     4801 cgccgggagc gcatgggccg cctcagccgc cgctgagctc tgggcgcgcg tcatgggaac
     4861 cgagccgctc tccacccgcg acgaggcgca gacggtcggt cgctactact ggtacacgtc
     4921 ggccaaagcc caacggctgg ggtatgccgc gcggtcgacc cgcgcggcag tggcctcgtc
     4981 gctggcgtgg ctggcgatca gccccgacct gcccaggtgg gcgcgcgaag ggttgcggct
     5041 gcaccccgag gtgcgggcgg ctcgacagct cctcgccggg ccgttgcccg gcgagctgcc
     5101 ggcacccgtg cccgcgccgg tcaggacgcg acctccacgg tcacgtccag ggtcgcctcg
     5161 tcgcccccac tgacctcgac cgtccccacg taccgctcgc cgggttgcac caggtctgcc
     5221 acaagctcgg cctccagctg gacctgctgc tcgccgcccg cagggatggt tacctggtcg
     5281 ggatcgaccg tgagcgcgac cgcgactgcg gtaccgccga ggtcacgcag ctcgctcgga
     5341 cgcagcacga cccgtcggat gcgcggatgc ttgttggcca cagtcaccag agcgcgggca
     5401 gtctctcccc gagcgccgcg cagcgtcacc gcgacccggc gagcgccggt gtactgatcc
     5461 gtcggcgttg ctcccgcccc agccgtggaa tcagtcgtgg actgaatcga caccccgtca
     5521 gccgagccag gtgggcctcc ctccgaggcg tcgtcgaccg tcgagctccg ccgttggctc
     5581 gactcgcggc gtccaccgga ccgcgcgccg gccgcggacg tctcgctgat gatccgagcc
     5641 gcggttcgac tccccaaggc catgagatct ccggcgtagt cgaggccgag gaccccgacc
     5701 tcgcgccagt agcgcgtccc ctcacgcgtc accgcgtcga ggtacgcccg gccagcggta
     5761 gtccggtcca cgtcaccggc gagggtggcg cgaccgagct ccagcgactg gcgcgcgagg
     5821 ctggcctgcg cctgcagggc ttgacgcgcc agctcggtga cccgggtcaa cgtctcgtcc
     5881 gaggctgagg tgtgttcgat catcggtcca cctcctcaac agcagcagcc gcaatcgcag
     5941 caggcgtcca ctggatcgca gtccgcgggg ctgatgacca ccgcgacgcg aagcgggcga
     6001 ctgcagccct cgaagcgcac atcggcgtac gcgctggtgc actcgtcgac atcgacggtg
     6061 cggcgaccca gggtcgcggc ggcatccggg cctggggtgg cccggtcgtt cttcggtggt
     6121 tcagcggggt cagccgggct agccgggtca gcc
//
LOCUS       DASYFY010000516         1993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1718502, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000516 DASYFY010000000
VERSION     DASYFY010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1718502"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VGN19_10480"
     CDS             <1..472
                     /locus_tag="VGN19_10480"
                     /inference="COORDINATES: protein motif:HMM:NF024122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HEV7196357.1"
                     /translation="ASQELAEILAHVMALDGALGSGLSEVVDGVYTGRPVGLFVYRGG
                     KAEAIRELAEREGFDLSASYAYSDSESDLPMLEAVGHPVAVNPDLTLGRIARERGWDV
                     LRFDRLGRRLKTAVALGAAAGAGGIGTVVALRRLRPPRRVRRLAGAAQRPSVGA"
     gene            484..816
                     /locus_tag="VGN19_10485"
     CDS             484..816
                     /locus_tag="VGN19_10485"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEV7196358.1"
                     /translation="MLTRRLRLLLLLTALVVAVSAVSAFASSGKTVRVGDNYYGPKTI
                     RVGRGTKVTWNWVGVLKHNVVVHQGPSAFSSKTQVRGSYSHTFTKKGTYQLVCTIHPS
                     MKMIVVVK"
     gene            864..1268
                     /locus_tag="VGN19_10490"
     CDS             864..1268
                     /locus_tag="VGN19_10490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HEV7196359.1"
                     /translation="MSSSDKKIRVVVAKPGLDGHDRGAKIIARALRDAGMEVIYTGLH
                     QTPEQIVETVIQEDADAVGLSILSGAHMTLVPRIMELLAEQGVDDVVVTVGGTIPSDD
                     IEELKSLGVAEVFTPGASAQQAIDFIRGAVRA"
     gene            1469..>1993
                     /locus_tag="VGN19_10495"
     CDS             1469..>1993
                     /locus_tag="VGN19_10495"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEV7196360.1"
                     /translation="MKICVLVKEVPDAAVEKRIDPSTGRMDRSGERNLNPYDTHAIEA
                     AMQIREGGAVEVDEIVAVTMGPSSATRALQKAVSLGADRSLHLSDDGLAGSDVAATGY
                     ALSKALEKESPDLVLLGQQSDDGECYTIGAVVADHLKMPSLTQVIKMDVAGDALTCER
                     QAEYGYDTVEVALPA"
BASE COUNT          326 a          682 c          689 g          296 t
ORIGIN      
        1 cgcctcccag gagctggccg agatcctggc tcacgtgatg gcccttgacg gcgccctggg
       61 gtccgggctg tcggaggttg tcgacggggt ctacaccggc cggccggtgg ggctgttcgt
      121 gtaccgcggc ggcaaggcgg aggcgatccg cgagctggcc gagcgcgagg ggtttgatct
      181 gagcgcctcc tacgcctact cggactccga gtcagacctg ccgatgctcg aggccgtcgg
      241 gcacccggtg gcggtcaacc ccgacctcac gctgggcagg atcgctcgcg agcgggggtg
      301 ggacgtgctg cgcttcgatc gactcggccg gcgcctgaag acggcggtcg cgctgggggc
      361 ggcggcgggc gcgggcggga tcggaaccgt ggtggcgctg cggcgtctgc gaccgccacg
      421 ccgcgtgagg cggctcgccg gtgcggcgca gcgtccaagc gttggtgcat agactgccgc
      481 gccatgctca cacgccgcct ccgcctcctc ctgctgctca ccgccctcgt cgtcgctgtc
      541 tccgccgtct ccgcgttcgc ctcgtcgggc aagacggtca gggtcggcga caactactac
      601 gggcccaaga ccatcagggt gggcaggggc acgaaggtga cctggaactg ggtcggcgtg
      661 ctcaagcaca acgtcgtggt ccaccagggg ccgtcggcgt tcagctccaa gacccaggtg
      721 cgcggcagct acagccatac cttcaccaag aagggcacct accagctggt ctgcacgatc
      781 cacccgagca tgaagatgat cgtcgtcgtc aagtaggacg cgtggagacg aagcgcggca
      841 ctacaatctg cccgcttcac aagatgtcct cctcagacaa gaagatccgc gtcgtcgtcg
      901 ccaagcctgg gctcgacggc catgaccgcg gcgccaagat catcgcccgc gccctgcgcg
      961 atgccgggat ggaggtgatc tacaccggtc ttcaccagac gcccgagcag atcgtggaga
     1021 cggtgatcca ggaggacgcc gacgccgtcg gcctgtcgat cctgtccggg gcacacatga
     1081 cgctggtgcc gcggatcatg gagctgctgg ccgagcaggg cgtcgacgac gtcgtcgtca
     1141 ccgtgggcgg gacgatcccg tccgacgaca tcgaggagct gaagtccctg ggggtggccg
     1201 aggtgttcac cccgggcgcc tccgcccagc aggcgatcga cttcatccgt ggcgccgtcc
     1261 gcgcctgacc tcaggcgtgg tcggaacatt cgcgtaccag ccggggggag accggtccaa
     1321 cccacccccc acccgccctc gcccgctccc cacagcgacc gattgactcg tcagtcaacc
     1381 gggtatagta gcagcacctt tccggagaga accatcgtga gcgcgcgggt cgccaacccc
     1441 gctcaggaca cttgatagga ggccacactt gaagatttgc gtcctggtga aagaggttcc
     1501 ggacgccgcc gtcgagaaac ggatcgaccc ctcgacgggg cggatggaca ggtcgggtga
     1561 gcgcaacctc aacccgtacg acacccacgc gatcgaggcc gccatgcaga tccgtgaggg
     1621 cggcgcggtc gaggtcgacg agatcgtcgc cgtgaccatg ggcccctcca gcgcgacgcg
     1681 cgcgctgcag aaggccgtgt cgctgggcgc cgaccgctcg ctgcacctgt ccgacgacgg
     1741 cctggccgga tccgacgtgg ccgcgaccgg ctacgcgctg tccaaggcgc tggagaagga
     1801 gtcacccgat ctggtgctcc tgggccagca gtccgatgac ggcgagtgct acacgatcgg
     1861 cgccgtcgtc gccgaccacc tcaagatgcc gtcgctgacc caggtcatca agatggacgt
     1921 ggccggcgac gcgctcacct gcgagcgcca ggcggagtat ggctacgaca ccgtcgaggt
     1981 ggcgctgccg gcc
//
LOCUS       DASYFY010000517         3133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1561549, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000517 DASYFY010000000
VERSION     DASYFY010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1561549"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1348
                     /locus_tag="VGN19_10500"
     CDS             <1..1348
                     /locus_tag="VGN19_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013883541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEV7196361.1"
                     /translation="HTAEGNQMGPTICFRGIDNASYYRLVDEDKAHYYDTTGTGNSLL
                     MRHPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDKLSAFFDLVQQDPIVS
                     QVKLIAEPWDVGDGGYQVGNFPPLWTEWNGQYRDTVRDFWRGEPATLGEFASRITGSS
                     DLYEHSGRKPIASINFVTAHDGFTLRDLVSYNEKHNEANGEDNNDGESHNRSWNCGAE
                     GPTKNRKINALRRRQQRNVLATVLLSQGVPMLLHGDELGRSQGGNNNAYCQDNEVSWI
                     DWKLDQDQVDLIGFTQQLVRLRREHPVLRRRRFFAGSASHGGESEIGEIAWFEPNGTH
                     MDEESWDNGYARSVMVFFNGQAIPELDSRGQRTVDDHFLVIFNAHSEPIDFNLPDADY
                     GDAWTVIVDTAVDEQVEGKTYAPGDTVVAQDRSTVVLQCPRPASSGAPGGAAIARR"
     gene            1354..>3133
                     /gene="treY"
                     /locus_tag="VGN19_10505"
     CDS             1354..>3133
                     /gene="treY"
                     /locus_tag="VGN19_10505"
                     /EC_number="5.4.99.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047470 - (1,4)-alpha-D-glucan
                     1-alpha-D-glucosylmutase activity [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose synthase"
                     /protein_id="HEV7196362.1"
                     /translation="MSSVPHDNAPGMPRVRRPHRPAADRVVPTATYRLQIQPEFTFEQ
                     AAEQAAYLAALGVSHAYLSPVLQPTPGSTHGYDVVSHEFLNEEAGGAQGFDLLSAATR
                     AHGLGLVVDVVPNHMTTPTPAWLNHPWWLLLRDGPESDHARWFDVDWDAEDGHLLMPV
                     LGASLEAVLEAGELTVAHSRGRHSDETVLTYYDHEFPVRPGTESLELAELVAAQWYRL
                     CDWREGGSRLNYRRFFDVTTLAAVRVEDDHVFDETHRLLLEEFRTGTIDGFRIDHPDG
                     LATPAGYLSRLADATGDAWVVAEKILEGHEQLPEDWRCAGTTGYDTLLRVQQVFVDGQ
                     GEQGLTALADELLGEHQDLASMVQSAKELVVREVQAPEVLRLLRLLARIVPAEDLNSL
                     RRGLQSLLTAMDRYRAYLVPGEQADPTQLRVLAQAEARAAESLAEEDLDALAVVAQLV
                     GGGAVAGAAPGSDVAQHELMVRFQQTCGPVMAKAVEDTAFYRYARLSALNEVGGDPAQ
                     LGIEPAQLHAFAERQLASWPTTMTTLSTHDTKRSEDVRARLSVLAELPDEWRSWVLRA
                     WDLAAPARGEALDAATEYLLWQTVVGA"
BASE COUNT          515 a         1087 c         1059 g          472 t
ORIGIN      
        1 ccacaccgcc gagggcaacc agatgggccc caccatctgc ttccgcggga tcgacaacgc
       61 ctcgtactac cgcctggtcg acgaggacaa ggcgcactac tacgacacga ccggcaccgg
      121 taacagcctg ctcatgcggc acccgcacgt cctgcagctc atcatggact cgctgcgcta
      181 ctgggtgacc gagatgcacg tcgacgggtt ccggttcgac ctggcggcga ccctggcccg
      241 tcagttccac gaggtcgaca agctgtccgc cttcttcgac ctggtccagc aggacccgat
      301 cgtcagccag gtcaagctca tcgccgaacc ctgggacgtc ggcgatggcg gttaccaggt
      361 cggcaacttc ccgccgctgt ggaccgagtg gaacggtcag taccgcgaca cggtgcggga
      421 cttctggcgc ggtgagccgg cgacgctcgg agagttcgcg tcgcggatca ccggttcgtc
      481 cgacctctac gagcacagtg gccgcaagcc gatcgcgtcc atcaacttcg tgaccgccca
      541 tgatggcttc acgctgcgag acctggtgtc ctacaacgaa aagcacaacg aggcgaacgg
      601 cgaggacaac aacgacggcg agagccacaa ccgctcctgg aactgtggcg ccgaaggccc
      661 gaccaagaac cggaagatca acgctctgcg tcgacgccag cagcgcaacg tcctggcgac
      721 cgtgctgttg tcccagggag tacccatgct gctgcatggt gacgagctcg gacgaagcca
      781 gggcggcaac aacaacgcct actgccagga caacgaagtc tcctggatcg actggaagct
      841 cgaccaggac caggttgacc tcatcggctt cacccagcag ctggtccgac tgcgccgcga
      901 gcacccggtg cttcgccgtc gccgcttctt cgccggctcg gcatcgcacg gcggcgagag
      961 cgagatcggc gagatcgcct ggttcgagcc caacggcacc cacatggacg aggagtcgtg
     1021 ggacaacggc tacgcccgct ccgtgatggt gttcttcaac gggcaggcca tccccgagct
     1081 cgactcgcgc ggccagcgca ccgtcgacga ccacttcctg gtcatcttca acgcccactc
     1141 tgaaccgatc gacttcaacc tcccggacgc cgactacggc gacgcctgga ccgtgatcgt
     1201 cgacacggcc gtcgacgagc aggtcgaggg gaagacgtac gcccccgggg acaccgtggt
     1261 ggcgcaggac cgcagcacgg tggtgttgca gtgcccgcgg ccagcatcct ccggtgcgcc
     1321 aggcggtgcc gcgatcgcgc ggcggtgaca ggcgtgagtt ctgtgcccca cgacaacgct
     1381 cccggtatgc cgcgggtgcg tcgcccgcac cggcctgcgg ctgaccgggt cgtccccacg
     1441 gccacctatc gtctgcagat ccagccggag ttcaccttcg agcaggctgc cgagcaggcg
     1501 gcatacctcg ccgcgctcgg ggtgtcgcac gcgtacctct cgcccgtgct gcaacccacg
     1561 ccaggatcga cgcacgggta cgacgtggtg agccatgagt tcctcaacga ggaggctggc
     1621 ggcgcgcagg ggttcgacct cctcagcgcg gcgaccagag cgcatgggct gggcctggtc
     1681 gtggacgtgg tcccgaacca catgacgact ccgaccccgg cgtggctcaa ccatccgtgg
     1741 tggctgctcc tgcgtgacgg cccagagtcc gaccatgccc gctggttcga cgtggactgg
     1801 gacgccgagg acggtcacct cctgatgccc gtactcggcg ccagcctcga ggccgtactc
     1861 gaggcggggg agctgaccgt cgcgcacagc cggggacggc acagtgacga gacggtgctg
     1921 acgtactacg accacgagtt ccctgtgcgg cctgggaccg agtcgctcga gctggctgag
     1981 ctggtcgccg cccagtggta ccgcctgtgc gactggcgcg aaggtggcag ccggctgaac
     2041 taccgcaggt tcttcgacgt caccaccctc gcggccgtcc gcgtcgagga cgaccacgtc
     2101 ttcgacgaga cccatcggtt gctgctcgaa gagttccgca ccggcaccat cgacggcttt
     2161 cggatcgacc accccgacgg tctcgccact ccggccggct acctgagccg gctcgccgat
     2221 gccaccggtg atgcgtgggt cgtcgccgag aagatcctcg aggggcacga gcagctcccc
     2281 gaggactggc gctgcgcggg aaccaccggc tacgacacgc tgctgcgcgt tcagcaggtc
     2341 ttcgtcgacg ggcagggaga gcaggggctc accgcgctgg ccgatgagct gttgggcgaa
     2401 catcaggatc tcgcgtcgat ggttcagagt gccaaggagc tggtggttcg ggaggtgcag
     2461 gcgcccgagg tcttgcgact cctgcgactg ctggctcgga tcgttcccgc cgaggacctc
     2521 aacagcctcc gtcgcgggct gcagtcgctg ttgacggcga tggaccgcta ccgggcctac
     2581 ctggtgccgg gggagcaggc ggaccccacc cagcttcggg tgctggccca ggcggaggcg
     2641 cgcgccgccg agtcgctggc cgaggaggat ctcgacgcgc tcgccgtggt cgcccagctg
     2701 gtgggcggtg gagccgttgc cggcgccgcg cccggctccg acgtcgccca gcacgagctc
     2761 atggtgcgct tccagcagac ctgcgggccc gtgatggcca aggcggtcga ggacacggcg
     2821 ttctaccgct acgcccggct cagcgcgctg aacgaggtcg gcggcgaccc tgcgcagctg
     2881 gggatcgagc ctgcgcagct gcatgccttc gccgagcggc agctggcctc gtggccgacg
     2941 acgatgacca ccctgtcgac gcacgacacg aagcgctctg aggacgtgcg ggcccgcctg
     3001 agcgtgcttg ctgagctgcc ggacgagtgg cgctcatggg tgctgcgagc ctgggacctc
     3061 gcagccccgg cccgcggcga ggccctggac gccgcgacgg agtacctgct gtggcagacc
     3121 gtcgtggggg ctt
//
LOCUS       DASYFY010000518         5112 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1089652, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000518 DASYFY010000000
VERSION     DASYFY010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5112
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1089652"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VGN19_10510"
     CDS             <1..189
                     /locus_tag="VGN19_10510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196363.1"
                     /translation="RTLLERARAEVASLASRREDITRQLGSLSGVIDALSVPEHRVPE
                     QDQALPYHPAPDERHDDE"
     gene            182..1291
                     /locus_tag="VGN19_10515"
     CDS             182..1291
                     /locus_tag="VGN19_10515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196364.1"
                     /translation="MSETPSFRSVLRGYDPAQVDKWQAEHAGALDQARQESAEQTVEL
                     TQLRSALAKAREDQAAMKRSVDALRDEQASAAAPTYVSLGERIGSMLTIADEHAAEIR
                     SSATEHAQEVVGTATLQADQTRASADRYAEEVRSKADTDAARVVEKARQEADAILDDA
                     DREASARREEAEAVYEHQRARAAAAAADFEATLGHRRDKAAAEFATQMSAHEDALNQA
                     QERAATLAAESDKGHANALSESQRTLESARAEAEALLASAREKAERIRRDSERELSAA
                     TARRDSITSQLSNVRQMLATLGGGAMLESLEEPAATAPIVQEQPEAEPEAEAHFDAGD
                     AGEAHDAGEAAERAEVDESEDSPAAKKNSKAASRA"
     gene            1297..2289
                     /locus_tag="VGN19_10520"
     CDS             1297..2289
                     /locus_tag="VGN19_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005271479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7196365.1"
                     /translation="MAILVLGGTAWLGRELVAAALGRGEDVTVLARGESGPVPSGVEA
                     IRADRADPAAYEPVVGRDWDAVLDVSRQPSQVASALTALGERAATWVFVSSSSVYARA
                     DQPGADESAERLPPHESDDDGWETYGGRKVACEDLVLAALGDRALVARSGLIAGPGDH
                     TDRTGYWPLRFAHPATPDGVVLVPASAVSTQVVDVRDLATWLVDCAVGHRTGVANAAG
                     PVLPLTEHLATARTVAGHEGELVSVEPGWLEEHDVQAWSGPRSLPLWLPEPTYAGFMA
                     RRSDTARSLGLRFRPLADTLTDTLDWELQSGPGRTRKAGLTPADEASLIELARA"
     gene            2406..3041
                     /locus_tag="VGN19_10525"
     CDS             2406..3041
                     /locus_tag="VGN19_10525"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEV7196366.1"
                     /translation="MATLRLGDNAPDFTAETTEGELSFLDWKGDGWAVLFSHPADFTP
                     VCTTELGRVAQLKDEWAARDTKVIAVSVDAVEDHHAWKVDIEEVSGAAVDYPIIADKD
                     RQVAELYDMIHPAAGDTSPVRSVFIIDPVGKVRLSLTYPKSAGRNFDEILRALDALQV
                     NDSGPFSTPADWKVGERIIVAPTVSTEDAQAKYKGVEVVKPYLRYAEAPTA"
     gene            complement(3066..3905)
                     /gene="prcA"
                     /locus_tag="VGN19_10530"
     CDS             complement(3066..3905)
                     /gene="prcA"
                     /locus_tag="VGN19_10530"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005839 - proteasome core complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit alpha"
                     /protein_id="HEV7196367.1"
                     /translation="MSSMPFYVSPEQLMKDRADYARKGIARGRSVVVLGYDKGIAFVA
                     ENPSRALHKVSEIYDRIAFAAVGKYNEFENLRVAGVRYADLRGYSYDRSDVTARGLAN
                     AYAQTLGTVFTQESKPYEVEIVVAEVGTSSDEDQIYRLTYDGSVADELGFVAMGGAAE
                     PIETGLKDRWTPGLSLADALILAVDLLGQDPTNGPGRQLTAAQLEVAVLDRERPRRTF
                     RRIGGGLLTALLSKDDPTHDAPPEDDPGPGRHDTLTGEASPRDESTNPQTQRPQDTEN
                     PSD"
     gene            complement(3902..4729)
                     /gene="prcB"
                     /locus_tag="VGN19_10535"
     CDS             complement(3902..4729)
                     /gene="prcB"
                     /locus_tag="VGN19_10535"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005839 - proteasome core complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEV7196368.1"
                     /translation="MTTGAGAGRLPAAYLTTGSSSFTEFVGAHAPELLPSGRRLPAGS
                     SLEAPHGTTIVTATFDRGVVMAGDRRATMGNIIANRDMEKVFAADEYSAVGIAGTAGL
                     AIELVKLFQVELEHYEKIEGTLLSLEGKANRLASMIRANLGMAMQGLAVVPLFAGYDL
                     EAATGRIFSYDVTGGCYEEHDHHSVGSGSLFARGSLKKLWHPGLSSDDSVRIVVEALY
                     DAADDDSATGGPDVGRRIWPTVAVVGGDGVQFVPDDQLRTVVESVIAARQGNPGGAR"
     gene            complement(4726..4932)
                     /locus_tag="VGN19_10540"
     CDS             complement(4726..4932)
                     /locus_tag="VGN19_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_043806102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquitin-like protein Pup"
                     /protein_id="HEV7196369.1"
                     /translation="MPSQEQSRPQRREDAPDEAPEPTPASPEASARKENLDSDIDSVL
                     DEIDGVLESNAEEFVRGVVQKGGQ"
BASE COUNT          790 a         1845 c         1730 g          747 t
ORIGIN      
        1 cgcaccttgc tcgagcgcgc ccgagccgag gtggcttcgc tggcctcgcg gcgcgaggac
       61 atcacccgtc agctcggcag cctctctggc gtgatcgacg ccctgtccgt tccggagcac
      121 cgcgtgcccg aacaagacca agctctcccc tatcaccccg cacccgacga aagacacgat
      181 gatgagtgag accccttcct tccgcagcgt cctgcgtggc tacgaccccg cccaggtcga
      241 caagtggcag gcggagcacg ccggcgccct cgaccaggcc cgccaggagt cggccgagca
      301 gaccgtcgag ctcacccagc tgcgctcggc cctggccaag gcgagggagg accaggccgc
      361 gatgaagcgc tccgtcgacg ccctgcggga tgagcaagcc tcggcggcag ccccgacgta
      421 cgtgtccctg ggcgagcgca tcggctcgat gctgaccatc gcggatgaac acgccgccga
      481 gatccgctcc agcgccacgg aacacgcgca ggaggtcgtg ggcaccgcca ccctccaggc
      541 ggaccagacc cgggcctccg cagaccgcta cgccgaagag gtccgcagca aggcggacac
      601 cgacgcggca cgcgtcgtgg agaaggcccg gcaggaggct gacgccatcc tcgacgacgc
      661 cgaccgcgaa gcttcggccc ggcgcgagga ggccgaagcc gtgtacgagc accagcgcgc
      721 ccgtgcagcc gcggccgccg ctgacttcga ggccacgctt ggtcaccgac gtgacaaggc
      781 ggcggccgag ttcgccacgc agatgtctgc gcacgaggac gccctcaacc aggcccagga
      841 gcgcgccgcg accttggccg ccgagagcga caagggtcac gcgaacgccc tctcggagag
      901 ccagcgcacg ctggagtcag ctcgcgccga ggccgaggcg ctgctggcgt cggcccggga
      961 gaaggccgag cgcatccgcc gggactcaga gcgcgagctg tccgcggcga cggcacgacg
     1021 cgacagcatc acctcacagc tgagcaacgt tcgacagatg ctggccaccc tcggcggcgg
     1081 cgccatgctc gagtcgctcg aggagcctgc ggccaccgca ccgatcgtgc aggagcagcc
     1141 cgaggcagag cccgaggcag aggctcactt cgacgctggc gatgccggcg aggcccacga
     1201 tgccggcgag gctgccgaac gcgccgaggt ggacgaatcc gaggactccc ccgcagccaa
     1261 gaagaactcc aaggccgcaa gccgggcctg acccgcatgg cgattctcgt gctgggtggc
     1321 acggcctggc tgggccgcga gctggttgcc gcggcgctgg ggcgcggcga agacgtcacc
     1381 gtcctggccc gtggtgagtc cggtcccgtg ccctcaggag tggaggccat ccgggccgac
     1441 cgtgcggacc cggcggcata cgagccagtg gtcgggcggg actgggacgc cgtcctggac
     1501 gtctctcgcc aacccagcca ggtagccagc gcgctcaccg ccctgggcga acgggcggcg
     1561 acctgggtgt tcgtgtcctc gtcctcggtc tacgcccgcg cggaccagcc gggcgccgac
     1621 gagagcgcgg aacgcctccc cccgcacgag tcggacgatg acggctggga gacctacggc
     1681 ggtcgcaagg tcgcctgtga agacctggtg ctggccgcgc tgggcgatcg tgccctggtg
     1741 gcccgaagcg ggctcatcgc cggtccgggc gaccacaccg accgcaccgg ctactggccc
     1801 ctacgctttg cccatcctgc gacccctgat ggtgtggtgc tggtccccgc cagtgccgtg
     1861 agcacccagg tcgtcgacgt ccgcgacctt gcgacctggc tcgtcgactg cgcggtgggg
     1921 caccgcaccg gagtcgcgaa cgctgccggc ccggtgctgc ccctgacgga gcacctggcg
     1981 accgcgcgga ccgtggccgg ccacgagggt gagctcgtga gcgtcgagcc cggctggctc
     2041 gaggaacacg acgtgcaggc ctggtcgggt ccccggagcc tgccgctgtg gcttccagag
     2101 cccacgtatg ccggcttcat ggctcgacgt tcggacaccg cccgatcgct cggcctgagg
     2161 ttccgcccgc tggccgacac cctcacggat acgttggact gggagctgca gtccgggccg
     2221 ggccggaccc ggaaggcagg actgaccccg gccgacgaag catcgctgat cgagcttgcc
     2281 cgggcctgac ccggcccccg gggtccccag ccgttccagt atccggacaa ggtatccaca
     2341 cttcgatcag gtaacggcat gtttggtctc gacaaacatc gcgttacctt cgagaggaag
     2401 ccgtcatggc cacgctgcga ctgggcgaca acgcccctga cttcaccgcc gagaccaccg
     2461 aaggcgagct gagcttcctg gactggaagg gcgacggctg ggcggtcctg ttcagccacc
     2521 ccgcggactt caccccggtg tgcaccaccg agctcggccg cgtggcgcag ctcaaggacg
     2581 agtgggccgc ccgagacacc aaggtgattg cggtgtccgt ggacgcggtc gaggaccacc
     2641 acgcctggaa ggtcgacatc gaggaggtct ctggcgcggc ggtcgactat ccgatcatcg
     2701 cggacaagga ccgccaggtc gccgagctgt acgacatgat ccaccctgct gccggcgaca
     2761 cctcccccgt ccgctcggtc ttcatcatcg acccggtggg caaggtccgc ctgtcgctga
     2821 cctaccccaa gagcgccggc cgcaacttcg acgagatcct gcgcgcgctc gacgccctcc
     2881 aggtcaacga ctccggcccg ttctcgaccc cggccgactg gaaggtcggc gagcgcatca
     2941 tcgtggctcc gaccgtgtcc accgaggacg cccaggcgaa gtacaagggc gtggaggtcg
     3001 tcaagccgta cctgcggtac gccgaggcac cgaccgcctg aggctgcggt cccgtccccg
     3061 gcggctcagt cgctggggtt ctcggtgtcc tgcgggcgct gggtctgcgg gttcgtggac
     3121 tcgtcacggg gcgacgcctc gccggtgagc gtgtcgtgtc ggcccgggcc ggggtcgtcc
     3181 tcggggggtg cgtcatgcgt cgggtcgtcc ttgctgagca gcgccgtcag gagccctccg
     3241 ccgattcggc ggaacgtccg ccgcgggcgt tccctgtcca gcaccgcgac ctcgagctga
     3301 gcggctgtga gctggcgacc gggcccgttc gtggggtcct ggcccaacag gtcgacagcg
     3361 aggatcaggg cgtcagccag cgagaggcca ggcgtccagc ggtctttcag acccgtctcg
     3421 atcggttccg ccgcgccacc catggccacg aagcccagct cgtcggcgac ggagccgtca
     3481 taggtcaacc ggtagatctg gtcctcgtcc gagctggtgc ccacctcggc caccacgatc
     3541 tcgacttcgt acggcttgga ctcctgggtg aagaccgtcc ccagcgtctg cgcgtaggcg
     3601 ttggccagac cgcgtgcggt cacgtcgctg cggtcgtagg agtagccgcg caggtcggca
     3661 taccgcacgc cggcgacgcg aaggttctcg aactcgttgt acttgccgac cgcggcgaac
     3721 gcgatccggt cgtagatctc cgacaccttg tgcagcgccc gcgacgggtt ctcggcgacg
     3781 aacgcgatgc ccttgtcgta accgaggacc acgaccgagc gaccgcgcgc gattcccttg
     3841 cgcgcgtagt cggcccggtc cttcatcagc tgctcgggcg agacgtagaa cggcatactg
     3901 ctcatcgcgc gcctcctggg ttgccctgcc gggccgcgat cactgactcg accaccgtgc
     3961 ggagctggtc gtccggaacg aactggacgc cgtcgccgcc gacaaccgcg accgtcggcc
     4021 agatccgccg ccccacgtcc ggaccgccgg tcgccgagtc gtcgtctgcc gcgtcgtaca
     4081 aggcctcaac cacgatccgc acgctgtcat ctgatgacag accagggtgc cacagcttct
     4141 tcagcgagcc ccgggcgaac agcgagcccg accccacgct gtgatggtca tgctcctcgt
     4201 agcagccgcc ggtcacgtca taggagaaga tccggccggt cgccgcctcc aggtcgtagc
     4261 ccgcgaagag cggcaccacg gccagtcctt gcatggccat gcccaggttc gcgcggatca
     4321 tcgacgcgag cctgttggcc ttgccctcca aggacaacag ggtgccctcg atcttctcgt
     4381 agtgctcgag ctccacctgg aacagcttga cgagctcgat ggccagacct gccgtaccgg
     4441 cgatgccgac ggcggagtac tcgtcggccg cgaagacctt ctccatgtcc cggttggcga
     4501 tgatgttccc catggtggcg cggcggtccc ccgccatcac cacaccacgg tcgaacgtgg
     4561 ctgtgacgat ggtggtgccg tgtggtgcct ccaagctgct gcccgcaggc aggcgacgcc
     4621 cggatggcag cagctcgggc gcatgagcgc ccacgaactc ggtgaacgac gacgatcctg
     4681 tcgtcaggta tgccgcgggg agcctccccg caccggctcc agtggtcact ggccgccctt
     4741 ctggacgact ccgcggacga actcctcggc gttggactcc agcacgccgt cgatctcgtc
     4801 cagcacgctg tcgatgtcgg agtcgaggtt ctccttgcgg gcgctcgcct cgggtgaggc
     4861 cggagtcggc tccggcgcct cgtccggggc gtcctcacgg cgttgtggtc ggctctgctc
     4921 ttggctcggc atcggtcgtg acctctcgct cagggggctt gtctgaccct aactcggacc
     4981 ctagtgcgac cctagcccgc ggcggaggcc aactcgcgca acagggtcgc ggcgtccgga
     5041 ctgcggtcca gaagtccccc gacgctggcc ttggtcccgc gcagtggctc cagcatcgga
     5101 acgcgctgca ag
//
LOCUS       DASYFY010000519         5327 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1194203, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000519 DASYFY010000000
VERSION     DASYFY010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5327
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194203"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /gene="ssrA"
                     /locus_tag="VGN19_10545"
     tmRNA           complement(<1..220)
                     /gene="ssrA"
                     /locus_tag="VGN19_10545"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(305..733)
                     /locus_tag="VGN19_10550"
     CDS             complement(305..733)
                     /locus_tag="VGN19_10550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011693972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196370.1"
                     /translation="MVTNASIVPAGTAALERGESLARGDLFDPDCPTRVVLDRIGDKW
                     TALVIGALFEGPMRFTQLRQRVGGVAPKVLTQTLRAMERDGLLTRTVFAQVPPRVDYT
                     LTDLGRSLAAPLAVLTDWAETHVGAIVASRERFEAADLAK"
     gene            815..1426
                     /locus_tag="VGN19_10555"
     CDS             815..1426
                     /locus_tag="VGN19_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018778500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEV7196371.1"
                     /translation="MKIALFGASGVVGSRIAAEALRRGHQVTAITRRGTTDLPGVSVA
                     TGDLADEATVKQAAATHDVLVSATGPSRTGESHEPWLEAVQNLLDHGTEARVLFVGGA
                     GSLLTPDGTRLLDTDGFPAAYLAEATSGAAALELFRAAPAELDWTFFSPAPVIAPGER
                     TGSYTLGLDSPAGEHISAEDYAVAMLDEIERPAHRQQRFTAAN"
     gene            1550..4930
                     /locus_tag="VGN19_10560"
     CDS             1550..4930
                     /locus_tag="VGN19_10560"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004736 - pyruvate carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009374 - biotin binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HEV7196372.1"
                     /translation="MFSKVLVANRGEIAVRAFRAATELGAKTVAVFPYEDRKSEHVLK
                     ADEAYQIGDQGHPVRAYLDPEGIVRTAVEAGADAVYPGYGFLSENPDLAEACASAGVT
                     FVGPPPSVLHLTGNKARAIAAAKEAGLPTLRSSEPSNDVDTLVAAAEEIGFPIFAKAV
                     AGGGGRGMRRVERREDLKEALEACMREAESAFGDPTVFLEEAVVSPRHIEVQILADAQ
                     GNVIHLFERDCSVQRRHQKVVEIAPAPNLDPELRERMCAHAVAFAREIGYVNAGTVEF
                     LLAPDGRYVFIEMNPRIQVEHTVTEEITDVDLVSSQLRIASGETLDDLGLSQESLRIR
                     GAALQCRITTEDPANEFRPDTGRITTYRSAGGAGVRLDGGTVFVGAEIGAHFDSMLVK
                     LTCRGRDFPTAVRRARRALAEFRIRGVSTNIPFLQALLEEPDFQDGRLSTAFIDERPY
                     LRTARVSADRGTKLLTYLAEVTVNQPHGPGRTRVSPRSKLPHIDRSTPPPPGARDRLL
                     RVGPQAFADELRAQEAVGVTETTFRDAHQSLLATRVRTRDLMHVAPHVARLTPQLLSV
                     EAWGGATYDVALRFLSEDPWDRLAQLREAMPNLPLQMLLRGRNTVGYTPYPTEVTDAF
                     VVEAANTGIDIFRIFDALNDVNQMRPAIDAVRATGTAVAEVALCYTGDLTSPSEKLYT
                     LDYYLRLAEQIAEAGAHVIAIKDMAGLLRAPAARTLVTALRERFDQPVHLHTHDTAGG
                     QLATLLAAIDAGVDAVDVASAAMSGTTSQPPMSSLVAATDGTPRETGLDLQTVCDLEP
                     YWEAVRQLYFPFESGLPAPTGRVYTHEIPGGQLSNLRQQAIALGLGDHFEAVEDMYAA
                     ANRILGNIVKVTPSSKVVGDLALALVGAKADPADFEANPTKYDIPGSVIGFLSGELGD
                     PPGGWPEPFRTKALEGREIKPPVTELSEEDRAALAATPRHTLNRLLFPGPTEEFAKSR
                     DAYSDLAVLGTREFLHGIEVGFEHEIDLEPGKRLLIGLQSVSDADERGMRTVMFTMGG
                     QLRPVQARDEKVTVDVKAAEKADPTAKGQVAAPFAGVVSLAVTEGDRVEAGAVVATIE
                     AMKMEANITAAVAGTVSRVAIGSQQQVEGGDLLVVVDA"
     gene            5048..5221
                     /locus_tag="VGN19_10565"
     CDS             5048..5221
                     /locus_tag="VGN19_10565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEV7196373.1"
                     /translation="MGGDDKISNMAEDVSGKAKEATGKATDNESLEAEGKADQTKADL
                     KQAGEKVKDAFGN"
BASE COUNT          892 a         1888 c         1783 g          764 t
ORIGIN      
        1 ccccaacatg actacgcagc aagttctcta gctgacgcca gacactgagt cgagaactac
       61 ctcaggctga cggacttcgg agctcgctca ggcggcgagg gcgaagtcgg tgcgcttgga
      121 gttggcacct attggtttgc caggagcgtt aacgagataa ccaggcatcc tcgacccgct
      181 tcccctgata tgccgaccaa tgtcgaaacc gatcaccccc aggctcctgc gagtgcaggg
      241 gtgttcacac acacgctgtt cagttgtggg tcaagcctat cgtgcaacgc tgtgaggctc
      301 ccaatcattt cgcgaggtcg gcagcctcga agcgctcccg gctggcgacg atcgcgccga
      361 catgggtttc cgcccagtcg gtgagcacgg cgagcggggc ggccagcgaa cggccgaggt
      421 cggtcagcgt gtagtccacc cgcggtggaa cctgggcgaa gacagtgcgg gtaaggagcc
      481 cgtcgcgctc catggcgcgc aacgtctggg tgagcacctt gggtgccacg ccgccgacgc
      541 gctgacgcag ctgggtgaag cgcatcggcc cctcgaacag cgccccgatg accaaggccg
      601 tccacttgtc gccgatccgg tcgagcacca cccgagtcgg gcagtccggg tcgaacaggt
      661 ctccccgggc cagcgactcc ccccgctcca gcgccgccgt gccggccggg acgatcgagg
      721 cgttagtaac catgaggtac ttatagcacg ttgaagtgct cagtaaccag tggttactgt
      781 aaagcctccc tcaactcagt ggaaaggcag caccatgaag atcgccctgt tcggagccag
      841 tggagtcgtc ggttcgcgga tcgcggccga ggccttgcgc cgcggccacc aggtcaccgc
      901 gatcacccgc cgaggcacca ccgacctgcc aggcgtctcg gtcgccaccg gcgacctcgc
      961 cgacgaggcc accgtcaagc aggccgccgc cacccatgac gtcctcgtct ccgccaccgg
     1021 tccgagccgc accggcgagt cccacgagcc gtggctcgag gccgtccaga acctgctcga
     1081 ccacggcacc gaagcacgcg tgctcttcgt cggcggggcg ggctccctgc tcacgcccga
     1141 cggcacccgg ctgctcgaca cggacggctt tcccgcggca tacctggcgg aggccaccag
     1201 tggggctgcg gccctggagc tcttccgtgc ggccccggcc gagctggact ggacgttctt
     1261 ctcgcccgcc ccggtcatcg ccccaggcga acggaccgga agctacacgc tgggtctgga
     1321 ctccccagcg ggagagcaca tcagcgcgga ggactacgcg gtggccatgc tcgacgagat
     1381 cgagcggccg gcgcaccgtc agcagcgctt cactgcggcc aactagccac ggtccagcgg
     1441 gcggcccggt catggcccac aggttggtcg tgaccgggcc cgcaccgggg cggctcacta
     1501 ggatcgagcg gcaagatgcc cgcacgcctg cgcccccaca ggaggcaccg tgttcagcaa
     1561 ggtcctggtc gccaaccgcg gtgagatcgc cgtgcgagcc tttcgcgccg ccaccgagct
     1621 cggcgcgaag acggtggctg tcttcccgta cgaggaccgc aagtccgagc acgttctcaa
     1681 ggccgacgag gcctaccaga tcggcgacca agggcacccg gtccgcgctt acctcgaccc
     1741 tgagggcatc gtgcggactg cggtcgaggc cggcgcggac gccgtctacc ccggctacgg
     1801 attcctctcc gagaacccgg acctggccga ggcgtgcgcg tccgccgggg tcaccttcgt
     1861 cggtccgccg ccgtccgtgc tccacctgac cggcaacaag gcccgggcca tcgccgccgc
     1921 caaggaggcc ggcctgccga cactgcgatc ctccgaaccg agcaacgacg tcgacaccct
     1981 cgtcgcggcg gctgaggaga tcgggttccc catcttcgcc aaagccgtgg ctgggggcgg
     2041 cggccgcggt atgcggcggg tcgagcgccg cgaggacctc aaggaggccc tcgaagcgtg
     2101 tatgcgcgaa gccgagtcgg ctttcggcga cccgaccgtg ttcctcgagg aggcggtggt
     2161 cagccctcgg cacatcgagg tccagatcct ggccgacgcc cagggcaacg tcatccacct
     2221 gttcgagcgg gactgctccg tgcagcggcg tcaccagaag gtcgtcgaga tcgccccggc
     2281 gccgaacctc gatccggagc tgcgcgagcg catgtgcgcc cacgccgtcg ccttcgcccg
     2341 cgagatcggg tacgtcaacg cgggaacagt ggagttcctg ctggcaccgg acggccggta
     2401 cgtcttcatc gagatgaacc cgcgcatcca ggtcgagcac actgtcaccg aggagatcac
     2461 cgacgtcgac ctcgtcagct cacagctgcg gatcgccagc ggcgagacgc tggacgacct
     2521 ggggctgtcc caggagagcc tgcgtattcg cggcgcggcg ctgcagtgcc ggatcaccac
     2581 cgaggacccg gccaacgagt tccgccccga caccggccgc atcacgacct accgctctgc
     2641 ggggggtgcg ggcgtgcggc tggacggcgg gacggtgttc gtgggcgccg agatcggtgc
     2701 tcacttcgac tcgatgctgg tcaagctgac ctgccgcggg cgcgactttc ctaccgccgt
     2761 gcgtcgggcc cgacgggcgc tggccgagtt ccggatccgc ggagtctcca cgaacatccc
     2821 gttcctgcag gccctgctgg aggagcccga cttccaggac ggccggctct ccacggcgtt
     2881 catcgacgag cgcccgtacc tgcgcaccgc tcgggtctcc gccgaccgcg ggaccaagct
     2941 cttgacgtac ctcgcggagg tgacggtcaa ccagccccat gggccgggac gaacgcgagt
     3001 ctcaccgcgc tctaagctgc cgcacatcga tcggtcgact cccccgccgc cgggtgcccg
     3061 cgaccggctg ctgcgggtcg gtccgcaggc cttcgccgac gagctgcgcg cccaggaggc
     3121 cgtcggggtc accgagacga cgttccgtga cgctcaccag tccctgctgg cgacccgggt
     3181 gcgaacccgc gacctcatgc acgtcgcacc ccacgtggca cggctgaccc cacagctgct
     3241 gtcggtcgag gcctggggcg gcgcgaccta cgacgtcgcc ctgcggttcc tgtccgagga
     3301 cccctgggac cgcctggccc agctgcgtga ggcgatgccc aacctgccgc tgcagatgct
     3361 gttgcgcggc cggaacactg tcggttacac cccctacccc accgaggtca ccgacgcatt
     3421 cgtcgtcgaa gcggccaaca ccgggataga catcttccgc atcttcgacg ccctcaacga
     3481 cgtcaaccag atgcggccgg ccatcgacgc ggtgcgagcg accggcacgg cggtggccga
     3541 ggtggccctg tgctacaccg gcgacctgac cagcccgagc gagaagctgt acaccctcga
     3601 ctactacctg cgcttggccg agcagatcgc cgaggcgggg gcacacgtca tcgcgatcaa
     3661 ggacatggcg ggtctgctgc gggccccggc tgcgcgaacc ctggtgacag cactgcgcga
     3721 acgcttcgac cagcccgtcc acctgcacac ccacgacacc gcgggagggc agctcgcgac
     3781 cctgctggca gccatcgacg ccggcgtgga cgcggtcgac gtggccagcg ccgcgatgtc
     3841 gggcacgacc agccagccgc ccatgtcaag cctggtggca gccacggacg gcacacctcg
     3901 agagacgggc ctggacctgc agacggtctg cgacctcgag ccgtactggg aggccgtccg
     3961 ccagctgtac tttcccttcg agtcgggctt gcccgccccg acggggcgcg tctacaccca
     4021 cgagatcccc ggtggtcagc tctccaacct gcgccagcag gcgatcgcgc tcggcctggg
     4081 agaccacttc gaggcggtcg aggacatgta tgccgcggcg aaccgcatct tgggcaacat
     4141 cgtcaaggta actccgagca gcaaggtggt cggcgatctg gccctcgcac tggtgggggc
     4201 caaggccgac ccagccgact tcgaagccaa cccgaccaag tacgacatcc ccggctcggt
     4261 catcggcttc ctgtcgggcg agctgggcga ccctcccggc ggctggcccg agccgtttcg
     4321 caccaaggcg ctcgagggtc gcgagatcaa gccaccggtc accgagctca gcgaggagga
     4381 ccgggccgcg ctcgcggcga ccccgcggca tacgttgaac cggctgctgt tcccaggtcc
     4441 gaccgaggag ttcgccaaat cccgggacgc ctactccgac ctcgcggtcc taggcacccg
     4501 ggagttcctg cacggcatcg aggtgggctt cgagcacgag atcgacctcg agcccggcaa
     4561 gcgtctgttg atcgggctgc agtcggtgtc ggacgcggac gagcgcggga tgcgcacggt
     4621 catgttcacc atgggtggcc agcttcgccc ggtccaggcc cgcgacgaga aggtcaccgt
     4681 cgacgtcaag gcggccgaga aggcggaccc gaccgccaag ggacaggtgg ccgcaccgtt
     4741 cgccggggtg gtcagcctgg ccgtgacgga gggtgaccgc gtcgaggcgg gtgcggtcgt
     4801 cgccaccatc gaggccatga agatggaggc caacatcacg gccgcggtcg cggggacggt
     4861 cagccgcgtg gccatcggct cgcagcaaca ggtcgagggt ggggatctgc tcgtcgtcgt
     4921 ggatgcctag cggcagggcg gatctgctgg atgctcagcg gcgggctgcc tcaaaagggg
     4981 ttttcgtcac gtttggggtg agctgcgcca gggtagccac gaggtaccca acctaaggag
     5041 actccgcatg ggcggcgacg acaagatcag caacatggcc gaggacgtat ccggcaaggc
     5101 caaggaagcc accggcaagg ccaccgacaa cgagagcctg gaggccgagg gcaaggctga
     5161 ccagaccaag gccgatctca agcaggccgg cgagaaggtc aaggacgcct tcggcaacta
     5221 gccgctgacc ctccactacg caggcgaggg ccgggcccac gggcccggct ttcagtagga
     5281 ctgcttcctt cgagcggctc agctgccgaa ggcgtccttg accttct
//
LOCUS       DASYFY010000520         3215 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_405380, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000520 DASYFY010000000
VERSION     DASYFY010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405380"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VGN19_10570"
     CDS             complement(<1..364)
                     /locus_tag="VGN19_10570"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7196374.1"
                     /translation="MRKAHQPFRPQVSIVTGGGSGIGKAIAAELVRRGSLVVVADLDA
                     GAAQRTAAELGSSAVAATVDVADADAMRALVDRFVAEHGHLDVMVNNAGVAIGGLLEE
                     LDERHWAKAIDVNLRGVIN"
     gene            complement(357..1841)
                     /locus_tag="VGN19_10575"
     CDS             complement(357..1841)
                     /locus_tag="VGN19_10575"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7196375.1"
                     /translation="MVAPHHRVVIVGTGFSGLGMAIRLAQRGERDFVLLEKAQDVGGT
                     WRDNRYPGCACDVPSRLYSFSFDQNPTWSRDFAPASEIWAYLQGVADRYAVRDRIAFG
                     ADLRSAVFDDQTRRWSLTAADGRTWTCDALVLGVGALHEPRLPDIPGLESFAGPVMHT
                     AQWPEQDGLDGLRVGVVGTGASTVQLLPEVAPRAAHTTVFQRTPAWILAKHDKEWSPA
                     RQRRYRRWPAVQRAVRWRTYWSLEARAPLFVRFPGIARLVEREARKLLRQAVSDPVTR
                     DKLTPEYTIGCKRILLSNDYWPTFEREDVALVTDAIASVEPDAVVTADGTRHEVDALV
                     LGTGFDVVGSFERVDIRGTGGRSLADAWSGGTHTNLGITVAGFPELYLLLGPNTGLGH
                     NSVVLMIELATNYVLQCLDRGRAGARVTTERAQAAFTQEMVRRSKHTVWATGCHSWYL
                     DRFGHNTALWPGSTIAYWWRTRRVDDSHFEVLHVPAEDRESVDA"
     gene            1896..2546
                     /locus_tag="VGN19_10580"
     CDS             1896..2546
                     /locus_tag="VGN19_10580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7196376.1"
                     /translation="MSPSTTPATTHANPVRKRMPRAQREEQILVIAEQVFAERGYQAT
                     TMEDVAERVGVTKPLIYEYFGSKEGLLSACITRARTQLREATEASWAATGPDAALVEV
                     FRAGVRAFFQFIDEHATAFVLIQQEGAMASQASPLIESIRAQQSAATARTLSSAPGLA
                     AVPFELLEGYAEVIVGACERVAVWRTRRPQVTAADATELVVSTVWGGLGALLPQTS"
     gene            complement(2587..>3215)
                     /locus_tag="VGN19_10585"
     CDS             complement(2587..>3215)
                     /locus_tag="VGN19_10585"
                     /inference="COORDINATES: protein motif:HMM:NF023315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEV7196377.1"
                     /translation="TTIVQRQHQLAGFLAGTAGFANTTADFLDANGGRIIQVGRVQRP
                     TVEVFAKYSPQYPCFTQGLVDWLPRIDNAWRGDTFHLTIVTSPQRPGYHPGEEPRWGE
                     HRPASCGLLPHPNTSSTHPVPGKKFDDGTDNVGGYSSDPSFNSALPQYFSTALGAAIP
                     DPDSGLAGTDGEQQLVAALLHAGDRTSAITTLLAGPILRGATVSQDQG"
BASE COUNT          508 a         1132 c         1096 g          479 t
ORIGIN      
        1 cgttgatcac gccacgcagg ttcacgtcga tggccttcgc ccaatgccgc tcgtcgagct
       61 cctcgagcag gcctccgatg gccaccccgg cgttgttgac catgacgtcg aggtgcccgt
      121 gctccgcgac gaaccggtcg accaaggccc gcatggcgtc ggcatcggcc acatcgaccg
      181 tggccgcgac cgccgagctg cccagctcgg cagcggtgcg ctgggcggcc ccggcgtcga
      241 gatcggcgac cacgaccaga ctgccgcggc ggaccagctc ggcggcgatg gccttgccga
      301 tccccgagcc cccaccggtc acgatcgaga cctgtggtcg aaacggttgg tgggccttac
      361 gcatcaacgg actccctgtc ctcggcgggc acgtgcagga cttcgaaatg actgtcgtcg
      421 acccgtcggg tgcgccacca gtaggcgatc gtcgatccgg gccacagcgc ggtgttgtga
      481 ccgaagcggt ccaggtacca gctgtggcag ccggtcgccc acacggtgtg cttgctgcga
      541 cggaccatct cctgggtgaa ggcggcctgt gcgcgttcgg tcgtgacgcg cgccccggcc
      601 cggccccggt caaggcactg caggacatag ttggtcgcca gctcgatcat cagcacgacg
      661 gagttgtgcc cgagcccggt gttgggtccg agcaacagat agagctcggg gaagccggcc
      721 accgtgatcc cgaggttggt gtgcgttcca cctgaccagg catcggccag cgagcggccg
      781 ccggtaccgc gaatgtcgac ccgctcgaag ctgcccacca cgtcgaaccc ggtaccgagc
      841 acgagggcat cgacctcgtg acgagtcccg tcggcagtga cgaccgcgtc tggctccacg
      901 ctagcgatgg cgtcggtgac cagcgcgacg tcctcgcgct cgaacgtcgg ccagtagtcg
      961 ttggagagca ggatccgctt gcacccaatg gtgtactcgg gcgtgagctt gtcccgggtg
     1021 accgggtcgc tgacggcttg gcgcaacagc ttgcgggcct cccgttcgac cagccgtgcg
     1081 atgcccggga agcgtacgaa gagtggcgcg cgagcctcca gggaccagta ggtccgccac
     1141 cgaacagcgc gctgcaccgc gggccaccgg cggtaccgac gttgccgcgc cgggctccac
     1201 tccttgtcgt gcttggccag gatccacgcc ggggtccgct ggaacacggt ggtgtgcgcg
     1261 gcccgaggcg ccacctctgg caacagctgc accgtgctcg cccctgtgcc gaccaccccg
     1321 acccgaagac cgtccagccc atcctgttcg ggccactggg cggtgtgcat gaccggcccg
     1381 gcgaacgact cgagccccgg gatgtccggc agtcgcggtt cgtgcagggc gccgacgccg
     1441 agcaccagcg cgtcgcacgt ccaggtgcgc ccgtccgcag cggtcaggct ccagcgccgg
     1501 gtctggtcgt cgaacacggc cgagcgaagg tcggcgccga aggcgatccg gtcgcgcacg
     1561 gcataccggt cggccacgcc ttgcaggtag gcccagatct ccgatgcggg cgcgaagtcg
     1621 cgagaccacg tggggttctg gtcgaaggag aacgagtaga gccgcgacgg cacgtcgcag
     1681 gcgcagccgg gatagcggtt gtcccgccag gtgccaccca cgtcctgggc cttctccagc
     1741 agcacgaagt cgcgctcgcc gcgctgtgcc aggcgaatgg ccataccaag gccggagaac
     1801 ccggtgccga cgatgacgac ccggtggtgg ggagcgacca tactcccgaa gttaccatga
     1861 gtaagtttgc aggtcacccc cggtatcatc acggtgtgag cccctcgacc accccagcga
     1921 ccacgcacgc gaaccccgtc cgcaagcgga tgccgcgcgc ccagcgcgag gaacagatcc
     1981 tcgtgatcgc ggagcaggtg ttcgccgagc gcggctacca ggccaccacc atggaggacg
     2041 tcgccgagcg cgtcggcgtg acaaagccgc tcatctacga gtacttcggc tccaaggagg
     2101 gactgctctc cgcctgcatc acccgggccc gcacccagct gcgggaggcc accgaggcgt
     2161 cctgggccgc aaccggcccc gatgccgccc tggtcgaggt tttccgggct ggggtccgag
     2221 cgttcttcca gttcatcgac gagcacgcca ccgcctttgt gctcatccag caggagggtg
     2281 ccatggcctc acaggccagc ccgctgatcg agagcatccg cgcgcagcag tccgccgcga
     2341 cggcgcgcac gctctcctcc gcccctggcc tcgccgccgt gccgttcgag ctgctcgagg
     2401 ggtatgccga ggtgatcgtg ggtgcctgcg aacgagtggc ggtgtggcgc accagacggc
     2461 cgcaggtcac cgcggcggac gccacggaac tcgtcgtctc gacggtctgg ggcggcctcg
     2521 gagccttgtt gcctcagacg tcctgaccgc tggctcgctc aggcggggtg cgtcagcccg
     2581 ggcgactcag ccctgatcct gcgagacggt ggccccgcgc aggatcggac cggccagcag
     2641 ggtcgtgatc gccgatgtgc ggtcccccgc gtgcaacagc gccgccacga gctgctgctc
     2701 gccgtcggtg cctgcgagcc cggagtccgg gtcggggatg gcggccccca gggcagtgga
     2761 gaagtactga ggcaacgccg agttgaacga cgggtcagag ctgtatcccc cgacgttgtc
     2821 cgtgccgtcg tcgaacttct tgcccggcac cggatgagtc gacgaggtgt tggggtgagg
     2881 cagcagcccg caggacgccg gccggtgctc gccccagcgc ggctcctccc cagggtggta
     2941 cccgggacgc tgcggcgacg tgacgatcgt caggtggaag gtatcgccgc gccaggcatt
     3001 gtcgatccgc ggcagccagt cgaccaggcc ctgggtgaag caggggtact ggggtgagta
     3061 cttggcgaac acctccaccg tcggccgctg cacccgaccc acctgaatga tccgcccacc
     3121 attggcgtcc aagaaatcag ccgtcgtatt cgcaaacccc gcagtccccg ccaagaaccc
     3181 cgccaactga tgctggcgct gcacgatcgt cgtat
//
LOCUS       DASYFY010000521         1979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_825419, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000521 DASYFY010000000
VERSION     DASYFY010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825419"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..1474)
                     /locus_tag="VGN19_10590"
     CDS             complement(161..1474)
                     /locus_tag="VGN19_10590"
                     /inference="COORDINATES: protein motif:HMM:NF019976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease-related domain-containing protein"
                     /protein_id="HEV7196378.1"
                     /translation="MAWEGGSAERRAEELAEKGDASAGAWAAGAAGERRVAAALVELP
                     QTWTVLHDRLLRPGQSDANLDHVVLGPGGLFLVDAKNRAGRVTEWDGGLFQHTVREGQ
                     PVTVSLAGELEKVRGMAAFMAVETGMPVAPVLCLAGVHAEQFGAASMVRGVWVVPVSR
                     LVAWLKDRPVTLAPDALPRAAVRVMTDFPSTTTDLALLAAIGQAASAGSPPRGAGRNR
                     RAGRLQAATRQPAPPPQRRTSRAAPRRQRRRTSVMGAIARAGAGLALVALAFALLHGF
                     TSGLSSPLAKALPPSLAGAVPHGPAVAAPDCGRVTAAAVTSTIGRPVQPIATGLGCAW
                     GTRLDDPSTTLVTIELSESHAAYDLQLETSVRQRRVVYGAGLDTHFRPATALWVAIGE
                     PIGSGARRVIARADTHVVVATTALRVSDDRARAMALSIAASANGP"
     gene            complement(1608..>1979)
                     /locus_tag="VGN19_10595"
     CDS             complement(1608..>1979)
                     /locus_tag="VGN19_10595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196379.1"
                     /translation="ILVALPPGAQVAQHSDATSRMESCDGRPGTHGWSDIVVSYEFTV
                     SEPPASVLASASTAMARARWTTTGQLHSPLGAGLTWTKPVSSGVSARATLAPATRGLG
                     QPPYWDLSAVVPPAGKEVSGC"
BASE COUNT          304 a          707 c          691 g          277 t
ORIGIN      
        1 gtgtatgccg cgaggctggc tgagctggaa gtcctcagtg ccgccaggat cgtcgacctg
       61 ttggcgcccg gtcaggtgct ggtgcggctg gcggtagccg ggttcggggt gacgttgcca
      121 ccagcggtcg aggcctgacc ggggcgttcc gcaggccggg ctacgggccg ttcgccgagg
      181 ctgcgatcga caacgccatc gctcgggcac ggtcgtccga gacacgcagc gccgtggtcg
      241 cgaccacgac gtgggtgtcg gctcgggcga tgacgcgcct ggcacccgaa ccaatcggct
      301 caccgatggc gacccacaat gccgtcgcgg gccggaaatg agtgtcgagg cctgctccgt
      361 agaccacccg gcgctgccgc accgaggtct ccagctggag gtcgtatgcc gcgtggctct
      421 cgctgagctc gatcgtcacc agcgtcgtgc tcgggtcgtc gagacgagtg ccccaggcgc
      481 atcccaggcc cgtggcgatg ggctggaccg gtcgcccgat ggttgaggtc acggcagccg
      541 cagtgaccct gccacagtcc ggagccgcca cagcaggacc gtgcggcacg gccccagcga
      601 ggctgggcgg cagggccttg gcgagtgggg acgacaggcc cgaggtaaac ccgtggagaa
      661 gcgcaaaggc gagtgccacg agtgccaacc cggcacccgc tcgggcgatt gctcccatga
      721 cggaggttcg acgacgctgc cttcggggcg ccgctctgga cgttcgtcgc tgtggtggcg
      781 gcgcaggctg gcgggtggct gcctggaggc gccccgcacg ccgattgcga ccggcgcctc
      841 ggggaggcga cccagcggag gcagcttgac caatggcggc caacagggcg agatccgtgg
      901 tggtcgaagg aaagtcggtc atgacacgaa ccgcggctcg cggcaaggca tcaggggcga
      961 gagtcaccgg gcggtccttc agccacgcga ccagccgcga caccggcacg acccatacgc
     1021 cgcgcaccat gctggccgcc ccgaactgct cggcatgcac ccccgcgagg cagaggaccg
     1081 gtgccaccgg cataccggtc tcgacggcca tgaaggcagc catgccgcgc accttttcga
     1141 gctccccggc caggctgacc gtgacaggct gcccctctcg gacggtgtgc tggaacaggc
     1201 cgccgtccca ttcggtgacc cggcccgccc ggttcttcgc gtccaccaag aagagcccgc
     1261 ccggtccgag taccacgtgg tcgaggttgg catccgactg gcccggacgc agtagacggt
     1321 cgtgcagaac cgtccacgtc tgcggcagct cgaccagcgc ggccgcgacc cggcgctccc
     1381 ccgccgcacc cgctgcccaa gcacctgccg acgcgtctcc cttctcggcg agctcctcgg
     1441 ccctgcgctc ggcgctcccc ccttcccaag ccatacccga ccctctcccc cgctggctca
     1501 accggacgtg agcctagggt ggagaggctt gttctgtgcc cggaatcgag gatcaccgcc
     1561 gagcgctgcc cgaacgggcc acctcgtcgc ctgcgggaat actgcggtca gcagccggag
     1621 acttccttcc cggctggagg taccaccgcc gacaggtccc agtagggcgg ctgcccgagg
     1681 ccacgggtcg cgggcgccag cgtcgctcgc gcgctcacgc cggagctcac gggcttggtc
     1741 cacgtcaggc cggcacccag cggagaatgc agctgtcccg tcgtcgtcca ccgcgctcga
     1801 gccatggcgg tcgatgcgct cgcgagtacg gatgccggcg gctcggagac ggtgaactcg
     1861 tatgacacga caatgtcgga ccagccgtgc gtcccagggc gaccatcaca ggactccatc
     1921 cgtgacgtcg cgtcggagtg ctgagcgacc tgcgctcccg gcggcagcgc aacgaggat
//
LOCUS       DASYFY010000522         2297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1614627, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000522 DASYFY010000000
VERSION     DASYFY010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1614627"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1120)
                     /locus_tag="VGN19_10600"
     CDS             complement(47..1120)
                     /locus_tag="VGN19_10600"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEV7196380.1"
                     /translation="MTRAVLLISTSTIFIACLLALFMVVATKTRRTARSRKRAALLRP
                     FRSQLIAVSAGEDPDGQALNVLVAADGTAGRLVDQAAVDMLGKIRGLPADQLVRVLRV
                     HGAVRDALPRLEHRSPVRRAQAAQLLGLSSEASAVPALVVALGDDAVEVRTSAAYALG
                     LVGDPAAAGPLLAAVDAPGAGLPAGVAAQALLGMGVGISDALLEALGSDRPGTRHVAA
                     YLSGAGSFRRSVPALRGLLERDDDLTVRQASATALGAIGSPVDVAVLALHTAADHAVA
                     LRRICAAALGDLGDPSAVPALTRLLDDPDPRLAELAASALVKLGPTGQTVLRQRPPDR
                     PDTPRREPVEAALTVARLQGVMS"
     gene            complement(1117..1500)
                     /locus_tag="VGN19_10605"
     CDS             complement(1117..1500)
                     /locus_tag="VGN19_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196381.1"
                     /translation="MTQADGTRVLVADDDPDIRDLVEFKLSQAGYTVQAVPDGLAAWE
                     AFQDDQPDLVVLDVMMPGLSGFDVLRKIRDSEWPEVPVLLLSAKSRDSDVDTGFAVGA
                     TDYVIKPFSPRELLHRVNGILARAQ"
     gene            complement(1740..>2297)
                     /locus_tag="VGN19_10610"
     CDS             complement(1740..>2297)
                     /locus_tag="VGN19_10610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEV7196382.1"
                     /translation="AIERAKRLVEMGHDVVVLLDSITKLGRAYNLSAPASGRILSGGV
                     DSAALYPPKKFFGAARNIENGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLDR
                     GLANRRIFPAVDINNSGTRKEEILLSGEELKIMWKLRRVLAALDQQQGIELLIDRLRK
                     TKSNAEFLMQVQQTSSIRLDDDKTD"
BASE COUNT          342 a          787 c          812 g          356 t
ORIGIN      
        1 agccacacga cgacagttcg ggtggtctcc acgatcgcgt cccagctcac gacatcacgc
       61 cctgcagcct cgcgactgtc agggcggcct cgacaggctc tcggcgcggg gtgtccggcc
      121 ggtccggagg gcgctgtcgc agcacggtct gacctgtggg gccgagcttg accaaagcgc
      181 tcgcggccag ctcggccaac ctggggtcgg ggtcgtccag cagccgggtc agcgccggga
      241 cggccgaggg gtcgcccagg tcgccgagcg cagcggcaca gatccggcgc agggcgacgg
      301 cgtggtcggc agcggtgtgc agggccagca ccgccacgtc caccgggctg ccgatcgccc
      361 ccagcgcggt ggcactcgcc tgccgcacgg tgaggtcgtc atcgcgctcg aggagacccc
      421 gaagagcagg caccgagcgc cggaagctcc ctgctccgct gaggtatgcc gcgacgtgac
      481 gggtgccggg tcggtcactg ccgagggctt ccaggagcgc gtcggagatg cccacgccca
      541 tcccgagcag cgcctgcgcc gcgacaccgg cgggcagccc cgcgcccggg gcatccacag
      601 cggcgagcag ggggccggcg gctgcgggat ccccgaccaa ccccagggcg tatgccgcgc
      661 tggtccggac ctcgaccgca tcgtcgccga gggcgaccac cagggccggt acggcggacg
      721 cctcgctgct caggccgagg agctgggccg cctgcgcacg gcggaccggc gaacggtgct
      781 cgagccgtgg caatgcgtca cggaccgcac catggacgcg cagcacccgc accagctggt
      841 cagcgggcag ccctcggatc ttgccgagca tgtcgaccgc ggcctggtcg accaggcggc
      901 ctgccgtgcc gtcagcagcg accaggacgt tcagggcctg gccgtccgga tcctcgcccg
      961 cactgacggc tatcagctgg gaccggaagg gccgcagcaa cgcagcgcgc ttgcgcgacc
     1021 gcgccgtgcg gcgggtcttg gtggcaacca ccatgaacag ggcgagcaga caggcgatga
     1081 agatcgtgct cgtggagatg agcagaaccg cacgggtcat tgcgcgcggg ccaggatccc
     1141 gttgacacgg tggagcagtt cgcggggact gaagggcttg atcacatagt ccgtggcgcc
     1201 gacggcgaag ccggtgtcca catcgctgtc gcgcgacttg gcgctgagca gcagtacggg
     1261 cacctctggc cactcgctgt cccggatctt gcgcagcacg tcgaagccgg acaggcccgg
     1321 catcatgacg tccaggacca ccagatccgg ctggtcgtcc tggaacgctt cccaggcggc
     1381 gagtccatcc ggaaccgcct gcacggtgta gccagcctgc gagagcttga actcgacaag
     1441 gtcgcggatg tcggggtcgt cgtccgcgac gaggactctc gtcccgtcgg cttgcgtcac
     1501 ggccattcct ttcacttgcc ccccgatggg tgtggtctca atctaggtgc tgccggcctt
     1561 ggcggctgtc tgggactggc ctgcagtgac cgtgtcgtga ccctccggct gcgcccgcat
     1621 gcgcccgtgc acgccggtat gcgctcgtgc atgccggtac gcgcccgcgg ggcccgactc
     1681 gccttgcggc tgagggggcc ccgcggggtt gacgacaggt cgtcgacgag agctgctcgt
     1741 cagtcggtct tgtcgtcgtc gagcctgatc gagctcgtct gctgcacctg catcaggaac
     1801 tcggcgttgc tcttggtctt gcgcaggcgg tcgatgagga gctcgatgcc ctgctgctgg
     1861 tcgagcgcgg cgaggacccg acgcagcttc cacatgatct tgagctcctc gccggacagc
     1921 aggatctctt ccttgcgagt gccggagttg ttgatgtcca ccgcggggaa gatccggcgg
     1981 ttggccagcc ctcggtcgag cttgagctcc atgtttccgg tgcccttgaa ctcctcgaag
     2041 atgacctcgt ccatgcgcga gcccgtctcc acgagggcgg tcgccaggat cgtcagcgac
     2101 ccaccgttct cgatgttgcg ggcggcaccg aagaacttct tcggcgggta cagcgctgcc
     2161 gagtcgactc caccggaaag gattcgtccg ctggcagggg ctgacaggtt gtaggcgcga
     2221 cccagcttgg tgatggagtc gagcaggacg accacgtcgt ggcccatctc gacgagccgc
     2281 ttggcccgct cgatcgc
//
LOCUS       DASYFY010000523         1813 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1562127, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000523 DASYFY010000000
VERSION     DASYFY010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1562127"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..671
                     /gene="modA"
                     /locus_tag="VGN19_10615"
     CDS             <1..671
                     /gene="modA"
                     /locus_tag="VGN19_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018778320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEV7196383.1"
                     /translation="GTVTVLAAASLTESFDRLKQDFEAANPGVTVETSYGSSATLVQQ
                     VDNGAPASVIALAGTAAAAPLDKSMVKDTKTFATNTLEIAVPPGNPAKIATFADLAKP
                     GVKVVVCAPAVPCGAVAAKVEKNTGVTLKPVSEEQSVTDVLGKVTSGEADAGLVYVTD
                     VKGAGDKVQGVPFPESSSAVNIYPIAALKSSTNAALAQEFVSAVTGADGQAILAAAGF
                     ARAP"
     gene            668..1459
                     /locus_tag="VGN19_10620"
     CDS             668..1459
                     /locus_tag="VGN19_10620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014922816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196384.1"
                     /translation="MSSRTPRLGLPAWVFVPAAVGVLFVLLPLVAMLSRVEWAQFPAL
                     ITSESSRAALLLSLRTSLASTVLCLIFGVPMATVLARTHFRGQQLLRSLVLLPLVIPP
                     VVGGIALLYTFGRRGLLGHTLEVLGLQVAFSTTAVVMAQTFVAMPFLVVSLEGALRTG
                     GQRFEEVAATLGARPTTVFLRVTLPLALPGLASGAVLAFARALGEFGATITFAGSLQG
                     VTRTLPLEIYLQRETDPEAAVALSLLLVVVAALVMGFTRRSRTAL"
     gene            1456..>1813
                     /locus_tag="VGN19_10625"
     CDS             1456..>1813
                     /locus_tag="VGN19_10625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019482947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7196385.1"
                     /translation="MSLRADLTVGARGVDLELSVADGQTLAVLGPNGAGKSTVLAAIA
                     GLVRPDAGRIRLGDRVLFAATAPPTWVPPHDRGVALLAQEPRLFPHLSALDNVAFGPR
                     SSGMPRAEARARARHWL"
BASE COUNT          235 a          674 c          609 g          295 t
ORIGIN      
        1 acggcaccgt caccgtcctc gccgccgcgt cgctcaccga gtcgttcgac cggttgaagc
       61 aggacttcga ggccgccaac cccggcgtca ccgtcgagac ctcctacggc tcgagcgcca
      121 ctctcgtgca gcaggtcgac aacggcgcac cggcctccgt catcgcgctc gccggcaccg
      181 cggccgcggc gccgctcgac aagagcatgg tcaaggacac caagaccttc gcgaccaaca
      241 ccctcgagat cgccgtgcca cccggcaacc cggccaagat cgcgacgttc gccgacctgg
      301 ccaagcccgg tgtgaaggtc gtggtgtgcg ccccagcggt gccgtgcggc gccgtggccg
      361 ccaaggtcga gaagaacact ggcgtcaccc tcaagccggt cagcgaggag cagtccgtga
      421 ctgacgtgct cggcaaggtg acctcgggcg aggctgacgc agggctggtc tacgtgaccg
      481 acgtcaaggg agcgggcgac aaggtccagg gggtcccctt tcccgagtcg tcgtcagcgg
      541 tgaacatcta ccccatcgcg gctctcaaga gcagcacgaa tgccgccctc gcgcaggagt
      601 tcgtctcggc ggtcaccggc gccgatggcc aggcgatcct tgcggcggca ggtttcgcaa
      661 gggcgccgtg agctctcgga cgccgcgtct ggggctgccg gcctgggtct tcgtcccggc
      721 ggcggtcgga gtgctcttcg tgctgctgcc gctggtcgcc atgctctctc gcgtcgagtg
      781 ggcgcagttc ccagcgctga tcacctctga gtcgtcccgc gctgccctcc tgctcagcct
      841 gcgcacgtca ctggccagca cggtcctctg cctgatcttc ggagtaccga tggcgaccgt
      901 gctggcgcgc acccactttc gggggcagca gctgctgcgt tccctcgtgc ttctcccgct
      961 ggtgatcccg ccggtggtcg gaggcatagc cctgctctac acctttggcc gtcgagggct
     1021 gctgggtcac acgctcgagg ttctcggact ccaggtcgcg ttctccacga ccgccgtcgt
     1081 gatggcccag accttcgtcg cgatgccgtt cctcgtcgtc agcctcgaag gagccctgcg
     1141 caccgggggc cagcgtttcg aggaggtcgc ggcgacgctc ggcgcacgcc cgaccaccgt
     1201 cttcctccgc gtgacgctcc cgctcgccct gcccgggctc gcgtccgggg ccgtgctggc
     1261 cttcgcgcgc gccctcggcg agttcggcgc gacgatcacc ttcgcgggaa gtctccaggg
     1321 agtgacccgg accctgccgc tcgagatcta cctgcagcgt gagaccgacc ctgaggcggc
     1381 ggtggccctg tcgctgctgc tggtcgtcgt ggcggccctg gtcatggggt tcacgcgcag
     1441 gtcgaggaca gctctgtgag cctgagggcc gacctcaccg tcggggcgcg cggggtcgac
     1501 ctcgagctct ccgtcgccga cgggcagacg ctggccgtgt tgggccccaa cggcgcgggc
     1561 aagtcgacgg tgctcgcagc gatcgccgga ctggtgcgcc ccgacgccgg ccggatccgg
     1621 ctcggtgacc gggtcctctt cgccgcgacc gcaccaccga cctgggtacc accccatgac
     1681 cgcggcgtgg cactcctggc ccaggaaccc cgcctgttcc cccacctcag cgcgctggac
     1741 aacgtcgcgt tcggtccgcg cagctccggt atgccgcggg ccgaggcccg cgcgcgagct
     1801 cgccactggc tgg
//
LOCUS       DASYFY010000524         1509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_563663, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000524 DASYFY010000000
VERSION     DASYFY010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_563663"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(291..1346)
                     /locus_tag="VGN19_10630"
     CDS             complement(291..1346)
                     /locus_tag="VGN19_10630"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEV7196386.1"
                     /translation="MTQIDPARQPAAELTHLELAGVAEVMTAAGVEVDGALHASLITG
                     GRSNLTFRLSDDSSRWVLRTPPRAGRTPSAHDVGREFRVTRALGALGVPVPPAVVLCQ
                     DESVIGAPFAVAGFVDGRTVQTRADLDLLDDTTVHECVDRMVEALAGLHAVDHVSAGL
                     ERFGRPYGYSGRQVARWSSQWELVGTPGLDRAAAEVAELLSAAVPEQRSVGIVHGDFR
                     IDNTILRLDGRVRLAAIVDWELSTIGDPVADVALMCVYRHPALDLVLGAPSAWTSDRL
                     PAPDELAAKYEAAGGVELAAWEFHLALGYFKLAVIAAGIDHRFRAGATHGSGFDSAGD
                     AVGPLLEAGRALVSKGR"
BASE COUNT          231 a          536 c          528 g          214 t
ORIGIN      
        1 cctcggtcca gtatctggtg agcggcaagg tgcggctggc gccgttcgtg agccaccggt
       61 acccactggc cgagaccgcg gaggccatcg ctgcatccgc ggcagacccg acggtcatca
      121 aggccgtcgt ctatcccggc acgcagcgtg acctcggcgg cggcctgtcg gcgctctagg
      181 gtcgatccgg cgcggaagca tcccctgctg gcagcacgtc ggctgtgggc gcgatccgga
      241 tcgctgtgga atcgtccctg gcgaagccgg tccgccccgc cgcgctgccc tcagcggccc
      301 ttgctgacca gggcgcgccc tgcctcgagg agcgggccta ccgcatcgcc tgcggagtcg
      361 aagcccgacc cgtgggtggc cccggcccga aagcggtggt cgatccccgc agcgatgacc
      421 gcaagcttga agtagcccag ggcgaggtgg aactcccatg cggcgagctc gaccccgcct
      481 gctgcctcgt acttcgccgc cagctcgtcc ggggccggga ggcggtcgct cgtccatgcg
      541 ctcggggcgc cgagcacgag gtcgagcgca gggtggcggt agacgcacat cagtgccacg
      601 tcggcgaccg ggtccccgat cgtggagagc tcccagtcca cgattgcggc caggcgaacc
      661 cggccgtcga gccgcaggat cgtgttgtcg atgcggaagt ccccgtggac gattccgaca
      721 gagcgctgct ccggcacggc ggcactgagc agctccgcga cttctgcagc ggcgcggtcg
      781 agtccgggcg ttcccacgag ctcccactgc gaggaccacc gtgcgacctg gcggccgctg
      841 tagccatagg gtcgcccgaa gcgctccagc ccggcgctca cgtggtcgac ggcatgcagg
      901 cccgcgaggg cctcgaccat gcgatcgaca cactcatgaa ccgtcgtgtc atcgagcagg
      961 tcgaggtcgg cgcgagtctg cacggtcctc ccgtcgacga aacccgccac ggcgaacggg
     1021 gcgccgatca cgctctcgtc ctggcacagc accactgcgg gcgggaccgg gacacccaac
     1081 gcacccaggg cgcgggtgac ccggaactcg cgcccgacgt cgtgcgcgga gggagtgcgc
     1141 cccgctcgag gcggagtacg cagcacccaa cgcgagctgt catcgctcag cctgaaggtc
     1201 aggttggagc ggccaccggt aatcagggac gcatgcagag caccgtcgac ctcgacgccc
     1261 gcggccgtca tcacctcggc gacacctgcc agctcgaggt gcgtgagctc agccgccggc
     1321 tgcctcgcag ggtcgatctg ggtcatgggt gttgtccttt tccaagcgag gcacgagaac
     1381 cacgggggca atggctggcg cgatcgtcgt cagtcatctg ctcagccgag atatggcggg
     1441 accctgcgca gctcgtcgcg ggcgatggaa cgtcggtgga ccgcgtccgg cccgtccacg
     1501 atccgcagg
//
LOCUS       DASYFY010000525         1522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_510986, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000525 DASYFY010000000
VERSION     DASYFY010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510986"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VGN19_10635"
     CDS             <1..192
                     /locus_tag="VGN19_10635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196387.1"
                     /translation="NVDNDERLFRRPAGGRRPARQGQVGQCSAADSAKGWERPRGPVP
                     PLRFPVRLDLGELEVSSAA"
     gene            complement(176..1384)
                     /locus_tag="VGN19_10640"
     CDS             complement(176..1384)
                     /locus_tag="VGN19_10640"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEV7196388.1"
                     /translation="MRNTRTITWAVPLVLTASLALAACGNSNSSSSSSKSSSGGLGGS
                     GGGATYSIAFEGPLSGDNQQLGINEVNAVQVAIDQANKSSDLGFKLKLVKADDQGDPA
                     QAPTAAASVIQDQSVLGVVGPSFSGATKAVATTYGQANMVIISPSATNDTLSQQGFTA
                     FHRVVPPDSLEGTELAQYMAKKGYKKVVVIDDLSDYGKGVSDTVQKTLAAAGVNVTRI
                     GVDAKTTDYGATATQVASSGAQALFYGGYDAQAGQLAKALTAANFTGVRYGGNGDKST
                     VFTQGAGASGDGWFFSCGCSDAVTAPNAKAFTDAYRATFNTDPSTYSPEAYDATNAMI
                     QAIKAAAKNGTPTRQSVGQAVNNLDYKGLTTTVKFDKNGELAASSQIINLFEQKNGKI
                     VILGDIKQQS"
BASE COUNT          206 a          485 c          551 g          280 t
ORIGIN      
        1 aacgtggaca acgacgagcg cctcttccgt cggccggccg ggggacgtcg cccggcacgg
       61 caggggcagg tgggtcagtg ctcggcagcg gacagtgcga aggggtggga gcggccacgc
      121 ggacccgtcc cacccctccg cttccctgtc cgcctggacc tgggtgagct cgaggtcagc
      181 tctgctgctt gatgtcgccc aggatgacga tcttcccgtt cttctgctcg aacaggttga
      241 tgatctgcga gctggcggcg agctcaccgt tcttgtcgaa cttgacggtg gtggtcagcc
      301 ccttgtagtc gaggttgttc accgcctggc cgaccgactg gcgggtgggc gtgccgttct
      361 tcgccgccgc cttgatcgcc tggatcatcg cgttggtggc gtcgtaggcc tccggcgagt
      421 acgtcgacgg gtcggtgttg aacgtggccc ggtaggcgtc ggtgaaggcc ttggcgttcg
      481 gcgcggtgac cgcgtcggag cagccgcagg agaagaacca gccgtcaccg gaagcgccgg
      541 caccctgggt gaacaccgtc gacttgtcgc cgttgccgcc gtagcgcaca ccggtgaagt
      601 tggccgccgt cagcgccttg gccagctggc cggcctgcgc gtcgtagccg ccgtagaaca
      661 gcgcctgggc gcccgagctg gccacctggg tcgcggtcgc gccgtagtcg gtggtcttgg
      721 cgtccacgcc gatgcgcgtg acgttgaccc cggccgcggc gagcgtcttc tggacggtgt
      781 cggagacgcc cttgccgtag tcggagaggt cgtcgatcac gacgaccttc ttgtagccct
      841 tcttggccat gtactgggcg agctcggtgc cctcgaggct gtccgggggc acgacccggt
      901 ggaacgcggt gaagccctgc tggctcaggg tgtcgttggt ggccgacggc gagatgatca
      961 ccatgttggc ctggccgtac gtggtcgcca cggccttggt cgcgcccgag aacgacgggc
     1021 cgacgacgcc gaggaccgac tggtcctgga tcaccgaggc cgccgcggtc ggtgcctgcg
     1081 ccgggtcgcc ctggtcgtcg gccttgacca gcttgagctt gaagcccagg tcgctggact
     1141 tgttggcctg gtcgatggcg acctggacgg cgttgacctc gttgatgccg agctgctggt
     1201 tgtcaccgga cagcgggccc tcgaaggcga tggagtacgt ggcgccgcca ccggaaccac
     1261 cgaggccgcc cgagctcgac ttggacgagc tgctggagct gttgctgttc ccgcacgcgg
     1321 ccagagccag cgaagcggtc agcaccaagg gcaccgccca ggtgatggtt cgagtgtttc
     1381 gcatgtgctt gcgtcctcct gcttcccccg cgtcagcacg cgacgcgggg cgcgatgttg
     1441 ttcggctccc cggaaagtag gcagccgaac gggcggtgtc catgttctga acccagtcgg
     1501 gcggtccgtg atgaaaacgt ga
//
LOCUS       DASYFY010000526         5030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1037073, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000526 DASYFY010000000
VERSION     DASYFY010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5030
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037073"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VGN19_10645"
     CDS             <1..231
                     /locus_tag="VGN19_10645"
                     /inference="COORDINATES: protein motif:HMM:NF022693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3046 domain-containing protein"
                     /protein_id="HEV7196389.1"
                     /translation="TRTVRLSRFWELMNDEFGESYAGSLARGHSLHALGDATVLEALE
                     RGESPRTVWAAVCDDMDVPEGRRLGVDRRMAR"
     gene            228..1262
                     /locus_tag="VGN19_10650"
     CDS             228..1262
                     /locus_tag="VGN19_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEV7196390.1"
                     /translation="MSGLDWSAHRLVLAPMAGGPSTVALAAAGAEAGMFPFLAGAYLT
                     ADRLRTEVAALRSQTSAPFGVNLFVPSPNGPSMLDDSRTYAAVLAPWAEAAGVSLGEP
                     RYDDDGFDVKVRALVELAPPVVSFSFGWPPADVVAALRAVGCEVWVTVNAPDEVVQAT
                     SLGVDGLVAQGWEAGGHRGGPSDAGVQQLAVRELVSAMRLATDLPVMVAGGVMSGGEA
                     AALLGLGATAVAFGTAFLCCPEAGTAQVHRDALTQRERTTVTRAFTGRSARALVTTWT
                     ERFGSLAPAAYPHVHHLTAPLRAHGKATGNAELVHLWAGTGHARIRALPAAELGRRLM
                     AELMAALETS"
     gene            1298..2230
                     /locus_tag="VGN19_10655"
     CDS             1298..2230
                     /locus_tag="VGN19_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7196391.1"
                     /translation="MPDDEILLSASALTKTFGDFTAVDSIDFAVRKGECFGFLGPNGA
                     GKSSTMRMVGCVSPVSSGELRLFGLDPAHDGPAIRARLGSCPQRDSLDEELTVQENLW
                     VYGRYFGLSRKEVRSRAAELLDFAQLTDRAGDKVEPLSGGMKRRLTIARSLINSPEIL
                     LLDEPTTGLDPQGRHVLWDRLFRLKRSGVTLVLTTHYMDEAEQLCDRLVVMDHGRIVA
                     EGSPRELIDKYSTREVLELRFDVEDQRDFAERVAAVGERVEILPDRLLVYTDDGDAAA
                     AAVHARGIEPLSSLVRRSTLEDVFLHLTGRTLVD"
     gene            2230..3078
                     /locus_tag="VGN19_10660"
     CDS             2230..3078
                     /locus_tag="VGN19_10660"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196392.1"
                     /translation="MSPLPPTEATEHWEDRATRGPRPALSTPERVLAVWEYHLRVYRR
                     TWRGSVISRALMPLLFLLSMGVGLGSLVDHRAGGVHGVPYLMFVAPAILAVQTMWVAN
                     GESTYQVLGYIKWNMSYHAQLATPLTVRDVLSGHFLAVACHLVMSTSFFMVVAALFGG
                     FHSWWALLCLPIAILTGMAFSIPMFAFTAVQEGDNGFNILFRWIITPMMLFSGTFFPI
                     QQLPGWMQPIAWVTPLWHGVEASRAVASGAVAWGPLFGHLLVPLLYAVVGWWLAERAF
                     AKRLVP"
     gene            3075..3905
                     /locus_tag="VGN19_10665"
     CDS             3075..3905
                     /locus_tag="VGN19_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012243743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196393.1"
                     /translation="MSATTTPTSSAARVARLVPMPAGAGLARMMVERNITAFRRGWIA
                     LVTGFAEPVFYLFSLGIGIGALVHTVTTDSGRVVSYVQFVAPALLATSAMNGAVFDST
                     FNVFFKLKYARLYDAVLATPMGPRDIAVGEISWSLIRGGMYSALFLTVALVTGAVTSW
                     WALLALPAAVFIGFAFAAAGMFATTFMRSWVDFDYVTLAIQPMFLFSATFFPLSTYPE
                     ALRWLVQCTPLYHGVALERALLLGDVGWGVLGHVLYLLVLGGLGVIGAARRLERLLLS
                     "
     gene            4150..>5030
                     /gene="recA"
                     /locus_tag="VGN19_10670"
     CDS             4150..>5030
                     /gene="recA"
                     /locus_tag="VGN19_10670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEV7196394.1"
                     /translation="MAATTSSNGPDQKAKSLDSVMGQIEKSFGKGAVMRLGDDVRPPI
                     EVIPTGSIALDIALGIGGLPRGRVVEIYGPESSGKTTVALHAIANAQKAGGIAAFIDA
                     EHALDPEYAKKLGVDTDALLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRA
                     EIEGEMGDSHVGLQARLMSQALRKLTGAINNTGTTAIFINQLREKIGVMFGSPETTTG
                     GKALKFYASVRLDVRRIETLKDGTDPVGNRTRVKVVKNKVSPPFKQAEFDILYGFGIS
                     REGGLIDMGVEQGFVRKA"
BASE COUNT          699 a         1712 c         1738 g          881 t
ORIGIN      
        1 actcgcacgg tgcgtctgag caggttctgg gaactgatga acgacgagtt cggcgagtcc
       61 tacgcgggct cgctcgctcg cgggcacagc ctgcatgccc tcggcgacgc gaccgtactc
      121 gaggctctgg agcgtgggga gtcgccccgc acggtttggg cggcggtgtg cgacgacatg
      181 gacgtccccg agggacgccg ccttggcgtc gaccgccgaa tggcccgatg agcgggctcg
      241 actggtccgc acaccggctg gtcctcgctc cgatggccgg cggccccagc acggtcgccc
      301 tcgccgcggc gggtgccgag gccggaatgt ttcccttcct ggctggcgcg tacctcaccg
      361 ctgaccgcct gcgcaccgag gtcgccgcgc tgcgatctca gacgagcgcc ccgttcgggg
      421 tcaacctgtt cgtcccctcg ccaaacggcc cgtccatgct cgacgactcc cggacctatg
      481 ccgcagtgct ggccccctgg gccgaggccg ccggggtgtc cctgggtgag ccgagatatg
      541 acgacgatgg cttcgacgtg aaggtacgcg cgctggtgga gctcgccccg ccggtggtca
      601 gcttctcctt tggctggccc cccgcggacg tggtcgcggc tctgcgggcc gtcggttgtg
      661 aggtctgggt caccgtcaac gcgccggacg aggtcgtcca ggccacgagc ctcggcgtcg
      721 atggcctggt cgcccagggg tgggaggccg gtggccaccg cggcggaccg agcgacgccg
      781 gggtccagca gctcgccgtc cgcgagctgg tgtccgcgat gcgcctggcg accgacctgc
      841 ccgtaatggt cgcgggcggc gtgatgagcg gcggcgaggc ggccgcgctg ctcggactgg
      901 gggctacggc ggtcgccttc ggcacggctt tcctgtgctg tccggaggcc ggcacggccc
      961 aggtccaccg cgacgcgctc acccaacgcg agcgcaccac cgtcactcgg gcgttcaccg
     1021 ggcgcagcgc ccgggcactg gtcacgacct ggaccgagcg gttcgggtcg ctggctcccg
     1081 cggcataccc ccacgtgcat cacctcaccg caccgctgcg ggcgcatggc aaggcgaccg
     1141 gcaatgcgga gctcgtccat ctctgggccg ggaccggcca cgcccgcatc agagcgctgc
     1201 cagcggcgga gctgggtcgc cggttgatgg ccgaactgat ggccgcgctc gaaaccagtt
     1261 gaacgtctgt cggtgagggt gggtagcgtg ctacctcgtg cccgatgacg agatcctgct
     1321 gagcgcctcc gccctgacga agaccttcgg cgacttcacg gcggtcgaca gcatcgactt
     1381 cgccgtgcgc aagggcgagt gcttcgggtt tctcgggccc aacggcgccg gcaagtcctc
     1441 gacgatgcgc atggtcgggt gtgtctcgcc agtcagcagc ggtgagctgc ggctgttcgg
     1501 tctggacccc gcgcacgacg ggccggcgat ccgggcgcgg ctcggcagct gccctcagcg
     1561 tgactccctc gacgaggagc tcacggtcca ggagaacctc tgggtctacg gccgctactt
     1621 cgggttgtcc cgcaaggagg ttcgctcacg ggccgccgag ctgctcgact tcgcccagct
     1681 caccgaccgg gccggcgaca aggtcgagcc gctctccggc ggcatgaagc ggcggctgac
     1741 catcgcccgc tcgctcatca actcaccgga gatcctgctg ctcgacgagc ccaccacagg
     1801 cctcgatccg caaggccggc acgtcctgtg ggaccggctc ttccggctca agcggtccgg
     1861 cgtgacgctg gtgctgacca cgcactacat ggacgaggcg gagcagctct gcgaccggct
     1921 ggtggtcatg gaccatgggc ggatcgtcgc cgaggggtcg cctcgcgagc tcatcgacaa
     1981 gtactccacg cgtgaggtgc tcgagctgcg cttcgacgtc gaggaccagc gtgacttcgc
     2041 ggagcgggtg gcggcggtgg gggagcgggt ggagatcctg cccgaccggc tgctggtcta
     2101 caccgatgat ggtgatgcgg ccgctgctgc tgtccatgcc cgcggcatcg agccgttgtc
     2161 gtcgctggtg cgtcgctcga cactggaaga cgtgttcctc catctgaccg gtcggacgct
     2221 ggtggactga tgtcaccctt gccgccgact gaggccactg agcattggga ggaccgtgcc
     2281 acccggggtc cgcgacctgc gctgagcacc cccgaacggg ttctggcggt gtgggagtac
     2341 caccttcggg tctaccgccg gacctggcgt ggctcggtga tctcgcgggc actcatgccc
     2401 ctgctcttcc tgctgtccat gggggtcggg ctcgggtcac tggtcgacca ccgggccggc
     2461 ggcgtgcacg gcgtgcccta cctgatgttc gtggcgccgg cgatccttgc ggtccagacc
     2521 atgtgggtgg ccaacggcga gtcgacctac caggtgctcg ggtacatcaa gtggaacatg
     2581 agctaccacg cccagctggc gacgccgctg accgtgcgcg acgtgctgtc ggggcacttc
     2641 ttggcggtgg cgtgccacct ggtgatgtcc acgtcgttct tcatggtggt cgccgcgttg
     2701 ttcggcggct tccactcctg gtgggccttg ctgtgcctgc cgatcgccat cctgaccggc
     2761 atggccttca gcatcccgat gttcgccttc actgcggtgc aggagggcga caacgggttc
     2821 aacatcctgt tccgctggat catcacgccg atgatgctct tctcgggcac cttcttcccc
     2881 atccagcagc ttcccggctg gatgcagccc atcgcctggg tgacgccctt gtggcacggc
     2941 gtcgaggcct cccgagcggt ggcgagcggc gcggtggcct ggggtccgct gttcggtcac
     3001 cttctcgtgc cgctgctgta tgccgtggtc ggctggtggc ttgccgagcg tgccttcgcc
     3061 aagaggttgg ttccgtgagc gccaccacga ccccgacgtc gtcggccgcg cgcgtggctc
     3121 ggctggtccc catgcccgcc ggagccggcc tggcgcggat gatggtcgag cgcaacatca
     3181 cggcgttccg gcgcggctgg atcgccctgg tcacgggctt cgccgagccg gtgttctacc
     3241 tgttctccct gggcatcggg atcggcgcac tcgtgcacac cgtcaccacc gactcggggc
     3301 gcgtcgtcag ctacgtgcag ttcgtcgcgc cggcgctgct ggcgacctcg gcgatgaacg
     3361 gggccgtctt cgactcgacg ttcaacgtgt tcttcaagct gaagtacgcc cgcctctacg
     3421 acgcggtgct ggccaccccc atgggcccgc gagacattgc cgtcggggag atctcctggt
     3481 cgctgatccg gggcgggatg tactccgccc tgttcctgac ggtggccctg gtgaccgggg
     3541 cggtgacgtc gtggtgggcg ctgttggctc tgcccgcagc cgtgttcatc gggttcgcct
     3601 tcgcggcggc ggggatgttc gcgaccacgt tcatgcggtc gtgggtcgac ttcgactacg
     3661 tgacgctggc gatccagccg atgttcctgt tctcggcgac gttcttcccg ctgtcgacct
     3721 accccgaggc gctgcgatgg ctggtgcagt gcaccccgct ctaccacggc gtcgcgctcg
     3781 agcgggcgct cctactcggg gacgtcggct ggggggtgct cggtcacgtg ctgtacctgc
     3841 tggtgctggg tgggctgggt gtcatcggcg cggcccgtcg gctcgaacgg ctgctgctgt
     3901 cctgaggtca gccgcgaggt cggcgtgtcg cgccagatca ccgctcattt cgaacacacg
     3961 ttcggtagag tcgtacacag gtggagcccc gataggcctt cgtccacagc tcatctgagt
     4021 ggttcaggac gactgtcggt ggcgactcct agcgtctgac ccaacagcgg atactgcaca
     4081 gattctgact gacagggtcg aaggcaggcg cgcccgactc gaccagtgaa agaaggaagc
     4141 gtggcgaaga tggctgcaac caccagctcg aacggcccgg accagaaggc caagtccctg
     4201 gactccgtca tgggccagat cgagaagtcg ttcggcaagg gcgccgtgat gcgcctgggt
     4261 gacgatgtcc gaccgcccat cgaagtgatc cccaccgggt cgatcgcgct cgacatcgcg
     4321 ctcggcatcg gcggcctgcc gcgcggccgg gtcgtggaga tctatggccc ggagtcttca
     4381 ggcaagacca cggtcgcgct gcatgcgatc gccaacgccc agaaggccgg cgggatcgcc
     4441 gcgttcatcg acgccgagca cgctctcgac cctgagtacg ccaagaagct gggggtcgac
     4501 acggacgcct tgctcgtcag ccagcccgac acgggtgagc aggctctgga gatcgccgac
     4561 atgctgatcc gatcgggcgc cctcgacatc atcgtcatcg actccgtggc ggccctggtg
     4621 ccccgcgctg agatcgaggg cgagatgggt gacagccacg tcggcctgca ggcccgcctg
     4681 atgtcccagg ccctgcgcaa gctcaccggc gccatcaaca acaccggcac caccgccatc
     4741 ttcatcaacc agctccgcga gaagatcggc gtcatgttcg ggtcgcccga gacgacgacc
     4801 ggtggaaagg cgctgaagtt ctacgcctcg gtccgcctcg acgtccgtcg catcgagaca
     4861 ctcaaggatg gcaccgaccc ggtcggcaac cggacccgcg tcaaggtggt caagaacaag
     4921 gtgtccccgc cgttcaagca ggccgagttc gacatcctct acggcttcgg catctctcgt
     4981 gagggcggcc tgatcgacat gggcgtcgag cagggcttcg tccgcaaggc
//
LOCUS       DASYFY010000527         3785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_931111, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000527 DASYFY010000000
VERSION     DASYFY010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3785
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931111"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VGN19_10675"
     CDS             <1..364
                     /locus_tag="VGN19_10675"
                     /inference="COORDINATES: protein motif:HMM:NF042625.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6541 family protein"
                     /protein_id="HEV7196395.1"
                     /translation="EIQPTRRQALLLNDFTQLATDPQVRAAAAQLGVEWVYSSAGRIR
                     THDKPEPGLLHLDQQPYLTLVDRVGHASLYRVAWDKLPGGQAQVDRYASTRLSEPGVP
                     GTWQSTSPSPLASPDSVC"
     gene            457..1410
                     /locus_tag="VGN19_10680"
     CDS             457..1410
                     /locus_tag="VGN19_10680"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEV7196396.1"
                     /translation="MYKGATVAAVVPAFKEERHIATVIETMPDFVDHIVIVDDCSPDG
                     TSAAAVATADPRLHLIRHEVNQGVGGAIITAHRAAMDLGSDINVVMAGDAQMDPAYLP
                     ALLDQIVEGYGFAKANRFFSGESFAGMPGHRVFGNVALSFLTKFASGYWHIFDPQNGY
                     TAIRTEVLRRLPLDKVARRYSSENDLLIHLSILDVPVVDVPIPALYATEVSSIRLRSV
                     VPELLSLMFRGFWRRVWWKYMVWSFSPVALLLVAGLVLLVLGLGVGAWLLTVSVGSSS
                     PTAGSVMLAVVPFVLGVQTLLVALQLDIQATPNRPTMRHFS"
     gene            complement(1415..2845)
                     /locus_tag="VGN19_10685"
     CDS             complement(1415..2845)
                     /locus_tag="VGN19_10685"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEV7196397.1"
                     /translation="MTNHTPNEPVPLSDPTDPLDDFFTRERASVQAADADELHWERIV
                     ELGSVRSPRRNVLLSVAAAAAVLVLAIGAGALVNRTNNTPSANLTGSTHPAPAPTSPA
                     RPTGTPSATATASNPRALGPVPSSFTLVSISTARAGYLVALGQVGCGAGRCAALAASS
                     DNGGHWGLLHSFADRGLRVAAAGAPFAAGPSVREVRFASASVGWVFGQSSLRTTDGGQ
                     TWQDYPHPGGQVLALETDGRDVVLTTANGCSAQSCPGPVSVVRAPVSAAAATDVAGTV
                     GGGATVTGAPITWHAGHAYVSPAATPIAGQSAPGPVVVRPDGLHAAGPARCGNGLGGV
                     QLVGPASGSVLFATCAASGAMSHLGYAVLASSDAGLTWRSVSTDALILVDARTVSFAA
                     SDSGTLLAVSGGAPDVHGSMSRSSDGGVTWATPGQAPPLPALGWAWVGAPGGPTFYAI
                     SADGSGSLWRSTDRGQTWEPVAIAGK"
     gene            complement(2842..3408)
                     /locus_tag="VGN19_10690"
     CDS             complement(2842..3408)
                     /locus_tag="VGN19_10690"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEV7196398.1"
                     /translation="MTQRAGLAIGLGGGTVGRAREHHLADADVRVLYDAQYGQLAGWT
                     ARLVGDVELGHDFATEAFARLYRDFDQIDEPRAWLYTVAANLVRDHWRSRGRESRAFQ
                     KVTAGSPVDSAETSASADTLDAATRITVREVVLALPDRLRLVVILYYYADLSVAAVAS
                     RAGKSVGAVKRDLFDARRLMAAQLEGVR"
     gene            3566..>3785
                     /locus_tag="VGN19_10695"
     CDS             3566..>3785
                     /locus_tag="VGN19_10695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196399.1"
                     /translation="MGARQGLTRLSAAGIGVSLMTVLGGPAAAPPAAAASAVAPTPAA
                     IAQAVFNRMSEDQRIGQLFMVGGPASGLG"
BASE COUNT          572 a         1355 c         1306 g          552 t
ORIGIN      
        1 cgagattcag ccgacgcgtc ggcaggcgtt gctgctcaac gacttcaccc agctggcgac
       61 cgatccgcag gtgcgggccg cggcggcgca gctcggcgtg gagtgggtgt attccagtgc
      121 cggcaggatc cgcacccatg acaagcccga gccggggctc ttgcacctgg accagcagcc
      181 ctatctgacc ctggtcgacc gggtcgggca cgcctccctc taccgggtgg cgtgggacaa
      241 gctccccggc gggcaggccc aggtggaccg gtacgcctcg actcgcctgt cggagccagg
      301 agtccccggc acctggcagt cgacgtcccc ctcaccgctc gcctcaccgg acagcgtgtg
      361 ctgaccggcg gcctgacacg cctgcgggaa gcccgctcgg attcgcccct cagcccgtat
      421 cccgcggact gaccgagagc ccacgaaagt cacagcatgt acaagggtgc aacagtcgca
      481 gccgtcgttc ccgcctttaa ggaggagcgc cacatcgcca cggtcatcga gaccatgccg
      541 gacttcgtcg accacatcgt gatcgtggac gactgcagtc ccgatggaac ctcggctgcg
      601 gcggtcgcca cggcagaccc tcggctgcac ctgatccgcc acgaggtcaa ccagggtgtc
      661 ggcggagcca tcatcaccgc tcaccgcgcc gccatggacc tgggttccga catcaacgtg
      721 gtgatggccg gggacgcgca gatggacccg gcctacctgc cggcgctcct ggaccagatc
      781 gtggagggtt acggcttcgc caaggccaac cggttcttct ctggcgagtc cttcgcgggt
      841 atgccgggcc atcgggtttt cggcaacgtg gcgctgtcgt tcctgaccaa gttcgcgtcc
      901 gggtactggc acatcttcga cccgcagaac gggtacaccg ccatccggac cgaggtgctg
      961 cgtcgcctcc ccctggacaa ggtcgcccgt cgctacagct ccgagaacga cctgttgatc
     1021 cacctcagca tcctcgacgt tcccgtcgtg gacgttccca tccccgccct gtacgccacc
     1081 gaggtctcga gcatccgcct gcgctcggtc gtgcccgagc tgctgagcct gatgttccgc
     1141 gggttctggc ggcgggtctg gtggaagtac atggtgtggt ccttctcccc ggtcgcgctc
     1201 ctgctcgtgg ccgggctggt gctgctcgta ctcggcctgg gcgtgggtgc ctggctgctc
     1261 accgtctcgg tgggaagctc ctcgccgacc gcgggctcgg tgatgctcgc ggtggtgccg
     1321 ttcgttctcg gcgtgcagac cctgctcgtc gccctgcagc tcgacatcca ggccactccg
     1381 aaccgcccga ccatgcggca cttctcgtaa gacgtcactt gccggcgatg gccacgggct
     1441 cccacgtctg ccctcggtcg gtgctgcgcc acaggcttcc cgacccgtcc gcgctgatgg
     1501 cgtagaaggt ggggccgccc ggtgcgccga cccaggccca acccagggcc ggcagcggtg
     1561 gggcctgtcc gggggtcgcc caggtgacgc cgccgtcgct gctgcgcgac atcgagccgt
     1621 gcacatccgg ggctcccccc gagaccgcga gcagggtgcc cgagtcagac gccgcgaacg
     1681 agacggtccg cgcatcgacc aggatcaggg cgtcggtgct caccgaacgc cacgtgagac
     1741 cggcgtcgct gctggcgagc acggcatacc ccagatggct catggcccca ctggccgcgc
     1801 aggtcgcgaa caggaccgac cctgaggcgg gtcccacgag ctgcacgccg ccgaggccgt
     1861 tgccgcaccg cgcaggtccg gccgcgtgca ggccgtccgg gcggacgacg accggcccgg
     1921 gggcgctctg gccggcgatc ggggtcgcgg cgggggagac gtacgcgtga ccggcgtgcc
     1981 aggtgatcgg ggcgccggtg acggtcgcgc caccgccgac cgttcccgcg acatcggtgg
     2041 ccgcggcggc actcaccggg gcgcgcacca cgctgaccgg accggggcag ctctgggcgc
     2101 tgcacccgtt ggccgtcgtg agcaccacat cgcgtccatc ggtctccagg gccaggacct
     2161 ggccaccagg atgcgggtag tcctgccagg tctggccacc gtcggtggtc cgcagggagc
     2221 tctggccgaa cacccagccg accgaggcgc tggcaaagcg cacctcgcga accgagggcc
     2281 ccgcggcaaa cggtgcgcca gctgccgcga ctcgaaggcc gcgatcggcg aagctgtgca
     2341 gcaaccccca gtgaccaccg ttgtccgacg aggcagccag cgcagcgcag cgacccgcgc
     2401 cacagccgac ctgcccgagc gcgacgagat agcccgcgcg cgccgtcgag atcgagacca
     2461 gcgtgaagga gctggggacc gggcccaggg cgcgagggtt cgaggccgtc gcggtggccg
     2521 acggtgtccc ggtgggtcgg gctggcgagg tcggcgcagg ggccgggtgg gtggacccgg
     2581 tgaggttggc cgagggagtg ttgttcgtgc ggttcaccag agcaccagca ccgatcgcca
     2641 ggaccagcac cgccgctgct gccgccaccg atagcaagac gttccgtcgc gggctcctga
     2701 cgctgccgag ctcgacgatg cgttcccagt gcagctcgtc agcatcggcg gcctggaccg
     2761 aggcgcgttc gcgcgtgaag aagtcgtcca acggatcagt cgggtcagac aggggcaccg
     2821 gctcgttcgg ggtgtggttg gtcatcggac gccctccagc tgggccgcca tgaggcggcg
     2881 cgcatcgaac aggtcacgct tgactgcgcc gaccgactta ccggcgcggg aagcgaccgc
     2941 cgccaccgac agatccgcgt agtagtagag gatcacgacc agtcgcaggc ggtccggcaa
     3001 cgccagcacc acctcccgga ccgtgatcct ggtggcggca tcgagggtgt cggcggaggc
     3061 cgaggtctcg gccgagtcga cgggggagcc ggccgtgacc ttctggaacg cccggctctc
     3121 gcgaccccgc gagcgccagt ggtcacgaac caggtttgcc gccacggtgt acaaccacgc
     3181 cctgggctcg tcgatctggt cgaagtcgcg gtacaggcga gcgaacgcct cggtcgcgaa
     3241 gtcatgtccg agctccacat ccccgaccag acgcgccgtc cacccggcca gctggccgta
     3301 ctgggcgtcg tagagaaccc gcacgtccgc gtcggccagg tgatgttcgc gtgcccgtcc
     3361 caccgttcct cccccaagac cgatggccag tcccgctcgc tgcgtcatgt cagtatgacg
     3421 ccgcaccagc cgatctggtt ggatacccga cggcacgcgg gggtctacca accgagcgtg
     3481 ccgctgcgtc gtcacagggg cgaccgacaa cggcaccgcg acaagacaac ggcaccgcga
     3541 cagacaacgg cacggggagg ccaccatggg cgcacgacag ggtctgaccc ggctgagcgc
     3601 ggccggcatc ggggtgagtc tgatgacggt cttgggtggc ccggcagcgg cacctccagc
     3661 cgccgcggca tccgccgtgg ctccgactcc ggcagccatc gcgcaggcgg tcttcaaccg
     3721 gatgagcgaa gaccagcgca tcggtcagct gttcatggtg ggcggtcccg cctccggcct
     3781 cggct
//
LOCUS       DASYFY010000528         6418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_879013, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000528 DASYFY010000000
VERSION     DASYFY010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6418
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_879013"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..919
                     /locus_tag="VGN19_10700"
     CDS             <1..919
                     /locus_tag="VGN19_10700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEV7196400.1"
                     /translation="LEHLLRHRDVAKLKSTVDGLLKAVGPDGRIHTTFYQTVAATGRL
                     SSTDPNLQNIPIRTDAGRRIREVFVVGAGFESLMSADYSQIEMRIMAHLSGDEGLIEA
                     FRSGEDLHRLVGSRVFSVAPEDVTSAMRSKVKAMSYGLAYGLSAFGLSKQLTISTGEA
                     QGLMDEYFARFGGVKDYLDSVVAEARGTGYTQTMLGRRRYLPDLTSDNRQRREMAERM
                     ALNAPIQGSAADIIKVAMLRVDGALRAAGARSRQLLQVHDELVLEIAPGERSDVEALV
                     REQMGAAIELDVPLDVSVGVGRSWHDAAH"
     gene            1009..2523
                     /locus_tag="VGN19_10705"
     CDS             1009..2523
                     /locus_tag="VGN19_10705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196401.1"
                     /translation="MPKPGLRRRSALIVAVGSVLAVGACSSQSAVSSRVDQERIAAPA
                     SLTKACTDTLCKGERHGAPFEIRLPQKWNGTLLLWSHGYRAAATVPLSPLDPSSTEPP
                     VRTPEVALSDATAQELLGKGYALAGSANSANGWAVQDSVAANEDLYAYFSKTFGTPNR
                     VYVWGVSLGGLSTQVLAEKHPDWVDGSAPMCGALAGTNLNLDLALDVAYGVKTLFDPS
                     LKLTGFASNDEAVASWEHAAKALVTAAKSGSPNAIAGLLTLKAITGAADKTKDQDGST
                     TTSTGTAIVESVLNALGYGTFGRYELEQRVGGNPSGNVGADYGARLTDADRALINAAA
                     PGKLDGVLAKLANGARVTPDPTARAKADGLGNPSGRIAVPTLTMHTVDDPLVLAANEN
                     VYGRRADAAKSTGELAGFLTRPPVKYADAPYGAGHCNFTTQEQVGVIDLLDRWVRNGS
                     YPASGAIASELGFSVDGSQGSNTPTAIDNGTATTGYDPSALPPAWPNPQAAIVP"
     gene            complement(2520..3281)
                     /locus_tag="VGN19_10710"
     CDS             complement(2520..3281)
                     /locus_tag="VGN19_10710"
                     /EC_number="1.1.1.333"
                     /inference="COORDINATES: protein motif:HMM:NF005912.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decaprenylphospho-beta-D-erythro-pentofuranosid-
                     2-ulose 2-reductase"
                     /protein_id="HEV7196402.1"
                     /translation="MLDALGSPQTVLVLGASSDIAQASLAALSRKGRLARVVLAGRPG
                     PGRDGALEATRQLVGDGSVTAIDFDATQVADHAATVSTVFAEGDVDVVVLAFGVLPDE
                     ATAADPVAAAAVVTTNFTGAVSSLTAVATAMRAQGHGTIVVMSSVAGERPRRSNYLYG
                     STKAGLDAFATGLGDDLAGTGVSVVVVRPGFVRTSMTTGLQDAPLAVDATDVADAIAA
                     AVGGPSRTVWVPGPMRIVMSVLRHLPRAVFRRLPI"
     gene            complement(3275..4630)
                     /locus_tag="VGN19_10715"
     CDS             complement(3275..4630)
                     /locus_tag="VGN19_10715"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEV7196403.1"
                     /translation="MSTATEWLTGWGRATRTPAQVSHEASTAAVAELVRTGLDGGLPR
                     GLLARGLGRAYGDAALNSGGRVVSTDALRGIGEITPQGVVEAQAGVSIEDLLAYAVPR
                     GWFVPVTPGTRHVSLGGALAADVHGKNHHRDGSLGQHVERLELVDGTGEVRTLSPADA
                     AYGAVVGGMGLAGIVTRIWLRMRPISTASLRVHTTRTADLDGTMAALEAADTEHRYTV
                     AWLDTLATGSSLGRGVLTAGEHADAGEVVGGQRPTALADYGTGRVLPGPPWAPAGLLS
                     SLSMRLFNEAYYRAAPAHPVVTIESVASFFHPLDIVRGWNRMYGRPGFLQYQFAVQDA
                     GCIRTVLELFARERVPGFLAVLKRFGPSSGLPLSFPTPGWTLAMDMPATRDLASVLDQ
                     ADDLVAAHGGRLYLAKDSRMKPELLPRMYPGLDAWREQRELLDPHHLFVSDLSRRLHL
                     C"
     gene            complement(4627..5484)
                     /locus_tag="VGN19_10720"
     CDS             complement(4627..5484)
                     /locus_tag="VGN19_10720"
                     /EC_number="2.4.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013117600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decaprenyl-phosphate phosphoribosyltransferase"
                     /protein_id="HEV7196404.1"
                     /translation="MIRGAVRLMRPRQWSKNVLVGAAPLAAGTILSGPTLLHTALAFA
                     AFCLASSATYCLNDVMDAEADAKHPTKRRRPVASGQISKIQALVLALVLAIVAVALPG
                     PLKFHLIVLGYLVLTASYSLWLKHRPVLELGLVSGGFLLRAMAGGLATELPLSKWFLI
                     VTAFGSLFMVTGKRLSELISAEHASAIVRRSLTFYPLSYLRMVLGVSAAVTITGYCLW
                     AFEVGAAHRGGVWSAISVAPFVLGLMRYGLDSDLGNVEEPEEVVRRDTTLQILGLLWL
                     VTFSLGVAL"
     gene            5587..>6418
                     /locus_tag="VGN19_10725"
     CDS             5587..>6418
                     /locus_tag="VGN19_10725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196405.1"
                     /translation="MAALVTAVVGALVVLGPALRPGYVLVGDMVFVPRLRISGDLIGL
                     SSATPRAVPSDAVVALLSIVLPGQVVQKLVLFAVLVAAGAGAGLVLRVGVIGTAAATI
                     AAVWNPYVAERLAAGQWAVLVGYAALPWVLRGAWEWGAVLYGDSATSPRRAWLRVAVP
                     VVLGSLGGAPAWFLVVLVATVGCVVGARGRPPSLGGGLLGGLLVALALPWAVPALIRP
                     GGTAANGAGAVFAPRADTPFGLLLSVLTGGGIWNADVVPAGRDTVPGALASLAVLVLG
                     V"
BASE COUNT          979 a         2195 c         2323 g          921 t
ORIGIN      
        1 gctcgaacac ctgctgcgac accgcgacgt ggccaagctc aagtccactg tggacggcct
       61 gttgaaggcg gtcggcccgg acggcaggat ccacaccacc ttctaccaga ccgtcgcggc
      121 gaccggccgg ctgtccagca ccgaccccaa cctccagaac atcccgatcc gcaccgacgc
      181 cgggcgacgg atccgcgagg tcttcgtcgt cggggccggc ttcgagtcgc tgatgtcagc
      241 ggactacagc cagatcgaga tgcggatcat ggcgcatctg tccggcgacg aggggctgat
      301 cgaggcgttc cgttctggag aggacctgca ccgcttagtc ggctcgagag tcttctcggt
      361 cgcacccgag gacgtcacct cggcgatgcg gtccaaggtc aaggccatgt cgtacgggtt
      421 ggcctacggg ttgtcggcct tcggcctgtc caagcagctg accatttcca ctggtgaggc
      481 tcagggcctc atggacgagt acttcgcccg gttcggcggg gtcaaggact acctcgactc
      541 ggtcgtcgcc gaggcgcgcg gcaccggtta cacccagacc atgctcgggc gccggcgcta
      601 tctgccggac ctgacctctg acaaccgaca gcgccgtgag atggcggagc ggatggccct
      661 gaacgcaccg atccaggggt cggcggccga catcatcaag gtcgcgatgc tgcgggtcga
      721 cggggccctg cgggccgccg gcgcccggtc tcggcagctg ctccaggtcc acgacgagct
      781 cgtcctggag atcgccccgg gcgagcgcag cgatgtcgag gcgctggtgc gcgagcagat
      841 gggtgcggcg atcgagctgg acgtgccgct ggatgtcagc gtgggcgtcg gccgctcctg
      901 gcacgacgcc gcgcactgaa cgagccgagc actgaacgac cggtcgcgcg gcacgccaaa
      961 ctcgctgaac tcactcggcg gcccaagccc tgtgccatag tgccgaacat gccaaaaccg
     1021 gggttgcgtc gtcgttccgc gctgatagtc gcggtgggat ctgtgctggc ggtgggggcg
     1081 tgctcgtcgc agagcgcggt cagctcccgg gtcgaccagg agcggatcgc cgcgccggcc
     1141 tccctcacga aggcctgcac cgacactctc tgcaagggcg agcgccacgg cgccccgttc
     1201 gagattcggc tgccacagaa gtggaacggc accttgttgc tctggtcgca tggctaccgg
     1261 gccgcggcga cggtgcctct cagcccactt gacccgtcgt cgaccgagcc gccggtgcgg
     1321 actcccgagg tggccttgtc cgacgcaacg gcccaggagc tgttgggcaa gggctacgcg
     1381 ctcgcgggtt cggccaactc cgcgaatggg tgggccgtcc aggacagcgt tgcggccaac
     1441 gaagatctct acgcgtactt ctcgaagacc ttcggcaccc cgaaccgggt ctatgtctgg
     1501 ggcgtttcgc tcggcggcct gtccacccag gtgctcgccg agaagcaccc ggactgggtg
     1561 gacggctcgg caccgatgtg cggcgcactg gctggcacca acctcaacct cgacctggcc
     1621 ctggacgtcg cctacggcgt caagacgctg ttcgacccga gcctgaagct cacggggttc
     1681 gcgtccaacg acgaggccgt cgccagctgg gagcacgccg ccaaagccct ggtgaccgcc
     1741 gcgaagagcg gatcgcccaa tgccatcgcg gggctgctga cgctcaaggc catcaccggt
     1801 gcggcggaca agaccaagga ccaggacggc agcacgacga cctccaccgg cacggccatt
     1861 gtcgagagcg tgttgaacgc cctcggctac ggcacgttcg gccggtacga gctggagcag
     1921 cgcgtgggcg gcaacccctc cggcaacgtc ggagccgact acggcgcgcg gctcaccgac
     1981 gccgatcggg cgctgatcaa cgcggccgca ccgggcaagc tcgacggcgt acttgccaag
     2041 ctggcgaacg gtgccagggt gaccccggac ccgaccgctc gggcgaaggc cgatggcctg
     2101 ggtaacccca gcggccgtat cgcggtgccc accctgacca tgcatacggt cgacgacccc
     2161 ttggtgctgg ccgcgaacga gaacgtctac ggcaggcggg cggatgcagc gaagtcaacc
     2221 ggtgagctgg ccgggttcct gacccggccg ccggtgaagt acgccgacgc gccgtacggt
     2281 gccggccact gcaacttcac cacccaggag caggtcggcg tgatcgacct gctggaccgt
     2341 tgggttcgca acggcagcta ccccgcgtcg ggagcgattg cgtccgagct cggtttctcg
     2401 gtcgacggga gccagggctc caacaccccg accgcgatcg acaacggcac ggcgaccacg
     2461 ggctatgacc ccagcgcgct gccgccggcg tggccgaacc cgcaagccgc catcgtcccc
     2521 tagatgggta ggcgtcggaa cactgcgcgg ggcaggtggc gcagtaccga catgacgatg
     2581 cgcatcgggc cggggaccca cacggttcgg ctcggacctc cgaccgcggc agcgatggcg
     2641 tcggcgacgt cggtggcgtc caccgcaagc ggagcgtcct gcaggcccgt ggtcatagag
     2701 gtccggacga atccggggcg cacgaccacg acgctgaccc cggtgcccgc caggtcgtcg
     2761 ccgagaccgg tcgcgaaggc gtcgagaccg gccttggtgg agccgtagag gtagttcgac
     2821 cggcgtgggc gctcgcccgc gaccgaggac atcaccacga tcgtgccgtg accctgggcc
     2881 cgcatggccg tcgcgaccgc ggtcaacgag gagaccgccc cggtgaagtt cgtggtgacc
     2941 actgcggcgg ccgcgacggg gtccgcggcg gtggcttcgt ccgggagtac cccgaacgcc
     3001 aggaccacca cgtcgacgtc gccctcggcg aacaccgtgg acaccgtggc ggcatggtcg
     3061 gccacctgtg tcgcatcgaa gtcgatggca gtgaccgacc cgtcacctac cagctggcgg
     3121 gtggcctcga gcgcaccgtc gcgacccggg ccggggcgac cggccaggac cacgcgggcc
     3181 agcctgccct tgcgggacag ggccgccagg ctggcctggg caatatcgga tgaggcgccc
     3241 aggaccagaa cggtctgggg ggagccgaga gcatctagca caggtgcagc cttcgagaga
     3301 ggtcggacac gaacaggtgg tgggggtcga gcagctcgcg ctgctcacgc caggcgtcca
     3361 gcccggggta catccgcggc aacagctcgg gtttcatccg gctgtccttg gccaggtaca
     3421 ggcggccacc gtgcgcggcc accaggtcgt cggcctggtc gaggacgctc gcaaggtcgc
     3481 gcgtggcggg catgtccatg gccaaggtcc agccaggggt ggggaaggac agcgggagcc
     3541 cggagctcgg cccgaaccgt ttgaggacgg ccaggaagcc gggcactcgc tcgcgggcga
     3601 acagctccag cacggtgcga atgcacccgg catcctggac ggcgaactgg tactgcagga
     3661 agcccggtcg tccgtacatc cggttccagc cgcgcacgat gtccagcggg tggaagaagg
     3721 aggcgaccga ctcgatcgtc acgactgggt gcgccggtgc cgcgcggtag tacgcctcgt
     3781 tgaacaaccg catgctcagc gaggagagca ggccggcggg ggcccacggc ggaccgggga
     3841 gcacgcgtcc cgttccgtag tccgcgagcg cggtcggccg ctggccgcca accacctcac
     3901 ccgcgtcggc gtgttcgcct gcggtgagca cgccgcggcc caaggacgat cccgtggcga
     3961 gggtgtccag ccaggccacc gtgtaccggt gctcggtgtc ggcggcctcc agggcggcca
     4021 tcgtgccgtc gaggtccgcc gtccgggtgg tgtgcacgcg caggcttgcg gtggagatgg
     4081 ggcgcattcg cagccagatc cgcgtgacga tcccggccag ccccatgccc ccgaccacgg
     4141 caccgtatgc cgcgtctgcg ggcgacagcg tgcgcacctc gcccgttccg tcgaccagtt
     4201 cgagccgctc gacgtgctgg ccgaggctgc cgtcgcggtg gtggttcttg ccgtggacgt
     4261 ccgccgccag cgcaccgccg agggagacgt gccgggtgcc gggagtgacc gggacgaacc
     4321 agccgcgcgg cacggcatac gccaagaggt cctcgatgct gacgccggcc tgggcctcga
     4381 ccacgccctg gggggtgatc tcgccgatgc cgcgcagcgc gtcggtgctc acgactcgtc
     4441 caccggagtt gagggcggcg tcaccgtagg cccgcccgag gccgcgcgcg agcagaccgc
     4501 gggggagtcc gccgtcgagg ccggtacgca ccagctcggc gaccgcagca gtggacgcct
     4561 cgtggctgac ctgagccggg gtgcgggtgg cccgccccca gccggtgagc cattcggtgg
     4621 cagtgctcac agggctactc ccagagagaa ggtgacgagc cagagtaggc cgaggatctg
     4681 cagggtggtg tcccggcgga cgacctcctc gggctcttcg acgttgccga ggtcgctgtc
     4741 caggccgtac cgcatcaacc cgaggacgaa cggtgccacg ctgatcgcgg accagactcc
     4801 gccacgatgg gccgcgccca cctcgaaggc ccacaggcag tagccggtga tggtgacggc
     4861 ggcgctgacc ccgagcacca tgcgcagata ggacagcgga tagaaggtga ggctgcgtcg
     4921 gacgatggcg ctggcgtgct cggcggagat cagctcggag agccgcttgc cagtgaccat
     4981 gaacaacgac ccgaacgcgg tgacgatgag gaaccacttc gacagcggca gctcggtggc
     5041 gaggccgccc gccatggcgc gaagcaggaa gccccccgag accagcccga gctcgaggac
     5101 cgggcggtgc ttgagccaga ggctgtagga ggcggtcagg acgaggtacc ccaggacgat
     5161 cagatggaac ttcagcggcc cggggagcgc caccgccacg atggccagga ccagtgccag
     5221 gaccagcgcc tggatcttgc tgatctggcc ggaggccacc gggcggcgac gcttggtggg
     5281 atgtttggcg tcggcctcgg catccatgac gtcgttcagg cagtaggtgg cgctgctcgc
     5341 caggcagaaa gcggcgaagg ccagtgccgt gtgcagcagg gtcgggccgc tgagaatggt
     5401 tcccgcggcg aggggcgcgg caccgaccag aacgttcttg gaccactgtc gcggacgcat
     5461 gagtcgtact gcgccgcgga tcacgcccgc caccctagcg tttggcataa ggtccgatcg
     5521 atgaatgcgc gacaacggcg cgccccgacg ggggcccaca ggatcgcgcc cccgagcgcc
     5581 cgcacgatgg ccgctctcgt gactgcggtg gtcggcgctc tcgtcgtcct gggtccggcc
     5641 cttcgtcctg ggtacgtcct cgtgggggac atggtcttcg tcccacggct gaggatcagc
     5701 ggtgacctca tcggtttgtc ctccgcgacg ccgcgagccg tcccgtcgga cgcggtcgtc
     5761 gcgctgctca gcatcgtgct gcccggtcag gtggtccaga agctcgtgct gttcgccgtg
     5821 ctcgtggccg cgggagcggg tgctggcctg gtccttcggg tgggggtcat cgggacagcg
     5881 gcagccacga tcgccgctgt ctggaacccc tacgtggccg agcggctcgc cgccggacaa
     5941 tgggcagtgc tggtcgggta tgccgcgctg ccctgggtcc tgcgcggcgc ctgggagtgg
     6001 ggggcggtgc tgtacggcga cagcgccacc tcgccgcgcc gcgcctggtt gcgggtcgcg
     6061 gttccggtgg tcctgggatc gctgggggga gccccggcct ggttcctggt cgttctggtc
     6121 gccacggtgg gttgcgtcgt gggggcccgc ggccgccccc cgtccctcgg cggtggactt
     6181 ctcggcggtc tgctcgtcgc gctggcactg ccctgggcgg tccccgcgct gatccgtccc
     6241 ggcggcaccg ccgccaacgg cgcaggggcc gtgttcgcgc cgcgcgcaga tacccccttc
     6301 ggcctcctgc tgagcgtgct gaccggcggg gggatctgga acgcggacgt cgtgcccgcc
     6361 ggtcgcgaca cggttcccgg ggccctggcc tcgctcgcag tgctggtact cggcgtga
//
LOCUS       DASYFY010000529         7726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_90475, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000529 DASYFY010000000
VERSION     DASYFY010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7726
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90475"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VGN19_10730"
     CDS             complement(<1..306)
                     /locus_tag="VGN19_10730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEV7196406.1"
                     /translation="MREGHLDLDHQTVVNAWNWFAGRPLMVVVTIVGALILRWALIRS
                     IGRVVDVALAKSAARQSAEPSRARRVLAQATGAAHERHQQRTLTMASLLRSIVTLVVL
                     "
     gene            complement(299..2848)
                     /gene="pepN"
                     /locus_tag="VGN19_10735"
     CDS             complement(299..2848)
                     /gene="pepN"
                     /locus_tag="VGN19_10735"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HEV7196407.1"
                     /translation="MPGKNLTRDEAVARAAVVSVDHYDVELDLTTSDSTFRSTTTVTF
                     SSHQPGAGTFVDLIAPSVQAITLNGERLDPAAHFDGTRITIPATAEQNTLTVEATAAY
                     MNSGEGLHRFVDPVDDEVYLYSQFEVADTRRMFTVFEQPDLKATYSFTITAPSHWQVV
                     SNSPTPEPTPVRDGVAIWAFAATPRMSCYITALVAGPYAVVRDEVSSRRGTVPLGIFC
                     RQSLLEHLDADNIFDCTKRGFAFFENEFDCAYPFEKYDQLFTPEYNMGAMENAGAVTI
                     NEVYVFRAKVTEALVERRAVTILHELAHMWFGNLVTMKWWNDLWLNESFAEWASTTCQ
                     AEATQWRTAWTTFSAAEKSWAYRQDQLSSTHPIVAPIRDLEDVEVNFDGITYAKGASV
                     LKQLVAYVGREPFVAGLRAYFAKHAWGNTTLEDLLSELESNSGRDLGTWSKVWLETAG
                     VNTLRPVIETDDQGLVSAATIEQSYAEGFETLRPHRLAVGLYEVRDGQLVRTERFELD
                     VDGESTPLPQLIGRPAPDLLLVNEDDLAYAKIRLDERSLATALAYPLGFQDSLPRALV
                     LGAAWDMTRDAEIAGRDFARLVLASLPGEKDSTLLKTVLGQLQSTVYLYVSPEHRDEA
                     LAETTSALRGLAESAEPASDAQLQLVSAYAALQRGGDDAAYVRGLLEGTQSLPGLAID
                     TDLRWALLTSLAACGAATEEEIAAEQARDNTATGRERAARALAARPTPEAKARAWSEG
                     VDGDSLTNTVVEAVGHGFAQALDPEVLRPYIVTYHDALLEVWQSRTHAIAEAILVSYY
                     PTLLADHELLNASQQWLDSHPDAPAGLVRLVAENRDGIGRALRAQARDADA"
     gene            2956..3582
                     /locus_tag="VGN19_10740"
     CDS             2956..3582
                     /locus_tag="VGN19_10740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEV7196408.1"
                     /translation="MTSDKTAVSRTSAEFWFDPLCPWAWMTSRWMLEVERVRPVEVTW
                     SVMSLAVLNEGRELPESYREMMDLAWGPVRVIIAARELYGDKVIRPLYDAMGSRIHLG
                     GERDYAAVLVPALEEVGLDTSLARFADSDEQDELLRASHQRAIDLVGDDVGTPVISVD
                     GHTFFGPVVSPAPKGEAAGRLWDGCVLVAGTPGFFELKRSRTVGPIFD"
     gene            3613..4080
                     /locus_tag="VGN19_10745"
     CDS             3613..4080
                     /locus_tag="VGN19_10745"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase"
                     /protein_id="HEV7196409.1"
                     /translation="MRVHIGGDHAAYDLLGELVSFLKAEGHEVTNHGPHAYDAEDDYP
                     VFVLRAAEAVAADPQSLGVVLGGSGNGEQMAANKVSGIRAALCYNEELATLARQHNNA
                     QVIAIGARMTAVEEAKAMVAAFLATPFSQAPRHQRRLDMVSAYEQDGSLPPLE"
     gene            4229..5323
                     /locus_tag="VGN19_10750"
     CDS             4229..5323
                     /locus_tag="VGN19_10750"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEV7196410.1"
                     /translation="MDLDRTVLARRSLMSRVQRNRSRWMRWHDWGTAISVVAVTAILG
                     WAMSAWPAIVPFSAYIPVAVVAGLFLSPRVLALVDTCILFAGATTILQRVPMASLYVA
                     YGVLATVMIIMFWVATSRARLGVQGNLGETMLVDLRDRLRTQGELPDLPPDWGAELSV
                     LSAYGDSFSGDFVVTSKTGHTLELALVDVSGKGIAAGTRSLLLSGAFGGLLGSMSLDR
                     FLPAANSYLLRQNWDEGFATAAHAVIDLETGEFSLGSAGHPPPVRFSAGSGRWEILEG
                     DEGPVLGVTEGLAFPRTRGVLGRGDALLLYTDGVIETRNRDLLDGIDRMLGTAERMIG
                     DGFEGMAAKMCTAARAGESDDRAAVLVWRR"
     gene            complement(5358..5852)
                     /locus_tag="VGN19_10755"
     CDS             complement(5358..5852)
                     /locus_tag="VGN19_10755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4395 domain-containing protein"
                     /protein_id="HEV7196411.1"
                     /translation="MRISRFPNIVDDVSVRLIAGVVLVLAVAALAFHQWWLYAVLALD
                     FVLRSGWGPSASPVARFVQRFVRPRVSQPPRYTAGPPKRFAAAIGAVLTTAAAILWLA
                     GTTLPVVAIGLVMVVFPALESVGGICVGCIVFGWLMRLGVIPESVCVECANINRRVAS
                     GTPA"
     gene            5892..6557
                     /gene="trmB"
                     /locus_tag="VGN19_10760"
     CDS             5892..6557
                     /gene="trmB"
                     /locus_tag="VGN19_10760"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEV7196412.1"
                     /translation="MADHVRSYNARRGRLSPLNMQRLEVLGARAQLPEGSLDPKAAFG
                     RVAPVVVEVGCGHGAAAISYAQAHPEHDVVAVDVFPPALARMLAEADRRGLTNLWMHR
                     GDAIPLLQDRVAAASLAAVHLFFPDPWPKPRHAKRRFVSPDTLNLVADRLEPGGRLLV
                     ATDHEVYAAHARSALAAQHRFTVIEGDRPSWRPHDGFEAKGLAAGRTVTEFRATLPET
                     TST"
     gene            6720..>7726
                     /locus_tag="VGN19_10765"
     CDS             6720..>7726
                     /locus_tag="VGN19_10765"
                     /inference="COORDINATES: protein motif:HMM:NF020498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase domain-containing protein"
                     /protein_id="HEV7196413.1"
                     /translation="MPMSIRLVRTALTTAALVALAQPNVVMPAEAASGTAPVTHPAVH
                     GPTHRVSYRGVALQVPTAWPVVDLRANPHACVRLDENAVYVGEPGSQQDCPAHVVGHA
                     DTIWMHGSDGAGAGLPSSRPAKVGALAARVGTDPTGHDTTVQFSHQGVQVETSWASDS
                     RTVESALSTATASSTPAAPSSSPVTPSPAPAALSSARSTLDVSDAALVSATPTGGSTY
                     TGMGFDTCAAPTASTMRSWLSSPYRSVGVYIGGSMRACPDGNLNASWVNTVTSMGWGL
                     QPIYVGPQAPCVYQSGLATITASQAAAQGTANADDAIAKAQNFGMGAGTPIYYDMEAY
                     NT"
BASE COUNT         1139 a         2637 c         2735 g         1215 t
ORIGIN      
        1 caggaccacc aacgtgacga tgctgcgcag caacgaggcc atcgtcaggg tccgctgttg
       61 gtgcctttcg tgggcggcgc cggtcgcctg ggccagcacg cggcgggcgc ggctcggctc
      121 ggcggactgg cgcgccgcgg acttggccag cgccacgtcc acgacccgcc cgatggaccg
      181 gatcagagcc cagcgcagga tcagtgcccc gacgatggtc acgacgacca tcagtggccg
      241 accggcgaac cagttccagg cgttgacgac ggtctggtgg tccaggtcga ggtgcccctc
      301 acgcatcggc atccctcgcc tgcgcgcgca gggcccggcc gatcccgtcg cggttctcgg
      361 cgacgaggcg gaccagaccg gcgggcgcgt cgggatggct gtcgagccac tgctgcgagg
      421 cgttcagcag ctcgtggtcg gccagcagcg tcgggtagta cgacacgagg atcgcctcgg
      481 cgatggcgtg ggtccgcgac tgccagacct ccaggagggc gtcgtggtac gtgacgatgt
      541 agggccgcag cacctcgggg tccagggcct gggcgaaccc gtgtccgacg gcttcgacga
      601 ccgtgttggt gagcgagtcg ccgtccactc cctcggacca cgcgcgtgcc ttggcctcgg
      661 gggtcggccg ggcggcgagt gccctggccg cgcgctcgcg cccggtggcg gtgttgtcgc
      721 gagcctgctc cgcggcgatc tcctcctcgg tggccgcgcc gcaggcggcc agcgaggtga
      781 gcagcgccca gcgcagatcg gtgtcgatcg ccaggcccgg caggctctgg gtgccctcca
      841 agagcccgcg cacgtatgcc gcgtcgtcgc caccgcgttg cagcgcggca tacgcgctga
      901 cgagctggag ctgggcatcg ctggcgggct cggcggactc ggccagacca cgcagggcgg
      961 aggtcgtctc ggcgagggct tcgtcccggt gctcggggga cacgtacagg tagaccgtcg
     1021 actgcagctg gccgagcacg gtcttgagca gcgtcgagtc cttctcgccc gggagcgagg
     1081 ccagcacgag ccgggcgaag tcgcggcccg cgatctcggc gtctcgggtc atgtcccagg
     1141 cggcgccgag gacgagtgcc ctgggcaggc tgtcctggaa gccgagcggg taggccagcg
     1201 ccgtcgccag tgagcgctcg tcgagccgga tcttggcgta cgcgaggtcg tcctcgttga
     1261 ccagcagcag gtcaggggcg gggcgtccga tgagctgcgg gagcggggtg gactcgccgt
     1321 cgacatcgag ctcgaaccgc tcggtgcgca cgagctgtcc gtcgcgtacc tcgtagaggc
     1381 cgaccgccag ccggtgcggg cgcagcgtct cgaacccctc ggcatagctc tgctcgatgg
     1441 tcgcggcgct gaccagaccc tggtcgtcgg tctcgatcac cggacgcagg gtgttgaccc
     1501 cggcagtctc gagccagacc ttggaccagg tgccgaggtc gcggcccgag ttgctctcga
     1561 gctcgctgag caggtcctcg agcgtcgtgt tgccccaggc gtgcttggcg aagtaggcgc
     1621 gaaggcccgc gacgaacggc tcgcgcccca cgtaggccac cagctgcttc agcaccgacg
     1681 cgcccttggc gtaggtgatg ccgtcgaagt tgacctcgac gtcctcgaga tcacggatcg
     1741 gcgcgacgat cgggtgggtc gaggacagct ggtcctggcg gtaggcccag gacttctcgg
     1801 ccgcgctgaa ggtcgtccag gcagtgcgcc actgggtggc ctcggcttgg caggtcgtcg
     1861 acgcccactc ggcgaacgac tcgttgagcc acaggtcgtt ccaccacttc atggtgacga
     1921 ggttgccgaa ccacatgtgc gcgagctcgt gcaggatagt caccgcacgt cgctcgacca
     1981 gggcctcggt gaccttggcg cggaacacat agacctcgtt gatggtcacg gccccggcgt
     2041 tctccatggc gcccatgttg tactcgggcg tgaagagctg gtcgtacttc tcgaacgggt
     2101 aggcgcagtc gaactcgttc tcgaagaagg cgaaaccacg cttggtgcag tcgaagatgt
     2161 tgtcggcgtc gaggtgctcg agcagcgact gacggcagaa gatgcccagc ggcaccgtgc
     2221 cccgtcggga agagacctcg tcgcgcacca cggcatacgg cccggccacc agcgcggtga
     2281 tgtaacagga catccgcggg gtggcggcga acgcccatat cgcgaccccg tcgcggaccg
     2341 gggtcggctc cggggtgggg gagttcgaga cgacctgcca gtgcgacggc gcggtgatgg
     2401 tgaacgagta cgtcgccttg agatccggct gctcgaagac cgtgaacatc cgacgggtgt
     2461 cggcgacctc gaactgggag tagaggtaca cctcgtcgtc gaccgggtcc acgaagcggt
     2521 gcagaccctc accgctgttc atgtatgccg cggtggcctc gacggtgagc gtgttctgct
     2581 cggccgtggc ggggatcgtg atccgcgtcc cgtcgaagtg ggcggccggg tcgagccgct
     2641 cgccgttcag ggtgatggcc tgcaccgacg gggcgatcag gtcgacgaag gtgcccgctc
     2701 ccggctggtg gctcgagaag gtcaccgtcg tggtgctgcg gaacgtcgag tccgaggtgg
     2761 tgaggtccag ctcgacgtcg tagtggtcga ccgagacgac ggctgcgcgc gcgacggcct
     2821 cgtcgcgggt caggttcttg ccgggcaagg cgtactcctg aagagggcga aatgggtcgt
     2881 cgccatcctc gcatgggcgg tccacgccac agccaccgct taggctccgc acgcccgaga
     2941 tggcaggatt gggccgtgac ttccgacaag actgctgtgt cccgtacgtc cgcagagttc
     3001 tggttcgacc cgctgtgccc gtgggcgtgg atgacgtccc gctggatgct ggaggtcgag
     3061 cgcgtccgtc ccgtcgaggt gacctggtcg gtgatgagcc tggcggtgct caacgagggc
     3121 cgtgagctgc ccgagtccta ccgcgagatg atggacctcg cctggggtcc ggttcgcgtc
     3181 atcatcgctg cgcgtgagct ctacggcgac aaggtcatcc ggcccctcta cgacgcgatg
     3241 ggctcccgga tccacctcgg gggcgagcgc gactacgcgg ccgtcctggt ccccgcgctc
     3301 gaggaggtcg gcctcgacac ctcgctggcc cgtttcgcgg acagcgacga gcaggacgag
     3361 ctgctgcggg ccagccatca gcgggcgatc gacctcgtcg gggacgacgt cggcaccccg
     3421 gtgatctcgg tcgacgggca caccttcttc ggtcccgtcg tcagccctgc ccccaagggc
     3481 gaggcggctg gaagactgtg ggacggttgc gtgctcgtcg ccggcacgcc gggcttcttc
     3541 gagctcaagc gcagccgaac cgtcggtcct atctttgact gaccgatctt gaaccgacct
     3601 aggagcacca cgatgcgcgt ccacatcggc ggcgaccacg cggcctacga cctgttgggc
     3661 gagctggtct cgttcctgaa ggcggagggt cacgaggtga ccaaccacgg cccacacgcc
     3721 tacgacgcgg aggacgacta cccggtcttc gtgctgcggg ccgctgaggc cgtcgccgca
     3781 gacccgcagt cgctcggggt cgtgctcggc ggttcgggca acggcgagca gatggcggcc
     3841 aacaaggtga gcgggatccg cgcagccctc tgctacaacg aggagctcgc gacgctggcc
     3901 cgccagcaca acaacgccca ggtcatcgcc atcggtgcgc ggatgaccgc agtcgaggag
     3961 gccaaggcca tggtcgcggc gttcctggcc acgcccttct cgcaggcgcc gaggcatcag
     4021 cgtcggctcg acatggtctc ggcctacgag caggacggca gcctgccgcc gctggagtga
     4081 ctccacggat cgggttcggt ccctgatcgc ggatctgccg gatcggtccg tcgctgccca
     4141 ttaggctgat gtcgggtcga tggggagagc ccacccgcac acctgcttga gcccctgtgc
     4201 tccagccctg gcaaaggacg tctcggacgt ggacctcgac cgcacggtgc tggcccgtcg
     4261 ttccttgatg agccgggtcc aacgcaaccg gtcgcgctgg atgcgctggc acgactgggg
     4321 gaccgcgatc tccgtggtcg cggtcaccgc gatcctgggc tgggccatgt ccgcctggcc
     4381 cgcgatcgtg ccgttctccg cgtacatccc ggtcgccgtg gtggccggtc tgttcctgtc
     4441 gcctcgggtg ctggccctgg tcgacacctg catcctcttc gccggggcca cgacgatctt
     4501 gcaacgggtt cccatggcgt cgctgtatgt cgcctatggg gtgctggcga ccgtcatgat
     4561 catcatgttc tgggtggcca cctcgcgcgc gcgcctcggc gtccagggca acctcggcga
     4621 gacgatgctg gtcgacctgc gtgaccggct gcgcacccag ggcgagctgc cggaccttcc
     4681 cccggactgg ggtgcggagc tgtccgtgct gtcggcgtac ggagactcct tctcgggaga
     4741 cttcgtcgtg accagcaaga ccggccacac cctcgagctg gcactggtcg acgtgtccgg
     4801 caaaggcatc gccgcgggta cccggtccct gctgctgtcc ggcgcgttcg gcggcctgct
     4861 cgggtccatg tcgctggacc ggttcctccc cgcggcgaac tcctacctgc tgcggcagaa
     4921 ctgggacgag ggtttcgcca cggccgcaca tgccgtgatc gacctcgaga ccggcgagtt
     4981 cagcctcggg tcggccggtc acccgccgcc cgtgcggttc tcggcggggt ccggtcgctg
     5041 ggagatcctg gaaggtgacg aggggccggt gctcggggtc accgaggggc tcgccttccc
     5101 acggacccgc ggagtgctgg ggcgcggtga cgcgctgctg ctctacaccg atggcgtcat
     5161 cgagacccgc aaccgcgacc tgctcgacgg gatcgaccgg atgctgggca cggccgagcg
     5221 gatgatcggc gacgggttcg agggcatggc agccaagatg tgcacggcgg cgcgggccgg
     5281 tgagtccgac gaccgggcgg ccgtgctcgt gtggcgacgc tgaccgagcg tccagcccga
     5341 ccacgcagcc cggacggcta ggccggcgtc ccggaggcca ctcgccggtt gatgttcgcg
     5401 cactccacgc agaccgactc cgggatgacg ccgagtcgca tgagccaccc gaagacgatg
     5461 cagccgacgc agatgccccc gaccgactcc agcgccggga acaccaccat caccagcccg
     5521 atggcgacga ccgggagcgt ggttccggcc agccacagga tggccgcggc cgtggtcagg
     5581 acggcaccga tcgctgccgc gaaccgcttg ggcggtcccg ccgtgtaccg cggcggctgg
     5641 gacactcggg gccgtacgaa ccgctggacg aaccgcgcca ccgggctcgc ggacggaccc
     5701 cagccggagc ggagcacgaa gtcgagcgcc aacacggcat acagccacca ctggtggaag
     5761 gcgagggccg ccacggccaa caccaacacg acgcccgcga tgaggcggac gctgacgtcg
     5821 tcgacgatgt tggggaagcg agagatgcgc atacgtatca ttatggatca cataaggaga
     5881 agttatctac catggctgat cacgtgcgca gctacaacgc ccgacgaggc cgcctgtcgc
     5941 cgctgaacat gcagcggctc gaggtgctcg gcgcgcgagc gcagctcccc gagggttcct
     6001 tggaccccaa ggccgcgttc ggacgggtgg ccccggtggt ggtcgaagtc gggtgtggtc
     6061 atggcgccgc ggcgatctcc tacgcgcagg cccacccgga gcacgatgtg gtcgcggtgg
     6121 acgtctttcc tccggccttg gcccggatgc ttgccgaggc ggaccgccgc ggtctgacga
     6181 acctgtggat gcatcgcggg gacgcgatcc cgctgctgca agaccgcgtg gcggccgcat
     6241 cgctggccgc agtgcacctt ttcttcccgg acccgtggcc caagccccgc cacgccaagc
     6301 ggcggttcgt gtcgccggac accctcaacc tggtcgcaga ccggttggag cccggtggcc
     6361 ggctgctcgt cgcgaccgac cacgaggtgt atgccgcgca cgcccggtcc gcgctcgcgg
     6421 cgcagcaccg gtttaccgtc atcgaggggg atcgcccatc ctggcgcccg cacgacggct
     6481 tcgaggccaa ggggctggcc gcgggccgca cagtcaccga gtttcgggcc acgttgcctg
     6541 agacgacgtc gacctgagga cagcgccaac cccgccgatg aggcctagtg gcgcctcggg
     6601 cgaacggaca ttctcgagac cggatgggcg cttgtgaccc atggggcgtg tgaggcatgg
     6661 cactctagtg gcggtttggg tgcatccgta gccgaacgaa cgttgttaga ggtttccgta
     6721 tgccgatgtc gattcgtctc gtccgtactg cgctgaccac cgctgctctg gtggcgttgg
     6781 cgcaaccgaa cgtcgtgatg cccgctgagg cggcctcggg cactgccccg gtcacccatc
     6841 cagccgtgca cggtccgacg caccgcgtca gctaccgggg ggtggccctg caggtcccca
     6901 ccgcgtggcc cgtggtcgac cttcgcgcga acccgcacgc ctgcgtccga cttgacgaga
     6961 acgccgtcta tgtcggcgag ccggggtcgc agcaggactg cccagcgcac gtggtcgggc
     7021 atgccgacac catctggatg cacggctcgg atggagctgg cgcggggctg ccatcctccc
     7081 gcccggcgaa ggtcggagcc ctggcagccc gggtcggcac tgaccccacc gggcacgaca
     7141 ccacggtgca gttctcgcac cagggcgttc aggtggagac ctcctgggcc tccgactccc
     7201 gcacggtcga gtcggcgctc tcgacggcga ccgccagctc gacgcccgcg gcgccctctt
     7261 cctcaccagt caccccgtcg cccgcgcccg cagcgctctc gtcggcgcgg tcgacgctcg
     7321 atgtctccga tgcggccctg gtttccgcca ccccgacggg tggctcgacc tacaccggca
     7381 tgggcttcga cacgtgcgcc gcgccgacgg cctcgaccat gcggtcctgg ctgtcgtctc
     7441 cctaccggag cgtgggggtc tacatcggtg gttcgatgcg agcctgcccg gacggcaacc
     7501 tgaacgcgtc ctgggtcaac accgtcacct ccatgggctg gggccttcag ccgatctatg
     7561 tcggcccgca ggcgccgtgc gtctaccaga gcggtctggc caccatcacc gcgagccagg
     7621 ccgcagccca aggcacggcg aatgccgacg acgccatcgc caaggcgcag aacttcggga
     7681 tgggcgcggg gacgcccatc tactacgaca tggaggcgta caacac
//
LOCUS       DASYFY010000530         1568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1772490, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000530 DASYFY010000000
VERSION     DASYFY010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1772490"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1568)
                     /locus_tag="VGN19_10770"
     CDS             complement(<1..>1568)
                     /locus_tag="VGN19_10770"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196414.1"
                     /translation="RERSGVSEAVADQVVAYLGAGLAALGALPTRDRIVIERVFDESE
                     GTQLIVHSPYGGRINRALGLALRKRFCVSFDFELQAAADDDTVVLSLGPQHSFPLPDV
                     PKMLPSRSAVEALTQAVLPHPMLASRWRWNLTRGLVVPRSLSGKRRPIHLQRMESDDL
                     LAAVFPQAAACQDNIVGPREIPDHLLVRQTIDDTLHEAMDLETATAVVARIESGDLPV
                     HCCDTTEPSLLAHEIITARPYAFLDDEEFQNRRTNAVHLRRGLAPDLTSLGRLEPSAI
                     EAVHAEIDPLPGSADELHDLLSSTVVLRARPEWRPLFDQLAAAGRAAVRAGDGGELWV
                     TTEGAARADGALRGDDDAVVQTIRGHLELAGITTAGALAAQTTLAPGRVAWALAALQQ
                     EGFVFEGRYTPGATGTEYVARRLLARMHAYSRRSRRQSVEPVTAQDFMRFLLEWQHVA
                     PGTQLSGPTGLATVLEQLQGYEAAAVAWESELIASRLVRYQQAWLDALCHAGETAWLR
                     LSPRPQKEGSGPSK"
BASE COUNT          231 a          543 c          575 g          219 t
ORIGIN      
        1 cttcgacggg cccgaccctt ccttctgagg acgcggggaa agacgcaacc aagctgtctc
       61 cccggcatgg cacagcgcat ccagccaggc ctgctggtag cgcaccaggc gggaggcgat
      121 gagctcgctc tcccacgcga cggcggccgc ctcgtacccc tgcagctgtt cgagcacggt
      181 ggccagaccg gtgggcccgg acagctgcgt gcccggtgcg acgtgctgcc attccaggag
      241 gaagcgcatg aagtcctggg ccgtgaccgg ctcgaccgac tggcgacggc tgcggcgcga
      301 gtaggcgtgc atccgagcca gcagccggcg ggccacgtac tcggtgccgg tcgcccctgg
      361 cgtgtaccgc ccctcgaaca cgaacccctc ctgctgcagc gcggcgagcg cccacgccac
      421 ccggccgggg gccagcgtgg tctgcgccgc cagcgccccg gcggtagtga tcccggccag
      481 ctccagatgc cccctgatcg tctgcacgac ggcgtcatcg tcgccccgca gcgcaccatc
      541 ggcgcgggcc gccccttcgg ttgtcaccca cagctcacca ccgtctccgg cccgcaccgc
      601 cgcccggcca gcggcggcga gctggtcgaa cagggggcgc cactccgggc gggcccgcag
      661 cacgacggtc gagctgagca ggtcgtgcag ctcgtcggcc gagccgggaa gcgggtcgat
      721 ctcggcgtgg accgcttcta tcgctgaggg ctcgagccgt ccgagtgacg tcaggtccgg
      781 cgccaggccg cgccgcaggt ggaccgcgtt ggtgcggcgg ttctggaact cctcgtcgtc
      841 gaggaacgcg tacggccggg cggtgatgat ctcgtgggcg agcagcgacg gctcggtggt
      901 gtcgcagcag tggacgggca ggtcacctga ctcgatgcgg gccacgacgg ctgtggcggt
      961 ctccaggtcc atggcctcgt gcagggtgtc gtcgatggtc tggcgcacca ggagatggtc
     1021 ggggatctcg cggggtccga cgatgttgtc ctggcaggcc gctgcctggg ggaacaccgc
     1081 ggccaggagg tcgtcggact ccatgcgctg gaggtggatg ggtcggcgtt tgccgctcag
     1141 cgatcgcgga acgaccagcc cgcgggtcag gttccaccgc cagcgcgagg cgagcatggg
     1201 atggggcagg acggcctggg tcagagcctc gacggctgac cgactcggca gcatcttcgg
     1261 cacgtcaggc aacggaaagc tgtgctgggg accgagggag agcaccacgg tgtcgtcgtc
     1321 ggccgcggcc tggagttcga agtcgaagga cacgcagaat cgcttgcgca gagccagccc
     1381 gagggcccgg ttgatccgac cgccgtacgg ggagtggacg atgagctggg tcccctcgct
     1441 ctcgtcgaac acccgctcga tgacaatgcg gtcacgggtg ggcagcgcac cgagcgccgc
     1501 cagcccggca ccgaggtagg ccacgacctg gtcggccacc gcctcggaca ccccggaccg
     1561 ctctcgta
//
LOCUS       DASYFY010000531         7408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_143000, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000531 DASYFY010000000
VERSION     DASYFY010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7408
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143000"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1355
                     /locus_tag="VGN19_10775"
     CDS             <1..1355
                     /locus_tag="VGN19_10775"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEV7196415.1"
                     /translation="GQLVLRSTVPLAADGHAAVGQPTLAEGETLALELSRQGSTRPLD
                     MIQVESLLSDTLAYWQRWVRKSRYQGRYREMVERSALTLKLLVHQPTGALVAAATTSL
                     PESIGGTRNWDYRFTWVRDAAFSIYALMRLGFTEEAGAFMAWLEDRCTEAPGGHGLQI
                     LYNIDGSPARAEEPLEHLRGYRDSRPVRIGNGAADQLQLDIYGELMDSVYLYNKYGDP
                     ISYELWLALCRQLEWLQDHWDRPDHGVWEVRGPRRRFTYSTMMTWVAFERGIRIAQQR
                     GLPAPLEQWREAANSAYLQVQQCGWNPARHAYVQYPDSHTLDAGALAMPLVKFTGPRD
                     PRFLATLERIENELVTDSLVHRYRNDGTDGFTEAEGTFNLCSFWYVEALSRAGRLDQA
                     RHTFEKMLTYANHLGLYAEEIGPSGEALGNFPQAFTHLALISAAVNLDRALDGHQSRR
                     "
     gene            1355..2641
                     /locus_tag="VGN19_10780"
     CDS             1355..2641
                     /locus_tag="VGN19_10780"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEV7196416.1"
                     /translation="MSSPHDGPRSGPSRDPAPWGQVEVHAGSGLVFRRHAVLLVVPDL
                     PPGRLEKAAELMRICAERGGPRDLRHIRRLAWVITEDDSDGVPGFACLTAQGEHVLVM
                     AHGEVRITVQDHPPVVFTGTESVAWVERSVPTTFTTLSVESTAGAPEPVRSTLRLDLL
                     DGAVPGAGVTVHRRIAVEPNPVTPALPVGLLEEEPAVEPPLVRLPSPGRGADLDPGQA
                     RTVLRATPGTQVVSLTPRPPEASRVRPPLPLGTAGQVTSEPGRTAGDLGVPVAAAHVA
                     GIVCLCGEFNSPDSVECQVCGAPLDRDGPRETRLRPPLGILITDDGRVFTVTDDIVIG
                     REPGQAPEVKTGRARPLVLRDAEHSTSRVHAQIRLAGWSIQVLDRGSANGTFLSRSGS
                     GGPWVPVVPEPGTPLAPGDRLRLGNRELLFDRYQAK"
     gene            2668..3474
                     /locus_tag="VGN19_10785"
     CDS             2668..3474
                     /locus_tag="VGN19_10785"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEV7196417.1"
                     /translation="MDGIGGYSFVREIGRGVHGRVFLATAPPRLSADEAQVAVKVFST
                     DAAEDGFAAMVEELRTFADLASPRLIRLYDAGLEGRTAFCTMRFEPLGSLGSPKREVS
                     RRDRVLAVARAAQAAHELHEAGLAHRGIRPANILIASTGAVLSEPAVAQLLSRGEHLT
                     GLGTRGDARDLEFVDPALMRGATPGRPSDIWALGVTLHIALTGFGLYPALTSADPMVA
                     ARMFLRTRPEPDAGLSGRERAVVGRAIHPDARERYPTAASLADDIDGLVA"
     gene            3587..7027
                     /locus_tag="VGN19_10790"
     CDS             3587..7027
                     /locus_tag="VGN19_10790"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEV7196418.1"
                     /translation="MVVDAITTIAVPKLIGTVVTLLKNDHAPILFGFRAPRGWGIPVL
                     AMAIVVMASASSLAESLCDVSLAKIGRALGYNVRTALYAHLQRLSLAYHVRRSTGDVL
                     TRITNDVQVLEEFVVESVQDMLGSAMLLVGSVAFLFSQSWRIALLAVVIVPLLAFVSS
                     FFARRIKASTRELRAREGDLASTAQEMLTTISLVQTYGRAAWGQEKFARESRSAKDAV
                     LRTARLEAVFGFTVAFLEAAVIALVIVFGARLVRADSILSGDLVTFILLIQGMFKPTR
                     RIIKQWNSVAKVYASGDRVGEVLDREPAVQDLPGAQEAPPLTGAVEFRDVSFAYQQQV
                     ASGSEDDEEDGPPRLTLLSVSFTLDPGEVVALVGHSGAGKSTIAQLLPRLYDPQAGAV
                     LLDDQDIRTFTLDSLRAQISMVLQETILLRGTVAENIAYGLEGATMPEVVRAAVRAQA
                     DDFIQALPDGYDTILGERAATLSGGQRQRLAIARAFIRDTPILVLDEPTTGLDAKASA
                     GVAEALSTLLRGRTAVIVSHDLNLIRGVDRIIVLSGGRVLEEGTPADLLAGGGLYAEL
                     YASQFGVAMAEATALGDADQAAADQAAADDQFEAVLLDAVPRPASDREYQQLTGWRRP
                     IHAPLRRDDPELDPLRLPALTMSVPGLQEMVDPSAMGRHLQAMLRDGCVLDSYVADKF
                     VLDPAGGGSLQYRMRVRSQASDATEEVLVGARLFSSPEEAEEYAARAAYLAQSARRDG
                     HLARFARVVDRVPHLGLVLHAFPVDPQLPGLLSAGDDPHLGALLESTLPKSLSGVALA
                     GLRTEVVKYAVGEHAVLRYELWWRVQPSGRSVRQVVYGKVYSDERGARVGPTVTALHR
                     SFGSASTRMQPFLLPRVLGYLPEIRLLLSEALPGSPQIPSLVRAHATHGRTPSSGMPT
                     AAAALRSCARVAAALHRPVPDSFDLRGTGLGDRTRSAAREIDRLLTETEALARFAPGL
                     ASTLSSHLGALRTDADSSPLPLALAHGDLTLSEVLLDGPISSLFDLDAACLAEPAFDL
                     GHFTARLGLAGRRAAEAAGVEGHRRVRELERGFLDAYAEARPDLDTASLAGRTDIYQV
                     TSLVDLVLRSWWRLKPDRLALSLTLLEEELPGRRASSSRPGQKDSLQGGPRSKAIDRR
                     "
     gene            7134..>7408
                     /locus_tag="VGN19_10795"
     CDS             7134..>7408
                     /locus_tag="VGN19_10795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196419.1"
                     /translation="MAVAASLGLLAVGVSSGQAHTHPTATERAAPAVVFIEAKAHVEV
                     TLVEHDLFSDAHGVHVHVFQDTSEPVLDTASGFFVDPNGTIVTTGALL"
BASE COUNT         1118 a         2660 c         2459 g         1171 t
ORIGIN      
        1 caggacagct ggtcctgcga tcgacggttc cactcgccgc cgacggccat gctgcggttg
       61 gccagccgac cctcgccgag ggcgagacac tggccctcga gctctcccgc caggggtcca
      121 cacgtccgct cgacatgatc caagtcgagt cgttgctctc ggacaccctc gcctactggc
      181 agcggtgggt gcgcaagtcc cggtaccagg ggcgttaccg cgagatggtg gagcggtccg
      241 ccctcaccct caagctgctg gtgcaccaac ccacgggtgc gctggtcgcc gcagccacca
      301 cctcgcttcc tgagtcgatc ggcgggacgc gcaactggga ctaccggttc acgtgggtga
      361 gggatgcggc gttcagcatc tacgcgctca tgcgcctggg ctttaccgaa gaagcagggg
      421 ccttcatggc ctggctggag gaccgttgca cggaagcgcc ggggggacac ggactgcaga
      481 tcctctacaa catcgacggt tccccggcac gagctgagga gccactcgag catctacgcg
      541 gctaccgcga ctcccggccg gtgcggatcg gcaacggcgc tgccgaccag ctacagctcg
      601 acatctacgg agagctgatg gactcggtgt acctgtacaa caagtacggc gatcccatct
      661 cctacgaact gtggctcgcc ctgtgtcgcc agctcgagtg gcttcaggac cactgggacc
      721 gcccagacca cggggtttgg gaggtgcgtg gtccccgtcg gcgcttcacc tactcgacga
      781 tgatgacctg ggtggccttc gagcgcggga tccggatcgc ccagcagcgc ggccttcccg
      841 cccccctcga gcaatggcgg gaggccgcca acagcgccta cctgcaggta cagcagtgcg
      901 gatggaaccc ggcccggcac gcctacgttc agtacccgga cagtcacacg ctcgacgccg
      961 gtgccttggc gatgcccctg gtcaagttca ccggcccacg cgaccccagg ttccttgcca
     1021 cgctcgaacg catcgagaac gagctggtga ccgacagcct ggtgcaccgt taccgcaacg
     1081 acgggacgga cgggttcacc gaggccgagg gcaccttcaa cctctgctcc ttctggtacg
     1141 tcgaggccct gagccgtgcc gggcggctcg accaggcgcg gcatacgttc gagaagatgt
     1201 tgacctacgc gaaccacctc ggtctgtatg ccgaggagat cggcccctct ggcgaggcgc
     1261 tggggaactt cccgcaggcc ttcacccacc ttgccctcat cagtgccgcg gtcaacctcg
     1321 accgcgccct ggacgggcac cagagcaggc gctgatgtcg tctccccacg acggcccgcg
     1381 gagcgggccc agccgtgacc ccgccccgtg gggccaggtg gaggtccacg cagggtcggg
     1441 gctcgtcttc cggcggcatg ccgtactgct cgtcgttccg gacctcccgc cgggtcggct
     1501 ggaaaaggca gccgagctga tgcggatctg cgcagagcgt ggcggacccc gcgaccttcg
     1561 acacatccgt cgcctggctt gggtgatcac cgaggacgac tccgacgggg tgcccgggtt
     1621 cgcgtgcctg acggcacagg gcgagcacgt cctcgtcatg gcccacggcg aggttcgcat
     1681 caccgtccag gaccacccgc cggtcgtctt caccggcacg gaatccgtcg cgtgggtcga
     1741 gcgctcggtg ccgaccactt tcaccactct cagtgtggaa agtaccgccg gcgcccccga
     1801 gccggtgcga agcaccctac ggctcgacct gttggacgga gctgtcccgg gcgcgggcgt
     1861 gaccgtgcac cggcggatcg ccgtcgagcc caaccccgtg acgccagcgc ttcctgtcgg
     1921 ccttctcgag gaggagccag cggttgagcc acctctggtc cgtctgccca gtccggggag
     1981 gggcgcagac ctcgaccctg gtcaggcgag gaccgtgctc cgggcgacac caggtaccca
     2041 ggtcgtcagt ctcacgcccc gcccgcccga ggcctcacgc gtccggccgc cgctgcctct
     2101 cggcaccgct ggccaggtga cgtctgagcc gggccgaaca gcgggagacc tcggcgtgcc
     2161 ggtcgcggcc gcccacgttg ccgggatcgt ctgcctgtgc ggggagttca acagtcccga
     2221 ctctgtggag tgtcaggtct gcggcgcacc cctcgaccgc gacggccctc gggaaaccag
     2281 gctccgcccg cccctgggca tcctcatcac cgacgacggg cgcgtgttca ccgtgaccga
     2341 tgacatcgtg atcgggcgcg agccgggtca ggcgcctgag gtcaagacag gtcgggccag
     2401 accactggtc ctgcgggacg ccgaacacag cacctcacgg gtccacgcgc agatacggct
     2461 tgccggctgg agcatccagg tgttggaccg gggctcggcg aacggcacgt ttctcagccg
     2521 atcaggttcc ggcggcccat gggtcccagt ggtccccgag cctggcaccc ccctcgctcc
     2581 cggcgaccgg ctgcgcctcg gcaaccgtga gctgctcttt gaccgctacc aagccaagta
     2641 ggcgcgcccg aactgaaagg agcccgcatg gacggcatcg gcggctattc cttcgtccgc
     2701 gagatcgggc gcggcgttca cggccgggtg ttcctggcaa cggcgccgcc cagactctca
     2761 gccgacgagg cacaggttgc cgtgaaggtc ttctcgacgg atgccgccga ggacggcttc
     2821 gccgccatgg tcgaggagct ccgtaccttc gccgacctgg cctcacctcg gctcattcgg
     2881 ctttacgacg cggggctcga aggccggacc gctttctgca ccatgcggtt cgagccgttg
     2941 gggtcgcttg gctcaccgaa gcgggaggtg agccggcgag atcgcgtgct ggcggtggcc
     3001 cgtgccgccc aggcggcgca cgagctgcac gaggcagggc tggcgcaccg cggcatacgg
     3061 ccggccaaca tcctgatcgc ctcgaccggg gcggtcctgt cggaacccgc cgtggcccag
     3121 ctgctctccc gcggcgagca cctgacgggg ttggggacgc gcggcgacgc ccgcgatctc
     3181 gagttcgtcg accctgctct catgcggggc gccaccccgg ggcgcccgag cgacatctgg
     3241 gctctcgggg tcacccttca catcgccctc accggtttcg gcctctaccc cgccctgacc
     3301 tccgcggacc ccatggtggc ggcgcgcatg ttcctgcgga cccggcccga gcccgacgcc
     3361 gggctgagcg gccgcgagcg tgcggtcgtg ggtcgagcga tccaccccga cgcccgcgag
     3421 cgctacccga cggccgcctc gctcgccgac gacatcgacg ggttggtcgc atgacgacgg
     3481 tggtgcgtag cccatgagag gtcgcgggga cgctggacgg acgctggcaa tctatcgacg
     3541 gttcgccgta ggagaacggc cgcggttcgc gggcgccctg gtcctcatgg tggtcgacgc
     3601 catcacgacc atcgcggttc cgaagctgat cgggacggtc gtgacgctgc tgaagaacga
     3661 ccatgccccg atcctcttcg gtttcagggc tccccggggg tggggaatcc ccgtgctggc
     3721 catggccatc gtggtcatgg cgtcggcgag cagccttgct gagtcactct gcgatgtgtc
     3781 cctggccaag atcggccggg cgctcggtta caacgtgcgg acggcgctgt atgcgcacct
     3841 ccagcgactg tcactcgcgt accacgtccg acgtagcacc ggcgacgtcc tgacgcgcat
     3901 caccaacgac gtccaggtcc tggaggagtt cgtcgtcgag tccgtccagg acatgctcgg
     3961 aagtgccatg ctgctcgtcg gcagcgtcgc cttcctcttc tcgcagtcct ggcgcatagc
     4021 gctgctcgcg gtggtcatcg tgcccctgct cgcctttgtg tcaagcttct tcgcccggcg
     4081 gatcaaggca tctacccgcg agctgcgtgc ccgcgagggt gacctcgcgt ccaccgccca
     4141 ggagatgctc accacgatca gcctggttca gacctatggc cgagccgcgt gggggcagga
     4201 gaagtttgcc cgagagagcc gatcggccaa ggacgctgtc ctgcgcacag cccgcctcga
     4261 ggcggtgttc ggcttcacgg tcgcgttcct cgaggccgcg gtcatcgccc tcgtcatcgt
     4321 cttcggggct cggttggtga gggcggactc gatcctctcg ggcgacctgg tgaccttcat
     4381 cctcctgatc caggggatgt tcaaaccgac ccggcggatc atcaagcagt ggaacagcgt
     4441 cgcgaaggtg tacgccagcg gcgaccgggt tggagaggtc ctcgaccgcg agccggccgt
     4501 ccaggacctg ccaggagcgc aagaggcgcc ccctttgacc ggagccgtgg agttccggga
     4561 cgtcagcttc gcctaccagc agcaggtcgc tagcgggagc gaagacgacg aggaggacgg
     4621 gccgccacgg ctcaccctgc tctcggtgag cttcaccctc gaccccggtg aggtagtcgc
     4681 actcgtgggt cacagcggcg cgggcaagag caccatcgcc cagctcctgc ccaggctcta
     4741 cgacccccaa gccggggcag tcctgctcga tgaccaggac atccgcacgt tcaccctcga
     4801 ctcactgcgc gcgcagatca gcatggtgct tcaggagacc atcctgctgc gcggaacggt
     4861 ggcggagaac atcgcgtacg gcctggaggg tgccaccatg ccggaggtcg tccgtgccgc
     4921 ggtccgggca caggccgacg acttcatcca ggccctcccc gacggctacg acacgattct
     4981 cggcgagcgg gctgcgaccc tgtcgggagg gcaacgccaa cggttggcga tcgcccgggc
     5041 cttcatcagg gacacgccga tcctcgttct cgacgagccg accaccgggc tcgatgccaa
     5101 agcctccgct ggcgtcgccg aggcactcag caccctcctt cgcggccgca cggcggtcat
     5161 cgtgtcgcac gacctcaacc tgatccgcgg cgtcgaccgc atcatcgtgc tctccggcgg
     5221 ccgcgtgctg gaagaaggca cgcccgcgga cctgctggcc ggtggcggcc tctatgccga
     5281 gctctatgcc agccagttcg gcgttgccat ggccgaggcc accgccttag gggacgcaga
     5341 ccaggcggcc gcagaccagg cggccgcaga cgatcagttc gaggcggtcc tgctcgacgc
     5401 cgtgccgcgc cccgcctccg accgcgagta ccagcagctc accggctggc ggcgtcccat
     5461 ccatgccccg ctgcgccggg atgatccaga gctggaccca ctccggctcc ctgccctgac
     5521 catgagcgtc ccagggctcc aggaaatggt tgacccctct gccatgggtc gccacctcca
     5581 ggcgatgctc cgggatggct gcgtcctgga ctcgtacgtg gccgacaagt tcgtcctgga
     5641 cccggctgga ggtggcagcc tccagtaccg catgcgcgtg cggtcccagg cgtccgacgc
     5701 caccgaggag gtgctggtcg gcgcccgcct gttctcgtca cctgaggaag cggaggagta
     5761 tgccgcccgg gcggcatacc tggctcagtc cgcccggcgg gacggccacc tcgcacggtt
     5821 cgcccgcgtg gtcgacaggg tgccgcacct cggcctcgtg ctgcacgcct tccccgtcga
     5881 cccacagctt cccggcctgc tttcggcggg agacgacccg cacctcggag ccctgctcga
     5941 gtcgactctt cccaagtcgc tgtccggcgt cgccctggct ggtcttcgca ccgaggtcgt
     6001 caagtacgca gtgggtgagc acgcggtgct caggtacgag ctgtggtggc gggtgcagcc
     6061 cagcgggcga agcgtgcggc aggtggtcta tggcaaggtc tactccgacg aacggggggc
     6121 ccgggtcggg ccgaccgtga cagcgctgca ccggagcttc gggagcgcca gcacgcggat
     6181 gcaaccattc ctgctccccc gcgtcctcgg gtacctgccg gagatcaggc tgctcctgtc
     6241 cgaagcgctc cctgggagtc ctcagatccc cagcctcgtc cgagcgcacg cgacccacgg
     6301 tcgaaccccc agctcaggga tgccgaccgc ggccgcggca ctgaggagct gtgcccgggt
     6361 cgctgccgcc ctgcaccggc ccgttcccga cagcttcgac ctgcgaggca cgggcctcgg
     6421 cgaccggacc agaagcgccg cgagagagat cgaccggctc cttaccgaga ccgaagcgct
     6481 tgcgcggttc gcaccggggc tggcaagcac gctctcgtcg caccttggag cccttcggac
     6541 cgatgcggac tcgtcccccc tgccattagc cctggcacat ggcgacctca ccctttcgga
     6601 ggtgctcctc gacgggccca tcagcagcct tttcgacctg gacgcggcgt gcctggccga
     6661 accggcattc gacctggggc acttcacggc gcgcctcggc ctggcgggtc ggcgggcagc
     6721 ggaggcggcc ggggtcgagg gccaccgccg ggtccgcgag ctggagcggg gcttcctcga
     6781 tgcgtacgcc gaggctcggc cggacctcga cacggcgtcg ttggcggggc gaaccgacat
     6841 ctatcaggtc acctccctgg tcgacctcgt gctgcgcagc tggtggcgac tgaagcctga
     6901 ccggctcgca ctgtccctca ccctcttgga agaggaacta cccggtcgac gggcgtcctc
     6961 atccagaccg ggacaaaagg attccctaca gggcggccca cgttcaaagg cgattgacag
     7021 gcgataacca ggggtcttcc atggagcaca ggggccgcac acacaacgac tgcccgtcac
     7081 ttcggtcgtg cggagcgcgt atgcatggac acgagcgtca ccgtcacctc gcattggctg
     7141 ttgccgcgtc gctcggcctg ctagccgtcg gcgtctccag cgggcaggcg cacacccacc
     7201 cgacggcgac cgagcgcgcg gcgcccgcgg tggtcttcat cgaggccaag gcccacgtcg
     7261 aggtgacgct cgtcgagcac gacttgttct cggacgccca tggggtacac gtccacgtct
     7321 tccaagacac gtccgagccc gtgctggaca ccgccagcgg cttcttcgtc gatccgaacg
     7381 gcaccatcgt caccacaggg gcgctcct
//
LOCUS       DASYFY010000532         4442 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_352689, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000532 DASYFY010000000
VERSION     DASYFY010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4442
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352689"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..811)
                     /locus_tag="VGN19_10800"
     CDS             complement(17..811)
                     /locus_tag="VGN19_10800"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEV7196420.1"
                     /translation="MKVHHLNCGTMRPRATPDGLVCHVLLVEGPDGLILVDTGLGTRD
                     AADPAGRFGAARFYVRPTFDTAEAAVTRVERLGLDPRDVHDVVLTHFDADHTGGLADF
                     PWARVHLTAAENLASLYPKGPVERGRYLPSHREHEPIIVEHTPAQGEAWRGFPGAKEL
                     TDIAPGIVLINLPGHSRGHAAIAVDAGDRWILHVGDSFYHHGQIDGTGKAPLALTAME
                     RFIAHDWKLVQGNHRRLAELWQAADPDLLVVNAHDPSLLRRAQQRR"
     gene            complement(808..1044)
                     /locus_tag="VGN19_10805"
     CDS             complement(808..1044)
                     /locus_tag="VGN19_10805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196421.1"
                     /translation="MDVTVANGGDIQIELITPVNDALRRIATSVIELSDLGGQQEVKM
                     AAANWDGSNPNQEIDANLIGGDPAAQAARLEALG"
     gene            1339..1725
                     /locus_tag="VGN19_10810"
     CDS             1339..1725
                     /locus_tag="VGN19_10810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013116110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7196422.1"
                     /translation="MSRLTNPFPSTIVRYVPNYHDELDAVLRALADPTRRAVVERLAK
                     SPAVVSELAAPFSMALPSLMQHLRVLENAGLVTSQKHGRVRTVSLRPGALDVLHLWLG
                     EQRTPAERQADRLGIHLTRTTPKKET"
     gene            1727..2374
                     /locus_tag="VGN19_10815"
     CDS             1727..2374
                     /locus_tag="VGN19_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020075786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7196423.1"
                     /translation="MARVRIDLNISLDGYASSTGHSPENPMGEDWGRLTAAYAATRTF
                     RERVLGDTSGTGTTGIDDSYAAAYFEGVGAEIMGAAMFGLHSFPDDPDWKGWWGDQPP
                     FHAPVYVLTHTAPRASIPMQGGTTFHFRSTAIEDVLAEATEAAGGLDVRVGGGIGTAR
                     DFLLAGLVDDLHVAIAPILLGRGKRLWDDLRGLDLTHKVTTQVAESGTTHVTFTR"
     gene            2384..2845
                     /locus_tag="VGN19_10820"
     CDS             2384..2845
                     /locus_tag="VGN19_10820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEV7196424.1"
                     /translation="MTIERRLARAGFTLTRAYPVPLDRVWRAFAEEDQKLDWFGAGDS
                     WEPGEWAFDFRVGGRDVAVGTFHDGPVSRYEATYTDIVEHVRIVTTYEMWLDGVHMST
                     SVASLEFEPIDEGTRFTHVEHGVFFDQFWADGPNREEGSRGLLEALGNYLA"
     gene            3110..4423
                     /locus_tag="VGN19_10825"
     CDS             3110..4423
                     /locus_tag="VGN19_10825"
                     /inference="COORDINATES: protein motif:HMM:NF026010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196425.1"
                     /translation="MITRTGKDGAPRFTGVYRDLTGRAYSAGTFTTEARALREATNAE
                     ADASAGRGFDPRRARQTLRHYVETEWLPHHMIEASTRESYLYLLGRYIYPDLGDLRMR
                     DIQPTRVRTWVTRLSEVHGANPPTIRNAKVVLDAIFTTALNDQVMPLHPGRGVKTPAV
                     VRKPRRIITAEQFQHLHDTLPDPTMRLLVETDIESGLRWGELTELRARDLDIPTGMLT
                     IARTVIHLRSATRPSDAHFLVKDYPKDAEWRQVKLAAHLVAKLDLHITAHQLGSEDLL
                     FPQPQPTGPARRRRPDVLPHPSTLGRTEPNANGRSYPHGTLTAYQAGRCRCIHCRDAV
                     AAYRAARRAAGKDAPRRRRTIAGDGHLSNDWFRAHVWKPALEESGIGLRITPHGLRHA
                     HASWLQARGIASDASFGRFGDRDPVRDLGFRTGRPARWRCGRHAL"
BASE COUNT          707 a         1597 c         1474 g          664 t
ORIGIN      
        1 cgtcggcgtt cccgagtcag cggcgctgct gcgcgcgacg gagcaggctg gggtcatgcg
       61 cgttgacgac cagcaggtcg gggtcggcgg cctgccagag ctcggcgagg cgacggtggt
      121 tgccctggac gagcttccag tcgtgggcga tgaagcgctc catcgcggtc agggccagcg
      181 gagccttgcc ggtgccatcg atttgcccgt ggtggtagaa cgagtcgccc acatggagga
      241 tccagcggtc gccggcgtcg acggcgatgg cggcatggcc gcgcgagtgg cccggcagat
      301 tgatcagcac gatgcctggg gcgatgtccg tgagttcctt ggcgccgggg aaaccgcgcc
      361 atgcctcgcc ctgggctggg gtgtgctcga cgatgatcgg ctcgtgctcc cggtgcgaag
      421 gcaggtaacg gcccctctca acgggaccct tcgggtacag ggaggcaagg ttttcggcag
      481 cggtgaggtg cactcgagcc catgggaagt ccgcgagccc accggtgtgg tcggcgtcga
      541 agtgagtcag tacgacgtca tggacgtccc gcgggtcgag gccgagccgc tcgacccggg
      601 tgacggccgc ctccgccgtg tcgaacgtag gccgcacgta gaaccgggcg gccccgaagc
      661 ggccggctgg gtccgcggca tcccttgtcc ccagcccggt gtcgacgagg atcagaccgt
      721 cgggcccttc gaccagcagg acgtggcaga ccagcccgtc cggggttgcc cggggccgca
      781 tggtgccgca gttgaggtgg tggaccttca tcccaatgcc tccagcctgg ccgcctgtgc
      841 agccgggtcg cctccgatga ggttggcgtc gatctcctgg ttcgggttgc tgccgtccca
      901 gtttgccgcg gccatcttga cttcttgctg cccaccgaga tcggagagct cgatgacgga
      961 ggtcgcgata cgccgaaggg cgtcgttcac cggagtgatc agctcgatct ggatgtcccc
     1021 gccgttggcg acggtgacgt ccacggccaa gtcggagggc tcgccgcggt tggcgaagtc
     1081 gctggggcct gacgccctcg aggtagaaac tacgggccga tcccgcaggc gtgaagttgc
     1141 gcatggaggc cacgaagagc ggacgacgta cccgatctgg ctgatgctgc cccacatgtt
     1201 cgcgaccggg gcctggtgcc ggcacgaggc cggtgtgggt actgggctca gttgagaacc
     1261 ctcataccca gtccatcgca ctcgtccgcc aatgcgttca cgatgcaggt cgcaggcgga
     1321 cgcgaccacg ttcctggcgt gagccggttg acgaatccct tcccgtccac gatagttagg
     1381 tatgtgccta actatcacga cgagctcgac gccgtgctcc gcgccctcgc ggatccgacg
     1441 cgccgggccg tcgtggaacg gttggcgaag tccccggccg tcgtgtccga actcgcggcc
     1501 ccgttctcga tggccttgcc ctcgctcatg cagcacctgc gcgtcctgga gaacgcggga
     1561 ctggtcacgt cgcagaagca cggacgcgtc cgcaccgtga gcctgcgacc gggcgccctc
     1621 gacgtcctcc acctgtggct cggcgagcaa cgaacccccg cagaacgcca agccgaccgg
     1681 ctcggcatcc acctgacccg caccaccccg aagaaggaga cctgacatgg cccgcgtccg
     1741 catcgacctg aacatctcgc tggacggcta cgcctcgtcg accggccact cccccgaaaa
     1801 cccgatgggt gaggactggg ggcgcctcac ggcggcctac gccgcgaccc gcacgttccg
     1861 cgagcgcgtc ctgggcgaca ccagcggcac cggcacgacc ggcatcgacg actcctacgc
     1921 cgccgcgtac ttcgagggcg tgggcgccga gatcatgggc gcggccatgt tcggcctgca
     1981 ctcgttcccc gacgatccgg actggaaggg ctggtggggt gaccagccgc cgttccacgc
     2041 cccggtctac gtcctcaccc acacggcacc gcgtgcgtcg atcccgatgc agggcggaac
     2101 gacgttccac ttccgcagca ccgccatcga ggacgtgctc gccgaggcga ccgaggctgc
     2161 cggcggcctg gacgtgcgcg tcggcggtgg catcggcacc gcgcgcgact tcctgctcgc
     2221 cggcctggtc gacgacttgc acgtcgcgat cgccccgatc ctgctcggcc ggggcaaacg
     2281 actgtgggac gacctgcgcg gcctcgacct cacccacaag gtgacgacgc aagtggccga
     2341 gagcggcacg acccacgtca ccttcacgcg ataggacctg cccatgacga tcgaacgccg
     2401 actcgcgcgc gccgggttca ccctgacccg cgcctacccc gtccccctcg atcgcgtctg
     2461 gagagccttc gccgaggagg accagaagct ggactggttc ggcgccggcg acagctggga
     2521 gcccggcgag tgggcgttcg acttccgcgt cggcggacgg gacgtcgccg tggggacgtt
     2581 ccacgacggt ccggtctcgc ggtacgaggc cacgtacacc gacatcgtcg agcacgtgcg
     2641 catcgtcacc acgtacgaaa tgtggctcga cggggtccac atgtcgacgt cggtggcgtc
     2701 gctcgagttc gagccgatcg acgagggcac ccggttcacg cacgtcgagc acggcgtctt
     2761 cttcgaccag ttctgggccg acgggccgaa ccgcgaggaa ggcagccggg gcctgctcga
     2821 agctctgggc aactacctcg cgtaggggcc aaacggcccc cggaccaggt ccgggggccg
     2881 ttttgcctgg tagcgggggc aggattcgaa cctgcgacct ctgggttatg agcgtcgttg
     2941 cggcgtcaat ccgggcctgc tcgttgtcgc tccagatggg ctaaactgca ggtcagagcc
     3001 gtgattctgg ttggtctggt gtcgcccagc accgggctcg ttcgcggggc gccgctaaca
     3061 aatcgctaac aaacgatctt caatggaatc caggggcagc atggcgtacg tgatcacccg
     3121 caccggcaag gacggcgcgc ctcgcttcac cggggtgtac cgggacctga ccggtcgggc
     3181 gtactccgcg ggcacgttca ccaccgaggc acgcgccctg cgggaggcca cgaacgccga
     3241 ggcggacgcc tcggccggcc gcgggttcga tccgcgccgg gcccggcaga cgctgcgcca
     3301 ctacgtcgag accgagtggc tgccccacca catgatcgag gcctccaccc gggagtccta
     3361 cctctacctg cttggccgct acatctaccc cgacctcggc gacctgcgaa tgcgcgacat
     3421 ccagcccacc cgggtccgca cctgggtgac gcgcctgagc gaggtccacg gcgccaaccc
     3481 gcccaccatc cgcaacgcca aggtggtgct ggacgccatc ttcacgaccg cgctgaacga
     3541 ccaagtcatg cccctgcacc cgggccgcgg cgtcaagacc ccagccgtcg tccgcaaacc
     3601 ccgccggatc atcaccgccg aacagttcca gcacctgcac gacacgctgc ccgacccgac
     3661 catgcggctc ctggtcgaga ccgacatcga gtccggcctg cgctggggag aactgaccga
     3721 actgcgggcc agggatctcg acatcccgac cgggatgctc accatcgccc ggaccgtgat
     3781 ccacctgcgg tcggcgaccc gccccagcga cgcccacttc ctggtcaagg actaccccaa
     3841 ggacgccgag tggcgacagg tcaagctcgc cgcgcacctc gtggccaagc tcgacctgca
     3901 tatcaccgcc caccagctgg gctcggagga tctgctgttc ccccaacccc aacccaccgg
     3961 ccccgcacgg cgacgccgcc cagacgtact cccccacccg agcaccctcg ggcgcaccga
     4021 accgaacgcc aacggccgca gctaccccca cggcaccctc acggcctacc aggccggccg
     4081 ctgccggtgc atccattgcc gtgacgccgt cgccgcgtac cgcgccgccc gtcgggcggc
     4141 cggcaaggac gctccccgcc gtcgccgcac catcgcagga gatgggcacc tcagcaacga
     4201 ctggttccgc gcccacgtct ggaagccggc gcttgaagag tcgggcatcg gcctccggat
     4261 caccccccac ggcctcaggc acgcccacgc gtcctggcta caagcgcgcg gaattgcatc
     4321 tgatgcatca ttcggcaggt ttggtgatcg ggacccggta agggatctcg gtttccgaac
     4381 ggggcggccg gcccggtggc ggtgcgggcg acacgccctc tgacctgggg tgtgatcgcc
     4441 ag
//
LOCUS       DASYFY010000533         4048 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_352941, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000533 DASYFY010000000
VERSION     DASYFY010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352941"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VGN19_10830"
     CDS             <1..207
                     /locus_tag="VGN19_10830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006142266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEV7196426.1"
                     /translation="ELWFAESPADVEFAKSLCHTCPALRACLAGAIDRSEPWGVWGGE
                     LFVQGAIVARKRPRGRPRKNPVAA"
     gene            258..389
                     /locus_tag="VGN19_10835"
     CDS             258..389
                     /locus_tag="VGN19_10835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196427.1"
                     /translation="MFQALYADLARARRGRRQREYLRRLEVQAQRELLQSLPRMLAR"
     gene            519..1112
                     /locus_tag="VGN19_10840"
     CDS             519..1112
                     /locus_tag="VGN19_10840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HhH-GPD-type base excision DNA repair protein"
                     /protein_id="HEV7196428.1"
                     /translation="MSAQIRIAQDPAADEVLSADPFALLVGMLLDQQYPMEHAFRGPW
                     KIRDRFGTLAPDAIAAAEPDAFADLCSTPPAIHRYGRSMAGRVQQLATTVRDQYDGRA
                     ETIWTGASDTPDLLRRLRDLPGFGDQKARIFAALLGKRLEVRPAGWQEAIGPYAEDGS
                     YRSVADVVDAESLKKVREFKQAAKAQAKAKAASVARD"
     gene            1105..1287
                     /locus_tag="VGN19_10845"
     CDS             1105..1287
                     /locus_tag="VGN19_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196429.1"
                     /translation="MTDPEAPPVCASCGAVATDVALARLNWTRGTENGRDIWTCDRCS
                     RQYLRSIEGKLDSAWW"
     gene            complement(1385..2722)
                     /locus_tag="VGN19_10850"
     CDS             complement(1385..2722)
                     /locus_tag="VGN19_10850"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HEV7196430.1"
                     /translation="MSDIPGRAMSRTARLASLPLGYAGRTALGLGKRIGGKPAEAVAA
                     ELQARTAEQLFKVLGELKGGAMKFGQAMSVMEAALPEELAGPYRATLTKLQESAPALP
                     AATVHAVLAEELGPRWRTSKFQSFDDTPAAAASIGQVHKAIWRDGREVAVKIQYPGAG
                     KALLADLNQLARVARIAGSWIPGMDIKPITDELKSRMSEELDYNLEASNQRRFAKVFR
                     DDLHFAVPDVLSHSEHVIVSEWMDGTPLSQIVSSGTPEQRNAASSRYMEFLLVGPARA
                     GLLHADPHPGNFRLLDDGRLGVIDYGAVNRLPGGLPAAMGSLVAAALCGEAGELERGL
                     RTEGFIKPSMTLDAEALLEYLQPFIEPLTHETFTFSRPWLRSVAAHVNDVRRPEFLVG
                     MKLNLPPSYLLIHRVWLGGIGVLCQLGGTAPAREIVVDHLPGMQLRHLPPPVV"
     gene            complement(2719..3705)
                     /locus_tag="VGN19_10855"
     CDS             complement(2719..3705)
                     /locus_tag="VGN19_10855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196431.1"
                     /translation="MTPRPLLRCLWPVLRRGGGEVQLGIDPTRSVVVHGLSEPQIAAL
                     ESLDGTRVLPQVLAEDAALLTLLRRHGLVAEVEDHPDIPVELRAGLASEAEAVMRTTG
                     PGQGYAALARRRAASVLVAGHGPLPSAVATLLRRASVGRVLVGNDALDDAEHLITSPA
                     SPHPSLVVLVAAQAVGPGLAEPWRRRGVPVLPVVMHLVEAMVGPLVGPDGPDGPCLRC
                     LDLTRADLDSAWPMLASQLARPAVGRGPEVGGQTALVAVTAGLACMVTLAVLDGQGVP
                     AGRSLEVALPWPGVRQRQWQVHPRCSCHQSRHPDASGQPAASAHRPQGTMVP"
     gene            complement(3874..4032)
                     /locus_tag="VGN19_10860"
     CDS             complement(3874..4032)
                     /locus_tag="VGN19_10860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HEV7196432.1"
                     /translation="MADETYKGEFYCVKCKEKREAEGRVVETNGRRMAKGVCPVCGTN
                     LNRILGKA"
BASE COUNT          604 a         1421 c         1420 g          603 t
ORIGIN      
        1 gagctgtggt ttgccgagag cccagccgat gtcgagttcg cgaagtcgct gtgccacacc
       61 tgcccggctc tgagggcctg cctggccggg gcgatagacc gctcggagcc ctggggcgtc
      121 tggggcggcg agctgttcgt ccagggcgcg atcgtggccc gcaagcggcc tcggggacgc
      181 ccgcgaaaga acccggtggc cgcatgacca cggctaccga ccgacctgtc accacgtcat
      241 ccgtcaggag ttccaccatg ttccaggcct tgtacgccga cctggcgcgc gcccgtcgcg
      301 ggcgccgcca acgggagtac ctgcgccggc tcgaggtaca ggcgcagcgc gagctgctgc
      361 agtccctgcc tcgcatgctg gcccggtgac cccgtggccc gaacccgccg ggacccccgc
      421 tctggggagt cccggcgggt tcttctatgt cgggttcctt gggtcccacg agtccgacgc
      481 ccttcgtgtc cgcgcgcctc gtggctaggc tgacgcccat gtccgcgcag atccgcatcg
      541 cccaggaccc ggccgccgac gaggtgctca gcgccgaccc gttcgccctc ctagtcggca
      601 tgctgctcga ccagcagtac cccatggagc acgccttccg cgggccctgg aagatccgcg
      661 atcggttcgg gaccctggcc ccggacgcga tcgccgcggc cgagcccgac gccttcgccg
      721 acctgtgctc caccccgccc gccatccatc ggtacggccg gtcgatggcc ggaagggtcc
      781 agcagctcgc gactaccgtt cgcgaccagt acgacggtcg ggcggagacc atctggaccg
      841 gcgccagtga cactcctgac ctgctgcgac gcctgcggga cctgccgggg ttcggcgacc
      901 agaaggctcg gatcttcgcc gcactgctgg gcaagcggct cgaggttcgg cccgcgggat
      961 ggcaggaggc catcggcccg tatgccgagg acggctccta tcgttcggtg gcggacgtgg
     1021 tcgatgcgga gtcgctgaag aaggtgcgcg agttcaagca ggcggccaag gcgcaggcga
     1081 aagccaaggc cgcctcggtt gcccgtgact gaccccgagg ccccgccggt ctgcgcctcc
     1141 tgcggtgcgg tcgccacgga cgtcgcgctg gccaggctga actggacccg tggcaccgag
     1201 aacggtcgtg acatctggac ctgcgaccgc tgcagccgtc agtacctgcg cagcatcgag
     1261 ggcaagctcg actccgcctg gtggtgagca gtggtggtga gaagcccgtg gtgagcagtg
     1321 gtggtgagaa gcccgtggtg agaagcccgt cgtgagcagc ctggtggtga gcccgttccg
     1381 ctgctcagac gaccggcggc gggaggtgac gcagctgcat acccggcagg tggtcgacca
     1441 cgatctcgcg tgccggtgcc gtcccgccca gctggcagag caccccgatg cccccgagcc
     1501 agacccggtg gatgagcagg tacgacggcg gcaggttgag cttcatcccg acgaggaact
     1561 cgggtcgccg aacgtcgttg acgtgagccg ccacgctgcg caaccagggt cggctgaagg
     1621 tgaacgtctc gtgcgtcagc ggctcgatga aaggttggag gtactccagc agcgcctcgg
     1681 catccagcgt catcgacggc ttgatgaagc cctcggtccg cagcccgcgt tcgagctcgc
     1741 ccgcctcgcc gcacagcgcg gctgccacca gtgaacccat cgccgcagga aggccgcccg
     1801 gcaagcggtt caccgccccg tagtcgatga cccccagccg accgtcgtcg agcagccgga
     1861 agttccccgg gtgcgggtcg gcgtgcaaaa gccccgcccg cgccggccct accagcagaa
     1921 actccatgta ccggcttgag gcggcgttgc gctgttctgg agtcccggac gacacgatct
     1981 gcgagagcgg ggtaccgtcc atccactcgg agacgatgac gtgttcgctg tggctgagca
     2041 cgtccgggac cgcgaagtgc aggtcgtcgc ggaagacctt ggcgaaccgg cgctggttgg
     2101 acgcctccag gttgtagtcg agctcctcgc tcattcggga cttgagctcg tcggtgatcg
     2161 gcttgatgtc catgccggga atccagctgc ccgcgatccg tgcgacgcgg gcgagctggt
     2221 tcaggtcggc cagcagggcc ttgccggccc ccgggtactg gatcttgacc gccacctcac
     2281 ggccgtcgcg ccagatggcc ttgtgcacct ggccgatgga cgccgctgcg gcgggggtgt
     2341 cgtcgaaaga ctggaacttc gaggtgcgcc agcgcgggcc gagctcctcg gcgaggacgg
     2401 catgcacggt ggccgccggc agcgccgggg cggactcctg gagcttcgtg agggtcgctc
     2461 gatagggccc ggcgagctct tcggggaggg cggcctccat caccgacatg gcctggccga
     2521 atttcatcgc gccgcccttg agctccccca gcaccttgaa gagctgctcg gccgttcggg
     2581 cctgcagctc cgcagcgaca gcctcggcgg gcttgcctcc gatgcgtttg cccaggccaa
     2641 gggcagtacg cccggcatag cccaagggca ggctggccag tcgggccgtg cggctcatgg
     2701 cacggccggg gatgtcgctc acgggaccat tgtcccctgt ggtcgatggg cactcgcggc
     2761 aggctggccc gacgcgtcgg ggtggcggct ctgatggcag gaacatcggg ggtgaacctg
     2821 ccactgccgc tgccggaccc ccggccacgg cagtgccacc tcgagcgagc gcccagccgg
     2881 cactccctgc ccgtccagga ccgcgagtgt caccatgcac gccaggccgg cagtcacagc
     2941 cacgagcgcg gtctggccac cgacctcggg cccccggcca accgccggcc gcgccagctg
     3001 actggccaac atcggccagg cggagtcaag gtcggcgcgg gtgaggtcca gacaacgtag
     3061 acacggtccg tccggtccgt ccggtccgac caagggaccc accatggctt cgaccagatg
     3121 catgacgacc ggcaggacgg gaacaccgcg tctgcgccac ggctcggcaa gcccagggcc
     3181 gaccgcctga gccgcgacga gcaccaccaa cgaagggtgg ggcgacgcag ggctggtgat
     3241 gaggtgttcg gcgtcgtcca gggcgtcgtt gccgaccagc acccggccca cggaggcgcg
     3301 gcgcagcagc gtcgcgacgg cggacggaag cggcccatgc ccggcgacga gcacggatgc
     3361 ggcgcggcgg cgggccaggg cggcataccc ctggcctggg ccggtcgtgc gcatcacagc
     3421 ctccgcctcg ctggccaggc cggcccgcag ctccaccggg atgtcggggt ggtcctcgac
     3481 ctcggcgacc aggccgtgtc gtcgcaggag ggtgagcaag gcggcgtcct cagcgagaac
     3541 ctgtggcagg actcgggtcc cgtcgaggga ctccagggcg gcgatctgcg gctcgctcag
     3601 tccatgcacg acaaccgaac gagtcgggtc gatgccgagc tgaacctcac ctccgccgcg
     3661 gcgcaggacg ggccagaggc acctgaggag cggtcgtggg gtcaccttcg tcaatcttgc
     3721 acagcgtgcc ggggtggttc gtgcgtcatc cacagcctgc tccgaccacc caccaccgaa
     3781 gtccttgggc ggcgctgcct acgccgagag gggcggaccc gaccaccttg gtcgtgtccg
     3841 cccctccagg cgttgttagg caggcagcct ggctcaggcc ttgccgagaa tgcggttgag
     3901 gttcgtgccg cagacggggc agacgccctt ggccatgcgg cggccgttcg tctccacgac
     3961 gcggccctcg gcctcgcgct tctccttgca cttcacgcag tagaactcgc ccttgtaggt
     4021 ctcgtcagcc atcgccaatg tctccttg
//
LOCUS       DASYFY010000534         1608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_774266, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000534 DASYFY010000000
VERSION     DASYFY010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_774266"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1301)
                     /gene="topA"
                     /locus_tag="VGN19_10865"
     CDS             complement(<1..1301)
                     /gene="topA"
                     /locus_tag="VGN19_10865"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018135100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEV7196433.1"
                     /translation="MPPKKSSRTPTGNKLVIVESPAKAKTIGGYLGAGYTVEASIGHI
                     RDLPRNAADVPAAYKGQPWARLGVNTEADFEPLYVVSPDRKAQVTKLKALVKQADEVY
                     LATDEDREGEAIAWHLVQTLKPTVPVRRMVFHEITPQAISRAVAEPREIDAHLVDAQE
                     TRRILDRLYGYEVSPVLWKKVLPKLSAGRVQSVATRIVVERERQRMAFHTANYWDIEG
                     TFAPAVRKQGDPETFSAQLVALGDERIATGRDFDPATGRASSDVLHLDEAGARGLAAR
                     LEGVDFAVTRVEEKPYRRRPYAPFMTSTLQQEAGRKLRWSSQVTMRVAQRLYENGLIT
                     YMRTDSTNLSETAITAARAQARELYGDAYVPAEPRRYSRKVKNAQEAHEAIRPSGDTF
                     RTPGQLAGHLSSEEFRLYEMIWQRTLASQMADAVGTSISVRL"
BASE COUNT          202 a          533 c          603 g          270 t
ORIGIN      
        1 agccgcaccg agatcgaggt gcccaccgca tcggccatct gcgaggccag cgtgcgctgc
       61 cagatcatct cgtagagccg gaactcctcg ctggacagat gaccggcgag ctgtccaggc
      121 gtgcggaacg tgtcgccgga ggggcggatc gcctcgtggg cttcctgggc gttcttcacc
      181 ttgcgcgagt accggcgcgg ctcagcgggg acgtaggcgt cgccgtagag ctcgcgggcc
      241 tgcgcccggg cagcggtgat cgccgtctcc gagaggttcg tggagtcggt acgcatgtag
      301 gtgatcaggc cgttctcgta cagccgctgg gcgacccgca tggtcacctg ggacgaccag
      361 cgcagcttgc ggccggcctc ctgctgcagc gtcgaggtca tgaacggggc gtagggccgg
      421 cgacggtagg gcttctcctc gacccgggtg acggcgaagt cgacgccttc caggcgcgcg
      481 gccagcccgc gggctccggc ctcgtcgagg tggagcacgt cgctggacgc gcgaccggtc
      541 gccgggtcga agtcgcgtcc ggtggcgatc cgctcgtcgc cgagggccac cagctgcgcg
      601 ctgaacgtct ccgggtcgcc ctgcttgcgc accgccggcg cgaaggtgcc ctcgatgtcc
      661 cagtagttgg cggtgtggaa ggccatccgc tggcgctcgc gctccacgac gatgcgggtg
      721 gccactgact ggacccgacc ggccgacagc ttgggcagca ccttcttcca cagcaccggc
      781 gacacctcgt agccgtacag gcggtccagg atgcgccggg tctcctgcgc atcgacgagg
      841 tgcgcgtcga tctcgcgcgg ctcggcgacc gcgcgcgaga tcgcctgcgg ggtgatctcg
      901 tggaacacca tccgccggac cgggacggtc ggcttgaggg tctgcaccag gtgccaggcg
      961 atggcctcgc cctcgcggtc ctcatcggtg gcgaggtaga cctcgtcggc ctgcttcacc
     1021 agcgccttga gcttggtgac ctgcgccttg cggtccgggc tcaccacgta gaggggttcg
     1081 aaatccgcct cggtgttcac cccgagcctg gcccagggct gccccttgta ggcggcaggc
     1141 acgtcggcgg cgttgcgcgg caggtcacgg atgtgaccga tggaggcctc gacggtgtag
     1201 cccgcgccca ggtagccgcc gatcgtcttg gccttggcgg gggactcgac gatgaccagc
     1261 ttgttaccgg tgggcgtcct gctgctcttc ttgggtggca ctgcgttctc ctgtctgcgc
     1321 tgccttgcgg cagccgggtg gtcgccgtcg cgggcgacct tcgctgtggt ggtgtcgttg
     1381 ccgtccggtc cgccgggtgc acggtggaac ggtcgacatg gcgacgcacg gcggacggta
     1441 ccgcacgtct ctgtccgatc gtgcgaccag gcgaggctga gactccactc gttgccgtcc
     1501 agtcggaggc tgaggcgagc gctggggcgg gtgcagggcc cccgagctgg ggcgggtgca
     1561 ggaccccaag ctggggcggg tgcagggccc cgagctgggg cgggtgca
//
LOCUS       DASYFY010000535         2997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_984972, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000535 DASYFY010000000
VERSION     DASYFY010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_984972"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2222)
                     /locus_tag="VGN19_10870"
     CDS             complement(<1..2222)
                     /locus_tag="VGN19_10870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006946784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HEV7196434.1"
                     /translation="MTLAPLLDALVGDPGIARALAVAKRPEAKADITVPAGARPALIA
                     ALARESGRPLLAVTATTREAEDLVSALGCFLDPNRVADFPAWETLPHERLSPRSDTVG
                     KRLAVLRRLAHPDQTDPAYGPLDVVVAPVRAVLQPVATGLGELAPVFLKAGDEAPLED
                     VVADLAAAAYTRTDLVERRGEFAVRGGILDVFPPTEDHPVRVEFWGDTVEEIRWFKVA
                     DQRSLEIAEHGLWAPPCREVLLTEAVRDRARALMDQLPGAVDLLGKLAEGIAVEGMES
                     LAPALVDGMESVLDTLREGTAIVVCDPERVRTRAHDLVATTQEFLEAGWANAAAGNAV
                     PIDLEGILGTASFWSLADLRAHAYTSGMPWWDLGPFVADEELAEDDAAVVNSGLEEAP
                     RYRGSTPDAVADLQRWVTQGWRVVVVTEGPGLARRVAEVLADESVAARLDADLTDLSD
                     GVVHLTTGTIGSGFLSAASRFALITETDLTGTPGQGGSTKDMRKMPSRRRNQVDPLQL
                     KPGDFVVHEQHGVGKFVEMMQRTIGGATREYLVIEYAASKKGQPADRLFVPTDQLDQV
                     TRYVGGEQPTLNRMGGSDWQKTKGRARKYVKQIAAELIQLYSARMATTGHAFAPDTPW
                     QRELEDAFAYVETPDQLSSIDEVKADMERTVPMDRLICGDVGYGKTEIAVRAAFKAIQ
                     DGKQVAVLVPTTLLVQQHLQTFTERYAQFPVTVRALSRFQSDKEARETMAGLEQGSVD
                     L"
     gene            complement(2423..2854)
                     /locus_tag="VGN19_10875"
     CDS             complement(2423..2854)
                     /locus_tag="VGN19_10875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196435.1"
                     /translation="MGELEESVGVSRRTALKGAAGVAWMVPVVIVVAAPSAAAASGPP
                     PEGGGGGTGGGGETGGGGQTGGGGGQTGGGGGTTPVVSHPVAGSPQAAAAIPAGPTLA
                     FTGANIVDLAALGAVVTAVGAASVAAGSRLRRAEAEAEDSL"
BASE COUNT          449 a         1102 c         1008 g          438 t
ORIGIN      
        1 aggtcgacgc tgccctgctc caggccggcc atcgtctcgc gggcctcctt gtcgctctgg
       61 aaccgcgaca atgcccggac cgtcacgggg aactgcgcat accgctcggt gaacgtctgc
      121 aggtgctgct gcacgagcag cgtggtcggg acgagcacag cgacctgctt gccgtcctgg
      181 atcgccttga acgccgcccg caccgcgatc tcggtcttgc cgtagccgac gtcaccacag
      241 atcagccgat ccatcgggac ggtccgctcc atgtcggcct tgacctcgtc gatggagctc
      301 agctggtcgg gggtctcgac gtaggcgaag gcatcctcga gctcccgctg ccagggcgtg
      361 tccggggcga aggcatggcc ggtggtggcc atgcgcgcgg agtagagctg gatcagctct
      421 gccgcgatct gcttgacgta cttgcgagcc cggcccttcg tcttctgcca gtcgctgccg
      481 cccatccggt tgagcgtggg ctgctcacca ccgacatagc gagtgacctg gtcgagctgg
      541 tcggtcggca cgaacagccg gtcggccggc tgtcccttct tggacgccgc gtactcgatg
      601 accaggtact cccgggtcgc gccaccgatg gtgcgctgca tcatctcgac gaacttgccc
      661 accccatgtt gctcatggac cacgaagtca cccggcttga gctggagcgg gtcgacctgg
      721 ttacgccgcc gcgacggcat cttgcgcatg tccttggtcg agccaccctg accgggagtc
      781 ccagtcaggt cggtctccgt gatcagggcg aaccggcttg cggcagagag gaacccacta
      841 ccgatggtgc cagtcgtcag gtgcacgaca ccatcggaca ggtcggtcag gtcggcatcg
      901 aggcgcgcag ccaccgactc gtcagccagg acctcggcga cgcgtcgagc cagccccggc
      961 ccctcggtga cgacaacgac ccgccagccc tgggtcaccc agcgctgcag gtccgccacg
     1021 gcatcgggcg tactcccgcg gtagcggggc gcctcctcca gccccgagtt cacgaccgcc
     1081 gcgtcgtcct ccgcgagctc ctcgtcggcc acgaagggtc cgaggtccca ccacggcata
     1141 cccgaggtgt aggcgtgcgc ccgcaagtcg gcgaggctcc agaacgaggc ggtgccgagg
     1201 atgccctcca ggtcgatggg gacggcgttg cctgcggcgg cgttggccca gccggcctcg
     1261 aggaactcct gggtcgtcgc gaccaggtcg tgagcgcggg tgcgaacccg ctcggggtcg
     1321 cagaccacga tcgcggtgcc ctcgcgcagg gtgtccagga cactctccat gccgtcgacg
     1381 agcgcaggcg cgagcgactc catcccctcc acggcgatgc cttcggcgag cttgccgagc
     1441 aggtccaccg caccggggag ctggtccatc agcgcgcggg ctcggtcacg gaccgcctcg
     1501 gtcagcagga cctcgcgaca gggcggcgcc cacagaccgt gctcggcgat ctcgaggctg
     1561 cgctggtcgg cgaccttgaa ccagcggatc tcctccaccg tgtcacccca gaactccacc
     1621 cggaccggat ggtcctcggt cggggggaac acgtcgagga tgccgccgcg gacggcgaac
     1681 tcaccacggc gttcgaccag gtcagtgcgc gtgtaggccg cggcggccag gtcggcgacc
     1741 acgtcctcga gaggggcttc gtcgccggcc ttgaggaaga cgggggccag ctctccgagg
     1801 cccgtggcaa ctggctgcag gactgcccgg acgggggcca ccacgacgtc cagcggcccg
     1861 taggcagggt cggtctggtc ggggtgggcg agccggcgga gcaccgcgag gcgcttgccg
     1921 acggtgtcgc tgcgggggct gaggcgctca tgcggcaggg tctcccacgc cggaaagtct
     1981 gcgacgcggt tggggtccag gaagcacccg agagcactga ccagatcctc cgcctcgcga
     2041 gtggtcgccg tgacggcaag caacggtcgg ccactctcgc gcgccagcgc cgcgatcaac
     2101 gccggccgag cgccagccgg gaccgtgatg tccgccttcg cctccgggcg cttggcgacc
     2161 gccagcgcac gcgcgatccc cggatcgccg acgagcgcat cgagcagcgg ggcgagagtc
     2221 atgacgggct cctggggaca gcacgaacgc cccacgacga atgtcgatgg ggtggtcacc
     2281 accctaaccg cggcgctgct cccctcgcac cggcgcactc tccacagccg ttcacgctgg
     2341 catcggcacg ctcgcgcacc tccagctggc gcggggcttg cgcgcaggtc cgtctccccc
     2401 ggaccagcgc gcgccccgca gcttagagcg agtcctcggc ctcagcctcg gctcgacgca
     2461 agcgcgaacc tgccgcgacg ctggctgcgc cgacggccgt gaccaccgca ccgagtgcgg
     2521 ccagatccac gatgttggct cctgtgaagg ccaaggtggg gccggccgga atggccgcag
     2581 ccgcctgcgg acttccggct accgggtggg agaccacggg tgtcgtgccg ccgcctccac
     2641 cggtctgacc accgcccccg ccggtctgac cgccgccccc ggtttcgcct ccgccaccgg
     2701 tccctccgcc gccaccctca ggaggtgggc ccgacgccgc cgcggccgac ggcgctgcga
     2761 ccacgatgac caccggcacc atccaggcca cccccgcagc ccccttgagt gccgtacgac
     2821 ggctgacgcc gaccgattcc tcgagttcac ccatggcccc gcaccttccc cgcaaaagtt
     2881 ggtaatgcaa tcgtaaagat cgcaggtcac cccccacacc gacgaatgct ctagtcggct
     2941 atcagccgtc ctgcgtagac agggcgtggt gcccatcggg tctggagtgg gcccgct
//
LOCUS       DASYFY010000536         1726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_512058, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000536 DASYFY010000000
VERSION     DASYFY010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512058"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..741)
                     /locus_tag="VGN19_10880"
     CDS             complement(<1..741)
                     /locus_tag="VGN19_10880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEV7196436.1"
                     /translation="MVTKNLSERIPRDPDPDGLYEVFTEWTTERGLTLYPHQEEAFLE
                     ILSGSNLILSTPTGSGKSLVATAAHLTALADDRVSFYTAPIKALVSEKFFALCEQFGA
                     DNVGMITGDASVNADAPIICCTAEILANLALREGSSADVGLVVMDEFHFYSEPDRGWA
                     WQVPIIELPQAQFVLMSATLGDVTMFRDDLTRRTGRSTAVITGTERPVPLEFSYAVTP
                     LHETIEELLAKDRAPVYVVHFTQAAALER"
     gene            866..>1726
                     /locus_tag="VGN19_10885"
     CDS             866..>1726
                     /locus_tag="VGN19_10885"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEV7196437.1"
                     /translation="MELTSGTLLVVLGLAAAIVFVLLVLGYPRVRRRWVGALVRGSEA
                     LVLSLTVLVFAGAVLNDQYLFYISWSDLFGSGSTVTAAHAGGTARQAVEAKARGQGLA
                     HVGVPAVLPPLPAPGQRVQRYTVTGAQSHISAEVLVYLPPGYEPAAAKKYPVVLALHG
                     FPGSPDGFLQSLLLGQTVDELTFARQLGPSIVVLPEINSPVSLDTECVDAPNTGGPQA
                     ETWLARDIPEWVVGHFHVQTARTSWATLGYSFGGWCSALLGLRHPDVFAASIVIGGYF
                     RPDFSRSYDPL"
BASE COUNT          241 a          601 c          613 g          271 t
ORIGIN      
        1 gcgctcgagg gcggccgcct gcgtgaagtg gacgacgtag acgggcgcgc ggtcctttgc
       61 gaggagctcc tcgatggtct cgtggagggg cgtcacggca tacgagaact cgagggggac
      121 cgggcgctcg gtcccggtga tgacggccgt ggagcggccg gtgcgccggg tgaggtcgtc
      181 cctgaacatc gtgacgtcgc ccagggtggc cgacatgagg acgaactgag cctgcggcag
      241 ctcgatgatc gggacctgcc aggcccagcc gcggtcgggc tcggagtaga agtggaactc
      301 gtccatgacg acgagcccca cgtcagcgga gctgccctcc cgcagcgcga ggttcgcgag
      361 gatctccgcc gtgcagcaga tgatcggggc gtccgcgttg accgacgcgt cgccggtgat
      421 catgccgacg ttgtccgcgc cgaactgctc gcagagggcg aagaacttct cggagacgag
      481 cgccttgatc ggcgcggtgt agaagctgac gcggtcatcg gcgagcgcgg tgaggtgggc
      541 cgcggtggcg acgagtgact tccccgagcc cgtgggcgtc gacaggatga ggttgctgcc
      601 gctgaggatc tcgaggaacg cctcctcctg gtgcgggtag agggtcaggc cgcgttcggt
      661 cgtccactcg gtgaagacct cgtagaggcc gtcgggatcg gggtcccgcg ggatgcgctc
      721 gctgaggttc ttcgtcacca cgcgagtatg ccgtcgcgcc gggtcgtgcg acgaacgcac
      781 cggatccgta cgggcggctc ccggccaatc cccaaccgag ccccagcgcc cgtggctagc
      841 gtggagaagg gggcaaggag gagccatgga gctcacgagc ggcacgctgc tcgtcgtgct
      901 gggcctggcc gcggccatcg tcttcgtcct gctggtgctc ggctaccccc gcgtgcgccg
      961 ccggtgggtg ggcgccctgg tgcgcggctc ggaggccctc gtgctcagcc tcaccgtcct
     1021 ggtcttcgcc ggagccgtcc tcaacgacca gtacctcttc tacatcagct ggagcgacct
     1081 cttcgggtcc ggctccacgg tgacggcggc gcatgccggg ggaacggcac gccaggcggt
     1141 cgaggccaag gccagggggc aggggctggc acacgtcggc gtgcctgccg ttctcccgcc
     1201 ccttcccgca cccgggcagc gcgtccagcg ctacacggtg acgggcgcgc agagccacat
     1261 cagcgccgag gtcctcgtct acctcccccc gggctacgaa ccggcagccg ccaagaagta
     1321 ccccgtggtc ctggcgctgc acggcttccc gggcagcccg gacggcttcc tccagagcct
     1381 gctcctgggc cagaccgtcg acgagctgac cttcgcacgg cagctcggtc cctcgatcgt
     1441 cgtcctgccc gagatcaaca gccccgtctc gctcgacacg gagtgcgtgg acgccccgaa
     1501 cacaggcggg ccgcaggccg agacctggct ggcgcgcgac atccccgagt gggtcgtggg
     1561 ccacttccac gtgcagaccg ctcggacgtc ctgggcgacg ctcggctact ccttcggtgg
     1621 ctggtgctcg gccctcctcg gcctgcgcca cccggacgtc ttcgccgcct ccatcgtgat
     1681 cggcggctac ttccgacccg acttctcccg ttcctacgac ccactg
//
LOCUS       DASYFY010000537         2199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1720684, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000537 DASYFY010000000
VERSION     DASYFY010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1720684"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1231)
                     /locus_tag="VGN19_10890"
     CDS             complement(<1..1231)
                     /locus_tag="VGN19_10890"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196438.1"
                     /translation="MSTQAPPAGTPELLRMDSHKGRLVLATTVLGSGVALLDGTIVNV
                     ALPTIGRNLNADLAGLQWVVNAYALALAALILLGGSLGDRFGRRRMYAVGVGGFGLVS
                     ILCAAAPTIGGLVAARAVQGVCAALLVPGSLAILQASFHRDDRMAAIGAWTGLLGVAT
                     ASGPVVGGWLVEHSWRWAFWLNVPLSLVVVALALTVVPESRNPHSDKHFDVAGVLLAV
                     VGLAAVTYALTVVPRRPGLMPLLVGALGLLALGGFVVVERRFSHPLVPPSLFTNRVFT
                     AINLVTLLVYAGLSAALLFLVLFLQTVGRWTALQAGSATLPLSLLMLALASRFGRLAA
                     RHSPRPYMVGGTLTTAAGFVVLAVVPRDPSFLLNVLPGITLVGLGLAMTVAPLTGTVL
                     AAAPDDLAGTASGVNNAV"
     gene            1269..2129
                     /locus_tag="VGN19_10895"
     CDS             1269..2129
                     /locus_tag="VGN19_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEV7196439.1"
                     /translation="MPELPEVQALVDFLGERVMGLAVTAVELGSFSVLKTFDPPPQAL
                     AGVPVDAVGRHGKFIDLDCDGIHLVFHLARAGWLRWSDAMPNTVLRPGKSPIALRARF
                     SDGSGFDLTEAGTKKRLAAYLVRDPHEVPGVATLGPDPLSDDFTREAFGALLAGKRAQ
                     LKGLLRDQGFIAGVGNAYSDEILHVAKMSPFAMASGLDDVAVDRLYAALRSTLAGAVQ
                     AASGKPAAELKDAKRSGMRVHGRTGQECPVCGDVVREVSFADSSLQYCATCQTGGKPL
                     ADRRMSRLLK"
BASE COUNT          356 a          765 c          782 g          296 t
ORIGIN      
        1 cgacggcgtt gttgacgccg ctggccgtgc cggcgagatc gtccggggcg gccgcaagga
       61 ccgtcccggt cagtggggct acggtcatcg ccagcccgag cccgaccagg gtgatgcctg
      121 gaagcacgtt cagcaggaac gatgggtctc tgggaaccac ggccaggacg acgaagcccg
      181 ctgcggtcgt cagggtgccg cccaccatgt acggcctcgg gctgtgccgc gcggcgaggc
      241 ggccgaaccg gctcgcgagc gccagcatga gcaggctcag tggcaaggtg gcgctgcccg
      301 cctgcagcgc ggtccatcgg cccacggtct gtaggaacag caccaggaac agcagcgccg
      361 ccgacaggcc cgcgtagacc agcagggtga ccaggttgat ggcggtgaag acccggttcg
      421 tgaacaggct tggtggcacc aatggatggg agaagcgacg ctcgacgacg acgaagccgc
      481 ctagagcgag cagtcccagg gcgccgacca gcagcggcat gagccccggc cgccgcggaa
      541 cgacggtcag ggcataggtg acggcggcca gcccgaccac ggccagcagc actccggcca
      601 cgtcaaagtg cttgtcggag tgcgggtttc gcgactcggg gacgacggtg agggccagtg
      661 cgacgactac cagcgacagg ggcacgttca gccagaacgc ccatctccag ctgtgctcga
      721 cgagccagcc gcccacgacc gggcccgagg cggtggcaac ccccagcagg ccggtccacg
      781 cgccgatggc cgccatccgg tcgtcgcggt ggaaggaggc ctggaggatc gccagactgc
      841 ccgggacaag cagcgcggcg cagacgccct ggaccgcccg ggcagccacc agtccgccga
      901 tcgtcggggc agccgcacag aggatggaca cgagcccgaa cccgcccacg cccacggcat
      961 acatccgtcg tcggccgaac cggtccccga gcgaaccacc cagcaggatc agcgccgcca
     1021 gcgccagcgc ataggcgttg accacccact gcagcccggc gaggtcggcg ttcaggttcc
     1081 gcccgatggt ggggagcgcg acgttgacga tggtcccgtc gagcagcgcg actccgctgc
     1141 cgagaacggt ggttgccagc acgagacgcc ccttgtggga gtccatgcgg agcagctccg
     1201 gagtcccagc gggaggcgcc tgggtcgaca tgccgcccat cgtcccaccg ctgggccaca
     1261 atggcgtggt gccagagctg cccgaggtcc aggcgctcgt cgacttcctc ggcgagcggg
     1321 tcatgggcct cgccgtgacc gcggtggagc tcgggtcgtt ctcggtgctg aagaccttcg
     1381 acccgccccc gcaggcgctc gcaggggtgc ccgtggacgc ggtgggacgt cacggcaagt
     1441 tcatcgacct cgactgcgac ggcatccatc tggtgttcca tctcgcgcgc gccggatggc
     1501 ttcgctggtc cgacgcgatg cccaacacgg tgctgcgccc cgggaagtcc ccgatcgccc
     1561 tgcgcgcccg gttctccgac ggctcggggt tcgacctgac cgaagccggc accaagaagc
     1621 ggctcgcggc atacctcgtg cgcgaccctc acgaggtgcc cggagttgcc acgctcgggc
     1681 cggacccgct ctccgatgac ttcacccgtg aggcgttcgg cgccctgctg gctggcaagc
     1741 gggcccagct caagggactg ctgcgcgacc aaggcttcat cgccggagtg ggcaacgcct
     1801 actcggacga gatcctgcac gtcgcgaaga tgtcgccgtt cgcgatggcg tccgggctcg
     1861 atgacgtggc ggtggaccgg ctgtatgccg cgttgcgctc cacccttgct ggcgcggtcc
     1921 aggccgcgtc cggcaagccc gccgccgagc tcaaggacgc gaagcgttct gggatgcgcg
     1981 tgcatggccg caccggtcag gagtgcccgg tctgcgggga cgtcgtgcgt gaggtgtcct
     2041 tcgcggactc gtcgctgcag tactgcgcca cctgtcagac gggcggcaag ccgctcgccg
     2101 accgtcgcat gtcgcggctg ctcaagtgag gaccaccagc gccgatgaga ggatgggggc
     2161 atgaacgttc cgcaggtctc cgtcaccgag gttcccgac
//
LOCUS       DASYFY010000538         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1038176, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000538 DASYFY010000000
VERSION     DASYFY010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038176"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..917)
                     /locus_tag="VGN19_10900"
     CDS             complement(87..917)
                     /locus_tag="VGN19_10900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEV7196440.1"
                     /translation="MAAPPAVTAPDPAGDDRPRRARRPRWHWIAMAVVLVVAALVTAF
                     LLQGPSAPPVTRGDVTKAVQQGLDQAAKAARDAPPDAEVAYQKALPSLVVITTTEPGG
                     SASGAGVVVSADGSVLTALHVVSAATSITVRFSDGTQSPASIARQEASSDIAVLTPEH
                     PAGVIVPAVLGGGATVGEPIFALGHPLGLTDSLSAGVVSALDRSVRVNATQTLNGLIQ
                     FDAAVNPGSSGGPLLNRDGQVLGIVTGLANPSQQGFFVGIGFAVPISTAGGVAGAPPQ
                     "
     gene            1023..>1538
                     /locus_tag="VGN19_10905"
     CDS             1023..>1538
                     /locus_tag="VGN19_10905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010149338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase"
                     /protein_id="HEV7196441.1"
                     /translation="MDTVVSTVEELRTLQLDRLRWSLSHAYDHVPHYRRAFDASGVRP
                     DDLRSLADLSRFPFTAKADLRANYPFGMFAVPREQVVRVHASSGTTGKPTVVGYTRDD
                     IDTWATVMARSIEAAGGRPGDLLHVIYGYGLFTGGLGAHYGAERLGCTVVPVSGGMTE
                     RQVQLIQDFEPR"
BASE COUNT          215 a          502 c          592 g          229 t
ORIGIN      
        1 agggggcgct gcggccgttg cggctgggaa gtggtgtcca tgcgctctcc tgggggtgct
       61 gggccgttga cgaggtatgc cgtgggctac tgcggcggag cgccggcaac cccgccggcg
      121 gtggagatgg gcacggcgaa accgatgccg acgaagaagc cctgttgcga gggattggcc
      181 aggccggtca cgatgccgag cacctgaccg tcgcggttga gcagcgggcc gccggagctc
      241 cccgggttga cggcggcgtc gaactggatc agtccgttca gcgtctgcgt ggcgttcacg
      301 cggaccgagc ggtcgagggc cgagacgacc ccggcactca ggctgtcggt caggcccagc
      361 gggtggccga gcgcgaagat cggctcgccc accgtggcgc cgccaccgag gactgccggg
      421 acgatgaccc ccgcagggtg ctcgggggtc agcactgcga tgtcgctgga ggcctcttgg
      481 cgcgcgatgc tcgccggcga ctgggtgccg tccgagaagc ggaccgtgat gctggtggcg
      541 gccgagacga cgtgcagggc tgtgagcacc gacccgtcgg cactgacgac cacgcccgcg
      601 ccggaagcgg atcccccggg ctccgtcgtg gtgatgacga ccagcgaggg gagcgccttc
      661 tggtaggcca cctcggcgtc aggcggagcg tcgcgcgcgg ccttggctgc ctggtccaga
      721 ccctgctgga ccgccttggt gacatcgccc cgcgtgacgg gcggggcgct gggtccctgg
      781 aggaggaagg cggtcacgag ggcggccacg accaggacga cagccattgc gatccagtgc
      841 caacgtgggc gacgagcgcg gcggggtcgg tcgtccccgg ccggatccgg cgcggtgacg
      901 gccggcggtg ctgccacctg gcccaccctt cggagggtac gtccgaatcg gtttcgaggc
      961 actgtggcct ggggattcat ggcaagttct caggttgacc cggcggccgt agattgcagg
     1021 ccatggacac tgtcgtctcc accgtcgagg agctgcgcac cctccagctc gaccgcctcc
     1081 gctggagcct gtcgcacgcc tatgaccatg tgccgcacta ccgacgggcc ttcgacgcct
     1141 cgggggtgcg gccggacgac ctcaggtcgc tggccgacct gtcgcggttc ccgttcactg
     1201 ccaaggccga cctgcgagcg aactacccgt tcgggatgtt cgcggtgcct cgcgagcagg
     1261 tggtcagggt gcatgcctcc agcggcacga cgggcaagcc caccgtcgtg ggctacacac
     1321 gggacgacat cgacacgtgg gccaccgtga tggcgcgctc gatcgaggct gccggcggtc
     1381 gcccgggcga cctgctgcac gtcatctatg gctacggcct gttcaccggg gggctggggg
     1441 cgcactacgg cgctgagcgg ctgggctgca cggtggtgcc ggtgagcggg gggatgactg
     1501 agcggcaggt gcagctgatc caggacttcg agccgcgc
//
LOCUS       DASYFY010000539         2727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1669185, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000539 DASYFY010000000
VERSION     DASYFY010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2727
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1669185"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1238)
                     /locus_tag="VGN19_10910"
     CDS             complement(<1..1238)
                     /locus_tag="VGN19_10910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HEV7196442.1"
                     /translation="MTFARFSAQPADTGLYRREFEHDACGVALVATMRGSAGHDIVDH
                     ALTALRNLEHRGATGADPLVGDGAGILTQVPDAFLRATVDFELPVAGAYAVGIAFLPP
                     DEAERSTSVARIEAIAEEEGLRVLGWRDVPVSADLVGQVARDCMPFFRQLFVAASGGR
                     LVGVGLDRLAFCLRKRAERETEVYFPSLSCRTIVYKGMLTTGQLEPFFPDLSDRRFET
                     QLALVHSRFSTNTFPSWPLAHPYRLIAHNGEINTVKGNRNWMRARESQLVSDLIPGDL
                     DRLFPICTPEASDSASFDEVLELLHLGGRSLPHAVLMMIPEAWENHEEMDPTRRAFYE
                     FHSTFMEPWDGPACVTFTDGSLIGAVLDRNGLRPGRYSVTDDGLVVLASEAGVLDLDP
                     SRVVRKGRLQPGRMFLVDTE"
     gene            complement(1388..2269)
                     /gene="lgt"
                     /locus_tag="VGN19_10915"
     CDS             complement(1388..2269)
                     /gene="lgt"
                     /locus_tag="VGN19_10915"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015771502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEV7196443.1"
                     /translation="MTALPTAIPSPTTGVWHLGPFPIRAYALCILAGIVVAVWITGRR
                     LVDRGHSREKAVDISAWAVPFGIVGGRLYHVITTPQPYFGAGGHPLRAFYIWEGGLGI
                     WGAVALGAVGAWIGARRHGVPFLDFADAAVPGVAVAQALGRWGNWFNNELYGRPTNVP
                     WALTIHEWDQSAGRAVRDAAGHPIVLGTFHPTFLYESLWCLLLGLGLVLADRRLSLRR
                     GQIFGLYIAGYPLGRVVFELMRSDEANHILGLRVNVWTSIVVFLFGVYLVWRLRHRDD
                     STVEQPVVHSEVSHSSE"
     gene            complement(2269..>2727)
                     /locus_tag="VGN19_10920"
     CDS             complement(2269..>2727)
                     /locus_tag="VGN19_10920"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEV7196444.1"
                     /translation="RFEQLFGAQVTQLAAQNRVRLVIHTLSFLDDNLRNDSSNRAANA
                     AACAADDGKFLEDHAAVFAGQPAKEGDGYTDAQLTTFAQTAGITGPALQTWQTCYSSK
                     THNQYVHSVQTQSDKDGITGTPTIKINGKAVQLATLSPQSLDATVQANTK"
BASE COUNT          457 a          908 c          975 g          387 t
ORIGIN      
        1 tgctcggtgt cgaccaggaa catccggccc ggctgcaacc gtcccttgcg caccactcgg
       61 gacgggtcga ggtccaggac cccagcctcc gaggcgagca ccacgaggcc gtcatcggtg
      121 acggagtagc ggccgggacg cagaccgttg cggtcgagca ccgcaccgat cagggagccg
      181 tccgtgaagg tcacgcacgc gggaccgtcc cagggctcca tgaacgtcga gtggaactcg
      241 tagaacgcac ggcgggtggg gtccatctcc tcgtggttct cccaggcctc cgggatcatc
      301 atgaggaccg cgtgaggcaa cgaccgacca cccaggtgca gcagctcgag gacctcgtcg
      361 aaggaggccg agtctgacgc ctccggcgtg cagatcggga acagccggtc gaggtcgccg
      421 gggatgaggt cggagaccag ctggctctcg cgggcgcgca tccagttgcg gttgcccttg
      481 acggtgttga tctcaccgtt gtgcgcgatc agccggtacg ggtgcgccag cggccagctc
      541 gggaacgtgt tggtggagaa ccgcgagtgc accagcgcaa gctgggtctc gaaccggcgg
      601 tcggacaggt ccgggaagaa cggctcgagc tgccccgtgg tgagcatccc cttgtagacg
      661 atggtccggc aggacagcga ggggaagtag acctcggtct cgcgctcggc gcgcttgcgc
      721 aggcagaagg ccagccggtc gagaccgacc ccgaccaggc gacccccgga ggcggccacg
      781 aagagctggc ggaagaacgg catacagtcg cgggccacct ggcccacgag gtcggccgag
      841 accggcacgt cgcgccagcc gaggacgcgc aggccctctt cctcggcgat ggcttcgatc
      901 cgcgcgaccg acgtcgaccg ttcggcctcg tcggggggca ggaaggcgat gcccacggca
      961 tacgcccccg ccacagggag ctcgaagtcg acggtcgccc tcaggaaggc gtccggaacc
     1021 tgcgtgagga tgccggcgcc gtcgcccacc agggggtcgg caccggtggc accgcggtgc
     1081 tccaggttgc gcagggcggt cagggcgtgg tcgacgatgt cgtgaccggc acttcctcgc
     1141 atcgtggcca cgagcgccac gccgcaggcg tcgtgctcga actcgcggcg gtacagccct
     1201 gtgtccgcgg gctgggcgga gaagcgcgcg aaagtcacgt tcgggtcacc gtccttgggg
     1261 gtcaagatgc gtcgtggacc ccagctgaat tcacatgcga ggcacaccgg tcacgcgcgt
     1321 ggacggccat ggccacggct ggaggaagaa tagccgctgg ccctctcgtc ccgctatgtg
     1381 agccgggtca ttccgaactg tgagacacct ccgagtgcac aaccggttgc tcgacggtgc
     1441 tgtcgtcgcg gtggcgcagc cgccagacga ggtagacgcc gaacaggaac accacgatgc
     1501 tcgtccacac gttcacccgc aagcccagga tgtggttggc ctcgtcactg cgcatcagct
     1561 cgaacacgac ccggcccagc gggtacccgg cgatgtagag cccgaagatc tgcccgcgcc
     1621 gcagcgacag ccgacggtcg gccaggacca gccccagccc cagcagcagg caccacagcg
     1681 actcgtacag gaacgtgggg tgaaaggtcc ccagcacgat cgggtggccg gccgcgtccc
     1741 gcacggcacg accggccgac tggtcccact catggatggt cagggcccag ggcacgttgg
     1801 tcggccgccc gtagagctcg ttgttgaacc agttgcccca gcgacccagg gcctgcgcca
     1861 cagccacccc ggggacggcc gcatcggcga agtcgaggaa cggcacgccg tggcggcgag
     1921 ccccgatcca cgcacccacg gcacccagag cgaccgcacc ccagatgccc agaccgccct
     1981 cccagatgta gaacgcgcgc agggggtgcc cgccggcccc gaaatacggc tgaggcgtgg
     2041 tgatgacgtg gtagagccga cccccgacga tcccgaaggg caccgcccag gcggagatgt
     2101 cgacggcctt ctcgcgcgag tgaccccggt cgaccaggcg tcgcccggtg atccacaccg
     2161 cgacgacgat ccccgcgagg atgcacagcg cgtacgcccg gatggggaac ggaccgagat
     2221 gccacacgcc cgtggtcggg ctggggatgg cggtcggcag ggccgtgatc acttggtgtt
     2281 ggcctggacc gtggcatcca gcgactgcgg gctcagggtg gcgagctgca cggccttgcc
     2341 gttgatcttg atggtcgggg taccggtgat gccgtccttg tccgactggg tctgcaccga
     2401 atggacgtac tggttgtgcg tcttgctgga atagcacgtc tgccaggtct gcagggcggg
     2461 cccggtgatg ccggccgtct gggcgaacgt cgtgagctgg gcgtcggtgt agccgtcacc
     2521 ctccttggcc ggctgaccgg cgaacaccgc tgcgtggtcc tcgaggaact tgccgtcgtc
     2581 ggccgcgcac gccgctgcgt tggccgctcg gttggagctg tcgttgcgca ggttgtcgtc
     2641 gaggaagctc agggtatgga tgacgagccg gacgcggttc tgcgcggcga gctgggtgac
     2701 ctgagcgccg aacagctgct cgaaccg
//
LOCUS       DASYFY010000540         2951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_880394, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000540 DASYFY010000000
VERSION     DASYFY010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880394"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..959)
                     /locus_tag="VGN19_10925"
     CDS             complement(<1..959)
                     /locus_tag="VGN19_10925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HEV7196445.1"
                     /translation="MSPKFGKKSRVARHEAQAPEPVPEATTEAVVADATTEAVVPDAT
                     TEAAVPDAVPEQQKSETPAESGGSSWFGLPDAAEEPAGESLPPVDVAATTAVSAPEAH
                     ASATEQQVDREPPVDREPEPVPVITTPQEAIRALADGRHQQPHDLLGHHLEPQGLVVR
                     AYRPFASSVAVIFQDGERIELQHESEGVWGGVRAGATQTQDYRLRVAYADGIEHQQDD
                     PYRFAPTLGPIDLHLIGEGRHEELWTVLGAHVREYPGPMGTVVGTSFAVWAPRAQAVH
                     VAGDFNGWDTRAHSMRLLGESGVWELFIPGVGDGTLYKFLVRGA"
     gene            complement(956..2395)
                     /locus_tag="VGN19_10930"
     CDS             complement(956..2395)
                     /locus_tag="VGN19_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEV7196446.1"
                     /translation="MAEIHQSATLSPTKLELLPAWMATQRWYAAKGRVPRLRKLWSWR
                     LDDPAGQVGIETLLVVDEGGVEPVVYQVPLTYRGAPLDGAQHALVGTMEHSVLGRRWV
                     YDGAHDPVYATQLLALVLQQATPQAGGSSDTPEPAVVAQRHPSWTAYPELRGAKVLSG
                     EQSNTSIIFDCIDGDGAPTPLICKVFRTLQSGANPDVVLQGALTEAGSTRVPRMVGSV
                     LAAWPGLHEGEPGSTGHLVFAQEFLPGTEDAWRVALRSVAAAEDFTAQAAALGAATAE
                     VHALLAEVLPTEPVSPEAIAATVASMRGRYVSAASEVPALAAYEHRIAAVFDQAVNAA
                     WPRLQRIHGDYHLGQVLHVPDRGWVLLDFEGEPMRPLSERTQPDLAVRDIAGMLRSFD
                     YAAGSWEQSHPGQSARAWVAATQEAFLDGYAAAWGRDPRQDAALLIAFQLDKALYEVV
                     YEARNRPTWLTIPTDAVSRLLDDARKDLP"
     gene            complement(2388..>2951)
                     /locus_tag="VGN19_10935"
     CDS             complement(2388..>2951)
                     /locus_tag="VGN19_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011690604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase C-terminal domain-containing
                     protein"
                     /protein_id="HEV7196447.1"
                     /translation="LYYGDEIGMGDNIWLNDRDSVRTPMQWTPDRNSGFSSADPGKLY
                     LPVVSSLVYHYNNVNVEAQMASSASQLHWVRAMLQIRKRHPVFGRGDFEVCPSDNEAV
                     LAYLRVERPGESSGPSAEAVLCINNLSSRPQASTVRVPDEFAGAQLEDLFGGQGFPKI
                     SDDGTITLTLGSRDFFWLRLVPGAAHG"
BASE COUNT          455 a         1020 c         1055 g          421 t
ORIGIN      
        1 gctccgcgga ccaggaactt gtagagggtg ccgtcgccga ccccggggat gaacagctcc
       61 cagacgccgg actcgccgag caggcgcatg gagtgggcgc gggtatccca accgttgaag
      121 tcgccggcca cgtgcacggc ctgggcccgc ggagcccaca cggcgaacga ggtgccgacc
      181 accgtcccca tcggaccggg gtactcgcgc acatgcgcgc cgagcaccgt ccacagctcc
      241 tcgtgtcggc cctcgccgat caggtgcagg tcgatcggcc cgagggtggg cgcaaaccgg
      301 tacgggtcgt cctgctggtg ctcgatgccg tccgcatagg cgacgcgcag ccggtagtcc
      361 tgggtctggg tggctcccgc acgaacgcca ccccagacgc cctccgactc gtgctggagc
      421 tcgatgcgct cgccgtcctg gaagatcacg gccaccgagg aagcgaacgg tcggtaggcg
      481 cgcacgacga gcccctgcgg ctcgagatgg tggcccaaca ggtcgtgagg ctgctgatga
      541 cgcccgtcag ccagcgcgcg gatcgcctcc tgcggcgtcg tgatcacggg caccggctcc
      601 ggctcgcgat ccaccggggg ctcgcgatcc acctgctgct cggtcgccga cgcgtgcgcc
      661 tcgggggcgg agaccgccgt ggtcgcggcg acgtcaacgg gcggcaggga ctcgcccgcc
      721 ggctcctcgg ccgcgtcagg cagaccgaac caggacgagc cgccactctc agcgggggtc
      781 tcggacttct gctgctcggg gaccgcgtcg ggcaccgcag cttccgtggt cgcgtcgggc
      841 accacagctt ccgtggtcgc gtcggccacc acagcttccg tggtcgcctc cgggacaggc
      901 tccggtgctt gcgcctcgtg gcgggccact ctggacttct tgccgaactt gggactcatg
      961 gcaggtcctt cctcgcgtcg tcgagcagcc gtgaaacggc gtcggtgggg atggtcagcc
     1021 acgtgggccg gttgcgggcc tcgtagacca cttcgtacag cgccttgtcg agctggaagg
     1081 cgatgagcag cgccgcgtcc tgacgcgggt cgcggcccca cgcggcggca tacccgtcga
     1141 gaaacgcctc ttgggtggcg gccacccagg cccgggcgct ctggccgggg tgggactgct
     1201 cccaggaacc cgcggcgtag tcgaacgagc ggagcatgcc cgcgatgtcg cgcacggcca
     1261 ggtctggctg ggtccgctcg gacagcggtc gcatcggctc gccctcgaag tcgagcagta
     1321 cccacccacg gtcgggcacg tggagcacct gaccgaggtg gtagtcaccg tgaatgcgct
     1381 gcagccgggg ccaggcggcg ttcacggcct ggtcgaagac ggctgcgatg cgatgttcgt
     1441 atgccgcgag cgccggaacc tcggacgctg ccgagacgta gcgaccgcgc atgctcgcca
     1501 ccgtagccgc gatcgcctcg gggctgaccg gctcggtggg cagcacctcg gcgagcaggg
     1561 cgtgcacctc agcggtggct gcgcccagcg ccgccgcctg agcggtgaag tcctcggcag
     1621 cagccaccga gcgcagtgcc acgcgccagg cgtcctcggt gccgggaagg aactcctgag
     1681 cgaacaccag atgtcccgtc gagccgggtt cgccctcgtg cagaccgggc catgccgcaa
     1741 ggaccgaccc gaccatccgg ggtacgcggg tcgagcccgc ctcggtcaga gcaccctgga
     1801 gcaccacgtc ggggttcgcg ccggactgca gggtgcgaaa caccttgcag atcaacggcg
     1861 ttggagcgcc gtcaccgtca atgcagtcga agatgatcga ggtgttcgac tgctcgccgg
     1921 acagcacctt ggcgccacgc agctcggggt atgccgtcca ggacgggtgg cgctgggcaa
     1981 ccacagccgg ctcaggcgta tcggagctcc cgccagcctg gggggtcgcc tgctgcagga
     2041 ccagagccag cagctgggtg gcgtacaccg ggtcgtgcgc cccgtcgtac acccaccggc
     2101 gccccagcac gctgtgctcc atggtgccga ccagagcatg ctgcgcgccg tcaagcggag
     2161 cgccgcggta ggtcagcggc acctggtaga ccaccggctc gacgccgccc tcgtcgacca
     2221 cgagcagcgt ctcgataccc acctgccccg cgggatcgtc gaggcgccac gaccacagct
     2281 tgcgcagacg gggaacgcga cccttggcgg cataccaccg ttgggtggcc atccacgcgg
     2341 gcagcagctc gagcttggtc ggggagaggg tggcggactg gtggatctca gccatgcgcc
     2401 gcaccaggca cgaggcgcag ccagaagaag tcccgcgatc ccagggtcag ggtgatggtg
     2461 ccgtcgtcgg agatcttggg gaacccctga ccaccgaaca ggtcctcgag ctgggccccg
     2521 gcgaactcgt cggggacccg caccgtcgag gcctgcggtc gcgaggacag gttgttgata
     2581 cacagcaccg cctcggccga ggggccggag ctctcgccgg gccgctccac ccgcaggtac
     2641 gcgagcacgg cctcattgtc agaggggcag acctcgaagt cgccgcgccc gaagaccggg
     2701 tgacgcttgc ggatctggag catcgcgcga acccagtgca gctgcgaggc gctgctggcc
     2761 atctgcgctt cgacgttgac gttgttgtag tggtagacga gcgaggagac cacgggcaga
     2821 tagagcttgc ccgggtcggc cgaggagaag ccggagttgc ggtcgggcgt ccactgcatc
     2881 ggcgtgcgca ccgagtcgcg gtcgttgagc cagatgttgt cgcccatgcc gatctcgtcg
     2941 ccgtagtaca g
//
LOCUS       DASYFY010000541         2038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_827272, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000541 DASYFY010000000
VERSION     DASYFY010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_827272"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..527
                     /locus_tag="VGN19_10940"
     CDS             <1..527
                     /locus_tag="VGN19_10940"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium-independent anion transporter"
                     /protein_id="HEV7196448.1"
                     /translation="KSAWGSIRNHAERSRYPGVIVLRLNVPLFWVTAAPANDSILALI
                     DATPGTRALVLDLEATNQMDTTSADALADLRAALLRRDVDLFLVRVMWPVRQALRRSG
                     LIPELGEDHLWHSISQGVREARRVHGLLDLPAHDGVQPAGGALADEPLDADGEEHIVA
                     RDPGPVPPNEQGSS"
     gene            781..1530
                     /locus_tag="VGN19_10945"
     CDS             781..1530
                     /locus_tag="VGN19_10945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011776746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7196449.1"
                     /translation="MRGFDELVAEAESADMTGWGFEWLTGRATEERPPWRFSQRLARR
                     LAAVERALDIDTGGGEVINEAPVLPPVMVVAESWPANAERARATLGPRGVRVLETRDG
                     SGLPLEDESFDLVTARHPVRPDWHEIHRVLRPGGHYFAQHVGPASAFELIEFLLGPLP
                     EQRKGRDPQREAAQAEEAGLRVEQLHTARCRLEFFDVGAIVWILRKCVWWVPDFTVAR
                     YEDKLHELDAQMRQGEPFVAHSARHLIVARR"
     gene            complement(1674..>2038)
                     /locus_tag="VGN19_10950"
     CDS             complement(1674..>2038)
                     /locus_tag="VGN19_10950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEV7196450.1"
                     /translation="WLQRFTPRGPRSRWSQTNRGKAEALIKAGRMRQAGQAQVDAAKA
                     DGRWAAAYAGQKRATVPDDLAAALAADPEAKAFFETLNGANRYAILYRVQDAKKPQTR
                     AARIAKFVEMCHKHETVH"
BASE COUNT          305 a          713 c          701 g          319 t
ORIGIN      
        1 agaagtcagc ctgggggagc atccgcaacc acgctgagcg ctcgaggtat cccggggtga
       61 tcgtgcttcg cctcaacgtg ccgctcttct gggtcaccgc ggcgcccgcc aacgacagca
      121 tcctcgccct gattgacgcg acgccgggca cgcgcgctct cgtcctcgac ctggaggcga
      181 ccaaccagat ggacacgacc agcgcggacg ccctcgcgga cctccgggct gccctgctac
      241 gacgggatgt cgacctcttc ctcgtccggg tcatgtggcc ggtccgccag gcactgcgcc
      301 gctcgggact gatccccgaa ctcggcgaag accacctatg gcacagcatc tcccagggtg
      361 tgcgggaggc gcgcagagtg cacggcctgc tcgaccttcc ggcccacgac ggggtgcaac
      421 ccgccggcgg agccttggcc gacgaacccc tcgatgccga cggcgaggaa cacatcgtgg
      481 cccgggaccc aggcccagtc ccgccgaacg aacaggggtc ctcgtgaacg ccgtgcgcga
      541 gagagacgag ctgcagccag gtgatagcac gggtcgtcgg gaggccagac gagtacgaca
      601 cgggtgacga tggcgagtca cagactccgt gcgtggcgct gctccgattc gtagacgggc
      661 cgcctcggtg agtgcggagt cgcgtcacac cgccgccgtg tcggacgcaa gagttgcacc
      721 cacgtgtcca ccgttggaaa gcgctttgtg ggccttcccc gagtctgtga ggctcgtgcc
      781 atgcgcgggt tcgacgagtt ggtagcggag gccgagtcgg cagacatgac cggatggggc
      841 ttcgaatggc tgaccggccg ggccaccgaa gaacgccccc catggcggtt ctcgcagcgc
      901 ctcgcgcggc ggctcgcagc cgtagagcgg gccctggaca tcgacaccgg gggcggcgag
      961 gtcatcaacg aggcacccgt gctgcctccc gtcatggtgg tggccgagtc ctggcccgcc
     1021 aacgcggaac gggcgcgcgc cacgttgggg ccgcgcgggg tgcgcgtcct cgagacccga
     1081 gacggttccg ggctccccct cgaggacgaa tcgttcgacc tggtcaccgc ccggcatccc
     1141 gtgcgccccg actggcacga gattcatcgc gtgctacgtc ccggcgggca ctatttcgcg
     1201 cagcacgtag gacctgcctc ggcgttcgag ctcatcgagt tcctcctggg accgctgcca
     1261 gagcagcgga agggacgaga ccctcagcgg gaggccgctc aggccgagga ggccggcctc
     1321 cgagtcgagc agctgcacac ggcgagatgt cgcctggagt tcttcgacgt cggggccatc
     1381 gtctggatcc tgcgcaagtg cgtgtggtgg gtacccgact tcaccgtcgc ccggtacgag
     1441 gacaagttgc acgagctgga cgcgcagatg cgtcaggggg aaccgttcgt cgcccactcc
     1501 gcccgacacc tcatcgtcgc ccgtaggtaa ggcgtcgatg cgcaagcccg ctcgggccgc
     1561 gatccctccc gccaacgcga gggtcgcgca acggttgcgt ctctccgccg tgaattgcgc
     1621 cttgccgcag gcgtttcccg acgtctgcct ggagggccgt cgtgggccag cggtcagtgg
     1681 acggtctcgt gtttgtggca catctcgacg aacttcgcga tgcgcgccgc ccgggtctgg
     1741 ggcttcttcg cgtcctgaac gcgatagagg atcgcatacc ggttggcgcc gttgagcgtc
     1801 tcgaagaacg ccttggcctc cggatcggcc gccagcgcgg cagccaggtc gtcggggacc
     1861 gtcgcgcgct tctggccggc ataggccgcg gcccaccggc cgtccgcctt cgccgcgtcg
     1921 acctgcgcct gcccggcctg gcgcatacga ccggctttga tcagcgcctc ggccttgccc
     1981 cggttggtct gcgaccacct gctccgcggc ccgcgtgggg tgaagcgctg caaccaat
//
LOCUS       DASYFY010000542         6554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1354516, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000542 DASYFY010000000
VERSION     DASYFY010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6554
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354516"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VGN19_10955"
     CDS             <1..587
                     /locus_tag="VGN19_10955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196451.1"
                     /translation="GFVVDIEADGPAGLEAARFGEYDGMLLDVMLPGLSGYTVVRTLR
                     EEQNWLPVLMLSAKDGEYDQADGLDYGADDYLTKPFSFVVLLARLRALLRRGATPRAT
                     VLEAAGLRLEPASHRVEADGEPVELSRREFLVLEHLMRAHPAVVTRESLLDGVWGSDN
                     VHGNVAEVYIGYLRRKVGRERIETVRGIGYRLRS"
     gene            584..1957
                     /locus_tag="VGN19_10960"
     CDS             584..1957
                     /locus_tag="VGN19_10960"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196452.1"
                     /translation="MTGWFGRLSIRARLMAIGVAGVAGALLIGGALLYAAAGASLHAS
                     SEREAQSSATDVAHLVDAGRLPDPVPVSGALVVQVLDARNRVVSGSATADRLTSLLTV
                     DEHRELASGQVLEIPGNRAGMSGSLLVVGVPAGPAANRVLVVAAVPTAELETNRRVLR
                     TLLLVFFPLFLVLIALIAFRVVGLALRPVDRLRQGAERIGDSADLSERLPTLASRDEI
                     SALAATLNHMLGRLSEANDKQRAFVADAAHELRSPIASLQTQLEVAQRLGEGDGLPDE
                     LLPDVARLSALVEDLLVLARSGPDAEPPQRAPVSLTQLADDLVLRYAGARVPVSRGAA
                     PVGGAREAVVLAARDDLDRALANLVDNAVRHARHEVTIAVESGARGLRLTVCDDGNGI
                     PESERERVFDRFARLDEARARDSGGSGLGLSIARELLRRNDARVRLEGANPGLRAVVE
                     FDDAVTS"
     gene            2252..3724
                     /locus_tag="VGN19_10965"
     CDS             2252..3724
                     /locus_tag="VGN19_10965"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7196453.1"
                     /translation="MKWWERWSLHRRVLTLSAAAVTLAIVMGIGAYAVALDRILYSGA
                     QVAARLQAGDISAAITTGEQPATLAVQDAPSQGRILQLIDMHHQVVATSDPAGQAVAL
                     TSLSPAPGHVATEQVASVPGEVGEPYAIAAQGVRTKRGIAYVVVVAAPLAVESNSVRT
                     ATLLLGVGGLGLLGMLVLLMGRMLDRALEPVERIRREVDRITEVRGRGQITVPGSGDE
                     ISRLARTMNQMLARLDQADSSTRRFVSDASHELRSPLATIRAAIEVSSTGHHGPDPER
                     DALIQSEVLRMQRLVDDLLTLARADDGVPLASEEVDVDDIVDAEVRRLRATGDAPVRA
                     SIEAARVVGDRARLEQVVRNLVDNAARHTSGGITLSVGTEGQWVVLQVDNVGDPIPVE
                     DREAVFERFTRLEESRQRHTGGSGLGLAIARTLVVAHGGYVVATETPAGQCRFEVRLP
                     AADATELGQPRWPAAGVARLPDRATSVAPPTPASAGSPSP"
     gene            complement(3672..4361)
                     /locus_tag="VGN19_10970"
     CDS             complement(3672..4361)
                     /locus_tag="VGN19_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196454.1"
                     /translation="MRVLLVEDERALAETIRRGLTNEGFVVDVAHDGVSGQWMATENP
                     YDVLVLDIMLPGRNGYDVLRNIREMLIWTPALMLTAKDGDYDQTDAFELGADDYLTKP
                     FSFIVLVARLRALVRRGAPVRPVSLTVGDLVLDPNTRIVTRDGQRITLTAKEFAVLQF
                     LMRHPEDVLSKAEILDNAWDHAFDGSDNIVEVYIGYLRKKIDTAFGVQSLETVRGMGY
                     RLMPVSVEPPT"
     gene            complement(4388..5140)
                     /locus_tag="VGN19_10975"
     CDS             complement(4388..5140)
                     /locus_tag="VGN19_10975"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEV7196455.1"
                     /translation="MTSATTSRSAVRGSGQLGVVRRLGWSSPVVWALVTTLVAAGGAV
                     ALADSVGERSDLAVYDPTVTAEVVAARSWPWTVLAQLLTMVGSEVVVGALTVVVLAWL
                     VLRHRRWHAAWVFGSTMALAGGLTLVVKHLMSRPRPAPAVMLGPVDTGFSFPSGHTLY
                     STVFFGLVAGLLLQRCARRSSRVLVVAAWGLMSGGVGLSRLYLGYHWLTDVLAGWTIG
                     IGVLALAALATTILWSARGPGVTSPDQRGRLG"
     gene            5400..6512
                     /locus_tag="VGN19_10980"
     CDS             5400..6512
                     /locus_tag="VGN19_10980"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7196456.1"
                     /translation="MRILHVTDTYHPTVGGIEVLVESLASRQAAAGHDVTVLTRTPRQ
                     GPTGTDAESGVTVSRDSSDLVRLTRWADCVHAHVSAFSPLALRSTEIAAAESRPVVAT
                     VHSMWGNAWPIVGAVARLRRWPSMPIQWAAVSEAAAGPVQRALGGQPVLLLPNAVDTS
                     QWASAPQESAAGEVTIVSVQRMVRRKRPLPLLAMLREARELVPEHIRIRAVLGGDGAQ
                     LAAVRRRIAKWGMESWVEAPGPLTHAQLRTLYRGADIFIAPATRESFGIAALEARTSG
                     LAVVAQAATGVSEFVRHETDGLLADNDAEMVSQLARLCRDDVLRDRIKAHNRAEKPAF
                     DWTDILWRAEYAYSTAAERVPGRQVQPLGVGSSRTP"
BASE COUNT          951 a         2322 c         2286 g          995 t
ORIGIN      
        1 agggcttcgt ggtcgacatc gaggccgacg gtcccgccgg cctggaagcg gcccggttcg
       61 gcgagtacga cggcatgctc ctggacgtga tgttgccggg cctgtccgga tacacagtgg
      121 tccgcacgct gcgcgaggag cagaactggc tgccggtcct catgctgtcg gcgaaggacg
      181 gcgagtacga ccaggccgac gggctggact acggcgctga cgactacctg accaagccgt
      241 tctcgttcgt ggtgctgctg gcgcggctac gcgcgctgct gcgccgtggg gcaacgcccc
      301 gggccacggt gctcgaggcg gccggtctgc gcctcgaacc ggcgtctcac cgggtcgagg
      361 cggacggcga acccgtcgag ctgtcccgtc gcgagttcct ggtcctcgag cacctcatga
      421 gggcacaccc tgccgtggtc acccgcgagt cgctgctcga cggcgtctgg gggtcggaca
      481 acgtgcacgg caacgtggcc gaggtctaca tcggctacct acgccgcaag gtcgggcgcg
      541 aacggatcga gacggttcgc ggcatcggct accggttgcg ttcatgaccg gctggttcgg
      601 ccggctcagc atccgggcgc gcctgatggc gatcggcgtc gccggcgtgg cgggggcgct
      661 gctgatcggt ggagccttgt tgtatgccgc ggccggcgcc tccctgcatg cgtcctcgga
      721 gcgtgaggct cagtccagcg ccacggatgt cgcccacctg gtcgacgccg gccggctgcc
      781 agaccctgtc ccggtcagcg gggctctggt cgttcaggtg ctcgatgctc gcaaccgcgt
      841 ggtgagcggg tccgcgacag ccgaccggct gacctcgctg ctcaccgtcg acgagcaccg
      901 cgagctggca tccggccagg tgctggagat cccgggcaac cgggccggga tgagcggctc
      961 gctgctggtg gtcggagtcc ccgccgggcc tgccgccaac cgggtcctgg tcgtcgcggc
     1021 ggtccccacc gcagagctgg agaccaaccg gcgggtgctg cgcacgctcc tgctcgtgtt
     1081 cttcccgttg ttcctcgttc tcatcgcgct cattgccttt cgggtggtgg gcctggcgct
     1141 gcgcccggtc gaccggctcc gccagggggc ggagcggatc ggcgactccg ccgacctcag
     1201 cgaacggttg ccgaccctcg ccagccgcga cgagatcagc gccctggccg ccaccctcaa
     1261 ccacatgctc ggccgccttt ccgaggcgaa cgacaagcaa cgcgcgttcg tcgcggacgc
     1321 agcccacgag ctccgcagtc ctatcgcgtc gctgcagacc cagctcgagg tagctcaacg
     1381 gctcggcgag ggcgacggtc tgcccgacga gctcctcccg gacgtcgcac gcttgtcggc
     1441 cttggtggag gacctgctgg tgctggcccg cagcgggccg gacgcggagc caccgcagcg
     1501 ggcgccggtg tcactgacgc agctcgccga cgacctggtc ctgaggtatg ccggcgcccg
     1561 agtcccggtg agccgcggcg cagcccccgt cgggggcgcc agggaggccg tcgtcctcgc
     1621 cgcccgcgac gacctggacc gagcgctcgc caacctcgtc gacaacgccg ttcggcatgc
     1681 ccgacacgag gtcacgatcg cggtggagtc cggggcccgc ggtctgcggc tgaccgtgtg
     1741 cgacgacggc aacggcatac cggaaagcga gcgcgagcga gtattcgacc ggttcgcacg
     1801 gctcgacgag gcgcgggctc gcgactccgg cggcagcggg cttgggctgt cgatcgctcg
     1861 ggagctgttg cgtcgcaatg acgcccgcgt tcgcctcgag ggtgccaacc cagggctgcg
     1921 agccgtggtg gagttcgacg acgcagtgac ttcctgaccc agctgactca ggctggtctc
     1981 agcaagcctg ccccacgctg agcttcatga ccgcccgcca gcgccgcacg ccttcgacga
     2041 gtctgtcatc ggtgtactga cgctggcacg agacctcgcc agcttccgcc gcgaccaact
     2101 gcctgcccgg gtagcgaggg aagccgagga cgcacgcctg agcgtgcgtg ggccgaggcg
     2161 tccgggtccc cctgcccggg cgtctcggtt ccgtctgcag gccctcgcgg gagacaatgc
     2221 ccgcaagacg gtgacgaagg gtgggcctct gatgaagtgg tgggagcgct ggtcgctgca
     2281 tcggcgggtg ctcaccctgt ccgccgcggc ggtcaccctc gcgatcgtca tggggatcgg
     2341 ggcgtatgcc gtggcgctgg accggatcct gtattccgga gcacaggtcg ccgcccggct
     2401 ccaggccggc gatatctcgg cggcgatcac gacgggcgag cagccagcga cgttggctgt
     2461 tcaggacgcg ccgagccagg gccgaatcct gcagctgatc gacatgcatc atcaggtggt
     2521 cgccacctcg gaccccgccg gacaggcggt ggcgttgacg tcgctgtccc ccgctccggg
     2581 gcatgtggcc accgagcagg tggccagcgt tcccggcgag gtcggcgagc cgtacgcgat
     2641 cgccgcccaa ggcgttcgca ccaagcgcgg catcgcctac gtcgtcgtgg tggccgcacc
     2701 gttggcggtg gagtccaaca gcgttcgcac agccaccctc ctcctcggcg tcggcggcct
     2761 cggactgttg ggcatgctcg tcctgctcat gggccggatg ttggatcgcg ccctcgagcc
     2821 ggtggagcgg atccggcgcg aggtcgaccg gatcaccgag gtccgcggtc gtggccagat
     2881 cacggtcccg ggatccggtg acgagatctc ccggctcgcc cggaccatga accagatgct
     2941 cgctcgcctc gaccaggccg acagcagcac ccgccggttc gtctctgatg cgtcccacga
     3001 gctgcgcagc ccgttggcga ccatccgagc ggcgatcgag gtgtcgtcca ccgggcacca
     3061 cgggccggac ccggagcgcg atgcgctcat ccagtccgag gtgctgcgca tgcagcgact
     3121 cgtcgacgac ctgctcacgc tggcccgagc cgacgatgga gtgccgctgg cctccgaaga
     3181 ggtcgatgtc gacgacatcg tggacgcgga ggtccggcga ctgcgggcca ctggtgatgc
     3241 cccggtgcgc gcctcgatcg aggccgcgcg ggtcgtcggc gaccgcgccc gcctcgagca
     3301 ggtggtgcgc aacctcgtgg acaacgcggc acggcatacc tctgggggca tcacgttgtc
     3361 ggtggggacc gaggggcagt gggtcgtgct ccaggtggac aacgtcggtg accccatccc
     3421 ggtcgaggac cgggaggcgg tgttcgagcg cttcacgcgg ctcgaggagt cgcgccaacg
     3481 gcataccggg ggcagcgggc tgggcctggc catcgcgcgc accctggtgg tggcgcacgg
     3541 cggctatgtc gtcgcgacgg agaccccggc cggtcagtgc cggttcgagg tgcgactacc
     3601 ggccgccgac gccaccgagc tgggccaacc ccgctggccg gcggcagggg tggcgcgcct
     3661 gcccgaccgt gctacgtcgg tggctccacc gacaccggca tcagccggta gcccatcccc
     3721 ctgaccgtct cgagggactg caccccgaaa gcggtgtcga tcttcttgcg caggtagccg
     3781 atgtagacct cgacgatgtt gtcactgccg tcgaacgcgt ggtcccaggc gttgtcgagg
     3841 atctctgcct tggacagcac gtcctccggg tggcgcatca ggaactggag caccgcgaac
     3901 tccttggccg tcaacgtgat ccgttgcccg tcacgcgtga cgatccgggt gttgggatcc
     3961 aggacgaggt cgccgacggt gagggagacg ggtcggaccg gggcgccgcg gcgcaccagc
     4021 gcgcgcagtc tcgccacgag cacgatgaag ctgaacggtt tcgtcaggta gtcgtccgcc
     4081 ccgagctcga acgcgtcggt ctggtcgtag tcaccgtcct tggccgtcag catcagggcc
     4141 ggggtccaga tgagcatctc gcggatgttc cgcaggacgt cgtagccgtt gcgcccgggc
     4201 agcatgatgt cgagcaccag cacgtcgtag gggttctcgg tagccatcca ctgcccgctg
     4261 accccatcgt gagcgacgtc gacgacgaag ccctcgttgg tcagaccacg cctgatggtc
     4321 tcggccaggg cacgctcgtc ctccaccaac agcactcgca ccggaactct ccctcgtcgc
     4381 tctgcggtca gcctaggcgt ccgcgctgat caggcgaggt caccccaggc ccacgtgccg
     4441 accacaggat cgtggtggca agggctgcca gggcaaggac cccgataccg atggtccagc
     4501 cggccagcac atcggtgagc cagtggtacc ccaggtacag gcggctcagg ccgaccccac
     4561 cactcatcag accccacgcg gccaccacca ggacccggct cgaccggcgc gcgcagcgct
     4621 gcagcagcag gccggccacg aggccgaaga acaccgtgga gtagagcgtg tgtccggacg
     4681 ggaaggagaa cccggtgtcg accggaccga gcatcacggc cggcgccggc cgggggcggg
     4741 acatgaggtg tttgaccacc agggtcagcc cgccggcgag ggccatcgtg gagccgaaca
     4801 cccaggccgc atgccagcga cggtgtcgca ggaccagcca ggccaggacg acgaccgtga
     4861 gagcgccgac gacgacctcg ctgcccacca tcgtgaggag ctgcgcgagg acggtccagg
     4921 gccagctgcg cgccgcgacg acctcggccg tgacggtggg gtcgtagacc gcgaggtcgc
     4981 ttcgctcgcc cacactgtcg gccagcgcca cagcgccacc ggccgccacc agcgtggtga
     5041 ccaacgccca gaccaccggc gaactccagc ccagccgccg gaccacaccc agctgaccgc
     5101 tgccgcgcac ggcgctgcgg ctggtcgtcg cgctggtcat gtggtttcct tcctcaaggg
     5161 ctctcgcgtc accctgcctt ctccgacctg agcccgtcct gagcgtgccg cgcacacggt
     5221 aacgttcagg ggatgctcag caatcgtcgt gcacagtcgt ctgggtcgtc cctgggcggc
     5281 gggacatcgg aggaactcac caccatgaca gtgcaaagcc catctgcggc tgtcgtgacc
     5341 ccctgggctc ctcgtggcgg cgtgtctctt ccaggcacct cgccccttcg aggcaccttg
     5401 tgagaatcct tcacgtcacc gacacctacc accccaccgt cggcggcatc gaggttctag
     5461 tcgagtccct cgccagccgc caggcagccg cggggcacga cgtcacggta ctgacccgga
     5521 cgcctcgcca aggaccgacc ggcaccgacg ccgagtcagg cgtcaccgtc agccgtgaca
     5581 gctccgacct cgtgcggctg acccgctggg cggactgtgt gcacgcgcac gtgtccgcgt
     5641 tctctccgct ggccctgcgt tccaccgaga ttgccgcggc cgagtccagg ccggtggtcg
     5701 cgacggtgca ctcgatgtgg ggcaacgcgt ggccgatcgt gggcgccgtg gcgcggctgc
     5761 gtcgctggcc ctcgatgccg atccagtggg cggccgtatc cgaagccgcc gccggtccgg
     5821 tccagcgagc cctcgggggc cagcccgtgc tgttgctccc gaacgccgtg gacacgtcgc
     5881 agtgggcgtc agccccgcag gagtccgcgg ccggtgaggt caccatcgtc agtgttcagc
     5941 gcatggtgcg tcgcaagcgt ccgttgccgc tgctcgccat gctgcgcgag gctcgcgagc
     6001 tcgttcccga gcacatccgc atccgcgctg tcctcggcgg tgacggtgcc cagctggccg
     6061 ccgtccgccg gcgcatcgcc aaatggggca tggagtcctg ggtcgaggcc ccaggtcctc
     6121 tcacccatgc ccagctccgg accctctatc gcggagccga catcttcatc gctccggcca
     6181 cccgagagtc gttcgggatc gccgcactgg aggcgagaac ctcagggctg gccgtggtcg
     6241 cgcaagccgc caccggcgtc tcggagttcg tacggcatga gaccgacggc ctgttggccg
     6301 acaatgacgc cgagatggtc agccagctcg cccgcctgtg ccgcgacgac gtcctgcgcg
     6361 accggatcaa ggcgcacaac cgagccgaga aacccgcctt cgactggacg gacattctgt
     6421 ggagggcgga gtacgcctac tccacggccg ctgagcgggt tcccggccgg caggtgcagc
     6481 ccttgggtgt cgggtcgtcc agaactccat agggttcggg acggttcggg actcccgccg
     6541 tcagccccgg gcag
//
LOCUS       DASYFY010000543         3029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1196386, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000543 DASYFY010000000
VERSION     DASYFY010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1196386"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VGN19_10985"
     CDS             <1..283
                     /locus_tag="VGN19_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7196457.1"
                     /translation="VLIEVPADTRGEGAVQALNHLGIEVDSTSEVEAEAARLRDAGLV
                     TLDERDTTCCHALQDKVWVHDPAGAPWEVYTVKDENPSIERKHEAVACC"
     gene            274..951
                     /locus_tag="VGN19_10990"
     CDS             274..951
                     /locus_tag="VGN19_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019178983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HEV7196458.1"
                     /translation="MLLTPPRRARLAAELLGTALLLAAVVGSGVMAQRLTADVGLQLL
                     VNAVATVAVLGVLISSLGPISGAHFNPAVTLAQAVRGAHRWSDVGPYIAVQLVGGIAG
                     TALANLMFGLPALHWSHHERTGVGLWLGEVIATGGLVLAIGLVREGGDRASLVIPAWI
                     LGAYFFTSSTSFANPAVTLARAFTDTFAGIAPASVPAFAVAQAVGAAGAVLLLRLFSP
                     ISESVTS"
     gene            948..1367
                     /locus_tag="VGN19_10995"
     CDS             948..1367
                     /locus_tag="VGN19_10995"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013884716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HEV7196459.1"
                     /translation="MSSPDKPSVLFVCVHNAGRSQMAAAYLARLGGGQVEVRSAGSEP
                     ADQVNPAAVAAMAELGIDIAAEVPKLLTTEAVQQSDVVVTMGCGDTCPYFPGKRYEDW
                     VLDDPAGQGVQEVRPIRDEIRARVVALLLELGIEPVG"
     gene            1392..2045
                     /locus_tag="VGN19_11000"
     CDS             1392..2045
                     /locus_tag="VGN19_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEV7196460.1"
                     /translation="MTLRWPVVLFDFDGTLADTIPLIVASYHHAIGTLGESADDREVR
                     SWIGRPLQPVLEERYPGRGEHLTDVYRAWNLAHHDDLIVTVDGMTTLLDELQAAGART
                     GVVSSKKTETVQLGLRAVGLEAWIEVLAGQGDTDLHKPHPAPLLHAATTLGVAPSSCV
                     YVGDAVVDIEAARAAGMGAVAVTWGAGEGALLRAAGPDALVGDLASLRAVLLPDQRP"
     gene            2055..>3029
                     /locus_tag="VGN19_11005"
     CDS             2055..>3029
                     /locus_tag="VGN19_11005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018158122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEV7196461.1"
                     /translation="MHGYNDQSLEALGDAILAYSADRLKLDPVPLDGPRTLPELDAAA
                     GQTITAEGLGGLAALKLFEEDLAPACISTDHPRYLSFIPCAPTEAAAMFDLVVGASSI
                     YGGSWLEGAGAVYAENQALRWIADLAGLPPQAGGVFVPGGTIGNLSALVAARHTARMT
                     AAHEGRSGAGARPFRVAATHGAHSSIQSACEVMDAELVGVEVDQDARLSGENLRQALL
                     AHGPETFFAVVATSGTTNLGIVDDLASVAEVCREFGIWFHVDGAYGGAGLAAPSVRAR
                     YAGIEHCDSFIVDPHKWLFAPFDCCALLYREPALARAAHTQRASYLDVL"
BASE COUNT          406 a         1068 c         1071 g          484 t
ORIGIN      
        1 ggtcctcatc gaggtgccgg ccgacacccg cggggagggg gcggtgcagg cgctgaacca
       61 cctcggcatc gaggtcgaca gcaccagcga ggtggaggcc gaggccgccc ggctccgtga
      121 cgcggggttg gtgaccctcg acgagcgaga caccacgtgc tgccacgcgc ttcaggacaa
      181 ggtctgggtg cacgacccgg ccggcgcgcc gtgggaggtt tacaccgtga aggacgagaa
      241 cccgagcatc gagcgcaagc acgaggcggt cgcgtgctgc tgacgccacc gcgtcgagcg
      301 aggctcgcgg ccgagctcct gggcaccgcc ctgctcctcg ccgctgtcgt cggctccggg
      361 gtcatggccc agcgcctgac cgctgacgtc ggcctgcagc tactggtgaa cgcggtcgcc
      421 acggtggccg tcctcggggt gctgatctcc tcgctcggcc cgatcagtgg tgcccacttc
      481 aaccccgccg tcacgctcgc ccaggcagta cggggcgccc accggtggtc ggacgtgggg
      541 ccttacatcg ccgtccagct cgtgggaggt atcgcgggaa cggcgctggc caacctcatg
      601 ttcgggttgc ctgccctgca ctggtcgcac cacgagcgca ccggcgtggg gctgtggctg
      661 ggcgaggtca tcgccaccgg cggactggtc ctagccatcg ggctcgtgcg tgagggcggc
      721 gaccgtgcct cgctggtcat ccctgcctgg attctggggg cctacttctt cacgtcctcg
      781 acgtcgttcg ccaaccccgc cgtcaccctc gcgcgagcct tcaccgacac ctttgccggc
      841 atcgcccctg ccagcgtgcc ggccttcgcg gtggctcagg cggtgggcgc cgccggcgcg
      901 gtcctcctgc tgcgcctctt cagccccatc tcggaaagcg tgacgtcatg agctcaccgg
      961 acaaaccgtc cgtcctcttc gtctgcgtgc acaacgctgg acgttcgcag atggccgcgg
     1021 cctacctggc gcgcctgggt ggcggccagg tcgaggtgag gtccgcgggg agcgaaccag
     1081 ccgaccaggt caacccggcc gccgtggcgg ccatggccga gctgggcatc gacatcgccg
     1141 ccgaggtgcc caagctcctg acgaccgagg cggtgcagca gtctgatgtg gtcgtgacga
     1201 tgggctgcgg ggatacctgc ccgtacttcc cgggtaagcg ctacgaggac tgggtgctcg
     1261 atgacccggc cggacagggg gtgcaggagg tgcgcccgat ccgtgacgag atccgggcca
     1321 gggtggtggc cttgctgctg gagctaggca tcgaacccgt cggctgacgc ggggcgttag
     1381 cctcgatgcc cgtgacactt cgttggcccg tggtcctgtt cgacttcgac ggcaccctcg
     1441 ccgacaccat tcccctgatc gtggcgtcct accaccacgc catcgggacg ctgggtgaga
     1501 gtgccgacga tcgcgaggtc cgctcctgga tcgggcgacc gctccagccg gtgctggagg
     1561 agcgctaccc aggccgaggc gagcacctca ccgacgtgta ccgcgcgtgg aacctggcgc
     1621 atcacgacga cctcatcgtg acggtcgacg gcatgacgac cctgctcgac gagctgcagg
     1681 ccgccggtgc gcgcaccggg gtcgtctcgt cgaagaagac cgaaaccgtg cagctcggcc
     1741 tgcgcgccgt cgggctggag gcctggatcg aggtcctcgc cggccagggg gacaccgacc
     1801 tgcacaaacc ccaccctgcc ccgctgctcc atgccgccac gaccctcggc gtcgccccgt
     1861 cctcctgcgt gtacgtgggg gatgcggtcg tggatatcga ggcggcgcgc gccgcgggca
     1921 tgggcgcggt cgccgtcacc tggggtgcag gtgagggggc cctgctgagg gcagccgggc
     1981 cggacgcgtt ggtgggtgac ctggccagcc tcagggccgt tctgctgccc gaccagcggc
     2041 catagactcg ccgcgtgcac ggctacaacg accagtccct cgaggcgctc ggcgacgcca
     2101 tcctcgccta ctcggccgac cggctgaagc tcgatcctgt cccgctggac ggccctcgga
     2161 cgttgcccga gctcgacgcg gccgctggcc agacgatcac ggccgagggt ctcggcgggt
     2221 tggcggcgct caagctcttc gaggaagatc tcgcgcccgc gtgcatctcg acggaccacc
     2281 cgcgctacct gtcgttcatc ccgtgtgccc ccaccgaggc ggcggcgatg ttcgacctcg
     2341 tcgtgggggc ctcgtccatc tacggcggtt cctggctcga gggcgccggc gcggtgtatg
     2401 ccgagaacca ggcccttcgt tggatcgccg acctcgcggg gctgccgccg caggcgggcg
     2461 gggtcttcgt tccagggggg acgatcggca acctgtccgc gctggtggcc gcacggcata
     2521 ccgcgcgaat gacagctgcg cacgaagggc ggagcggcgc tggtgcccgt ccgttccggg
     2581 ttgcggccac gcatggcgcc cactcgtcga tccagtcggc ctgcgaggtg atggatgccg
     2641 agctcgtcgg cgtcgaggtc gaccaggacg ctcgcctctc tggtgagaac ctgcggcagg
     2701 cgctgctggc ccacggtccg gagaccttct tcgcggtcgt ggcgaccagc ggcacgacga
     2761 acctagggat cgtcgacgac ctcgcgtcag tggccgaggt atgccgcgag ttcgggatct
     2821 ggttccacgt cgacggcgcc tatggcggcg cgggactggc cgctccctca gtgcgcgcgc
     2881 ggtatgccgg catcgaacac tgtgactcct tcatcgtcga cccgcacaag tggctgttcg
     2941 cgcccttcga ctgctgcgcg ctgctgtatc gagagccggc cctggcccgc gcggcccata
     3001 cccagcgggc ctcgtacctg gacgtgctg
//
LOCUS       DASYFY010000544         4589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1301672, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000544 DASYFY010000000
VERSION     DASYFY010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4589
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1301672"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..102)
                     /locus_tag="VGN19_11010"
     CDS             complement(<1..102)
                     /locus_tag="VGN19_11010"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEV7196462.1"
                     /translation="MGHVVIDVMLKPEILDPQGQAVNGALPRLGFDRF"
     gene            282..722
                     /locus_tag="VGN19_11015"
     CDS             282..722
                     /locus_tag="VGN19_11015"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HEV7196463.1"
                     /translation="MNPVMKTLMRGGARLSVSLYKVSGGRIGGRVRGLPIILLTVPGR
                     KTGQPHTTCVSCFEHAGGYVVVGSAGGLPQEPQWFKNLRKAPAAEVQLARQHFRVGVR
                     ELLGTERDEVWREVVVARAAFFAGYSTKGRRTIPLALLTPLGQS"
     gene            complement(719..1618)
                     /locus_tag="VGN19_11020"
     CDS             complement(719..1618)
                     /locus_tag="VGN19_11020"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEV7196464.1"
                     /translation="MPSNQPPELPGYAHIYSGKVRDLYAPLDSEGRAREDQLLLVASD
                     RMSAYDFVLDTPIPDKGAVLTQLSLWWFEQLADLVPNHIVSTQVPTEVAGRAVLVRRL
                     EMLPVECVARAYLTGGGLAEYRADGHVSGVRLPTGLVDGSRLPEAVFTPSTKAPMGEH
                     DQPMPYAEVERVVGPSLAARVRDLTTAILARGNDIAAGGGILIADTKVEFGLSGDDVV
                     LADEVLTPDSSRFWPADLWEPGHPQQSYDKQYVRDWLTSAASGWDRASGQAPPPLPED
                     VVAQTRSKYVEAFERLTGRTFVA"
     gene            1731..3170
                     /locus_tag="VGN19_11025"
     CDS             1731..3170
                     /locus_tag="VGN19_11025"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196465.1"
                     /translation="MPRATTSRPSALDQPRTLLHRAYLPFAVGAVALVTLGAFENRAV
                     MTVLPTAARQLDGMWLFGAASGAPLISFVVATTLAGLWSDRHGPVRVLAAGMAVFLVG
                     ELTMGLAPTMPLFVVGRSLGGLAEGLLDVGLTVLVARALPPDLRPRIFAAFAAAWVLP
                     SLLGPSVAGIVAEHVHWRAVFLLGVALLLPVVALLRPAMRASAARAAGSAGAAGSAGA
                     SGSAPAERRSAGSAGWAFVAATALAALSAGGSLVTRQGPPRALGAALLVGGVASMAPA
                     VRALLPAGTLRAAPGIPALTALRGLLGAAFGTAGGLLPLMLTEVHGYGPAEAGVSLTI
                     TGLFWAAGSQLQTRKVVQERVSVGRRLQIGFALMAGGLIGPTLLSLSLVPSWFGLGLW
                     ALSAIGIGICSPIISTQVLALSPDADQGRNSAASVLAPSLSQAVAFAATGAAIAWQAP
                     HPTASLFAAIMGGSGLAAGLGALLAKRAG"
     gene            complement(3167..4450)
                     /gene="purD"
                     /locus_tag="VGN19_11030"
     CDS             complement(3167..4450)
                     /gene="purD"
                     /locus_tag="VGN19_11030"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEV7196466.1"
                     /translation="MKILVVGSGAREHALVTSLMADPQVDAVIVAPGNPGIDAVALCE
                     PLPGGLADSVGVVALAQRHAVDLVVVGPEAPLVAGLADAVRAAGIPVFGPSADAARLE
                     GSKAFAKEVMAAADVPTAMAHVCSSLEQVEEALDGLGAPYVVKDDGLAAGKGVVVTTD
                     RADALDHARSCLAKEGGAVVVEEFLDGPEISLFCLCDGRTVVPLAPAQDFKRVGDGDV
                     GPNTGGMGAYSPLDWAPPSLVDELVTRVAQPTLDEMRRRGTPFVGLLFIGLAMTARGL
                     RVIEFNARFGDPETQVVLARLKTPLGSLLFAAATGGLDSVAALRWSSQHAVTVVIAAQ
                     DYPDTPRTGDVLTGLEDVADVPTAYVLHAGTARDADGLLVSAGGRVVSVVALGDSLTQ
                     ARARAYEAVDRIGLDGSHYRTDIALAAERNELHVG"
BASE COUNT          630 a         1652 c         1624 g          683 t
ORIGIN      
        1 gaaccggtcg aaccccaacc ggggaagggc gccgttcacc gcctgcccct gagggtcgag
       61 gatctctggc ttcaacatga cgtcaatgac gacgtggccc attcgggtgt ctcctgagtt
      121 ggtacctgcg ctcgcgcggg aaggaagcgt ccgaagtcta tccgtgcgtg ggccctggcc
      181 tcgtcctggt ctgcggggct acgccgcgca gactggcggt tgacactcgc cggggccaca
      241 gaggagcgtg ccagctggag gccgatggtg aggagagccg catgaacccg gtgatgaaga
      301 ccctcatgag gggcggagca aggctgtcgg tgtccctgta caaggtgtcc ggaggtcgga
      361 tcggtggccg cgtcagaggg ctgccgatca ttctcctcac cgtcccgggc cgcaagaccg
      421 gtcagccaca cacgacctgc gtgagctgct tcgagcatgc tggcggctac gtcgtcgtcg
      481 gcagcgcagg ggggctgccg caggaaccgc aatggttcaa gaacctacgc aaggcccccg
      541 cagccgaggt gcagctggca cgccagcatt tccgggtcgg cgtccgcgag ctgctcggaa
      601 ccgaacgtga cgaggtctgg cgtgaggtgg tggtggcccg cgctgcgttc ttcgccggct
      661 acagcaccaa gggccggcgc acgatccccc tcgcgctact cactccgctg ggtcagagct
      721 aggcgacgaa cgtgcgcccg gtgaggcgct cgaaggcctc gacgtacttc gatcgcgtct
      781 gcgccacgac gtcctcaggc agcggcggcg gagcctgccc ggaggcgcgg tcccagccac
      841 tggccgccga cgtgagccag tcccggacgt actgcttgtc gtaggactgc tgcgggtggc
      901 ccggctccca gaggtccgcg ggccagaatc gcgacgagtc gggcgtgagc acctcgtccg
      961 ccaggacgac gtcgtcgccc gacaggccga actcgacctt ggtgtccgcg atcaggatgc
     1021 cgccaccggc ggcaatgtcg ttgccacgag cgaggatcgc cgtcgtgagg tcacgaaccc
     1081 gagcggcgag ggacggaccc acgacccgtt ccacctcggc atacggcatc ggttggtcgt
     1141 gctcgcccat cggcgccttg gtcgaggggg tgaacaccgc ctcgggcagt cgcgagccgt
     1201 ccacgagccc agtcggcagg cgcaccccgc tgacgtgacc gtccgcgcgg tactcggcga
     1261 gaccgccgcc ggtgaggtag gcgcgggcca cgcactcgac gggcagcatc tccagacggc
     1321 ggaccagcac ggctcggccg gcgacctcgg tcgggacctg cgtcgacacg atgtggttgg
     1381 gcaccaggtc cgccagctgc tcgaaccacc acagcgagag ctgcgtcagc accgcgccct
     1441 tgtccgggat cggggtgtcg agcacgaagt cgtaggccga catccggtca ctggccacca
     1501 gcagcaactg gtcctcgcgt gcccggccct cggagtcgag gggcgcgtac aggtcgcgca
     1561 ccttgccgga gtagatgtgg gcgtagccgg gtagctctgg cggttggttc gacggcatgg
     1621 cgtcatcctt ccagccgggg cggctgggcg cggtgccggc tcggagcggt gccggctcgg
     1681 cgacgtggtg gcttgacctg aagtccactt caactcccag actgcccacc atgccccgcg
     1741 ccaccacgtc ccgacccagc gcgctcgacc aaccgcgcac tctgctgcac cgcgcctact
     1801 tgcctttcgc cgtgggtgcc gtcgccctgg tgaccctcgg cgccttcgag aaccgtgcgg
     1861 tgatgacggt gctgccgact gcggcgcgcc agctcgacgg catgtggctg ttcggtgcgg
     1921 ccagcggcgc gcccctcatc tcgttcgtcg tcgcgacgac cctggcgggg ttgtggagcg
     1981 accgccacgg gccggttcgg gtgctcgccg cgggcatggc cgtcttcctc gtcggcgagc
     2041 tcaccatggg gttggccccg acgatgccgc tgttcgtcgt cggcaggtcc ctcggcggcc
     2101 tcgccgaggg actgctcgac gtcggactga ccgtgctcgt cgcccgagca ctaccgccgg
     2161 acctccggcc cagaatcttc gccgcgttcg cggccgcctg ggtcctgccg tcgctactgg
     2221 ggccctccgt ggccgggatc gtggcagagc acgtgcactg gcgggcagtg ttcctgctcg
     2281 gagtcgccct gttgctgccc gtggtcgcgc tgctccggcc agccatgagg gcgagtgccg
     2341 cacgtgccgc cgggtccgca ggtgccgccg ggtccgcagg tgcctccggg tccgcaccgg
     2401 ccgagcggcg cagcgccggc tccgccggct gggccttcgt cgccgccacg gctctcgccg
     2461 cgctgagcgc aggcggatcg ctggtcaccc gccaggggcc gccgcgggcg ctcggggcgg
     2521 ccctcctcgt cggcggcgtg gcgtcgatgg cgcccgcggt gcgcgccctg ctgccggccg
     2581 ggacgctgcg ggccgcgccc ggcataccgg ccctcacggc ccttcggggc ctgttggggg
     2641 ctgccttcgg tacggcgggc ggcctcctac cgctcatgct caccgaggtg catggctacg
     2701 gccccgccga ggctggggtg agcctcacca tcaccggact gttctgggca gcggggtctc
     2761 agctgcagac tcgcaaggtg gtgcaggagc gggtgagcgt ggggcgtcgg ctgcagatcg
     2821 gcttcgcgct catggctggc gggctgatcg gtcccactct gctgtccctg tcgctcgtac
     2881 cgtcgtggtt cggtcttggc ctgtgggcac tctcggccat aggcatcggg atctgctcgc
     2941 cgatcatctc gacccaggtg ctcgcgctgt cgccggacgc ggaccagggg cgcaactccg
     3001 ccgcctcggt cctcgcgccg tcgctctcgc aggcggtggc cttcgccgcc accggggcag
     3061 cgatcgcctg gcaggcgccg caccccaccg ccagcctgtt cgccgcgatc atgggcggct
     3121 ccgggctcgc cgccggcctg ggtgcgctcc tcgcaaagcg ggcgggctag ccgacgtgca
     3181 gctcgttccg ctccgccgcc agagcaatgt cggtccgata gtgcgagcca tccaggccga
     3241 tccggtcgac tgcctcgtac gccctcgccc gcgcctgggt gaggctgtcg ccgagcgcga
     3301 cgacggaaac cacccgaccc ccggcggaca cgagcagacc atcggcgtcg cgggccgtgc
     3361 cggcatgcag cacgtatgcc gtgggcacgt cagccacgtc ctcgagcccg gtcagtacgt
     3421 cacccgtccg gggtgtgtcg gggtagtcct gcgccgcgat gaccaccgtc accgcgtgct
     3481 ggctcgacca gcgcaaggcg gccaccgagt cgagccctcc ggtcgcggcg gcaaacagca
     3541 aggagcccag cggggtcttc agccgggcca gcacgacctg ggtctcgggg tccccgaacc
     3601 gggcgttgaa ctcgatcacc cgcagaccac gagccgtcat ggcaagcccg atgaacagca
     3661 gcccgacgaa aggcgtgccc cggcggcgca tctcgtccag cgtcggctga gccacccggg
     3721 tcacgagctc gtcgaccagg gagggcggtg cccagtccag cggcgagtag gcccccatgc
     3781 cgccggtgtt cggtcctaca tccccgtcgc cgacgcgctt gaagtcctgt gctggcgcga
     3841 gcgggaccac cgtgcggcca tcgcacagac agaacaacga gatctccgga ccgtcgagga
     3901 actcctcgac cacgacggca cctccctctt tggccaggca ggacctcgca tggtcgagag
     3961 cgtcggctcg gtccgtggtc accacgaccc ccttgcccgc cgccaggccg tcgtccttga
     4021 cgacatacgg ggcgccgagg ccgtcgagcg cctcctccac ctgctccagc gagctgcaga
     4081 cgtgagccat cgcggtgggc acatccgccg ccgccatgac ttccttggcg aaagccttgc
     4141 tcccctcgag acgggcagcg tcggccgagg gtccgaagac cgggatccca gcggcccgca
     4201 cggcgtctgc cagacccgcg accagcgggg cctctggccc gacgacgacc aggtcgaccg
     4261 catgacgctg ggcgagcgcc acgacgccca ccgagtcggc caggcccccg gggagcggct
     4321 cgcagagggc cacggcgtcg atgccggggt tgcccggagc gacgatcacc gcgtcgacct
     4381 gggggtctgc catcagcgac gtgaccagag catgctcgcg ggcgcctgac ccgacaacga
     4441 ggatcttcac cccgtcagcg tattgaacgc agccggacat gagtgcgcgg cgtcccgggg
     4501 aggcaggggg gacatctccc ggggacgccg cgcagccgac gtgcggtcgc ctggcggggg
     4561 aacctgcaac ctggcacgtg ggtcgactg
//
LOCUS       DASYFY010000545         3149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_407629, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000545 DASYFY010000000
VERSION     DASYFY010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407629"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2767)
                     /gene="leuS"
                     /locus_tag="VGN19_11035"
     CDS             complement(<1..2767)
                     /gene="leuS"
                     /locus_tag="VGN19_11035"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEV7196467.1"
                     /translation="MTETPHRYTAELAQQIELAWQDRWQQEGTFHAPNPAGPWAEPDK
                     VAGREKLLVLDMFPYPSGAGLHVGHPMGYIATDVFARYHRMTGKNVLHCLGYDAFGLP
                     AEQYAVQTGQHPRKTTEENMVVMKRQLRRLGLGHDDRRTIATIDPDYYRWTQWIFLQI
                     YNAWYDPEAVRPDGGRGKARPIDELIEQFDSGVRPLPAEDGRDWSDLSASERHDLLDS
                     YRLAYTSEAPVNWAPGLGTVLSNEEVTNDGRSERGNYPVFKKSLRQWMMRITSYADRL
                     ADDLDRVDWPEKVKLMQRNWIGRSQGARVTFPLVGHGAGLEVFTTRPDTLFGATFMVV
                     APEHPVLDSLVPEGEWAGGTNPAWTGGEAGPAGAVAAYRRAASRKSEVERQSEGKDKT
                     GVFTGLWATNPVTGQDIPVFAADYVLMGYGTGAIMAVPGQDERDWDFAKRFDLPIVRT
                     VQPSEGHSDDEAFTGDGPAINSSNDEISLDGLGVVEAKAKIIDWLSGKGLGEGTVNYK
                     LRDWLFSRQRYWGEPFPIVFDEDGTSHAVPESMLPVELPDVPDYSPKTFEPEDDSSSP
                     EPPLGRAAEWVNVELDLGDGRGVRTYRRETNTMPNWAGSCWYYLRYLDPANDQAFVDP
                     ENEQYWMGPQASPVGGAPAGARDPGGVDLYIGGVEHAVLHLLYARFWHKVLHDLGHLS
                     SEEPFRKYFSQGYIQAPAFRDGRGQPVEASEVVEEPGHGAGETTFTWQGQPVTREFGK
                     IGKSLKNVVSPDEMFEAYGADTLRVYEMSMGPLELSKPWETRAVVGAQRFLQRLWRNV
                     IDEETGATRVGDEPMDPDTARVLHKTIDAVSRDFASLGFNTAIARLIELNNALTKLDV
                     VPREAVERLLVMTAPLAPHIAEELWSRLGHAESITFAQFPVADPALLVEDTVVCVVQI
                     KGKVRDRL"
BASE COUNT          456 a         1064 c         1067 g          562 t
ORIGIN      
        1 cgaggcggtc gcgcaccttc cccttgatct ggacgacgca cacgacggtg tcctcgacca
       61 gcagggccgg gtcggcgacc gggaactggg cgaaggtgat cgactcagcg tgacccaacc
      121 gggaccagag ctcctcggcg atgtgcggag ccaacggcgc cgtcatcacc agcaacctct
      181 cgacggcctc tcgaggcacc acgtccagct tcgtgagggc gttgttgagc tcgatcaacc
      241 gggcgattgc cgtgttgaaa cccagcgagg cgaagtcccg cgataccgcg tcgatggtct
      301 tgtgcaggac ccgcgcggtg tcggggtcca tgggttcgtc cccgacgcgg gttgcgccgg
      361 tctcctcatc gatcacgttg cgccacaggc gttgcaggaa gcgctgggca ccgacgaccg
      421 cccgggtctc ccagggcttg ctgagctcga gcgggcccat cgacatctcg tagacccgca
      481 gggtgtccgc gccgtaggcc tcgaacatct cgtccggact gacgacgttc ttgagcgact
      541 tgccgatctt gccgaactcg cgggtcacgg gctgtccctg ccaggtgaag gtggtctcgc
      601 cagcgccgtg tcccggctcc tcgacgacct cggatgcctc taccggctgg ccccgcccgt
      661 cgcggaaggc gggcgcctgg atgtagccct gggagaagta cttccggaac ggttcctcgc
      721 tgctcaggtg gcccaggtcg tggaggacct tgtgccagaa ccgcgcgtag agcaggtgca
      781 ggacggcgtg ctcgacgccg ccgatgtaca ggtcgacgcc gccagggtcc cgggcgcccg
      841 cgggggcacc gccgaccggg ctcgcctgag ggcccatcca gtactgctcg ttctcggggt
      901 cgacgaaggc ctggtcgttc gcggggtcga ggtatcgcaa gtagtaccaa cacgatccag
      961 cccagttggg catggtgttg gtctcgcgac gataggtgcg gactccgcgc ccgtccccca
     1021 ggtccagctc gacgttcacc cactccgcgg cgcgtcccaa cggcggctcg gggctgctgc
     1081 tgtcgtcttc gggctcgaac gtcttaggcg agtagtcggg aacgtccggc agctcgaccg
     1141 gcagcatcga ctcgggcacg gcgtggctgg tgccgtcctc gtcgaagacg atggggaacg
     1201 gctcacccca gtaccgctga cggctgaaca accagtcgcg cagcttgtag ttgacggtgc
     1261 cctcgcccag tcccttgccc gacagccagt cgatgatctt cgccttggct tcgaccacgc
     1321 ccaacccgtc gagggagatc tcgtcgttgg aggagttgat cgcggggccg tcgccggtga
     1381 acgcctcgtc gtcggaatgt ccttcactcg gttgcacggt ccgcacgatg ggcaggtcga
     1441 aacgcttcgc gaagtcccag tcgcgttcgt cttgtcccgg cacggccatg atggcccctg
     1501 tgccgtagcc catcaggacg tagtccgcgg cgaacaccgg aatgtcctga cccgtcacgg
     1561 gattcgtggc ccacagcccc gtgaagaccc ccgtcttgtc cttgccttcg ctttgtcgct
     1621 cgacctcgct cttgcgtgac gccgcgcgcc ggtatgccgc gaccgctccg gccggtccgg
     1681 cctcgcctcc cgtccaggcg gggttcgtcc cgccggccca ttcgccctcc ggaacaaggg
     1741 agtcgagcac cggatgctcc ggcgctacca ccatgaacgt cgcaccgaac agggtgtcgg
     1801 ggcgagtcgt gaagacctcc aggccggccc cgtggccgac cagtgggaag gtgactcggg
     1861 caccctggct gcgcccgatc cagttgcgct gcatgagctt gaccttctcg ggccagtcca
     1921 cgcggtcaag gtcgtcggcc agccggtcgg catacgaggt gatgcgcatc atccactggc
     1981 gcaggctctt cttgaagacg gggtagttgc cccgctcgga gcgcccgtcg ttggtgacct
     2041 cttcgttcga cagcacggtg cccagccctg gcgcccagtt gaccggcgct tcggaggtgt
     2101 acgccaggcg gtagctgtcg aggaggtcgt gccgctcgct cgcggacagg tccgaccagt
     2161 cccggccgtc ctcggcgggc aacggacgga caccgctgtc gaactgctcg atgagctcgt
     2221 cgatggggcg cgccttgcct cgaccaccgt cgggacgtac cgcctccggg tcgtaccagg
     2281 cgttgtagat ctgcaggaag atccactgcg tccaccggta gtagtccggg tcgatggtgg
     2341 cgatggtccg gcggtcgtcg tgccctagac ccagccggcg gagctggcgc ttcatcacga
     2401 ccatgttctc ttcggtggtc ttgcgcgggt gctgaccggt ctgcacggca tactgctcgg
     2461 ccggcaggcc aaaggcgtcg taccccaggc agtgcaacac gttcttgccg gtcatccggt
     2521 ggtatcgggc gaagacgtcg gtcgcgatgt agcccatcgg atggccgacg tgcagcccag
     2581 cgccgctggg gtacgggaac atgtcgagga ccagcagctt ctcgcgccca gccaccttgt
     2641 ccggctccgc ccagggaccg gccgggttgg gggcgtggaa ggtgccctcc tgctgccagc
     2701 gatcctgcca ggcgagctcg atctgttgtg ccagctcggc ggtgtaacgg tgcggcgtct
     2761 cggtcatgtc atcctcggtt cgggtctcgg cgacgaagtc tgctcacaga aaagcccctc
     2821 tcggtggagg ggctggccgc ggtggcctcg gggtgtcccg tgggccaacg cggctatcga
     2881 agaagcaact gacgtgccat gaccttaggt tagcgcagcg gcggcaggcc cctgcgtcaa
     2941 agggacgatc cgcacacgag gctagcggcg tacgttcggt gcatgcaggg accgtcgccg
     3001 gtcgtcgtca gcctcgagcg cgtgggtccg ctcgcgggcg acgcgggcgg cctgttgttc
     3061 ttcgcgtact ggtcgacccg ctcgcgggcc atcgcgctgc cgcccatggt ctcgatactg
     3121 ctcgacctgg ccacgctcgt gctgatgac
//
LOCUS       DASYFY010000546         6328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_933007, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000546 DASYFY010000000
VERSION     DASYFY010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6328
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_933007"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VGN19_11040"
     CDS             <1..602
                     /locus_tag="VGN19_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3097 family protein"
                     /protein_id="HEV7196468.1"
                     /translation="VARAAASRTASGSRAVAGSRARVASGSRIFVEGRHDAELVERVW
                     GDDLRIEGVVVEMLDGVDDLAGAIAEFAPGPGRRMGVLVDHLVPGTKEHRIVQDASGG
                     PYAAHVRVLGHPYVDVWQSVRPERLGLTAWPVIPRGTSWKDGICDHLGWPHGTQTDIA
                     HAWKRILGTVRTYADLEPTLLASVEELIDFVTEPGQGRP"
     gene            703..1116
                     /locus_tag="VGN19_11045"
     CDS             703..1116
                     /locus_tag="VGN19_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018190907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEV7196469.1"
                     /translation="MTDQPVPNEPPPSGPGYGTTPSPNPLSPADERLWSTLVHLSPFV
                     AAFVGLPFLGPLVIYLVLRDRGPFIRFHAAQALNFQLVLLIAYIVSGLLVVVLIGIFM
                     LIATAVLSVVFQIIAAVKANSGEWYRYPLTPDWVK"
     gene            complement(1130..2353)
                     /gene="hemW"
                     /locus_tag="VGN19_11050"
     CDS             complement(1130..2353)
                     /gene="hemW"
                     /locus_tag="VGN19_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HEV7196470.1"
                     /translation="MPSALPDGDPAPPDGRLPAASLDALSDRPFGVYLHVPFCSVRCG
                     YCDFNTYTLTELGADGASLTTFADAALRELDLAAAVLGPTPAVGTVFVGGGTPTMLAA
                     ADLARMLRGIRERFGLAPDAEVTTEANPDSVTPAGLETLAEAGFTRVSLGMQSAVPHV
                     LRTLERTHDPANVERAVAAARAAGLQVSLDLIYGTPGESVADWQTSLRAATDLGPDHI
                     SAYALVVEDGTKLAAQVRRGQVAAPEDDDEATKYEIADTELAEAGYGWYEVSNWALRD
                     DARCRHNEGYWGDGNWWGIGPGGHSHVGGVRWWNVKHPNAYAARVTQGVSPAQARETL
                     TAEQVYDERVLLAIRMVDGLPIQDLEPAGRTAVAGLIADGLAEGAAALRRQRVVLTRQ
                     GRLLTDTVVRRLLGV"
     gene            2440..3231
                     /locus_tag="VGN19_11055"
     CDS             2440..3231
                     /locus_tag="VGN19_11055"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEV7196471.1"
                     /translation="MTAPRWIELDGVANMRDVGGLPTTDGGQVADGRLLRSDNLQDLS
                     AADVAHLVHDLGVSDIVDLRSNVEVHLEGAGPLRSRDLVPHHHLSLMSDDHVEDAAAA
                     ALVVPWSKESGRPTPPRRDDDFWASHYLGYLADRPDSVSAALQVVATSTGATIVHCAA
                     GKDRTGTVVAMALSVAGVADDQIVADYVASAERIERIVARLLERPTYAEAMRDQPMSH
                     HIPRAETMERLLAVLAESHGGAAGWLREQGWSDQQVDALRSRLRA"
     gene            3291..3779
                     /locus_tag="VGN19_11060"
     CDS             3291..3779
                     /locus_tag="VGN19_11060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEV7196472.1"
                     /translation="MRVLLVDDLDRILLFRDCDLGLDPVPHWWITPGGGVDPGESDRD
                     AAVREVAEETGLVIGESDLRGPLATRTVVHGYSDVVTTQAEAFWLVRCAAFEVSTDGH
                     TELERLTMTEHRWWSRAELEATTQEVWPRDLLTLWSAAEDHTADLTPRDLGIVEESTV
                     PG"
     gene            complement(3819..4289)
                     /locus_tag="VGN19_11065"
     CDS             complement(3819..4289)
                     /locus_tag="VGN19_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold domain-containing protein"
                     /protein_id="HEV7196473.1"
                     /translation="MINTYALYQRLAAYPQGNRLFSLVFEQAAPYFRTARPRFVTLVP
                     NRAELTLKKRRRVQNHIGTVHVIAICNGLEAAMGALAEASIPASRRWIPRGMEVEYTA
                     KATSDIRCVAETDPADWERAGEVEIPVRVTATRDDGKPVVQGTIRLWVTDKPTR"
     gene            complement(4336..6189)
                     /gene="lepA"
                     /locus_tag="VGN19_11070"
     CDS             complement(4336..6189)
                     /gene="lepA"
                     /locus_tag="VGN19_11070"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HEV7196474.1"
                     /translation="MAASFVPVDSTKIRNLSIIAHIDHGKSTLADRMLQVTGIVDERA
                     MRAQYLDRMDIERERGITIKSQAVRMPWEVVNSAGVSVVYCLNMIDTPGHVDFTYEVS
                     RSLAACEGAVLLVDAAQGIEAQTLANLYLAMENELTIIPVLNKIDLPAAQPEKFAEEL
                     AGLIGCEPEDCLRVSGKTGVGVVPLLDQIVTQLPPPVGDADAPARAMIFDSVYDTYRG
                     VVTYVRVIDGNLNPREKIAMMSTRATHELLEIGVSSPEPTPAKGLGVGEVGYLITGVK
                     DVRQSRVGDTVTNAAKPATKALGGYRDPKPMVFSGLYPIDGSDYPDLRDALDKLKLND
                     AALVYEPETSAALGFGFRIGFLGMLHLEIVRERLEREFNLDLISTLPNVVYDVTLDDG
                     KQLVVTNPSEFPYGKITSVTEPVVRATVLAPSEFIGAVMELCQQKRGTLRGMDYLSEE
                     RVEMRYTLPLAEIVFDFFDQLKSRTRGYASLDYEPDGDQVADLVKVDILLQGETVDAF
                     SSIVHKDKAYAYGVMMAGKLKDLIPRQQFEVPIQAAIGSRVIARENIRAIRKDVLAKC
                     YGGDISRKRKLLEKQKEGKKRMKMVGRVEVPQEAFIAALSSDTSQAEKAKK"
BASE COUNT          950 a         2192 c         2188 g          998 t
ORIGIN      
        1 cggtcgcccg ggcggccgcc tcgcgcaccg cgtcaggctc cagagcggtc gcgggcagcc
       61 gcgcacgcgt cgcgagcggg tcacggatct tcgtcgaggg acgccacgac gccgagctcg
      121 tcgaacgcgt ctggggcgat gacctgcgca tcgagggggt cgtcgtcgag atgctcgacg
      181 gcgtggacga cctggccggc gccatcgccg agttcgcgcc gggaccgggg cgccggatgg
      241 gagtgctcgt cgaccacctc gtcccgggga cgaaggagca ccggatcgtc caggatgcct
      301 ccggcgggcc gtatgccgct cacgtgcgcg tgctgggcca cccgtacgtc gacgtgtggc
      361 agtcggtgcg tcccgaacgg ctgggactca ccgcctggcc ggtcatcccc cggggcacct
      421 cgtggaagga cggcatctgc gaccacctcg gctggccgca cggcacccag acggacatcg
      481 cccacgcctg gaagcggatc ctcgggacgg tgcgcacgta cgcggacctc gagccaaccc
      541 tgctcgccag tgtcgaggag ctcatcgact tcgtcaccga gccgggtcag ggtcggccct
      601 gacccgaccc tgaatccacc cccgggcctc acccgaaagg gggtcgcacc ggcaccgatg
      661 tgcgctctac tggtgacaac gcactcgagt ccggaggacg ccatgaccga ccagcccgtc
      721 cccaacgagc cgcccccgag cggccctggc tacggcacca ccccgtcgcc caaccccctg
      781 tcgccggccg acgagcgcct gtggtcgacg ctggtgcacc tctcgccgtt cgtcgcggct
      841 tttgtggggc tgccgttcct cggccccctg gtgatctacc tcgtgctccg cgaccgtggc
      901 ccgttcatcc ggttccatgc ggcgcaggcc ctgaacttcc agctcgtcct actcatcgcc
      961 tacatcgtgt ctgggttgct ggtagtcgta ctcatcggca tcttcatgct catcgccacg
     1021 gcggtcctgt cagtggtctt ccagatcatc gccgcggtca aggcgaacag cggcgagtgg
     1081 taccgctacc cgctgacgcc cgactgggtg aagtgagccg gcgccagtct cagacgccca
     1141 gcagccgccg cacgacggtg tcggtgagca gccggccctg cctcgtcagc acgacgcgct
     1201 gacggcgtaa ggcggctgcg ccctcggcca ggccgtcggc gatcagcccc gcaaccgcgg
     1261 tgcggccagc cggctccagg tcctggatcg ggaggccgtc caccatccgg atcgcgagca
     1321 ggacgcgctc gtcgtagacc tgctctgctg tcaaggtctc gcgggcctga gcggggctga
     1381 ccccctgggt gacgcgggcg gcatacgcgt tggggtgctt gacgttccac caccgcaccc
     1441 cgccgacgtg gctgtgcccg ccaggaccga tcccccacca gttgccgtcg ccccagtagc
     1501 cctcgttgtg ccggcaccgg gcgtcgtccc gcagcgccca gttgctcacc tcgtaccagc
     1561 cataaccggc ctcggccagc tccgtgtcgg cgatctcgta cttggtcgcc tcgtcgtcgt
     1621 cctccggtgc cgccacctga ccgcgccgca cctgcgccgc gagcttggtg ccgtcctcga
     1681 cgaccagggc gtaggccgag atgtggtcgg gccccaggtc cgtcgcggcg cgcaggctgg
     1741 tctgccagtc cgccacgctc tcccccgggg tgccatagat gaggtcgagg ctgacctgga
     1801 ggccagcggc gcgggccgcg gcgacggcgc gctcgacatt ggcagggtcg tgggtgcgct
     1861 cgagggtgcg cagcacgtgc ggcacagccg actgcatccc cagcgagacg cgggtgaacc
     1921 ccgcctcggc gagggtctcc agtcctgcgg gggtcaccga gtcggggttg gcttcggtgg
     1981 tgacctccgc gtcaggcgcc agcccgaacc gctcgcgtat gccgcgaagc atccgggcga
     2041 ggtccgcggc ggccagcatg gtgggcgtgc cgccgccgac gaacacggtt cccaccgcgg
     2101 gtgtcgggcc cagcacggcg gcagcgaggt cgagctcccg caatgcagca tccgcgaagg
     2161 tcgtcaggct cgcgccgtcg gccccgagct cggtcagcgt gtaggtgttg aagtcgcagt
     2221 agccgcaccg gaccgagcag aacggcacgt ggaggtaaac cccgaacggg cggtcggaga
     2281 gggcatcgag cgacgcagcg gggagccggc cgtccggcgg cgctgggtcg ccgtcgggca
     2341 gggcactggg catggcgcca ttctctcagg gcaggtgggc cgtgacccgt ggcggggccg
     2401 tcccggcccg ttcccgcgcc acgcggctat ggtcggacag tgactgctcc ccgctggatc
     2461 gagctcgacg gtgtcgccaa catgcgagat gtcggaggcc tgccgaccac ggatggtggc
     2521 caggtcgccg acggacggtt gttgcggtcg gacaacctgc aggacctgtc tgcggctgac
     2581 gtcgcgcacc tggtccacga tctgggggtc agcgacatcg tcgacctgcg cagcaatgtc
     2641 gaggtccacc tcgagggggc tgggccgctg cggtcccgtg acctcgtgcc gcaccaccac
     2701 ctgtccttga tgagtgacga ccacgtcgag gacgcggccg cggcagccct cgtggtgccg
     2761 tggtcgaagg agagcggacg gcccacgccg ccgcggcgcg acgacgactt ctgggccagc
     2821 cactacctgg gctatctcgc agaccggccc gactcggtca gcgcggcgct tcaggtggtg
     2881 gcgacgagca ccggggccac gatcgtccac tgcgccgcgg gcaaggaccg caccggcacc
     2941 gtggtggcga tggcgctgtc ggttgctggc gtcgccgacg accagatcgt cgccgactac
     3001 gtggccagcg ccgagcggat cgagcggatc gtggcacggc tgctggagcg tcccacctac
     3061 gcggaggcca tgcgcgacca gccgatgtcc caccacatcc cacgggcgga gacgatggag
     3121 cgtctgctcg cggtgctcgc ggaaagccac ggtggcgccg caggatggct gcgcgagcaa
     3181 ggctggagcg atcagcaggt ggacgccctg cgatcccggc tccgcgcgtg acggcgccga
     3241 cgggccccct ccccgcgccc caggaccgac cccgacgcga gcgtcgcgcg atgcgcgtcc
     3301 tgctcgtcga cgacctcgac cgcatcctgc tgttccgcga ctgcgacctg gggctcgacc
     3361 ccgtgccgca ctggtggatc accccagggg gcggcgtcga tccgggcgag agcgaccggg
     3421 acgccgcggt gcgcgaggtc gccgaggaga ccggactggt catcggcgag tcggacctgc
     3481 gagggccact ggccacccgc accgtcgtcc atggctacag cgacgtcgtc accacgcagg
     3541 ccgaggcgtt ctggctcgtg cgttgcgctg ccttcgaggt gagcaccgac ggacacaccg
     3601 agctcgagcg cctgacgatg accgagcacc gctggtggtc ccgtgccgag ctggaggcga
     3661 caacgcaaga ggtctggccc cgcgacctcc tcactctctg gagcgccgct gaggaccaca
     3721 ctgccgacct caccccgcga gacctcggca tcgtcgagga gtcgaccgtt cccgggtgaa
     3781 ctgccgtcgc ggcataccgc tgccgccacg cgctcaggtc agcgggtcgg cttgtccgtc
     3841 acccacagtc ggatggtgcc ctgcaccacg ggcttcccgt cgtcacgggt ggcggtcact
     3901 cgcaccggga tctccacctc accggcgcgc tcccagtcag cagggtcggt ctcggccaca
     3961 caccggatgt cgctcgtggc cttggcggtg tactccacct ccatgccgcg cgggatccag
     4021 cgccgcgacg ctgggatcga ggcttcggcc agcgccccca tggcggcctc cagtccgttg
     4081 cagatcgcga tcacgtggac ggtgccgatg tggttctgca cgcgccggcg cttcttgaga
     4141 gtcagctcgg cacggttggg cacgagggtg acgaagcgcg gccgagccgt cctgaagtac
     4201 ggcgccgcct gttcgaagac aagcgagaac aggcggttgc cctgggggta tgccgcgagc
     4261 cgctggtaca gcgcgtaggt gttgatcatc cgtcaacgtt accggtcagt aaccatcagc
     4321 aggaggtgac ctgcgctact tcttggcctt ctccgcctgg ctggtgtccg aggacaacgc
     4381 ggcgatgaag gcctcctggg gcacctcgac ccgacccacc atcttcatcc gcttcttgcc
     4441 ctccttctgc ttctcgagca gcttgcgctt gcggctgatg tcgccgccgt agcacttggc
     4501 gagcacgtcc ttgcggatcg cgcggatgtt ctctcgggcg atgacccggg aaccgatggc
     4561 ggcctggatc ggcacctcga actgctgacg cgggatgagg tccttgagct tgccggccat
     4621 catcacgcca taggcgtagg ccttgtcctt gtgcacgatc gagctgaagg cgtccacggt
     4681 ttcgccctgg agcaggatgt cgaccttcac cagatcggcg acctggtcac cgtcgggttc
     4741 gtagtccagc gacgcataac cacgggtccg cgacttgagc tggtcgaaga agtcgaacac
     4801 gatctcggcc aagggcagcg tgtagcgcat ctcgacgcgc tcctcggaca agtagtccat
     4861 cccccgcaac gtgccgcgct tctgctggca gagctccatg accgcgccga tgaactcgct
     4921 gggcgcgagc accgtggcgc gcaccaccgg ctcggtgacc gaggtgatct tgccgtacgg
     4981 gaactcggag gggttggtga ccacgagctg cttgccgtcg tcgagcgtca cgtcatacac
     5041 gacgttcggc agggtagaga tgagatcgag gttgaactcg cgctcgagcc gctcgcggac
     5101 gatctcgagg tgcagcatcc cgaggaagcc gatgcggaaa ccgaacccga gggccgcgga
     5161 cgtctcaggc tcgtagacca gcgccgcgtc gttgagcttg agcttgtcga gggcgtcccg
     5221 caggtcgggg tagtccgagc cgtcgatcgg gtacagcccc gagaacacca tcggcttcgg
     5281 gtcgcggtag ccgccaagcg ccttggtggc cggcttcgcg gcgttcgtca cggtgtcgcc
     5341 gactcgcgac tgccgcacgt ccttgacgcc ggtgatgaga tagccgacct cgccgacgcc
     5401 gaggcccttg gcgggcgtcg gctccggaga ggagacgccg atctcgagca gctcatgggt
     5461 ggctcgggtg gacatcatcg cgatcttctc gcgcgggttg aggttgccgt cgatgacccg
     5521 cacgtaggtg acgacgccgc ggtaggtgtc gtagacggag tcgaagatca tggcccgggc
     5581 aggcgcatcc gcatcgccca cgggaggcgg aagctgggtg acgatctggt cgagcagggg
     5641 cacgaccccg acgccggtct tgcccgagac gcgcaggcag tcctccggct cgcagccgat
     5701 cagcccggcg agctcctcgg cgaacttctc cggctgggcc gccggcaggt cgatcttgtt
     5761 gagcaccggg atgatggtca gctcgttctc catcgcgaga tagaggttgg ccagagtctg
     5821 cgcctcgatg ccctgggccg cgtcgacgag gagcacggca ccctcgcagg cagccagcga
     5881 ccgtgacacc tcgtaggtga agtcgacgtg accgggggtg tcgatcatgt tgaggcaata
     5941 caccacggac acccccgcgg agttcacgac ctcccacggc atacgaacgg cctggctctt
     6001 gatcgtgatg ccgcgttcgc gctcgatgtc catgcggtcg aggtactgcg cgcgcatggc
     6061 gcgctcgtcc acgatgccgg tgacctgaag catccggtcg gcgagggtgg acttgccgtg
     6121 gtcgatatgg gcaatgatgc tgagattgcg gatcttcgtc gagtcgacgg gtacgaaaga
     6181 ggcggccacg gtcactcaag gctatcggcc cgcgaccccg cctcgaagcg ggtggcggcg
     6241 agttctctgc tagcatttct aggcccgcgc gaagacacgc gcgacgagaa cgaggttgtt
     6301 tcgtggccaa catcaaaagc caaatcaa
//
LOCUS       DASYFY010000547         7921 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_302860, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000547 DASYFY010000000
VERSION     DASYFY010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7921
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302860"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..1053)
                     /locus_tag="VGN19_11075"
     CDS             complement(67..1053)
                     /locus_tag="VGN19_11075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018772835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03086 family metal-binding protein"
                     /protein_id="HEV7196475.1"
                     /translation="MTTTATVAAEKTAFLPVPPDDAFALITEPDRLRRWKTIASRVDL
                     RAGGEYRFTIVPGHIARGTFREVVPGQRIVFGWGWEGGDDLLPDASTVTVTLEPVDGG
                     TLVRLVHEGLTEEQAASHLEGWTHFLSRLEKAAAEGDAGPDEWAWAPAELNELTSADA
                     TLAVLQRVLLNVTEQDRGKPTACQDFTVHQLAEHLFGTLAFVGGLAGVEVTRTPAPSL
                     EAAVAEVAQQVNEAWAVRGLAGSVSAGDFDMPASMAVGILNLEYLVHAWDFAQATGQD
                     VHVSEEVAQYVHDLGAQIIPGARANGSFGPAIEIADRAGALDRLVALSGRTA"
     gene            complement(1092..1397)
                     /locus_tag="VGN19_11080"
     CDS             complement(1092..1397)
                     /locus_tag="VGN19_11080"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7196476.1"
                     /translation="MTDALSAAAEPTRRRILQLLASGPLSVTDLAEQFPVTRSAISQH
                     LLVLSGAGLVVAVKAGRQRFYSVVPGGIARLRAEIDRFWTAELDLLVADASRLAPRP"
     gene            complement(1465..2058)
                     /locus_tag="VGN19_11085"
     CDS             complement(1465..2058)
                     /locus_tag="VGN19_11085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEV7196477.1"
                     /translation="MSPRGRRPGGVDTRAAILDAARTEFADGGYDATSLRGIARRAEV
                     DPALLHHYFGGKPQLFAAVMDIPADPALLIGRIMDGPRDEVGEALVRTFLAVWDSPSG
                     TERFQALIRSAVTHDDATRMLREFLTREIFGRILGHLYAEQPAPADVELRAGLAASQM
                     VGLAMMRYIVQFPAVVEASHDELSRLIGPTIQRYLAP"
     gene            complement(2055..2879)
                     /locus_tag="VGN19_11090"
     CDS             complement(2055..2879)
                     /locus_tag="VGN19_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEV7196478.1"
                     /translation="MSSVVSIPGTTVALSTASVYPEGCAAGFAAAARLGYDAVEVMVW
                     TDPISQEAGAISALAELHGIPVVSVHAPTLLLTQRIWGPDPWTKVDKSVELAQEVGAD
                     TVVLHPPFRWQREYAAEFVEGVALREHESGIRLAVENMFPWRARQREYQAYLPHWDPV
                     PQPYDHVTLDLSHTATAGSDAMEMAWALGPRLTHVHLADGLGSLKDEHLVPGRGGQPC
                     AELLELLAGQGFSGSVVVEVGTRKLTPEQRDLDLAESLAFARLHLATAVTSEGEAR"
     gene            complement(2903..3829)
                     /locus_tag="VGN19_11095"
     CDS             complement(2903..3829)
                     /locus_tag="VGN19_11095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HEV7196479.1"
                     /translation="MRLGVVDVGSNTVHLLVVDAHRGAQPLPATSHKIELRLSEHVAD
                     DGSIAATGELALVKFVRECLTVAEDQGVEEVMAFATSAIREAPNGEDVLARVRAETGV
                     GLQVLSGEEEARLTFLAARRWFGWSSGTLLVVDIGGGSLELAAGVDEDPDAAVSLPLG
                     AGRLTRDLLPGNPPGPDVLRAARREIRLRLAGATRPLTKAGPPDRAVGTSKTMRSLAR
                     ALGAAPSSDGPYAVRQLERADLTLLVGRLAQMTAAERAHLPGVSTGRSRQLLAGALVA
                     EAVLDLLGVQRLEICPWALREGVILSRLDAMR"
     gene            3906..4715
                     /locus_tag="VGN19_11100"
     CDS             3906..4715
                     /locus_tag="VGN19_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196480.1"
                     /translation="MPETPLDIARIWVEFADPADTSQAPQRFRCDLTWLTSSWTCIFG
                     SGCQGIYADRPDDGCCTLGAHFTDNDDVKRVKAVVKELGEDEWQYHPGTTKQSAWTDV
                     EDDALKTKVVDGACIFLNRPGFPAGAGCALHQHGVLTGKAPHTVKPDVCWQLPIRRTY
                     RTVELPDGSSWQEVTITEYDRRGWGAGGHDLDWYCSGNSEAHVGREPVYRSNRAELVE
                     LMGEPAYAELELRCEAHLASVKAARNAYSRKMLPLLVHPATLAAQDGRKRP"
     gene            4712..5401
                     /locus_tag="VGN19_11105"
     CDS             4712..5401
                     /locus_tag="VGN19_11105"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7196481.1"
                     /translation="MSEPTRSPNIWDTPDVYEVENLGVDRAGVIEAAMSSLHAFEGAD
                     LVDVGCGSGFHLPRFAALGCASVIGVEPHPPLVELAADRVKGIAGVRAVEGVAQSLPL
                     PDDSVDIAHARWAYFFGAGCEPGLAELTRVLRPGGTAYVIDNDATRSTFGRWFTRAYP
                     TYDPAAVERFWNRQGWSRERLTIDWTFDNRDDFEQVVRIEFPETAAEGILAEHAGTSV
                     DYAVSLWHRRY"
     gene            5463..5891
                     /locus_tag="VGN19_11110"
     CDS             5463..5891
                     /locus_tag="VGN19_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEV7196482.1"
                     /translation="MTGHVATARIEVHASPERVWEAMTDPVQIAEYMMGSRVETDWRP
                     GSPITWNGEWDGRPYQDKGEVLQVEPGRLLEVTHFSPLGGQDDVPENYHTVRYELGSS
                     GEVTSVDLTQDGCADAEQAKQFSQNWQGMLEGLRMVAETD"
     gene            5962..7347
                     /gene="radA"
                     /locus_tag="VGN19_11115"
     CDS             5962..7347
                     /gene="radA"
                     /locus_tag="VGN19_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015780346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEV7196483.1"
                     /translation="MAAKGSTKVSGFRCSECGWTAVKWVGRCGECQAWGSVSEVGAVT
                     VRTTAASRVERPALPIGQVDVRRAEARSTGVSEFDRVLGGGLVPGAVVLVAGEPGIGK
                     STLLLDVAARAARQGDGTTVLYVTGEESAAQVRMRAERIEAMAASLFLASETDLAAVL
                     GQIDAIQPDLVVVDSVQTIASSEVEGAAGNVSQVREVAASLIQVAKSRGIATLLVGHV
                     TKDGSIAGPRVLEHLVDVVVQFEGDRHSRLRLVRAVKNRYGPTDEVGCFDLSDVGIVG
                     LADPSGLFLSRGTLTVPGTCVTVTLEGRRPLMTEVQALVAKSEIPTPRRATSGLDSAR
                     VAMIIAVLARRAGAPIGTQDVYLSTVGGVRLTEPASDLAVALAIASAVTDRPMVEHSV
                     AFGELGLAGELRPVTGIPRRLSEAARLGFHTAFVPPGVLGTGPMIEGMRVVECPDIRT
                     AVGAALQGSPR"
     gene            7485..>7921
                     /gene="disA"
                     /locus_tag="VGN19_11120"
     CDS             7485..>7921
                     /gene="disA"
                     /locus_tag="VGN19_11120"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA integrity scanning diadenylate cyclase DisA"
                     /protein_id="HEV7196484.1"
                     /translation="MDLREDDALRATLAAVAPGTELRDGLERILRGRTGALIVLGHDR
                     TVESLSTGGFPLDVEFSATRLRELAKMDGGIVLDREASRILRAATQLVPDPSIETSES
                     GTRHRTAERVAKQTGYPVISVSQSMRIVAIYVDGRRYVLEDSSA"
BASE COUNT         1229 a         2760 c         2798 g         1134 t
ORIGIN      
        1 tcgtgagtgc ggttttgtgt gggtgttgcg tgagtgcgtg gtcagtagct ggtggcgcta
       61 gctgcgtcag gcggtgcgtc cggacagggc gacgagccgg tcgagcgcgc cggcccggtc
      121 cgcgatctcg atggcgggcc cgaaggaccc gttggcgcgg gcacccggga tgatctgggc
      181 gccgaggtcg tggacgtact gggcgacctc ttcggagacg tgcacgtcct ggccggtcgc
      241 ctgggcgaag tcccacgcgt gcacgaggta ctcgaggttg aggatgccca cggccatgct
      301 ggccggcatg tcgaagtcgc ccgcgctcac cgagcccgcc aggccgcgaa ccgcccaagc
      361 ctcgttgacc tgttgggcga cctcggccac tgcggcctcg agcgacggcg ccggcgtccg
      421 ggtgacctcg acgcccgcga gcccgcccac gaaggccagc gtgccgaaga ggtgctcggc
      481 cagctggtgg acggtgaagt cctggcacgc ggtcggcttg ccgcggtcct gctcggtgac
      541 gttcaggagt acccgctgga gcacggccag ggtcgcgtcc gcgctggtga gctcgttgag
      601 ctccgcaggc gcccaggccc actcgtccgg gcccgcgtca ccttcggccg cggccttctc
      661 gagacggctc aggaagtggg tccagccctc caggtggctg gcggcctgct cctcggtcag
      721 cccctcgtgg accagacgca ccagggtgcc gccgtcgacg ggctcgaggg tcaccgtcac
      781 cgtggaagcg tccggcagca ggtcgtcgcc gccttcccag ccccacccga agacgatgcg
      841 ctgaccggga accacctcgc ggaacgtgcc gcgtgcgatg tggcctggga cgatggtgaa
      901 ccggtactca ccgcccgccc gcaggtcgac ccgcgaggcg atggtcttcc agcggcgcag
      961 ccggtcgggc tcggtgatga gagcgaacgc atcgtcgggc gggaccggaa ggaaggcggt
     1021 cttctctgcg gcaacggtgg cggtggtggt catggcggtc tccggtcgat ggtggggata
     1081 tggggaacgg gtcatggtcg aggcgccagg cggctggcat cagccacgag aagatccagc
     1141 tcggccgtcc agaagcggtc gatctcggcc ctgagcctgg cgatgccacc cggcacgacg
     1201 ctgtagaagc gctggcggcc ggccttgacg gcgacgacga ggccagcgcc cgacagcacg
     1261 agcagatgct gggagatcgc cgagcgggtc acagggaact gctcggccag gtcggtcacg
     1321 gacagtgggc ccgaggccag cagctgcagg atgcgtcgcc gggtgggctc cgctgctgcg
     1381 ctgagggcgt cggtcacgtt caatacgtta gtcacgacta acgcgttagg caaccacgca
     1441 ggtcaaagac ctttcttgcg gggcctaggg agcgaggtag cgctggatcg tcgggccgat
     1501 cagccggctc agctcgtcgt gactggcctc gacgacggcg ggaaactgca cgatgtaccg
     1561 catcatggcc aggcccacca tctgtgaggc ggccaagccg gcgcgcagct ccacgtccgc
     1621 gggggcgggc tgctcggcat acaggtgccc caggatgcgc ccgaagatct cgcgggtcag
     1681 gaactccctg agcattcggg tggcatcgtc gtgggtcacg gccgagcgga tcagcgcctg
     1741 gaagcgttcg gttcctgagg gcgagtccca gaccgcgagg aaggtccgca ccagcgcctc
     1801 acccacctcg tcgcgtgggc cgtccatgat gcggccgatc aggagggctg ggtccgcggg
     1861 gatgtccatg accgccgcga aaagctgtgg cttgcccccg aagtagtggt gcagcagggc
     1921 gggatccacc tcggcgcgcc gggcgatgcc gcgcagcgag gtggcgtcgt agccaccgtc
     1981 ggcgaactcc gtgcgcgccg cgtcgaggat ggcggccctc gtgtccacgc ctcccgggcg
     2041 ccggccccgc gggctcatcg ggcctctccc tcggacgtga cggccgtcgc cagatgcagc
     2101 cgcgcgaaag ccagcgactc ggcaaggtcg aggtcccgct gctcgggagt cagcttgcgc
     2161 gtgccgacct cgacgacgac cgatcccgaa aacccttgtc cggcaagcag ttccagcagc
     2221 tcggcacagg gctgcccacc ccgaccgggc accagatgct cgtccttgag cgagcccagc
     2281 ccgtcggcca gatggacgtg ggtcagccgc ggaccgagcg cccaggccat ctccatggcg
     2341 tccgaccctg cggtggcggt gtgcgacagg tcgagcgtga catggtcgta cggctgcggg
     2401 acggggtccc agtgcggcag gtacgcctgg tactcacgct gccgcgcccg ccacgggaac
     2461 atgttctcca cggccagtcg gatgccgctc tcgtgttcgc gaagcgccac cccctcgacg
     2521 aactcggcgg cgtactcccg ctgccagcga aagggcgggt gcagcacgac ggtgtcggcg
     2581 ccgacctcct gggccagctc gaccgacttg tccaccttgg tccaggggtc cggtccccag
     2641 atgcgctggg tcagcaacag ggtcggcgca tgcaccgaca ccacgggtat gccgtgcagc
     2701 tcagcgagcg cggagatcgc cccggcctcc tgggagatgg ggtccgtcca gaccatgacc
     2761 tcgacggcgt cgtacccgag ccgggcggct gccgcgaatc cggcggcaca tccctccgga
     2821 tagaccgagg cggtcgacag cgccacggtg gtgccgggaa tcgagaccac cgaggacata
     2881 gcccgagact accgagggca cctcatcgca tcgcatcgag acggctcagg atcacgccct
     2941 cgcgcagcgc ccatggacag atctcgagtc gctgcacgcc cagcaggtcc agaaccgcct
     3001 cggccaccag ggcgcccgcc agcagctgcc gggagcggcc cgtcgagact ccggggaggt
     3061 gggcacgctc ggcggccgtc atctgggcaa gccgtccgac cagcagggtc aggtcggcgc
     3121 gctcgagctg ccgcacggca tacgggccgt cactgctcgg ggccgcaccc agcgcccgcg
     3181 ccaaggaccg catggtcttg gaggtcccga cggctcggtc gggcgggccg gccttggtga
     3241 gcgggcgggt ggccccggca agccgcaggc ggatctcacg gcgggcggcc cgcaacacgt
     3301 ccgggccagg agggttcccc ggcaagaggt cgcgcgtgag gcgcccggca cccagcggca
     3361 gcgagaccgc ggcatcggga tcctcgtcga cgcccgcagc gagctcgagc gacccaccac
     3421 cgatgtcgac cacgaggagc gtgccactgg accagccgaa ccaccggcgc gccgcgagga
     3481 acgtcagtcg tgcctcctcc tcgccggaga gcacctggag ccccacgccc gtctcggcgc
     3541 gcacccgagc caacacgtcc tcaccgttgg gagcctctcg aatggcgctg gtggcgaacg
     3601 ccatgacctc ctccacgccc tggtcctcgg ccacggtcag gcattcgcgg acgaacttga
     3661 cgagggccag ctccccagtg gcggcgatgc tcccgtcgtc ggcgacgtgc tcggaaagcc
     3721 gcagctcgat cttgtgggag gtggcgggca acggctgggc gccgcggtgg gcgtcgacca
     3781 cgaggaggtg gacggtgttg gagccgacgt caacaactcc aaggcgcatg gaggcacgct
     3841 atcgggccgc ctcggtcgcg cggctgccat atcggcgcgt ctacccgaga cataggctgg
     3901 ctcacgtgcc agaaaccccg ctcgacatcg cccgtatctg ggtggagttc gccgacccgg
     3961 cggacacttc ccaagcacca cagcggttcc gctgcgacct gacctggctg acctcgagct
     4021 ggacgtgcat cttcggcagc gggtgccaag ggatctacgc cgaccgcccc gacgacggct
     4081 gctgcaccct cggtgcccac ttcaccgaca acgacgacgt caagcgcgtc aaggccgtgg
     4141 tcaaagagct gggcgaggac gagtggcagt accacccggg cacgaccaag cagtcggcct
     4201 ggaccgacgt cgaggatgac gcgctcaaga cgaaggtggt ggacggcgcg tgcatcttcc
     4261 tgaaccgtcc gggcttccct gccggagccg gttgcgccct gcaccagcac ggggtactga
     4321 ccggcaaggc accgcacacg gtcaagcccg acgtgtgctg gcagctgccc atccggcgca
     4381 cctaccggac cgtcgagctg ccggacggct cgtcgtggca ggaggtcacg atcaccgagt
     4441 acgaccggcg cgggtggggt gccggcggac acgacctcga ctggtactgc tcggggaact
     4501 ccgaggccca cgtcgggcgc gagccggtgt accggagcaa ccgcgccgag ctcgtcgagc
     4561 tcatgggcga gcctgcgtat gccgagctgg agctgcgctg cgaggcgcac ctcgccagcg
     4621 tcaaggcggc gcgaaacgct tactctcgca agatgcttcc cctcctggta caccccgcga
     4681 ccctggccgc ccaggacgga cgcaagcggc cgtgagcgag ccaacccgca gcccgaacat
     4741 ctgggacacc ccggacgtct acgaggtcga gaacctcggc gtcgaccggg ccggggtcat
     4801 tgaggcagcg atgagctcgc tgcacgcctt cgagggcgcc gacctcgtcg acgtcgggtg
     4861 cggcagcgga ttccacctgc cgcggttcgc cgccttgggt tgcgccagcg tcatcggcgt
     4921 cgagccgcat ccgccgctcg tcgagctggc ggcggaccgc gtcaagggga tcgcaggcgt
     4981 gcgggcggtc gagggcgtcg cccagtccct cccgttgccc gacgactcgg tcgacatcgc
     5041 ccatgcccgc tgggcctact tcttcggcgc cgggtgcgag cccggacttg ccgagctcac
     5101 ccgggtcctg cggcccggtg gcacggcata cgtcatcgac aacgacgcca cccgatcgac
     5161 gttcgggcgg tggttcaccc gggcgtaccc cacctacgac cccgcagcgg tcgaacggtt
     5221 ctggaaccgt cagggctggt cgcgagagcg gctcaccatc gactggacgt tcgacaaccg
     5281 cgacgacttc gagcaggtgg tgcgcatcga gttccccgag accgccgccg aggggatcct
     5341 cgccgagcac gccggcacat cggtcgacta tgccgtgagc ctgtggcacc gtcggtactg
     5401 atcacccccg gacggtgcac cccggaacac ccagagcacg ttgagagcag ctggaggcag
     5461 tcatgaccgg tcacgtcgcc acggcccgca tcgaggtcca cgcctcaccc gaacgcgtct
     5521 gggaggccat gaccgacccg gtgcagatcg cggagtacat gatgggcagc cgagtcgaga
     5581 cggactggcg gcccggtagc cccatcacct ggaacggcga gtgggatgga cgcccgtacc
     5641 aggacaaggg cgaggtgctg caggtcgagc ccggtcggct gctggaggtg acccacttca
     5701 gcccgttggg tggtcaggac gatgttcccg agaactacca caccgtgcgc tacgagctcg
     5761 gttcgtcggg tgaggtcacg agcgtcgacc tgacccagga cggctgcgcg gacgccgagc
     5821 aggccaagca gttctcgcag aactggcaag gcatgctgga gggcttgcga atggtcgccg
     5881 agacggactg acgagcctgg gaccgctgac gcgccagccg gcgtctccgg gctgtcggtg
     5941 cgcccccgta ggttgtcagt catggcagcc aagggatcga ccaaggtgag cggcttccgc
     6001 tgctcggagt gcggctggac cgcggtcaag tgggtcggtc gctgcggcga gtgccaggcg
     6061 tggggcagcg tgagcgaggt cggcgccgtt accgtgcgca ccaccgccgc cagccgcgtc
     6121 gagcgacccg cattgcccat cggtcaggtg gacgtgcgtc gggcggaggc acgcagcacc
     6181 ggcgtgagcg agttcgaccg ggtgctcggc ggtgggctcg tgcccggggc agtcgtcctg
     6241 gtcgcaggcg agcccgggat cggcaagtcg acgctgctgc tcgatgtggc ggcacgcgct
     6301 gcacgccaag gtgacggcac taccgtcctc tacgtcaccg gggaagagtc tgcagcccag
     6361 gtgcggatgc gggccgagcg catcgaggcg atggccgcct cgctgttcct cgccagcgag
     6421 accgatcttg ccgccgtgtt gggtcagatc gacgcgatcc aacctgacct cgtcgtcgtc
     6481 gactcggtgc agacgatcgc cagttccgag gtcgaggggg ccgccggcaa cgtcagtcag
     6541 gtccgggagg tcgccgcgtc gctgatccag gtcgccaagt cccgcggcat cgccaccctg
     6601 ctcgtcggtc acgtcaccaa ggacggttcc attgcggggc cacgggttct ggagcacctg
     6661 gtcgacgtcg tggtccagtt cgagggcgat cgtcactccc gcctgcggct ggtccgggcc
     6721 gtcaagaacc gctacggccc caccgacgag gtcgggtgct tcgacctgtc cgacgtgggc
     6781 atcgtcgggt tggccgatcc cagcggcctg tttctgtcgc gaggcaccct gaccgttccg
     6841 ggcacctgcg tcacggtcac cctcgagggg cgacgcccgc tgatgaccga ggtccaggcc
     6901 ttggtggcca agagcgagat ccccacgccc cgacgcgcga ccagcggtct ggactcggcc
     6961 cgggtcgcca tgatcatcgc cgttctcgcc cgtcgcgcag gggcgcccat cgggacccag
     7021 gacgtctacc tctcgacggt cggcggggtg cgtctgaccg agccggcctc cgatctcgcg
     7081 gttgcgctgg ccatcgccag cgccgtgacc gaccgcccga tggtcgagca ctccgtggcc
     7141 ttcggcgagc tcggcctcgc cggcgagctc cgcccagtca ccggcatacc ccgacggctc
     7201 agcgaggccg cacgcctcgg gttccacacg gccttcgtgc cgccaggggt cctcggcacc
     7261 gggccgatga tcgagggcat gcgggtggtc gaatgtccag acatccgaac ggcggtcggc
     7321 gccgcactgc agggttcgcc ccgttagact cgcgccagac catccggtac caagggccat
     7381 ccagtcacac ggcatccagt cacccggcat accgtcacac ggcataccgt cagacggcat
     7441 accgtcggac aggccatcca gtcggacagc aaggggcgta cgcagtggat cttcgcgagg
     7501 acgacgcgct gcgcgccacc ctcgcagcgg tggcccccgg caccgagctg cgtgacggtc
     7561 tggagcgcat cctgcgggga cgcaccggcg ccttgatcgt cctgggccat gaccgcaccg
     7621 tcgaaagcct gtcgaccggc ggcttccccc tggacgtgga gttctccgcc acccggctgc
     7681 gagagctggc aaagatggac ggcggcatcg tgctcgaccg cgaggcctcc cggatccttc
     7741 gcgccgcgac ccagctggtg cccgacccgt cgatcgagac cagcgagtcc ggcacccggc
     7801 accgcaccgc cgagcgggtt gccaagcaga ccggctatcc cgtcatctcg gtgagccagt
     7861 cgatgcgcat cgtggccatc tacgtcgacg gtcgccgcta cgtgctcgag gactccagtg
     7921 c
//
LOCUS       DASYFY010000548         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1354984, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000548 DASYFY010000000
VERSION     DASYFY010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354984"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1254)
                     /locus_tag="VGN19_11125"
     CDS             complement(<1..1254)
                     /locus_tag="VGN19_11125"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010549714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEV7196485.1"
                     /translation="MSTRADGPPGQTQAVELTIGGMTCASCASRIEKKLNRMPGVSAS
                     VNYATEKAKVTYAAEVLPTDLVATVEATGYTATLPAPPTPHSSDQSDDSTAEGVTQDA
                     LAWRQRLVVSGVLALPVVVLSMVPAVQLDHWQWVCLTLASPVVVWGALPFHRAAWLNL
                     RHGAATMDTLISVGVGAAYLWSLWALLFTDAGMTGTRMAFDLVPGRAAAGEPHLYLEV
                     AAAVTPFIVAGRYFEARAKHASGAALRALLNLGAKDVAVLRETRDGWTEVRMPVGQLA
                     VGDHFVVRPGEKIATDGVVSVGTSALDTSLLTGESVPVEVGPGDAVAGATVNAGGRLV
                     VRATRVGSDTQLAQMARLVEDAQNGKAAVQRLADRVSAVFVPVVIGLSLATLAAWLLT
                     GHSPSTALSAAVAVLIIACPCALGLA"
     gene            complement(1238..1525)
                     /locus_tag="VGN19_11130"
     CDS             complement(1238..1525)
                     /locus_tag="VGN19_11130"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEV7196486.1"
                     /translation="MSTQTFEVSGMTCSHCVSAVTSELQQLPGVIGVSVALVPTGMST
                     VTVESAAPVGRPAVEAALDEAGDYALAPDAAATPGSHAQEAREDNQDVHSR"
BASE COUNT          237 a          542 c          556 g          214 t
ORIGIN      
        1 ggccagtccc agggcgcacg ggcaggcgat gatcaggacg gccaccgccg cggagagggc
       61 cgtgctgggg gagtgcccgg tcagcagcca ggcggcgagc gtggccagtg acaggccgat
      121 gaccaccggc acgaacactg ctgacacgcg atcggccagg cgctgcaccg ctgccttccc
      181 gttctgcgcg tcctcgacga gcctggccat ctgggcgagc tgggtgtccg acccgacccg
      241 tgtggcccgg accacgaggc ggccgcctgc attcaccgtg gccccggcca cggcatcgcc
      301 cggtcccacc tccacgggaa ccgactcgcc cgtgaggagg gaggtgtcga gggcggaggt
      361 gcccacgctg acgacgccgt cggtggcgat cttctcgcca ggacgcacga cgaagtggtc
      421 accgacggcc agctggccga ccggcatacg aacctcggtc cagccgtcgc gcgtctctcg
      481 cagcacggcg acgtccttgg cgcccaggtt cagcaacgcg cgcaacgcgg ccccggaggc
      541 gtgcttggcc cgcgcttcga agtagcgacc ggccacgata aacggggtca ccgcggctgc
      601 gacctcgagg tacagatgcg gctcgccggc cgcagcccga cccggcacga ggtcgaaggc
      661 catgcgcgtg cccgtcatgc ccgcatcggt gaacagcagg gcccagaggg accacaggta
      721 tgccgcgccg acaccgaccg agatgagcgt gtccatggtg gccgcaccgt gccgcagatt
      781 gagccaggcg gctcggtgga agggcagcgc cccccagacc accacaggtg aggcgagcgt
      841 gaggcagacc cactgccaat ggtccaactg aacagccggg accatcgaca gcaccacgac
      901 cgggagggcg aggacgcctg agacgacgag ccgctggcgc caggccagcg cgtcctgcgt
      961 gacaccctcg gcagtgctgt cgtcgctctg gtcactgctg tggggcgtcg ggggagccgg
     1021 cagggtggcc gtgtagccgg tcgcctccac cgtggccacg aggtccgtcg ggaggacctc
     1081 ggcggcatac gtgaccttgg ccttctcggt ggcatagttc acgctcgccg agacgccggg
     1141 catgcggttg agcttcttct cgatgcgcga ggcgcacgac gcgcacgtca tgccgccgat
     1201 cgtgagctcg acggcctggg tctgcccggg tgggccgtca gcgcgagtgg acatcctggt
     1261 tgtcctcccg tgcttcctgg gcgtggctgc caggggtcgc cgcggcgtct ggagccagcg
     1321 cgtagtcgcc ggcctcgtcc agcgcggcct cgaccgcggg ccggccgacg ggcgcggcgc
     1381 tctcgacggt cacggtcgac atcccggtcg gcaccagcgc gacggatacg ccgatgaccc
     1441 ctggaagctg ttgaagctcg ctggtcacgg cactcacgca gtggctgcag gtcatgccgc
     1501 tgacctcgaa ggtctgggtg ctcacgacgg atctcctttg ctgctcaag
//
LOCUS       DASYFY010000549        13868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1774495, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000549 DASYFY010000000
VERSION     DASYFY010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 13868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13868
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1774495"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..678
                     /locus_tag="VGN19_11135"
     CDS             394..678
                     /locus_tag="VGN19_11135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196487.1"
                     /translation="MLRPRLVRRIVLAATGPRGGHQIHDRTGDINRMANNADNGIKDL
                     LQNSFEVTETSRPFGRQYVQKAFARTEGGPAQRPGGHARPARRDRCLGRP"
     gene            complement(991..3762)
                     /locus_tag="VGN19_11140"
     CDS             complement(991..3762)
                     /locus_tag="VGN19_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020014071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7196488.1"
                     /translation="MTAPGLTLWGRSRERQRLDDALDRVRGGRSAVLVLRGQAGVGKT
                     TLLQYVARQATDCRITRITGVESELELPFAALHQLCGPVLEGLETLPEPQARALKVAF
                     GLAEGNVPDRFVLGLAVLGLLAEAAAKRPLVCVVDDAQWLDEATRQVLGVVGRRLDAE
                     SVLLLLAVRETPDEHPFPGLPDLVVEGLDDEDARVLLAAEVPGPLDDRVRDRLVAETG
                     GNPLALLELVKGTSEAELAGGFAIPPTATLTGHLQEHYLQRVRSLPAPTQLLMLVAAA
                     DPTGDATLLWRAARALEVGPEVVGPAEAQQLLDVGSAVRFRHPLVRSAAYAAGSPEDR
                     VAAHRALADATDPQRDPDRRVWHLAASTSGPDEGVAADLERSADRAQARAGQSAAAAF
                     LQRAVALTADPGRRADRALAAAHANLHAGAYEVGLGLLAQAEADAVDDLQRARAEQLR
                     GEISRASTAGSRAPVQLLEAATRLEPLDARLARDTYLDAWAAALVAGRMAGPGGGLVD
                     VCVAARASRSTPDGPEPSDLLLEGLVSVVLDAPAEAAPSLRQAVDAFLGERMSTDHWL
                     HWGALASNAALALWDIDCWVDVSARHVRLARESGALAPLAAALNVRRVVAIWCGDFET
                     ATALGVEEQVVKEVTGTHRASYGGLFLAAYQGIPEEVTPLIEATAQEALARGEGLGAQ
                     IADRAAALLHTALGHYTQALAAAQRAAGESLGPFTWQALPDLVEAAKRAGQVDTAADA
                     LRRLQATTAGTGSDWGQGLEARSRALLNEGELAEQAYAEAVSRLGRTPLRPELARAQL
                     LYGEWLRREGRRVDARTQLHAAHETFAAIGAEGFAERTRRELLATGEKVRKRQPDTLN
                     DLTPQEEQIARLAGDGRSNPEIAAELYISARTVEWHLRKVFGKLDISSRRELQGALSS
                     RGRIRHPRV"
     gene            complement(3856..4671)
                     /locus_tag="VGN19_11145"
                     /pseudo
     CDS             complement(3856..4671)
                     /locus_tag="VGN19_11145"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
     gene            complement(5172..5699)
                     /locus_tag="VGN19_11150"
     CDS             complement(5172..5699)
                     /locus_tag="VGN19_11150"
                     /inference="COORDINATES: protein motif:HMM:NF039283.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase-like domain-containing protein"
                     /protein_id="HEV7196489.1"
                     /translation="MSSTPIGDHALLSDCHSSGLVDSSGSVEWLTFPRFDSPAVMARL
                     LDDDAGHWSIRPTSGFATPRRYLDDTLVLETTMRTQPGTVVLTDALALWPGNEGHALG
                     RDAPHILVRTLACVAGEVEIEVSYRPRPEYGLVVPALSPVEGVWSRAAARSGWCSPRR
                     SSWAWPPDPDAVDGC"
     gene            complement(6171..6638)
                     /locus_tag="VGN19_11155"
     CDS             complement(6171..6638)
                     /locus_tag="VGN19_11155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196490.1"
                     /translation="MSTIHLLQTTTLTPEQFVAGLTDFGPGRSELFENSADDYLKVHE
                     LAADHADVTEGSGGVWERLSYDWSDPGRVVITATDSNVWGGASGYVYRLTRELDATTD
                     IHAVIVREGKNLKGRLLGLVLGTVGKRVLAKAFVNSVKAIEKRALAATADRAA"
     gene            complement(6705..7385)
                     /locus_tag="VGN19_11160"
     CDS             complement(6705..7385)
                     /locus_tag="VGN19_11160"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7196491.1"
                     /translation="MGTSTEMANDLASDLSAYTVDLKLEAVVIPVSDVDRSKAFYAGL
                     GWRLDADFAFDNGFRVVQFTPPGSPSSVQFGTKITTAAPGSAQGLYLVVSDAQAARGQ
                     LADRGVNVSDVFHPQAPGAQFQPDGSDDRVSGLAADNASYSSFATFTDPDGNGWLLQE
                     VTTRLPGRIDSTDTSYTSVNDLMRALIRAATAHGEHEQRTGVRDEEWPAWYAAYMVAE
                     QDGTALPQ"
     gene            7676..8503
                     /locus_tag="VGN19_11165"
     CDS             7676..8503
                     /locus_tag="VGN19_11165"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7196492.1"
                     /translation="MNTTPFPDARLRTVDGVRVRCADSGGTAEPTIVLTSPWPESLYA
                     FAPIWETLRAHGRLFALDLPGFGGSERREDLLAPHAMGGFLARLIDQTGLGRPFIVAP
                     DVGTPAALFAAADHPGLFAGVIVGAGGTAVPLQLGEPLASWVLDPDLEKYRAVDPHAV
                     VNAAMDAHAGNVPDDIRADYLRSYEGDRFVESMRYVRRYPEELPLLAHLLPQIAAPVT
                     IIAGRHDHVVPLANAEFLHQRIPNSRLVVLETGHFAWEESPAEYSTTILDAIAGPRA"
     gene            8621..10495
                     /locus_tag="VGN19_11170"
     CDS             8621..10495
                     /locus_tag="VGN19_11170"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEV7196493.1"
                     /translation="MTSPFVWQRRTAGVLMSNTAIADYAFLSDRHSAALIDRSGSVDW
                     LSFPRFDSPSVFGRLLGAEAGHWSVTPSGEWTSARHYHDRTLVLETTFTTATGELVLT
                     DLLALGDDNRGHRLGTNVPHLLVRRLAGTSGSVEVNISYAPRPEYGLVVPLLGYVDGG
                     VTARGGAEWLVLTVPAALELDDGTARGRLAVHAGQTVHLALHRSTLEQAPAHVWSDAD
                     LAGTVDATVADWQSWSDLHQAYEGPWHDLVHASGRVLQGLSFQPSGAIVAAATTSLPE
                     VVGGERNWDYRYCWVRDASFTMQALWVAACPDEASTFFQFMTTAAASSIGPHSGLQIM
                     FGVGGEHDLTERELHHLPGWKNSQPVRVGNGAWNQHQIDVYGELLGAAAQLSEHIDTL
                     GEDTRRFLTACAETAAGSWMDKDQGIWEIRSEPQHFVYSKVMCWAALDRAIALSDLLH
                     ASDRTEGWKQQRDQIKETVIREAWNDEAGAFTQYFGSTALDAANLMMPIVGFLPATDP
                     RILATIDAIEQRLTDSRGLVYRYQTGDGADGLDGDEGTFLLCTFWLAQALAVADRVDR
                     ATAVFERAVACANDLGLLAEEVDPDTGELLGNFPQALSHIGLVNAAWAISEAEQRGRS
                     "
     gene            11095..12459
                     /locus_tag="VGN19_11175"
     CDS             11095..12459
                     /locus_tag="VGN19_11175"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196494.1"
                     /translation="MYLNEPSTHGTVLRVQGSGDSPALQVPVAKRTRVDDRAPTSRHA
                     AAGRFRLGRRTGFWAIAASLASLTAFSTAPSPLYGIYAQQDHLSSITITAVYAVYAVG
                     VVASLLLVGHVSDWYGRRPVLISALLVALVAALIFCASTSLPALFTARVLTGVALGAA
                     IATASAYLTDLDLGPGGSATRRSQVVSSAANVGGLATGPLLAGLLARYVPGTPRLPYL
                     IFAILLVLAVMATAAAPEGRPVPKTGPRYHPQRLAAPSDARAQFNAALIGALSIFTVY
                     GVFAGLAGAFLAGPLHHPSTAWAGVAVFLTFGTGILTQITTRSWSLRHLLRLGVPALL
                     LGLTAVVAAAWVTPPSLTLFFAGALLVGAGSGTISRGALTIVITTAAANNRAGAVASY
                     FVVGYLGLSLPVLAAGIALQHVTFQVTLLVLSVAAAAGILLASRYLLRLPTPKTGDTP
                     DTDT"
     gene            complement(12731..13159)
                     /locus_tag="VGN19_11180"
     CDS             complement(12731..13159)
                     /locus_tag="VGN19_11180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196495.1"
                     /translation="MPRTWPGSGSIPLDGAVYLDGQGGSTTVVALVAHHSGAATEAGI
                     RGLRREMDALPLPLESDLETVTLLDMSIGPTGRWVTPAERLDEILRRHPPEDPAHQAR
                     AHDRDDLLAAAERARVRLGSAMDTARVEPASSTLAWARRR"
     gene            complement(13634..>13868)
                     /locus_tag="VGN19_11185"
     CDS             complement(13634..>13868)
                     /locus_tag="VGN19_11185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196496.1"
                     /translation="FDARTATALLRLEREVRELRQRWAGAEAGRYDRTPQVVPALTAL
                     TDRVEELTLELRATGHHDTRPLLASARHRRPHA"
BASE COUNT         2093 a         5050 c         4634 g         2091 t
ORIGIN      
        1 ggaaaccgtt cgtgaagtcg aaccccagtg ccaccacgat caccaggacc aggaccagcg
       61 tgtcggccac gccccgatcc tggagcgggt gggcaaccga cggcaaccgc cggcaccggt
      121 tggtcgaccg aagttcaccc cacgttcacc gccggccacc atgggggcag gcgcggctgg
      181 ttgcgccgtg gtcggccgcc gccgaccggc ggccgatcgc cgccgaacgg gagggtgatc
      241 ctgctcgaca acgcccgacg acgggcccta cacgggtacc gtcccaagca cggcaacgca
      301 gagccaggac gcgatcgcgt tcctctaccc catggccatc aaccgggtcg acgttggctg
      361 ctgcctcggt ggcttcgtcg cccaggagtt cgcttgctgc gaccccgtct cgtccggcgc
      421 atcgtcctgg cagctaccgg tccgcgcggg ggccaccaga tccacgaccg gaccggggac
      481 atcaaccgca tggcgaacaa cgccgacaac ggcatcaagg atcttctcca gaactcgttc
      541 gaggtcaccg agaccagccg tccgttcggc cgtcagtacg tccagaaggc cttcgcccgg
      601 accgagggcg gaccggcaca acggcccgga ggtcacgcgc gcccagcgcg acgcgatcgt
      661 tgtctggggc gtccctgacc tggccgagct cgaccgtctc gccgggttca cccatccgac
      721 tatggtcgcc aacagcgccc acgacatcat gatcgcgacg gtcagctccc agaggctcgc
      781 cgaccacctt cccaacgggc agctgcggct gtttccgaac gccgcccacg ggttcccgtt
      841 ccaatacccc cgcccagttc gcgcagctcg tcacggagtc tgtccgaggc gaaactaatg
      901 tcgacgtcag ccgcggcagc gccgcgaccg gaggcagcaa gtagcgaggt gcgctgatcc
      961 aggtcttcgc cgtcgccgcc ggtccaaccg ttacaccctg gggtgcctga tccgccctcg
     1021 cgacgacagc gcaccttgga gctccctgcg ggaggagatg tcgagcttgc cgaagacctt
     1081 gcgcaagtgc cactcgacgg tgcgggcgct gatatacagt tcggcggcga tctcggggtt
     1141 ggagcgcccg tcccctgcca agcgagcgat ctgctcctct tgcggggtca ggtcgttgag
     1201 ggtgtcgggc tggcgcttgc ggaccttctc accggtcgcg agcaactcac ggcgggtccg
     1261 ttcggcgaac ccctccgcgc cgatggccgc gaacgtttcg tgggccgcgt gcagctgggt
     1321 gcgcgcgtcg actcgtcggc cctcacggcg gagccactcg ccgtagagca gctgcgcccg
     1381 ggcgagctcg ggccgcagcg gggtccggcc gagcctcgag acggcctcgg cgtacgcctg
     1441 ctcggcgagc tccccctcgt tcagcaatgc ccgcgagcga gcctccaggc cctgtcccca
     1501 gtccgagccg gttcctgcgg tcgtggcctg cagccgccgc agcgcatccg cagcggtgtc
     1561 cacctgtcca gcgcgtttgg cggcctcgac caggtccggg agcgcctgcc acgtgaacgg
     1621 gcccaggctc tcacccgccg cccgctgcgc agcggccagc gcctgcgtgt agtgcccgag
     1681 ggcggtgtgc aggagcgccg cggcccggtc ggcgatctgt gcgccgaggc cttccccacg
     1741 ggcaagggcc tcctgcgcgg tcgcctcgat gagaggggtc acctcctccg gtatcccttg
     1801 gtacgcggcg aggaagaggc cgccgtagga ggctctgtgg gtgccggtca cctctttgac
     1861 gacctgctct tccacgccga gcgcggtcgc tgtctcgaag tccccacacc agatggccac
     1921 cacccgacgc acgttgagtg cggcggccaa cggggccaga gcgcccgact cgcgggcgag
     1981 ccggacgtga cgggcgctca cgtcgaccca gcagtcgatg tcccagagtg cgagggctgc
     2041 gttcgaggcg agagcacccc agtgcagcca gtgatcagtc gacatccgct ctccgaggaa
     2101 ggcgtcgacc gcttgacgca ggctcggcgc cgcctctgcc ggagcgtcaa gaaccacgga
     2161 tacaagacct tcgagaagga ggtcactcgg ttccggaccg tccggcgtcg aacggctcgc
     2221 acgagccgcg acacagacgt cgaccagccc gccaccggga cctgccatgc gaccggccac
     2281 cagggcggcg gcccaggcgt cgagataggt gtctcgcgcg agccgggcat ctagcggctc
     2341 gagcctcgtg gcggcttcaa gcagctggac cggggcgcgg ctgccggcgg tggaggcccg
     2401 gctgatctct ccgcggagct gctccgcccg ggctcgttgc aggtcgtcga ccgcgtcggc
     2461 ctccgcctgc gctaacaggc ccaacccgac ctcgtacgcg cccgcgtgca ggttcgcgtg
     2521 tgcggccgcc agggccctgt ccgcacgccg ccccgggtcc gcggtcaacg ccaccgcacg
     2581 ctgcaggaac gcggccgcag ccgactgccc ggcccgggcc tgcgcacggt ccgccgagcg
     2641 ttcgaggtcg gcggcgacac cttcgtccgg gccggaggtg gaagccgcga ggtgccacac
     2701 cctccggtct ggatccctct gcgggtcggt cgcatcggcc agcgcccggt gcgcggcgac
     2761 gcgatcctct ggggacccgg cagcgtacgc ggcggaccgg acgagtgggt gccgaaagcg
     2821 cactgcggag cccacgtcga gcagctgctg agcctccgca ggaccgacaa cctcagggcc
     2881 gacctccagc gcccgcgccg cccgccagag cagggtcgca tccccggtcg gatcggccgc
     2941 agcgaccagc atcagcagct gagtgggtgc gggcagcgag cggaccctct gcaggtagtg
     3001 ctcctggaga tgcccggtca gggttgccgt gggtggaata gcgaagccac ctgccagctc
     3061 cgcttcgctg gtccccttga ccagctccag cagcgccagc gggtttccgc ccgtttcggc
     3121 gaccagccgg tcgcgaaccc gatcgtccaa gggtccgggc acttccgcgg ccagcagaac
     3181 ccgggcatcc tcgtcgtcga gcccttcgac caccaggtcc ggcaggccgg gaaacgggtg
     3241 ctcgtcgggc gtctcccgga cggcgagcaa gagcagcacg gactcggcgt ccagccgccg
     3301 acccacgacc ccgagcacct ggcgggtcgc ctcgtccagc cactgggcgt cgtcgaccac
     3361 gcacacgagc ggcctcttcg cggcggcctc ggccaacagg ccgaggaccg ccaggccaag
     3421 cacgaaccga tcggggacgt tgccctcggc cagcccgaag gccaccttca gggcccgggc
     3481 ctgtggctcc gggagcgtct cgagcccctc caaaaccggg ccgcacagct gatgcagcgc
     3541 ggcgaagggc agctccagct cggactcgac accagtgatg cgggtgatcc gacagtcggt
     3601 cgcctgacgg gcgacgtact gcagcagggt ggtcttgccg acgccggctt ggccacgaag
     3661 gacgagcacg gcgctccgcc cgccacgaac acggtccagt gcgtcgtcca ggcgctggcg
     3721 ctcgcgcgaa cgtccccaca gggtcaggcc cggggcggtc attccgcaac ggtagagcca
     3781 ccgccgggcc ggccaacacc gtcttccggt cccgtgtcac tgatcaccgt gagcaaggtt
     3841 ccagtgcgtc ccccgtcagg ccgtgggacg ggacacccgt gtcgccttct tctcggcccg
     3901 gctgatggcc cacgccgcgt tcaccaggcc gacatggctg aaggcctggg ggaagttccc
     3961 gaggagcgcg ccggattctg ggtcgacctc ctcggcgagg aggccgacgt cgttgacgta
     4021 cccgatggcg cgctcgaaca ccgaccaggc ccggtcaaca cggccagcca tcgccagggc
     4081 ctgcgccagc cagaaggtgc agagcaggaa ggtgccctcc ctgccgtcga gaccgtcgac
     4141 tccggtctcg ggtcggtacc ggtacaccag gccacgctca tcggtgagac gttcctcgat
     4201 tgcgtcgatc gtgcagagaa cgcgcggatc ggtggcggtc aggagcccga cgatgggcag
     4261 catcagggcg gacgcgtcga gggcatcggt accgacgtac tgcgtgaacg cgccagctga
     4321 ctcgctccac ccctccaggg tcaccatctg ctcgatgtcg gcgcgggcct gcttccagtg
     4381 cggcgcggac gaccggtccg cgatgacgtc ccccaatgcg atggcccggt ccaaggccac
     4441 ccagcacatg accttggagt gcaggaagtg ctgcggctcg ccgcgcacct cccagatgcc
     4501 gtggtcgcgc tctcgccagc acgcggtggc ggcctcggcg agcgcgcaaa ggaacccgca
     4561 cgtgtcgttg tcgaggtcgc gcagctgcct gcgcagctgg tgggcggcgc cgagcatctc
     4621 gccgtacacg tcgacctggt cctggtccca cgcgccgttg ccgacccgga ccgggctgct
     4681 tccacgcctc cggccaggtg gggaaggatg cgctcagtca ggtcgtgctc gccgccgacc
     4741 ccgaacatga tctgcaggcg ctggccggcg gcgccctcgg aggctgcgtt cgccatgaac
     4801 gcgaagaagt ccaccgcctc gtccgggcac gcggcaaccc acaacgcctc catggtgagg
     4861 ctcgcgtcgc ggacccagca gtaccggtag tcccagttgc gggcaccccc cgccacctcc
     4921 ggcagggagg tggtcggggc tgccacgatc gctccggacg gctggtacgt cagcgctttc
     4981 agcacccgtc cactggtgcg cacgaggtcc tgccacgggc cgcggtacga ctgatgcagg
     5041 accgttcacg accgccacgc cgccaccgtg cggttaaagc agcatgtcga cctcgccgtc
     5101 cgtacagaca cgcgcaggtg gctcgttcca ggtcgaccgg tgcagcgcga agcgcagggt
     5161 ctgaccggcc ctcagcaccc gtcgaccgcg tccggatccg gcggccaggc ccagctcgac
     5221 cggcgtggtg agcaccagcc gctccgcgcc gccgcgcgcg accacacccc ctcgaccggc
     5281 gacagggcgg gcacgacgag cccgtactcc gggcggggcc tgtaggagac ctcgatctcg
     5341 acctcacccg cgacgcaggc gagggtgcgc accaggatgt gcggggcatc gcggccgaga
     5401 gcgtgccctt cgttgccggg ccagagcgcc agggcgtcgg tgaggaccac cgtgcccggc
     5461 tgcgtccgca tcgtcgtctc gagcaccagc gtgtcgtcta ggtagcgccg cggagtagcg
     5521 aacccactgg tgggtcggat ggaccagtgg ccggcgtcgt cgtcgagcag gcgcgccatg
     5581 accgcggggc tgtcgaagcg cgggaacgtg agccactcga cggacccgga cgagtcgacc
     5641 aggccgctgg agtgacaatc cgacagcagg gcgtggtcgc cgatgggtgt actgctcatg
     5701 cggcctcacc tctccgggtc cggtagtgga gatggcgctg ggcgctgcgg gagtcctcgt
     5761 ttgcgagtgt ggcagagatc cagcccggcc accccgggcc ggcagtccca catccgtggg
     5821 ccggccacgt ggaccggcgt acgggacgca acccagttcg cccccagccc catccagccc
     5881 gcgccgaccc cagtcacccc ggccggcccc cagtccgagg acggcctcta cccggctgtc
     5941 tggacttgct accgacttcg aatgtgctct cgagaccgcc ggttcaggtg acgccggcgc
     6001 catctcttac gtggctccag gcgcgggttc ccggctggac ggtgtccacg tgggatcggg
     6061 ggcgcctatg cggcacggtg gtggtcgaca gaacggcagt cctacgaggc cgtccggcgg
     6121 ctgcttgagg cggggcggcg ggtcatcccg ccgccccagg cctgggtctt ctaggcggcg
     6181 cggtcggcgg ttgccgcgag ggcgcgcttc tcgatggcct tgacgctgtt gacgaacgct
     6241 ttcgccagta cgcgcttgcc gacggtgccg agcacgaggc cgaggaggcg gcccttgagg
     6301 ttcttgccct cgcggacgat gaccgcgtga atgtcggtcg tcgcgtccag ctcccgcgtc
     6361 aggcggtaga cgtacccgga ggcgccgccc cacacgttgg agtcggtagc ggtgatgacg
     6421 acacgtccag ggtcggacca gtcgtacgag agccgctccc agacgccgcc ggacccctcg
     6481 gtcacgtcgg cgtggtcggc ggccagctcg tggaccttca ggtagtcgtc ggcactgttc
     6541 tcgaacagct cggagcggcc cggcccgaag tcggtcaacc cggcgacgaa ctgttccggc
     6601 gtcagggtgg tggtctgcag aaggtggatg gtggacatgg ttctctcctt tgattcttca
     6661 gtcccggtag gggtctgtgg ggtgtgagtg gttaggggtg ggcgttactg cggtagggca
     6721 gtgccgtcct gttccgcgac catgtatgcc gcgtaccacg ccggccattc ctcgtcgcgg
     6781 acgccggtcc gctgctcgtg ctcgccgtgg gcggtcgcgg cgcggatcag ggcccgcatc
     6841 aggtcgttca ccgaggtgta cgacgtgtcc gtgctgtcga tgcggccggg gaggcgggtg
     6901 gtgacttcct gcagcagcca gccgttcccg tcggggtcgg tgaaggtggc gaacgagctg
     6961 tagctggcgt tgtcggccgc taggccgctg acccggtcgt cgctgccgtc gggctggaac
     7021 tgggcgccgg gggcctgtgg gtgaaatacg tcgctgacgt tgacaccgcg gtccgcgagc
     7081 tggccccggg cagcctgggc gtcggagacg accaggtaca ggccctgggc cgagccgggc
     7141 gccgctgtcg tgatcttggt tccgaactgc accgagctcg gcgacccggg tggggtgaac
     7201 tggacgacgc ggaagccgtt gtcgaaggcg aagtccgcgt caagcctcca gccgagcccc
     7261 gcgtagaagg ccttcgaccg gtccacgtcg gataccggga tcacgacggc ttcgagcttc
     7321 aggtcgacgg tgtaggcgct caggtcgctg gccaggtcgt ttgccatttc tgtgctggtg
     7381 cccatcgcgg gttcctcctt gctggttgtg ctgacaggaa gaagactggc gccggcgctg
     7441 cgcactcaca cccgtgagtc accctggttc accccccggg tcgccacggc caagccgctg
     7501 ggggggccgt cccaggtgtg cagcgagcca ggcaacatgg ctcggttcga gcacgacaat
     7561 cccggcgcgt gctcatgcac ccgtccaacc accacctcga gccttcattg gtgtcgcggc
     7621 cccgcgccgg ctctgctact ggcgttcccg agcgagtcgc cgcgaaagtg gacccatgaa
     7681 cacgacaccc tttcctgacg cccgcctccg caccgtcgac ggagtgcggg tcagatgcgc
     7741 cgacagcggc ggcaccgcag agccgacgat tgtgctgacc agcccgtggc cagagagcct
     7801 gtacgcgttc gcgcccatct gggagacgct cagggcccac gggcggctct tcgccctgga
     7861 cctgcccggg ttcggcggat ccgaacgacg cgaagacctg ctcgccccgc acgccatggg
     7921 cgggtttctc gcccgcctca tcgaccagac cggactcggc aggccgttca tcgtcgcgcc
     7981 cgacgtcggg accccggccg ccctgttcgc ggccgcggac caccccggac tgttcgccgg
     8041 cgtgatcgtc ggcgccggcg gcaccgcggt ccccctacag ctaggtgaac ccctggcctc
     8101 gtgggtgctc gaccccgacc tcgaaaaata tcgggccgtt gacccacacg cggtcgtcaa
     8161 cgccgcgatg gacgcgcacg ccgggaacgt tcccgacgac atccgcgccg actacctcag
     8221 gtcctatgag ggcgaccggt tcgtggagtc catgcgctac gtccgccgct accccgagga
     8281 gctccccctg cttgcccatc tacttccgca gatcgccgcc ccggtcacca tcatcgccgg
     8341 gcggcacgat cacgtcgtcc cgctcgccaa cgccgagttc cttcaccagc ggatccccaa
     8401 cagccgcctg gtcgtgctag agaccggcca cttcgcctgg gaggaatccc ccgccgagta
     8461 ctccacgacc atcctcgacg ccatcgcggg tcctcgcgcc tgacccgccg ctacgaccac
     8521 cgcacttgac actcacccca acgcgccctg ccgcccgcca tgtcgccaac cccgccattc
     8581 gctcgccgga ctcgtgaggg ttggcgatac tggcttgttg atgacttcac ccttcgtctg
     8641 gcagcgacgt accgcaggag tcctcatgtc caacaccgcc atcgccgact acgcgtttct
     8701 gtcggaccgt cactccgcgg ccctcatcga tcgctccggc tccgtagact ggctcagctt
     8761 tccgcgattc gactcgccct cggtgttcgg ccgcttactc ggggccgagg ctggtcactg
     8821 gagcgtcacc cccagcgggg agtggacgag cgcccggcac taccacgacc ggaccctggt
     8881 gctggagacc acattcacga cagcaaccgg tgaactagtg cttaccgacc tcctcgcgct
     8941 cggagacgac aaccgcggac atcgactcgg caccaacgtc ccgcacctgc tcgtccgacg
     9001 gctcgccggt acgtccggat cggtcgaagt gaacatctcg tacgcgcccc gaccggagta
     9061 cggactcgtg gttccgttgc tcggctatgt ggacggcggg gtcaccgccc ggggcggtgc
     9121 tgagtggctg gtcctcaccg tcccagccgc cctcgagctc gacgacggga cagcgcgggg
     9181 tcggctggcc gtccacgcgg gtcagaccgt gcatctggcc ctgcatcggt caaccctgga
     9241 gcaggcaccc gctcacgtct ggtcggatgc cgacctcgcg ggcaccgtcg acgccaccgt
     9301 ggcggactgg cagtcgtggt ccgaccttca ccaggcatac gaaggaccgt ggcacgatct
     9361 ggtgcacgcc agcggtcggg tgctgcaggg tttgtccttc cagcccagcg gtgcgatcgt
     9421 cgccgcggcg acgacgtcgc tgccggaagt cgttggcggt gaacggaact gggactaccg
     9481 ctactgctgg gtgcgggacg ccagcttcac catgcaggcg ctctgggtcg ccgcctgccc
     9541 ggacgaggcg agcaccttct tccagttcat gaccaccgcc gcagcctcct ccatcggtcc
     9601 ccactccggc ctgcagatca tgttcggcgt tggtggcgaa catgacctga ccgaacgaga
     9661 gctccaccac ctccccggct ggaagaacag ccagccggtc cgggtcggca acggcgcctg
     9721 gaaccaacac cagatcgacg tctatgggga gctgctcggc gcggccgccc agctctccga
     9781 gcacatcgac acccttggtg aggacacccg ccgattcctg accgcctgcg cggagaccgc
     9841 cgccggctca tggatggaca aggaccaggg catttgggag atccgcagcg agccacagca
     9901 cttcgtgtac tccaaagtga tgtgctgggc cgcactcgac cgagccattg cactgtccga
     9961 cctgctgcac gcatcggatc ggaccgaagg ctggaagcag cagcgcgatc aaattaaaga
    10021 gaccgtgatt cgcgaggcgt ggaacgacga agccggtgcg ttcacacagt acttcggatc
    10081 gaccgcgttg gacgccgcca acctcatgat gcccatcgtt ggcttcctgc ccgcgacgga
    10141 cccgaggatc ctcgccacga tcgatgccat cgaacagcgg ctgaccgaca gccgcgggct
    10201 ggtctaccgc taccagaccg gcgacggagc cgacggcctc gatggagacg agggcacctt
    10261 cttgctgtgt accttctggt tggcgcaggc actcgccgtc gctgatcggg ttgatcgagc
    10321 caccgcggta tttgagcggg ccgtcgcctg cgccaacgat ctcggcctgc tcgccgaaga
    10381 ggttgacccg gacactgggg agctactcgg caacttcccg caggccctca gccacatcgg
    10441 cttggtcaat gcggcatggg cgatctcgga agccgaacaa cgaggccgat cctgacccgg
    10501 gcccgagcat ctgaccgccg acctccccgg tgaggctagg tgggccagct tcccgcgacc
    10561 ggctgctccg cccttgacga cgtagagccc cctcgtgttg gcacatgcca gccggccggg
    10621 ggccgccatg agggatcacg ctgtctccgg aggagacggt tctctggtgc gatcgcaccc
    10681 gcccccccgc gccacaggct cccgtgacgg tgcacatgga catggaacag aagcccgctc
    10741 gatacgagcc tgcgatgaca ccagcccgcc aacaggcagg agccccgatg acctgctgag
    10801 cactcaccgg cggaggatgc gcgatcacgt cccttcgtcg gcagcagtga gcccgcggac
    10861 catcctgcaa gccgcccgga cagacaaggg ctcgcccggg gccgcccggc gggcctggac
    10921 aggcgagccc cggcgtggca gggcaagtcg gtgccgggga tagtgcgcaa cgagcgacca
    10981 acggcacggc gaccagggcg accagtgggt gcaccagggt ttctcgctgg ggcgatagcg
    11041 atcgccgtgg agcgaccgtg aggacatcga atcaaccgag gagctctgat caccatgtac
    11101 ctcaatgagc caagcaccca cggcaccgtc ctccgggtcc aagggtcagg ggacagcccg
    11161 gccctgcaag ttccggtcgc caagaggacc cgggtcgacg accgcgcccc gacgagtcgg
    11221 catgccgcgg ccggcaggtt ccgcctcggc cggcggaccg gcttctgggc tatcgccgcc
    11281 agcctggcct cgctgacggc gttctccacc gcacccagcc ccttgtacgg catctatgcc
    11341 caacaggacc acctgtcgtc gatcaccatc actgccgtct acgccgtata cgccgtcggc
    11401 gtcgtggcca gcctgctgtt ggtcggccac gtctcggact ggtacggacg ccgcccggtc
    11461 ctcatctcgg cgctgctcgt tgccctggtg gcggcgctga tcttctgcgc ctcgacctcg
    11521 cttcccgcgc tgttcaccgc acgggtgctg accggcgtag ccttgggcgc ggcgatcgcg
    11581 accgccagtg cctacctgac cgacctcgac cttggccctg gaggcagtgc gacacgccga
    11641 tcccaggtcg tctccagcgc ggccaacgtc ggcggcctgg cgaccggacc gctgctcgcg
    11701 ggactactgg cgcggtatgt accgggcacc ccccggctgc cgtacctgat cttcgcgata
    11761 ctgctagtcc tggctgtcat ggccaccgcg gccgcaccgg aaggacgtcc cgtaccgaaa
    11821 acgggtccgc gctaccaccc gcaacggctc gcggcaccgt ccgacgcacg cgctcagttc
    11881 aacgcggctc taatcggtgc gttgtcgatc ttcaccgtct acggcgtctt cgcaggtcta
    11941 gccggcgcgt tcctcgccgg acccctgcac cacccctcaa cggcgtgggc gggcgtcgca
    12001 gtgttcctca ccttcggtac cggaatcctc acacagatca ccaccaggtc ctggtccctg
    12061 cggcatctgc ttcgtctcgg cgtccccgcc ctactcctcg gtctcaccgc agtggtggcg
    12121 gcggcctggg tgactccccc aagcctgacg ctcttcttcg ccggcgcgct actcgtcgga
    12181 gccggcagcg gaaccatcag ccgcggcgcc ctcacgatcg tgatcacgac cgccgctgcc
    12241 aacaaccgag ccggagccgt ggcgtcctac ttcgtcgtcg gctacctggg cctgtcgctc
    12301 ccagtcctcg ccgccggcat cgccctgcag cacgtcacct tccaagtgac cctcctcgtc
    12361 ctgagcgtcg ccgcggcagc cggcatactc ctcgcgtccc gctacctgct acgcctcccc
    12421 accccgaaga ccggcgacac tcccgatacc gacacctgac cgagacatcg cggtcgccgg
    12481 gtcgaagggc tcctggagtc ccgcaacacc gtccggtagc ggcggctcgc aacccggggg
    12541 ggtgcaccac catcaggtga ccctcgcgca ccgcccgctc cccggcgagc agcgacgcat
    12601 actgcgcgtc gaggtagttc tggacgagtc cggcgagcat ccgaggtgcg cctcccgaag
    12661 attcggtgcg ctccccgccg ggcgtcagcg tagacgccgt acctcgcgcc gcgtcgtcga
    12721 accccgcgtg tcagcgccgt ctcgcccaag ccagagtcga gctcgcgggc tcgactctgg
    12781 ccgtgtccat cgccgacccg agccggacgc gggcgcgttc ggccgcagcc agcaggtcgt
    12841 cccggtcgtg ggcccgggct tgatgggccg ggtcctccgg gggatgccgc cgcaggatct
    12901 catcgagccg ctccgcgggt gtcacccacc tgccggtcgg gccgatactc atgtccagca
    12961 gggtgaccgt ctccagatcg gactcgagcg gaagcggtaa cgcgtccatt tcgcgccgca
    13021 accccctgat gcccgcctcc gtggcagcgc cgctgtggtg agcgaccagg gcgacgaccg
    13081 tggtcgagcc accctgaccg tccaggtaca ccgcgccgtc cagggggatg gaacccgaac
    13141 cgggccaggt ccggggcata gccgaggtcg tgcacccacg cggccgcggc caccgcctca
    13201 ctgatcgctc ccaaccgcca cagacgttcg gccagcgtcc caacgccctg gacgtgttgc
    13261 caccgcggcg aaaggtcgat gagatgacga accgcgagtg cccgggccgc gcgtagcagc
    13321 aactcaacct cccaaccggc cggccggccc tgcaaagcgc acgctacaca tccccaggtg
    13381 agggacgagg ctgaaccgcc cggacactcc gcgacaggcg acaggaggaa gacggagggc
    13441 ggcgagcccg gccggggtgg gcagaagcgc gtcgatctcc tcgggtcctg atggagttgg
    13501 gtgagacgtt cttcgacggt cacggccgcc ccgggcggcc cgcgcgcagc tggcgacagt
    13561 tcggaatcgc acggttcgag cctccggcct atgtgactca gcggctggcg accgtcggcc
    13621 ccggtcgtgt cactcaggcg tgtgggcggc gatggcgtgc ggaggcgagc agcggccggg
    13681 tgtcgtggtg gccggtggcc cgcagctcga gggtcagttc ctcgactcgg tcggtcagcg
    13741 cggtgagcgc cgggacgacc tgcggcgtcc ggtcgtaccg tccggcctcg gcaccggccc
    13801 accgttgccg cagctcgcgg acctcccgct ccaggcggag gagcgccgtc gcggtccgcg
    13861 cgtcgaag
//
LOCUS       DASYFY010000550         7383 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1196920, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000550 DASYFY010000000
VERSION     DASYFY010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 7383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7383
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1196920"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1160
                     /locus_tag="VGN19_11190"
     CDS             <1..1160
                     /locus_tag="VGN19_11190"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196497.1"
                     /translation="RPLPLPCGRRAAMIVPSAREPYRHAYTRTGSLATLRPFEDRDAD
                     AIERLLNGLSPTSAYRRFLGSSTNAATRYVSRLRSAVDTLAATVALEHGAVVGVASLH
                     PDREGAAEVAMAVADRDHGDGIGTLLLEDLVDRARHLGLTRLTATVLAENAEMLTVFR
                     DLGLIATFGRPDAGVMDVVLDLAPSDTYDRRVAEPTTLACAASVRRSVRPRSTSPVPD
                     HPGRSADVGAALAVWARTANLDARPGVLVVGDAASARDVREACADHGVLSANLTQQAE
                     QRLRLTVPSVVVDDNALMWTSVTSSDIRATLDTVVDCPTVGVVIVALDQPRSEADRTR
                     CRQLRDEGSRMEGPAVIVACQPGGSITGSLPTFSTADVCAAALSVARGIGM"
     gene            complement(1203..2204)
                     /locus_tag="VGN19_11195"
     CDS             complement(1203..2204)
                     /locus_tag="VGN19_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196498.1"
                     /translation="MSGTTRTRGPVPARGDRATTADDVARRPWSGGKREYDLLKELVI
                     ALVVVGALVVGLAAAFSSPDEQSLTLAGWAQQTPNDFVATAAAELAGTSASAGYGPPY
                     NSTPDAGQHLGPLNLQKAAGVRIPVDSANDFVITPLSQLPATPTLASALTQWKSAAAT
                     QQGKWAGAYADALAKVADGNPAKVASGEYGPVPALTASLLAMARSGTLQPVIQGESGF
                     YTTDYTRSTLFLADGSYLSDHADAQHLGGDQWGMMNETGSYPGQSWLWLYTFWYQIEP
                     FKSSPNADALVWTLMMVLSLGLLLVPFLPGVRSLPRWIPIHRYIWRDYYRKHATERR"
     gene            complement(2201..2875)
                     /locus_tag="VGN19_11200"
     CDS             complement(2201..2875)
                     /locus_tag="VGN19_11200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEV7196499.1"
                     /translation="MTTPAPAETTGHDTWTGRLRERVLQSMPPDQLLPDEQPEYVASW
                     IYVFGVATLAALVFIIGSGLLLTLEGPQWYHVSSVGHFVNSLHLWSVELFFVFMVVHL
                     WGKFWMAAWRGGRTMTWITGVVCFLASIGAAFTGYLVQTNFDSQWISSQAKDGLNAVG
                     IGAWFNVTNLGQMLLWHVGLLPLVLGFIVVWHVLLVRRHGVVPPIDATLESPVAEPLH
                     EEEPTS"
     gene            complement(2872..3039)
                     /locus_tag="VGN19_11205"
     CDS             complement(2872..3039)
                     /locus_tag="VGN19_11205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196500.1"
                     /translation="MTTTRVLTAGLDGPAHFLTWGPLQISLGNLVTIAIIVALFVLAI
                     VLPFPKPRGRR"
     gene            complement(3147..5759)
                     /gene="mgtA"
                     /locus_tag="VGN19_11210"
                     /pseudo
     CDS             complement(3147..5759)
                     /gene="mgtA"
                     /locus_tag="VGN19_11210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018762005.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0015444 - P-type magnesium transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
     gene            5911..6348
                     /locus_tag="VGN19_11215"
     CDS             5911..6348
                     /locus_tag="VGN19_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018779866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEV7196501.1"
                     /translation="MSQHGAALPATQEIETHEALALLRSVPVGRLAVVVDGAPDIFPV
                     NHVVDQGTVVFRTAAGTKLSAAHGRPVAFEVDGYDASKGEAWSVVVHGVGRVVYEAEE
                     AIEALKLPIFPWQSGAKPQIVRLIPSTITGRRFTVLGGVRDRS"
     gene            complement(6447..6701)
                     /locus_tag="VGN19_11220"
     CDS             complement(6447..6701)
                     /locus_tag="VGN19_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011777008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196502.1"
                     /translation="MMDWADAGQAGPMVVMVVLTILLVGGLVLAINALYPSRGQGDPG
                     PSAGVERPRAAAEEELELRYARGEIDAETLARQRAVLRQR"
     gene            complement(6808..7242)
                     /locus_tag="VGN19_11225"
     CDS             complement(6808..7242)
                     /locus_tag="VGN19_11225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196503.1"
                     /translation="MISPSASPPRSGRPQPLSLPEVVAGIVNDGSAAVVAEAAVRLAR
                     ELGGRVRFVQVLPGGLDDHERADAEAITFSTALRALRGRPRVQATFESPSGDPRELLV
                     NRSRMAMALVVGQDKSDVGARHDVAAYCEAISGCRVVVVPVT"
BASE COUNT         1242 a         2403 c         2595 g         1143 t
ORIGIN      
        1 ctcgaccact cccgctgccc tgtggccgtc gtgccgcgat gatcgtgcca tcagcacgcg
       61 agccctaccg tcacgcgtac accaggaccg ggtcgctcgc gacgttacga cccttcgagg
      121 atcgcgatgc cgacgccatc gaaagactcc tgaacggcct gtcaccaacg tcggcctatc
      181 gcaggttcct gggaagctcg acgaacgcgg cgacccgtta tgtctcacgc ctccgctccg
      241 ccgttgacac cctggctgcg acggttgcgc tcgaacacgg cgcggtcgtc ggtgtcgcct
      301 cactgcaccc cgaccgcgaa ggggcagcag aggtggccat ggcggtcgcc gaccgggacc
      361 acggcgacgg catcggaacc ctgctgctgg aagacctcgt ggaccgggcc aggcatctgg
      421 gactcacccg cttgaccgcc accgtgctcg ccgagaacgc cgagatgctg acggtgttcc
      481 gcgacctcgg cctcatcgcg acctttggtc gacccgacgc aggggtcatg gacgtcgtcc
      541 tcgacctcgc accgtccgac acctacgacc gccgagtggc cgagccgacg accctggcat
      601 gcgcggcttc tgtccgccgg tcggtgcgcc cccgctcgac atcccctgtt cctgaccacc
      661 ctgggcgcag tgcagatgtt ggcgccgcgc tggccgtctg ggcgcgcaca gcgaacttgg
      721 acgcgcgtcc tggggtgctg gtggtgggcg acgcagccag cgcacgggac gtgcgtgagg
      781 cctgtgctga ccatggcgtc ctgtccgcga acctcaccca gcaggcggaa cagcgactgc
      841 ggctcaccgt gccatcggtg gtggtcgacg acaacgccct catgtggacc tcggtgacga
      901 gcagcgacat cagagccacg ctggacacgg tcgtggactg tcccacggtg ggcgtcgtca
      961 tcgtggcgtt ggaccaaccc cgcagcgagg cggaccgaac ccgctgccgt caactccggg
     1021 acgaggggag ccggatggag gggccggccg tcattgtcgc ctgccaaccg gggggcagca
     1081 tcaccggctc gctgcccacc ttctcgaccg ccgacgtttg tgctgcggcc ctctcggtgg
     1141 cccgtgggat agggatgtag ctcctagagg ggtagctcgt gggctaggaa gctgaccaag
     1201 gttcagcgcc gctcagtcgc gtgcttccgg tagtagtcgc gccagatgta gcgatggatg
     1261 gggatccagc gcggtagcga acggacgccg ggcaggaagg gcaccagcag aagtcccagg
     1321 ctgaggacca tcatcagtgt ccacacgagg gcatccgcgt tcggcgacga cttgaagggt
     1381 tcgatctggt accagaaggt gtagagccac agccaggact ggccggggta gctgcccgtc
     1441 tcgttcatca ttccccactg gtcgccaccg aggtgctggg cgtctgcgtg gtcggaaagg
     1501 tagctgccgt cggcgaggaa cagggtcgac cgcgtgtagt cagtggtgta gaagccggac
     1561 tctccctgga tgaccggctg gagtgtcccg gagcgggcca tggcgagcag actggccgtc
     1621 agcgcgggca ctggcccgta ttcgccggag gccaccttgg cggggttgcc gtcagcaacc
     1681 ttggcgagcg catcggcata cgcccctgcc catttgccct gctgagtcgc ggccgcgctc
     1741 ttccactggg tgagcgcgct ggccagggtt ggggtggcag gcagctgtga caacggcgtg
     1801 atgacgaagt cgttggcgga gtccaccggg atccgcaccc cggcagcctt ttgcaggttg
     1861 agcggcccga ggtgttgccc ggcgtccgga gtggagttgt agggcggccc atagcccgcg
     1921 ctggcgctgg tgccggcgag ctcggcggct gctgtggcga cgaagtcgtt gggtgtctgc
     1981 tgggcccatc cggcgagggt caggctctgc tcgtccgggg agctgaacgc ggcagcgagg
     2041 ccgacgacca gggcgcccac cacaaccagc gcgatgacga gctctttgag caggtcgtac
     2101 tcccgcttgc cgcccgacca cgggcgccga gcgacgtcgt ctgcggtggt ggcccgatcc
     2161 ccccgcgccg gaaccgggcc gcgagtccgg gttgtcccgc tcatgacgtg ggctcctctt
     2221 cgtgcagtgg ctccgccacg ggtgactcga gggtggcgtc gatcggcgga acgacgccgt
     2281 gtcggcgcac gaggagcacg tgccaaacga cgatgaagcc gaggaccagg gggagcagcc
     2341 cgacatgcca gagcagcatc tgtccgaggt tcgtgacgtt gaaccacgcg ccgatgccca
     2401 ccgcgttgag gccgtccttg gcctgcgatg agatccattg ggagtcgaag ttggtctgca
     2461 ccaggtagcc ggtgaacgcg gcgccgatcg aggccaggaa acacaccact ccggtgatcc
     2521 aggtcatggt tcggccccca cgccaggcgg ccatccagaa cttgccccac aggtgcacga
     2581 ccatgaagac gaagaagagc tcgacgctcc acaggtgcag gctgttgacg aagtgcccga
     2641 ccgacgacac gtggtaccac tgcgggcctt ccagcgtcag cagcaggccg ctgccgatga
     2701 tgaagaccag cgcggccagt gtggcgacac cgaagacata gatccaggag gctacgtact
     2761 cgggttgctc gtcaggcaag agctggtcgg ggggcatgct ttgcagcacg cgctcgcgaa
     2821 gccgaccggt ccacgtgtcg tggccggtgg tctcggccgg tgcgggcgtg gtcatcgccg
     2881 accccggggc ttcgggaacg gcagcacgat ggccaggacg aacagggcga cgatgatcgc
     2941 gatcgtgacc aggttcccca gggagatctg cagcggaccc caggtgagga aatgcgcggg
     3001 cccgtcgagc ccggcggtca ggactctggt ggtagtcatg gacagcgctc ccgttctagc
     3061 cgatggtgga cgccgctcac gctaggccgg gctggagccg gtcgacaggg cccaaggtcc
     3121 ccctttgtgg gcgggccgat ctgtcaatga cgctgctggc ggcgggtgga cgggcgcgcc
     3181 tgcccgacga cgctgaaccg agccgcgcgc cggtggacgc gatgcgggtg cccgcgccga
     3241 cgtgggcgag gcatcacggt cgtgggctca tctctgaaga agaccttctt gccgagctcg
     3301 acgaggacga ggtaggccag gaccatgccc gccagggcgg catagaacac ggctggcggc
     3361 ctggcgaacc caagcagatg ggccaagggc gtcagtggca gaacgcccgc tgcggccacg
     3421 acggccaggg ttgcgagggt caagggggcg ctgggcctgc tgcgcaggaa ggggatccgc
     3481 cgggtgcgaa tcgcaaagat gaccagcgtc tgtgttgcta gggactcggc gaaccacccc
     3541 gaccggaaaa ggtccgctcc ggcgtgcagc gggccgagca tgatgccgaa cgtcatgaag
     3601 tcgaacaggg agctgagcgg gccgaagaac aacatgaagc gtcggatgaa ggagatgtcc
     3661 cagtgggagg gccggcgcag ctgctcctcg tcgacattgt cggtggggat ggtcagctgg
     3721 ccgacgtcgt agagcacgtt gttgagcagg atctgggagg gaagcatggg aagaaacggc
     3781 aggatgcctg acgctgcagc tgcgctgaac atgttgccga agttgctgga cgtgcccatg
     3841 agcacgtact tgatggtgtt ggcgaagatg cgccgcccct cggcgacacc atcagcaagg
     3901 acgttcaggc tcttctcgag cagaaggatg tcggccgcgt ccttggcgac gtcggtcgca
     3961 gtgtcgacgg agatgccgat atcggcttgg tgcaaggcga gcgcgtcatt gaccccgtcg
     4021 ccgaggaacc ccacggcgtg gccgcggtgc cgcagggcct tgatgatgcg cgccttctgt
     4081 tcgggggaga cccgtgcgaa gaggctgcat ccagcgaccc cggtggtgag ctcctcgtcg
     4141 gagagcgcat cgatcgccac gccgttcatg ggcttgccca cgtccagacc caggtcctgg
     4201 cacagccgaa ccgccacctc gaggctgtca cccgtggcaa ctttgacctg cacccctagc
     4261 ccggcaagtc gctgcaggga ctgggcggcg tccgccttcg ggggatcctg gaagacgaga
     4321 aaaccgacca gagtcaggcc cttctcgtca gcgggcgtcg ggaccgtgat gggcccgccc
     4381 ggccgccggg cgacggcgat gaccctgctg ccctgctcgt acaacgccga aagggtctgc
     4441 tccaccgtgg aggggacgtc gatgcacgcg gggaggacgg actcggccgc ccccttgacg
     4501 acaagcaggt gagacccgtc cgccgtcatc gcgacgactg aggtcatgcg tcgcacgtgg
     4561 tcgaagggaa gctcgccgag ccggacgtag ccagccaccg cgtcggcagg catcgcccgc
     4621 cacagggcag tgtccaagag gttgccgccg acgacggtcc cacccgactc ctcgatatcg
     4681 ctggcaagaa ggccaaggac cgccgcctgg gggcacggtg ccccggtcgc gtcgaccgcc
     4741 tcgaggaagg tgagcgctcc ggcggtcagg gttccggtct tgtcggtgac gagaacgtcc
     4801 atgtcgccga ggtcctcgat gcatacgagg cgcttgacga gcacctttcg ccgtgcgagc
     4861 tgccgcgaac cggccgcgag gctggtgctg acgatcgccg gcagcagctg tggggtgatt
     4921 ccgacagcga tcgctagtga gaacaggacg gcgtcgatca ccgggcggcg cagcaggatg
     4981 ttggtcacca agatcatcac cgtcaggacg acggcgacct tcaggagcag gcctgagaac
     5041 tggcgcaacc cggcctggaa gtcagtctct ggctggcgct cgccgagccc ggccgcgatc
     5101 ctgccgaact ccgtcctcgt gccggtggcc acgaccaacc ctgtgcccgc acccgcatgt
     5161 acgacggtgc ccatccatgc catggaagtc atctcggcca atgccgcgtc ttcgcccgct
     5221 ggggcgacgg ccttctcaac ggggagggac tcgccggtca ggaccgcttc gtcgcattcg
     5281 aggttggtcg cctccagcac gcgcaggtcg gcagggacga cgcccccgag gctgaggtgg
     5341 accacgtcac cggggacgag ctcgacgacg tcgactttgc aaggccggcc ttgtctggtg
     5401 acgaccgcgg tgtggcgaat cgtcgagtgc agggcctggc tggcccgttc agcgcggtac
     5461 tcgttgccga acccgaggcc gacgcttgcg aggaggatca cgccgatgat gaccgcgttg
     5521 atctggtcgc cgacggcaaa ggacactccg gctgtggcga agagcagcag cagaaggggg
     5581 ctgcgcagct gccgggcgag cacgggccag acacgggcgc catggtcgcg cagggcattc
     5641 ggtccgaacg ccgccagtcg ggtcgcggct tcctggtcag tcaggccgag tgacgcatcg
     5701 ctggtctggg cggcaacgac ggcaacggcc tcggaacgcg cagccgtttg cgtgtccacc
     5761 ccacccctct catccgcgtt ggagtggcca gtctctgcga tcgtgaccga aggaggaagg
     5821 ggcacaacgt cccgatctga cagcgacgcc agcgactggt cgggaccttc gcccctatcg
     5881 gttctgttcg cccgggcttg cactgagggc atgagtcagc acggcgcggc actccccgca
     5941 acgcaggaga ttgagaccca tgaggcgctc gcattgctgc gctcggtccc cgtcggcaga
     6001 ctggcggtcg tcgttgacgg cgcgccggac atctttcctg tcaaccacgt ggtggaccaa
     6061 ggaacggtcg tgttccgcac cgctgctgga accaagctgt cggctgctca tgggcgaccg
     6121 gtggccttcg aggttgacgg ctacgacgcg tccaagggcg aggcgtggag cgttgtggtt
     6181 cacggcgttg gccgggtggt gtacgaagca gaggaagcca tcgaggccct gaagttgccc
     6241 atcttcccgt ggcagagcgg cgccaagccc cagatcgtcc gactgatccc gagcaccatt
     6301 acggggcgcc gcttcacggt ccttggcggc gttcgcgacc gtagctaggc gaacccccta
     6361 ggcaagagac cccttcccga acttaggcaa gagacccctt cccgaacgta gggggagctt
     6421 cgctgaggaa gcgttatcgg ggagcgttat cgctggcgca gcacggctcg ctgccgggca
     6481 agagtctcgg catcaatctc gccgcgcgcg taccgcagct caagctcctc ctctgccgca
     6541 gcgcggggcc gctcaacccc agcagagggt ccgggatcgc cttgacctct ggagggatac
     6601 agggcgttga tcgccaacac caggccgccc accagcagga tcgtcaggac caccatgacc
     6661 accatggggc ctgcttggcc cgcgtccgcc cagtccatca tcagactcac ctcgtcgact
     6721 tgttcgtgcc tccagcctcg cgctcgacgc cgggatgtag ttcgtgccaa aggtcccagt
     6781 agctgcgcca cggggagccg ccccgagtca ggtcactggg acaacgacga cccggcatcc
     6841 ggagatggcc tcgcagtagg cggcgacgtc gtgccgggcg ccgacgtcgg acttgtcctg
     6901 cccgacgacg agggccatgg ccatccgact gcggttgacc agcagctcgc gcggatcgcc
     6961 tgaaggggac tcaaacgtgg cctggaccct cggacggccg cggagggcgc gcagagccgt
     7021 gctgaaggtg atggcctcag catccgccct ctcgtggtcg tccagcccgc ccggcagcac
     7081 ctggacgaaa cgcacccggc cgccgagctc tcgggccagc cggacggcgg cctcggcaac
     7141 gacggcagcc gagccgtcgt tgacgattcc agccaccacc tcaggcagcg agaggggctg
     7201 agggcggccg gatcggggcg gggacgcaga tggtgagatc accctttgag catggacgtc
     7261 tgggcgatgc cgcggttggg ccaatagtcc cggatgtgca tgcctgggcc gccgtgcgct
     7321 cggccttgcc gggcatcgcg atacaggcgg gcctatcctc acagggtggg tgcggatccg
     7381 aag
//
LOCUS       DASYFY010000551         1892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1092724, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000551 DASYFY010000000
VERSION     DASYFY010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1092724"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VGN19_11230"
     CDS             complement(<1..235)
                     /locus_tag="VGN19_11230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196504.1"
                     /translation="MSIGQGLWSSSKGRLTIGTFCPGRLVEIRAALALKNNDHIEEAK
                     MLQQDLTADVRAERTAFADVPDVVVADDGGWGSR"
     gene            303..1196
                     /locus_tag="VGN19_11235"
     CDS             303..1196
                     /locus_tag="VGN19_11235"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196505.1"
                     /translation="MSWTSGPAPVVVGVDGSPSSDRAVDWATDEAARRNLPLQLFNAW
                     NVDFSAEWGASLLPAIEQESADVLRAAADRARAISSSVRITRRQERSGPSAALVTASL
                     TADTVVLGHRGKGAVERLLTGSTSMQVAAHAHCPVLVVPEASVSVPETGHVVVGVDGS
                     PASLQAVGYAVVQASLRGSDLTVVHAWDVGLVQGTLALNAPIEVWEGFDAERVALASE
                     AAAGWAEKYPDVTVHTRVVHGRPADGLLHASSNAELLVVGSRGRGGFLGLLLGSVSRT
                     VLHLARCPVAVVHANRDQRAW"
     gene            complement(1303..1797)
                     /locus_tag="VGN19_11240"
     CDS             complement(1303..1797)
                     /locus_tag="VGN19_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015937080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEV7196506.1"
                     /translation="MNTQLTLDTEVLSTNECWGLLRDSVVGRLAVTVVGSPDIFPVNP
                     IVDHGSIVFRTSAGTKLAATKGKDVAFEVDGYDTETARAWSVVVKGQAHEILEVEEIL
                     RALRLPLYPWQPGRKPRFVRIVPASITGRRFVVEGGFTSARDRQETDQDVTRDAAHGA
                     PRTG"
BASE COUNT          288 a          658 c          636 g          310 t
ORIGIN      
        1 ggcggctgcc ccatcccccg tcgtcggcga ccacgacatc aggaacgtcg gcgaacgctg
       61 tccgctcggc ccggacgtca gcggtgaggt cctgttgcag catcttggcc tcctcgatgt
      121 ggtcgttgtt cttcagggcc aacgctgccc ggatctcgac caggcgccca gggcagaagg
      181 tcccgatggt gaggcgacct ttcgaggagg accaaaggcc ctgtccgatg gacacagcag
      241 acggcacgct ggactcaccc ccccgcacgg ccgccaggcc atcgagccaa ggaggcgtga
      301 ccatgagctg gacatcaggt ccggcgcccg ttgtcgtcgg cgtcgacggt tccccgtcga
      361 gcgaccgggc ggtcgactgg gcgactgacg aggcagcccg caggaacctg cccctgcagc
      421 tgttcaacgc gtggaatgtg gacttctcgg ccgagtgggg cgcatcgctc ctgccggcca
      481 ttgagcagga gtccgccgat gtcttgcgcg ccgcagcgga cagggcccgc gccatctcat
      541 cgagtgtccg tatcacgcga cgtcaggagc gcagcggacc ctccgcagcc ctggtcaccg
      601 cgtcactgac ggccgacacc gtggtcctcg gtcaccgtgg caaaggcgcg gttgagcgcc
      661 tactgaccgg gtcgacctcg atgcaggtgg cggcccacgc tcactgcccg gtgctcgtcg
      721 tccccgaggc ctcggtcagt gtccccgaaa ccggacatgt tgtcgtcggc gtcgacggct
      781 ccccggcgtc actgcaggcg gtcgggtacg cagtcgtcca agcctccctc cgaggcagcg
      841 acctgaccgt cgtgcacgcc tgggacgtcg ggctggtcca gggcacgctg gccctcaacg
      901 cgccgatcga ggtgtgggag gggttcgatg ccgagcgagt agcccttgcc tccgaagccg
      961 ccgccggctg ggccgaaaag taccccgacg tcacggtcca cacgcgagtg gttcatggtc
     1021 gtcccgccga cggcctcctc cacgcatcct cgaacgccga gctcctcgtg gtcggtagcc
     1081 gcggccgcgg tggcttcctc gggctgttgc tggggtccgt cagccgcacc gttctgcatc
     1141 tcgcccgctg cccggtcgcc gtggtccacg ccaaccgcga ccagcgcgcc tggtagcacg
     1201 tctcctcggg agggcgatag tggcgatatc actgcgccaa ggccggcagc accgagagca
     1261 ggagaagatc ggccacgcag acgtgatcgg gccgtatggc ggtcagccgg tccgtggggc
     1321 gccatgagca gcgtccctcg tgacgtcctg atcggtttcc tggcggtcgc gagcggacgt
     1381 gaaaccgccc tcgacgacga atcgtcggcc agtgatgctc gcgggcacga tccgaacgaa
     1441 ccgtggtttg cggccgggct gccaggggta cagcgggagg cgcagggccc ggaggatctc
     1501 ttcgacctcc aagatctcgt gggcctgccc cttgaccacg acgctccacg ctcgcgcggt
     1561 ctcggtgtcg tagccgtcca cctcgaaggc gacatccttg cccttcgttg ccgccaactt
     1621 ggtcccggcg gacgtgcgga acacgatgga cccgtggtcc acgatggggt tcaccggaaa
     1681 gatgtcagga ctcccgacca cggtgacggc caggcgtccg accacgctgt cgcgcaacag
     1741 cccccagcat tcgttcgtgg acaggacctc ggtgtcgagg gtcagttggg tgttcatgaa
     1801 acgatggtcc tcaccgttga ccgcctcgga cagggtctaa ggtcccgtca ggttcgacgg
     1861 ccccgctcca cgccggattc gtgcgtggca gc
//
LOCUS       DASYFY010000552         4272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_92853, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000552 DASYFY010000000
VERSION     DASYFY010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4272
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92853"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VGN19_11245"
     CDS             <1..563
                     /locus_tag="VGN19_11245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196507.1"
                     /translation="GHDGLHQGLVQDFDVMIVDRGLPAIEGVDLVSRLRARGIGAPIL
                     LLTARNTVADRVEGLDAGAQDYLGKPFDVEELLARLRALLRPLSALAEELPLSRGRLV
                     VGENRVTGGTDAMDVTLSPRETELLAMMARRPTRIFTREELLESIFQGAGTPGAVDTY
                     VHYLRRKLGTGVVDTIHGVGYRLGAS"
     gene            560..1336
                     /locus_tag="VGN19_11250"
     CDS             560..1336
                     /locus_tag="VGN19_11250"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEV7196508.1"
                     /translation="MSGTPDATLLRRAAWSVSVQTAAAVAAVVVVVLLGVVLLFDHQQ
                     AIEIRDLVRQAAVTADDVNDPPQGVWLVRISGGSRTASPGSPAPVVGSSQLVQARPGM
                     LSVDIGPSHWSAWVADRGGDRFVAVYDQSRHRDEEHRLLVATTLAGLLGVLLAGTIGL
                     LVGRRAIQPLGRALELQRRFVADASHELRTPLAVLNIRAQMIRRHLPADASAAQRTEV
                     DQLVGDTASLGEVGLRPAPGSPARARGPSRPNGRPCTPCA"
     gene            1350..1838
                     /locus_tag="VGN19_11255"
     CDS             1350..1838
                     /locus_tag="VGN19_11255"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196509.1"
                     /translation="MLPYAEAAGVRLHLVGTQDAAESDFVVTGAPTALRRALTALVDN
                     AIAHSQPGDPVRVRLRREPTDGGPSTSVHTVCLAVEDDGDGLDAGDASALTQRFARGV
                     AASTGGGRRFGLGLALVDEVVRAHHGQLEITGALGLGSTFTLRLPASRRGAGESTSAA
                     LP"
     gene            complement(1853..2998)
                     /locus_tag="VGN19_11260"
     CDS             complement(1853..2998)
                     /locus_tag="VGN19_11260"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEV7196510.1"
                     /translation="MTGLVLVINAGSSSLRYAVLEPQSGRAVFEGYQHDIGHGGPPDH
                     EAAVHLALDELRNDGQLGDTASLVAVGHRVVHGGSRFHDPVLIDDAVLSQIEALTPLA
                     PLHNPGSLAGIAAARAAFPNTPQVAVFDTAFHHTLPAPAHTYAVPRVWRDDYAVRRYG
                     FHGISFAFVARRAAQLLDKPLTDANLILLHLGNGASVCAVRDGRSVDTSMGLSPLEGL
                     VMGTRSGDVDPCLGPYLSRVAALDSEHYEDALNHDSGLMGLSGTSDMKELEKRRAGGD
                     VDAALAFDVMAYRLRKYIGAYAVVLGRVDAIAFTGGVGEHSDALRAAVLDDLAILGVE
                     LDAMINRQPTSPERCITTPMSAIPAYVIPTNEELEIARSCARVLASA"
     gene            complement(2995..>4272)
                     /locus_tag="VGN19_11265"
     CDS             complement(2995..>4272)
                     /locus_tag="VGN19_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014921654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoketolase family protein"
                     /protein_id="HEV7196511.1"
                     /translation="KDLPPLDLGTYEVDVPTPGQVWVENTLPAGELMRDLYAATARPD
                     GGGTFRLFSPDETASNRLQSVFEVTDRCFMGPLLPTDQSLGPDGRVMEVLSEHLCQGW
                     LEGYVLSGRHGVFATYEAFAMVSASMAIQHVKWLQHAQDLPWRAPVSSLNVLLTSTCW
                     RNDHNGFSHQGPGLIDSLLPLAPGVVRVWLPPDANTTLSITDHCLRSTDHVNLIVVDK
                     QKHLQYLTLEQAHRHCADGAGSWDWASTCGPDETPDVVLACAGDVPTQEALAAVELLH
                     EHVPELKVRFVNVVDLMALLPENDHPHGFADSRFDDLFTGDRHVVFAFHGYPRAVHQL
                     IHGRSNPGRFHVRGFNEQGTTTTPFDMVVLNRMSRFHLAKEALRRSHRRVTGWEDLTR
                     LCDDRLAEHGVYIRENLADLPEVANWTWRGLDR"
BASE COUNT          620 a         1409 c         1558 g          685 t
ORIGIN      
        1 acggtcacga cggcctgcat cagggtctgg tccaggattt cgacgtgatg atcgtggatc
       61 gcggcctacc cgccatcgaa ggcgtggacc tggtatcccg gttgcgggcc cggggcattg
      121 gtgcgccgat ccttctgctg acggctcgca acaccgtcgc ggaccgggtg gagggtctgg
      181 acgccggggc tcaggactac ctgggcaagc cgttcgacgt cgaagagctc ctggcgcggc
      241 tgcgggcgct ccttcgaccg ctgtccgcac tggctgagga acttcccctc agccgcggtc
      301 ggctcgtggt gggggagaac cgggtgaccg gcggcacgga cgcgatggac gtcaccctgt
      361 caccgcgcga gactgagctg ttggccatga tggctcgccg ccccacgcgc atcttcaccc
      421 gggaggagct gctcgagagc atcttccaag gggcagggac cccgggcgcg gtcgacacct
      481 acgtgcacta cctgcgccgc aagctcggca cgggcgtcgt cgacacgatc catggcgtcg
      541 gctaccggct cggcgcgtca tgagcggcac gcccgacgcc acgctcctac ggcgcgccgc
      601 gtggtcggtg tcagtgcaga ccgcggccgc ggtcgccgcc gtggtcgtgg tggtcctgct
      661 cggggtggtg ctgctgttcg accaccagca ggcgatcgag atcagggact tggtgcggca
      721 ggccgcggtc accgccgacg acgtcaacga cccgccgcag ggagtgtggc tggtgcgcat
      781 cagcggcggt tcacggacgg ccagccctgg ttcgccagcg ccggtggtcg gctcgtccca
      841 gctggtccag gcccggcctg gaatgctgtc cgttgacatc gggccgtcgc actggagcgc
      901 ctgggtggcc gaccggggcg gcgaccgctt cgtcgccgtg tacgaccagt cacgccaccg
      961 ggacgaagag catcggctcc tggtcgccac cacgctggcc gggcttctcg gcgtcctgct
     1021 tgcagggacc atcgggctac tcgtggggcg gcgggccatc cagccgctgg ggcgggcact
     1081 ggagcttcaa cgacgtttcg tcgccgacgc cagtcacgag ctccgcaccc cgctggctgt
     1141 gctcaacatc cgagcgcaga tgatccggcg tcatctaccg gcggacgcct ccgccgcgca
     1201 gaggaccgag gtcgaccagc ttgtcgggga caccgcctcg ttgggagagg tgggtctccg
     1261 acctgctcct ggcagcccag ctcgagcacg cggaccttcc cgcccgaacg gtcgaccttg
     1321 cacgccttgc gcgtgaggtc gtcgcctcca tgcttccgta tgccgaggcc gccggggtgc
     1381 gccttcacct ggtcggaacg caggacgccg cggagagcga tttcgtggtc accggggcgc
     1441 ccactgccct gcggcgggcg ttgacggctt tggtggacaa cgcgatcgcc cactcgcagc
     1501 ccggcgaccc ggtgcgggtt cggctgcgcc gcgagccgac ggacggcgga cccagcacgt
     1561 cggtgcacac cgtctgcctc gcggtggagg acgacggcga cgggctggat gcgggcgatg
     1621 cgagcgcgct cacccagcgg ttcgcgcgcg gagtggcggc gtcgaccggt ggcggccgac
     1681 ggttcgggct ggggttggcg ctcgtggatg aggtggtccg ggcgcaccat gggcagctgg
     1741 agatcaccgg tgcgctcgga ctgggttcga cgttcactct ccgcctgccc gcctcacgac
     1801 gcggcgctgg agagtcgacg tcggcggctc tgccctaacg tgccctgaag ggtcacgccg
     1861 aggccagaac ccgcgcgcag gagcgtgcaa tctccagctc ctcgttggtg ggaatcacgt
     1921 atgccggtat cgcgctcatg ggcgtggtga tgcaccgctc tggcgaggtc ggctgacggt
     1981 tgatcatcgc gtcgagctcg actccgagaa ttgccaggtc gtccaggacc gccgcccgca
     2041 gggcgtcgct gtgctccccg accccaccag tgaaggcgat ggcgtcgacc cggccgagga
     2101 cgacggcata cgccccgatg tacttgcgca gccggtaggc catgacgtcg aacgcgaggg
     2161 cagcgtccac atcgcccccg gctcgtcgct tctcgagctc tttcatgtca gacgtccctg
     2221 acagtcccat caggccgctg tcgtggttga gggcatcctc gtagtgctcg ctgtccagtg
     2281 cggcgacgcg cgagaggtac ggaccgaggc aagggtcgac gtctccggac cgggtgccca
     2341 tgaccagccc ctccaggggt gacagtccca tggaggtgtc gacactgcga ccgtcccgca
     2401 ccgcgcacac gcttgccccg ttccccaggt gcaacaggat caggttggcg tcggttagcg
     2461 gcttgtcgag cagctgcgcg gcgcggcgcg cgacgaaggc gaatgagatc ccgtggaagc
     2521 cgtagcggcg gacggcgtag tcgtcgcgcc agacgcgcgg cacggcgtag gtgtgggcgg
     2581 gtgccgggag cgtgtggtgg aaggcggtat cgaagactgc gacctgcggg gtgtttggga
     2641 acgcggcgcg cgccgcggca atgccggcaa ggctgccagg gttgtgcagt ggggcgagcg
     2701 gggtgagcgc ctcgatctgc gagaggacgg cgtcgtcgat cagcactggg tcgtggaagc
     2761 gggacccgcc gtgtacgacc cggtgcccca ctgccacgag ggacgcggtg tccccgagct
     2821 gcccgtcgtt gcgtagctcg tcgagcgcca ggtgcactgc ggcctcgtgg tcgggtgggc
     2881 cgccgtgtcc gatgtcgtgc tggtacccct cgaagacggc tcgccccgac tggggttcca
     2941 ggaccgcgta tcgcagcgat gacgaacctg cattgatcac caggacaagc ccggtcaccg
     3001 gtccagtccc cgccacgtcc agttcgctac ctctggcagg tccgccaggt tctcccgaat
     3061 gtagacgccg tgctcggcga gccggtcgtc gcacagccgg gtcagatcct cccacccggt
     3121 cacccggcgg tgggagcggc ggagcgcctc cttggcgagg tggaagcggc tcatccggtt
     3181 gagcaccacc atgtcgaacg gcgtggtcgt ggtgccctgc tcgttgaacc cgcgcacatg
     3241 gaagcgtccg gggttgctgc ggccgtggat gagctggtga accgcgcgcg ggtagccgtg
     3301 gaacgcgaac acgacgtgcc ggtcgccggt gaacaggtcg tcgaaccggc tgtcagcgaa
     3361 gccgtgcggg tggtcgttct cggggagcag agccatcagg tcgacgacgt tgacgaacct
     3421 gaccttgagc tctggcacgt gctcgtgcaa cagctcgacg gcggcgaggg cctcctgggt
     3481 cggcacgtct ccggcacagg ccaggaccac gtccggcgtc tcgtccgggc cgcacgtact
     3541 ggcccagtcc cagctgcccg cgccatcggc gcagtgccgg tgcgcctgct cgagggtgag
     3601 gtactgcagg tgcttctgct tgtcgacgac gatcaggttg acgtggtcgg tgctgcgcag
     3661 gcagtggtcg gtgatcgaca gggtggtgtt ggcgtccggc gggagccaca ccctcaccac
     3721 gcccggcgcc agggggagca gcgagtcgat gagaccgggc ccttggtggg agaagccgtt
     3781 gtggtcgttg cgccaacagg tcgaggtcag caggacgttg agggacgaga ccggcgcccg
     3841 ccagggcagg tcttgggcat gctggagcca tttcacgtgc tggatcgcca tcgaggcgga
     3901 caccatcgcg aaggcctcat aggtcgcgaa cacaccgtgg cgacccgaga ggacgtagcc
     3961 ctcgagccag ccctggcaaa ggtgttcgct gagcacctcc atgacccgac catctggacc
     4021 gaggctctgg tcggtgggta gcagcggtcc catgaagcat cggtcggtga cctcgaagac
     4081 cgactgcagc cggttgctgg ccgtctcgtc cggcgagaag agccggaacg tgccgccgcc
     4141 atcgggccgg gccgtcgcgg catacaggtc tcgcatgagc tcgccggcag gcagggtgtt
     4201 ctcgacccac acctgaccag gggtgggtac gtccacctcg taggtgccga ggtccagcgg
     4261 cggcaggtcc tt
//
LOCUS       DASYFY010000553         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_92929, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000553 DASYFY010000000
VERSION     DASYFY010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92929"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..573
                     /locus_tag="VGN19_11270"
     CDS             70..573
                     /locus_tag="VGN19_11270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEV7196512.1"
                     /translation="MTRITVRVDGVDYSDEVEPRLLLVHYLRESLGKTGTVVGCDTSN
                     CGACTVHLDGRSVKSCNVLAVQADGHEVSTIEGLARDGELHPMQVAFHECHALQCGYC
                     TPGMIMQAIDLLNENPHPSEEEIRLGLEGNLCRCTGYHNLVKAVQQAAGTSLEASPAL
                     AAESRLS"
     gene            570..>1669
                     /locus_tag="VGN19_11275"
     CDS             570..>1669
                     /locus_tag="VGN19_11275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEV7196513.1"
                     /translation="MTVTQELPAEIGRSRLRKEDQRLVTGRTRWTDNIQLPGMQHLAM
                     VRSPFAHARITGVDASAAKTAPGVVAVLTGQDVKDIQGGMANAWPITEDQVAPTHPAI
                     AVDHVAFAGEVVAVVVARTAAEARDAAELVDVDYDELPAALDLKRSAADEVLAHPDLG
                     TNKSAFWQFDSASAGTGGSVDEAIEKARTDGIVIEREYRQQRLIPAFMEPRSVVCDPT
                     GEQLVIYSATQVPHFVRIFTALVLGIPESKIRVIAPDVGGGFGGKLQHTPEEVIAVLA
                     ARHTGKPVKYTETRSESLVSAHHGRDQWQKLTLAATKDGTVTGLKVDLLADMGAYLGL
                     VTSGIPILGAFMFNAIYKFPAYQFNCTNVFTN"
BASE COUNT          302 a          585 c          541 g          241 t
ORIGIN      
        1 caccacctag aaaaacgatg cagcaggagg cagaccgtct cccaggcatt cgacacaagg
       61 gagtgatcga tgacccgaat cactgtcagg gtcgacggag tcgactattc cgacgaggtg
      121 gagccacgtc tgctcctcgt ccactacctg cgggagtccc tgggcaagac cgggaccgtc
      181 gtcggatgcg ataccagcaa ctgcggtgcc tgcaccgtgc atctcgacgg gcgcagcgtg
      241 aagtcgtgca acgtcctggc ggtgcaagcc gacggccacg aggtgtccac gatcgagggg
      301 ctggctcggg acggcgagct ccacccgatg caggtggcgt tccacgagtg ccacgcactg
      361 cagtgtggct actgcacgcc ggggatgatc atgcaggcga tcgacctgct caacgagaac
      421 ccgcatccct ccgaggagga gatccggctg ggtctcgagg gcaacctgtg ccgctgcacc
      481 gggtaccaca acctcgtcaa ggcagtgcag caggcggctg ggacgtcgct cgaggcgagc
      541 cctgccctgg cagcggaaag tcggctgtca tgaccgtcac ccaggagctc cccgccgaga
      601 tcggcaggag ccggctgcgc aaggaggacc agcggctggt caccggtcgc acccgctgga
      661 ccgacaacat ccagcttccg gggatgcagc acctcgccat ggtgcgcagc cccttcgccc
      721 acgcccgcat caccggagtc gacgcctcgg ccgccaagac cgcccccggg gtcgtcgcgg
      781 ttctgaccgg ccaggacgtc aaggacatcc agggtggcat ggccaatgcc tggccgatca
      841 ccgaggacca ggtcgcgccg acccacccgg ccatcgccgt ggaccacgtc gccttcgccg
      901 gtgaggtcgt cgccgtcgtc gtcgcacgta ccgccgcgga agcgcgcgat gccgccgagc
      961 tggtcgacgt ggactacgac gagctccccg ccgcgctcga cctcaagcgg tccgccgccg
     1021 acgaggtgct cgctcaccct gacctgggca ccaacaagag cgcgttctgg cagttcgact
     1081 ctgcgagcgc aggcaccggc ggctcggtcg acgaggccat cgagaaggcg cgcaccgacg
     1141 gcatcgtgat cgagcgcgag taccggcagc agcggctgat ccctgccttc atggaacccc
     1201 gctcggtggt ttgcgacccg accggcgagc agctggtcat ctactcggcg acccaggtgc
     1261 cgcacttcgt gcggatcttc acggcgctcg tcctgggcat cccggagagc aagatccggg
     1321 tcatcgcgcc ggacgtcgga ggcggcttcg ggggcaagct ccagcacacc ccggaggagg
     1381 tcatcgcggt cctcgccgcg cggcataccg gcaaaccggt gaagtacacc gagacccgca
     1441 gcgagtccct cgtctcggcc caccacggcc gcgaccagtg gcagaagctg accctggcgg
     1501 ccaccaagga cggcacggtg accggtctca aggtcgacct gctggccgac atgggtgcgt
     1561 atctgggact ggtcacctcg ggcatcccga tcctcggggc cttcatgttc aacgcgatct
     1621 acaagttccc ggcctaccag ttcaactgca ccaacgtgtt caccaacaa
//
LOCUS       DASYFY010000554         4416 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_881498, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000554 DASYFY010000000
VERSION     DASYFY010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4416
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_881498"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1457)
                     /gene="hrpA"
                     /locus_tag="VGN19_11280"
     CDS             complement(<1..1457)
                     /gene="hrpA"
                     /locus_tag="VGN19_11280"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HEV7196514.1"
                     /translation="MSSAGSPQPSAARNQGTGSRRGRGGRGSRGDRGGAPRPRKPRSS
                     IPVPELAYPAELPVVARKDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLEVGRGRDG
                     LIGHTQPRRIAARSVAERIAEELGVELGTAIGYQVRFTDESSDDTLVKVMTDGILLAE
                     LQRDRMLRKYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKLVITSATIDPERFAR
                     HFADRAGTPAPIIEVSGRTYPVEVRYRPLTDPDRPDDRGSATVGAGDERDQVTAVCEA
                     VEELWTERPADGTGHDILVFLSGEREIRDTAEALQGLRLPQTEVLPLYARLSAAEQHR
                     VFGRPTGRRIVVATNVAETSLTVPGIRYVVDAGTARISRYSQRTKVQRLPIEAISQAS
                     ANQRAGRCGRLADGICIRLYSEEDYASRPEFTEPEIQRTSLASVILQMTALGLGDIGA
                     FPFVDPPDSRQIADGVRLLEELQAFEARAAGEGGPV"
     gene            1517..1948
                     /locus_tag="VGN19_11285"
     CDS             1517..1948
                     /locus_tag="VGN19_11285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HEV7196515.1"
                     /translation="MTISGAYVPSTSTWVREQVEKIEETGTTTSVQVQDRPVVLLTMV
                     GVSGKVRKVPLMRVEHSGAYAAVASQGGAPEHPKWYANIRKNPVLDLQDGERTWTVRA
                     RELSGAERDQWWQRCVAAFPPYAQYQTKTDRLIPVFVLEAV"
     gene            complement(1985..2455)
                     /locus_tag="VGN19_11290"
     CDS             complement(1985..2455)
                     /locus_tag="VGN19_11290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196516.1"
                     /translation="MADTPSPQNSATPSSSARPQSSTRSGPGVVLVALYGLLALAATG
                     RSVLQISEYFARAPLAYLLSALAAVIYLVATVALARGGRSSRRVALVAISVELAGVLT
                     VGLASYLAPSAFPDKTVWSHFGSGYGFVPLVLPILGLLWLRRVAQTAAERPILP"
     gene            complement(2448..2813)
                     /locus_tag="VGN19_11295"
     CDS             complement(2448..2813)
                     /locus_tag="VGN19_11295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196517.1"
                     /translation="MFYPLTVALLAGAVALMLLAGWYAARSTLLDDRLLLVAALLEVG
                     LVVQLVVALAHLGRVPGSAAERATFVAYAVTLPCVPPASVFLALKEKTRWSMAVVAVG
                     AFAAAVMTARLQQIWSLHG"
     gene            complement(2833..4062)
                     /locus_tag="VGN19_11300"
     CDS             complement(2833..4062)
                     /locus_tag="VGN19_11300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196518.1"
                     /translation="MMIRYLRVAGVDDPSEAATEGWVAVVRGLAGFGGDEIAWRAWVL
                     RCTRQRAVQAPLSHGRSATSLLPGRAIDPRHDDQQLIDLAGAQSLTHRGIDQTIAAIR
                     DLPLGQGEILMLRLGVQLPVAIVADLVGTDVVAVRRAESGAVDRLGAERELLAWSLAA
                     PPVLAELSDQRAALRAFVTQTASRPPVPHTRVIAISRPAGAPSSGLARSRALAVGIAV
                     LSASAMSLGGLSAAAYAGMLPASVQRVMHRLIGAPAPATTARRSTQVTSVGGPTHRAP
                     RGTAPGTGSSKAPTHGPTVGLTHSSSRPVVPPGNPTAPGRGGTPNVHATSKRPHPTKP
                     SLTVPSLTVPSLTVPSLTLPSLTVPSLTKPHPTKPVATSPSPSLPGSTTRPVAGHPGK
                     PSPITLVEGAVGGATPA"
     gene            complement(4217..>4416)
                     /locus_tag="VGN19_11305"
     CDS             complement(4217..>4416)
                     /locus_tag="VGN19_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196519.1"
                     /translation="VAVLIDATVVRALLVPATMRLLGRANWYAPAPLARWWDRHGHHE
                     APAATPARSDRKRTLSQVSGP"
BASE COUNT          733 a         1498 c         1565 g          620 t
ORIGIN      
        1 accggtccgc cctcgcccgc cgcccgtgcc tcgaaggcct gtagctcctc gagcaaccgc
       61 accccgtcgg cgatctgacg cgagtccggg gggtcgacga acgggaacgc cccgatgtcg
      121 cccagcccca gagcggtcat ctgcaggatg acggacgcga ggctggtgcg ctggatctcc
      181 ggctcggtga actcgggtct cgacgcgtag tcctcctcgg agtagagcct gatacagatg
      241 ccgtcggcca gacgaccgca ccgacccgca cgctggttgg cactggcctg cgagatggcc
      301 tcgatgggca accgctggac cttggtgcgt tggctgtacc gagagatgcg cgccgtcccc
      361 gcgtcgacga cgtacctgat gccaggcacg gtcagcgagg tctcggcaac gttggtggcg
      421 accacgatcc gccgacccgt gggacgcccg aacacccgat gttgctccgc tgcggacagc
      481 cgcgcgtaca ggggcagcac ctcggtctgt ggcagcctca agccctgcaa ggcctccgcg
      541 gtgtccctga tctcccgttc accggagagg aacaccagga tgtcgtggcc ggtgccgtcc
      601 gcgggacgtt cggtccacag ctcctcgacc gcctcacaca ctgcggtgac ctggtcccgc
      661 tcgtccccgg caccgaccgt cgcggaaccc cggtcgtcgg gacggtccgg gtcggtcaac
      721 ggacggtagc gaacctcgac gggataggtg cggcccgaga cctcgatgat cggggcgggc
      781 gttccagccc tgtccgcgaa atgccgggcg aagcgctcgg ggtcgatcgt ggccgaggtg
      841 atgaccagct tgaggtcagg acgcctgggg agcagctgct tgaggtagcc caggatgaag
      901 tcgatgttga gagaacgttc gtgcgcctcg tcgatgatga tcgtgtcgta cttgcgcaac
      961 atgcggtcgc gctgcagctc cgccagcaga attccgtcgg tcatcacctt cacgagcgtg
     1021 tcgtcgctgg actcgtcggt gaagcgcacc tggtacccga tggcagtgcc gagctcgacg
     1081 cccagctcct cggcgatccg ctcagccact gagcgagccg cgatgcggcg cggctgcgtg
     1141 tggccgatca gcccatcgcg gccacgcccg acctcgaggc agatcttggg cagctgggtg
     1201 gtcttgccgg accccgtctc gccggccacg atgaccacct ggtggtcgcg gatcgccgcc
     1261 gcgatgtcgt ccttgcgcgc gacgacggga agctcggccg gatacgcgag ctcagggacc
     1321 gggatggagc tacgcggctt acgaggtcgg ggggcacccc cacgatcgcc acgactcccg
     1381 cgacccccac gaccgcgcct tgagcccgtg ccctggttcc gggcagccga gggctgcgga
     1441 gaaccggcag aggacatgcc ccgcagcata cgtttcggcc aggcataact tcagaggtcg
     1501 tgacgttgtc cggagcatga cgatttctgg tgcctatgtc cccagcacga gcacgtgggt
     1561 ccgcgagcag gtcgagaaga tcgaggagac cggaacgacc acgtcggtcc aggtccaaga
     1621 ccgacccgtg gtgctcctga cgatggtcgg agtctccggc aaggtccgca aggtgcccct
     1681 catgcgggtc gagcactcag gcgcgtatgc cgcggtggcc agtcagggtg gggccccgga
     1741 acacccgaag tggtacgcca acattcgcaa gaacccggtc ctggaccttc aggacgggga
     1801 gcgcacgtgg acggtccgtg cgcgcgagct ctccggagcc gagcgggacc agtggtggca
     1861 gcgctgcgtg gcggccttcc cgccctatgc gcagtaccag accaagacgg accggctcat
     1921 ccccgtcttc gtgctcgaag cggtctgagc cggcgccaaa ccgagcgccg acctcacgtc
     1981 cgcgtcaggg caggatcggg cgttcggctg cggtctgagc cacccgccgc aaccacagga
     2041 gaccaagaat ggggagcacc agcgggacga acccgtagcc cgagccgaag tgcgaccaca
     2101 cggtcttgtc ggggaaggcg ctcggcgcca ggtacgaagc cagcccgacg gtgaggaccc
     2161 cagcgagctc caccgagatg gccaccagcg ctactcgacg cgagctgcgg ccgccgcggg
     2221 ccagcgccac ggtggccacg agatagatca ccgcggcaag ggccgacagc aggtaggcca
     2281 gcggcgcacg ggcgaagtac tcgctgatct gcagcacgga tcgcccggtc gcggcgagcg
     2341 ccagcaggcc gtacagcgct acgaggacca ccccggggcc ggaccgggtg gagctctgcg
     2401 ggcgcgctga gctcgatggg gtggctgagt tctgggggct gggtgtgtca gccatgcagg
     2461 ctccagatct gttgcagacg tgcggtcatc acagcagccg cgaaggcccc gacggccacc
     2521 accgccatgg accagcgcgt cttttccttc agggcgagga acaccgacgc cggcgggaca
     2581 cagggcaggg tgaccgcgta ggcgacgaag gtcgcacgct ccgccgcgct tccagggacg
     2641 cggccgaggt gagccaaggc caccacgagc tgaacgacaa ggccgacctc gagcagcgcg
     2701 gcgacgagca acaggcggtc gtcgagaagg gtggaccgcg cggcatacca gcccgccagg
     2761 agcatcaatg ccacggcgcc cgcgagcaga gccacggtga gggggtagaa cacggcgcga
     2821 gcctacgcga gcctaggcgg gtgtggcccc acccaccgcg ccctcgacga gcgtgatcgg
     2881 gcttggcttg cccggatgcc cggcgaccgg acgggtcgtc gagccaggca ggctgggcga
     2941 cgggctggtc gcgactggtt tggtcggatg aggctttgtc agagaaggca cggtcagaga
     3001 aggcagggtc agtgaaggca cggtcagtga aggcacggtc agtgaaggca cggtcagtga
     3061 aggcttggtc ggatgtggcc gcttgctggt cgcgtggacg ttcggcgtac ccccacgccc
     3121 gggagctgtc ggattccccg gcggcacaac aggtctcgac gacgagtgcg tcaaccccac
     3181 cgtcgggccg tgcgtcgggg ccttcgagga tcccgtgccc ggggcggtcc cccgcggcgc
     3241 tcggtgggtc ggccccccga cggacgtgac ctgcgtcgag cggcgtgcag tcgttgcggg
     3301 ggcaggcgct ccgatcagcc ggtgcatgac gcgctggacg ctggcaggca acatgccggc
     3361 gtacgcggcg gcgctcagcc ctcccagtga catggccgac gccgacagga cggcgatgcc
     3421 gaccgcgagg gcacgcgagc gggcgagtcc tgagctgggt gcccccgccg gcctgctgat
     3481 cgcgatcacc ctggtgtgcg gtaccggcgg acggctggcc gtttgggtga cgaaggcacg
     3541 aagggcggcc cgctggtcgc tgagctcggc caggaccggt ggcgccgcca acgaccaggc
     3601 cagcagctcg cgctccgcac ccaaccggtc gaccgctccg gactcggccc ttcgcactgc
     3661 cacgacatcg gtgccaacca gatcagcgac gatggccacc gggagctgga caccaagccg
     3721 aagcatgagg atctcgccct gccccagtgg caggtcgcgg atggcggcaa tggtctggtc
     3781 gattccgcgg tgggtcagcg actgggcccc agccaggtcg atgagttgct ggtcgtcatg
     3841 acgtggatcg atcgcgcgcc cgggcaaaag gctcgtggcg cttcggccat gagagagcgg
     3901 ggcctggacg gcccgttggc gggtacatcg caacacccag gcgcgccagg cgatctcgtc
     3961 gccaccgaag cccgccaggc cacgaaccac ggcgacccac ccctcggtcg ccgcttcaga
     4021 ggggtcgtcg actcctgcga cgcgcaggta gcggatcatc atggggttgg cgtcacgcca
     4081 tagccgcaga aatgcgacct ggtcccctgc ctgcgcctcg tggagtgttc gagcaaagtc
     4141 cgcactcagc acactcacag tgtccaccag cgatccgcag gcacccctca tccgttcggc
     4201 ccccgcgttg ccgaggttac gggccgctga cctgcgacaa cgtccgttta cggtcgctgc
     4261 gcgccggcgt ggctgccgga gcctcgtggt ggccgtggcg atcccaccac cgcgccagtg
     4321 gcgccggggc gtaccagttg gcgcgcccca ggaggcgcat cgttgccgga accagcagcg
     4381 cccgaacgac cgtggcgtcg atgagaaccg cgacca
//
LOCUS       DASYFY010000555         6086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1512113, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000555 DASYFY010000000
VERSION     DASYFY010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6086
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1512113"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..951)
                     /locus_tag="VGN19_11310"
     CDS             complement(151..951)
                     /locus_tag="VGN19_11310"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEV7196520.1"
                     /translation="MPADLAIGAHVDSADPVSEARERGATLSQFFLGNPQGYKGPEFA
                     YAAGPEGLRADAEAAGIDLYVHAPYLINVATTNNRIRIPSRKLLQQFIDAGASIGAKG
                     LIVHGGHVDAASDVEKGFDNWRKAIAATDLKIPLLLENTAGGDNAMARTVERIARVWD
                     AIGSAEGSDQVGFCLDTCHAHAGGIPLATAVDRLRAITGRIDLVHCNDSRDEFDSGAD
                     RHANLGEGLIDPDELAGVVKAANAPVVIETRGGLEGQLADLQWLRARL"
     gene            1008..1769
                     /gene="rph"
                     /locus_tag="VGN19_11315"
     CDS             1008..1769
                     /gene="rph"
                     /locus_tag="VGN19_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEV7196521.1"
                     /translation="MTETTHPRHDGRTPDQTREVRITRNWLDHAEGSVLVEFGRTKVL
                     CAASFTEGVPRWLKGKGTGWVTSEYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGR
                     SLRAIIDTKALGENTIVLDCDVLQADGGTRTASITGAYVALVDAIEDARAKGLIAKNA
                     RPLRGSIAAVSVGIVNGAPVIDLDYPEDSTAGTDMNVVMTGDGRFVEIQGTAEGQPFD
                     RAMLDALLDKATVGCAELTAKQQEALATTPRERIL"
     gene            1766..2374
                     /gene="rdgB"
                     /locus_tag="VGN19_11320"
     CDS             1766..2374
                     /gene="rdgB"
                     /locus_tag="VGN19_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEV7196522.1"
                     /translation="MTRVVLATRNDHKVVELRAILADICGELGLEIVGASDFPGAPDV
                     VEDEITFEGNARLKAEALAAHTGLPSLADDSGLAVEVLGGAPGIFSARWAGRHGDDRA
                     NLELLLAQLSEVRAEHRGAAFVCAAVLALPDGRVRATEGRMAGTVATQPRGSHGFGYD
                     PILVVEGDTRHAAELSPQEKNAISHRGKAFRAMMPHLRELLG"
     gene            2409..2490
                     /locus_tag="VGN19_11325"
     tRNA            2409..2490
                     /locus_tag="VGN19_11325"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2443..2445,aa:Leu,seq:tag)
     gene            2623..3099
                     /locus_tag="VGN19_11330"
     CDS             2623..3099
                     /locus_tag="VGN19_11330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEV7196523.1"
                     /translation="MLNTVERRNVLRAAGAAGAAAVAGLALTDTAQADDGSSAVIGTW
                     VITHTDNPPSPPNTGKGVVTLGPGGILQNVEIAPSGQVGGGAWEGLGGGAFEAVFLTG
                     SPGGGGQPDAIVEVKPTGRVVGDRIWGTYTVSVSNASTGQVLFNGTGKFHGTRLEI"
     gene            complement(3166..4209)
                     /locus_tag="VGN19_11335"
     CDS             complement(3166..4209)
                     /locus_tag="VGN19_11335"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014921842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEV7196524.1"
                     /translation="MRTVNAYAATSATSPLVPTTIERREVGPHDVLIEIKYAGICHSD
                     IHAARGDWGPASYPLVTGHEIAGIVTEVGSEVTRHAVGDRVGVGCMVDSCGECRYCQA
                     GEEQFCVNGNIGTYGATGKDGQLTQGGYSTHIVVTEGFVVRIPDGLALDVAAPLLCAG
                     ITTFSPLHHWGAGPGRKVAVVGLGGLGHMAVKIAHAMGAEVTVLSQSLKKQEDGLRLG
                     ADHYYATADPSTFEALAGSFDLIINTVSAVLDLNAYLGLLAVDGALVNVGAPAEALSL
                     NAFSLILARRSYAGSLIGGIRETQEMLDFCAEHGIGADVEVIAADQVNEAWERVLASD
                     VRYRFVIDTATLG"
     gene            4329..4949
                     /locus_tag="VGN19_11340"
     CDS             4329..4949
                     /locus_tag="VGN19_11340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020018323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1684 domain-containing protein"
                     /protein_id="HEV7196525.1"
                     /translation="MSDSTDNRAPANTALEVASWRREVHALYAALRAEPTPTSAHALW
                     VDARSRLFLGHPASPRSGDQRLRHAPYDPAYRFVVPIEEAPPQRWEFASATDGIVPFE
                     RVGSVRLGDLGTLDVWWLDSYGGGIFLPARDGSAGQETYGAGRYVLDTVKGTDLGRQG
                     ADWIVDLNFAYNPSCVYDPRWNCPLAPAGNRFAASAPVGELLPEGY"
     gene            4954..5217
                     /locus_tag="VGN19_11345"
     CDS             4954..5217
                     /locus_tag="VGN19_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ada metal-binding domain-containing protein"
                     /protein_id="HEV7196526.1"
                     /translation="MYTLTGPDGRPFASATPGTLGGHRRGRLYGRLDCPSALRALGRG
                     GYAAERVFFADETTAVAAGYRPCAVCLPRQYRAWRSHVTPIDV"
     gene            5237..>6086
                     /locus_tag="VGN19_11350"
     CDS             5237..>6086
                     /locus_tag="VGN19_11350"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEV7196527.1"
                     /translation="MNHLVRDLLPVLDLPTSYAAEHLDLADGNGLPSSLPVNTLGCGA
                     VAAAALAGLALRGGEGVHVDPRAVAVSFRADQLMSVDGLPVPSFAPLSGFFEAADGWV
                     RTHANYPHHRDRLLRALDLPAGSAREEVAGAIRATAADEVEDLVTADHGVAVRVRSMA
                     QWRASEQFTAVASHDLLEVRSVGDAPASVIPARPRVLDLTRVLAGPVATRTLALFGCD
                     VLRVDSPGLPELESLHLDTGSGKRSTLVDLHNPHARERLHALLDEADVLVTGYRPGAL
                     AAYGLDP"
BASE COUNT          899 a         2079 c         2166 g          942 t
ORIGIN      
        1 gttctgcacg gacttccggt tgaccacggt caccgcgcac cggctggccg agcgcgagta
       61 ctcggtagcg gccttcaccc atggtccaca cctcggcgag cagcctcgcg aacacatccg
      121 ccggttcctc gcgagtcacc cggcctcgac ctagaggcga gctcgcagcc actgcaggtc
      181 ggcgagctga ccctccagcc ccccgcgtgt ctcgatgacc accggcgcgt tggccgcctt
      241 cacgaccccg gccagctcgt cggggtcgat gagcccctcg ccgaggttgg catggcggtc
      301 ggcgccggag tcgaactcgt cgcggctgtc gttgcagtgc accaggtcga tgcgtccggt
      361 gatggcccgt agccggtcga cggcggtggc gagcggaatc ccaccggcgt gggcatggca
      421 ggtgtcgaga cagaacccga cctggtccga gccctcggcg cttccgatgg cgtcccagac
      481 tcgcgcgatc cgctccacgg tccgcgccat cgcgttgtcg ccaccggcgg tgttctccag
      541 cagcagaggg atcttcaggt cggtggccgc gatggccttg cgccagttgt cgaagccctt
      601 ctcgacgtca ctggcggcgt cgacatgacc tccgtgcacg atcaggccct tggcgccgat
      661 cgaggcaccg gcgtcgatga actgctggag gagcttgcgg ctggggatgc ggatgcggtt
      721 gttcgtcgtc gccacgttga tcaggtaggg cgcgtggacg tacaggtcga tcccggccgc
      781 ctcggcgtcc gcgcgcaggc cctccgggcc ggcggcatac gcgaactcgg ggcccttgta
      841 accctgcggg ttgcccagga agaactggct cagcgtggcg ccgcgctcgc gggcctccga
      901 cacggggtcg gcggagtcga cgtgggcacc gatcgcgagg tctgcgggca tggcacccag
      961 actaggcggc gggtccgacg tcggggcccc ccgttagcct tgccgacgtg actgagacga
     1021 cgcacccccg ccacgacgga cgcacccccg accagacccg cgaggtgcgc atcacgcgca
     1081 actggctcga ccacgccgag ggcagcgtgc tcgtggagtt cgggcgcacc aaggtgctgt
     1141 gcgccgcgtc gttcaccgag ggcgtgcccc ggtggctcaa gggcaagggc accggctggg
     1201 tgacctccga gtacgagatg ctgccgcgct cgaccaacac ccgctccgac cgcgagtcgc
     1261 gcaagggcaa ggtcggcggc cgcacccacg agatcagtcg gctcatcggt cgcagcctgc
     1321 gcgcgatcat cgacacgaag gcgttggggg agaacaccat cgtgctcgac tgcgacgttc
     1381 tgcaggccga cggagggacc cggaccgcgt ccatcaccgg ggcctacgtc gcgctggtcg
     1441 acgcgatcga ggacgcccgc gccaagggcc tgatcgccaa gaacgcgcga ccgctgcggg
     1501 gctccatcgc cgctgtgtcc gtgggtatcg tcaatggcgc cccggtcatc gacctcgact
     1561 atcccgagga ctccaccgcc gggaccgaca tgaacgtcgt gatgaccggc gacgggcgct
     1621 tcgtcgagat ccaggggacc gccgagggtc agccgttcga ccgcgccatg ctcgacgccc
     1681 tgctcgacaa ggccaccgtc gggtgcgccg agctcacggc caagcagcag gaggccctcg
     1741 ccacgacccc gcgcgagcgc atcctgtgac ccgggtcgtg ctggccaccc gcaacgacca
     1801 caaggtggtc gagctgcgcg cgatcctggc cgacatctgt ggcgagctcg gactagagat
     1861 cgtcggggcg tccgacttcc ccggcgctcc cgacgtggtg gaggacgaga tcaccttcga
     1921 gggcaacgcg cggctcaagg ccgaggcgct cgcggcccac accggactgc cgtcgctggc
     1981 cgacgactcg ggcctggcgg tggaggtgct cggcggagcc ccgggcatct tctcggctcg
     2041 gtgggctggc cgccacggcg acgaccgcgc caacctcgag ctgctgctcg cccagctgag
     2101 cgaggttcgc gccgagcacc gtggggcggc gttcgtctgc gcagcggtgc tggccctgcc
     2161 cgacggcagg gtgcgtgcca ccgagggtcg gatggccgga accgtggcca cccagccgag
     2221 ggggagccac ggcttcggct atgacccgat cctcgtcgtc gagggcgaca cccgccatgc
     2281 ggccgagctg tcgccgcagg agaagaacgc gatctcccac cggggcaagg cctttcgcgc
     2341 gatgatgccg cacctgcgcg agctgctggg ctgacccatc cgccgcgccc cggctagagt
     2401 gtccgcgcgc gcaagtggtg gaactggtag acacgcagga tttaggttcc tgtgccttcg
     2461 ggtgtgcggg ttcaagtccc gccttgcgca ctctgtgagg tcgtggggcg gtgtcggggg
     2521 tggcagtact acgtcaaatg cgcgttgggg cgcccctgca cccgcagtag cgtgcgctcg
     2581 tgcgggggca gcaatcggtg tcttgaactg gaggtcgatc ccatgctgaa cacggtagaa
     2641 agacgaaatg tgctccgagc cgctggagcc gcgggcgcgg ccgccgtggc ggggctggcg
     2701 ctgactgaca cggctcaggc ggacgatgga agcagcgctg tcatcggcac ctgggtcatc
     2761 acccacacgg acaacccgcc ttcgcccccg aacacgggca agggcgtggt cacgctcggt
     2821 ccgggaggga tcctgcagaa cgtggagatc gcgccatcgg gccaggtggg cggcggtgcc
     2881 tgggagggac tgggcggggg agccttcgag gctgtcttcc tcaccggaag tcccgggggc
     2941 ggtggccaac cggacgcgat cgtcgaggtc aagccaaccg gacgagtcgt cggagacagg
     3001 atctggggca cgtacacggt ctccgtctcc aacgcgagta ccggccaggt gctgttcaac
     3061 ggcaccggca agttccacgg gacgcgtctg gagatctgag cgcatacggg ccgcgcaggg
     3121 gagggggttc cgctcccctg cgcggccgcc agcaaccggt ggccgtcagc ccaacgtggc
     3181 agtgtcgatg acgaagcggt accgcacgtc cgaggcgagc acgcgctccc aggcctcgtt
     3241 gacctggtct gccgcgatca cctcgacgtc ggcgccaatg ccgtgctcgg cacagaagtc
     3301 gagcatctcc tgggtctccc ggatgccgcc gatcagggag cctgcatacg agcggcgcgc
     3361 caagatcagc gagaacgcgt tgagcgacaa cgcttccgcg ggtgccccca cattgaccag
     3421 ggcgccgtcg acggcgagca gtccgaggta ggcgttcagg tcgagcaccg cactgaccgt
     3481 gttgatgatc aggtcgaacg acccggccag cgcctcgaag gtgctcgggt cggctgtcgc
     3541 gtagtagtgg tcggcgccga gacgaaggcc gtcctcctgc ttcttcaacg actgcgacag
     3601 gacggtgacc tctgcgccca tggcgtgcgc gatcttgacc gccatgtggc ccaagccgcc
     3661 gaggcccacg acggccacct tgcggccggg gccagcgccc cagtggtgga ggggcgagaa
     3721 cgtcgtgatc cccgcgcaca gcagaggggc ggcgacgtcg agcgcgagcc catcggggat
     3781 ccgcacgacg aagccctcgg tcacgacgat gtgggtggag tagccgccct gcgtgagctg
     3841 gccgtccttg ccggtggcgc cataggtgcc gatgttgccg ttgacgcaga actgctcctc
     3901 accggcctgg cagtaccggc actcgccaca ggagtcgacc atgcacccga cgccgacccg
     3961 gtcgccgacg gcgtgccggg tgacctcgga gccgacctcg gtgacgatcc cggcgatctc
     4021 gtggccggta accagggggt acgaagcggg gccccagtca ccgcgggcgg cgtggatatc
     4081 cgagtggcag atcccggcgt acttgatttc gatgaggaca tcatggggtc cgacctcgcg
     4141 tctctcgatc gtggtcggga cgagggggct ggtggcggag gtcgctgcgt aggcgttgac
     4201 ggtgcgcatg gttctccaat gcgatggtcg tggggtcgga tggcgtccgg gtcacgtcgt
     4261 tgtcgagccg gtgccccatc agccaaccac gttgggcgca cggcagtgaa gctagagtcg
     4321 atcgcaccat gagtgactcc accgacaaca gggccccagc caacacagcg ctcgaggtgg
     4381 cctcgtggcg tcgcgaggtt catgccctgt atgccgcact gcgggccgaa cccaccccga
     4441 ccagcgcaca tgcgttgtgg gtggacgccc gttcgcggct ctttctcggt catccggcgt
     4501 cgccacgcag tggcgaccag cgtctgcggc acgcgccgta cgacccggca taccgtttcg
     4561 tcgtcccgat cgaagaggcg ccgccgcagc gctgggagtt cgcctccgcg acagacggga
     4621 tcgtgccgtt cgagcgggtg ggctcggtgc gactgggaga cctcgggacg ctggatgtct
     4681 ggtggctcga ctcctacggt ggcgggatct tcctgccggc ccgggacggt agcgccgggc
     4741 aggagaccta cggggctgga cggtacgtgc tcgacacggt caagggcacc gatctcggca
     4801 ggcagggcgc cgactggatc gtcgacctga acttcgccta caacccgtcc tgcgtctacg
     4861 acccgcgctg gaactgtccg ttggctcccg ctggcaacag gttcgcggca tccgcgccgg
     4921 tgggagagct cctgccggag ggctactgag ccggtgtaca cgctgaccgg gccggatggc
     4981 cgcccgtttg ccagcgcaac ccccggaact ctgggcggcc atcggcgtgg ccgtctgtac
     5041 ggccgactcg actgcccgtc ggcgctgcgc gccctgggcc gcggtgggta tgccgccgag
     5101 cgagtgttct ttgccgacga gacgaccgcg gtggctgccg gttaccgacc atgtgcggtc
     5161 tgtctgcctc ggcaataccg cgcctggcgg tctcatgtca cgcctatcga cgtctgacga
     5221 cgcctaacat cgagtggtga accacctggt gcgggacctc ctgccggtgc tcgaccttcc
     5281 tacctcgtat gccgcggagc acctcgacct ggccgacggc aatgggcttc cgtcgtcgtt
     5341 gcctgtcaac accctcggct gtggcgccgt cgctgccgcg gccctcgccg ggctggcgct
     5401 gcgtggtggc gaaggggtgc acgtcgaccc gcgagcggtg gcggtctcct tccgagcgga
     5461 ccagctgatg agcgtcgacg gtttgcccgt cccgtcgttc gcgcccttgt ccgggttctt
     5521 cgaggcggcc gacgggtggg tccgcacgca cgccaactat ccgcaccacc gtgaccggct
     5581 gctcagagca ctggacctgc cggcaggttc ggctcgagag gaggtggccg gggcgatccg
     5641 ggccacggcg gctgacgagg tcgaggacct ggtcacggcc gaccatggcg tcgcggttcg
     5701 agtgcggtcg atggcgcagt ggcgagcgtc ggagcagttc accgcagtcg cctcccatga
     5761 cctgctcgag gtgagatcgg tgggcgacgc gccagcctca gtgatcccgg cccgcccacg
     5821 ggtgctcgat ctgacccggg tgctcgccgg acccgtggcc acccgcacgc tcgccctgtt
     5881 cgggtgtgac gtcctgcgcg ttgacagtcc gggcctgccc gagctcgagt cgctgcacct
     5941 cgacacgggg tccggcaagc gatccacgct ggtggacctg cacaacccgc acgcccgcga
     6001 gcggctgcac gcgctgctgg acgaggccga cgtcctggtg acgggctacc gtcccggtgc
     6061 gctcgcggca tacgggctcg atccgg
//
LOCUS       DASYFY010000556         2124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1460010, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000556 DASYFY010000000
VERSION     DASYFY010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460010"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..607
                     /locus_tag="VGN19_11355"
     CDS             <1..607
                     /locus_tag="VGN19_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018774563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HEV7196528.1"
                     /translation="ALLGTMAGVSITAVLGSASVAAAHLTGVSSDDNQALQIVAQQLD
                     LSNLLTCGIILAGLGILNDVTITQSSAVWELWELAPSTSRRRLYTQAMRIGRDHIAST
                     VYTVVFAYAGAALPVLLLINLYDQPLWRTLTSLDIGEELVRIMAGGVGLVLSVPATTA
                     LAVLVVGSITRATHAPEPAPTEEILPDSRRARRAQRARRRL"
     gene            671..856
                     /locus_tag="VGN19_11360"
     CDS             671..856
                     /locus_tag="VGN19_11360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018171626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196529.1"
                     /translation="MSPRARLVVGVVLALLGLVWALQGFGVLSGSAMSGKALWAGVGS
                     FLVVIGVVVAASGRRRT"
     gene            complement(874..1869)
                     /locus_tag="VGN19_11365"
     CDS             complement(874..1869)
                     /locus_tag="VGN19_11365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196530.1"
                     /translation="MPTWRERLKAHGEVPRGALDAYKVAGRGVYQYVLDLDSLRAEGA
                     SLPAVQAALLAGWVAFSLQVLGDEMLDADAALDPATAKYVPPATAQQVTEFYEPVRAW
                     IGRAQAAKANPSYRLDVTLPEVLPPWVEVEPCPPAHVFALRQAVTRLRQYTEGLVPGF
                     DSQQGHAGDLVAQGLAEAGSAADYATGMWGDPTSEPLPQTHAVIESSLKTAAETYFYL
                     GQLIAMPSLADAPRRVRDEGDDPTKAKPQSFLESMTRAYPQVGQPRQGGALASAAGGF
                     LGGLVGGAIIQEILGGSGFGGDDGGFGGFGGGDFGGGDFGGDGGGDFGGDGGDWG"
     gene            complement(1929..>2124)
                     /locus_tag="VGN19_11370"
     CDS             complement(1929..>2124)
                     /locus_tag="VGN19_11370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196531.1"
                     /translation="VTELNSTSPEVLEMHAHHAQLNSEADDILAQLEAGPAQSQLEAG
                     VTPLALSAGKADVTPQSPTP"
BASE COUNT          320 a          741 c          718 g          345 t
ORIGIN      
        1 agccttgctg ggcaccatgg ctggggtgtc catcaccgcg gtgctcggct ccgcgtccgt
       61 ggcggccgcg cacctgaccg gcgtgagcag cgacgacaac caggccctgc agatcgtggc
      121 gcagcagctc gacctcagca acctgctcac ctgcggcatc atcttggccg gcctcggcat
      181 cctcaacgac gtcacgatca cccagagctc cgccgtctgg gagctctggg agctcgcgcc
      241 gtcgacgtca cggcgacggc tctacaccca ggccatgcgc attggacggg accacatcgc
      301 gtcaaccgtc tacaccgtgg tcttcgcgta tgccggcgcg gcgttgcccg tacttctgct
      361 gatcaacctc tatgaccagc ccctgtggcg aactctgacc agtctcgaca tcggcgagga
      421 gctggtccgg atcatggctg gcggggtggg actggtgctc agcgtgccag cgacgacggc
      481 gttggccgtc cttgtggtcg gctccatcac cagggcgacg catgccccgg agcccgcgcc
      541 gaccgaggag atcctgcccg acagtaggcg cgcccgacgt gctcagcgcg cgaggcgacg
      601 cctctagtcc aatgcggtgg gaagttgagc cgtcggctca ctcattggct ccagggctac
      661 gctcggttcc atgagcccgc gcgcgagact ggtcgtcgga gtcgtccttg ccctcctcgg
      721 tctggtgtgg gcgctgcagg gcttcggtgt cctgagcggc agcgccatga gcggcaaggc
      781 gctatgggct ggcgtcggct cgttcctggt cgtgatcggt gtggtagttg ctgcgagcgg
      841 acgacggcga acctgaggga ctgagggccg gggctagccc cagtccccac cgtccccacc
      901 aaagtcgccg cccccgtcgc ctccgaaatc accaccgccg aagtcgccgc cgccgaatcc
      961 tccgaaacca ccatcgtctc cgccgaagcc gctgccgccc aagatctcct ggatgatcgc
     1021 tccacccacg aggccaccga ggaaaccgcc ggcggcactg gcgagcgcac cgccctgacg
     1081 gggctggccc acctgtgggt aggcgcgcgt catgctctcg aggaacgact gtggtttcgc
     1141 cttggtcggg tcgtcaccct cgtcccgaac tcgccgaggc gcatccgcca gggagggcat
     1201 ggcgatcagc tggccgagat agaagtacgt ctcggcggcg gtcttgaggc tcgactcgat
     1261 cacggcgtgc gtctgaggaa gcggctcgct cgtggggtct ccccacatcc cggtggcgta
     1321 gtccgcggcc gatcccgcct ccgccaagcc ctgggcaacc aggtcgccgg catggccctg
     1381 ctggctgtcg aaacccggca ccagaccctc ggtgtactgc cggagtcgag tgacagcctg
     1441 acgcagcgcg aacacgtggg ccggcggaca gggctcgacc tcgacccacg gcggcaacac
     1501 ctccgggagc gtgacatcga ggcggtacga ggggttggcc ttggctgcct gggcccgacc
     1561 gatccacgcc cgaaccggct cgtagaactc ggtcacctgc tgcgccgtag ccggcgggac
     1621 gtacttggcg gtggccggat cgagtgccgc gtcggcgtcg agcatctcgt cccccagcac
     1681 ctgaagcgag aaggccaccc acccggccag caacgcggcc tggacggcgg gcagcgaggc
     1741 gccctcggcg cgcagggagt cgaggtcgag gacgtactgg tacacgcctc tgcctgcgac
     1801 cttgtaggcg tccagcgccc cccggggaac ctcgccgtgg gccttcaacc gctcacgcca
     1861 cgtgggcatg ggaatctcct actcgttgct aagactgtgc ggtgccaaga ctctgcggta
     1921 gagggcggtc agggcgtcgg gctctgcgga gtgacgtctg ccttgcccgc cgacaatgcg
     1981 agcggtgtca cccccgcctc cagctgagac tgggcagggc cggcctcgag ctgggcaagg
     2041 atgtcatcgg cctcgctgtt cagctgagcg tggtgggcgt gcatctcgag cacctcaggg
     2101 ctggtgctgt tgagctccgt cacg
//
LOCUS       DASYFY010000557         2084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_724151, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000557 DASYFY010000000
VERSION     DASYFY010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724151"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..570
                     /locus_tag="VGN19_11375"
     CDS             142..570
                     /locus_tag="VGN19_11375"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEV7196532.1"
                     /translation="MKTIHHVFEIAAPPGKVFAALTTSEGLSGWWTTKVSAKAEIGAV
                     VDFTFGGDFNPDMRVTELDPPGLVGWECVGGHEPWAENTFRFELEEKGTGTVVRFWQN
                     YARELSDDAYGTYNFNWGYYLESLRLLGETGTGKPFQAAQ"
     gene            567..1316
                     /locus_tag="VGN19_11380"
     CDS             567..1316
                     /locus_tag="VGN19_11380"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEV7196533.1"
                     /translation="MTAKNLVLHATTELFGHRDLSAIDRSWAAGYVEHSTLAGPGLDG
                     LRAAASSLPAGFRHEWLRVLSEDELVVVHGLYHGLGPVPIVGCDLWRVADGKIVEHWD
                     ARQPWADQTVSGHTMTDGPATVTEPDKTAASRKLVGQFVELIMMGGDRTQITRFFDGD
                     RFIQHNPQIGDGVSGLGQAIQAGVWAAVVERVHHIVAEGEFVFTQGEGVLHGVPTAFY
                     DLFRVENDKLAEHWDIVFAKPDSLPHSNGLF"
     gene            complement(1355..>2084)
                     /locus_tag="VGN19_11385"
     CDS             complement(1355..>2084)
                     /locus_tag="VGN19_11385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196534.1"
                     /translation="ALQADANHHVTVVAASGDTGAAGEPCALIDALGGSMSGFTPRKE
                     VNLVTADPLVLSAGGTTLDASHTTGAWTGETAWGLPDGNPGGSFQASGGGFSHLFHRP
                     SYQTGVQGIGSMRGIPDVAADGDSVTGIAVITSNTGGGYTLSGHAGTSASAPLWAGII
                     ALADQYAQRHLGFVNPAIYQIARTSQYHQAFHDVTAGPSNTAQFPPTTITGYRPGPGW
                     DPVTGWGSPDAQVLVPLLARYATP"
BASE COUNT          340 a          650 c          761 g          333 t
ORIGIN      
        1 gactgcggct ggcgtgctcg cggcactgag gacgagcttg tcgccgccgc ccaggaacac
       61 ggccgcacgg ctcatgacat ggtgcccacg cgcgagcagg cgctggccac cgcgaagccc
      121 gtcccgacgg aggagtgacc gatgaagacg atccaccacg tgttcgagat cgcggcgcca
      181 cccggaaagg tcttcgccgc gctgacgacc agcgaggggt tgtcaggatg gtggaccacg
      241 aaggtgtcag cgaaggctga gatcggcgcg gtcgtggatt tcaccttcgg cggtgatttc
      301 aaccccgaca tgcgggtcac cgagctcgac ccgcccggcc tagtgggctg ggagtgcgtg
      361 ggaggtcatg agccgtgggc tgaaaacacc ttccgcttcg agctagaaga gaaaggcact
      421 ggcactgtcg tccggttctg gcagaactat gcacgcgagc tgagcgacga cgcctacggc
      481 acctacaact tcaactgggg ctattacctg gaaagcctgc gcctgctcgg cgaaaccggg
      541 accggcaagc ccttccaggc cgcccagtga ccgcgaagaa cctcgtgctg cacgcaacga
      601 ccgaactgtt cggccaccgc gacctcagcg ctatcgaccg gtcctgggcg gcgggctacg
      661 tcgagcactc gacgctcgcc gggcctggcc tcgacggatt gcgcgcggcg gcgagcagcc
      721 ttccggccgg cttccgccat gaatggctgc gcgtcctcag cgaggacgaa ctggtcgtgg
      781 tgcatggcct gtatcacggg ctcggtcccg tcccgatcgt gggatgcgac ctgtggcgag
      841 tggcggacgg caagatcgtc gaacattggg acgcgcgtca gccgtgggcc gaccagacgg
      901 tgtcggggca caccatgacg gacgggcccg cgacggtgac ggaaccagat aagaccgccg
      961 ccagcaggaa gctggtcggg cagttcgtcg agctgataat gatgggcgga gaccggacgc
     1021 agatcacccg attcttcgac ggcgaccgct tcatccagca caacccccag atcggcgacg
     1081 gcgtgagcgg tctcggccag gcgattcagg ccggcgtatg ggcagccgtt gtggagcgag
     1141 tgcaccatat cgtcgccgag ggggagttcg tcttcaccca gggcgaggga gtcctgcacg
     1201 gcgtcccgac cgcgttctat gaccttttcc gcgttgagaa cgacaagctc gccgagcact
     1261 gggacatcgt ctttgccaag cccgactccc tgccgcacag caacgggctt ttctgacgct
     1321 ggctacgtaa tcgcatgcga gtcgacagcc gctgtcatgg ggtggcatac cgggcgagta
     1381 gcgggacgag gacctgggcg tcggggctgc cccagccggt gaccgggtcc cagcctgggc
     1441 ctggccggta gccggtgatc gtcgtggggg ggaactgggc cgtgttgctg ggaccggcgg
     1501 tgacgtcgtg gaaggcctga tggtattgcg aggtgcgggc gatctggtag atggccgggt
     1561 tgacgaagcc gaggtggcgc tgggcgtact ggtcggcgag ggcgatgatc ccggcccaca
     1621 aaggcgcgct cgcgctcgtg ccggcgtgcc cgctgagcgt gtagcctccg ccggtgttgc
     1681 tcgtgatgac cgctatcccg gtgacggagt cgccgtccgc ggcgacgtca gggatgccgc
     1741 gcatggagcc gatgccctgg acgccggtct gataggaggg ccggtggaag agatggctga
     1801 accctccgcc cgatgcctgg aaggaaccgc cggggttgcc gtcgggaagc ccccaggcgg
     1861 tctcgccggt ccaggcaccg gtcgtgtggc tcgcgtcgag ggtcgtgccc ccggcactga
     1921 ggacgagcgg gtcggcggtg accaggttga cttcttttct gggggtgaag ccgctcatgc
     1981 tgccgccgag ggcgtcgatg agggcgcacg gctcccccgc cgcgccggtg tcacccgagg
     2041 ccgcgacgac ggtcacgtgg tggttggcat cggcttggag cgcg
//
LOCUS       DASYFY010000558         1585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_198341, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000558 DASYFY010000000
VERSION     DASYFY010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198341"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..201)
                     /locus_tag="VGN19_11390"
     CDS             complement(55..201)
                     /locus_tag="VGN19_11390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196535.1"
                     /translation="MIQHDNTDKTNTDKNRSAPYRGTRDLTATPMTATTVAGRREGGD
                     TRCS"
     gene            complement(357..599)
                     /locus_tag="VGN19_11395"
     CDS             complement(357..599)
                     /locus_tag="VGN19_11395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196536.1"
                     /translation="MQNITMTIDATHLSRVRSVCPEAGRVLLAGTRGWVQGSAVSAPM
                     TTSVVPVATKNPAIRVGYFGATIDDLAFRPFGEPPV"
     gene            complement(747..>1585)
                     /locus_tag="VGN19_11400"
     CDS             complement(747..>1585)
                     /locus_tag="VGN19_11400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEV7196537.1"
                     /translation="AAREQWESLAALAALADELVVAHPEARLPDFVRELDERAAAQHA
                     PAVRGVTLASLHAAKGLEWDVVFLVGCSDGYLPITMADTPEAIEEERRLTYVGVTRAR
                     QELRLSWAGARTPGARTTRRPSRFLDGAASILGEGARSQPKGGSAGGGRRGAKALKPA
                     LPSHCRGCATELTTASQRKTGRCDACPPAYDEATFERLRAWRLAVARETSVPAYVVFT
                     DATLTAIAEREPGSEGELAQISGVGVRKLGLYGTAVLALLGGASVDEVVERRSPATDS
                     AD"
BASE COUNT          225 a          517 c          587 g          256 t
ORIGIN      
        1 acgggatgcc agcgccggcg atcgcggcct gctggttcag gtcgtgcagt gcgctcaact
       61 gcatcgggtg tcacctccct ctcgtcgtcc cgccacggtg gtggcagtca tgggcgttgc
      121 ggtcaggtcg cgggtccccc gatagggggc cgaccggttc ttgtcggtgt tggtcttgtc
      181 ggtgttgtcg tgctggatca tctggtggtg cgtcttcctg ctgggtggtg cggaagttct
      241 gggtggatct gccgggacga acagggccgg gacgaacagg tccgggacaa acagaaaggc
      301 cgcggatccc ggatatcggg ttccgcggcc tcaagagggg cctgctggct ggtggcctag
      361 acaggtggct ctccgaaggg gcggaacgcg agatcgtcga tggtggcgcc gaagtagccg
      421 acgcggatgg ccgggttctt tgtggcgacg ggcacgacgg aggtcgtcat cggtgcggac
      481 acagcgctgc cctggaccca tccacgagtg cctgcgagga ggacacggcc ggcctcgggg
      541 cacacggaac ggacgcggga caggtgcgtc gcgtcgatcg tcatcgtgat gttctgcatg
      601 gggccaacct ccttctcggg tctcgtgggg gtttcagctc gtcgggcgcg acggctggac
      661 tgtgcgttcg tcaagggtag ggcagaggct gtgacggcgg caacgcattt atcgagattt
      721 cctttcacag aacggtgaac gtcaggctag tcggcggaat ccgttgcggg agaacgcctt
      781 tcgacgacct cgtccaccga ggcgccgccc agcagcgcca gcaccgcggt gccgtacagg
      841 ccgagcttgc ggacgccgac cccggagatc tgggccagct caccctcgga ccccggttca
      901 cgctcggcga tcgccgtgag ggtggcgtcc gtgaagacga cgtatgccgg gacgctggtc
      961 tcgcgtgcga ccgccagccg ccaggcccgc agtcgctcga aggtcgcctc gtcgtacgca
     1021 ggcgggcagg cgtcgcaacg ccccgtcttg cgttgggacg cagtcgtgag ctcggtggcg
     1081 cagccacgac agtgcgaggg cagggcgggc ttgagtgcct tggcgccacg ccgccccccg
     1141 cccgccgagc cgcccttggg ctgagaccgg gcgccctcac ccaagatgct ggcggcgccg
     1201 tccaagaacc gcgacggtcg acgtgtggtt cgggcccccg gagtcctggc gccggcccag
     1261 gacagccgca gctcttggcg ggcgcgggtc acgcccacgt aggtcagccg ccgctcctcc
     1321 tcgatcgctt ccggggtgtc ggccatggtg atcggcaggt agccgtcgga gcagccgacc
     1381 aagaacacga cgtcccactc cagccccttg gcggcgtgaa gcgaggccag cgtcacgccc
     1441 cggaccgcag gcgcgtgctg ggcggcggcg cgttcgtcga gctcgcgcac gaagtcgggc
     1501 agccgggcct cgggatgggc caccaccagc tcatcggcca gcgccgcgag cgcggcgagc
     1561 gactcccact gttcgcgcgc ggctc
//
LOCUS       DASYFY010000559         1553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_513919, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000559 DASYFY010000000
VERSION     DASYFY010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513919"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..119
                     /locus_tag="VGN19_11405"
     CDS             <1..119
                     /locus_tag="VGN19_11405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEV7196538.1"
                     /translation="RTEALSAQSAHIDLVSGATFTSEGYKTSLQAAIDAAHR"
     gene            complement(142..762)
                     /locus_tag="VGN19_11410"
     CDS             complement(142..762)
                     /locus_tag="VGN19_11410"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEV7196539.1"
                     /translation="MLVRELMTSPATSLRAGSRLESAVQVLAAQHISSVPIVDAYGHV
                     VGIVSEADVLGEGLPEDPRTHLRPTQQPTAPWHRLVDDVMTLDPVTVGAHTDAARAAE
                     LMADMGWKSLPVVRDRQLVGVISRSDVMRVLATPDAQVQQSIVYEFAQIGRDDWTVEV
                     VDGVVTLRDVAPGRETRLARAIAETLPGVRRVLVEEQAGSERADRP"
     gene            complement(819..>1553)
                     /locus_tag="VGN19_11415"
     CDS             complement(819..>1553)
                     /locus_tag="VGN19_11415"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196540.1"
                     /translation="LPDDAIETRTVTSGAANALIDASSEASLLVVGHRGHGVFVSAVL
                     GSVSAAVVQCAHCPVVVVRGSLEASAAQRPVTVGVDGTPESEAALLFAAQRAARDEVP
                     LRIVCAWLTLTQTGWEFANWQGDAIEEWARGLSASATHAADAALAKVRARWPELQVDT
                     RIVEAAPPLALEDASSDSRLVVVGSHGTSALGRLVLGSVSRTILHHAACPVAVVRPEG
                     RRPRLSPLVSPRARDRSPRLGDSAPR"
BASE COUNT          248 a          579 c          515 g          211 t
ORIGIN      
        1 tgcgcaccga ggcgctgagc gcccagtccg cgcacatcga cctagtcagc ggtgccacct
       61 tcaccagcga ggggtacaag acgagcctgc aagccgcgat cgacgcggct caccgctagg
      121 agccgggccg gtgcgggtcc gtcacggtcg atccgcccgc tccgatccgg cctgctcctc
      181 aaccagcacc cggcgcactc cgggcaacgt ctcggcgatc gctcgtgcca gtcgcgtctc
      241 gcggccaggg gccacgtcgc gcagggtcac cacgccgtcg accacctcca ccgtccagtc
      301 gtcccggcca atctgagcga actcgtagac gatgctctgc tgaacctggg catcgggggt
      361 ggccaggaca cgcatcacat cgctgcggct gatgacgccg acgagctgcc ggtcgcgcac
      421 gaccggcagg cttttccacc ccatgtccgc catgagctcg gccgcgcggg ccgcatccgt
      481 gtgcgctccc acggtgacgg ggtccagcgt catgacatcg tccaccagac ggtgccacgg
      541 ggctgtcggc tgctgggtcg gccgcagatg ggtccggggg tcctccggga gcccctctcc
      601 aagaacatca gcctcgctga cgatcccgac cacgtgaccg taggcgtcga cgatcgggac
      661 cgaactgatg tgctgagcgg ccaagacctg caccgcgctc tccagccggg aaccagcccg
      721 caggctggtc gccgggctgg tcatgagctc ccgaacgagc atgtcgacct cctcatggtg
      781 atatcgcgtc ctcctggtga cctcgcggcc gagttcggtc agcgcggagc gctgtcccca
      841 agtctcgggc tgcggtcccg cgcgcggggt gagaccaagg gactcaaccg tgggcggcgc
      901 ccttcaggtc gcaccacggc cacggggcag gcggcgtggt ggagaatggt gcgactcacc
      961 gagccgagaa ccagcctccc gagcgcgctg gtgccgtggg agccgaccac cacgagccgc
     1021 gagtcgctgg aggcatcctc cagcgccagc ggcggtgccg cctcgacgat gcgggtgtcg
     1081 acctgcagct ctggccagcg cgcgcgcacc ttcgccagag ctgcatccgc ggcgtgcgtt
     1141 gccgaggccg acagcccccg cgcccattcc tcgatagcgt cgccctgcca gttggcgaac
     1201 tcccacccgg tctgcgtcag cgtcaaccac gcacagacga tgcgcaaggg gacctcatcg
     1261 cgggccgcgc gctgtgcggc gaacagcagc gccgcctcgg actcgggagt gccgtcgaca
     1321 cccacggtca cgggccgctg cgccgcggac gcctcgaggg agccacgcac cacgaccacc
     1381 ggacagtgtg cgcactgcac gactgcggcg gacacagacc ccagaacagc agagacgaac
     1441 acaccatggc cgcggtggcc cacgaccagc aggctcgcct ctgacgaagc gtcgatcagg
     1501 gcgttcgccg cccccgaggt caccgtgcgt gtctcgatcg cgtcgtccgg cag
//
LOCUS       DASYFY010000560         6407 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_93531, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000560 DASYFY010000000
VERSION     DASYFY010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6407
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93531"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /gene="rbfA"
                     /locus_tag="VGN19_11420"
     CDS             <1..573
                     /gene="rbfA"
                     /locus_tag="VGN19_11420"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEV7196541.1"
                     /translation="GLIRVGVAGGETLRLRRVTPWLDAQLHTPRPLFALGGTHMADAG
                     RARKIADRIKTLIAANVASIVKDPDLGFITITDVRVTGDLQHASVFYTVFGDETQREK
                     TAALLEKNKGKLRSFVGHQIQIRLTPSLDFFADAIPETAAHLEDLLREAKDRDAAVAA
                     AAEGATYAGESDPYKKPEDAADLDDADARS"
     gene            560..1495
                     /gene="truB"
                     /locus_tag="VGN19_11425"
     CDS             560..1495
                     /gene="truB"
                     /locus_tag="VGN19_11425"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEV7196542.1"
                     /translation="MPAPDGLLVVDKPAGWTSHDVVGRARRLCGTRKVGHAGTLDPMA
                     TGVLVLGIGRATRLLTFLVGCDKEYIATIRLGQTTVTDDAEGEVTSSTPVEGLSDDAI
                     AAALATLTGAIDQVPSAVSAIKVNGERAYHRVRAGESVELTARRVTVSRFVVVARRDG
                     DAIPGIPGMPGMPVVDLDVEVTVSSGTYVRALARDLGRELGVGGHLTALRRTRVGAFT
                     LDGAHGLEDLGLLSGPEAMPVLQLAEAARSQFAVRELSAEESTAVGYGQRVDSLEAGR
                     TDPVAAFAPDGRLVAMLDESGHKAKAHVVFAPAGS"
     gene            1506..2465
                     /locus_tag="VGN19_11430"
     CDS             1506..2465
                     /locus_tag="VGN19_11430"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEV7196543.1"
                     /translation="MHRWTDPSETPDRLRPCVATFGNFDGVHLGHRAVLARLVQEGSS
                     RGLPSVAVTFDPHPASIFHPDTLELIAPAQLRDELLENTGIDGLLVLDFTREFAEQSA
                     EEFVVSTFVDTLAVQAIVVGQDARGFGRGYTGDVETLRQLGLAHGFDVVVLDDLGDTE
                     RWSSSAVRRHLAAGEVSAASAILGRPHRMTGTVVHGAHRGRELGYPTANLAADALGLV
                     PADGVYAGWLTRTSRPIDDPERTMPAAISVGTNPTFDGTVRTVEAYVLDRTDLDLYDE
                     EVLVEFVEHIRPTLRFDSIEELLVAMAGDIDTCRQVLASIVPS"
     gene            2528..3622
                     /gene="rodA"
                     /locus_tag="VGN19_11435"
     CDS             2528..3622
                     /gene="rodA"
                     /locus_tag="VGN19_11435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEV7196544.1"
                     /translation="MRWTQSDWGLVVAALGLSVVGALLVWSATRRLDGTAYLVRHLLN
                     TTIGVGLAVAVTRMGYQLLRALAPLLYLASLAGLVLVLTPVGSTVNGSHSWIQLPGGF
                     SVQPSEFAKVALALGLAIILGERLDRGARPDGRDLVVAALVCAVPVGLVMLQPDLGSA
                     LVLGALAFGVVAVSGVPARWLAAVVALVAAGIVAALTTPLLSAYQRDRLTAFAHPQAD
                     PQGFGYQTRQVRIAIGSGGWSGEGLFHGHQTQGGFIPFQQTDFVFSVAGEELGFLGAA
                     GLVMLLGFVVLRSVLVASRAQDAFGLLVGVGVAVWFLFQVFENVGMNLGLMPVTGLPL
                     PFLSYGGSSMFACWLAIGLVNNVQVSSRRT"
     gene            3748..5613
                     /locus_tag="VGN19_11440"
     CDS             3748..5613
                     /locus_tag="VGN19_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEV7196545.1"
                     /translation="MSTHAMPSPSAAAERVRHEVIDGRAPTVAHLFRDRVAATPDAEA
                     FRFPDGDQWASVTWGAVRERAYRWAAGLVALGVQPEDRVAIASSTRYEWVLADLAVMC
                     AGGATTTIYPTTIAPDVSYIVSNSGSLVVFAEDDAQIAKLTRSRIDLPEVARVVTFDG
                     TSDGDWVISVAELEDLGAQLLATAPAAVDERIDALTSDRLATIIYTSGTTGRPKGVRL
                     THDAWTYEAAAVDSTNILRADDLQYLWLPLAHVFGKVLLTLPLQIGFPTAVDGRVDKI
                     VDNLAVVHPTFMGAAPRIFEKAYARITTTVAAQGGPKAALFGWATRIGAIVADQRAAG
                     AQPSGLLAMQYAVADRLVLRTIRERFGGRIRFFISGSAALNHDIARWFDSVGLMVLEG
                     YGLTESSAATFVNRPATNRIGTVGWALPGTETRIAQDGEVLVRGPGVMQGYHGKPEDT
                     AQALDGDGWLHTGDIGTLDDAGYLRITDRKKDFFKTSGGKYVAPSLIESTFKGLCPYV
                     SQFMVYGADHNFVTALVTLDEEAIREWASAHGVAGSYAQIVSSPQATQMVQLYVDTLN
                     VNLNRWEQIKKFTILDHDLTIEDGELTPSLKLRRKAVSEKYQQTLDAPYLTGPKS"
     gene            complement(5702..6319)
                     /locus_tag="VGN19_11445"
     CDS             complement(5702..6319)
                     /locus_tag="VGN19_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010550285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HEV7196546.1"
                     /translation="MGPPSRAEQAMRCVPRRAFLPAAQQRHSERDVPLPIGHGQTNSQ
                     PTTVRRMLELLDVQPGDRVLDVGSGSGWTTALLAWLTGPNGHVFAVERHTDLAAFGAA
                     NVGSAGMPWAQVRLALPRVLGLPQHGPYQRILVSAQAHSLPGELVDQLAPRGVLVIPV
                     AGRMLRVVAGPDATLAPAVEEHGWYRFVPLVADPPLDPPAGPVVA"
BASE COUNT          916 a         2211 c         2280 g         1000 t
ORIGIN      
        1 ggcctgatcc gcgttggcgt agccggaggg gagaccctcc ggctacgccg ggtcacgcca
       61 tggctggacg cccagctcca cactcctcgc ccacttttcg ccctaggagg gactcacatg
      121 gctgacgccg gacgggcccg caagatcgcg gaccgcatca agacgctcat cgccgcgaac
      181 gtggcatcga tcgtcaagga tcccgacctg ggcttcatca cgatcaccga tgtccgggtc
      241 acgggggacc tgcagcacgc ctcggtcttc tacacggtct tcggggacga gacccagcgg
      301 gagaagacgg cagcgctgct ggagaagaac aagggcaagc tccggtcgtt cgtcggacac
      361 cagatccaga tccggctgac cccgagcctg gacttcttcg ccgatgcgat ccccgagacc
      421 gcggcccacc tcgaggatct gcttcgcgag gccaaggacc gcgacgccgc agtggccgcc
      481 gccgccgaag gtgccacgta tgccggggag tccgacccgt acaagaagcc cgaggacgcc
      541 gccgacctcg acgacgcgga tgcccgctcc tgacggtctg ctcgtcgtcg acaaaccggc
      601 gggctggacc agccacgatg tcgtcgggcg agcccggcgg ctgtgtggca cccgaaaggt
      661 cggccacgcc ggaaccctcg acccgatggc cacgggcgtg ctcgtgctcg ggatcggtag
      721 ggctacccgg ctgctgacct tcctggtcgg gtgcgacaag gagtacatcg ccacgatccg
      781 gctcggccag accacggtca ccgatgacgc ggagggcgag gtgacctcct ccaccccggt
      841 cgaaggcctg agcgatgacg cgatcgccgc tgccctggcg accctcaccg gcgcgatcga
      901 ccaggtgccc agtgccgtct cggccatcaa ggtcaacgga gagcgcgcgt accaccgcgt
      961 gcgcgccggg gagtcggtgg agctgacggc ccgccgcgtg acggtgagcc ggttcgtcgt
     1021 cgtcgcccga cgcgacggcg acgccatacc cggcataccc ggcatgcccg gcatgcctgt
     1081 ggtggacctg gacgtggagg tgacggtgag ctcggggacc tatgtccgtg cactggcccg
     1141 tgacctcggc cgcgagctcg gcgtcggcgg ccacctcacg gccctgcggc gcacccgcgt
     1201 gggcgccttc accctcgacg gggcgcacgg tctcgaggac ctgggcctgt tgtccggtcc
     1261 ggaagccatg ccggtcctgc agctcgccga ggcggcccgc tcgcagttcg ccgtgcgcga
     1321 gctgagcgcc gaggagagca ccgctgtggg ctacggccag cgggtcgact ccctcgaggc
     1381 gggacgcacc gatcccgtgg cggccttcgc cccggacggg cggctggtcg ccatgctcga
     1441 tgagtcgggt cacaaagcca aggcgcacgt cgtgttcgcg cctgccggtt cgtagagtgt
     1501 cctgcgtgca ccggtggacc gacccctcag agacgcccga caggcttcgg ccctgcgtgg
     1561 cgaccttcgg caacttcgac ggcgtccacc tcggtcaccg cgccgtcctg gcccggctgg
     1621 tccaggaagg gtcctcgcga ggtctgccta gcgtggccgt gaccttcgac ccgcatccgg
     1681 cgtcgatctt ccaccccgac accctcgagc tcatcgcgcc ggcccagctg cgcgacgagc
     1741 tgctcgagaa cacggggatc gacggacttc tggtattgga cttcacccgg gagttcgccg
     1801 agcagagcgc cgaggagttc gtggtcagca ccttcgtcga caccctcgcc gtgcaggcga
     1861 tcgtggtcgg ccaggatgca cgcggcttcg ggcgtggcta taccggcgac gtcgagacgc
     1921 ttcggcagct gggcctcgcc cacggtttcg acgtggtggt actggacgac ctcggtgaca
     1981 ccgagcggtg gtcctcctca gcggtgcgcc gacacctcgc agcgggagag gtgtcggcgg
     2041 cgtctgccat cctcggtcgt ccccaccgga tgaccggcac ggtcgtccac ggcgcccacc
     2101 gcggccgcga gctcggctac ccgacggcca acctggccgc ggacgccttg ggcctggtgc
     2161 cggcagacgg ggtgtatgcc gggtggctca cccgcacctc gcgaccgatc gacgaccccg
     2221 agcgaacgat gccggcggcc atctcggtgg gcaccaaccc gaccttcgac ggcaccgtgc
     2281 gaaccgtcga ggcctacgtc ctggaccgca cggacctcga cctgtacgac gaggaggtcc
     2341 tggtcgagtt cgtcgagcac atccgtccca ccctgcggtt cgactcgatc gaggagctgc
     2401 tcgtcgccat ggccggagac atcgacacgt gccgccaggt cctggcctcg atcgtcccct
     2461 cctgaggggc tgggcgaccg acccgcgctc gcggcccacg tggtgggcca gagccggcgg
     2521 cggagccgtg cgctggaccc agagcgactg gggcctggtg gtcgccgcgc tgggcctgtc
     2581 cgtcgtcggt gcgctcctgg tgtggtcggc gacgcgccga ctggacggca cggcatacct
     2641 cgtccgtcac ctgctgaaca cgaccatcgg ggtggggctg gcggtggcgg tgacccgcat
     2701 gggctaccag ctgctccgag ccctcgcgcc cctgctgtac ctggcgtctc tcgcggggct
     2761 ggtgctggtg ctgacgccgg tggggtcgac ggtcaacggc tcgcactcgt ggattcagct
     2821 gcctggtggg ttctcggtcc agccgtccga gttcgccaag gtcgcgctgg cgctgggtct
     2881 ggccatcatc ctgggcgaac ggctcgaccg aggcgcacga cccgacgggc gggacctggt
     2941 cgtcgcagcg ctggtctgcg cggtaccggt cgggctcgtc atgctccagc cggacctggg
     3001 ttctgccctg gtcctcggcg cactggcctt cggggtggtt gcggtgtcgg gcgtcccggc
     3061 ccggtggctc gcggccgtcg tcgcgctcgt tgccgccggg atcgtggctg ccctgaccac
     3121 gcctttgctc agcgcgtacc agcgcgaccg gctgacggcg ttcgcgcacc cgcaggcgga
     3181 cccgcagggc ttcgggtacc agacccggca ggtgcggatc gcgatcggct ctggtgggtg
     3241 gagtggcgag gggctgttcc acggacacca gacccagggc ggcttcatcc ccttccagca
     3301 gaccgacttc gtcttctcgg tggcggggga ggagctgggg ttcctcggcg cggcagggct
     3361 ggtgatgctc ctcggcttcg tcgtgctccg gtcggtcctg gtggcgtctc gggcgcagga
     3421 cgcgttcggt ctgctggtcg gggtcggggt cgccgtgtgg ttcctgttcc aggtcttcga
     3481 gaacgtgggc atgaacctcg gactgatgcc ggtcacgggt ctgcccctgc cgtttctctc
     3541 ctacggcggg tcgtcgatgt tcgcgtgctg gctggccatc ggtctggtga acaacgtcca
     3601 ggtctcctcg cgacggacct gagccaccag gcggccggcg cccgtgtcgt ttcgcgagat
     3661 tcgttcgcgg tcgcccggac gctgtgacac gatcccggca ttcacatcgt ccgggaccgc
     3721 agcagaaccg cagtggaggt gggtcacatg tcgacgcacg cgatgccgag cccttccgcg
     3781 gccgcggagc gggtccgtca cgaggtcatc gatggccggg caccgaccgt ggcgcatctg
     3841 tttcgcgatc gcgtggcggc gaccccggat gcggaggcgt tccggttccc cgacggcgac
     3901 cagtgggctt cggtgacgtg gggcgctgta cgagagcggg cctaccggtg ggccgctggg
     3961 ctggtggccc tgggcgtaca gcccgaggac cgcgtcgcga tcgcctcgtc cacgcgctac
     4021 gagtgggtgc tcgccgatct ggccgtgatg tgcgccggtg gggccacgac gacgatctac
     4081 ccgacgacca tcgctccgga cgtgtcctac atcgtgtcga actctggcag cctggtggtg
     4141 ttcgccgagg acgacgcgca gatcgccaag ctgacccgga gccggatcga ccttcctgag
     4201 gtggcccggg tggtgacctt cgacgggacc tctgacggcg actgggtcat ctccgtggcc
     4261 gagctcgagg acctgggcgc gcagctgctg gcgactgcgc ccgccgcggt cgacgagcgg
     4321 atcgacgcgc tcacgagtga ccggctggcc acgatcatct atacctccgg tacgacgggc
     4381 cgtccgaagg gcgtgcgcct gacgcacgac gcctggacct acgaggccgc ggccgtggac
     4441 tccacgaaca tcttgcgcgc cgacgacctg cagtacctgt ggctgccctt ggcgcacgtc
     4501 ttcggcaagg tgctgctgac gctgccgctg cagatcggct tccccaccgc tgtcgacggt
     4561 cgcgtggaca agatcgtgga caacctggcg gtggtgcatc cgaccttcat gggggccgcc
     4621 ccgcgaatct tcgagaaggc gtacgcacgg atcacgacaa ccgttgccgc gcaaggtggt
     4681 ccgaaggcgg cgctgttcgg gtgggccacc cggatcggtg ccatcgtggc cgaccagcgg
     4741 gcggcgggcg cgcagccctc cggcctgctc gcgatgcagt atgccgtggc cgaccggctc
     4801 gtcctccgca cgatccgcga acggttcggt ggccggatca ggttcttcat ctcggggtcg
     4861 gccgcgctga accacgacat cgcccgatgg ttcgactccg tcgggctcat ggtgctggag
     4921 ggctatggcc tgaccgagag cagcgcggcc acgttcgtca accgcccggc caccaaccgc
     4981 atcggcaccg tgggatgggc actgccaggc acggagaccc ggattgcgca ggacggcgag
     5041 gtcctggtcc gcggtccagg cgtcatgcag gggtaccacg gcaagcccga ggacaccgcc
     5101 caggctctgg acggggacgg ctggctgcac acgggcgaca tcgggacgtt ggacgacgcc
     5161 ggctacctgc gcatcaccga ccgcaagaag gacttcttca agacctcggg cggcaagtac
     5221 gtggcgccgt cgctgatcga gtcgacgttc aaaggcttgt gtccgtacgt cagccagttc
     5281 atggtctatg gcgccgacca caacttcgtg acggccctgg tgaccctcga cgaggaggcg
     5341 attcgggagt gggccagcgc ccacggggtc gccggcagct atgcccagat cgtgtcgtcg
     5401 cctcaggcga cgcagatggt ccagctgtac gtcgacaccc tcaacgtcaa cctcaaccgc
     5461 tgggaacaga tcaagaagtt cacgatcctg gaccacgacc tcaccatcga ggatggcgag
     5521 ttgaccccta gcctcaagct gcggcgcaag gccgtcagcg agaagtacca gcagaccttg
     5581 gacgctccgt acctcaccgg cccgaagagc tagccgaccc gggctgggcg accgggctag
     5641 gcgaccgggc tgggcgaccg ggctgggcga ccgggctggg cgaccgggct gggcgaccgg
     5701 gctaggcgac cacgggtccg gccggcggat ccagcggtgg gtcggccacc aagggcacga
     5761 accggtacca cccgtgctcc tccacggccg gggccagggt cgcgtcgggg cccgcgacga
     5821 cccgcagcat gcgccccgcg accgggatga ccaggacccc gcgcggcgcg agctggtcga
     5881 cgagctcgcc cggtagcgaa tgggcctgcg ccgacaccag gatccgttgg tacggcccgt
     5941 gttgaggcag tccgagcacg cgggggaggg cgagtcgcac ctgcgcccac ggcatacccg
     6001 cggatcccac gttggcggcg ccgaaggccg cgaggtcggt atggcgttcc acggcgaaga
     6061 cgtggccgtt ggggccggtg agccaggcga gcagggctgt ggtccagccg gacccgctcc
     6121 cgacgtcgag cacccgatcg ccaggctgga cgtccagcag ctccagcatc cgccgcaccg
     6181 tggtgggctg actgttggtc tggccgtgcc cgatcggcag cggaacatcg cgttcgctgt
     6241 ggcgctgctg cgcagccggg aggaaagcgc ggcggggcac gcaccgcatg gcctgctccg
     6301 cgcgactggg cgggcccatc tgaccagtat gccgccgggt ggcgttcgtg agagcgctct
     6361 caggaagcgc tgggctggtt ctcaagtggt gcgtgagaaa ctatgcc
//
LOCUS       DASYFY010000561         4932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_304152, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000561 DASYFY010000000
VERSION     DASYFY010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4932
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304152"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /gene="ccsB"
                     /locus_tag="VGN19_11450"
     CDS             <1..771
                     /gene="ccsB"
                     /locus_tag="VGN19_11450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HEV7196547.1"
                     /translation="PPADADVPLRARKAAGIASTTTWLGGFLLVCSVALRGLAVHRWP
                     LGNMFEFAVMLSTFIVMAFSIWSTRRDLRWLGLFITGPVLLVLGMAVMVWYTEAAELM
                     PSLKSYWLMIHVTVAVLATAVFTLGAAATAVYLLKDAVQRSGRASVLDRFPETPALER
                     TAYGLHIVAFPLWTFTLIAGAIWARQAWASYWNWDPKEVWTFVIWVVYAAYLHSRATS
                     GVTRQTVSYIALAGYACIIVNFAVVNVFFVGQHSYSGL"
     gene            776..1066
                     /locus_tag="VGN19_11455"
     CDS             776..1066
                     /locus_tag="VGN19_11455"
                     /inference="COORDINATES: protein motif:HMM:NF025378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4229 domain-containing protein"
                     /protein_id="HEV7196548.1"
                     /translation="MVRYSLLRVLMFFGVLSALWLAGLRSASQQIPLLVLSALISMVL
                     SYFVLRRFRVESTQQIAAAVERRAAARQAKAPDSDEAAEDLEAEGGGPAEYR"
     gene            complement(1119..1544)
                     /locus_tag="VGN19_11460"
     CDS             complement(1119..1544)
                     /locus_tag="VGN19_11460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196549.1"
                     /translation="MDRGIYDCGSSADYGVACWQATVRATMYCLQNPFGKQLAQLPLA
                     DTSLPDAPAPVVASPLALILDDGARCLIRDGGSWSHLPGHPGWFGTYGCDAPNDQIVW
                     APSASDGVNRANSTWTVKSTGRSTTLVSHAVTVAYFAGN"
     gene            complement(1630..1839)
                     /locus_tag="VGN19_11465"
     CDS             complement(1630..1839)
                     /locus_tag="VGN19_11465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196550.1"
                     /translation="MWCVTAEPGPSPSTALDVAPDVTPDVTPDVTLDVAPERVPDHDT
                     DRPGPGRVERHPESARHAGRRAAPR"
     gene            complement(2072..2947)
                     /locus_tag="VGN19_11470"
     CDS             complement(2072..2947)
                     /locus_tag="VGN19_11470"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0046428 - 1,4-dihydroxy-2-naphthoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEV7196551.1"
                     /translation="MATLSQWVAGARPRTLPAAVAPVVIGTAAAVPLERANLGLGLLA
                     LLVSLGLQVGVNYANDYSDGIRGTDSERVGPVRLVGQHLANAENVKLMAFAFFGFAAL
                     VGLALVALSQAWIMIVLGALAVIAAWRYTGGTKPYGYRGLGELFVFVFFGLVATLGTL
                     YTQAHRLTATGVAGAVGVGAIASAILVANNLRDIPTDRASGKRTLAVRLGDQRTRAFY
                     LGLVAVSIAMVLVVALQHPFALIALLALGLLWKPVQLLRSGATGRALVQVLAGTGVYE
                     IAYAVLLAVGIALSS"
     gene            complement(2986..3249)
                     /locus_tag="VGN19_11475"
     CDS             complement(2986..3249)
                     /locus_tag="VGN19_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLD nuclease N-terminal domain-containing
                     protein"
                     /protein_id="HEV7196552.1"
                     /translation="MIRLLPWLLTIALAVYALVDCAQTPPTRVRTLPKLVWLVLIVAF
                     PLLGSIAWLVLGRANGSTVWRGRTHPSDRPRGPDDDPDFLRRL"
     gene            complement(3246..4418)
                     /gene="menE"
                     /locus_tag="VGN19_11480"
     CDS             complement(3246..4418)
                     /gene="menE"
                     /locus_tag="VGN19_11480"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HEV7196553.1"
                     /translation="MTSLRHLAIQPGPAALAALHTLRRALEGELAVLPYAAGTIPPSV
                     PDGALPDEGTALVVGTSGSTGIPKLAMLPAHALRASATATHERLGGPGSWLLAMPAHH
                     IAGVQVLLRCLAAETEPHVMNLTDGFQTAAFAEAVRALAGGRRYTSLVPTQLVRVLAD
                     TDAARAAAELDAVLVGGAASSPGLLRQAREAGLRVVTTYGMSETSGGCVYDGLPLSGT
                     TIRVDDGGRIQLGGDTLATGYLGRPDLTSRAFHSDDAGRRWFRTDDLGHQDPRGRWHV
                     DGRLDDLIITGGLKVAPRVVEEALVEHVGGVAEAVVVGIADEEWGQVVCAAVTSADGD
                     QEPTVAQARAVLRGILPDHALPRRLLVLTTLPLRGPGKPDRQAIRAALVARATMDP"
     gene            4489..>4932
                     /locus_tag="VGN19_11485"
     CDS             4489..>4932
                     /locus_tag="VGN19_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEV7196554.1"
                     /translation="MDADFAAYLERIRAHRSELRESIGAVDEALASPIARGGAWRERV
                     RAALAELSHDFEEHIRLTEGPGGLYESVRHGDPRLEGRVRRLMREHQRYREDLSAYLT
                     VLEHGGTMADLPVFREEVTTLMGQLVRHRQKGADLVFEAYDVDLGG"
BASE COUNT          743 a         1696 c         1771 g          722 t
ORIGIN      
        1 ccccctgccg acgccgacgt gcccttgcgg gcccgcaagg ccgcaggcat cgcgtccacg
       61 acgacctggc tgggcggttt cctgctcgtg tgctcggtgg cgctgcgggg tctggccgtc
      121 caccggtggc cgctggggaa catgttcgag ttcgcagtga tgctctcgac gttcatcgtc
      181 atggcgttct cgatctggtc cacccgccgt gacctgcgct ggctggggct gttcatcact
      241 ggtccagtgc tgctggtcct cggcatggca gtgatggtct ggtacaccga ggccgccgag
      301 ctcatgccct ctctgaagag ctactggctg atgatccacg tgaccgtcgc cgtgctcgcc
      361 accgccgtgt tcacgctcgg tgcggccgcc accgccgtct atctgctcaa ggacgctgtc
      421 cagcggtcag ggcgcgccag cgtgctggac cgcttccccg agacgcctgc gctcgagcgg
      481 accgcctatg gactgcacat cgtggcgttc ccgctctgga ccttcaccct gatcgcaggg
      541 gccatctggg cccgccaggc ctgggcctcg tactggaact gggaccccaa agaggtctgg
      601 acgttcgtga tctgggtggt ctacgcggca tacctgcact cgcgggccac cagcggtgtg
      661 acccgtcaga ccgtcagcta catcgcgctg gccggctacg cctgcatcat cgtcaacttc
      721 gccgtggtca acgtcttctt cgtcggccag cactcgtact cagggttgta gatccatggt
      781 tcgttactcg ctgctgcgcg tgctgatgtt cttcggagtc ctgtcagcgc tgtggctggc
      841 cggactgcgt agcgccagcc agcagatccc gctcctcgtg ctgagcgctc tcatctcgat
      901 ggtgctgtcc tacttcgtgc tccggcggtt ccgcgtggag tccacccagc agatcgcggc
      961 cgccgtcgag cgtcgggccg ccgcccgcca ggccaaggcg ccggactccg acgaagccgc
     1021 cgaggacctc gaggccgagg gcggcggacc agccgagtac cgctaagtcg gatctccgtc
     1081 gacgacgaca aggcacggtt cgatgaccag cccgtaggtc agttgccggc gaagtaggcg
     1141 accgtcacgg cgtgcgagac cagggtggtc gaccttccgg tgcttttgac cgtccacgtc
     1201 gagttcgcgc ggttgacgcc gtcgctggcg ctgggcgccc agacgatctg gtcgttcggg
     1261 gcgtcgcacc cgtacgtgcc gaaccagccg gggtgcccag gcaggtgcga ccatgagccg
     1321 ccgtcgcgga tcaggcagcg cgcgccgtcg tccaggatca gggcgagcgg cgatgccacg
     1381 accggcgccg gggcgtccgg cagggaggtg tcggccagcg ggagctgggc cagctgcttg
     1441 ccgaacgggt tctgcaggca gtacatcgtg gcccggacgg tcgcctgcca gcacgcaacc
     1501 ccgtagtcgg ccgagctgcc gcagtcgtag attcctcggt ccacggcgcc tcgagagacc
     1561 ccgttgcacc cgttcagacc atgcccgggc acgggcgtgg ccacgaagcc gttcgcgggc
     1621 ttcccttgct caacggggcg cagcacgacg acccgcgtgg cgggccgact ccgggtgccg
     1681 ttcgacgcgg ccggggccgg gacggtctgt gtcgtggtcg gggacgcgtt cgggggcgac
     1741 gtcgagggtg acgtcggggg tgacgtcggg ggtgacgtcg ggggcgacgt cgagggcggt
     1801 gctggggctg gggccgggct cggcggtgac gcaccacaac cggcaagtcc gaggacggcg
     1861 acggccatca gggcaccgac acaacgcata gcgctcactc cacagtgacg cacgagtgtg
     1921 gcgtgtgtga cgaccgttcc agccgaacgg ggggacgagc agcctcgagc gtgtcccttt
     1981 gaacgcggag cgtcatccgc cacccggtat cggggggagg catgccgcga tttcgcgacg
     2041 ctccgccccg gtccgggcaa gccgcgattg ctcagctgct gagggcgatc ccgacggcga
     2101 gcagcacggc atacgcgatc tcgtagacgc cggtcccggc gagcacctgc accaacgcgc
     2161 gccccgtggc acccgagcgc agcagctgca ccggcttcca cagcaggccg agagcgagca
     2221 gcgcaatcag cgcgaacgga tgctgcaggg cgaccaccag gaccatggcg atcgacaccg
     2281 cgaccagtcc gagatagaac gcgcgggtgc gctggtcgcc cagccgcacc gcgagcgtgc
     2341 gcttcccact cgcgcggtcg gtggggatgt cgcgcaggtt gttcgcgacg aggatggccg
     2401 aggcgatcgc tccgaccccc accgcgcccg cgacgcccgt cgcggtcaac cggtgcgcct
     2461 gcgtgtagag cgtgcccagg gttgcgacca gcccgaagaa gacgaagacg aagagctccc
     2521 cgagcccgcg atagccatag ggcttggtcc ccccggtgta ccgccacgcg gcgatgacgg
     2581 caagcgcgcc gaggacgatc atgatccagg cctggctcag agcgaccagg gcgagaccga
     2641 cgagcgccgc gaagccgaag aaggcgaacg ccatgagctt gacgttctcg gcgttggcca
     2701 ggtgctggcc gaccaggcgc accgggccga cccgctcgct gtccgtgccc ctgatgccgt
     2761 cggagtagtc gttggcgtag ttgacgccga cctgcaaacc cagggacacc aacagggcga
     2821 gcagcccgag cccgaggttg gctcgttcga ggggcacggc cgcggcggtg ccgatgacga
     2881 cgggggcgac ggcggcgggc agggtgcgcg ggcgggcgcc ggcgacccac tgagacagag
     2941 tggccatgac ggagtgcggt tctcgctctt ctgagggggt ggtggctaga gcctacggag
     3001 gaagtccggg tcgtcgtcgg ggccacgcgg gcggtcggag gggtgagttc gcccacgcca
     3061 cacggtgctg ccgttggccc tgcccaggac gagccaggcg atcgacccca gcagcgggaa
     3121 ggccacgatc agcaccagcc acacgagttt gggcagcgtc cgaacccggg tcgggggagt
     3181 ctgggcacag tcgacgaggg cgtacacggc cagcgcgatc gtcagcagcc acgggagcag
     3241 ccggatcatg gatccatggt ggcacgcgcc accaacgccg cccgaatcgc ctgacggtcc
     3301 ggcttgccgg gaccccgcag cggaagcgtg gtgagcacga gcagtcgccg gggcagggcg
     3361 tggtcgggga ggatgccgcg cagcaccgcc cgagcctgcg cgacggtggg ctcctggtcg
     3421 ccgtccgcgg acgtcacggc ggcgcagacc acctgccccc actcctcgtc ggcaatgccg
     3481 accacgaccg cctccgcaac gccaccgacg tgttcgacca acgcctcctc gaccacgcgt
     3541 ggcgccacct tgaggccgcc cgtgatgatc aggtcgtcga gtcgaccgtc cacatgccag
     3601 cgtccccgcg gatcctggtg acccaggtcg tcggtgcgaa accagcggcg accggcgtcg
     3661 tcgctgtgga aagcccggga ggtgaggtcc ggtcggccga ggtacccggt ggccagggtg
     3721 tcgcccccca gctggatcct gccaccgtcg tcgacccgga tcgtcgtgcc gctcaacgga
     3781 aggccgtcgt agacgcaccc gcccgaggtc tcgctcatcc cataggtcgt cacgactcga
     3841 aggcccgcct cccgagcctg ccgcagcaga cccgggctgc ttgcggcacc tccgaccagg
     3901 accgcatcca gctcggcagc ggcccgggcg gcgtcggtgt ccgcgagcac ccgcacgagc
     3961 tgcgttggca ccagggaggt gtagcggcgc ccgcccgcga gcgccctgac cgcttcggcg
     4021 aatgcggccg tctggaaccc gtcggttagg ttcatgacgt gcggttcggt ctcggccgcc
     4081 aggcagcgaa gaaggacctg gacgcccgcg atgtggtggg ccggcatggc gagcagccac
     4141 gagccggggc caccgagccg ctcgtgggtg gccgtggcac tggcccgcag ggcgtgggcc
     4201 ggcaacatgg ccagcttcgg tatgccggtc gagccggagg tcccgaccac caaggcggtg
     4261 ccctcgtcgg ggagggcgcc gtcggggacg ctcggcggaa tggtccccgc ggcatacggc
     4321 aggacggcga gctcaccttc cagcgcccga cgcagggtgt gcagcgcggc gagcgcggca
     4381 ggcccgggct ggatcgccaa gtgccgcagg gaggtcacgt cgccaggcta gccactgtgc
     4441 tctggacgac tgacccgcgg gactggatca tgacctcagg aggtgctcat ggacgccgac
     4501 ttcgcggcat acctcgagcg tattcgtgcc catcgctccg agctgcgcga gtcgatcggt
     4561 gccgtcgacg aggcgctcgc ctcccccatc gcccgcggtg gagcctggcg cgaacgggtt
     4621 cgcgctgcgc tcgcggagct gtcccacgac ttcgaggaac acatccggct caccgaaggc
     4681 cccggcgggc tgtacgagag cgtgcgccac ggcgacccac gactcgaggg tcgggtacgg
     4741 cggctgatgc gcgagcacca gcggtaccgc gaggatctct ccgcctatct caccgtcctc
     4801 gaacacggcg gcacgatggc cgacctgccg gtcttccgcg aagaggtgac gacgttgatg
     4861 ggccagctgg tccggcatcg gcagaagggg gccgacctgg tcttcgaggc atacgacgtc
     4921 gacctgggtg gc
//
LOCUS       DASYFY010000562         2104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1512808, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000562 DASYFY010000000
VERSION     DASYFY010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1512808"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VGN19_11490"
     CDS             <1..470
                     /locus_tag="VGN19_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020013735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEV7196555.1"
                     /translation="EGIRFWHPGGTLDSLVLETDVHPGFMTDWQQPLVVALTQTSGLS
                     IVHETVYENRLGFTEALAEMGAVIQLYRECLGGSPCRFGRANFRHSAVVSGPTPLKGA
                     EITVPDLRGGFSYLIAALAAEGQSKVHGIELIYRGYERFSEKLDALGADYEVG"
     gene            complement(566..1423)
                     /gene="cofC"
                     /locus_tag="VGN19_11495"
     CDS             complement(566..1423)
                     /gene="cofC"
                     /locus_tag="VGN19_11495"
                     /EC_number="2.7.7.68"
                     /inference="COORDINATES: protein motif:HMM:TIGR03552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043814 - phospholactate
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate guanylyltransferase"
                     /protein_id="HEV7196556.1"
                     /translation="MTGTVSWQLVVPVKGGRLAKSRLHPPSGVAREELARALAADCLA
                     ACCAGMPPERVFVVTSDADVAALATALGARVVPDPGRGLDAAAVAGRDAAAAQDPDAA
                     VGVLLGDLPALRQEDLMAALDAAAAYPLAIVPDADGTGTVLLTSLSAPRLAPAFGAGS
                     AARHEAGGHTRLDLPLARLRTDVDDDRGLAAAQALGVGPSTAAVLRSGTATLPRMQAS
                     VHTFDETSGAGSVLLDDGREVAFSADTFAGSALRHLRPGQRLSIELGSDGLVSRLWIV
                     GIGEGQRIG"
     gene            1540..>2104
                     /locus_tag="VGN19_11500"
     CDS             1540..>2104
                     /locus_tag="VGN19_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEV7196557.1"
                     /translation="MTASGKRPLPFAYRFAVGLLRPVLMTVTKRDWHGAENLPRTGGF
                     VVTPNHLSHIDPLTFAHFLYDNGREPYFLGKEGVFRVPVVGAILRGAEQIPVYRNTGQ
                     AADAFRAAVAAVNEGKCVAVYPEGTLTRDPELWPMVGKTGAARIALVTRCPVIPVAQW
                     GPQAILEPYSKRPRLFPRKTIHVSAGPA"
BASE COUNT          315 a          777 c          732 g          280 t
ORIGIN      
        1 acgagggcat ccgcttctgg cacccggggg gcaccctcga ctcgctggtg ctcgagaccg
       61 acgtccaccc ggggttcatg accgactggc agcagccgct cgtcgtggcc ctgacgcaga
      121 cctcgggcct gtcgatcgtc cacgagaccg tctacgagaa ccgcctgggc ttcaccgagg
      181 cgctggccga gatgggcgcg gtgatccagc tctaccgcga gtgcctcggc ggctcgccgt
      241 gccgcttcgg ccgcgcgaac ttccgccaca gcgccgtcgt gtcaggcccc acgccgctca
      301 agggcgccga gatcacggtc cctgacctcc gcggcggctt cagctacctc atcgccgcgc
      361 tggcggcaga ggggcagtcc aaggtgcacg ggatcgagct catctaccgc gggtacgaga
      421 ggttctcgga gaagctcgac gccctcgggg cggactacga ggtcggctga cctgcctggt
      481 gcatgaggtc ggctgacctg gctggacgat gaggtcggct gacctggctg cgcgagggcg
      541 cccgcgctga cctcccgacc ggcgttcagc cgatccgctg gccctcgccg atccccacga
      601 tccacaggcg ggacaccagg ccgtcactgc cgagctcgat gctcaggcgc tgaccgggac
      661 gcaggtgacg cagcgcgctc cccgcgaacg tgtccgcgct gaaggcgacc tcacgtccgt
      721 cgtcgagcag cacggagccg gcaccactgg tctcgtcgaa ggtgtgcaca ctggcctgca
      781 tacggggcag cgtagccgtg ccgctgcgca ggacggccgc ggtcgaggga cctaccccca
      841 gcgcctgggc ggcggccagg ccacggtcgt cgtcgacgtc ggtgcgcaac cgggcgaggg
      901 gcaggtcgag cctcgtgtgc ccccccgcct cgtggcgcgc agccgaaccc gccccgaacg
      961 ccggggccag ccgaggtgcg gacagggacg tgagcaggac cgtaccggtg ccgtcggcgt
     1021 ccggcacgat cgcgaggggg tatgccgcag ccgcgtccag cgctgccatg aggtcctcct
     1081 ggcgcagggc agggaggtcg ccgagcagca cgcccaccgc cgcgtcggga tcctgcgcag
     1141 ctgccgcgtc cctgccggcc accgccgcgg catccaggcc tcggccgggg tcgggcacca
     1201 cccgggcacc cagagctgtc gcaagggccg caacgtcggc atcggaggtc acgacgaaga
     1261 cccgctccgg cggcataccg gcgcagcagg cggcaaggca gtcggcagcg agggcacgag
     1321 cgagctcctc ccgcgcgaca ccgctgggag ggtgcagccg ggacttggcg aggcgcccgc
     1381 ccttgacggg gaccacgagc tgccacgaaa cggttccggt catcgccacg atcgttgcag
     1441 gcagggcgtc gttgctcgac accgcccctg caacccgcga ggatgctcag gcggggccgt
     1501 cccgcactga ccccgacccg atccccgacg ggagaacacg tgaccgccag cggcaaacgt
     1561 ccgttgccct tcgcataccg ctttgcggtg gggctgctgc gaccggtgct catgacggtc
     1621 accaagcgcg actggcatgg agcggagaac ctgccccgga ccggcgggtt cgtggtcacc
     1681 ccgaaccacc tctcgcacat cgacccgctg accttcgccc acttcctcta cgacaacggg
     1741 cgggagccct acttcctggg caaggagggt gtcttccggg ttcccgtggt gggcgccatc
     1801 ctgcgcggcg ccgagcagat ccccgtctac cgcaacaccg gacaggctgc cgacgccttc
     1861 cgcgcggcgg tcgctgccgt caacgagggc aagtgcgtgg ctgtctatcc cgagggcaca
     1921 ctgacccgcg accccgagct ctggccgatg gtcggcaaga cgggagccgc ccgcatcgcg
     1981 ctggtgacga gatgccccgt gatccccgtg gcccagtggg ggcctcaggc catcctcgag
     2041 ccatactcca agcggccgcg gctgttcccc cgcaagacga tccacgtcag cgcggggccg
     2101 gctg
//
LOCUS       DASYFY010000563         3803 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1671033, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000563 DASYFY010000000
VERSION     DASYFY010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3803
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1671033"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            212..1498
                     /locus_tag="VGN19_11505"
     CDS             212..1498
                     /locus_tag="VGN19_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018775293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEV7196558.1"
                     /translation="MGTAVFVAVEFSLVALDRPTVQRAVDSGDVRAEVVLGSLRRLST
                     QLSAAQVGITLTTLVFGFLSTPALATLLRSPLGATGLHGGTLTSLSAVLSLVIATVFS
                     MVFGELLPQFLGISAPLPTAKVVALPVRLFAVVVRPLIVVLNGSANAFLRGLGITPRE
                     ELSGARTPQELASLVRRSAAAGTLDEGTARLVTRSLRFGEQTAADVMSPRPRATSIER
                     TATAEEVLQLARRTGHSRFPVTGEDWDDIDGVVHVKRAIAVPHDRRADVPVSALMVPP
                     LLVPETIRLDPLLLLLREHGLQLAIVVDEYGGTAGVVTLEDVVEEIVGEVSDEHDLFR
                     TTGREFTDGSWTVPGLWRPDEVRERLGAVIPEGPAYETTGGFVMAALGHIPVVGDTVS
                     IPGWEISVIAMDGMRADRLRFVPTGDAPDDQPADES"
     gene            1495..2529
                     /locus_tag="VGN19_11510"
     CDS             1495..2529
                     /locus_tag="VGN19_11510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEV7196559.1"
                     /translation="MNALAVWTTVVLLLLNAFFVGAEFAAMAARRSSLEPLAAAGSRR
                     AQVCLHALEQMGSLLACAQLGITLCSVLLGAISEAALHHALEPVARGLGIPTSVADGV
                     ALALALLVIVYLHVVVGEMIPKNLGLAGPERAALLLVPALLYVTRALRPVIRVMEALA
                     KGLVRLFGVEPKDELTSAFTVDEVEHILDESHHEGLIEEGQHGLVGAALEFSDKNAGD
                     VAVSLTSLVTLPLTATPDDVERLVAKRGFSRYPLVDRSGTLAGYLHLKDVLYADDAER
                     GLPVPVKRVRKLATVQAADEVEEVLRTMQRTGAHLARVVDPDGAARGVVFLEDVIEEL
                     VGEVTDASQR"
     gene            2685..3578
                     /locus_tag="VGN19_11515"
     CDS             2685..3578
                     /locus_tag="VGN19_11515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196560.1"
                     /translation="MPRVPLPDSLGDAFTVAEGARAGLGEARMYGPDLSRPTHGVRAT
                     REPTTLRDLAATTALALPDDSAFSHRTAARLWGLPLPEADPQELASPLDVMRPSSSAR
                     IRRAGCHGRRGLESREVQLHRGVRVTSLADTWCDLGEVLDLDDLVVVGDAVARRLQGP
                     GDLHVALRRRVRPRGAVGLRRALSLVRPGSDSPMETRCRLLFHRSGLPEPELNGVISH
                     GHGGGFLCRSDFVWRAKRVIAEYQGADHFGGFERGDDDISRRLLAEDDGWKYVELTKR
                     DYFHRGRRAQLLARLAAYLLD"
     gene            complement(3653..3724)
                     /locus_tag="VGN19_11520"
     tRNA            complement(3653..3724)
                     /locus_tag="VGN19_11520"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3689..3691),aa:Arg,seq:ccg)
BASE COUNT          514 a         1314 c         1333 g          642 t
ORIGIN      
        1 gaaagagcgc ccaaagcatg cggtcggcag cctccagcgc gggaccgagt tccatttcga
       61 acgtcgctac gcggacaata ggacgcgttg tgtcaccgtc aacgtaatcc gggacgaccc
      121 ggaactgctc agactgtcca gggtccaact tccgcttgcc ctgcctgacg gtcggctgtt
      181 gtcggttccc ctcgccggcg tagtgctgac gatgggaaca gcggtattcg tggccgtcga
      241 gttctccctg gtggcgctgg accggccgac cgtccagcgg gccgtggact ccggtgacgt
      301 tcgcgccgag gtcgtgctgg gatcgctgcg ccgactgtcc acccagctgt cagcggctca
      361 ggtcgggatc accctgacca ccctggtctt cggcttcctc tcgacaccag ccctggcgac
      421 cctgctgcgc tcgccgctcg gggcgacggg cctgcacggg gggaccctca cctcgctgtc
      481 ggcggtgctc tccctggtga tcgccacggt gttctcgatg gtgttcggcg agctgctgcc
      541 ccagttcctc ggcatctcgg cgccgctacc gaccgccaag gtcgtcgcgc tgccggtgcg
      601 gttgttcgcc gtcgtggtcc ggcccctgat cgtcgtcctc aacggctcgg ccaacgcctt
      661 cctgcgcggc ctggggatca cgccccggga ggagctgtcc ggggcccgga ccccgcagga
      721 gctcgcctcc ctggtccgcc ggtcggccgc tgccgggacg ctggacgagg gcacggctcg
      781 gctcgtcacc cggtcgctgc ggttcggcga acagaccgcc gccgacgtca tgagcccgcg
      841 acctcgggct acctcgatcg agcgcacggc caccgccgag gaggtcctgc agctggcccg
      901 gcgtacgggg cactcccggt tcccggtgac gggggaggac tgggacgaca tcgacggggt
      961 cgtgcacgtc aagcgggcga tcgcggtgcc gcacgaccgg cgggccgacg tcccggtgtc
     1021 cgccctcatg gtgccgcccc tcttggttcc cgagacgatc cggctcgacc cgttgttgct
     1081 gctgttgcgc gagcacgggc tccagctcgc catcgtcgtg gacgagtacg gcggcaccgc
     1141 gggggtagtc accctcgagg acgtcgtcga agagatcgtc ggcgaggtct ccgatgagca
     1201 cgacctgttc cggaccaccg ggcgcgagtt caccgacggg tcctggaccg tcccggggtt
     1261 gtggcgcccg gacgaggtcc gcgaacggtt gggagccgtg atcccggagg ggccggccta
     1321 cgagaccacc ggcgggttcg tcatggccgc gctggggcat atcccggtgg tgggtgacac
     1381 ggtctccatc ccagggtggg agatctcggt gatcgcgatg gacggcatgc gcgcggaccg
     1441 actgcggttc gtgcccactg gggatgcccc tgacgaccag cccgcggacg agtcatgaac
     1501 gcgctcgccg tctggacgac ggtcgttctc ctgctgctca acgccttctt cgtgggggct
     1561 gagttcgccg ccatggctgc ccgccgctcg agcctcgagc cgctggctgc cgcgggttcg
     1621 cgacgagccc aagtctgcct ccacgccctc gagcagatgg ggtcgctgct ggcctgcgcc
     1681 cagctcggca tcacgctgtg ctccgtgttg ttgggcgcca tctccgaagc ggccctgcac
     1741 catgccctgg agccggtcgc gcgcggcctg gggatcccga cctcggtggc cgacggtgta
     1801 gccctcgccc tggctttgct cgtgatcgtg tacctgcacg tggtggtcgg cgagatgatc
     1861 cccaagaacc tcggtctcgc cggacctgag cgtgcggcgc tgctcctcgt gcccgcgttg
     1921 ctctatgtga cgcgtgcgct gcgacccgtc atccgggtca tggaggcgct ggccaagggt
     1981 ctcgtgcggc tgttcggggt ggagcccaaa gacgagctga cctccgcgtt caccgtcgac
     2041 gaggtcgagc acatcctcga cgagagccac cacgaggggc tcatcgagga gggccagcac
     2101 ggtctggtcg gcgcggccct cgagttcagc gacaagaacg ctggcgacgt ggcggtctcg
     2161 ctgacctcgc tggtgacctt gccgctgacc gcgacaccgg acgacgtcga gcggctggtg
     2221 gccaaacgtg gcttctcccg gtaccccttg gtggaccggt cggggacgtt ggcgggatac
     2281 ctccacctca aagacgtgtt gtatgccgac gacgccgagc gtggactccc ggttccggtc
     2341 aagcgcgtcc gcaagctggc gactgtgcag gccgccgacg aggtcgaaga ggtcctgcgc
     2401 acgatgcagc gcacgggagc gcacctggct cgcgtcgtcg accccgatgg tgctgcccgc
     2461 ggcgtcgtct tcctcgagga cgtcatcgag gagctcgtcg gcgaggtcac ggacgcctcc
     2521 cagcgttagc agcgacctcc agcagcgccg ttcagcagcg ccgctcccag tcgagcggcc
     2581 cgaaaccgag gctcgcggca tacccgaggc tcgatttcgg gcccctcgtc ggcacctgtg
     2641 gatgacggat ctcgcgaact ggcatcctcc gtcacgcttc cgagatgccc cgagtgccgt
     2701 tgcccgactc gcttggtgac gccttcaccg tcgcggaggg cgcccgggcc ggattgggcg
     2761 aagcgcggat gtacggccca gacctgtcgc gcccgacgca cggagtcagg gcgacccggg
     2821 aacccaccac cctccgggac ctggctgcga ccacggctct ggccctccct gacgactccg
     2881 cgttctcaca ccggacggcg gcgcggctgt ggggcctgcc gctcccggaa gctgacccgc
     2941 aggagctggc cagcccgctt gacgtgatga ggccgtcgtc gtcagcgcgc atcagacggg
     3001 ccgggtgcca cgggcgtcgt ggtctggagt cccgcgaagt ccagttgcac cgtggggttc
     3061 gggtgacaag cctggccgac acctggtgcg acctcggcga ggttctggac ctggatgacc
     3121 tcgtcgtcgt cggcgatgcc gtggccaggc ggctgcaggg tcccggcgac ctgcatgtgg
     3181 ccctccgcag gcgggtccgc ccccgcggtg ccgtggggtt gaggagggcg ctgagcctgg
     3241 tgcgaccggg gtccgactcg ccgatggaga ctcggtgtcg cctcctcttc caccggtccg
     3301 ggctgcctga gcctgagctc aatggcgtca tcagccacgg tcacgggggc ggcttcctgt
     3361 gtcggtcgga cttcgtgtgg cgagccaaga gggtgattgc cgagtaccag ggcgctgacc
     3421 acttcggggg cttcgaacgc ggggacgacg acatctcgag acggctgctg gccgaggacg
     3481 acggttggaa gtacgtggag ctgaccaagc gcgactactt ccaccgaggc cggcgcgcgc
     3541 agttgctggc caggctcgcg gcatacctct tggactgaag gccacacgac gagaggccca
     3601 gaatcgatct ctcagcgctt gctgagcctc gattatgggc ctctcgacaa cgtgcccccg
     3661 gcaggattcg aacctgcgcc accgcctccg gagggcggtg ctctatcccc tgagctacgg
     3721 gggctcgggc gtcgccgacc ttagcagcgg cgcgaccggc gacgatcctg cgcatgcggc
     3781 gtcgatacga tcgccgtgtg act
//
LOCUS       DASYFY010000564         5956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1040138, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000564 DASYFY010000000
VERSION     DASYFY010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1040138"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1339
                     /gene="tig"
                     /locus_tag="VGN19_11525"
     CDS             <1..1339
                     /gene="tig"
                     /locus_tag="VGN19_11525"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEV7196561.1"
                     /translation="TRVKLTVEVPFEELKPSLDAAYATIGSQIQVPGFRKGKVPSRII
                     DQRVGRGAVLQEAVNEALPQFYGQAVEENKVRPIGQPEVDVTEVPAKDGDELKFTVEV
                     DVRPEVTLPDYSSITVEVDVAEASEEDVQERLTSLQERFGTLKGVERSVENGDFVSID
                     LDAKIGDEEIDAVKGVSYEVGSGNMLDGLDETLVGMAAGDTTSFTAPLAGGDREGENS
                     DVTVTVQSVKVRELPSLDDDFAQLASEFDTLEELRADLAKQAERAKKFEQGVQARDKV
                     LEHLLDTIEIPVPDGIVEAEVNAHLEGEDRLADDEHRAEVDTNTRKALRAQFLLDAIA
                     EKEEVKVEQPELIEYLVMSAQQYGMDPNQFAQTIDQQGQIPAMVAEVARRKALAAVLE
                     RANVVDTAGAPVDLNEITSTDVASELYEGHDHEGHDHEGHDHEGHEHEGHDHA"
     gene            1460..1918
                     /locus_tag="VGN19_11530"
     CDS             1460..1918
                     /locus_tag="VGN19_11530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196562.1"
                     /translation="MDHASFHVLRTAVQENARPADEGRAQSLQQRLSAALIDSKLFDQ
                     VELGRTEDPDQLVIGLCRCADRILPWEAGIGVERVWSSIAAEVPWESHTLACTDSLME
                     FEGAVTVDSSGHFITVRLLAEPPARRATSVPERDGGGVASPVPLRVVGRG"
     gene            complement(1915..2997)
                     /locus_tag="VGN19_11535"
     CDS             complement(1915..2997)
                     /locus_tag="VGN19_11535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEV7196563.1"
                     /translation="MAVPRQSRPTLRSVAQAAGVSTSTASLAFSGKGPVAAETVERVL
                     AAATALGYAGPDPLASSLRQGRSGVVGVVVEGRLLHAFRDPFAVSVLDGLSQVLDQIP
                     AGMLLIAQPAGNPERAITQLSSSALDAVVFSLCGPDTNPAVDHLAARGIPMLADGAPG
                     DPRVVQLTVDNRGATAAMARYVRALGHHRVSHLLMPLGPDSTTGPVTVHDLAASVFID
                     ARDRALGFLDVFATPAGLAQAAATDVEQGVRAARLLLDRPEAERPTAIVAQSDLLAVG
                     AVRAAEELGLRVPGDLSVTGFDGVELAWFAGTLTTVDQHGLAKGRRLGALLRRMLDGE
                     RPENEQQPTSLRMGSTTGPPQCQPRR"
     gene            3090..4286
                     /locus_tag="VGN19_11540"
     CDS             3090..4286
                     /locus_tag="VGN19_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196564.1"
                     /translation="MTQTIAPSAARVLAARNAVFVVFALSGTTFATFASRIADSKAAL
                     GLTAGELGLTLLAASAGSLTALPSAGRIADRIGPRRTIELGMAVSLTGLLIVAAAVDL
                     AKTRLLMAVGLFFVGIGVGVWDVAMNLEGAAVERLLGITVMPRFHAAFSGGTVLAALV
                     GAAMSWRHVPLLVHFPAVIVLTLAIGLWALRSFLPRTVEEAAQPHASSSSQPKVGSAW
                     LEPRTLMIGLVVLAAAFTEGSANDWVAVGFVEGHGVPVWAGVLAFASFLSFMTVGRLV
                     GTRLLDRYGRVPVLRVTFAMAAVGSLLVVFGSVPVAYAGTLVWGIGASLGFPVGMSAS
                     ADDPARAAARMSVVATIGYTAFIAGPPLLGLLGDQFTVLRALLAVTVAVGLAMLVIPA
                     TREQRS"
     gene            4433..5086
                     /locus_tag="VGN19_11545"
                     /pseudo
     CDS             4433..5086
                     /locus_tag="VGN19_11545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593363.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
     gene            5098..5763
                     /locus_tag="VGN19_11550"
     CDS             5098..5763
                     /locus_tag="VGN19_11550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEV7196565.1"
                     /translation="MNFNANPSMHGGLHVPAPSSRYILPQFEERTSYGMKRLDPYTKL
                     FEDRIIFLGVQIDDASADDVIAQLIVLESQDPDRDILMYINSPGGTFTAMTAIYDTMQ
                     YIRRDVQTFVIGQAASAAAVLLSAGAKGKRFALPNARILIHQPALAGGDYGQASDIEI
                     QANEVLRMRTWLEDTWAEHSGRTPEQVRNDIERDKILSAAEAKDYGLIDEVLASRKAS
                     TED"
BASE COUNT          961 a         2063 c         2044 g          888 t
ORIGIN      
        1 gacccgggtc aagctgaccg tcgaggtccc cttcgaggag ctcaagccga gcctcgacgc
       61 ggcatacgcg accatcggct cccagatcca ggtgcctggc ttccgcaagg gcaaggtgcc
      121 cagccgcatc atcgaccagc gcgtcgggcg cggggccgtg ctccaggagg ccgtcaacga
      181 ggccctcccg cagttctatg gccaggccgt cgaggagaac aaggttcgcc ccatcggtca
      241 gcccgaggtc gacgtcaccg aggtccctgc caaggacggc gacgagctca agttcaccgt
      301 cgaggtggac gtccggcccg aggtgacgct gcccgactac agcagcatca ccgtcgaggt
      361 cgacgtggcc gaggcctccg aggaggacgt gcaggagcgc ctgacctccc tgcaggagcg
      421 gtttggcacc ctcaagggcg tcgagcggtc ggtcgagaac ggcgacttcg tgtccatcga
      481 cctggacgcc aagatcggcg acgaggagat cgacgcggtc aagggcgtct cctacgaggt
      541 cggctcgggc aacatgctcg acggcctgga cgagaccctg gtcggcatgg ccgccgggga
      601 caccacctcg ttcaccgctc cgctggccgg cggtgaccgc gagggcgaga actcggacgt
      661 cacggtgacg gtccagtccg tcaaggtgcg cgagctgccc tccctggacg acgacttcgc
      721 ccagctggcc tcggagttcg acaccctcga ggagctgcgc gccgacctcg ccaaacaggc
      781 tgagcgtgcc aagaagttcg agcagggcgt gcaggctcgc gacaaggtgc tcgagcacct
      841 cctggacacc atcgagatcc ccgtccccga cggcatcgtc gaggccgagg tcaacgccca
      901 cctcgagggc gaggaccgcc tcgccgacga cgagcaccgc gccgaggtcg acacgaacac
      961 tcgcaaggcc ctgcgcgccc agttcctgct cgacgccatc gccgagaagg aagaggtcaa
     1021 ggtcgagcag cccgagctca tcgagtacct cgtcatgtcc gcgcagcagt acggcatgga
     1081 ccccaaccag ttcgcccaga ccatcgacca gcagggccag atcccggcca tggtcgccga
     1141 ggtcgcgcgg cgcaaggcgc tcgccgccgt gctggaacgg gccaacgtcg tggacaccgc
     1201 cggggccccg gtcgacctca acgagatcac gtcgaccgat gtcgcttccg agctctacga
     1261 gggtcacgac cacgagggtc acgaccacga gggtcacgac cacgagggtc acgagcacga
     1321 gggtcacgac cacgcctgag gcttcctcag tcgacttctg cctacctatg tatgccgctg
     1381 tatgccgcgc acccacctgg ggcgcggcat acagcatttg gacgaaccac taggccgttc
     1441 tgctaggcga ccatgaacca tggaccacgc cagcttccac gtactgcgga ccgcagtgca
     1501 ggagaacgcc cgccccgccg atgagggtcg tgcgcagtct ctgcagcaac gcctctcggc
     1561 ggcactcatc gacagcaagc tcttcgacca ggtggagctc ggccgcaccg aggaccctga
     1621 ccagctggtg atcggcctgt gccgctgtgc cgaccggatc ctgccgtggg aggcgggcat
     1681 cggtgtggag cgggtgtgga gcagtattgc ggcggaggtt ccgtgggagt cgcacacgct
     1741 ggcctgcacg gactcgctca tggagttcga aggggctgtc acggtcgaca gcagcggcca
     1801 cttcatcacc gtgcgactgc tggccgagcc gcctgcgcgc cgggctacct cggtcccgga
     1861 acgcgatggc gggggcgtcg cctccccggt gccgctccgc gtggtcgggc gcggctaacg
     1921 gcgcggctga cactgtgggg ggcccgtggt gctccccatc cgcaggctcg tgggctgttg
     1981 ctcgttctct ggacgctcgc cgtcgagcat ccggcgcagc agcgcgccca ggcgccgccc
     2041 cttggccaaa ccgtgctggt cgacggtggt caaggtcccg gcgaaccacg ccagctcgac
     2101 cccgtcgaac ccggtcacgc tgaggtcgcc tggaaccctg agccccagct cctctgcggc
     2161 acgcaccgcc ccgacggcga gcaggtcgga ctgcgcgacg atcgcggtgg ggcgttcggc
     2221 ctccggacgg tccagcagca gccgtgccgc gcgcacgccc tgctcgacgt cggtggccgc
     2281 cgcttgggcc aggcccgcgg gcgtggcgaa gacgtcgagg aacccgaggg cccggtcacg
     2341 cgcatcgatg aagaccgaag cggccaggtc gtggaccgtc acgggtccgg tggtgctgtc
     2401 gggccccagc ggcatgagga ggtggctcac ccggtggtgt cccagggcgc ggacatagcg
     2461 ggccatcgcc gcggtcgcac cacggttgtc caccgtcagc tggacgacgc gggggtcgcc
     2521 gggcgcgccg tcggcgagca tcgggatgcc ccgggccgcg aggtggtcca ccgcggggtt
     2581 ggtgtccggc ccgcacaggg agaacaccac agcgtccagg gctgaggagg acagctgggt
     2641 gatggcgcgc tccgggtttc cggcaggctg ggcgatcagg agcatcccgg ccgggatctg
     2701 gtcgagcacc tgggacagtc catcgaggac gctgaccgcg aacgggtccc ggaacgcgtg
     2761 caggagccgc ccctcgacga cgacccccac gaccccggag cgaccctggc gtagcgacga
     2821 ggcgagcggg tcgggcccgg cgtatccgag ggcggtggcc gccgcgagca cccgttcgac
     2881 cgtctcggcg gccaccggac ccttgccgct gaaggccagc gacgcggtcg aggtggaaac
     2941 cccggcggct tgcgcgacag atcgcagggt ggggcgagat tgacggggga cggccacgca
     3001 ggacacacta tcgaatcgat tcgatcgaat cgattcgatc tgcaagaccg cctcgctcga
     3061 tgcccaacgt aaacccggaa agccgtgcag tgacccagac catcgccccc tccgcagctc
     3121 gggtgctcgc ggcccgtaac gccgtcttcg tcgtgttcgc cctgtcgggc accacgttcg
     3181 cgaccttcgc ctcgaggatc gccgacagca aggctgccct cggactcacc gccggggagc
     3241 tgggactgac cctgctcgcg gcctcggctg ggtcgctcac ggccctgccg tcggccggcc
     3301 ggatcgctga tcggatcggc ccgcggcgga cgatcgagct cgggatggcg gtgtcgttga
     3361 ccggcctgct gatcgtggcg gcggcggtcg acctcgccaa gacccggctc ctcatggcgg
     3421 tcggtctctt cttcgtcggg atcggggtcg gggtctggga tgtggcgatg aacctcgagg
     3481 gggccgctgt ggagcggctg ctgggcatca cggtcatgcc gcgcttccac gctgccttct
     3541 cgggcggcac cgtcctggcg gcgctggtcg gcgccgcgat gtcctggcgg cacgtcccct
     3601 tgctcgtcca ctttcccgca gtcatcgtgc tgacgcttgc catcggcctc tgggcgctgc
     3661 ggtcgttcct gccgcgaacg gtcgaggagg ctgcacagcc acacgcgtcg agctcgagcc
     3721 agcccaaggt cggctcggca tggctcgaac cgcgcaccct catgatcggg ctggtcgtcc
     3781 tggccgcggc cttcaccgag gggtcggcga acgactgggt ggcggtcggt ttcgtggagg
     3841 gccacggggt tccggtctgg gcgggggtcc tggcgttcgc ctcgttcctg tcgttcatga
     3901 cggtgggccg gctggtgggg acgagactgc tcgaccggta cggccgggtg ccggtcctcc
     3961 gggtcacctt cgcgatggcc gctgtcggct ccctgctcgt ggtcttcggc agtgtccccg
     4021 tggcgtatgc cgggacgctc gtctggggga tcggtgcctc cctgggattc ccggtcggca
     4081 tgagcgcctc ggccgacgac ccggctcggg ccgcggcccg catgtcggtc gtcgccacca
     4141 tcggctacac cgcgttcatc gccgggccgc cgctgctggg cctgctgggt gaccagttca
     4201 ccgtgctgcg ggcgctgctc gcggtgacgg tggcggtggg gctcgccatg ctcgtcatcc
     4261 ccgccacccg cgagcagcgg tcctgaccgg tcctgggacg ggccagcctt gagcattaag
     4321 aattgagcgc ggtgcgctca gggcgaacac ggcgggattc ggggactttg gcgctacacc
     4381 tccgcgttag ggtcactgac agtcaccagc acccccagac gatggagaag acatggcgag
     4441 cagccctcag acgggatccg agatcgtcgc cgcagacgag cggcctcagg gtggtctcga
     4501 cgaccacatc tacaaccgtc tgctcaagga acggatcatc ttcctcggct ccgacgtccg
     4561 cgacgacaac gcgaacgcca tctgcgcgca gctcctgctg ctcgccgccg aggaccccgg
     4621 caaggacatc tggctctaca tcaacagccc cggcgggtcg atctcggcgg gtatggcgat
     4681 ctacgacacg atgaagtgga tccccaacga cgtggccacc gtggccatgg gcatggccgc
     4741 ctcgatgggc cagttcctgc tctccgcagg cacccacggc aagcgctacg ccaccccaca
     4801 cgcccgcgtg atgatgcacc agccctccgg tggcatcggc ggcacggcct cggacatcaa
     4861 gatccaggcc gagcagatgc tcttcgtcaa gaagcagatg gcctagctga tcgccgagca
     4921 cacggggcag ccgctcgaac agatcgagaa ggactccgac cgcgaccgct ggttcggtgc
     4981 ggaggaagcc aagtcctacg gcttcgtgga ccacgtgttc agcagcgccg cccaggcagg
     5041 cgggcgcagc ggcaccgacg acaacccggt caccggggac aagtgaggaa ccgacagatg
     5101 aacttcaacg ccaacccctc catgcacggt gggctgcacg tgccggcgcc gtcgagtcgc
     5161 tatatcctcc cgcagttcga ggagcgcacc tcctacggca tgaagcggct cgacccgtac
     5221 accaagctgt tcgaggaccg gatcatcttc ctcggtgtcc agatcgacga cgcgtccgcg
     5281 gacgacgtga tcgcgcagct catcgtgctg gagtcccagg atcccgaccg cgacatcctc
     5341 atgtacatca acagccccgg tggcacgttc accgcgatga ccgcgatcta cgacacgatg
     5401 cagtacatcc gtcgtgacgt gcagaccttc gtcatcggcc aggccgcctc ggccgctgcg
     5461 gtgctgctgt cggccggcgc aaagggcaag cggttcgcgc tcccgaacgc ccggatcctg
     5521 atccaccagc cggcgctcgc cggcggcgac tacggccagg cgtcagacat cgagatccag
     5581 gccaacgagg tcctgcggat gcgaacctgg ctggaggaca cctgggccga gcactcgggt
     5641 cgcacgcccg agcaggtccg caatgacatc gagcgagaca agatcctgtc tgccgcggag
     5701 gccaaggact acggcctcat cgacgaggtc ctcgcctcac gcaaggcctc taccgaggac
     5761 tgacctgccg cagatggcgg ttgtccgccc tgagcggaca accgccatct gggcacgacg
     5821 cgggcgattc aatggagcga atggagcggt ccggcgggta ccgtcggacc actcggattg
     5881 actgtggcaa ttgcacccag tgggctcccg ctcacgcaag aggttcggag gtcggcgcgt
     5941 ggcacgcatg ggagag
//
LOCUS       DASYFY010000565         1926 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_461172, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000565 DASYFY010000000
VERSION     DASYFY010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461172"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VGN19_11555"
     CDS             complement(<1..641)
                     /locus_tag="VGN19_11555"
                     /inference="COORDINATES: protein motif:HMM:NF012998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HEV7196566.1"
                     /translation="MTAHTRGELRAGYFGPEGTNTQEALLADTAGVDLDTMPLPTIYD
                     TVMAVHDGLVDTALVPIENSLEGSVNATLDALAMETDDVTIVGEVVQPIRHCLIARTS
                     LELSEIETVVSHPQANAQCARFIRTRLPNARVLAGEGSTADAVRLVADHDGPWAALGN
                     RLAAERYGCLVLRAGVEDVADNETRFVWLARAGTAPGGPRAVASGIAPLGPWKT"
     gene            complement(645..1214)
                     /locus_tag="VGN19_11560"
     CDS             complement(645..1214)
                     /locus_tag="VGN19_11560"
                     /inference="COORDINATES: protein motif:HMM:NF025935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4446 family protein"
                     /protein_id="HEV7196567.1"
                     /translation="MHDLTSTVGIVAIAAGAVAVVALLVTVFLAFRLSRLRSEQRAVL
                     GDRREDLVAHAASLRHQFEALHEYVEDIVAGLDQRMATAEQRLDGAIAYTSLVRYDAY
                     GDMSGRQSMSIALLDSTRSGLVLTAILHRDQARLYAKQVHAGRGELELSPEEDEAIKL
                     ALQGGRGPQVAGGGRGQAHAGGVTSTGTA"
     gene            complement(1256..>1926)
                     /locus_tag="VGN19_11565"
     CDS             complement(1256..>1926)
                     /locus_tag="VGN19_11565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196568.1"
                     /translation="FLLALQMRVDGVGNIAKEIQPALAGTASQTAVNNLAAETARLYG
                     SDVIYKSYAVPELVGALHAAGTPFSPINGDQFVTNVQWVLPSFIAQQLHVNVPGAGPT
                     KVAPGLHGHSLTSVSVAGTTLQTGSTNTVPSSPIPTFTLDFNNGGTNNETNVKCKVSI
                     NGSSVSGTATVPETFAGKNASCQVKLNAAPPKGTQSVVATIEKVPGEKNVTNNTNTYT
                     VTFQ"
BASE COUNT          265 a          617 c          734 g          310 t
ORIGIN      
        1 gtcttccacg ggcccagcgg cgcgatgccg gaagccacgg cgcgcgggcc gcccggtgct
       61 gttcccgcgc gggccagcca cacgaagcgt gtctcgttgt cggccacgtc ctccacgccg
      121 gcccgcagga ccaggcagcc atagcgctcg gcggccagcc ggttgcccag ggcggcccag
      181 ggaccgtcgt ggtctgccac caggcgcacg gcgtcggcgg tggagccttc accggcgagc
      241 acgcgcgcgt tgggcagccg ggtgcggatg aagcgcgcgc actgggcgtt ggcctgcgga
      301 tgggacacga cggtctcgat ctccgagagc tccagtgagg tgcgggcgat caagcagtgg
      361 cggatcggct ggacgacctc gccgacgatg gtgacgtcgt cggtctccat ggccagcgcg
      421 tccagggtgg cgttgaccga tccctccagg gagttctcga tgggcaccag cgcggtgtca
      481 acgagcccgt cgtgcactgc catgacggtg tcgtagatcg tcgggagcgg catggtgtcg
      541 aggtccacgc ccgccgtgtc cgccagcagg gcctcctggg tgttggtccc ctcgggaccg
      601 aagtagccgg cccgcaattc gcccctggtg tgagcggtca cgggtcaggc ggtgccggtg
      661 gaggtgacgc cgccggcgtg cgcctggccg cgcccaccgc ccgccacctg cgggccgcgc
      721 ccgccctgga gcgcgagctt gatcgcctcg tcctcctcgg gtgagagctc gagctcgccg
      781 cggcccgcat ggacctgctt ggcgtacaga cgggcctggt cgcgatggag gatggctgtc
      841 agcacgagcc cggagcgggt ggagtccagc agcgcgatcg acatcgactg gcgtccggac
      901 atgtccccgt aggcgtcgta gcgcaccaga gaggtgtagg cgatggcccc gtcgaggcgc
      961 tgctcggcgg ttgccatgcg ctggtcgagc ccggcgacga tgtcctcgac gtactcgtgc
     1021 agagcctcga actggtggcg cagcgaggca gcgtgggcca cgaggtcctc ccggcgatca
     1081 cccagcacgg cccgctgctc ggagcgcagc cgagacagcc ggaaggccag gaacacggtg
     1141 acgagcagcg cgaccacggc aaccgccccc gccgcgatcg ccacgatacc gacggtgctc
     1201 gtcaggtcgt gcaccgcagt aaggataggc ctcggtccgg agggtcgcgg gggtcctact
     1261 ggaaggtgac cgtataggtg ttggtgttgt tggtcacgtt cttctcgccc ggcaccttct
     1321 cgatcgtggc caccacgctc tgcgtgccct tgggcggggc ggcgttgagc ttgacctggc
     1381 agctggcgtt cttgccggcg aaggtctcgg gcaccgtggc ggtcccgctc acgctcgagc
     1441 cgttgatgga caccttgcac ttgacgttgg tctcgttgtt ggtgccgccg ttgttgaagt
     1501 ccagcgtgaa ggtggggatc gggctggagg ggacggtgtt ggtcgagccg gtctgcagcg
     1561 tggtgccggc gacgctgacg gaggtgagcg agtggccatg gaggccgggc gcgaccttgg
     1621 tggggccggc tcccggcacg ttgacgtgca gctgctgggc gatgaacgac ggcaacaccc
     1681 actggacgtt ggtgacgaac tgatcgccgt tgatgggaga gaagggggtg ccggcggcgt
     1741 gcagcgcccc gacgagctcc gggacggcgt agctcttgta gatcacgtcg gagccgtaga
     1801 ggcgggcggt ctcggcggcc aggttgttca cggcggtctg ggacgccgtg ccggcgagcg
     1861 cgggctggat ctccttggcg atgttgccga ccccgtccac gcgcatctgg agggccagca
     1921 ggaact
//
LOCUS       DASYFY010000566         1564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1565314, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000566 DASYFY010000000
VERSION     DASYFY010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1565314"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VGN19_11570"
     CDS             complement(<1..598)
                     /locus_tag="VGN19_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196569.1"
                     /translation="MTEVARPPGYPATWEADVVLRDGSVAHLRPITPADVEAVHRFHS
                     GQSEESIYLRFFAPLRRLSDRDVTRFTNVDYRDRVALVATVRGEIIGIGRYDRITPTS
                     AEVAFNISDAYQGKGIGSVLLEHLAVIAWEAGVDEFTAEVLPQNRKMLSVFSDAGYEV
                     TRHFEDGVVTLRFEIQPTERSEAVRLSREHRAESVSMHS"
     gene            675..1298
                     /locus_tag="VGN19_11575"
     CDS             675..1298
                     /locus_tag="VGN19_11575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEV7196570.1"
                     /translation="MEFREVVRRRRMVRRFDAAREVPLGALTHILYAAQRAPSAGFSQ
                     GWDFVVLADHEDRARFWEATADPDRPVDAWLAGVGAAPVLVLCLSDPDSYLDRYAEPD
                     KGWTDRDPSRWPVPYWDVDTGMAALLMLLSAVDQGLGALFFGVPPNRHGAVRRAHGIP
                     ANRRLVGVVALGYEQERTLSPSLRRGRRPQAEVVHWGSYGESVQGRP"
     gene            1351..>1564
                     /locus_tag="VGN19_11580"
     CDS             1351..>1564
                     /locus_tag="VGN19_11580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007271699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEV7196571.1"
                     /translation="MARKTVNPPADETDFVERIVDIDVQDEMQGAFLEYAVSVIHSRA
                     LPDARDGLKPVQRRILYSMSEMGLRPD"
BASE COUNT          231 a          536 c          561 g          236 t
ORIGIN      
        1 ccgagtgcat gctgacggac tcggcgcggt gctcgcgcga cagccgcacg gcctcggagc
       61 gttcggtggg ctggatctcg aagcgcaggg tgacgacgcc gtcctcgaag tgccgggtga
      121 cctcgtagcc cgcgtcggag aacaccgaga gcatcttgcg gttctggggc aggacctcgg
      181 cggtgaactc gtccaccccg gcctcccagg cgatgacggc caggtgctcc agcagaaccg
      241 agccgatccc cttgccctgg taggcgtcag agatgttgaa ggccacctcg gcgctggtcg
      301 gcgtgatgcg gtcgtaccgg ccgatcccga tgatctcgcc gcgcacggtg gccaccaggg
      361 ccacccggtc gcggtagtcg acattggtga accgggtgac gtcgcggtcg ctcagtcggc
      421 gcaggggtgc gaagaaccgc aggtagatgg actcctcgga ctgacccgag tggaaccggt
      481 ggaccgcctc cacgtcggcg ggagtgatgg gccgcaggtg ggcgacagag ccgtcgcgca
      541 ggacaacgtc agcctcccac gtcgccgggt agccgggcgg ccgggccacc tctgtcatgg
      601 gccaagaatg tcatggccgc ccacgccgac gtgccggtgc cccgccggtc tggccacgcg
      661 cgaggatggg ccccatggag tttcgcgagg tcgtccgccg tcggcgcatg gttcgccgct
      721 tcgatgccgc tcgcgaggtg cccctgggcg ccctgaccca catcctgtat gccgcgcagc
      781 gggctcccag cgcgggcttc agccaagggt gggacttcgt ggtcctcgcg gaccacgagg
      841 atcgcgcgcg gttctgggag gcgaccgcag acccggaccg accggtggac gcgtggctcg
      901 cgggtgtcgg cgccgcgccg gtgctcgtgc tgtgcctttc ggacccggac agctatctcg
      961 accggtacgc cgagccggac aagggctgga ccgaccgtga cccttcccgg tggccggtcc
     1021 cctactggga cgtcgacacc ggcatggccg cgttgctgat gctgctcagc gccgtggacc
     1081 aaggcctcgg cgcgctcttc ttcggcgtcc cgccaaaccg tcacggtgcg gtacggcgag
     1141 cccacggcat acccgcgaac cgcaggctgg tcggggtcgt ggcgctcggg tacgagcagg
     1201 agcgcacgct ctcacccagc ctgcgacgcg ggcgtcgacc gcaggccgag gtggtgcact
     1261 gggggagcta cggcgagtcg gttcaggggc gtccgtgacc gtgggagagg atgaggcgtt
     1321 tcccgcacac accaggagtg gcacctacgc atggcccgca agaccgtgaa cccgcccgcc
     1381 gacgagaccg acttcgtcga gcgcatcgtc gacatcgatg tccaggacga gatgcagggc
     1441 gccttcctcg agtacgccgt ctcggtgatc cactcccggg cgctgcctga cgcgcgtgac
     1501 ggcctcaagc cggtccagcg tcgaatcctg tactccatga gcgagatggg cctgcgccct
     1561 gacc
//
LOCUS       DASYFY010000567         1673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_934800, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000567 DASYFY010000000
VERSION     DASYFY010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_934800"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VGN19_11585"
     CDS             <1..482
                     /locus_tag="VGN19_11585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196572.1"
                     /translation="TGWLGLIGTVLLSLWLVIIMGFSFVEAFILPHPGLVTPEFTNGW
                     MGMFNGYPSKVDLGALPTLWTLTAPLYIGGGVLFGLATYRARIFPRAAAVLLAVGTAA
                     APIAALLPLASQPKVAIPTGLAIAWLGYALLTERAQPLSPAAEPTTKTAQTAIPVAP"
     gene            479..622
                     /locus_tag="VGN19_11590"
     CDS             479..622
                     /locus_tag="VGN19_11590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196573.1"
                     /translation="MSATYDVLVLGGRGYRTQRSVGLSAAHDVESRHSLPRKDSRKVH
                     IPR"
     gene            681..>1673
                     /locus_tag="VGN19_11595"
     CDS             681..>1673
                     /locus_tag="VGN19_11595"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7196574.1"
                     /translation="MTRWSCSAPTAVGHGAAGVPSAATADVGPSEIYARSPDERQAAK
                     DLRQRAGERLDPVVDDVAEMYGEEFSSPPTPSLELMLLAHDDQGSGPAVVLLHAGVAD
                     RRMWDAVTPALAHTFRVIRPDLRGFGETPLPRGPYADADDVDSLLAWLDIADAAVVGS
                     SFGGRVAMEVATLYPARVSSLVLLCAAYRGLEPTESVRTFGAEEDRLIEAGDIDGAVD
                     LNVRTFLGPEADRGSRELLTRMQRRAFEVQIAADQADQADPGPEPRRVDVDPGDIAVP
                     TLVVSGAHDLDHFRHVATHLAERVPGAEHVELDWAGHLPAMERPGAVLALLLDVL"
BASE COUNT          245 a          610 c          550 g          268 t
ORIGIN      
        1 agaccggctg gctgggcctc attggcacgg tgctgctcag cctctggttg gtcatcatca
       61 tgggcttcag cttcgtcgag gcgttcatcc tgccccaccc gggcctcgtg accccggagt
      121 tcacgaacgg gtggatgggc atgttcaacg gctaccccag caaggttgac cttggcgccc
      181 ttccgacact ctggacactc acagcgccgt tgtacatcgg cggaggcgtg ctgtttggcc
      241 tcgccaccta ccgtgcccgc atcttccccc gcgccgcagc agtcctactc gcggtcggta
      301 cggcggcggc gcccatcgcc gctctgcttc cactcgcgtc gcagccgaag gttgcgattc
      361 cgacgggact ggccattgcg tggctgggat acgcgctgct gaccgagcgc gctcagccgc
      421 tctcacccgc ggcggaacca acaacgaaga ctgcccaaac agccattcca gtagccccat
      481 gagcgccacc tacgacgtcc tggtcctcgg cggccggggc taccggacgc aacgcagcgt
      541 tggtctgtca gccgcgcacg acgtcgagtc tcgtcactcc ctccccagga aggactcacg
      601 aaaagtacac atcccgcggt gacgacaccc cggcaggacc tcaggtccag ccggggtctg
      661 ggcacgtccg ggctcagtcg gtgacgcgct ggtcgtgcag cgcccccacg gcggtaggac
      721 acggcgccgc cggagtcccc tcggcggcaa ctgcggatgt cgggccatca gagatctacg
      781 cccgatcgcc cgacgagcgc caggcggcca aggatctgcg ccaacgggcc ggcgaacggc
      841 tcgacccagt ggtcgacgac gtcgccgaga tgtatggaga agagttttcc tccccgccaa
      901 cgcctagtct cgaactcatg ctgctcgccc atgacgacca gggttcgggt cccgcggtcg
      961 tgttgctcca cgcaggggtc gcggaccggc ggatgtggga tgccgtcaca ccggccctgg
     1021 cccacacctt ccgggtgatc cgacccgacc tgcgcgggtt cggcgagaca cccctgccaa
     1081 ggggtccgta tgccgacgcc gacgacgtcg acagcctcct ggcctggctg gacatcgccg
     1141 acgccgctgt ggtcgggtca tcgtttgggg ggcgggtggc gatggaggtg gccaccctct
     1201 acccggcgcg ggtgtcgtcc cttgtcctgc tctgcgccgc ctaccgcggg ctcgagccca
     1261 ccgagtcggt gcggaccttc ggtgccgagg aggaccggct catcgaggcc ggtgacatcg
     1321 acggtgcggt cgacctcaac gtccgcacct tcctcggccc ggaggccgac aggggctcgc
     1381 gcgagctgct cacccggatg cagcgccggg cgttcgaggt ccagatcgcc gccgaccaag
     1441 ccgaccaagc cgaccccgga cccgagccgc gccgggtcga tgtcgacccc ggcgacatcg
     1501 cggtgccgac ccttgtcgtc tcgggggctc acgacctcga ccacttccgc cacgtggcga
     1561 cccatctggc tgagcgggtc ccgggtgccg agcacgtcga gctcgactgg gccggacacc
     1621 tcccggccat ggagcggccc ggcgcggtgc tggccctgtt gctcgacgtg ttg
//
LOCUS       DASYFY010000568         3003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_514729, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000568 DASYFY010000000
VERSION     DASYFY010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514729"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            461..1576
                     /locus_tag="VGN19_11600"
     CDS             461..1576
                     /locus_tag="VGN19_11600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEV7196575.1"
                     /translation="MRGTHGEDTHEQFGEAPMDRAPSVGGGASGGRPQAHRQAPPTRG
                     EPLLSLPAGSPASLGQVTEVAGRLARAMNSVIEGKPDVVHTAITVLLAEGHLLLEDVP
                     GVGKTMLAKTLARSIDCSVRRVQFTPDLLPSDITGVSVFNQDLRDFEFRPGAIFANVV
                     VGDEINRASPKTQSALLESMEEGQVTVDGQTYDLPKPFIVMATQNPIEMEGTYPLPEA
                     QRDRFMARISMGYPSARAEVAMLDSHGQVSPLDSLSPVTDAATVTAMVRAVRSVFTSD
                     AIKQYVVDLSGATRASTALRLGASPRATLHMLRASRAHAALDGRDHVLPDDVQAIVLP
                     VLAHRVIPTGETQLARRSTGEVLQDLMRRVPVPAAGR"
     gene            1585..2859
                     /locus_tag="VGN19_11605"
     CDS             1585..2859
                     /locus_tag="VGN19_11605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEV7196576.1"
                     /translation="MRRLRDLLTTRGRAFVAAGLTLVLCGVGLGFVDLVRIGVLLLVL
                     PLLSGALMRRHDLRFSLERTAVPSRVQVDEPCIVTLAIENAGGAASPLLMAEEQLDYA
                     LGDRPRFVVPRLRRGDRQEVHYSVRSHLRGRHRVGPLGVRLRDPFGLSTRVAAISGFS
                     EVLVLPRLVPLGGTRPPGSGVGAEGAIPHMVALHGEDDVSIRAYRDGDDLRRIHWPAT
                     AKTGALMVRQEDRPARRRAVVVLDSRAEGHHGTGSSGSFEWAVTACASVAAHLVEQGY
                     AVHLVTDDTAEDHRSSAALDLDPLLDVLAMAQTGSQDQFADVLQAAHPVTASGGLVLA
                     VVTALDEELARRVASLRQPGGTAMAIVLDPDGFSATRRRAPHRSEDLACVPVLRWAGW
                     GVTLVRSGDDLATVWSALSGTGTRGVEMVGAP"
BASE COUNT          425 a         1113 c         1013 g          452 t
ORIGIN      
        1 ggggaggaag agccggcctt tgtcgtcgag gcgagggctg tgcgtgccga gaaacactgc
       61 tcccacctcc cctgccggct cccagggagc cccacgactc tctggtttcc cccactttac
      121 tccaccgttc tccaaaccga cagcgacttg cccaaatcgc tggcccttct ccgaacattt
      181 ccgcaggtca acaccgtggt ggaaagtgga gcagatccga gccccttgcc cacctgggca
      241 gcgaagagac cctttgtccg accacgacgc accccgcgag gggtcgctgc caggacaaac
      301 ccagggcgca tcacccgtcg gactccggtc cgactccggt ccgacgccgg taggactcgc
      361 atacctctgg tttggtggtg cgaagtgggg gaagatcgat caccaccttc cttcgcgtcc
      421 cgaatggcga ggtgcgacag gggctacgga aggaacacca gtgcgcggta cgcacggcga
      481 ggacacccac gagcagttcg gtgaggcacc catggaccgc gcacccagcg ttggcggagg
      541 ggccagcggg gggcgcccac aggcgcaccg acaggctccg cccacccggg gggagccgct
      601 gctctccctc ccggccgggt ctcccgcatc gctgggtcag gtcaccgagg tcgccggacg
      661 gctggcccgg gctatgaact cggtgatcga gggcaagccc gacgtggtgc acaccgccat
      721 cacggtgctg ctcgccgagg gacacctgct gctcgaggat gtcccgggcg tcggcaagac
      781 catgctggcc aagacgttgg ctcggtccat cgactgctcc gtgcgtcggg tccagttcac
      841 cccggacctg ctgcccagcg acatcacggg ggtgagcgtg ttcaaccagg acctgcgcga
      901 cttcgagttc cggccgggcg ccatcttcgc gaacgtcgtg gtcggcgacg agatcaaccg
      961 cgcctccccc aagacccagt ccgccctact ggagtcgatg gaggagggtc aggtgacggt
     1021 cgacgggcag acctacgacc taccgaagcc gttcatcgtc atggctaccc agaaccccat
     1081 cgagatggag ggcacctatc cgttgccgga agcccagcgc gaccggttca tggcccgcat
     1141 ctcgatgggc tacccctccg cgcgggccga ggtggcgatg ctcgacagcc atggccaggt
     1201 ctcgccgctg gacagcctgt cccccgtcac cgacgccgcg accgtcaccg ccatggtccg
     1261 ggccgtgcgc tcggtgttca ccagcgacgc gatcaagcag tacgtcgtcg acctctccgg
     1321 cgccacgcgc gcaagcacgg ccctgcggct gggcgcctcc cctcgagcca ccctgcacat
     1381 gttgcgggcc tctcgagcgc acgccgccct cgatggtcgc gaccacgtgc tccccgacga
     1441 cgtgcaggcc atcgtcctgc ccgtgctcgc gcaccgggtg atcccgaccg gagagaccca
     1501 gctcgcgagg cgaagcacgg gcgaggtcct gcaggacctc atgcggcgcg tacccgtccc
     1561 cgccgccggc cgctgaggcg gaccatgcgc aggcttcgcg acctcctcac cactcgcgga
     1621 cgcgcgttcg tcgccgcggg actgaccttg gtgctgtgcg gcgtggggct ggggttcgtc
     1681 gacctcgtcc ggatcggcgt cctcctgctg gtcctcccct tgctcagcgg cgcactcatg
     1741 cgccgtcacg acctgaggtt ctccctggaa cggactgccg tcccgagccg ggtccaagtc
     1801 gacgagccgt gcatcgtcac cctcgccatc gagaacgcgg ggggcgccgc cagcccgctg
     1861 ctgatggctg aggagcagct cgactacgcg ctcggagacc ggccccggtt cgtggtcccc
     1921 cggctccggc gtggggaccg acaggaggtg cactacagcg tgcgctccca cctgcgcggc
     1981 cggcaccggg taggcccgct gggggtccgg ctgcgcgacc cgttcggcct gagcacgagg
     2041 gtcgccgcga tctcgggctt cagtgaggtg ttggtcctgc ctcgcctggt cccgctcggc
     2101 gggacgcggc cacccggcag cggggtcgga gccgaggggg caatcccgca catggtggcc
     2161 ctgcacggtg aggacgacgt gtccatccgg gcctaccgcg acggcgacga cctgcgccgc
     2221 atccactggc ccgctacggc caagaccggc gccctcatgg tccgccagga ggaccgcccg
     2281 gcgcggcgca gggcggtcgt cgtcctggac tcccgcgccg aggggcacca cggcacgggt
     2341 agctccggat cgttcgagtg ggccgtcacc gcctgcgcct cggtcgccgc ccacctcgtc
     2401 gagcaggggt atgccgttca cctcgtcacc gacgacaccg cagaggacca ccggtcgtcg
     2461 gcagccctcg acctggaccc gttgctcgac gtcctggcca tggcgcagac cgggtcgcag
     2521 gaccagttcg ccgacgtcct gcaggcggcc caccccgtca cggcatcggg cggtctggtg
     2581 ctcgccgtcg tcacagcgct cgacgaagag ctcgcgcgcc gcgtcgcctc gctgcgccag
     2641 cccggcggca ccgcgatggc catcgtgctc gatccggacg ggttcagcgc tacccggcgc
     2701 cgcgcccccc accgctcgga ggatctggcc tgtgttcccg tcctgcgttg ggccggttgg
     2761 ggggtcacgc tggtgcggtc cggcgacgac cttgccacgg tctggagtgc tctgtcgggt
     2821 accggaacca ggggtgtcga gatggtcggg gcgccatgag ccgcgcccga gcgcccgagt
     2881 cgctgctggc gggcctggcc accgccgtcg tcgcctggcc gctgaccacc ctgttcacgc
     2941 cggacacctg ggtcgacccg gccatcctcg tcatcgccgc cgtggtcgtc acggggatgc
     3001 tgg
//
LOCUS       DASYFY010000569         6042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1409486, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000569 DASYFY010000000
VERSION     DASYFY010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409486"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1428
                     /locus_tag="VGN19_11610"
     CDS             <1..1428
                     /locus_tag="VGN19_11610"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein
                     domain-containing protein"
                     /protein_id="HEV7196577.1"
                     /translation="VAELDGLAAQGYRDILTLGVTPVLAAQLDEPRMRRDAATWVGLW
                     EQRARELGSRPDAHHREAARVEYAAAARAADLLATRWSAGGSPVLTSLRDAGVVELLG
                     GPAAHPFLPLLLPELVETALEAGLRDSTWRHGGRPTGIWSPECGWSPHLAEAFGQAGV
                     SHFVVDEQTVRDAGGHPHGGWRVAGSSVLAVPRDLDVTNLIWSSRSGYPAGAAYRDFH
                     ARDEGTGARLWAITEPDVGRSSKRPYDVSAAAAQVRRDVSHFVDAVTVRLRQASEVTG
                     APALVVAAYDTELFGHWWHEGPAFLGLAIRALCEAGVEVTTLEKALTAGFVAGELELG
                     PGSWGAGKDFSVWDGPAVRQLAHENEWMQRRWLDLLSRERSAGRLGTRRPDLDQLLVS
                     LFHALSSDWAFLVTRGQSVDYAHRRAEQHRREFHGLAQLVEDGRFEQSRAQASRLALR
                     DGAFPSLDARVTTQPMTTQPVTTSS"
     gene            complement(1412..2068)
                     /locus_tag="VGN19_11615"
     CDS             complement(1412..2068)
                     /locus_tag="VGN19_11615"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEV7196578.1"
                     /translation="MATAADADMSPVDHGEHGPWDVPRPVAWVRWLIWAGRNRAFTRH
                     HLLSYLRMARASARYPSLRFEGPCFIGPDVRFEVREGYARLIVGAYTHFGAHARVRAH
                     EGTLRIGSKSVIGIRTTINCWLDISIGDACLFGDDVYICDFDHVTESLDLPVKDQGIV
                     KSPVRIGDDVWLGTKVVVTRGADIGEHCVVAALAVARGVYPARSVVAGVPGKVVRTRS
                     "
     gene            complement(2070..3026)
                     /locus_tag="VGN19_11620"
     CDS             complement(2070..3026)
                     /locus_tag="VGN19_11620"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7196579.1"
                     /translation="MSRPKAPAPATAAEVAAAYRDNKLAQVLYHDWEAQSYDDKWSIS
                     FDRRCIDYARGRFEAITGSPDPLPYPVALELGAGTGFFSLNLKQAGVLDRVHVTDLSP
                     GMVEAAQANAEMLGFEVEGRVADAERIPYDDNTFDIVVGHAVIHHIPDVEAAFAEMLR
                     VLKPGGRFVVAGEPTRIGDWYARWLGRLTWAAATTVTRLPPLRAAWAKDREQLDESSR
                     AAALEAVVDLHTFDPDELARMALRAGAVEVRTQTEELTAAFLGWPVRTFEAAVKPGAL
                     GWDWAMFAYTSWKRLSAVDRLLAKAVPAKFFYNVGITGVKPG"
     gene            complement(3030..3809)
                     /locus_tag="VGN19_11625"
     CDS             complement(3030..3809)
                     /locus_tag="VGN19_11625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEV7196580.1"
                     /translation="MSELVSLEVEGGIATILLSRPPMNALNAEVQAALAGAAHEAGQR
                     RDVSAVILYGGEKVFAAGADIKEMEGMSYTDMVDHAGSLQDFTKAIARIPKPTIAAIT
                     GYALGGGCELALACDFRVAGRNAKLGQPEILLGIIPGAGGTQRLARLVGPAKAKDLIF
                     SGRFVSADEALAMGLVDEVVEAEDVYAAARRRMEQYVGGPSYALRAAKEVIDRGLEVD
                     LETALDIERSQFAALFATKDREVGMRSFVENGPGKAVFEGA"
     gene            complement(3806..4294)
                     /locus_tag="VGN19_11630"
     CDS             complement(3806..4294)
                     /locus_tag="VGN19_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196581.1"
                     /translation="MSDPTSLPNFPPSPHEHPLRGRVLDALIDQGLAPDIDSDGDVAF
                     TAQEQQLFVRCTEGDFQIMRVFGQWAIGDAVPADPLRRLATCNELTLQLNIVKAGLAN
                     DTLVVTAEHVVTPQSDVTTLVAVSVQLVLAGVQMWHERIMGGGSDAGPGAGQPTPEGG
                     PA"
     gene            4330..>6042
                     /gene="glgX"
                     /locus_tag="VGN19_11635"
     CDS             4330..>6042
                     /gene="glgX"
                     /locus_tag="VGN19_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004133 - glycogen debranching enzyme
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HEV7196582.1"
                     /translation="MSPAVLPRDLPPRPGMTAVEGGSEFAVYAGHAESVTVCLYDADD
                     PDGSSERRIPLPERTHGVWFGFLPGVGPGQRYGIRADGLWRPAEGLRYNPAKVLLDPY
                     ARAIDGEVRWTPEVFAHRVDNRLRGDDLVRSALDSVASVPRSVVIDEHFEWGDDAPPH
                     TPLAESVVYEAHVRSLTRNHPDVPEHLRGTYAGLCHPAVLDHLKSVGATAVELLPVQA
                     FASEPEVARRGLVNHWGYNTLGFFAPHAKYASTPDPQGAVDEFKGMVRLLHQAGLEVI
                     LDVVYNHTAEQSGRTGASLSWRGLDNRAYYRLDERGQDIDVTGCGNTLDLRHAMVCRM
                     VLDSLRYWVQECHVDGFRFDLAVALGRGRNDDYDPNHPFLVALRTDPVLSRVKLIAEP
                     WDLGIHGWRTGQFPPPFSEWNDRFRDSVRTFWLDDLKARSLGHQGHGVRELGTRMAGS
                     QDLFGTLDRGPIASVNFVAAHDGFTVADLTRYNAKHNGPNGEGNADGTNHNSSWNHGV
                     EGPVEAGDEPAGIERAGDEPAGIEVARRRTMRNLLATTLLATGVPMLNAGDEIGRSQG
                     GNNNP"
BASE COUNT          902 a         2155 c         2086 g          899 t
ORIGIN      
        1 gtggcggagc tcgatgggct cgcggcgcag gggtaccgcg acatcctcac cctcggtgtc
       61 acccccgtgc tggccgccca gctggacgag ccgcggatgc gccgcgacgc cgccacctgg
      121 gtcggtctgt gggaacagcg agcacgggag ctgggctcgc gtcccgacgc ccaccaccgt
      181 gaggcggccc gcgtggagta tgccgccgcc gcgcgcgcgg cggacctcct tgcgacccga
      241 tggagtgccg ggggctcgcc cgtcctgacg tcgctgcgcg acgcgggggt cgtcgagctt
      301 ctgggtgggc cggcagcgca tccgttcttg cccttgttgt tgccggagct cgtcgagacg
      361 gccctcgagg cggggctgcg cgacagcacc tggcgtcacg gcggccgccc gacgggcatc
      421 tggtcaccgg agtgcgggtg gtcaccccac ctggcggagg ccttcggcca agccggggtc
      481 agccacttcg tcgtcgacga gcagacggtc cgcgacgcgg ggggacatcc ccacgggggg
      541 tggcgggtgg ccggctcgtc cgtcctggcg gtcccgcggg acctggacgt cacgaacctc
      601 atctggtcct cgcgtagtgg gtatcccgcg ggagccgcat accgcgactt ccacgctcgc
      661 gacgaaggca ccggcgcgcg cctctgggcg atcaccgagc cggacgtcgg gcgctcgagc
      721 aagcggccgt acgacgtctc tgcggcagcc gcccaggttc ggcgcgacgt ctcccacttc
      781 gtcgatgcgg tgaccgtgcg actccgccag gccagtgagg tgaccggggc gcccgcactc
      841 gtcgtcgcgg catacgacac cgagctgttc gggcactggt ggcacgaggg accggccttt
      901 ctcgggcttg cgatcagagc actctgtgag gctggcgtcg aggtcaccac gctcgagaag
      961 gcgctcactg cgggcttcgt ggcgggcgag ctcgagctcg ggcccggctc gtggggcgcc
     1021 ggcaaggact tctcggtgtg ggacggaccg gccgtgcgtc agctcgccca cgagaacgag
     1081 tggatgcaac gtcgctggct ggacctgctg tcccgcgaac gctccgcggg tcggctgggc
     1141 acccgaaggc cggacctcga ccagctgctc gtctccctgt tccatgccct gtccagcgac
     1201 tgggccttcc tggtgacccg cgggcagtcc gtggactatg cgcaccggcg ggccgagcag
     1261 caccgtcgcg agttccatgg cctggctcag ctcgtggagg acggtcgctt cgagcagtcg
     1321 cgggcccagg cctcgcgact cgctctgcgc gacggggcgt ttccgtcact cgatgcgcgg
     1381 gtcacgaccc agcccatgac gacccagccc gtcacgacct cgtcctgaca accttcccgg
     1441 ggacgcctgc caccacggac cgggcggggt agaccccccg ggccaccgcc agcgcggcca
     1501 cgacgcagtg ctccccgatg tcggcccccc gcgtcacgac caccttggta cccagccaca
     1561 cgtcgtcgcc gatgcgcacc ggagacttga cgatcccctg gtccttgacc gggaggtcga
     1621 gcgactcggt gacgtggtcg aagtcgcaga tgtacacgtc gtcgccgaag aggcaggcgt
     1681 cgccgatgct gatgtccagc cagcagttga tggtcgtgcg gatgccgatg accgacttgc
     1741 tgccgatgcg caacgtgccc tcgtgcgccc gcacccgcgc gtgggctccg aaatgggtgt
     1801 aggcgccgac gatgagtcgg gcatagccct cgcgcacctc gaaacgcacg tccggaccga
     1861 tgaagcaggg gccctcgaac cgcaacgacg ggtaccgggc gctggcccgc gccatccgca
     1921 ggtagctgag caggtggtgt cgggtgaagg cgcggttgcg cccggcccag atgagccacc
     1981 gcacccacgc gactggtcgc ggaacatccc acggcccgtg ctcgccgtgg tcgacgggcg
     2041 acatgtccgc gtctgctgcg gtcgccacct cagccaggct tcacgccggt gatcccgacg
     2101 ttgtagaaga acttggcggg caccgccttg gccagcaggc gatccaccgc cgacaaccgc
     2161 ttccaggacg tataggcgaa catggcccag tcccagccga gcgcgcctgg cttgaccgct
     2221 gcctcgaacg tccgcaccgg ccagcccagg aaggccgcgg tcagctcctc ggtctgcgtg
     2281 cgcacctcga cggcaccggc gcgcagggcc atacgggcca gctcgtcggg gtcgaaggtg
     2341 tgcaggtcca cgacggcttc gagcgccgcg gcccgcgagg actcgtcgag ctgctcgcgg
     2401 tccttggccc aggcggcgcg caacggcggc aaccgggtca cggtcgtggc agccgcccag
     2461 gtgaggcgcc ccagccacct ggcgtaccag tcgccgatcc gggtgggctc gccggccacc
     2521 acgaaccgtc cgcccggctt cagcactcgc aacatctcgg cgaacgcagc ctccacgtcc
     2581 gggatgtggt ggatcaccgc atgcccgacg acgatgtcaa acgtgttgtc gtcgtatgga
     2641 attcgctcgg cgtccgcgac ccttccctcg acctcgaagc cgagcatctc ggcattcgcc
     2701 tgggcggcct cgaccatccc tggcgacagg tcggtgacgt gcacccggtc gagcacaccc
     2761 gcctgcttga ggttcagcga gaagaacccc gtgccggcgc cgagctcgag cgccacggga
     2821 tacggcagcg ggtcaggaga gccggtgatc gcttcgaatc ggccgcgcgc gtagtcgatg
     2881 cagcggcggt cgaacgagat ggaccacttg tcgtcatagg actgcgcctc ccagtcgtgg
     2941 tacagcacct gggcgagctt gttgtcccgg tatgccgcgg ccacctcggc ggcggtggcg
     3001 ggcgcgggcg ccttggggcg tgacatgggt caggcgcctt cgaagacagc cttgccgggg
     3061 ccgttctcca cgaacgatcg catcccgacc tcgcggtcct tggtggcgaa gagcgctgcg
     3121 aactgcgagc gctcgatgtc gagcgcggtc tcgaggtcga cctcgagccc ccggtcgatg
     3181 acctccttgg cggcacgcag ggcataggag ggaccaccga cgtactgctc catgcgccgc
     3241 cgagccgcgg catacacatc ctccgcctcg accacctcgt cgaccagccc catcgccagc
     3301 gcctcgtccg ccgacacgaa ccggccggag aagatgaggt ccttcgcctt ggccggaccc
     3361 acgagccggg ccagtcgctg ggtcccgcct gcccccggga tgatgccgag caggatctcg
     3421 ggctggccca gcttggcgtt gcggccagcg acccggaagt cacacgccag tgccagctca
     3481 cagccaccac cgagcgcgta gcccgtgatc gccgcgatgg tgggcttggg gatgcgggcg
     3541 atcgccttgg tgaagtcctg cagggagccg gcgtggtcga ccatgtccgt atacgacatc
     3601 ccctccatct ccttgatgtc cgcgccggcg gcgaagacct tctcgccgcc gtacaggatc
     3661 accgcggaga catcacgccg ctgacctgcc tcgtgggcag cgcctgccag ggccgcctgg
     3721 acctcggcgt tcagcgcgtt catggggggc cggctcagca ggatcgtagc gattccgccc
     3781 tcgacctcga ggctgacgag ctcgctcatg ccggtcctcc ctcgggagtc ggctgacccg
     3841 cgccgggtcc agcgtccgac ccaccgccca tgatccgctc gtgccacatc tggaccccgg
     3901 cgaggacgag ctggaccgac acggccacga gcgtggtgac gtcggactgc ggggtgacga
     3961 cgtgctcggc cgtgaccacc agcgtgtcgt tggccaggcc ggccttcacg atgttcagct
     4021 gcagggtcag ctcgttgcag gtcgccagcc gcctgagcgg gtcggcgggc acggcgtcgc
     4081 cgatcgccca ctgcccgaac acccgcatga tctggaagtc gccctcggta caccggacga
     4141 agagctgctg ttcctgtgcc gtgaacgcga cgtcaccgtc agagtcgatg tcgggcgcca
     4201 ggccctggtc gatcagggcg tccagcaccc gtccgcgcaa aggatgctca tgcggcgagg
     4261 ggggaaagtt gggtagggac gtcgggtcgc tcatgggccc aaccgtaacg actgcctagg
     4321 ctgagagcca tgtcgcccgc cgtgcttccg cgtgaccttc ctcccaggcc gggaatgacc
     4381 gcggtcgagg gcggctcgga gttcgcggtg tatgccggac acgccgagtc ggtgacggtg
     4441 tgcctgtacg acgccgacga ccccgacggc tcgtccgaac gacggatacc gctgccggaa
     4501 cgcacccatg gcgtgtggtt cgggttcctg cccggggtcg gccccgggca gcgctacggg
     4561 attcgcgcgg atggcctgtg gcggcctgcc gagggcctgc ggtacaaccc ggccaaggtc
     4621 cttctcgacc cttacgcccg cgccatcgac ggcgaggtgc gttggacgcc ggaggtcttc
     4681 gctcaccggg tggacaaccg gctgcgcggc gacgacctgg tccgtagcgc cctcgacagc
     4741 gtggcgtcgg tgccccgcag tgtggtcatc gacgaacact tcgagtgggg cgacgacgca
     4801 cccccgcaca ccccgctggc cgagtcggtc gtctacgagg cccacgtgcg gagcctgacc
     4861 cgcaaccacc ccgatgtccc cgagcacctg cggggcacgt atgccggcct gtgccaccca
     4921 gccgtgctcg accatctgaa gtccgtcgga gccactgccg tggagctgct ccccgtccag
     4981 gccttcgcgt ccgagcccga ggtcgcgcgc cgaggtctcg tgaaccactg gggatacaac
     5041 acgctggggt tcttcgcgcc gcacgcgaag tacgcctcga ccccagaccc gcagggcgcc
     5101 gtggacgagt tcaagggcat ggtccggctg ctgcatcagg ctggtctcga ggtcatcctc
     5161 gacgtcgtct acaaccacac cgccgagcag tccggacgca cgggtgcgtc cctgtcgtgg
     5221 cgcggcctgg acaaccgcgc gtactaccgt ctcgacgaac gcggccagga catcgacgtg
     5281 acggggtgcg gaaacaccct ggacctgcgt cacgccatgg tgtgccggat ggtcctggac
     5341 tcgctgaggt actgggtaca ggagtgccac gtcgacgggt tccgcttcga cctcgcggtg
     5401 gccctgggcc gcgggcgcaa cgacgactac gaccccaacc accccttcct ggtggcgcta
     5461 cgcaccgatc cggtgctgtc ccgggtcaag ctcatcgcgg agccatggga cctggggatc
     5521 cacggctggc gcaccgggca gttcccgccg cccttctcgg agtggaacga ccggttccga
     5581 gactcggtgc gcacgttctg gctcgacgac ctcaaagccc ggtcgctggg ccatcagggc
     5641 cacggagtcc gcgagctcgg gacccgcatg gcaggctcgc aggacctgtt cgggacgctc
     5701 gaccgaggcc ccatcgcgtc ggtcaacttc gtcgccgcgc acgacggctt caccgtcgcc
     5761 gacctcaccc ggtacaacgc caagcacaac ggcccaaacg gggagggcaa tgccgacggt
     5821 acgaaccaca actcgtcctg gaaccacggg gtggaggggc cggtcgaggc cggcgacgag
     5881 ccggctggca tcgagcgggc tggcgacgag ccggctggca tcgaggtggc gcggcggcgg
     5941 accatgcgca acctgctggc cacgaccctc ttggccaccg gggtgccgat gctcaacgcc
     6001 ggcgacgaga tcggacgctc gcagggaggc aacaacaacc cc
//
LOCUS       DASYFY010000570         5159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1303579, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000570 DASYFY010000000
VERSION     DASYFY010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5159
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1303579"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1444
                     /gene="purF"
                     /locus_tag="VGN19_11640"
     CDS             <1..1444
                     /gene="purF"
                     /locus_tag="VGN19_11640"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEV7196583.1"
                     /translation="EDVAKLTYYGLYALQHRGQESAGIATSDGRSILVYKDMGLVSQV
                     FDERSLASLRGHLAVGHCRYSTTGGSTWENAQPTLGGHAESTVALAHNGNLINSIELR
                     DLVAERRADGFGSAGGELGRGNTTDTALVTALLADDPDRSLEAAALDLLPRLRGAFCF
                     VFMDEHTLYAARDPQGIRPLVLGRLERGWVVASETAALDIVGASMIREVEPGELIAID
                     EDGLRSQRFAEAEPKGCVFEYVYLARPDTTINGRGVHESRVEMGRTLAREHPVEADMV
                     MPTPESGTPAAIGYAQESGIPYGQGLVKNSYVGRTFIAPSQTIRQLGIRLKLNPLREV
                     IKGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPPVRWPCFYGIDFATRAE
                     LIATGIGVEEVCTSIGADSLGYISEEGMVAATDQPASALCTACFTGSYPIGVPSTSHL
                     GTNLFETLPLDVDGVALGVGGGAEDALSRP"
     gene            complement(1528..2397)
                     /locus_tag="VGN19_11645"
     CDS             complement(1528..2397)
                     /locus_tag="VGN19_11645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196584.1"
                     /translation="MTSDYQYDLLRTYRYVRAGMIFLVGFLGVSVFIEARAHGFSIEQ
                     SISAYYYTPVKPAFVAALCAVGVLMIVYRGNTSAEDGFLNASGFLAFVVAFVPTRPEN
                     VCVVRDLPGDTVSAIANNTSALFIVAAAAFAFTMLLEEELREERLVTSRGGQASLVFS
                     LVAFAALGLYFLTERDSFICHGHDTAAILLFVGIVVVVGLNGWGLAVKQAALTHSTPR
                     EHLWNRYFYGFVLMLASIAVVVLLGPVTHALDHWVFWLEGALITQFATFWITQTAELW
                     NEPKRGARVPPRK"
     gene            2488..3612
                     /gene="purM"
                     /locus_tag="VGN19_11650"
     CDS             2488..3612
                     /gene="purM"
                     /locus_tag="VGN19_11650"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006503751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEV7196585.1"
                     /translation="MTDVSEPITYASAGVDVEAGDRAVELMKAAVRGATRPEVLGGLG
                     GFAGLFDASVLSGMVRPILATSTDGVGTKVAIAQALDQHDTIGFDLVGMVVDDIVVCG
                     AEPLFMTDYIATGSVVPERIAAIVGGIAAACQAARVALVGGETAEHPGLLAPDEYDVA
                     GAATGVVEYADLLGPDRVVPGDVVLALGSSGLHSNGYSLVRKVIGAAGWSLDRQVPEF
                     GQSLGHELLTPTRVYAADLLDLIRMAGMDVHALSHVTGGGLAANLARVLPRTVFARLD
                     RSTWTPPAVFSTIGALGRVPREDLERTLNMGVGFVAMLPAEHVDAASRELAARGIPSW
                     PLGEITSLEDATVLEGHEVVRGAKGVDGGAVQLVGSHPAG"
     gene            3669..4151
                     /locus_tag="VGN19_11655"
     CDS             3669..4151
                     /locus_tag="VGN19_11655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196586.1"
                     /translation="MWEVDHEDLSVRQYRYLLRTAPLDAMEEAHVEVLARLALSRRAV
                     VLRAVQEGLVAGLRLTADDVRRIAHLIVLGERRSPGSFLRACPDQVLIPVAEGVIVAE
                     ASFGRFGGYAGWDGVEPPEDPGRDDSAFAEPWHVAHDIHVMYRGINGPSSPDNFGGSH
                     "
     gene            complement(4261..4455)
                     /locus_tag="VGN19_11660"
     CDS             complement(4261..4455)
                     /locus_tag="VGN19_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3073 domain-containing protein"
                     /protein_id="HEV7196587.1"
                     /translation="MGRGRAKAKQTKVARELKYFSPNTDLNALERELHGSSYSEPERV
                     SEDSVTEDEYDEYGKWASGR"
     gene            complement(4608..>5159)
                     /locus_tag="VGN19_11665"
     CDS             complement(4608..>5159)
                     /locus_tag="VGN19_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine dehydrogenase"
                     /protein_id="HEV7196588.1"
                     /translation="AGVGKVGRILTGHLVEDGANVMVTDVNAEALAALKAQYPQIEVV
                     ADTGTLVRSDIDVYAPCALGGALDDDTVEALQATVVCGGANNQLVVEGDGGTADRLKA
                     RGITYAPDFLVNAGGVIQVSDELHGFDFERAKKGATAIFDHTLEVLQTADRRGITPAA
                     AADHIAEERMAAKAAGGIWLPAH"
BASE COUNT          780 a         1726 c         1820 g          833 t
ORIGIN      
        1 cgaggacgtc gccaagctca cctactacgg gctctacgcc ctgcagcacc gcggccagga
       61 gtcggcaggg atcgcgacct ccgacgggcg cagcatcctg gtctacaagg acatggggct
      121 ggtctcccag gtcttcgacg agcggtcgct ggcttcgctg cgcggccacc tggcggtggg
      181 tcactgccgg tactcgacca cgggcggctc cacgtgggag aacgcccaac cgacgctggg
      241 gggccacgca gagtcgactg tcgcgctggc ccacaacggc aacctgatca actcgatcga
      301 gctgcgtgac ctcgtggccg agcgccgggc cgacggcttc ggatcggctg ggggcgagct
      361 gggccggggc aacaccacgg acactgcgct cgtgacggcg ctgttggcag acgacccgga
      421 ccgctcgctc gaggctgccg ccctcgacct gttgccccgg ctgcgcggcg ccttctgttt
      481 cgtcttcatg gacgagcaca ccttgtatgc cgcccgcgac ccccagggga tccgccccct
      541 cgtgctcggc cgcctggagc gtggatgggt ggtggcctcc gagaccgccg cgctcgacat
      601 cgtcggtgcg tccatgatcc gtgaggtcga gcccggcgag ctgatcgcga tcgacgagga
      661 cggcctgcgc tcgcaacggt tcgccgaagc ggagcccaag ggctgcgtgt tcgagtacgt
      721 ctatctcgcg cgcccggaca cgacgatcaa cggtcgaggc gtgcacgagt cgcgggtcga
      781 gatggggcgc accctggccc gcgaacaccc ggtcgaggcg gacatggtga tgccgacacc
      841 ggagtccgga accccggcgg ccatcggcta cgcgcaggag tccgggatcc cctacggcca
      901 gggtctggtc aagaactcct acgtggggcg caccttcatc gcgccgtcgc agacgattcg
      961 ccagctcggc atccggctga agctcaaccc actgcgcgag gtcatcaagg gcaagcggct
     1021 cgtggtggtc gacgactcga tcgtgcgcgg gaacacgcag cgagcgctcg tgcggatgct
     1081 gcgcgaggcg ggagccgccg aggtgcacgt gcgcatctcg tcgccgccgg tgcgctggcc
     1141 ctgtttctac ggcatcgact tcgccacccg ggccgagctc atcgccaccg gcatcggtgt
     1201 ggaggaggtc tgcacctcga tcggcgccga ctcgctcggg tacatctcgg aggagggcat
     1261 ggtcgctgcc accgaccagc ccgcctctgc gctgtgcacg gcctgtttca ccggctcgta
     1321 cccgatcggt gtgccgagca ccagccatct cggcacgaac ctcttcgaga cgttgcccct
     1381 cgatgtcgac ggggtggcgc tcggcgtcgg cggcggggcc gaggacgccc tctcccgccc
     1441 ctgagcgcgg ccgcgtaggg cgcgccgacc cgcgtcgtcg gtcgtcaagg cgtcggtcgt
     1501 caaggcgtcg ttcgaccgga gctccgccta cttgcggggc gggactcggg ctccacgttt
     1561 cggctcgttc cacagttctg ctgtctgggt gatccagaag gtcgcgaact gggtgatcag
     1621 cgccccctcg agccagaaga cccagtggtc gagcgcgtgg gtgaccggcc cgagcaggac
     1681 cacgaccgcg atcgaggcga gcatgaggac gaacccgtag aagtaccggt tccacaggtg
     1741 ttcgcgcggg gtggagtgcg tcaatgccgc ctgcttgacc gccaagcccc agccgttcag
     1801 gccgaccacg acgacgatcc cgacgaacag caagatcgcg gccgtgtcgt ggccatggca
     1861 gatgaaggag tcgcgctcgg tcaggaagta caggcccagg gccgcgaacg ccacgagcga
     1921 gaacaccagc gatgcctggc cacctcgcga cgtaaccagc ctctcctcac ggagctcctc
     1981 ctcgagcagc atcgtgaagg cgaaggccgc tgcggccacg atgaacagcg cggacgtgtt
     2041 gttggcgatg gccgacacgg tgtcgcctgg caggtcgcgg acgacgcaga cattctcggg
     2101 ccgggtcggg acgaacgcga cgacgaaggc caggaagccg gaagcgttga ggaagccgtc
     2161 ctcggctgag gtattgccgc gatacacgat catcaggacg ccaacggcgc acagagccgc
     2221 gacgaacgcc ggtttgacgg gcgtgtagta gtacgcgctg atggactgct cgatggagaa
     2281 cccgtgggca cgcgcctcga tgaacaccga gacgccgagg aaccccacca ggaagatcat
     2341 ccctgcccgc acatagcggt aggtgcgcaa caagtcgtac tggtagtcgc tggtcatgac
     2401 aggccccctt cacccgcgga tggcccctgc tgcctgcagt gtcccgcgat tgaggcctgg
     2461 cgtccgggct ttggccaggc ggctaggctg accgacgtga gcgaaccgat cacctatgcc
     2521 tccgccggcg tcgacgtcga ggccggtgac cgggccgtcg agctgatgaa ggccgccgtc
     2581 cgtggcgcga cccgccccga ggtgctgggt gggctgggcg gcttcgccgg cctgttcgac
     2641 gcctcggttc tgtctgggat ggtgcgcccg atcctggcga cgtcgacgga tggggtgggc
     2701 accaaggtgg ccatcgccca ggccctcgac cagcacgaca ccatcggctt cgacctcgtc
     2761 ggcatggtgg tcgacgacat cgtggtctgt ggcgccgagc cgctgttcat gacggactac
     2821 atcgccaccg gctccgtcgt cccggagcgc atcgccgcga tcgtcggcgg gatcgccgct
     2881 gcctgtcagg cggcgcgggt ggccttggtg ggcggcgaga cggccgagca cccggggctg
     2941 ctcgcacccg atgagtacga cgtggcggga gccgccacgg gcgtggtcga gtacgccgac
     3001 ctgctcggcc ccgaccgagt cgtccccggc gacgtcgtcc tcgccttggg gtccagcggg
     3061 ctgcactcga acggatattc gttggtgcgc aaggtgatcg gcgctgccgg ctggagcctc
     3121 gaccgccagg tgccagagtt cgggcagagc ctgggacacg agctgctcac cccgacgcgg
     3181 gtgtatgccg cggatctgct ggacctgatc cgcatggcgg gcatggacgt ccacgcgctg
     3241 tcgcacgtga ccggcggtgg cttggccgcc aacctcgcgc gggtgctgcc gcggacggtc
     3301 tttgcccgcc ttgaccggtc gacctggacg ccgccggccg tcttctccac gatcggggcg
     3361 ttggggcggg tgccgcgcga ggatctcgag cgaaccctca acatgggcgt ggggttcgtg
     3421 gcgatgcttc ccgccgagca cgtggacgcg gcctcgcgcg agctggccgc tcgcggcata
     3481 ccgagctggc ctttgggtga gatcacctcc ctggaggacg cgacggtcct ggaggggcat
     3541 gaggtggtca ggggcgcgaa gggcgtcgat ggcggcgccg tgcagctcgt cgggagccac
     3601 cccgcaggct gaacccagag gtcaaggcgg cgctgttcga ccagtcgatg cgggtctacc
     3661 gttgacgcat gtgggaggtc gaccacgagg atctctcagt gcggcagtac cgctacctgc
     3721 ttcgcaccgc tcctctggac gccatggaag aggcccacgt cgaggtgctg gcccggttgg
     3781 ccctatcgag gcgggcggtc gtactgcgcg ccgttcagga gggcctcgtc gccggtttgc
     3841 ggctgaccgc cgacgatgtg cggcggatcg cccacctcat cgtgctcggt gaacggcgca
     3901 gccccggatc cttcttgcgg gcatgtccgg accaggtgct cattcccgtc gctgaaggcg
     3961 tgatcgtggc cgaggcgtcc ttcggacggt tcggcgggta cgcgggctgg gacggtgtcg
     4021 agccgcccga ggacccgggg agggacgaca gtgccttcgc ggaaccgtgg cacgtggcgc
     4081 acgacatcca cgtgatgtac cgagggatca atggcccgag cagcccggac aactttggtg
     4141 gcagccactg acccatccgt cacccgggca cacggcacga ggaaatggcc gtatgccgcg
     4201 ggcggcggag atgcgtgaca cgagccgaag cccgcgcatg aggttggtta gggcgtcagg
     4261 tcatcgaccc gaggcccatt ttccgtattc gtcgtactcg tcttcggtca cggagtcctc
     4321 ggagacgcgc tccggctccg agtacgaaga cccgtgcaat tctcgctcaa gcgcattcag
     4381 gtccgtgttc ggagagaaat atttcagctc ccgagcgacc ttcgtctgct tggctttggc
     4441 ccggccgcgc cccatggcgt gaccccctca tgcgtctgcc gggacggcat cgcctggtcg
     4501 agtcaccttg cgatgcctcg gctccacgga gcggtcccgg gaaatgtgta tgtgtcgtgg
     4561 gtccaacgct acaggaggga cgcaacttct gtgacgagac ccgcctctca atgagcgggc
     4621 agccagatcc ccccagcagc tttggccgcc atccgctctt cagcgatgtg gtctgcggcc
     4681 gcggcggggg tgattccccg gcggtccgcg gtctgcagca cctcgagggt gtggtcgaag
     4741 atcgcggtcg cgcccttctt ggcccgttcg aagtcgaagc cgtgaagctc gtcgctgacc
     4801 tggatgacgc cgccagcgtt gaccaggaag tcgggggcgt aggtgatgcc gcgtgccttg
     4861 aggcggtcgg cggtgccgcc gtcaccctcg acgaccagct ggttgttggc accaccgcag
     4921 acgaccgtgg cctgcagggc ttcgacggtg tcgtcgtcca gagcgcctcc cagcgcgcac
     4981 ggggcgtaga cgtcgatgtc cgagcgcacc agcgtcccgg tgtcggcgac gacctcgatc
     5041 tgcgggtact gcgccttgag ggcggccagc gcctccgcgt tgacgtcggt gaccatgacg
     5101 ttcgccccgt cctccaccag gtgcccggtg aggatgcggc cgaccttgcc gacgccggc
//
LOCUS       DASYFY010000571         8836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1356967, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000571 DASYFY010000000
VERSION     DASYFY010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8836
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1356967"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..768)
                     /locus_tag="VGN19_11670"
     CDS             complement(<1..768)
                     /locus_tag="VGN19_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018157213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEV7196589.1"
                     /translation="MNRHRMTRPAVMALALASTAGLCLGACSTTKTSGPGAAGSSGGS
                     NGPIKIGLVTKTDSNPYFVKLRESAKAEAAKHGDSLIALAGKFDGDNAGQVTAIENLV
                     QQGVKGILITPSNSGGVLGAIKKAQDAGVIVIALDTATTPADAVTATYATNNEQAGKL
                     LGQYVKARMGSTKPQIVAMDLDPSASVGIQRHNGFLEGMGLPLQTPDIIGSALTQGDQ
                     TKAQAAMENLLQRVGGSVNVVYNINEPAARGAYQALKE"
     gene            929..1987
                     /locus_tag="VGN19_11675"
     CDS             929..1987
                     /locus_tag="VGN19_11675"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEV7196590.1"
                     /translation="MKPPRRAPRLADVAAVAGVSITTVSHVVNGTRFVAPDTRDRVRQ
                     ALASLNYESPPLAVRTRSGRALGLAITGASNPYFGELIQGVESEASRAGFALLLCDTH
                     DDAQREAAAVAMLQAHNVEAIVIAPTQGWQSATLPLLRRHVTPFVLVDRMSEVRCDQV
                     GTENEAVSVALVEHLLELGHRRIGMLTGLEGLSTTHERWRGYVRAHEIMDVPVDARLA
                     VPAHSTVGGGRAGTAAMIRMGEPPTAIFSGNNAMTIGALLALKQGRRRVPEDIALVTF
                     DDFEWASAMSPALTAAAQPFHAMGAQAVQLLLRRLEDPFAPRRVVRLPAEIEHRESCG
                     CHPEDEQERTHGVGSATS"
     gene            complement(2010..2876)
                     /locus_tag="VGN19_11680"
     CDS             complement(2010..2876)
                     /locus_tag="VGN19_11680"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEV7196591.1"
                     /translation="MRRRTLLSLLAAAATAATAVPLALPAVGATISPLRYVALGDSYS
                     AASGVLPPDPTAPVSCLRSVLNYPHVIAGQTGATLVDVTCGAAQTKDFFASQYQGVPP
                     QLDAVHQDTQLVTMTIGGNDSNVFVNTIVDCGTAGLTTLGQGSPCKDRYGSSFQDTVR
                     TTTYPALVQALKAVRAKAPRARIAILGYPWIMPATVGCFDKMSIATGDVPYVRGIQAT
                     LNDAVRRAAGATGTTYVDFGTVSNGHDACQPMGVRWIEPVLQGTNPVIVHPNALGESQ
                     LAAQTMRTLRLP"
     gene            3010..6291
                     /locus_tag="VGN19_11685"
     CDS             3010..6291
                     /locus_tag="VGN19_11685"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196592.1"
                     /translation="MHADDGSSEASSPDVARWLLQAVPDGLWVLDSTGRTVFANEAMA
                     TILARDPQEMDGFDAFSALDGAGQEQLREHLRDLETVGEPGDDLECSLLRKDGERISA
                     LISHSPIVDEHGTRRGWLHRVTEYTQQRQLLETLQRREHQLAEAQTIAKIGSWEWDVV
                     ADVVRWSDQLFRIYDLDPDKLVPTFAGFLDGIHPQDREAVAQSVNAVFAAGDSFEFDA
                     RILRPDGRIGWLRGRGIVSRDESGAPLRMSGTAQDITAAKEAEQALALLRAVATAAND
                     ADTLVEAVPAAIEEVSRYTPWRAQAAYLIEGSGDPRQLSLPGESPLAAEVDAVHELAM
                     TGIASAAIATQVLADAVLLAAPLVAAGRVAGVLVLRRDGAALPQQRETATVAQAMALF
                     ARVAEREQASAVLAAARDEAMSASRAKSEFLATMSHEIRTPLNGVIGLSELLGRTELT
                     DRQRRLADGIEEAGRALLGLVNDVLDLSKIEAGRLDLEHVDFDVRLVIEQSASLLAGA
                     ARAKSLEFAIACPAGLPALVRGDPGRLGQVIANLTANAVKFTSKGEVVVRAAVEPVDE
                     LGVGVVGVADAQAVRLRIEVSDTGLGIGDQDQARLFDAFSQADSSTTRQYGGTGLGLA
                     ISSRLVTAMGGEIGVRSELGVGSTFWFTAVLGTPDQGSSAKAASPTSLRDVRVLVVDD
                     NDTNRLILAEQLAAWDAHSEVAASVAEGLTLLERAHDRGAPFDVVLLDYLMPGADGLE
                     FARRARHDVNHDHTRLVLLTSAIEPDQGVLAAAGVDLALAKPVLAGHLRDAVSAVLSG
                     TAPSWAESERTAEAAQQGGRAERSASVQGRPAPLGRVLLVEDHPVNQLVAEGILSNLG
                     YEVVVAENGEAGVRRFAELGHGLDAVLMDCQMPVLDGYAATRAIRAMEGPSRRLPIIA
                     LTAAAVMGERERCLEAGMDDFLTKPVEVALLREVLERWVAPPPTVTKSVDELVEAPPV
                     DPDLLDASRLAELLDLDPGDPAMLLRFIGRFGASARHTAAELRERRAAGAAYDVGRLA
                     HALKGSAANLGAHRLSARCDEIELLVEERVLASDALIASVAEEVEAATGALEAFAEGL
                     RAASA"
     gene            6402..6983
                     /locus_tag="VGN19_11690"
     CDS             6402..6983
                     /locus_tag="VGN19_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196593.1"
                     /translation="MNSPTRILVAEDEALIRLDLAEMLAEAGYDVVGQASNGEQAVEM
                     AHELAPDLVIMDVKMPVMDGITAAEQIGAAKICPVVMLTAFSQTELVERARDAGVMAY
                     IVKPFTAADLGPAIDIARHRWTEYTALEREIADLGERLETRKAVDRAKGILMKKLKIS
                     EAEAFRWIQKTAMDRRLGMREVADAVVSGMDKA"
     gene            6987..7520
                     /locus_tag="VGN19_11695"
     CDS             6987..7520
                     /locus_tag="VGN19_11695"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013770071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196594.1"
                     /translation="MSVRPASAPDAGALAQVAAATFALACPPHVSAESIETFVRTVLS
                     QERFEEYLADPARDLFLAENDGAAVGYAMLVTGEPEDPEVRAALSLEPTAELSKIYVL
                     PQAHGGAVAAELMAAALDAARRRGAAGVWLGVNQLNQRAQKFYSKSGFARVGSKRFRV
                     GDRYEDDFVYELAVGAL"
     gene            7750..8265
                     /locus_tag="VGN19_11700"
     CDS             7750..8265
                     /locus_tag="VGN19_11700"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196595.1"
                     /translation="MASRVEAGMSAEVVARVAADGRLTATLHREDVRAYVAMNDGRAV
                     GFAIAATSPFSALTEAPCVTIDQLYVSPLARRHGVARHLMSAVALYADSRGCEQIGCN
                     VPAPNREANRFFARLGFSSQVVRRITTVAALRRRLGADEPRHHSLEQLLLRRRSLRAR
                     ATAAASNRLAG"
     gene            complement(8284..8715)
                     /locus_tag="VGN19_11705"
     CDS             complement(8284..8715)
                     /locus_tag="VGN19_11705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HEV7196596.1"
                     /translation="MQHQSPFADATRAMEEMNPNSLMRRMQIEILDATPERVVGRMPV
                     EGNTQPYGLLHGGASVVLAETLGSIGSALHAGPARIAVGLDINATHHRAARSGWVTGT
                     ATALSLGNTLASYDVVITDDQDKRVCTCRITCLIRDAAPGS"
BASE COUNT         1340 a         2936 c         3147 g         1413 t
ORIGIN      
        1 ctccttgagg gcctggtagg cgccgcgagc tgccggctcg ttgatgttgt agaccacgtt
       61 gaccgagccg cccacccgct gcagcaggtt ctccatggcc gcctgcgcct tggtctggtc
      121 accctgggtc agggcgctgc cgatgatgtc gggcgtctgc aagggcaggc ccatgccctc
      181 gaggaatccg ttgtggcgct ggatgcccac cgaggcgctg gggtcgaggt ccatggcgac
      241 gatctgcggc ttggtgctgc ccatccgtgc cttgacgtac tggccgagga gcttcccggc
      301 ctgctcgttg ttggtggcgt aggtggcggt gaccgcgtcc gcgggcgtcg tcgcagtgtc
      361 gagcgcgatc acgatgacac ccgcgtcctg agccttcttg atcgcgccaa ggacccctcc
      421 tgagttgctg ggcgtgatca gtattccctt gacgccctgc tggacaaggt tctcgatggc
      481 ggtcacttgc cctgcgttgt cgccgtcgaa cttgccggcc agtgcgatca ggctgtcgcc
      541 atgcttggct gcctctgcct tggccgactc gcgaagcttc acgaagtagg ggttgctgtc
      601 cgtcttggtc acgagaccga tcttgatcgg accgttggat ccgccgctac tcccggcggc
      661 gccagggcca gaggtcttgg tggtgctgca ggcgccgaga cacaggcctg cggtcgatgc
      721 gagtgcgagg gccatcacgg ccggacgggt catgcggtgg cggttcatgt gccttctcct
      781 ggacgaggcc gaaacggcgt tggttgggac tcggtcacct ttgccttctg ctgcaaaggt
      841 ttcgcccaat gtagaagtcg cgccagtcga accaaatagt ttgcgcaaat ggttgcgcga
      901 aaagtcccgg gtcgtgaacg atgcgagggt gaagccccca cggcgtgccc cgcgactggc
      961 ggatgtcgcg gctgtggccg gggtctccat caccaccgtg tcgcacgtcg tcaacgggac
     1021 gaggttcgtt gctcctgaca ctcgcgaccg ggtccgccag gcgttggcga gcctgaacta
     1081 cgagtcacct ccacttgcgg tgcgcaccag gagcggacgg gccctcggtc tggccatcac
     1141 gggcgcctcc aacccgtact tcggcgaact gatccaaggg gtggagtcgg aagccagcag
     1201 agcgggcttc gctctcctgc tgtgtgacac ccacgatgac gcgcagcgcg aggccgccgc
     1261 tgtggcgatg ctccaggccc acaacgtcga agccatagtg atcgcgccca cccaggggtg
     1321 gcagtctgcg acgttgcctc tgctgcgcag gcacgtcact cctttcgtcc tcgtcgaccg
     1381 tatgagtgag gtgcgctgtg accaggtggg caccgagaac gaggccgtct ccgtggccct
     1441 ggtagagcac ctgctggagc tcggacatcg acggatcggc atgttgaccg ggctagaagg
     1501 gctgtcgacc acccacgagc gttggcgcgg atacgtccgg gcgcacgaga tcatggatgt
     1561 gccggttgac gcgcggctgg cggtaccagc acattccacg gtcggtggtg ggcgcgccgg
     1621 tacagcggcg atgatccgca tgggcgagcc gccgacggcg atcttcagtg ggaacaacgc
     1681 gatgaccatc ggcgcgctgt tagcgctgaa gcagggtcgc cgacgggtcc cggaggacat
     1741 cgccttggtc acctttgacg atttcgagtg ggccagcgcc atgtctcccg cgctgaccgc
     1801 agcagcccag ccgtttcatg ccatgggcgc gcaagcggtc cagctgctct tgcgcagact
     1861 cgaggaccct tttgcgcccc gccgtgtggt gcgcctgccg gcagagatcg agcaccgcga
     1921 aagctgtggc tgccatccgg aggacgaaca agaaaggacg cacggcgtgg gaagcgcgac
     1981 cagctagcga ccgcgcctgc aagagctgat cagggcagcc tgagggtccg catggtctgg
     2041 gcggccagct gcgactcgcc caacgcgttc ggatggacga tgacggggtt ggtgccctgg
     2101 agcaccggct cgatccagcg gacccccatc ggctggcagg cgtcgtggcc attcgacacg
     2161 gtgccgaagt cgacgtaggt cgtgccggtg gccccggcgg cgcgtcgcac ggcgtcgttg
     2221 agggtcgcct ggataccgcg gacgtacggc acgtcaccgg tggcgatcga catcttgtcg
     2281 aaacagccca cggtggccgg catgatccac ggatagccca ggatggcgat cctggcgcga
     2341 ggagccttgg cccgcaccgc tttcagcgcc tgcaccagcg ccggataggt cgtcgtgcga
     2401 acagtgtcct ggaaggacga tccgtagcgg tccttgcagg ggctgccttg cccgagggtg
     2461 gtcagcccgg cggttccgca gtcgacgatc gtgttgacga agacattgct gtcattgcct
     2521 ccgatggtca tggtgaccag ctgggtgtcc tggtggacgg cgtcgagctg gggtggcact
     2581 ccttggtact ggctggcgaa gaagtccttc gtctgcgccg cgccgcaggt cacgtcgacc
     2641 aacgtcgccc cggtctggcc ggcgatgacg tgcgggtagt tgagcaccga gcgaaggcag
     2701 ctcaccggtg cggtcgggtc tggggggagc acccctgacg cggcgctgta ggagtctccc
     2761 agggcgacgt accgtagtgg gctgatggtc gccccgaccg cgggcagggc cagcggcacc
     2821 gcggtggcgg cagtcgcggc ggcggcgagc agggacagca gggttcgacg gcgcatcacg
     2881 gactccaggg tcggggcgac tggtgaccgg cttaacgacc gcgtgaacga atcgttacaa
     2941 gttgaccccg atgagacctg tccgggtgtc ggcgcggcga tgcgctcgtg cgtacgtgag
     3001 gatatgcgcg tgcacgcgga tgatggcagc tccgaggcca gcagccccga cgtcgctcgc
     3061 tggctgctcc aagccgtccc cgacgggctg tgggtgctgg acagcaccgg gcgtacggtc
     3121 ttcgccaacg aagcgatggc cacgatcctg gcgcgcgacc cccaggagat ggacggtttc
     3181 gacgcgttct ccgcgcttga cggagccggg caggaacagc ttcgcgagca cctgcgcgac
     3241 ctcgagacgg tgggcgagcc cggcgacgac ctcgaatgca gcctgttgcg caaggacggc
     3301 gagcggatct ccgccctgat cagccattcg cccatcgtcg acgagcacgg cacgcgccga
     3361 ggctggctac accgcgtcac ggagtacacc cagcaacggc agctcctgga aaccctgcaa
     3421 cggcgggaac atcagctcgc cgaggcgcag accattgcca agatcggtag ctgggagtgg
     3481 gacgttgtcg ccgatgtcgt ccggtggtcc gaccagctgt tccgtatcta cgacctggat
     3541 cccgacaagc tcgtccccac ctttgccggc ttcctcgacg gcattcaccc gcaggaccgc
     3601 gaagccgtgg cccagagcgt caacgccgtg ttcgccgcag gtgactcctt cgagttcgac
     3661 gcccgcatct tgcggccgga cggccggatc ggctggctgc ggggccgggg gatcgtgtcc
     3721 cgcgacgaga gcggcgcgcc cctgcgcatg agcggaaccg cgcaggacat caccgccgcc
     3781 aaggaggccg agcaggcgct ggccctgctt cgggcggtgg ccacggcagc caacgacgcg
     3841 gacaccctcg tggaggcggt tcccgccgcc atcgaggagg tgagtcgcta cacgccgtgg
     3901 cgagctcagg cggcatacct catcgagggc tccggcgacc ccaggcagct gagcctgccc
     3961 ggggaaagcc ctctagcggc cgaggtggac gccgtccatg agctcgcgat gaccgggatc
     4021 gcgagcgcgg cgatcgccac ccaggtgctc gcggacgccg tgctgcttgc cgcgcccttg
     4081 gtcgcggccg gtcgggtcgc gggggtgctg gtcctgcgtc gcgacggagc agcgctgccg
     4141 cagcagcggg agaccgccac ggtcgcgcag gccatggcgc tgttcgcccg agtggccgag
     4201 cgagagcagg cctccgcggt gctggccgcg gctcgcgacg aggccatgtc ggcctcccgg
     4261 gccaagtcgg agttcctcgc gacgatgagc catgagatcc gcacgcccct caacggggta
     4321 atcgggttga gcgagctctt gggtcgcacc gagctcaccg accgacagcg acgtctggcc
     4381 gacggcatcg aagaggcggg ccgagccttg ctgggactgg tcaacgacgt gctcgacctg
     4441 tccaagatcg aggcagggcg gctcgacctc gaacacgtgg acttcgacgt gcggctggtc
     4501 atcgagcaga gcgccagcct gctcgcaggg gccgcgcggg ccaagtcgct ggagttcgcc
     4561 atcgcctgtc ccgcggggct gcccgcgctg gtgcgcggag acccggggcg gttggggcag
     4621 gtgatcgcca acctcacggc gaatgccgtg aagttcacgt ccaagggcga ggtcgtggtc
     4681 cgcgcggcgg tggagcctgt cgacgagctc ggggtcggcg tcgtcggcgt cgctgatgcc
     4741 caggccgtac ggctgcggat cgaggtcagc gacaccggac tcggcatcgg agaccaggac
     4801 caggcgcgac tcttcgacgc gttctctcag gccgacagct caacgacgcg ccagtacggg
     4861 ggcacggggc tgggcctggc catcagcagc cgactggtca ccgccatggg cggcgagatc
     4921 ggcgtgcgca gcgagctcgg ggtgggaagc accttctggt tcacggccgt cctggggact
     4981 cctgaccagg gctcgtccgc caaggccgct tcgcccacgt cgctgcgaga cgtgcgcgtc
     5041 ctcgtcgtcg acgacaacga cacgaaccgc ctgatcctcg ccgagcagct cgccgcctgg
     5101 gacgcgcaca gcgaggtcgc cgcctcggtg gccgaggggc tcacgctctt ggagcgggcc
     5161 cacgatcgcg gcgcgccctt cgacgtcgtc ctcttggact acctcatgcc tggagcggac
     5221 gggctcgagt tcgcccgccg cgctcgacac gacgtcaacc acgaccacac ccggctggtc
     5281 ctgctcacct cagcgatcga gcccgaccag ggtgtcctgg cggcggccgg ggtcgacctg
     5341 gcactggcca agcccgtcct ggcgggtcac ctgcgcgacg cggtgtcggc ggtcctgtcc
     5401 ggaaccgccc cgagctgggc cgagtccgag cggacagccg aggcggcaca acagggtggc
     5461 cgggccgagc ggagcgcctc ggtccagggc cggccggcgc cgctcgggcg ggtgctgctg
     5521 gtcgaggacc acccggtcaa ccagctcgtg gccgagggga tcctgtccaa cctcgggtac
     5581 gaggtggtcg tcgccgagaa tggcgaagct ggggtgcgac ggttcgccga gctcggccac
     5641 ggtctcgacg ccgtgttgat ggactgtcag atgccggtgc tcgatgggta tgccgcgacc
     5701 cgcgccatca gggccatgga gggaccgtcg cgccggctcc cgatcatcgc cctgaccgcg
     5761 gccgcggtga tgggggagcg ggaacgctgc ctggaggctg ggatggacga cttcctcacc
     5821 aagccggtcg aagtcgccct gctgcgggaa gtcctggagc ggtgggtggc tccgccgccc
     5881 accgtgacga agtcggtcga cgagcttgtg gaggcaccgc cggtcgaccc cgatctcctc
     5941 gatgccagcc ggctcgcgga gctgctcgac ctcgacccag gcgaccccgc catgctgctg
     6001 cgcttcatcg gccggttcgg tgccagcgcc cgccacaccg cggctgagct gcgcgagcga
     6061 cgggctgcgg gagcggcata cgacgtcggt cgtctagccc acgccctgaa gggaagcgcc
     6121 gcgaacctcg gggcgcaccg tctctcggcg cgctgtgacg agatcgagct gttggtcgag
     6181 gagcgagtgc ttgcctcgga cgccctgatc gcgtcggtgg ccgaggaggt cgaggccgct
     6241 acaggcgccc tggaggcctt cgcggagggt cttcgagccg catcggcgta agggtgttgg
     6301 gggtcccggc caccggcaac gtgccgtcaa cgaacgtccc ctaggctgac ccggtgagcg
     6361 agagccagcc gacgacgcag ccgccccagg cgacgtccac cgtgaacagc cccacccgca
     6421 tcctcgtggc cgaggacgag gccctgatcc gtctcgacct ggccgagatg cttgccgagg
     6481 cgggctatga cgtggtgggt caggccagca acggcgagca ggccgtcgag atggcccatg
     6541 agctcgcgcc agacctggtc atcatggacg tgaagatgcc cgtcatggac ggcattaccg
     6601 cagccgagca gatcggcgcg gccaagatct gcccggtcgt gatgctcacg gcgttcagcc
     6661 agaccgagct ggtcgagcga gcccgtgacg cgggcgtgat ggcctacatc gtcaagccgt
     6721 tcacggccgc agacctcggg cccgccatcg acatcgcgcg ccaccgctgg accgagtaca
     6781 ccgcgctcga gcgtgagatc gccgacctcg gggagcgcct cgagacgcgc aaggccgtcg
     6841 accgggccaa gggcatcctc atgaaaaagc tgaagatcag cgaggcggag gcgttccgct
     6901 ggatccagaa gaccgccatg gaccggcgcc tggggatgcg agaggtcgcg gacgcggtcg
     6961 tcagcggcat ggacaaggcc tgaccggtgt cagtccgtcc ggcgtccgct cccgatgccg
     7021 gggcgctggc gcaggtggct gcggcgacct tcgcgttggc gtgccccccg cacgtgtcgg
     7081 ccgagtcgat cgagacgttc gtgcgaacgg tcctgtccca ggagcggttc gaggagtacc
     7141 tggccgaccc ggcgcgggac ctgttcctcg ccgagaatga cggcgccgcc gtgggctacg
     7201 cgatgctcgt gaccggggag cctgaggatc cggaggttcg ggccgccctg tccctcgagc
     7261 cgacagccga gctcagcaag atctatgtcc tcccgcaggc ccacggcggc gctgtcgccg
     7321 ctgagctcat ggccgcagct ttggatgccg cccgccgacg aggcgccgcg ggggtgtggt
     7381 tgggcgtcaa ccagctcaac cagcgcgccc agaagttcta ctccaagagc ggattcgcca
     7441 gggtgggcag caagcggttc cgcgtcggtg accggtacga ggacgacttc gtctatgagc
     7501 tggcggtggg cgcgctgtga gcgggctggg cgacttgtcg gggaaccctt cacgggaacc
     7561 cgacaatggg cctagagtcc tacctcggtt gtcctttggg acgactcggc cgtggggagc
     7621 catctggcac aaaagaactg ccatacatga acagcagaac acgaccgatg gaggcaaacg
     7681 gtgagccgtc ccacgttcag cgtcaggcgt gtctcggagg agaatgagga ctccttcgtc
     7741 gagttgtgga tggcatcgcg cgtcgaggcc ggcatgagtg ccgaggtcgt cgcccgcgtc
     7801 gcggccgatg gccggctcac cgccaccctt caccgtgagg acgtgcgggc gtacgtggct
     7861 atgaacgacg ggcgcgccgt cggcttcgcc atcgccgcca cgagcccctt ctccgcgctg
     7921 accgaggcgc cgtgcgtgac catcgaccag ctctatgtca gcccgctggc ccgccggcac
     7981 ggcgttgcgc gtcacctgat gagcgcggtc gcgctgtatg ccgactcgcg cggctgcgag
     8041 cagatcgggt gcaacgtacc tgccccgaac cgcgaggcca accggttctt cgcccggctc
     8101 ggcttctcct cgcaggtggt ccgccggatc acgaccgtgg cggccctccg gcgccggttg
     8161 ggtgcggacg agccgcggca tcattcgctg gagcagctgc tgcttcgccg ccgctcgctg
     8221 cgagcgcgtg ccactgccgc cgcctccaac cgcctggccg gctgagcccg actctcagga
     8281 ccctcaggac ccgggagcgg cgtccctgat cagacaggtg atcctgcagg tgcagacgcg
     8341 cttgtcctgg tcatcggtga tcaccacgtc gtaggacgcc agggtgttgc ccagcgagag
     8401 cgcggtcgcc gttccggtga cccagcccga cctcgccgcg cgatgatgcg tggcattgat
     8461 gtccagaccc accgcgatcc gcgcggggcc ggcgtgtagg gccgacccga tcgaccccag
     8521 cgtctcggcg aggaccaccg aggcaccacc gtgcagcagg ccgtagggct gcgtgttgcc
     8581 ctcgacgggc atccgtccga ccacgcgctc cggcgtggcg tcgaggatct cgatctgcat
     8641 ccgacgcatc agggagttcg ggttcatctc ctccatggcg cgcgtggcgt cggcgaacgg
     8701 cgactggtgc tgcatgcggg tgctctcctt aggtggctga ctgcctgtgg gtggctggca
     8761 ataggctgcc acgcgtgagc cgacttctac tcctcgacgg tcattcgctg gcctaccgtg
     8821 cgttcttcgc gttgcc
//
LOCUS       DASYFY010000572         1989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1776376, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000572 DASYFY010000000
VERSION     DASYFY010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1776376"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..999
                     /locus_tag="VGN19_11710"
     CDS             <1..999
                     /locus_tag="VGN19_11710"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEV7196597.1"
                     /translation="VILLVAAAAAAAYFLTRPKQVLVPKVTGEQVSVARATVEQAKFQ
                     VATVPVPNRHPAGIVVAESPAAGTKADRGSTVTLTVSSGQGNASVPSLQGLTEAQATR
                     VLRRAGLRVGNVVAQSSSRFAQGQVTGTNPGTARSVPRGTAVTLFVSSGQPQKKVPNV
                     VGEGQTQATEDLTRAGFDVQQRDQSTPIQSDVGNVISQSPSGNTNAPNGSSVTITVGT
                     APTTVSVPTVTGDPPANAASALTASGFRVAQRTTTVTNPSKNGVVVSQSPAANSTATK
                     GSTVTITIGKLASSSSSSSTTTTSTTTTTTPTTTPTTTPTTTPTTTTTSTSRSPGA"
     gene            996..>1989
                     /locus_tag="VGN19_11715"
     CDS             996..>1989
                     /locus_tag="VGN19_11715"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002378.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase family protein"
                     /protein_id="HEV7196598.1"
                     /translation="MSAQRVAVLAGGRSSEHEISRASGASVAEGLRAAGHAVTEIEIG
                     RDGVWRRDGEPVTVALGSGLPGVDVVFPVLHGPFGEDGTVQGLLECMDVPYVGAGVLA
                     SALCMNKVLFKQLMAELGIPQVDYRAVDQPDFDADPDAIARTVAELGYPVFVKPARLG
                     SSVGIAKVAEPGELEPALRTAFAHDSLVIVEAFAAAREVECSVLGNGDPLASEPGEIL
                     LAAGESGWYDYQAKYTPGGMRLEVPARLDPEIRERIRELAVQTFVKSGCQGLARVDFF
                     VVGADVLVNELNTMPGFTQTSVFGSLFAASGIAYPALLHRLVGLALERHAAERAH"
BASE COUNT          297 a          725 c          691 g          276 t
ORIGIN      
        1 gtgatcctgc tggtggccgc cgcagccgcg gcggcgtact tcctcacccg gcccaagcag
       61 gtgctggtgc ccaaggtcac cggggagcag gtcagcgtcg cgcgcgcgac ggtggagcag
      121 gccaagttcc aggtcgccac ggtcccggtg cccaaccgcc atcccgccgg catcgtcgtg
      181 gccgagtccc cggccgccgg caccaaggcc gacaggggct ccacggtgac cctgacggtg
      241 tccagcggcc agggcaacgc atccgtgccc tcgttgcagg ggttgacgga ggcccaggcc
      301 accagggtgc tgcgccgagc cgggctcagg gtcggcaacg tcgtggcgca gagctccagc
      361 cggttcgctc agggccaggt gaccggcacc aatccgggca cggcgcggtc ggtcccgcgt
      421 ggcaccgcgg tgacgctgtt cgtgtcctcc ggccagcccc agaagaaggt tcccaacgtg
      481 gtgggcgagg gccagaccca ggccaccgag gatctgaccc gggccggctt tgacgtccag
      541 cagcgcgacc agtccacgcc gatccagagc gatgtcggca atgtcatcag ccagagcccg
      601 agcgggaaca cgaacgctcc caacggctcg tcggtcacga tcaccgtcgg gaccgcgccc
      661 accaccgtct cggtgccgac ggtgaccggc gatcccccgg caaacgccgc cagcgcgctc
      721 accgcgtccg ggttcagggt ggcccagcgg accacgaccg tcaccaatcc cagcaagaat
      781 ggcgtcgtgg tctcccagag ccccgccgcc aactccaccg ccaccaaggg cagcacggtg
      841 accatcacga tcgggaagct ggccagctcc tcatcttcct cgtccacgac gacgacctcg
      901 accacgacca cgaccacgcc gacgaccacg ccgacgacca cgccgacgac cacgccgacg
      961 accacgacca cctcgacctc tcgcagcccc ggggcatgag cgcccagcgg gtggcggtgc
     1021 tcgccggagg acgctcttcc gagcacgaga tctcgcgtgc ctcgggcgcc tctgtagccg
     1081 aaggcctgcg cgcggccggc cacgccgtga ccgagatcga gatcggccgc gacggcgtct
     1141 ggcgacgcga cggggagccg gtgacggtgg cgctgggctc cgggctgccg ggcgtcgacg
     1201 tcgtcttccc cgtgctccac ggtcccttcg gcgaggacgg gacggtgcag gggctgctcg
     1261 agtgcatgga cgtgccctac gtcggcgccg gtgtgctggc ctccgcgcta tgcatgaaca
     1321 aggtgttgtt caagcagctc atggcggagc tggggatccc ccaggtggac taccgcgccg
     1381 ttgaccagcc cgatttcgac gccgatcccg acgccatcgc acggaccgtc gccgagctcg
     1441 gctaccccgt gttcgtcaag ccggcgcggc tgggctcctc ggtcggcatc gccaaggtcg
     1501 cggagcccgg ggagctggag cccgcgttgc ggaccgcgtt tgcgcatgac tcgctggtca
     1561 tcgtcgaggc gttcgccgcc gcgcgcgagg tggagtgctc ggtgctgggc aacggtgatc
     1621 ccctcgcgtc ggagccgggc gagatcctgc tcgccgccgg cgagagcggc tggtacgact
     1681 accaggccaa gtacaccccg ggcgggatgc ggctcgaggt cccggctcgg ctggatccgg
     1741 agatccgcga gcggatccgc gagctggcgg tgcagacatt cgtcaagtca ggctgccagg
     1801 gcctggcccg ggtggacttc ttcgtggtcg gcgccgacgt gctggtcaac gagctcaaca
     1861 cgatgcccgg cttcacccag acgagcgtgt tcggctcgct gttcgcggcc agtgggatcg
     1921 cgtaccccgc gctgcttcac cggctcgtgg ggttggcgct ggagcgccac gccgccgagc
     1981 gcgctcacc
//
LOCUS       DASYFY010000573         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_883104, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000573 DASYFY010000000
VERSION     DASYFY010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_883104"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..1253
                     /locus_tag="VGN19_11720"
     CDS             345..1253
                     /locus_tag="VGN19_11720"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7196599.1"
                     /translation="MRSTRVLLTGIVIAVLAAACSSSTTPSSTAASGPSITIGSTNFE
                     EQLIVANMYADVLKHAGAKVTLRANLGTREAVEPALAAGQLDLYPDYAGTLLIFLNSS
                     DTAAATQTSTALPALKSLLGPKGATVLDPAPAIDTNVFAVTQATASQYHLTTLSSLTA
                     DAGKLILGGPPECPTRPTCELGLQNTYGLHFKSFTSLDEAGPITVSALKSGEVQVAEL
                     FSSDGNIVQNHFVQLTDDKHLQPADYLIPVIRKSVNTAAVSAALNGLSAKLTTDELSN
                     LNIKVNVNHEDPGTVAQQWLQQNHLL"
     gene            1289..>1626
                     /locus_tag="VGN19_11725"
     CDS             1289..>1626
                     /locus_tag="VGN19_11725"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7196600.1"
                     /translation="MTYDVEGRNVLVTGASSGIGAGLAEALAQAGAVVGICARRQDRL
                     AEVLERCRAHSPSSRMWVTDLADPAAVDALAAAALKELGRVDVLVNNAGIPKRRHVSK
                     LDAATVDALM"
BASE COUNT          291 a          588 c          524 g          223 t
ORIGIN      
        1 cagcggtcgc cgtccggtgg ggtcgggctc ggcgcgattg gccaccacga cgacgacgaa
       61 gatgccgacg agggcgatca ggacaaagaa gaccccaaat atggacagaa gcaccgcagg
      121 caggatcgag agtccgcctg aggtgatggg ggtggacacc gcgccagtct ggggccctgg
      181 ggtcccggcg tcaacgatca accggtgtgc gctgtggaca accactcgac cggcggctca
      241 tggcgggcta acttcctcgc accacgacac ggccacgctg gatggcgtcg cttcaagtcg
      301 atcacacgga ttgaatcagc ggattcgttc ccccaggagg aaccatgcga agcacccggg
      361 tcctgctcac cggcatcgtg atcgccgtgc tggcggcggc gtgcagctca tcgacgacgc
      421 cctcgtccac agccgcctcg ggcccgagca tcacgatcgg ctccaccaac ttcgaggagc
      481 agctgatcgt ggccaacatg tacgcggacg tgctcaagca cgccggagcc aaggtcaccc
      541 tgcgcgccaa cctgggcacg cgcgaggcgg tcgagcccgc cctcgccgcg ggccagctcg
      601 acctctaccc ggactacgcg ggcacgctgc tcatcttcct caacagcagt gacaccgcgg
      661 cggccaccca gacctcgacg gcgttgcctg cgctcaagag cctgctcggg cccaagggcg
      721 ccaccgtcct cgaccccgcg ccggccatcg acaccaatgt gttcgccgtg acccaggcca
      781 ccgccagcca gtaccacctg accacgttgt cgagcctcac ggcggacgcg ggcaagctca
      841 tcctgggcgg gccgcccgag tgcccgacgc gccccacgtg cgagctcggc ctgcagaaca
      901 cctacgggtt gcacttcaag tccttcacgt cgctcgacga ggccggcccc atcaccgtgt
      961 cggcgctgaa gtcgggcgag gtccaggtgg ccgagctctt ctcgagcgac ggcaacatcg
     1021 tgcagaacca cttcgtgcag ctcaccgacg acaagcacct gcagccggcc gactacctca
     1081 tcccggtgat ccgcaagtcg gtgaacacgg ccgcggtctc ggccgcgctc aatgggctgt
     1141 cggccaagct caccaccgac gagctctcga acctcaacat caaggtcaac gtcaaccacg
     1201 aggacccggg caccgtcgcg cagcagtggt tgcagcagaa ccacctgctc tgaggcgaca
     1261 cggaggatcg tcgagcacag ggggcacgat gacatacgac gtcgagggcc ggaacgtgct
     1321 cgtgaccgga gcctcgtcgg gcatcggggc cgggctggcc gaggcactgg cccaggcggg
     1381 agcggtcgtc ggcatctgcg cacggcgcca ggaccgtctg gccgaggtgc tcgagcggtg
     1441 ccgggcgcac tccccgtcgt cgcggatgtg ggtcaccgac ctcgccgacc ccgctgccgt
     1501 ggacgccctc gcggctgctg ccctgaagga gctcggccgc gtggacgtgc tcgtcaacaa
     1561 cgccggcatc cccaagcggc gtcacgtctc gaagctcgat gccgccacgg tggacgccct
     1621 catgca
//
LOCUS       DASYFY010000574         6565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_94576, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000574 DASYFY010000000
VERSION     DASYFY010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6565
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94576"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1172)
                     /locus_tag="VGN19_11730"
     CDS             complement(<1..1172)
                     /locus_tag="VGN19_11730"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196601.1"
                     /translation="MSVHVSGARPLDRTLTVTGRAGWRVAALLCVLLLVRLPATAPAY
                     GLALMGARSPVAFACATATVFNASGSPTRLFAQAPAGSGSAFTAVGGASGVQYNAIGF
                     NTEDGLIYAVSGPNGGLAPGHLVVVDSSGAVFDRGAITGIPGAELARGVNAGSFDNAG
                     GFWVAAGGSTASGRLYRVDLATRVAAPLVGQTAPVRALDVTFADGFLWGAGSANTVVR
                     VDLASGAVTTIGVPALPAGPFPAAWTHPDGHLGFDSASGAVVELAVSQPGGAAPRFTL
                     VRSSPGLAFSANDGTSCSPLPVDLATDITGPTRRTAGSAVTWTLAVQNRGANASSGFV
                     VKDVVPTGYTGISAATGGCSVTGSAVRCHGGGLAPGAHTVITITASAPRSLGCLTNT"
     gene            complement(1335..1550)
                     /locus_tag="VGN19_11735"
     CDS             complement(1335..1550)
                     /locus_tag="VGN19_11735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196602.1"
                     /translation="MVVVPADYLDDLARAVERLQWLATESEGRAEGGDPLSLFDALRE
                     VYAASQLLVNPGVARPHRPLVSAPAPS"
     gene            complement(1638..3182)
                     /locus_tag="VGN19_11740"
     CDS             complement(1638..3182)
                     /locus_tag="VGN19_11740"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7196603.1"
                     /translation="MSVPIDLSEVDDLELTSRAREGEDRAVVELWTRHYPAALATARR
                     VARQPRDAEELAADAFSGMLAALRSGGGPTGSVRAYLLTSVRNGVTTRARRANAADVL
                     TAETTVLENAADVPADPVAAAGELSLMREAFAALPTRWQHVLWRTAVDHESNITVGEE
                     LGLSANAVAALARRARQGLRAAYVQVHVSRGAVDPGCVPYIGGLAALLTTPDSTSETA
                     LHVRGCARCTERLAELRRVDRNLSGVLTPALLTLFHGGAGAALVAASSGAGAISAAAS
                     SGASASSGAGGVSGGAAGGSTTTLGAGSWVTIATAATVVGAALVLAAWPREAPGHATA
                     TTKPAVSASVPRQTPTTPTRATSATTSTRPRPSRPTPKPSPPVAVPPVARPPVATPAP
                     PAPSTTPPPGSLSVGLAMAGSAQSPFVLVSVSGQRIVGALSLALTVPEGVSLRGSTGA
                     WTNCAQSGRAIRCTAGASSSAAWSGSISTTWEPGTGGSVAAIVTGTDRSGRRVSASAA
                     TTWPSP"
     gene            complement(3243..3548)
                     /locus_tag="VGN19_11745"
     CDS             complement(3243..3548)
                     /locus_tag="VGN19_11745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196604.1"
                     /translation="MGVDAWRDDSEPRPMASALGDFMVELGVAEMDLPHIVLCRDSKG
                     ATASFSGPYPSAVEALVAADCEHRLESASDGIDAVTFQVAALYPALTPAPGDRRARG"
     gene            complement(3619..3921)
                     /locus_tag="VGN19_11750"
     CDS             complement(3619..3921)
                     /locus_tag="VGN19_11750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196605.1"
                     /translation="MEIPPEDPAAHALRGRFSDFLTEMARAEMDLPHVVYSKDAQGTM
                     ASFSGPYLTAIEACVAADIEHQIDLECDGSPTLTFHVAPLYPALATPGVTPGIEEE"
     gene            4137..5351
                     /locus_tag="VGN19_11755"
     CDS             4137..5351
                     /locus_tag="VGN19_11755"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEV7196606.1"
                     /translation="MDRVPPTERLVRDGNGVETILAGRYELRSVLGRGGMSEVYAAWD
                     TTLLREVAVKRLHASAATDEGRQRSEARLMASLNHPNLVWVYDAHLEGPHPFFVMELV
                     PGPNLAQWLHDHGTLSPTVVTRFGLQLAGALAHIHERGLVHRDVKPANILLASELDAK
                     LADFGIARITGATRVTATGAVLGTAAYLSPEQVQGSPVGPGSDVYSLGLVLLECLTGQ
                     VAYPGPLVESAVARLHRRPEVPAGLGAVGELLEAMTAPDPEHRPTATRVAEALGQPSS
                     PEAADGGAGRWSGNRTAAGETVSLQNPTAMQNPTSLQNPTSMQNPTRILALEPDPQPP
                     THRTINFAPSRLRRLEPRRMIALGAAAFLVVVAVIGVSALASGTSTPVKYPSVTGQLG
                     RDLQRLQQSVKP"
     gene            5348..5740
                     /locus_tag="VGN19_11760"
     CDS             5348..5740
                     /locus_tag="VGN19_11760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196607.1"
                     /translation="MRRALTTTTVLTAVWALAACSSGASPTTLENDALAVTTAAATHD
                     AGATAAAVRRLRADVAAARRSGTINAPHAAAIESAAQRVLVDLRGPTPAPSTTPSPTV
                     VTPSVGDTKAKDTKGNGNGDGGGGGGGD"
     gene            complement(5787..>6565)
                     /locus_tag="VGN19_11765"
     CDS             complement(5787..>6565)
                     /locus_tag="VGN19_11765"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HoxN/HupN/NixA family nickel/cobalt transporter"
                     /protein_id="HEV7196608.1"
                     /translation="LGHSSVVVVMVMLLSTGIKSFATGLGDRSPLRQAASVWGTSISG
                     LFLLLIGLINLAALVAIVRVFRSMRGNQFDEATLERALGQRGLLNRVLGPATRAVRKP
                     AHMWFVGLLFGLGFDTVTEVGLLVLAGGAAASSLPWWAILVMPILFAAGMSLLDTIDG
                     SFMNFAYGWAFSKPVRKVYYNLTITALSVAVALLIGGIELASVLSDKLQIRTGPLAAV
                     GSISLEGVGYWIVGLFVVTWMLALAIWRFGRVEQRWQAGP"
BASE COUNT         1129 a         2284 c         2278 g          874 t
ORIGIN      
        1 gtgttggtca ggcatccgag gctgcgcggg gctgacgctg tgatggtgat gacggtgtgg
       61 gctcccggcg cgagcccacc accgtggcag cgaacggcgc tacccgtcac cgaacatccg
      121 ccggtcgccg cagagatacc cgtgtagcca gtcggtacga cgtccttcac gacaaagccc
      181 gagctcgcgt tggcgccccg gttctgcacg gccaatgtcc aggtgactgc tgaacccgcg
      241 gtccgtcggg tcgggccggt gatgtcggtc gccaggtcga ccgggagcgg tgagcatgag
      301 gtgccgtcat tcgcgctgaa ggcgagaccg ggactgctac gcaccagggt gaacctcggt
      361 gccgccccgc ccggctggct gacggcgagc tccacgacgg cacccgacgc gctgtcgaac
      421 cccagatgcc cgtcgggatg ggtccaagcc gcaggaaacg gcccggccgg cagcgctggg
      481 acgccgatgg tagtgaccgc gccactggcg agatccaccc gcaccacggt gttggcagag
      541 ccggcacccc acaggaaccc atcggcgaag gtgacgtcca gggctcgcac gggcgcagtc
      601 tgaccgacca gcggcgccgc caccctggtt gccaggtcga cgcggtacag gcgacccgag
      661 gccgtggaac cccctgcagc gacccagaag ccgccggcgt tgtcgaagct ccccgcattg
      721 accccgcgcg cgagctcggc gcccggaatc ccggtgatcg cgccccggtc gaagacggct
      781 ccggagctgt cgacgaccac gagatggccg ggcgccagcc cgccgttggg tccgctgacg
      841 gcgtagatga gcccgtcttc ggtgttgaag ccgatggcgt tgtactggac tccggaggct
      901 cctcccactg cggtgaaggc cgagcccgac cccgcagggg cctgggcaaa caggcgggtc
      961 ggggagccac tggcgttgaa gacggtggcg gtcgcgcacg cgaaggccac gggagaccga
     1021 gcacccatca aggccagccc gtatgccggt gcggtcgcgg gcagccgaac gagcaacagg
     1081 acgcagagaa gtgctgcgac acgccagccg gcgcgtcccg tgaccgtcag ggtgcggtcg
     1141 agaggtcggg ccccggaaac gtgcacactc acgccccccg ccctctgaaa agcccaccaa
     1201 ggcgtgaccc atcgatcgaa agggccacct ttctctctag gagtcggaac cgggaagtac
     1261 gtgacgctcg acagcaagaa atctgtggca gctcggctgg gcggggatga atgggccggg
     1321 tgcccgcctt cccgtcagct gggagcaggc gccgagacca gggggcgatg tggacgcgcc
     1381 actccagggt tcaccagcaa ctgagacgcg gcatacacct cgcgcagcgc atcgaacagc
     1441 gacagcggat cgccaccctc tgcgcggccc tcactctcgg tggcaagcca ttggagtcgt
     1501 tcgacggcac gcgcaaggtc atcgagatag tccgctggga cgacaaccat cccgtggagc
     1561 aatgtgacct cctgaagttc gaggagtcag cggccgcgtc cgcgaaccgg acgcccgcac
     1621 aagggaaggc tcgtcactca gggcgacggc caggtggtcg cggcggaggc actgaccctc
     1681 cggccggacc gatcggtgcc ggtgacgatg gcggcgaccg aaccgccggt ccccggctcc
     1741 caggtcgtgg agatggagcc tgaccaggcc gccgaggacg acgcacccgc cgtgcaccga
     1801 atagcgcgac cagactgagc gcagttcgtc caggcgcccg tcgagccgcg cagactgacc
     1861 ccctcgggca cggtcagcgc cagggaaagg gcgccgacga tgcgctgccc cgataccgag
     1921 accagcacga atggcgactg ggctgaccca gccatcgcca gacctaccga caacgagccc
     1981 ggcggcggcg tcgtggacgg ggccggtggt gctggggtgg caactggcgg cctggcaacc
     2041 ggcggcaccg ccacgggggg cgagggtttg ggcgtaggcc gcgacgggcg gggtcgggtg
     2101 gaggtggtag cgctggtcgc tctcgtgggg gtcgtgggcg tctgcctcgg gacggacgca
     2161 ctcacggcgg gcttggtggt cgcagtcgcg tgcccgggcg cctcgcgcgg ccaggcggcc
     2221 aagaccagag cggcgccaac cacggtcgct gctgtcgcga tcgtgaccca gctaccggct
     2281 ccgagggtgg tcgtcgagcc acccgcagca cccccggaca cgccccctgc gccgctcgac
     2341 gccgaggccc cactcgatgc ggccgcgctg atcgcaccgg caccactcga tgccgccacg
     2401 agggcggcgc cggccccacc atggaagagg gtcaggagcg cgggcgtcag caccccggac
     2461 aagtttcggt cgacccgacg cagctcggcg agtcgttcgg tgcaccgagc gcagccacgc
     2521 acatgcagtg cggtctcgct cgtggagtcc ggggtcgtca gcaacgccgc caggcctccg
     2581 atgtacggca cacagcccgg gtccacggcg ccccgggaca catggacctg gacgtatgcc
     2641 gcccgaagtc cctgacgagc gcggcgggcc agcgcagcca cggcgttggc actcagcccg
     2701 agctcttcgc cgacggtgat gttggactcg tggtcgacgg ccgtacgcca caggacgtgc
     2761 tgccagcggg tcggcagggc ggcaaacgcc tcccgcatca ggctcagctc gccggccgct
     2821 gccaccgggt cagcggggac gtcggcggcg ttctcgagga cggtcgtctc ggcggtgagg
     2881 acgtccgcgg cgttggcccg gcgggcacga gtcgtcacgc cgttgcgcac ggacgtcagc
     2941 aggtaggcgc gcaccgagcc cgtcggccca cccccggacc tcagggcagc caacatcccg
     3001 gagaaggcgt cagcagccag ctcctccgcg tcgcgcggtt gacgcgcgac acgccgggcg
     3061 gtcgcgagtg cggcggggta gtgccgagtc cacagctcga cgacagcgcg gtcctcgccc
     3121 tcgcgagccc gggaggtgag ctcgagatcg tcgacctcgg acaggtcgat ggggacgctc
     3181 accgggggtg ctcgtcagtg ccatggcgtg aggtacggcg tgaatcctca ccgtgacggc
     3241 ggtcagccac gtgcgcgacg atcgcccgga gcgggggtta gcgctggata cagagcggcc
     3301 acttgaaagg tcacagcatc gataccgtcg gacgcggact cgaggcggtg ctcgcagtcg
     3361 gctgccacca acgcctcgac tgcggagggg tatggaccgc tgaaggacgc cgtggcgcct
     3421 ttggaatccc ggcacaggac gatgtggggg aggtccatct cagccacgcc cagctcgacc
     3481 atgaagtcac ccaaagcact ggccataggc ctcggctcgg agtcatctct ccaggcgtcc
     3541 acacccatgg ccatctcctt gtgctccgtg ctgacctcaa ggagacgcgt gagagggctc
     3601 gtcatgacgc tcgtggcgct actcttcctc gatcccgggc gtcacacccg gcgttgccag
     3661 cgctggatac agcggcgcga cgtggaaggt cagcgtgggc gacccatcgc actccaggtc
     3721 gatctggtgc tcgatgtccg cggcgacgca ggcttcgatg gccgtgaggt acgggccgga
     3781 gaaagaagcc atggtgcctt gcgcgtcttt ggagtacacg acgtgaggca ggtccatctc
     3841 ggcgcgagcc atctcggtca agaagtcgct gaacctgccc cgcaacgcgt gagcggcggg
     3901 gtcctccggg ggaatctcca tgaccgacac ctcctggctc tgcacgtcgg cgtgcggcga
     3961 gacgatgggg tcccgcccgt gacccgcccc ctccaacagg tcacacgcga gacaccaggc
     4021 ggcctggtgc cgccgtcacg actaattgac tagtcgcccc gcgattcgtg acgaaagatc
     4081 tggccccgtc gggcacgaag gtgggcggca accgcggcga cggcatactg gggcgcatgg
     4141 atcgcgtgcc cccgactgaa cgactcgtgc gcgacgggaa cggcgtggag acgatcctcg
     4201 cggggcggta cgagctgcgc agcgtgctcg gacgcggcgg aatgtccgag gtgtatgccg
     4261 cgtgggacac caccctgctg cgcgaggtgg cggtcaaaag gctccatgcc agtgcggcga
     4321 ccgacgaagg tcgccagcgg agcgaggctc gactcatggc ctccctgaac catccgaacc
     4381 tcgtctgggt ctacgacgcg cacctcgagg gacctcatcc gttcttcgtg atggagctcg
     4441 tccccggccc caacctcgcc cagtggctcc acgaccatgg caccctgtcg cccactgtcg
     4501 tgacccgctt cggcctccag ctggcgggcg ccctcgccca catccacgaa cgcgggctgg
     4561 tgcatcggga cgtcaagccg gccaacatcc tgcttgcctc cgagttggac gccaagctgg
     4621 ccgacttcgg gatcgcccgc atcaccgggg cgacaagggt gaccgccact ggcgcggtcc
     4681 tgggtacggc ggcatacctc agtccggagc aggttcaggg aagcccggtt gggccgggca
     4741 gcgatgtgta ctccctcggc cttgtcctgc tggaatgcct gaccgggcag gtcgcgtatc
     4801 cggggccgct ggtggagtcc gccgtcgcgc ggctgcaccg gcggccggag gtacccgctg
     4861 gtctcggagc tgtcggcgag ctgctcgagg cgatgaccgc ccccgatcct gagcaccgtc
     4921 cgaccgccac ccgcgtggca gaagcactgg gtcagccatc ctctcccgag gcggcggatg
     4981 gtggagcggg gcggtggtct gggaacagga ccgcggccgg cgaaaccgtg tccctgcaga
     5041 acccgacggc gatgcagaac ccgacgtccc tgcagaaccc gacgtcgatg cagaacccga
     5101 cgcggattct cgctctcgag cccgaccccc agcccccaac acacaggact atcaacttcg
     5161 caccgagccg cctccggcgc cttgaaccgc ggcggatgat cgcactcggc gctgcggcgt
     5221 tcctggtcgt ggtcgccgtc atcggagtca gcgcactggc cagcgggacc tcgacaccgg
     5281 tcaagtaccc ctccgtgaca ggtcagctcg gccgggacct ccagagactg cagcagtcgg
     5341 tgaagccatg aggcgagcgc tcaccacgac cacggtcctc acggctgtct gggctctggc
     5401 ggcctgttcc tcaggtgcca gccccaccac tctcgagaac gacgccctcg cggtgacaac
     5461 ggcggcagcc acgcacgacg cgggcgccac cgccgccgct gtacgcagac tccgggctga
     5521 cgtcgcggca gcacgacgct ccgggacgat caatgccccg catgcggccg ccatcgagtc
     5581 ggctgctcaa cgggtcctcg tcgatctccg aggcccgacg ccggcaccca gcaccacccc
     5641 ttcgccgacc gtggtgacgc cctcagtcgg cgacaccaag gccaaagaca ccaaaggaaa
     5701 cggcaacggc gacggcggtg gcggtggcgg tggcgactag gacctggtga ccacggcggg
     5761 ggccgcgaaa gcagccggaa gaacggctac gggccggctt gccagcgctg ctccacccga
     5821 ccgaagcgcc agatggccag agccagcatc caggtcacca cgaacaggcc aacgatccag
     5881 taccccacgc cctcgaggct gatcgagccc accgcggcga gcgggccggt ccggatctgg
     5941 agcttgtcgc tcaagaccga ggcgagctcg atgccgccga tcagcagggc tacggcgacg
     6001 gacagcgccg tgatggtgag gttgtagtag accttccgca ccggcttgga gaacgcccag
     6061 ccgtacgcga agttcatgaa cgacccatcg atcgtgtcga gcagcgacat tccggcggcg
     6121 aacaggatcg gcatgaccag aatcgcccac caagggaggc tggaggctgc tgcgccaccc
     6181 gccagtacga gcagcccgac ctcggtcacg gtgtcgaagc ccaagccgaa gaggaggccg
     6241 acgaaccaca tgtgtgccgg cttgcgcacc gcgcgggtcg cagggcccag aacccggttc
     6301 agcagtcccc gctggcccag cgcgcgctcg agtgtggctt cgtcgaactg gttgccccgc
     6361 atggaacgaa acacccggac gatggccacg agcgcggcca ggttgatcaa gccgatgagc
     6421 agcagaaaca gtcccgagat ggaggttccc cacaccgacg cggcctgtcg cagcggagac
     6481 cggtcaccca ggccggtcgc gaacgacttg atcccggtgg acagcagcat caccatgacc
     6541 acgacgaccg acgagtggcc caggc
//
LOCUS       DASYFY010000575         4352 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1461730, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000575 DASYFY010000000
VERSION     DASYFY010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1461730"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..695
                     /locus_tag="VGN19_11770"
     CDS             <1..695
                     /locus_tag="VGN19_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional ornithine
                     acetyltransferase/N-acetylglutamate synthase"
                     /protein_id="HEV7196609.1"
                     /translation="AVAARDGWSVGGMAKGAGMLAPALATMLVVVTTDAVVQPDQLEG
                     VLRAATSATFDRIDSDGCQSTNDTVLLMASGTSGVEVEVSALGQAVTEVCASLARQLI
                     GDAEGANHDIAIEVRTAATESDALEVGRAIARNNLFKCAVFGNDPNWGRVLAAVGTTR
                     AAFEPNQLDVSINGIEVCRAGGVGEDRTLVDLEPREVLVTVDLHAGDAAATIWTNDLT
                     HDYVHENSAYSS"
     gene            692..1642
                     /gene="argB"
                     /locus_tag="VGN19_11775"
     CDS             692..1642
                     /gene="argB"
                     /locus_tag="VGN19_11775"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEV7196610.1"
                     /translation="MTTPLHSTNTVRGHIGAAALRVAQAKAQTLVEALPWLERFRGAL
                     VVVKYGGNAMVDDTLKAAFAQDVAFLRYAGLRPVVVHGGGPQIAAMLERLGLTSEFRG
                     GLRVTTPEVMDVVRMVLTGQVGRELVGLLNQHGPVAVGLSGEDAGLFGARRRGTEVDG
                     ETVDLGLVGDVETVNPGAVQDILDAGRIPVVSTVAPDLDEEGQVLNVNADTAAAALAV
                     ALQAHKLVMLTDVEGVYASWPDPDSLLSSLSVSGARELLQRVDAGMIPKLEACIRAVD
                     QGVPQAHVIDGRQPHSLLLEVFTSEGIGTMIVPDRDGEGA"
     gene            1639..2844
                     /locus_tag="VGN19_11780"
     CDS             1639..2844
                     /locus_tag="VGN19_11780"
                     /EC_number="2.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine transaminase"
                     /protein_id="HEV7196611.1"
                     /translation="MTASRNVELLQRYQRAVMGVFGLPPLVLSHGDGCYVWDVEGRRY
                     LDLVGGIAVNALGHGHPALVSAISKQAAEAIHISNLFTSLPQICLAERLLEIAQAPEG
                     SAVFFANSGAEAIEAAIKLSRRTGRSGLVAAEGAFHGRTTGALALTHKLAYREPFQPL
                     IPAVTHVPYGDEAALRAAVGPETAAVVLEPLQGEAGVVSPGAAYLRAAREVTLEHGAL
                     LILDEIQTGIGRTGSWFAFQQAGVVPDAITVAKGLGGGVPIGALVAFGPQVAGLLTAG
                     QHGSTFGGNPLAASAGLAVIDTIEEQGLLEHAARAGEHFAQGVLALRHPAITGVRGAG
                     LLRAVTLAAPVAAQVAAAARTAGFIVNPVAPDALRLAPPLVVTTDQLDTFVAALPALL
                     DSITTEDLP"
     gene            2841..3815
                     /gene="argF"
                     /locus_tag="VGN19_11785"
     CDS             2841..3815
                     /gene="argF"
                     /locus_tag="VGN19_11785"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015882859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEV7196612.1"
                     /translation="MSSPDSSTTSSVPSLRHFLRDDDLSAEEQAIVLQRARDLKAAPF
                     SRRPLEGPQIVSVLFDKPTLRTQVSFEGAIAHLGGHPLVVDANLAQVGVRESIADTAR
                     VLGRQSAAIVWRTYGQDRLEEMARHAGVPVVNALTDQFHPCQILADLLTITEHQGALA
                     GLTLGYVGDGANNMAHSYLLGGALAGMHVRIGTPNGHQPDPAILSRAVELAAAQGGSV
                     LVTADPVEAVRGVDAVVTDTWVSMGMEAEKGDRQGVASPFAAFAVTEELMGYAASDAI
                     FLHCLPAYRGHEVAAAVIDGAQSVVWDEAENRLHAQKAVLSFLLEGSR"
     gene            3812..4312
                     /locus_tag="VGN19_11790"
     CDS             3812..4312
                     /locus_tag="VGN19_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEV7196613.1"
                     /translation="MTLAATRTARQRRIVKILGRHAVRSQTHLLGLLADDGIEVTQAT
                     LSRDLLELGAVKVRSGRSLVYALPGEGGDRTARAAPAAHEHTDRLRRVCEELLVTAEP
                     SHNLVILRTPPGAANFLASAVDHAEIAEVLGTIAGDDTIMVITTGPAASRRTTDHLLA
                     LAGQGE"
BASE COUNT          627 a         1564 c         1521 g          640 t
ORIGIN      
        1 aagccgtcgc cgcccgcgac gggtggtccg tcggcgggat ggccaaggga gcgggcatgc
       61 tcgccccggc cctcgccacg atgctcgtcg tcgtcaccac cgacgccgtc gtccagcccg
      121 accagctcga aggggtgctc cgcgctgcca cctctgccac gttcgaccgc atcgactccg
      181 acggttgcca gtccaccaac gacacggtgc tgctgatggc gtcgggaacc tctggggtgg
      241 aggtcgaggt gtccgcgctc ggacaggccg tcaccgaggt gtgcgcgagc ctggcccgac
      301 agctcatcgg cgatgcggag ggcgccaacc acgacatcgc gatcgaggtc cgtaccgcgg
      361 cgaccgagtc cgatgcgctc gaggtaggcc gggccatcgc ccgcaacaac ctgttcaagt
      421 gcgcggtctt cggcaacgac cccaactggg ggcgcgtact ggcggcggtc ggcacgaccc
      481 gggcggcatt cgagccgaac cagctcgacg tctcgatcaa cggcatcgag gtatgccggg
      541 ccggtggggt gggagaggac cgcaccctcg tcgacctcga gccacgcgag gtgctggtca
      601 ccgtcgacct ccatgccggc gacgcggccg ccacgatctg gaccaacgac ctgacgcacg
      661 actacgtcca cgagaactcg gcctactcct catgacgacg ccactgcatt ccaccaacac
      721 cgtccgcggt cacatcgggg ccgcggccct gcgagtggcc caagccaagg cgcagaccct
      781 cgtcgaggcg ctgccctggc tcgaacggtt ccgtggggcc cttgtcgtgg tgaagtacgg
      841 cggtaacgcc atggtcgacg acacgctcaa ggccgctttc gcccaggacg tggccttcct
      901 tcggtatgcc gggctgcgac ccgtcgtggt gcacggggga ggcccgcaga tcgccgcgat
      961 gctggagcgg ctgggtctga ccagcgagtt ccgtggcggc ttgcgggtca ccacccctga
     1021 ggtgatggat gtcgtccgga tggtgctcac cggtcaggtg ggtcgcgagc tggtcggact
     1081 gctcaaccag cacgggcccg tcgccgtggg cctctcaggc gaggatgccg gcctgttcgg
     1141 tgcccgacgc cgtggcacgg aggtggacgg cgagactgtc gacctcgggc tggtgggcga
     1201 tgtcgagacc gtgaaccccg gcgccgtgca ggacatcctc gacgccggcc ggatccccgt
     1261 ggtctccact gtggcaccgg acctcgacga ggagggccag gtcctcaacg tcaacgccga
     1321 cacggcggcc gccgcgctcg cggtggcgct gcaggcccac aagctcgtga tgctgaccga
     1381 tgtcgagggg gtgtacgcca gctggcccga ccccgactcg ctgctgtcgt cgctgtcggt
     1441 gagcggcgcc cgggagctcc tgcagcgcgt cgacgccggc atgatcccca agctcgaggc
     1501 ctgtatccgg gccgtggacc agggcgtgcc gcaggcgcac gtcatcgacg gtcggcagcc
     1561 gcactccctc ctgctcgagg tgttcacctc cgaggggatc ggcacgatga tcgtcccgga
     1621 ccgcgacggg gagggcgcat gaccgccagc cggaacgtcg agctgctgca gcgctaccag
     1681 cgcgccgtca tgggggtgtt cggtctcccg ccactggtcc tgtcgcacgg ggacggctgc
     1741 tacgtgtggg atgtcgaggg tcgtcgctac ctcgacctcg tcggcggcat cgccgtgaac
     1801 gccctcgggc acgggcatcc cgccctggtc agcgccatca gcaagcaggc ggccgaggcg
     1861 atccacatct ccaacctgtt cacctcgctg ccccagatct gcctggccga acgactactg
     1921 gagatcgccc aggcacccga ggggtctgcg gtcttcttcg ccaactcggg agccgaggcc
     1981 atcgaggcgg ccatcaagct gagccgccga accgggcgca gtggtctggt cgcggccgag
     2041 ggtgccttcc atgggcgcac gaccggcgct ctcgcgctca cccacaaact ggcgtaccgc
     2101 gagccgttcc agccgctgat tcccgcggtg acccacgtgc cctatggcga cgaagcggcg
     2161 ctgcgggccg cggtgggacc ggagaccgct gcggtcgtcc tcgagccgct ccagggtgag
     2221 gcgggcgtcg tctcgcccgg agcggcatac ctgcgggcgg cgcgcgaggt gacgctcgag
     2281 cacggtgcgc tgctcatcct cgacgagatc cagaccggga tcggacgtac cggcagctgg
     2341 ttcgccttcc agcaggccgg cgtcgtcccg gacgcgatca cggtggccaa gggcctgggc
     2401 gggggagtgc ccatcggggc gctggtggcc ttcggtcctc aggtagccgg gctgctgacg
     2461 gccggccagc acggcagcac cttcggtggc aacccgctgg ccgcaagcgc cggtctcgcg
     2521 gtcatcgaca cgatcgagga gcagggcctg ctcgagcacg ccgccagggc cggagagcac
     2581 ttcgcccagg gcgtgctggc cctgcgccac ccggcgatca ccggggtgcg aggtgccggt
     2641 ctgctgcgcg cggtgacgct tgcggccccg gtcgcggcgc aggtcgcggc tgccgcccgt
     2701 accgcggggt tcatcgtcaa cccggtggcc cccgacgccc tgcggctcgc gccgccgttg
     2761 gtggtcacca ccgaccagct cgacaccttc gtggccgcgc tgcccgccct gctcgactcg
     2821 atcaccacgg aggacctgcc atgagctcgc cggacagctc cacgaccagc tctgtcccca
     2881 gcctgcgtca cttcctgcgg gacgacgatc tcagcgccga ggagcaagcc atcgtcctgc
     2941 agagggctcg cgacctcaag gctgcgccgt tctcgcggcg tccgttggag ggaccacaga
     3001 tcgtgtccgt gctcttcgac aagcccacct tgcgcaccca ggtctcgttc gagggggcca
     3061 tcgcccacct tggcggccac ccgctggtgg tggacgccaa cctggctcag gtgggcgtgc
     3121 gggagtccat cgcggacacc gcacgggtcc tgggccgcca gtcggcggcc atcgtctggc
     3181 gcacctacgg acaggaccgt cttgaggaga tggcgcgcca cgccggggtc ccggtcgtca
     3241 acgcactgac cgaccagttc cacccgtgcc agatcctcgc cgacctgttg accatcaccg
     3301 agcaccaggg cgccctggcc ggcctcaccc tggggtacgt cggcgacggc gcgaacaaca
     3361 tggcgcactc ctatctcttg gggggtgcgc ttgcggggat gcacgtgcgc atcggcactc
     3421 ccaacggaca ccagcccgac ccggcgatcc tgagccgggc cgtcgagctg gcggccgccc
     3481 agggcggctc ggtcctggtg accgccgatc ccgtcgaggc cgtccgtggg gtcgatgccg
     3541 tcgtcaccga cacctgggtg tcgatgggga tggaagccga gaagggggac cggcagggtg
     3601 tcgcgagtcc gttcgccgcc ttcgccgtga ccgaggagct gatggggtat gccgcgtccg
     3661 acgcgatctt cctgcactgc cttccggcct accgggggca cgaggtcgct gcggccgtga
     3721 tcgacggcgc gcagtcggtc gtctgggacg aggccgagaa ccggctgcat gctcagaagg
     3781 ccgtgctctc cttcctgctc gagggttccc gatgaccctc gcggccactc gcactgcccg
     3841 acagcggcgc atcgtcaaga tcctcgggcg gcacgcggtg cgctcgcaga cccacctgct
     3901 cggcctgctc gccgacgacg ggatcgaggt gacccaggcg acgctctctc gggacctgct
     3961 ggagctcggc gcggtcaagg tgcggtccgg caggtcgctg gtctatgccc taccgggcga
     4021 gggcggggac cgcacggcgc gcgcggcgcc ggccgcgcac gagcacaccg accggctcag
     4081 gagagtgtgc gaggagctgc tggtcaccgc agagccttcg cacaacctgg tgattctgcg
     4141 caccccgccg ggcgccgcga acttcctggc gtcggcggtc gaccacgcag agatcgccga
     4201 ggtcctgggc accatcgccg gcgatgacac gatcatggtg atcaccaccg gcccagccgc
     4261 cagccgacgc accaccgacc acctactcgc actggccggc cagggcgagt gagccgggcc
     4321 tcgacggtga gcacccggca tacccgcacc ct
//
LOCUS       DASYFY010000576         2046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1514003, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000576 DASYFY010000000
VERSION     DASYFY010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1514003"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VGN19_11795"
     CDS             <1..840
                     /locus_tag="VGN19_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7196614.1"
                     /translation="FLGPNGAGKSTTLRILLGLLRSDGGSVTLLGRDPWRDATELHRQ
                     LAYVPGDVVLWPNLTGGEVIDLLGRLRGGVDRGKRDKLLEAFELDPTKKGRSYSKGNR
                     QKVALVAALASDVPLLLLDEPTSGLDPLMEKVFEEQVSQARSEARTVLLSSHILSEVE
                     ATADRVSILRAGRVVDTGTLTDLRHLTRTSVVATLATPLAVTEAERWPGVDAARLDRD
                     RLVMSVETSAVGDVVQRLGAYGIHALTCQPPTLEELFLSQYRDDLSDESPTSHTSREG
                     VSR"
     gene            837..>2046
                     /locus_tag="VGN19_11800"
     CDS             837..>2046
                     /locus_tag="VGN19_11800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide antibiotic transporter"
                     /protein_id="HEV7196615.1"
                     /translation="MSSFAGTGPLLRLAWRRDRWIILSCVLVLAATAYGSMAATIGLY
                     ANPADAAAGAKVIADNPSLTALYGPLPSLTAQGIGVLKTVMMGSLFTAFLAFAIVRRH
                     TRTEEENGRFELVAGGVVGRRAPLAAAVLLAVATVVATGALSALSLLPTGADVTGSLA
                     LGTVEVVAGLVMTGITAVAVQLTSTTRGAGGIAIAALGLSFVLRAMGDSASGRSQDLR
                     YASFLGWAEQVSPFGANRLWWLIPALALTVSLLAVADALLHRRDLGSGLWAARPGPER
                     ATAWLSSPLGLVWRLQRGSLLGWTIGYAVLGLVVGSIARSVNQIAASPSVADMLRKMS
                     GGQGSLVDVFFGAELRFLAIGAAAYGIATALRLRSEESSGRADVVLATQVSRLRWLTS
                     HASLAGLGALW"
BASE COUNT          262 a          737 c          714 g          333 t
ORIGIN      
        1 ttcctcggcc cgaacggcgc gggcaagtcc acgaccctgc gcatcctgct cggcctgctg
       61 cgatcggacg gcggcagcgt caccctcctg gggcgggacc cttggcgaga cgcgaccgag
      121 ctgcatcgcc agctggccta cgttcccggc gatgtcgtcc tgtggcccaa cctcaccggg
      181 ggcgaggtca tcgacctgct cggacgcctg cggggcgggg tcgaccgggg caagcgcgac
      241 aagctgctcg aggcgttcga gctcgacccg accaagaagg ggcgttcgta ctccaagggc
      301 aaccggcaga aggtcgccct cgtggccgcg ctcgcctccg acgtcccgct cctcctgctc
      361 gacgagccga cgtcggggct ggaccccctc atggagaagg tgttcgagga acaggtgtcc
      421 caagcccgct ccgaggcccg caccgtcctg ctctccagcc acatcctgtc cgaggtggag
      481 gccaccgccg accgggtcag catcctgcgg gccggccgag tcgtcgacac cggcacgctc
      541 accgacctgc gccacctgac ccggaccagc gtcgtcgcca ccctggccac cccattggct
      601 gtgacggagg ccgagcgctg gccaggggtc gacgcggcgc gcctcgaccg cgaccggctg
      661 gtgatgtcgg tcgagaccag cgctgtgggc gacgtggtcc aacgactcgg ggcctacggc
      721 atccacgccc tgacctgcca gccgcccacg ctcgaggagc tgttcctgtc gcagtaccgc
      781 gacgacctct cggacgagtc gcccacgtcc cacacatctc gggagggggt gtcgaggtga
      841 gctcgttcgc cggtactggc ccgctgctgc ggctcgcctg gcgacgggac cgctggatca
      901 tcctgtcctg cgtgctcgtg ctggccgcca cggcttacgg gtcgatggcc gccaccatcg
      961 gcctctacgc caaccccgcc gacgccgccg cgggggccaa ggtcatcgcg gacaatccct
     1021 cgctcaccgc tctctacggc cccctcccct cgctgaccgc tcagggcatc ggcgtcctca
     1081 agacggtcat gatgggcagt ctgttcaccg ccttcctggc gttcgccatc gtgcgacggc
     1141 atacccgcac cgaggaggag aacgggcggt tcgagctggt cgccggcggg gtggtcggac
     1201 ggcgcgcgcc ccttgccgcc gcagtgcttc ttgccgtcgc aacagtcgtc gccaccggtg
     1261 ccctgtcggc gctgagcctg ctgcccaccg gagctgacgt caccggctca ctggccctgg
     1321 gcacggtcga ggtggtggcc ggactcgtga tgactggcat cactgcagta gcggtccagc
     1381 tcacctcgac gacccggggc gccggcggga tcgccatcgc ggcactgggt ctgtcgttcg
     1441 tccttcgcgc catgggcgac agcgcctccg ggcgcagcca ggacctgcgc tatgcctcct
     1501 tcctcggctg ggccgagcag gtgagcccgt tcggggcgaa ccgcctgtgg tggctgatcc
     1561 cggcgttggc actgacggtt tcgctgctcg ccgttgccga tgcgttgctg cacaggcgcg
     1621 acctcggctc ggggctgtgg gcggcgcggc ccgggcccga gcgggcgacc gcctggttga
     1681 gcagcccgct cgggttggtc tggcgcttgc agcgtgggtc cctgctgggt tggaccatcg
     1741 ggtatgccgt gttgggactt gtggtcggca gcatcgccag gtccgtgaac cagatcgccg
     1801 caagtcctag cgtggccgac atgttgcgga agatgagcgg tggccagggt tccctcgtcg
     1861 acgtgttctt cggggccgag ctgcgcttcc tcgcgatcgg ggccgcggca tacggcatcg
     1921 ccaccgcgtt gcggttgcgg tccgaggaga gctcggggcg agcggacgtc gtgctggcca
     1981 cccaggtgag caggctgcgg tggctcacca gccacgcgag cctcgccggg ctcggagcac
     2041 tctggc
//
LOCUS       DASYFY010000577         2505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_568051, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000577 DASYFY010000000
VERSION     DASYFY010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568051"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..992)
                     /locus_tag="VGN19_11805"
     CDS             complement(165..992)
                     /locus_tag="VGN19_11805"
                     /inference="COORDINATES: protein motif:HMM:NF024701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196616.1"
                     /translation="MTTAPTRRERQRQATYDEIVEVSRRLLRDGDDVSIRAVATAMGL
                     TPPALYRYVDSHAELLALVAQSVFEDVVASMGVARDAQAPDDPAAQIVAAATAFRHWA
                     MTHRQEFQLVFASATPADAGAGVVAVVGAPTGSTPEGSTNTWAALHGCAPVQSGADLF
                     AAFFGEIFGRLWERYRFPVPADSDLDPEVLAVLRSQITPSTVTDGLGAATPGMIWMFE
                     RAWAKLYGTVTLEVFGHVHPVFISSGALFRAAMLDIGRELTIDTEWDRLQDVARGLL"
     gene            1139..>2505
                     /locus_tag="VGN19_11810"
     CDS             1139..>2505
                     /locus_tag="VGN19_11810"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEV7196617.1"
                     /translation="MHAWGTFVARRSWTVLLAGIAVVLAAAAYGIGVFGHLSNGGFDD
                     PATSSAKEQALAQRAFPGHDVDLVVIYSSATARVDDPAFRQSVQRTLAALPTKDVAKA
                     LTYYDTHSPNLVSQDRRATRVVLTLTGHTQDAKSTNWTDVKDHLQAPGLTANVGGQWA
                     VFGDVNSQVSKDIARAESLSLPIVFILSLVIFGSLLSALMPTLVGAFAVLGAFAVVRL
                     ITGITQVSIFSINVITLLGMGLAIDYALFVVSRFREELAQQPDESRASVRAALARTMG
                     SAGRTVLFSGLIVTASLSSLLLFPQNFLRSMGYGGMAAVFVAMAAALTVLPALLAVLG
                     PRIEFGRMPWRRGSGARQADGRVPDELHGTDHEVVHGAWARVAHSVMRRPVVYLVAIT
                     VALLAVASPFAGARWGSVDERVLPASAPSRVAADLQAQLFGGETASASIVLTGADPAA
                     VRSYVG"
BASE COUNT          386 a          866 c          831 g          422 t
ORIGIN      
        1 gagtggcacc agtgtgcgat cgacgcgtgc aggcgccaca aggtccgact tctaggcttc
       61 tacctggcca cgccacaggg agtcgaggcc atgcccgagc ccctcacgcc aaccccccag
      121 cgcggctggc ccacccctgg cagcgcccct gaggttggca gcccttagag cagaccccgg
      181 gccacgtcct gcagtcggtc ccattccgtg tcgatggtca gctcgcggcc gatatccagc
      241 atggccgccc gaaacagcgc accggagctg atgaagaccg gatgcacgtg accgaacacc
      301 tccagggtga ccgtgccgta gagcttggcc caggcacgct cgaacatcca gatcatgccc
      361 ggggtcgccg ccccgagccc gtcggtcacg gtggaggggg tgatctggct ccgcaggacc
      421 gcgaggacct cggggtcaag atcggagtca gccggcaccg gaaagcggta ccgctcccac
      481 agccggccga agatctcgcc gaagaaggct gcgaacaggt cggccccgct ctgaacgggt
      541 gcgcatccat ggagtgcggc ccaggtgttc gtggagccct cgggtgtcga ccccgtcggc
      601 gccccaacca cggccacaac ccccgcccct gcgtccgcag gcgtcgctga cgcaaagacg
      661 agctggaact cctgacggtg cgtcatggcc cagtgcctga aggctgttgc agccgccacg
      721 atctgggcgg ccgggtcgtc cggcgcctgt gcgtcgcgcg ccacccccat cgacgccaca
      781 acgtcctcga acaccgactg agcgaccagc gcgagcagct cggcatgact gtcgacgtaa
      841 cggtagagcg ccgggggagt caggcccatg gccgtggcga cagcacggat cgagacatcg
      901 tcgccgtcgc ggagcagccg acgggacact tcgacgatct cgtcgtaggt cgcctgtcgc
      961 tgtcgttccc gcctcgtggg ggccgtcgtc atccggtgct cctcctctct gagatggtcg
     1021 tctggagagt taaccatgaa cccttgacaa catagtttac atccatcact gttattggcg
     1081 taaacattcg tgatctggct tagccgctct ggccggcccg gtggaggaag tggtggcgat
     1141 gcacgcatgg ggcaccttcg tggcacgtcg gtcatggacc gtactgctcg cggggatcgc
     1201 ggtggttctg gcagccgcgg catacgggat cggcgtgttc gggcacctgt ccaacggagg
     1261 tttcgatgac ccagccacct cgtcggccaa ggagcaggcc ctggcgcagc gcgccttccc
     1321 tggtcatgac gtggacctcg tcgtcatcta ctccagcgcc acggcgcggg tcgacgaccc
     1381 tgccttcagg cagtcggtcc aacggactct tgccgcgctt cccaccaagg atgtcgccaa
     1441 ggccctgacg tactacgaca cgcactcgcc gaacctggtc agccaggatc gacgcgctac
     1501 ccgcgtggtc ctcacgctca ccgggcacac gcaggacgcc aagagcacca actggaccga
     1561 cgtcaaggac cacctccagg ccccaggact gacagcgaac gtgggcggtc agtgggccgt
     1621 cttcggcgat gtgaacagcc aggtgtccaa ggacatcgcg cgcgcggagt ccctgtcgct
     1681 gccgatcgtc ttcatcctca gcctggtcat cttcggcagc ctgctgtcgg cgctgatgcc
     1741 caccttggtc ggtgcgttcg ccgtgctggg cgctttcgcg gtggtgcgtc tcatcaccgg
     1801 catcacacag gtgtccatct tctcgatcaa cgtgatcacc ttgctgggca tgggtctggc
     1861 gatcgactac gccctcttcg tcgtgagccg gttccgggag gagctggctc agcagcctga
     1921 cgagtcgcgc gccagcgtgc gcgcggcact ggctcgcacc atgggcagcg ccggtcgaac
     1981 cgtgctcttc tccgggctca tcgtcaccgc gtcgctgtcc tcgctcctgc tcttcccgca
     2041 gaacttcctc cgctccatgg gatacggcgg gatggcggcg gtgttcgtcg ccatggccgc
     2101 agcgttgacg gtcctgccgg cgttgctcgc cgtcctgggc cctcgcatcg agttcggacg
     2161 tatgccgtgg cggcggggtt cgggcgcacg gcaggccgac gggcgcgtgc ccgacgagct
     2221 gcacggtacg gaccacgagg tggtccatgg cgcgtgggcg cgagtggcgc acagcgtgat
     2281 gcgccggccg gtggtctacc tggtcgcgat caccgtggcg ctgctcgcgg tggcgagccc
     2341 cttcgccggt gccagatggg gcagcgtgga cgagcgggtg cttcccgcga gtgccccgag
     2401 ccgggtagcg gccgacctgc aggcacagct cttcggaggg gagacggcat cagcctcgat
     2461 cgtcctcacg ggcgctgacc ccgcggccgt gcggtcctac gtcgg
//
LOCUS       DASYFY010000578         3239 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1776830, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000578 DASYFY010000000
VERSION     DASYFY010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3239
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1776830"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..204)
                     /locus_tag="VGN19_11815"
     CDS             complement(<1..204)
                     /locus_tag="VGN19_11815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196618.1"
                     /translation="MSINPGWPVATALVLLLALALGAHRVSRYGLEGAVLVAGLRAIV
                     QLGIAAVLIAVVVRSLPWSIVLVV"
     gene            353..1411
                     /locus_tag="VGN19_11820"
     CDS             353..1411
                     /locus_tag="VGN19_11820"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEV7196619.1"
                     /translation="MGNVTLKSVAEAAGVSISTVSNAYNKPDQMSAEVRQRVLEAAKT
                     LGYAGPNAAARSLRSQRAGAIGLLFTERLSYAFSDPYSVGMLAGLSEVAEAHRTGLLL
                     IPLPPADAGRFEDVELAADTMRQAVVDGVVAYCVDADHPARQVALDRGLPMATTVDLD
                     DERQSYVLIDEDGAAKALGRHLRGLGHHHVGIVVNSRQATGPATLVGPADEADLYNDS
                     RLRLQGLREALGPDARVVAVSAGHNSHEAGLAAAAFLLDRRDRPTAIACTSDVLALGV
                     LEGVNQRGLQVGRDVSLSGFDDIPEAQGAGLTTVRQPIAEKGRLLGRMLLDPTFTQRR
                     VVLGTELVVRASTGPAAG"
     gene            1458..1667
                     /locus_tag="VGN19_11825"
     CDS             1458..1667
                     /locus_tag="VGN19_11825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196620.1"
                     /translation="MNDFIALSIIRTISGATDAQSALPNAPVVDDGFTPRPARQVMRH
                     SLAATLRSAAAVEHRWANRLDPAAY"
     gene            1946..2305
                     /gene="rplS"
                     /locus_tag="VGN19_11830"
     CDS             1946..2305
                     /gene="rplS"
                     /locus_tag="VGN19_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEV7196621.1"
                     /translation="MQRFDEIDKASLRDDIPDFRAGDTVNVHVKVVEGTRSRVQVFKG
                     VVIRRHGGGVGATFTVRKVSFGVGVERTFPLHTPIIDKIEVLTRGDVRRAKLYYLRDL
                     RGKAAKIKEKRETTPAR"
     gene            2377..3174
                     /gene="lepB"
                     /locus_tag="VGN19_11835"
     CDS             2377..3174
                     /gene="lepB"
                     /locus_tag="VGN19_11835"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEV7196622.1"
                     /translation="MNPGAASPEQEPAAASAETDAAAVSVPADDAVTTGSKAEGSARP
                     ARRRAPSWFVLLGVALVVMLLVRGFLVQSFYVPSGSMEPTIEPGDRILVNKLATGDAL
                     LRGDVVVFNGTATFAAADRTPKQSAGLLGRVLGDAASFLGVDLGEQDFVKRIIGLPGD
                     HVVCCDKKGQIMVNGTSIVEPYLMPGDKPSELTFDIVVPQGHLWVMGDHRSDSADSRS
                     HLGDPGGGTVRISDVVGRASLRYWPLTRLGGFPGQSALADIPKAAAR"
BASE COUNT          518 a         1163 c         1073 g          485 t
ORIGIN      
        1 gaccaccagc acgatcgacc agggcaggct acggacgacg acagcgatga ggaccgcggc
       61 gatgcccagc tgcacgatgg cgcgaagccc ggcgacgagc accgcgccct ccaagccgta
      121 tcggctgact cggtgggcgc cgagcgccaa agccaacagg agcacgagcg cggtcgcgac
      181 gggccagccc gggttgatgc tcacccggcc aacgctagtg ggcgggcctc gtgcggggcg
      241 ctgtggcgca ggtcacgcgg gtgtcaccga ggcggggttg acctcgccga ggagtttctg
      301 tatcgtttta cttaatcaat ttagtagatc gatgcagaac agaggacggg tgatgggaaa
      361 cgtgaccttg aagtccgtcg ccgaggccgc cggcgtctcg atctccacgg tctccaacgc
      421 ctacaacaag cccgaccaga tgtccgccga agtgcgacag cgagtgctcg aggcggccaa
      481 gaccttgggg tatgccgggc cgaacgccgc agcgcgcagc ctgcgctccc agcgggcggg
      541 cgccatcgga ctgctgttca ccgagcggct cagctacgca ttctcggacc cgtactccgt
      601 aggcatgctc gccgggctct ccgaggtggc cgaggcgcac cgcacaggcc tgctgctcat
      661 cccgctgccg cccgcagacg cggggcgctt cgaggacgtc gagctcgccg cggacacgat
      721 gcgccaggcc gtcgtcgacg gggtcgtggc gtactgcgtg gacgccgacc atcccgcccg
      781 tcaggtcgcc ctcgaccgcg ggttgccgat ggcgacgacc gtcgacctcg acgacgagcg
      841 gcagagctac gtactcatcg acgaggacgg cgccgcgaag gcgctcggcc gacacttgcg
      901 aggcctgggc catcaccacg tcggcatcgt cgtcaacagc aggcaggcca ccggcccggc
      961 caccctcgtg gggcccgccg acgaggcgga cctctacaac gactcccggc tcaggctcca
     1021 ggggctccgc gaggcgttgg gcccggatgc gcgggtggtt gcagtgtccg ccggtcacaa
     1081 ctcccacgag gcgggtctgg cagcagcggc gttcctgctc gatcgccgcg atcggcccac
     1141 ggccatcgcg tgcaccagtg acgtgctggc cctcggagtg ctcgagggcg tcaaccagcg
     1201 cggccttcag gtcgggcgtg acgtgtcgct cagcgggttc gacgacattc ccgaggcgca
     1261 gggcgcggga ctcaccaccg tgcgccaacc catcgccgag aaggggcgcc tgctgggccg
     1321 gatgctcctc gaccccacct tcacccagcg ccgcgtcgtt ctcggcacgg agctggtcgt
     1381 ccgggccagt accggaccgg cggccggctg acccgaccgc ttcaccctca cccccaccac
     1441 acctgaaagg agaggacatg aacgacttca tcgccctcag catcatccgc accatctcag
     1501 gggcgaccga cgcccagtcg gctctgccga acgcgcccgt cgtggacgac ggcttcaccc
     1561 cccgtcccgc ccgccaggtg atgcgccact cgctcgccgc gaccctgcgc agcgccgcag
     1621 cggtcgagca ccggtgggcc aaccggctcg acccggccgc ctactgaccg gcatggctcg
     1681 tgggactgga ccgtccgggt gctcacccgg acggtccggt cgcgccggtc cctcgacgat
     1741 ttcggccgga ggccttggcc gtggcagaat gacccttcgc gcctgcgtga ccagcgcccc
     1801 tgccacaggg ggagtgaccg gagcagtttc cgggcacgcg gccagtcacc tccacggcgc
     1861 agcagctcga cccgtttgac caaccagaca cgtttgacca accaccctgg gcgacctgtg
     1921 gcgccgagaa gaaagcgaac ccgccatgca gcgtttcgac gagatcgaca aggcttccct
     1981 gcgcgacgac atcccggact tccgcgccgg tgacaccgtc aacgtccacg tcaaggtcgt
     2041 cgagggcacc cgctcgcgcg tccaggtctt caagggcgtc gtcatccgtc gccacggggg
     2101 tggcgttggc gctaccttca ccgtccgcaa ggtctcgttc ggagtcggcg tggagcgcac
     2161 cttcccgctg cacacgccga tcatcgacaa gatcgaggta ttgacccgcg gtgacgtgcg
     2221 tcgcgccaag ctgtactacc tgcgcgacct gcgcggcaag gccgccaaga tcaaggagaa
     2281 gcgcgagacc acgccggccc gctgaggccg cctcatctcc cttcccccgt gtcccgacca
     2341 gcgtcggaag acacccgaga gttaggctcc ggatcgatga accccggagc ggcctcaccc
     2401 gagcaggaac cggccgccgc gtcagcagag actgacgcgg cggcggtgtc cgttccagcc
     2461 gacgatgcgg tgacgactgg gtccaaggcg gagggctctg cgcggcccgc tcggcgacgc
     2521 gctccgtcgt ggttcgttct tctcggcgtc gccctggtcg tgatgctcct ggtacgagga
     2581 ttcctcgtcc agtccttcta cgttccgtcg ggttcgatgg aaccgacgat agagccggga
     2641 gaccgcatcc tggtcaacaa gctggccacc ggtgacgcgc tcctgcgcgg cgacgtggtg
     2701 gtcttcaatg gcacggccac cttcgcagcg gccgaccgga ctccgaagca gtcggccggg
     2761 ctgctcgggc gcgtcctcgg ggacgcggcc tcgttcctgg gcgttgacct cggtgaacag
     2821 gatttcgtga agcggatcat cggccttccc ggcgaccatg tcgtctgctg cgacaagaag
     2881 gggcagatca tggtcaatgg cacctcgatc gtggagccgt acctcatgcc gggcgacaag
     2941 cccagcgagc tcactttcga catcgtcgtg ccccagggcc acctctgggt catgggcgac
     3001 caccgtagtg acagtgcgga ctcccgctct cacctcggcg atcccggcgg cggtaccgtg
     3061 cgaatcagcg atgtggtggg gcgagcctcg ttgcggtact ggccgctgac ccgcctgggc
     3121 gggttccctg gccagtccgc gctggcagac atcccgaagg cggcagccag atgaccgaca
     3181 tcgaccccgg tgctgtcgac cccagctccg ccgccctcga ctccggtctg ggtgccctc
//
LOCUS       DASYFY010000579         1500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1251546, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000579 DASYFY010000000
VERSION     DASYFY010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1251546"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..750
                     /locus_tag="VGN19_11840"
     CDS             <1..750
                     /locus_tag="VGN19_11840"
                     /inference="COORDINATES: protein motif:HMM:NF024216.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HEV7196623.1"
                     /translation="PIIEHPDVRRMLLAAKSYAEGGLALGLYCARLVDEEQTAESQAD
                     RERAHLLLEMLTPIAKAWPSQWGPVADDLAIQVHGGYGYTRDYPVEQFYRDNRLNPIH
                     EGTNGIQALDLLGRKALLQGGAGLRLLAETIGTTTARAAGTPWSAFAADLDAQVARLL
                     EVTGTLWAAGDAELALANAHAYLEAAGHLVVGWLWLEQALAARGSDSFYEGKRAAATY
                     FWRWELPKVTTWLDLLASQDRTVLDSDPAWF"
     gene            complement(904..1059)
                     /locus_tag="VGN19_11845"
     CDS             complement(904..1059)
                     /locus_tag="VGN19_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196624.1"
                     /translation="MTMWPTVLGFLVLMALVVAMGTQSTRRYEQEQRAEGTTGSRAAD
                     AMSPLSA"
     gene            1307..>1500
                     /locus_tag="VGN19_11850"
     CDS             1307..>1500
                     /locus_tag="VGN19_11850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196625.1"
                     /translation="MASPTGSSHRTEDARASSGDPAPDDDKISGIRADRAPVGTDPEP
                     TTGGTLKRTLSEFSEDDLTD"
BASE COUNT          243 a          546 c          514 g          197 t
ORIGIN      
        1 ccgatcatcg agcaccccga cgtgcgccgg atgctgctgg ccgccaagtc ctacgcggag
       61 ggcgggctcg cgctcgggct gtactgcgcc cgactggtcg acgaggagca gaccgccgag
      121 agccaggccg accgcgagcg cgcgcacctg ctgctcgaga tgctgacccc gatcgcgaag
      181 gcgtggccct cgcagtgggg cccggtggcc gacgacctgg ccatccaggt gcacggcggc
      241 tacggctaca cccgcgacta cccggtcgag cagttctacc gcgacaaccg gctcaacccg
      301 atccacgagg gcaccaacgg catccaggcg ctcgacctgc tcggccgcaa ggccctgctc
      361 cagggcggcg cggggctgcg actgctggcc gagaccatcg ggacgacgac ggcgcgggcg
      421 gccggcaccc cgtggtcggc tttcgccgcc gacctcgacg cccaggtggc ccgactgctg
      481 gaggtgacgg ggaccctctg ggcggccggc gatgccgagc tcgcgctggc caacgcgcac
      541 gcctacctcg aggccgcggg gcacctggtg gtcggctggc tgtggctgga acaggcgctg
      601 gcggcccgcg gttcggactc gttctacgag gggaagcgcg cggcggcgac gtacttctgg
      661 cggtgggagc tacccaaggt cacgacctgg ctcgacctgc tcgcttccca ggaccgcacc
      721 gtgctcgaca gcgaccccgc ctggttctga ccgccgtctg cctggcggag cccgacattg
      781 agcgcggatg cgtcgatctc gagccgaaat gacgcatccg cgctcaccgt cggaccctgc
      841 gacatggaaa cgccccgtgc ctccggatcg gaggaacggg gcgttcgggg ctgaggcgaa
      901 gggctacgcg ctgagcgggc tcatcgcatc ggccgcgcgg gaaccggtcg tgccctcggc
      961 gcgctgctcc tgctcgtaac gccgcgtgga ctgcgtgccc atcgcgacga ccagggccat
     1021 caggaccagg aagcccagaa cggtcggcca catcgtcatc gaaatttccc ccatgctgtt
     1081 cggaagtcgc ctgccgggtc aggggcgggc gacacgttcg tcagggtcct tctgcccagg
     1141 ggaacgcgaa ctcaatcatc gaatcgcgca catcacctga cagcgtgtga ccgccctcac
     1201 tcagggctgg ccaccgccac gtggagaccg ggcgcctcga tacatcgccc cgaagacgcg
     1261 cggagggcag cgattggaac aacatcgtcc ggggaatcgg cagggcatgg cttcacccac
     1321 cggctcgtcc caccgcaccg aggacgcccg cgcctcctcc ggcgatcccg cacccgacga
     1381 cgacaagatc agcggcatcc gcgctgaccg cgcgcccgtc gggaccgacc cggaaccgac
     1441 gaccggtggc actctcaagc gcacgctgag cgagttcagc gaggacgacc tgaccgactg
//
LOCUS       DASYFY010000580         2643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_200071, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000580 DASYFY010000000
VERSION     DASYFY010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200071"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VGN19_11855"
     CDS             <1..191
                     /locus_tag="VGN19_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011748649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEV7196626.1"
                     /translation="MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRENHKMMLDHY
                     QQTKNLLVSYSPDALGFF"
     gene            198..587
                     /locus_tag="VGN19_11860"
     CDS             198..587
                     /locus_tag="VGN19_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018187777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF779 domain-containing protein"
                     /protein_id="HEV7196627.1"
                     /translation="MDTTQHSRVDFTREAADLLRRLTVKHGPLMFHQSGGCCDGSSPM
                     CYPAGEFITGDADVLLAQLAVGGLLDPVEFWMSVSQYEYWKHTHLTVDVVPGRGSGFS
                     VEAPEGVRFLIRSRLMSEDELRMFGLI"
     gene            complement(677..1948)
                     /locus_tag="VGN19_11865"
     CDS             complement(677..1948)
                     /locus_tag="VGN19_11865"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196628.1"
                     /translation="MTGPGEPSRRGDVRLLLTARVAAASATALTLFALTIHAHDSGGG
                     TGRVAAIMVAFALPSVIGMGAAGHLADQHDSRTVLVLSGCAQVCAVGALTLGGAPWVI
                     YALVVVAQLAQTIGNPTWSALLPMITGDNDYGRVVATQQGAVALAGIVAAGVGGLVAA
                     TWGTGAVLWAATASCAVLTACGAMVKARRGGSSPSPGSVWSGLGRSMFSPAGVRLLRD
                     DAVVWPLLTSLLAALLLLESVNVAEVFLIRDTLHGSASAFGVVQALSGAGAVGGAWAA
                     GRVRTQRARLRTVGAAMAASGACMAGAGAAPNTAIAGIAFALIGFAIALANGTFFPAL
                     MLRTHDSRRGAVNAAAMGLGRAATMAGLAVGAGVGALVGPRTMFLVAGALIAATCCLV
                     VVRVWRATRQLRDNPTLPEPDPASQRPPADL"
     gene            complement(2135..>2643)
                     /locus_tag="VGN19_11870"
     CDS             complement(2135..>2643)
                     /locus_tag="VGN19_11870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196629.1"
                     /translation="PTVSSLPEGARTVVLAGDLTEAWKDPVIWCEGGQWQMWVCRHPL
                     DGGAGEADRMSSHHAVSEDGLRWTFTGKALVPTPGQWDARGSRVTAAYRGALFYDGRS
                     SAAENFHERTGLAGGDPAAAIAGPTAAGRSVRYLDLVATSRGVRLFWESSRPDGSHDL
                     RTTELSGL"
BASE COUNT          456 a          934 c          862 g          391 t
ORIGIN      
        1 gcatgggccg tggcatccaa gctggccgcg tatggacgaa ctgctatcac gcctatccgg
       61 cgcacgctgc gttcggtggc tacaagcagt ccggcatcgg tcgcgagaac cacaagatga
      121 tgcttgatca ctaccagcag acgaagaacc tgctcgtttc ctactctccc gacgcgctcg
      181 ggttcttcta ggccgacgtg gatacgaccc aacacagccg ggtcgacttc acccgtgagg
      241 cggcggacct gctccgccgc ctcaccgtga agcacgggcc gctgatgttc caccagtcgg
      301 gagggtgctg tgacggaagt tccccgatgt gttacccagc gggcgagttc atcacgggcg
      361 acgccgacgt cctgctagcc cagctggctg tcggtggcct cctggatccc gtcgagttct
      421 ggatgtccgt gtcgcagtac gagtattgga agcacaccca tctcactgtc gacgtcgtcc
      481 cgggccgggg aagtggcttc tcggtcgagg cgccagaagg ggtgcgcttc ctcatccgct
      541 cgcgcctgat gtcagaggac gagctccgca tgtttggtct gatctagggg tccctgtcga
      601 ctggccagaa accgaggctc gcggcatacc ggaggctcga tttcaggccc ctcgacggcc
      661 ccacaggggt cgggcatcac aggtcggccg gcggtcgttg cgaggcaggg tcgggctcag
      721 ggagggtggg gttgtcgcgg agctgtcgtg ttgccctcca cacgcggacg acaacgaggc
      781 agcacgtcgc ggcgatcagc gcccccgcga cgagaaacat ggtccgcggc ccaacgagcg
      841 caccaacccc ggcgcccacc gccaggccgg ccatggtcgc tgcgcgccct agccccatgg
      901 cggctgcgtt cacggcgccg cggcgcgagt catgggtacg cagcatgagg gccggaaaga
      961 acgtgccgtt agcgagggcg atcgcaaaac cgatgagggc gaaggcgatt ccggcaatcg
     1021 cggtgttcgg cgcggctcca gcgccggcca tgcaggcccc ggaggcggcc atggcggcac
     1081 ccacggtgcg cagcctggcc cgctgggtgc gaacccgacc tgccgcccag gcgccaccca
     1141 cggcccctgc accgctgagc gcttgcacga cgccaaacgc gcttgcagag ccatgcaaag
     1201 tgtcgcggat gaggaagacc tcggccacgt tgacggactc cagcaacagc agcgccgcca
     1261 agagtgaggt cagcaggggc cagacgacgg cgtcgtcgcg cagcaaacgc acgccggccg
     1321 gggagaacat gctccgacca agacccgacc acaccgagcc aggcgagggc gaggacccac
     1381 cacgacgtgc cttgaccatg gcaccacagg cggtcagcac tgcacagctg gccgtggcag
     1441 cccacagcac cgccccggtc ccccacgtgg ctgcaaccag gccgccgact cccgcagcga
     1501 cgatgccggc caatgccaca gcgccctgct gggtggcgac gacacgcccg tagtcgttgt
     1561 cgccggtgat catcggcagc aatgccgacc aggtcgggtt gccgatggtc tgtgcgagct
     1621 gggcgaccac gaccagcgca tagatcaccc atggcgcccc gccgagagtc agggcgccca
     1681 cagcgcagac ctgcgcgcac ccgctcagga cgagcacggt ccgtgagtcg tgctggtcgg
     1741 cgaggtgccc cgcggcgccc atgccgatga cgctgggcag tgcgaacgcg accatgatgg
     1801 ccgccactcg gccggtgccg ccaccactgt catgcgcgtg gatggtcagt gcgaacaagg
     1861 tcagggccgt cgccgaagcc gctgccaccc gagcggtgag caggagtctg acatccccac
     1921 gacgactcgg ctcgccgggt cctgtcatcc gtcgtgctcc ccgtgtcaat cgtgcggggc
     1981 atgcccggct cgagtcagtg tcggcgagcc tgaaacccag catcaccatc ggtcttatcc
     2041 accgaccccc gccggttctc ggtgcagtat ggaccgttca cggctgatat tgctgcattt
     2101 caccgaaatt aatgaagtat cttgcgcttg cggcctatag ccccgacagc tcggtcgtgc
     2161 gcagatcatg cgagccatca gggcgcgagg actcccagaa cagccgcacc ccacgactgg
     2221 tcgcgaccag gtcgagatac cgcacagacc gcccggcggc agtcggtccc gcgatcgcag
     2281 cggctggatc accgcccgcg agccccgttc gttcgtgaaa gttctccgcc gcgctcgacc
     2341 ggccgtcata gaagagcgcg ccccggtatg ccgcggtgac gcggcttccg cgggcgtccc
     2401 actgtcccgg ggtgggcacc aaggccttgc ccgtgaaggt ccagcgcagc ccgtcctcgc
     2461 tcaccgcgtg gtggctgctc attcgatcgg cctcgcccgc accgccgtcg agggggtgac
     2521 ggcataccca catctgccac tgcccaccct cacaccagat gaccgggtcc ttccacgcct
     2581 ccgtgagatc cccggcgagc accacggtgc gcgcaccctc cggcagagaa ctcacggtcg
     2641 ggg
//
LOCUS       DASYFY010000581         5022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1095148, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000581 DASYFY010000000
VERSION     DASYFY010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095148"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VGN19_11875"
     CDS             <1..413
                     /locus_tag="VGN19_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018190859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEV7196630.1"
                     /translation="IGAVLVPGAKAPTLVTNEQVSRMRPGSVLVDISIDQGGCFEDSR
                     PTTHADPTYQVHGSVFYCVANMPGAVPHTSTYALTNVTLPYAVELASKGWREALRTNK
                     PLGLGLNTHAGSVTYAPVAQAHGLPAVALETMLA"
     gene            462..1991
                     /locus_tag="VGN19_11880"
     CDS             462..1991
                     /locus_tag="VGN19_11880"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020018172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0071897 - DNA biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEV7196631.1"
                     /translation="MLFIDVVAASVATAATRSRLAKTAAVADALRAAGSQDAALVAAF
                     LAGTLPQRRVGVSWRGLTDLPTPAEAPQATVRQVDEALTALAALGGSGSSASRQAAVA
                     GLFGLLTEAEQEFLRGLITGQLRQGAQDGVMLGAIAAAADVPEAAVRRAVMLAGYAGP
                     VAEAALSGGVDALDRIALEVGRPMRPMLAASAPDVASALESAGAQGEVFVDGKLDGIR
                     LQAHRDGDTVRLFTRSLDDITDRLPEVVEAVLTLPAQRLVLDGEAIALDDAGRPRPFQ
                     ETASRTMSSVGVPELRSRVPVSPYFFDVLHVDGQDLLDVPAVERFGRLAELVPTGWLV
                     PRQVAASAAEAQAFFDQLVRDGHEGIVVKAANAPYAAGRRGAGWVKVKPRHTLDLVVL
                     AVEWGSGRRRGWLSNIHLGARDPQTGGFVMLGKTFKGMTDAMLSWQTERFRELQLSDD
                     GWVVSLRPEQVVEVAFDGIQTSSRYPGGVALRFARVLRYRDDKTAEEADTVETVRTLR
                     S"
     gene            2045..2500
                     /locus_tag="VGN19_11885"
     CDS             2045..2500
                     /locus_tag="VGN19_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7196632.1"
                     /translation="MSDRQTAADDLLRAAARLNRWASRHASFEVPYAQARLLALLEEL
                     GPARVSMLADADHSSQPAMTTALQRLEAQGWAQRVSDPADARASLLSLTPLGRDALER
                     VRAARVAALAPALDALPESDLQRLREAVAAMQDLLNRAAPRTLPTRKDS"
     gene            2508..3722
                     /locus_tag="VGN19_11890"
     CDS             2508..3722
                     /locus_tag="VGN19_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196633.1"
                     /translation="MWRQPKTVWSVAFACVIAFMGIGLVDPILKPIADDLGAGPSQVS
                     LLFTSYMAVMGLAMLVTGWVSSRTGAKRTLLLGLVIIIVGAGLAGAQDTIGGIVAFRA
                     VWGLGNALFIATALATIVSAASGSVGQAIILYEAALGVGIAAGPLLGGWLGAHSWRWP
                     FWGVSVLMTLAFVAIVTTLPATPPSGKRTSLSAPLRALSHRGLLTVGITALLYNFGFF
                     TLLAWTPFPLGLGAHQVGLVFFGWGILLAFTSVVVAPRLQRRIGTLPGLVCALAGFAL
                     VLAAMAVGTDHKPVLVIGVILAGAFLGINNTLITETVMKVAPVERGVASAAYSFVRFG
                     GGAIAPWLAGTLGERSANLPFWVGAGAVVLSILVLLTARGAIQTIDREPGHGAEPSGS
                     RLEAEAVTVGDS"
     gene            3788..4555
                     /locus_tag="VGN19_11895"
     CDS             3788..4555
                     /locus_tag="VGN19_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA family kinase"
                     /protein_id="HEV7196634.1"
                     /translation="MLDQITATRYVTPLREGGSLPGLIEADDLGTYVLKFRGAGQGLK
                     VLVAEVVVGELARALGLAVPLMTVVDLQAPIAKYEADEEVQDLLTASLGLNLGIDFLP
                     GSFGYDGSRPPDQQTAAAIVWLDALTANVDRTWSNPNLLVWHRKPWLIDHGAALYFHH
                     GWPSRGVDATRFAAQPYDASTHVLKDVAGDVRAAHERLSPLVDRATLRAVTSAVPDGW
                     LEDAPGLDGPNAVREAYVDHLLARVGNPQAWLPGGLA"
     gene            4552..4932
                     /locus_tag="VGN19_11900"
     CDS             4552..4932
                     /locus_tag="VGN19_11900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HEV7196635.1"
                     /translation="MSLQGYQYVVLRCVPRVEREEFVNVGVVLYSQAADFLEAAYRVD
                     EDRLRVLAPSVDLETVAASLETICQVCRGVTGGGLPTLGGLGRRFGWLSAPRSTVVQP
                     SPVHGGLTSDPAAELHALLDRLVD"
BASE COUNT          692 a         1769 c         1735 g          826 t
ORIGIN      
        1 tgatcggggc cgtcctcgtc ccgggcgcga aggcaccgac cctggtgacg aacgagcagg
       61 tgtcccggat gcggccgggc tcggtgctgg tggacatctc catcgaccag ggcggctgct
      121 tcgaggactc gcgaccgacc acccacgccg accccacgta ccaggtgcac gggtcggtct
      181 tctactgcgt cgccaacatg ccgggggcgg tgccgcacac cagcacctat gccctgacca
      241 acgtgacctt gccgtatgcc gtggagctcg ccagcaaggg ctggcgcgag gcgctacgca
      301 ccaacaagcc gctgggtctt ggtctgaaca cccacgctgg gtcggtcacc tatgcgccgg
      361 tcgcgcaggc acacggactg cccgccgtgg cgctggagac gatgctggcc tgaggccacg
      421 atctgccacc ggtgtcgggg ctcgcggcta gcctcggatc tgtgctcttc atcgatgtcg
      481 tcgcggcctc ggtggcaact gctgccaccc ggtcacggct ggccaagacg gccgcagtgg
      541 ccgacgccct gcgcgctgcc gggtcgcagg acgcagcact agtggccgcc ttcctggccg
      601 gcacgctccc ccagcgtcgg gtgggcgtga gctggcgtgg gctgacggac ctgcccaccc
      661 cggccgaggc gccgcaggcc acggtgcgcc aggtcgacga ggcactcacc gcgctggccg
      721 cgttgggtgg gagcggctcg tctgcgagcc gtcaggccgc cgtagccggg ctgttcggtc
      781 tgctcaccga ggccgagcag gagttcctgc gcggactgat caccggtcaa ctccgtcaag
      841 gtgctcagga cggggtcatg ctgggcgcca tcgccgcggc cgcggacgtt ccagaggccg
      901 cggtgcgtcg ggcggtcatg ttggccggct acgccggccc ggtcgcggaa gcggccctga
      961 gcggtggtgt cgacgccctc gaccggatcg cgctggaggt gggtcgcccg atgcggccga
     1021 tgctggccgc gtcggcgccc gacgtggctt ccgccctgga gtccgcgggc gctcagggtg
     1081 aggtgttcgt ggacggcaag ctcgacggca tacggctgca ggcgcaccgc gacggcgaca
     1141 ccgtgcggct gttcacccga tccctggacg acatcaccga ccggctgccc gaggtggtcg
     1201 aggcggtcct gaccctccct gcacagcgcc tggtcctcga cggtgaggcc atcgcgctcg
     1261 atgatgccgg gcgaccgcgc ccgttccagg agacggcttc acggacgatg agcagcgtgg
     1321 gagtccccga actgcgcagc cgcgtgccgg tgtcccccta cttcttcgat gtcctgcacg
     1381 tcgatgggca ggacctgctc gatgtcccgg cggtcgagag gttcgggcgg ctcgctgagc
     1441 tggtgccgac cgggtggctg gtgcccagac aggtcgcagc cagcgccgcg gaggcccagg
     1501 cgttcttcga ccagctcgtg cgcgacggtc acgagggcat cgtggtgaag gccgcgaacg
     1561 ctccgtatgc cgctggtcgg cgaggggcgg ggtgggtcaa ggtcaagccg cgccacacgc
     1621 tcgacctcgt cgtcctcgcc gtcgagtggg gtagcggtcg gcgccgcggc tggctgtcga
     1681 acatccatct cggcgctcga gacccccaga ccggtggctt cgtcatgctg ggcaagacgt
     1741 tcaagggaat gaccgacgcg atgttgtctt ggcagacgga gcgattccga gagcttcagc
     1801 tctctgacga cggatgggtc gtcagcctgc ggcccgagca ggtggtcgag gtggccttcg
     1861 acggcatcca gacctcgtcg cggtatccgg gtggggtggc actgcgcttc gctcgggtgc
     1921 tgcgatatcg ggacgacaag acggccgagg aggccgacac cgtcgagaca gtgcggactc
     1981 tgcgcagctg atccggttcc gttccgggtt ggatttacat aggttcccta tgtaatatga
     2041 tcgcgtgagc gacagacaga cagcggcgga cgacctcctc cgcgccgcgg ccagactcaa
     2101 ccgatgggcc tcccggcacg cctccttcga ggtgccctac gcgcaggcac ggctcctcgc
     2161 cctgctcgaa gagctcggtc cggcgcgggt cagcatgctg gcggatgccg accacagcag
     2221 ccagcctgcg atgaccacgg cgctgcaacg gctcgaagcg cagggctggg ctcagcgcgt
     2281 cagcgatccc gctgacgccc gggcctcgct gttgtcgctg acgcccctgg gtcgggacgc
     2341 cctggagcgc gtcagggcgg ccagggtcgc ggcccttgca ccggccctcg acgctctgcc
     2401 cgaaagcgac ctccaacgcc tgcgcgaggc cgtcgccgcg atgcaggacc tactcaaccg
     2461 tgcggcccct cgcacgctcc ccacccggaa ggacagctga ctccaccatg tggcgccaac
     2521 ccaagaccgt ctggtccgtc gcctttgcct gcgtcatcgc cttcatgggc atcggcctgg
     2581 tcgaccccat cctcaagccc atcgccgacg acctcggcgc cggcccgtcg caggtctccc
     2641 tgctcttcac gagctacatg gcggtgatgg gcctcgccat gctggtgacc gggtgggtgt
     2701 ccagccgcac cggcgccaaa cgcacgctgc tgctgggttt ggtcatcatc atcgtgggag
     2761 cgggcctcgc cggcgcccag gacacgatcg gcgggatcgt cgccttccgt gcggtctggg
     2821 gcctgggcaa cgcgctgttc atcgccactg ccctggccac gatcgtcagc gcagcgagtg
     2881 gatccgtcgg gcaggccatc atcttgtacg aagcggcgct cggcgtcggc attgcggccg
     2941 gacccctttt gggcggctgg ctcggcgccc actcgtggcg ctggccgttc tggggcgtca
     3001 gcgtgctgat gaccctggcc ttcgtcgcga tcgtgacgac gctgcctgcc actcccccat
     3061 cgggaaagcg cacctcccta tcggctcctc ttcgcgccct gtcgcaccgt ggcctgctca
     3121 ccgtcggcat caccgcgctg ctgtacaact tcggcttctt caccctgttg gcctggaccc
     3181 cgttcccgct gggcctcggc gcacatcagg tcgggctggt cttcttcggc tggggcatcc
     3241 tgctggcctt cacctccgtc gtcgtggcgc cacgcctgca gcgacggata ggcaccctgc
     3301 ctggtctcgt ctgcgccctg gctggtttcg cgctggtcct ggctgccatg gcggtcggca
     3361 ccgatcacaa gccggtcctg gtgatcgggg tgatcctcgc cggggcgttc ctgggcatca
     3421 acaacaccct gatcaccgag accgtcatga aagtggcgcc cgtggagcgc ggcgtcgcgt
     3481 ccgcggcata cagcttcgtg cggtttggcg gaggcgcaat cgcgccgtgg ctggccggca
     3541 ccctcggtga acgcagcgcg aacctaccat tctgggtcgg cgctggcgcc gtcgtgctgt
     3601 cgatcctggt gctgctcacg gcgcgcggcg cgatccagac gatcgatcgc gagccagggc
     3661 acggagccga gccgtccggc agccgactcg aggcggaggc agtgaccgtc ggcgactcct
     3721 gagcggccta cctccggact ggcgagcccg cgccgcgagc acgtcgcccg gccctaggct
     3781 gggcgccgtg ctcgaccaga tcacggcaac ccgctacgtc accccactac gggagggcgg
     3841 gtcgctgcct ggcctcatcg aggcggacga cctcggcacc tacgtcctga agtttcgggg
     3901 tgccgggcag ggcctgaagg ttctggtcgc cgaggtggtc gtcggtgagc tggcccgggc
     3961 gctcggcctc gccgtcccgc tgatgaccgt cgtcgacctg caagcaccca tcgccaagta
     4021 cgaggccgac gaggaggtcc aggacctact cactgcgagc ctcgggctga acctgggcat
     4081 cgacttcctt ccaggatcct ttggctatga cgggtcgcgc ccaccggacc agcagaccgc
     4141 ggccgccatc gtgtggctcg acgcccttac cgccaacgtc gaccggacct ggagcaaccc
     4201 caacctgttg gtttggcacc gcaagccctg gctcatcgac catggcgcgg cgctgtactt
     4261 ccaccatggc tggccctccc gcggagtcga cgcgacccgg ttcgccgcgc agccgtacga
     4321 cgcgagcacg catgtgctca aggatgtggc cggcgacgtg cgagccgccc acgagcgact
     4381 ctcgccgctg gtggaccggg ccaccctgag ggctgtcacg tctgcggtac cggacggctg
     4441 gctggaggac gcccctggac tcgacggccc gaacgcggtg cgtgaggcct acgtggacca
     4501 cctgctcgct cgggtgggca acccgcaggc ctggcttccc ggaggcctgg catgagtctg
     4561 caggggtacc agtacgtcgt actgcgctgc gtacctcgcg tcgaacgcga ggagttcgtc
     4621 aacgtagggg tggtgctgta cagccaggcc gccgacttcc tcgaggccgc ctaccgcgtc
     4681 gacgaggacc ggctgcgcgt cctagccccg agtgtggacc tcgagacagt ggccgcctca
     4741 ttggagacca tctgccaggt atgccgcggg gtaaccggcg gtggtttgcc caccctgggt
     4801 ggcctgggcc gtcgcttcgg ctggctgagc gcaccgcgaa gcaccgtcgt ccagcccagt
     4861 ccggtccacg gaggtctgac aagcgacccg gccgccgagc tgcacgccct gctcgaccgc
     4921 ctcgtcgact agggggccgg gtcgacaggc gcccccatgg gctcccgcat ggactagagc
     4981 cccatggagg tgatctggat cgcgacctgt tcgtcttcga cg
//
LOCUS       DASYFY010000582         1579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1146605, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000582 DASYFY010000000
VERSION     DASYFY010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146605"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..724
                     /locus_tag="VGN19_11905"
     CDS             <1..724
                     /locus_tag="VGN19_11905"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7196636.1"
                     /translation="RSAAHELAQVYFRVRSASHSPDPGSVRILNSLDEISSATAEIVA
                     TGAEIVRSFRSISPRTRAVFASPRHSHEEPTHGTGGKELETRTVYDTRVLEIDGALEV
                     LEARERGGERFRFTTSVPFSAVIVDDSAAVVDVSGFESSGLGSALVRARPMVGALVAL
                     YDKLWDLGSPLNRGPGATPSERRDRTILALLAAGAPDATIARQTGVSQRTVERRVRAL
                     MDQLGSGTRFQAGVQAARRGLI"
     gene            complement(732..>1579)
                     /locus_tag="VGN19_11910"
     CDS             complement(732..>1579)
                     /locus_tag="VGN19_11910"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196637.1"
                     /translation="RRAAGWRTISAMAGDARAAMVEQSYVSLLERARSPLMRRMPDTD
                     VLLYLSDLPIPICSGALAPHFAAGQERRRAGEALDVLFGNGQPFQWWSGPLSSSEVAE
                     EVVRERGLVTEGLTPGMHADLALVSLPNPSSTVRVQQCVGPEEWLEANRVFARAFSLP
                     LDFADPFVEILGSVDGVIQLSARLDGEVVGCAAGAMRDGVMGVYNVGTLEPARRRGVG
                     RALTAELMRIGRDRGAHSTILHASEMGYPVYLGLGFEHVTDVSQYFWLPPAGRPTGPT
                     AGPDD"
BASE COUNT          237 a          585 c          546 g          211 t
ORIGIN      
        1 gagatcggcc gctcatgagc tcgcccaggt gtacttccga gtgcgctccg cctcgcacag
       61 ccctgacccc ggctcggtgc gaatcctcaa ctccctggac gagatcagct ccgcgactgc
      121 cgagatcgtg gcgaccggcg cggagatcgt gcgcagcttc cggtcgatct ctccacggac
      181 ccgcgccgtc ttcgccagtc cccgacacag ccatgaggaa cccactcatg gcaccggcgg
      241 caaggagctc gagacgcgga ccgtctacga cacgagggtg ctcgagatcg acggcgcgct
      301 ggaggtgctc gaggcgcgcg agcgcggggg tgagaggttc cggttcacca cctcggtgcc
      361 gttctccgcc gtgatcgtcg acgacagcgc agccgtcgtc gacgtgagcg gcttcgagag
      421 cagcgggctc ggttcggccc tggtgcgggc ccggccgatg gtcggcgccc tggtggcgct
      481 ctacgacaag ctgtgggacc tcggctcccc gctcaaccgc ggtcctgggg cgaccccgtc
      541 ggagcgccgc gaccggacga tcctggcgct gctggcagca ggagcccccg acgcgaccat
      601 cgccaggcag accggggtct cgcagcgcac cgtggagcgg cgggtgaggg ccctgatgga
      661 ccagctgggg tccggcacgc gcttccaggc cggtgtccag gcagcccggc gcggcctgat
      721 ctgagcctga cctagtcgtc cgggccggcg gtcgggcctg tgggccggcc ggcgggcggg
      781 agccagaagt actggctgac gtcggtcacg tgctcgaagc ccaggccaag gtagaccggg
      841 tagcccatct cgctcgcgtg caggatcgtg ctgtgagcgc cgcggtcgcg cccgatccgc
      901 atcagctcgg cagtcagggc gcgccccacc ccgcggcgcc gcgcaggctc cagggtgccg
      961 acgttgtaga cacccatcac cccgtcccgc atggcgcccg ccgcgcaccc cacgacctca
     1021 ccgtcgagcc gtgccgacag ctggatcaca ccgtcgaccg aacccaggat ctcgacgaac
     1081 gggtcggcga agtccagcgg cagcgagaag gcccgggcga acacgcggtt cgcctcgagc
     1141 cactcctcgg gccccacaca ctgctggacc ctcacggtgc tcgacgggtt gggaagggag
     1201 accagggcca ggtccgcgtg catcccgggg gtgaggccct ccgtgacgag acctcgctcc
     1261 cgcacgacct cctccgccac ctcggacgag ctcagcggtc ccgaccacca ctggaacggc
     1321 tgcccgttgc cgaacagcac gtcgagcgcc tcacccgccc gtcgacgctc ctgccccgcg
     1381 gcgaagtgtg gcgcgagggc cccgctgcag atggggatcg gcaggtcgga gagatagagc
     1441 aggacatccg tgtccggcat acggcgcatc aggggggacc gcgcgcgctc gagcaacgag
     1501 acgtagctct gctccaccat cgccgcccgg gcgtcccctg ccatggctga gatcgtccgc
     1561 catccggccg cccgtcgcc
//
LOCUS       DASYFY010000583         6749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_884117, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000583 DASYFY010000000
VERSION     DASYFY010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6749
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_884117"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..1329)
                     /locus_tag="VGN19_11915"
     CDS             complement(34..1329)
                     /locus_tag="VGN19_11915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196638.1"
                     /translation="MTTFEQVRPIADAVLYEGYVLYPYRADDAKNRVRWQFGVLAPPA
                     FTTADASERASLESEVLLDGPLGSLQARVRFLQVQRRTVEQRVGGRMVTVSRLDAGDT
                     AYLPFDEALPREVDVHADLAGLCAASVTREFTVVGGTEVEDVAGGRLVRERLPLSGRV
                     VMGAEVLPGPYGTLRLHVEVHNTTVLGGQQVPSRQEALRSSLVAAHLMLRVDRGRFLS
                     LTDPPEWASGYAAQCHNAGVWPVLAGPPGAHDLVLCSPIILPDHPQVAPESTTEFFDG
                     TEMDEMLSLRALTLTEEEKRAVRGTDPRAAELLAQVEDLPPELLVRLHGAVRSLSQGG
                     RRVQPPPQPDPEVLEVEGVVIREGSRVLLRPGVRRADAQDLFLAGRTATVTRVLHDLD
                     GNDHVAVLLDDDPGQDVALVHGRFLYFAPDEVEPLGVSP"
     gene            complement(1326..1985)
                     /locus_tag="VGN19_11920"
     CDS             complement(1326..1985)
                     /locus_tag="VGN19_11920"
                     /inference="COORDINATES: protein motif:HMM:NF039986.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6084 family protein"
                     /protein_id="HEV7196639.1"
                     /translation="MPDPGDVAATGQLDFECLGAEAQRYAAAPTVLFRIRVTESSGAP
                     VHAVALRAQIRIEPVRRRYDDEEAAALVDLFGSRERWGETLKPLQLAFVTQMVPSFAG
                     STETALALACSYDFEVAANKYLYSLHDGVVPLLMLFSGTWFRPGPEGLSVLPIPWDKE
                     VSFGLPVAVWRQAMDQHFPGSAWLRLGRDAFDALYRYRAANAMVSWDDAVTRLLKEAE
                     Q"
     gene            complement(1978..2661)
                     /locus_tag="VGN19_11925"
     CDS             complement(1978..2661)
                     /locus_tag="VGN19_11925"
                     /inference="COORDINATES: protein motif:HMM:NF040271.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5947 family protein"
                     /protein_id="HEV7196640.1"
                     /translation="MRPPADPLLGLRRLTRPAPAPPDAGVADGGPAPEVCELCSVEID
                     SRHGHVADLQTQRLLCTCRSCFLLFTGSGAGAGRFRALPERSRRVDSVAISQGQWDAL
                     QIPVDLAFFFLQTGAESFAACYPGPGGATESLLDLGAWALVCEANPVLGQVEPDVEAV
                     LLRRTDDAFECFLVPIDRCYELVGLVRQSWVGFSGGQEVWGRIDAFFAAIRAASQLVD
                     RHGSAVAHA"
     gene            complement(2658..3536)
                     /locus_tag="VGN19_11930"
     CDS             complement(2658..3536)
                     /locus_tag="VGN19_11930"
                     /inference="COORDINATES: protein motif:HMM:NF013286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEV7196641.1"
                     /translation="MNSHELQELSSRIETLLDEFGGPSDLVAQARAESLVRAVMDLYA
                     AGLARVVELTEGSAVLRRLADDELVAGLLLLHDLHPDPVDARIQRALDRVRPYLGSHA
                     GGIDYLGVDDVGVAHLTLQGSCSGCPSSSVTVTMTIETAILEVAPEVVSVDVVGVVAA
                     PKPKPLLQIGLRPGLEPVGARGAIAGESTWESVQVPPDPGLIVHTDVGGLGLLLANLD
                     GTAYAYVDECPHCEGELVSGTLRGQLLTCPQCGARYNVRLAGRALDLGGEHLSPLPLL
                     PDGAGWKVALPGGVPA"
     gene            complement(3552..5330)
                     /locus_tag="VGN19_11935"
     CDS             complement(3552..5330)
                     /locus_tag="VGN19_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003801347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEV7196642.1"
                     /translation="MTTTKHVDSDVVEMSWDPITRIVGSLGIYATIDFKAKEVRECHS
                     TSSIFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVAPPHLGEWI
                     INLGEAAEYMFDHNIFQENLVGVDYCERMVKETNPGVLERANSTEAPHAGEHGFRTIG
                     DIMRSLNPLEGEFYREALQMSRMTREMFCLMEGRHVHPSTLYPGGVGTVATIQLFTDY
                     LTRLMKYVEFMKKVVPLHDDLFDFFYEALPGYEHVGERRVLLGCWGSLNDPAVCDFTY
                     RKMNEWGKAMFVTPGIVVDGKLVTNNLVDINLGMRILLGHSYYDDWADAGHEVFVQRD
                     PLGNPVDVRHPWNQHTLPKPAKRDFSSAYSWTMSPRWFDGTDHLALDTGGGPIARLWS
                     TALSGLVNTDYVQATGHSVVITLPRTMLKPEARFEWKIPQWSNALERNRARTYFQAYM
                     AALALHFVDKALAEVRAGRTQTWTPFEVPDEAISVGFTEAVRGVLSHHLVIREGKIAN
                     YHPYPPTPWNGSVRDSYGTPGPYEDAVQHTPIFEENPPDSFKGIDIMRAVRSFDPCLP
                     CGVHLFTGGGGVTRQVHSPGMAVRPY"
     gene            complement(5347..6414)
                     /locus_tag="VGN19_11940"
     CDS             complement(5347..6414)
                     /locus_tag="VGN19_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003801345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression protein HypE"
                     /protein_id="HEV7196643.1"
                     /translation="MTTTAESPQSTAAEVAPLHILWMNGGLSCDGDSVALTAATQPSI
                     EEIVLGALPGLPNIQVHWPLIDFECGPEQGADNFMEWWHKADRGELDPFVLVVEGSIP
                     NEKIKSAGYWAAFGNNPDTGQPMPTSEWLDRLAGKATAVVAVGTCATYGGIHAMAGNP
                     TGAMGVPDYLGWSWKSKAGLPIVCVPGCPIHPDNLSETLVYLLYQVAGQAPMIPLDEQ
                     LRPQWLFGATVHEGCDRAGYYEQGQFATEYGSPKCLVKLGCWGPVVKCNVPKRGWING
                     VGGCPNVGGICIACTMPGFPDKFMPFMDEPPGSKVSAAASTMYGTVIRRLRGVTAKTV
                     DKEPSWRTKGTALTTGYTKNW"
BASE COUNT         1057 a         2326 c         2317 g         1049 t
ORIGIN      
        1 cggccaaggg gacacctgtc atggcgacac ccgtcatggc gacaccccca ggggttcgac
       61 ctcgtccggc gcgaagtaga ggaaccgacc atgcaccagc gcgacgtcct gccccgggtc
      121 gtcgtcgagc agcacggcta cgtggtcgtt gccgtccaga tcgtgcagga cgcgggtcac
      181 ggtggctgtc cgtccagcca ggaagaggtc ctgggcgtcg gcgcgccgga ccccgggacg
      241 aagaagcacc cgactgccct ctcggatgac cacgccctcg acctcgagca cctcagggtc
      301 cggttgcggc ggcggctgca cccgccggcc tccttgggac agggaccgca ctgccccatg
      361 gaggcgcacc agcagctccg gcggcaggtc ttcgacctgg gcaaggagct ccgcggcccg
      421 cgggtcggtg cccctgacgg cccgcttctc ctcctcggtc agagtgagcg cccgcaggct
      481 gagcatctcg tccatctcgg tgccgtcgaa gaactcggtc gtactctccg gggcgacctg
      541 tggatggtcc ggcaggatga tcggcgagca cagcaccagg tcgtgagcgc caggcggacc
      601 ggccagcaca ggccacacgc ccgcgttgtg gcactgcgcg gcatacccac tcgcccactc
      661 gggcgggtcg gtgagcgaca ggaagcggcc acggtccacc ctcagcatga ggtgagccgc
      721 gacgagggag ctgcgtaggg cctcctgccg agagggaacc tgctgtcccc cgaggacggt
      781 ggtgttgtgc acctcgacgt ggaggcggag cgttccgtag gggcccggta gcacctctgc
      841 gcccatgacg acccggccac tcagcggcag ccgctcacgg accagccggc cgcccgcgac
      901 gtcctcgacc tcggtgccgc cgaccaccgt gaactcgcgt gtgaccgaag cggcgcacag
      961 ccctgccagg tcggcgtgga cgtccacctc ccgcggcagc gcctcgtcga acggcaggta
     1021 tgccgtgtcc cccgcgtcca ggcgcgacac cgtcaccatg cgtccgccca ccctctgctc
     1081 cacggtgcgc cgctgcacct gaaggaagcg gacccgggcc tgcagcgacc cgagcggtcc
     1141 gtccaagagc acctcggact cgaggctggc ccgctcggag gcatcggcgg tcgtgaacgc
     1201 cggcggggca agcaccccga actgccagcg cacgcggttc ttggcgtcgt cggcgcgata
     1261 ggggtagagg acgtacccct cgtagagcac tgcgtcggcg atggggcgca cctgctcgaa
     1321 ggtggtcact gctccgcctc cttcagcagc cgggtcactg cgtcgtccca gctgaccatg
     1381 gcgttggcgg cgcggtaccg gtacaaggca tcgaaggcgt cacgacccag ccgcagccag
     1441 gccgacccgg ggaagtgctg gtccatggcc tgccgccaga ccgcgaccgg cagcccgaac
     1501 gagacctcct tgtcccacgg gatcggcagc accgagaggc cctccggccc cgggcggaac
     1561 caggtgccgc tgaacagcat cagcagcggg acgacgccgt cgtgcaggga gtagaggtac
     1621 ttgttggcgg ccacctcgaa gtcgtagctg caggccaacg cgagcgccgt ctcggtggac
     1681 ccggcgaagc tcgggaccat ctgggtcacg aacgcgagct gaagcggctt gagggtctcg
     1741 ccccaccgct cacgcgaccc gaacaggtcg acgagcgcgg ccgcctcctc gtcgtcgtaa
     1801 cgccgtcgca ctggctcgat ccggatctgg gcacgcaggg cgactgcgtg gaccggcgcc
     1861 cccgaggact cggtcacgcg gatgcggaag agcacggtgg gtgcggcggc ataccgctgc
     1921 gcctcggccc cgaggcactc gaagtcgagc tggcccgtgg ctgcgacgtc gcccgggtca
     1981 ggcatgagcc accgcgctgc cgtgccggtc cacgagctgg ctcgccgcgc ggatcgcggc
     2041 gaagaaggcg tcgatcctgc cccagacctc ctgcccaccg ctgaagccga cccacgactg
     2101 gcggaccagc cccaccagct catagcaccg gtcgatggga acgaggaaac actcgaaggc
     2161 gtcgtcggtc cggcgcagca ggaccgcctc cacatcgggt tcgacctggc ccagaacggg
     2221 attcgcctcg cacaccaacg cccaggcccc gaggtcgagc agcgactccg ttgccccgcc
     2281 aggcccggga tagcaggcgg cgaaggactc agcgcccgtc tggaggaaga agaacgcgag
     2341 gtcgacgggg atctgcaagg cgtcccactg gccctggctg atcgccaccg agtcgacccg
     2401 acggctgcgc tcgggcagcg ccctgaaccg gcccgcccct gctccggacc cggtgaagag
     2461 caggaagcac gagcggcagg tgcacagcag acgttgggtc tgtaggtccg ccacgtggcc
     2521 atgccgtgag tcgatctcga cgctgcacag ctcgcagacc tcaggggcgg gaccaccgtc
     2581 ggccaccccc gcgtcgggag gggccggagc cggacgggtc agccgccgca gcccgagcag
     2641 cgggtcggca gggggcctca cgcgggcacg cccccgggaa gcgcgacctt ccagccggca
     2701 ccatcgggca gcaggggcag cggggacagg tgctcccctc ccaggtcgag cgcccgacct
     2761 gcaagccgga cgttgtaccg cgctccgcac tgggggcacg tcagcagttg gccgcggagg
     2821 gtccctgaca cgagttcccc ctcgcagtga ggacattcgt cgacataggc gtatgccgtg
     2881 ccgtccaggt tcgcgagcag cagccccagt ccgcccacgt cagtgtggac gatcaggccg
     2941 gggtccggtg gtacctggac ggactcccac gtgctctcgc ccgcgatcgc cccgcgggcg
     3001 cccaccggtt ccaggcctgg tcgcaggccg atctgcagca gtggcttggg tttcggcgca
     3061 gccaccaccc cgacgacgtc caccgagacc acctccggag caacctccag gatcgccgtc
     3121 tcgatggtca tggtgaccgt gacggaggag gaggggcagc cgctgcagct gccctgcaag
     3181 gtcagatgcg ccactcccac gtcgtcgacg ccgaggtagt cgatcccgcc cgcgtgggag
     3241 cccagatagg gccgcacgcg gtccagcgcc cgctggatcc gggcgtcgac cggatcgggg
     3301 tggaggtcgt ggagcagcag gagacccgcc acgagctcgt cgtcggccag ccggcgcagc
     3361 accgcgctcc cctcagtgag ctcgaccacg cgagccagcc ccgcggcata caggtccatg
     3421 acggcccgca cgaggctctc ggcacgcgcc tgggcgacca ggtccgaagg accgccgaac
     3481 tcgtcgagca gggtctcgat gcggctggac agctcctgga gctcgtgact gttcatgccc
     3541 ctcccccgcc gctagtaggg acggacggcc atccccggcg agtgcacctg ccgggtcacc
     3601 ccgccgccgc cggtgaacag gtgcaccccg cacggcaggc atgggtcgaa gctgcgcacc
     3661 gctcgcatga tgtcgatgcc cttgaagctg tcgggcgggt tctcctcgaa gatcggcgtg
     3721 tgctggaccg cgtcctcgta ggggccaggc gtgccgtagc tgtcgcgaac gctgccgttc
     3781 cacggggtcg gtggataggg gtggtagttc gcgatcttgc cctcacggat caccaggtgg
     3841 tgtgacagca cgccccggac cgcctcggtg aaccccacgc tgatggcctc gtcgggcacc
     3901 tcgaacggcg tccacgtctg ggtccttccg gcgcgcacct cggcgagcgc cttgtcgacg
     3961 aagtgcaggg ccagcgcggc catgtaggcc tggaagtagg tgcgtgcccg gttgcgctcg
     4021 agcgcgttgc tccactgcgg gatcttccac tcgaacctgg cttcgggctt gagcatcgtc
     4081 ctcggcaggg tgatcacgac gctgtgcccg gtggcctgga cgtagtcggt gttgaccagc
     4141 ccggagaggg cggtcgacca gagcctcgcg atagggccgc cgccggtgtc gagcgcaagg
     4201 tggtcggttc cgtcgaacca gcgcggtgac atcgtccagc tgtacgcgct ggagaagtcg
     4261 cgcttggccg gcttggggag cgtgtgctgg ttccaggggt gacgcacgtc aaccgggttg
     4321 cccagcgggt cgcgttggac gaagacctcg tgccccgcgt cggcccagtc gtcgtagtag
     4381 gagtggccga gcaggatgcg catgcccagg ttgatgtcga ccaggttgtt ggtcacgagc
     4441 ttgccgtcca ccacgatccc cggcgtcacg aacatcgcct tgccccactc gttcatcttc
     4501 cggtaggtga agtcgcagac ggcagggtcg ttcaggctgc cccagcagcc gagcaggact
     4561 cgtcgttcgc cgacgtgctc gtagccggga agggcctcgt agaagaagtc gaagaggtcg
     4621 tcgtgcaggg gcacgacctt cttcatgaac tcgacgtact tcatgaggcg ggtgaggtag
     4681 tcggtgaaca gctggatggt ggcgacagtc ccgaccccgc ccgggtagag cgtcgagggg
     4741 tggacgtgcc gaccttccat gaggcagaac atctctcgcg tcatgcggct catctgcagg
     4801 gcctcgcgat agaactcgcc ctccagcggg ttcagtgagc gcatgatgtc gccgatcgtc
     4861 cggaacccgt gctcgccggc gtgcggcgcc tcggtgctgt tggcccgttc cagcaccccg
     4921 gggttggtct ccttgaccat ccgttcgcag tagtccaccc ccaccaggtt ctcctggaag
     4981 atgttgtggt cgaacatgta ctcggctgcc tcaccgaggt tgatgatcca ctcgccgaga
     5041 tgtggcggcg ccacgccgta cgccatgttc tgcgcgtaga ccgagcaggt cgcgtggttg
     5101 tcgccgcaga tcccgcagat ccggctggtg atgaagtggg cgtcccgagg gtccttgccc
     5161 ttcatgaaga tgctgtagcc gcggaagatc gaggacgtgc tgtggcactc cctgacctcc
     5221 ttggccttga agtcgatggt ggcgtagatc ccgaggctcc cgacaatccg ggtgatcggg
     5281 tcccatgaca tctcgacgac gtcggagtcc acgtgcttgg tggtggtcat gagctctcct
     5341 cgcccctcac cagttcttgg tgtagccggt cgtgagtgcg gttcccttgg tgcgccacga
     5401 gggttccttg tcaacggtct tggctgtgac cccgcgaagc cgccggatga cggtgccgta
     5461 catcgtgctc gcggccgcgg agaccttgct cccaggcggc tcgtccatga agggcatgaa
     5521 cttgtccggg aacccgggca tcgtgcaggc gatgcagatg ccacccacgt tcgggcagcc
     5581 acccacgccg ttgatccagc cgcgcttcgg gacgttgcac ttgaccacag gcccccagca
     5641 gccgagcttg acgaggcatt tcggcgagcc gtactccgtc gcgaactgtc cctgctcgta
     5701 gtagccggcc cggtcacagc cctcgtggac ggtggcgccg aacagccact gcgggcgcag
     5761 ctgctcgtcc agcgggatca tgggcgcctg tcccgcgacc tggtagagca ggtacacgag
     5821 cgtctcgctc aggttgtccg ggtggatggg gcagccggga acgcacacga tgggtagccc
     5881 agccttggac ttccaggacc aaccgaggta gtccggcacg cccatggccc cagtcgggtt
     5941 gcccgccatg gcgtgtatgc cgccgtacgt cgcacaggtg cccaccgcga cgaccgcggt
     6001 ggccttgccg gccaagcggt cgagccactc cgaggtcggc atcggctgcc cggtatcggg
     6061 gttgttcccg aacgcggccc agtagccggc cgacttgatc ttctcgttgg ggatggagcc
     6121 ctcgacgacc aggacgaacg ggtccagctc tccccggtcg gccttgtgcc accactccat
     6181 gaagttgtcc gcaccttgct ccggcccgca ctcgaagtcg atcaggggcc agtgcacctg
     6241 gatgttcggc aggcccggaa gggcgccgag aacgatctcc tcgatgctcg gctgggttgc
     6301 ggccgtcagg gccaccgagt cgccgtcgca actcaggccc ccgttcatcc acaggatgtg
     6361 cagcggggcg acctcggccg ccgtggactg gggactctct gccgtggtcg tcatcgtgag
     6421 cggccgccct tctcgttgct gagaatggtg cgcgcggtct ccgacgggca gggcccggag
     6481 caggtcaggt cccagagctc gggatcgcgt gacgccatgc cgatctgtcg agcatatggc
     6541 tgcccaggac agaactgtcc ggacgttttg cgaacgattc cgccattccc ggattcacgg
     6601 atttggcggc tgtcggtgga tctgttcggc cgtgcaggca ggcgtctacc gtcggtattc
     6661 cccctctatt tccacgggtg gagcgcacca tggcggagac gagagcggac gcctcgcgag
     6721 aggcgccgga cgtcacgacg acaccggtc
//
LOCUS       DASYFY010000584         3293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_147551, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000584 DASYFY010000000
VERSION     DASYFY010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147551"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VGN19_11945"
     CDS             <1..729
                     /locus_tag="VGN19_11945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEV7196644.1"
                     /translation="GLTAYTAILQLGAIVATFLYFWRDIVRLAVAWGSGLRSGEARTH
                     HDYQLAWAVIVGSIPVGIVGFVLKDVISGPLRSLWVVAFALLGWSVVMWLAESRHAML
                     DGRGEQRGEGSVTLMDGLVIGLVQCMALVPGVSRSGATISAGLFRGLDRVTATRLSFF
                     MAIPALTAAGLFEAAHERSHLKLLGVGQMALGVLVSFIVAYASIAWLLRFVSTNKITA
                     FVWYRVAVGVILIGVLATGALSAT"
     gene            733..1461
                     /locus_tag="VGN19_11950"
     CDS             733..1461
                     /locus_tag="VGN19_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_4193 family putative phosphomutase"
                     /protein_id="HEV7196645.1"
                     /translation="MPTCLLVRHGHSSANGEGLLAGRLPGIHLTEAGRDQAARLAQAL
                     TGVPVVRVVSSPLERCLETATPLAAAAGVELIVDQDLQECAYGAWTGRKLAELAKEPL
                     WATVQDDPMEARFPEDPAYAAESLTEMAQRVTTAVRRIDAEVREEHGEAAVWVAVSHG
                     DLVKAVLADATGSGLQHFQSYTADPASVSAVRYGTRHTFLLAANVITTDLSRFVPAPQ
                     SQPEGDAVVGGGVGGVGEAPREQG"
     gene            1471..2010
                     /locus_tag="VGN19_11955"
     CDS             1471..2010
                     /locus_tag="VGN19_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3090 domain-containing protein"
                     /protein_id="HEV7196646.1"
                     /translation="MAVNDFDPPDRFVAGTVGPPGQRTFFLQASAGRRLLSVSLEKQQ
                     VAVLAERINDLLDSYAGGAGGDHAATDVVDNAPLDTPIEDDFRVNTMSLAWDEARGVV
                     VIECLDRDPDNPVENTEPEVLVEEPRLVRVVLTPDRARAFARRAQSIVAAGRPPCPFC
                     GGPLETEGHICPRANGYKR"
     gene            1938..2819
                     /locus_tag="VGN19_11960"
     CDS             1938..2819
                     /locus_tag="VGN19_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO1664 family protein"
                     /protein_id="HEV7196647.1"
                     /translation="MPVLRRPAGDRRAHLPSRERVQTLTEARAQRPSPLDVLASDDLE
                     VIGRLVDASNLALLVRLGGDPGLLAIYKPVVGERPLWDFPDGTLAGREVAAWAISSTG
                     GWDIVPETVLRTGPHGLGSVQRWVGDPEAEAEYAVSLTAPGTVPDGWVEVLEGEDAAG
                     RPVVLIHEDSPGTRAVAAFDAVINNSDRKGSHLVREGTALRGFDHGVSLHEDDKLRTV
                     FWGFAGEPLSAPELARISRVHDAAVDHDSSLRAQLDELLTAGEISALVRRCRALLDRA
                     AYPRPSGGWPAIPWPPL"
     gene            2854..>3293
                     /locus_tag="VGN19_11965"
     CDS             2854..>3293
                     /locus_tag="VGN19_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013117239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEV7196648.1"
                     /translation="MISWPAPFIPQVPGTGHPLQLFDTSTGVVRAVTPGPTARMYVCG
                     ITPYDATHLGHAATYVTFDLVGRVLRDAGHAVTYVQNITDVDDPLLERAHRDGVDWQD
                     LAADEIALFREDMTALGVIPPDHYVGVVESIEPVGAAVHALVKQG"
BASE COUNT          463 a         1142 c         1167 g          521 t
ORIGIN      
        1 ggcctgacgg cctacacggc catcctccag ctgggtgcga tcgtggcgac cttcctgtac
       61 ttctggcgcg acatcgtccg gctggccgtg gcctgggggt ctggcctgcg cagtggcgag
      121 gcgcgcaccc accatgacta ccagctggcc tgggccgtga tcgtcggctc gatcccggtc
      181 ggcatcgtcg ggttcgtcct caaggacgtc atcagcggac cactgcggtc cctgtgggtc
      241 gtcgccttcg cgttgctggg gtggagcgtg gtcatgtggt tggccgaaag ccgccacgcg
      301 atgctcgacg gtcgcggtga gcagcggggc gaggggagcg tcaccctcat ggatggcctc
      361 gtgatcggcc tggtgcagtg catggcgctg gttccggggg tctcgcgctc cggggcgacg
      421 atctccgctg gactgttccg cggactcgac cgggtgacgg cgacgcggct gtcgttcttc
      481 atggccatcc cggccctgac cgcggccggg ttgttcgagg cggcccacga gcggtcccac
      541 ctgaagctgc tcggcgtcgg ccagatggcg ctcggggtcc tcgtgtcgtt catcgtggct
      601 tatgcgtcca tcgcctggct cctgcggttc gtcagcacga acaagatcac ggcgttcgtc
      661 tggtaccgcg tagccgtcgg cgtcatcctg atcggcgtgc tcgcaaccgg cgcgttgtca
      721 gcgacctgac cggtgccgac ctgtctgctc gttcggcacg gacactccag cgccaacggt
      781 gagggcctgc tcgcgggccg gctacccggc atacatctga ccgaggcggg ccgcgaccag
      841 gctgcccggc tggcgcaggc cctgaccgga gtccccgtcg tgcgggtggt gagcagcccc
      901 ttggagcggt gcctcgaaac cgcgacgccg ctggccgcgg ccgccggggt cgagctgatc
      961 gtggaccagg acctgcagga gtgcgcctac ggcgcgtgga ccgggcgcaa gctcgcggag
     1021 ctggccaagg agccgctgtg ggccacggtc caggacgacc ccatggaggc gcgctttccg
     1081 gaagaccctg cgtatgccgc cgagagcctc acggagatgg cccagcgggt caccactgcg
     1141 gtacggcgaa tcgacgccga ggtgcgcgag gaacacggtg aggccgccgt gtgggtggcc
     1201 gtgagccatg gtgatctcgt caaagcggtc ctcgcggacg ccaccggtag cgggctgcag
     1261 cacttccaga gctacaccgc ggatccggcg tcggtgtcgg ccgtgcggta cggcacccgg
     1321 cataccttcc tgctcgcagc caacgtcatc accacggacc tgtcacgctt cgtgcccgcc
     1381 ccgcagagcc aacccgaggg cgacgcggtc gtcgggggag gcgtcggagg cgtcggcgaa
     1441 gccccccgcg agcagggtta gagtctgggc atggcggtca acgacttcga tcctccggac
     1501 cggttcgtcg ccgggaccgt gggtccacct gggcagcgca ccttcttcct ccaggccagt
     1561 gcgggacgcc ggctgctcag cgtgtccctg gagaagcagc aggtcgcggt gctggccgag
     1621 cgcatcaacg acctgctcga cagctacgcc gggggagcgg gcggcgatca cgcggccacc
     1681 gacgtggtcg acaacgcgcc tctggacacg ccgatcgagg acgacttccg ggtcaacacc
     1741 atgagcttgg cgtgggacga ggcgaggggc gtcgtggtca tcgagtgcct cgaccgagat
     1801 cccgacaacc cggtcgagaa caccgaaccc gaagtcctgg tcgaggagcc acggctcgtc
     1861 agggtggtgc tcacgcccga ccgcgcgcga gccttcgcac gtcgcgcgca gtcgatcgtc
     1921 gcagcgggcc ggccaccgtg cccgttctgc ggcggcccgc tggagaccga agggcacatc
     1981 tgccctcgcg cgaacgggta caaacgctga ccgaggcccg ggcccagcgc ccctcgcccc
     2041 tcgacgtcct cgcgtccgac gacctggagg tcatcggtcg actcgtcgac gcgtccaacc
     2101 tcgccctgct cgtgcggttg gggggcgacc ccggactgtt ggccatctac aagcccgtcg
     2161 tgggggagcg gccgctctgg gacttccccg acggcacgct ggcgggccgc gaggtggctg
     2221 cctgggccat cagctcgacc ggcggttggg acatcgtgcc cgagacggtc ctgcgcaccg
     2281 gtccgcatgg tctgggctcg gtgcagcggt gggtcgggga ccccgaggct gaggcggagt
     2341 atgccgtgtc gctcaccgcg ccagggaccg tcccggatgg ctgggtcgag gtcctcgagg
     2401 gtgaggatgc cgcaggtcgg ccggtcgtgc tcatccatga ggactcaccc gggacccggg
     2461 ccgtcgccgc gttcgatgcc gtcatcaaca actccgaccg caagggctcg cacctcgtgc
     2521 gagaggggac ggcgctacgc ggtttcgacc acggcgtcag cctgcacgag gacgacaagc
     2581 tgaggacagt gttctggggt ttcgcaggcg agccgctgtc cgcgccggag ctcgcccgga
     2641 tctctcgggt ccatgacgca gcggtggacc acgactcgtc gctacgcgct cagctcgacg
     2701 agctgctcac ggcgggggag atctccgcac tggtccggcg ctgccgcgcc ctgctcgacc
     2761 gggccgcgta cccacgtccg tccgggggat ggcccgccat tccctggccg cccttgtgaa
     2821 cgagctgccg cacggccccc gtaggcttcg tccgtgatct cctggcccgc ccctttcatc
     2881 ccccaggtgc cgggaaccgg ccatccgctg cagctcttcg acaccagcac cggggtcgtg
     2941 cgcgcggtaa cccccggtcc gaccgcacgg atgtacgtct gcgggatcac cccgtacgac
     3001 gcgacccacc tgggccacgc cgcgacctat gtgacgttcg acctggttgg ccgggtcctg
     3061 cgggacgccg gccatgccgt gacgtatgtg cagaacatca ccgacgtgga cgacccgttg
     3121 ctggagcgag cccaccgtga cggcgtggac tggcaggacc tggccgccga cgagatcgcc
     3181 ctgttccgtg aggacatgac ggccctcggg gtgatccccc ccgatcacta cgtcggggtg
     3241 gtcgagagca tcgaaccagt cggcgcagca gttcatgccc tggtcaaaca agg
//
LOCUS       DASYFY010000585         4046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1146674, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000585 DASYFY010000000
VERSION     DASYFY010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4046
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146674"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1347
                     /locus_tag="VGN19_11970"
     CDS             <1..1347
                     /locus_tag="VGN19_11970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEV7196649.1"
                     /translation="FDLMATATDEDWGVISRRLAKVPVALGQWRESLLSAAAKGNVAP
                     RRQIEACVTQCADLTAPDGYFTKLLEGARAGDAELSAGVAAELATAVGAASAAYGEMG
                     RWLASELLDRAPEADACGRERYTLLSRAFLGARVDLEETYRWGQEELARITAEMQQVA
                     DQIKPGSTVKEAIAALDADPAYQLHGTDELKAWMQGKADEVIADMAGTHFDIPDPVRT
                     IECLIAPTQTGGIYYTGPSEDFSRPGRMWWSVPKGITQFGTWRELTTVYHEGVPGHHL
                     QVAQTVFRSELLNTWRRMYAWTSGHGEGWALYAERLMAELGYMDDPGNRMGLLDGQSL
                     RAARVVIDIGVHCGFDAPEEVGGGPWTYDKAWEYLTAHANQGEAWLRFELDRYLGWPG
                     QAPSYKIGERLWMQLRDQVREREGDAFSLKDFHRRALDIGGVGLDTLREAVLGELA"
     gene            1405..3276
                     /locus_tag="VGN19_11975"
     CDS             1405..3276
                     /locus_tag="VGN19_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015938473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HEV7196650.1"
                     /translation="MDLAVTVIAIVATVIVVAGLARRFGVPAPLALIVVGVAASYVPF
                     ISEPQLSSQLVLVGLLPPLLYAAAVRTSLVDFRANKTTIGLLSVGLVLFTTAGVGLVV
                     WRLLDVPVLIALALGAIVAPPDAVAATAVARRIGLPRRIVTILEGESLVNDATALVSL
                     RTVVVAFMTATAVSVGSVARDFGWAVLGGVLIGAAVGLGIAMVRKHVTDPAIDTSISF
                     IVPFLAYLPAEHFHASGVLAVVVAGLLLGHKSPVVQTASSRLSERINWTTVQFILENA
                     VFLMIGLQMRRLVGDVAASNLGFARIAWVCTAILLAVMVLRPVYVFPALWLTNRVQRN
                     RPPVKWAHNAIISWAGMRGVVTLAAAFTLPTQTPERSVLVLAAMAVTVGTLLIQGTTL
                     PWLARALRVRGPDPREDALQEATILQASVAAGLKALEECKDVDLDTIEALRSRAEKRT
                     NVVWERLGQGREGSEETPSENYRRVRMIMLGAEREELLRIRDSGTVDQEVLAHVLGQL
                     DIEESMLDRIEERTSTLRDEPLLPPERPDGECQHLADHHDRFVAPRTPHGCEECLRDG
                     MTWVHLRLCLDCGHVGCCNSSVGKHAEGHYHEVSHPVMRSFEPGEAWRWCFVDERLG"
     gene            3296..3943
                     /locus_tag="VGN19_11980"
     CDS             3296..3943
                     /locus_tag="VGN19_11980"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEV7196651.1"
                     /translation="MTVSLVLASASPARRKLLHAAGIDPSIVVSGVDESAVTAAAEQT
                     YGELAPEDVALLLARAKAEDVASQIQGAIVVGCDSVLALDGQVHGKPVDAADAVLRWR
                     RMRGRSGVLHTGHWVVDTRDEDEAGTRATLGATASTTVHFARLSDAEVEAYVASGEPL
                     RVAGAFTIDGLGGPYVTAIEGDPSNVVGLSLPLLRELLQELGLAWHELRSPGLPT"
BASE COUNT          562 a         1431 c         1464 g          589 t
ORIGIN      
        1 ttcgacctca tggccaccgc caccgacgag gactgggggg tcatcagccg caggctggcc
       61 aaggtgcccg tggctctcgg ccagtggcgg gagagcctgc tcagcgccgc ggccaagggc
      121 aacgtcgcgc cgcgccgcca gatcgaggcg tgcgtcacgc agtgcgcgga cctcacggcc
      181 ccggacggat acttcaccaa gctcctcgag ggcgccaggg caggcgacgc cgagctctcg
      241 gccggggtag ccgccgagct ggccaccgcc gtcggcgccg cgtccgccgc ctatggcgag
      301 atgggtcggt ggctcgcgag cgagctgctc gaccgcgccc ccgaggcgga tgcctgcggt
      361 cgcgagcgct acaccctgct gtcgagggcc ttcctcgggg cgcgggtcga cctcgaggag
      421 acctaccgct ggggccagga ggagctcgcc cgcatcaccg ccgagatgca gcaggtcgca
      481 gaccagatca agccggggtc gacggtcaag gaggccattg ccgccctgga cgccgacccg
      541 gcataccagc tgcacggcac ggacgagctg aaggcgtgga tgcagggcaa ggccgacgag
      601 gtcatcgccg acatggccgg cacccacttc gacatccccg acccggtgcg caccatcgag
      661 tgcctgatcg ccccgacgca gaccggcggc atctactaca ccggcccgag cgaggacttc
      721 agcaggccgg gacggatgtg gtggtcggtg cccaagggca tcacccagtt cggcacgtgg
      781 cgcgagctca ccaccgtcta ccacgagggc gtgccgggcc atcacctcca ggtcgcccag
      841 acggtgttcc gctccgagct cctcaacacc tggcgccgca tgtacgcctg gacctccggg
      901 cacggcgagg gctgggcgct gtatgccgag cggctcatgg ccgagctggg ctacatggac
      961 gacccgggca accggatggg cctgctcgac ggtcagtcgt tgcgcgctgc ccgcgtggtg
     1021 atcgacatcg gcgtccactg cgggttcgac gcccccgagg aggtcggcgg cggcccgtgg
     1081 acctacgaca aggcctggga gtacctcacc gcgcacgcca accagggtga ggcgtggttg
     1141 cgcttcgagc tcgaccgcta cctcggctgg cccggccagg cgccgtcgta caagatcggc
     1201 gagcggctct ggatgcagct gcgcgaccag gtccgcgagc gcgagggaga cgccttcagc
     1261 ctcaaggact tccaccgccg ggcgctggac atcggtgggg tcgggctcga caccctgcgc
     1321 gaggcggtgc tgggcgagct cgcctgaccg acaccaggcg ggcacgacgg cacgacagac
     1381 ggccgtccct gcgaggatgt ccgcgtggac ctggctgtca ccgtcatcgc gatcgtcgcg
     1441 acggtcatcg tggtggccgg actggcgcga cggttcgggg tgcccgcacc tctggcgctc
     1501 atcgtcgtcg gcgtcgccgc gtcctacgtg ccgttcatca gcgaacccca gctgagctcc
     1561 cagctggtcc tggtgggcct gctcccaccg ctgctctatg ccgcggcagt gcggacctcg
     1621 ctggtggact tccgtgccaa caagaccacg atcgggctgc tctccgtcgg cctggtgctc
     1681 ttcacgaccg cgggggtcgg gctggtggtc tggcggctgc tcgacgtacc ggtgctgatc
     1741 gcgctcgccc tgggagcgat cgtggcgccc cccgatgccg tggcggcgac ggcggtggct
     1801 cgccggatcg gcctgccacg ccgcatcgtg acgatcctcg agggcgagtc gctcgtgaac
     1861 gacgcgacgg ccctcgtctc gctgcggacg gtggtcgtcg ccttcatgac cgccaccgcg
     1921 gtttcggtgg gttcggtcgc ccgggacttc ggctgggcgg tcctcggcgg cgtgctcatc
     1981 ggggccgcgg tcgggttggg gatcgcgatg gtgcgcaagc acgtgacgga cccggcgatc
     2041 gacacctcga tctcgttcat cgtgccgttc ctggcgtacc ttcccgcaga gcacttccac
     2101 gcctccgggg tgctggccgt ggtcgtcgca ggactgctgc tcggccacaa gtcgcccgtc
     2161 gtgcagaccg cctcgtcgcg gctgagcgag cgaatcaact ggacgacggt gcagttcatc
     2221 ctcgagaacg ccgtcttcct gatgatcggg ctgcagatgc ggcgcctggt gggcgacgtc
     2281 gcggcgtcga acctggggtt cgcccggatc gcctgggtct gcacggcgat cctgctcgcc
     2341 gtgatggtcc tccgtccggt gtacgtcttc ccggccctgt ggctcacgaa ccgcgtccag
     2401 cggaaccgac cgcccgtgaa gtgggcccac aacgcgatca tctcgtgggc ggggatgcgc
     2461 ggggtcgtga cgctcgcggc ggccttcacc ctgccgaccc agacgccgga gcgcagtgtg
     2521 ctcgtcctcg cggccatggc ggtcaccgtg gggacgctcc tcatccaggg gaccacgctg
     2581 ccctggctgg cccgcgctct gcgggtgcgg ggcccggacc cccgtgagga tgccctccag
     2641 gaggcgacca tcctccaggc ctcggtcgcc gcggggctca aggccctcga ggagtgcaag
     2701 gacgtcgacc tggacaccat cgaggcgctc cgctcacgcg ccgagaagcg cacgaacgtc
     2761 gtgtgggagc gactcgggca ggggcgcgag ggcagcgagg agacaccgag cgagaactac
     2821 cgtcgggtcc gcatgatcat gctcggcgcc gagcgcgagg agctgctgcg catccgcgac
     2881 agcggcacgg tggaccagga ggtcctcgcg cacgtgctcg gacagctcga catcgaggag
     2941 tcgatgctgg accggatcga ggagcgcact tcgaccctga gggacgagcc gttgctgccg
     3001 ccggagcgcc cggacgggga gtgccagcac ctcgccgacc accacgaccg gttcgtcgcc
     3061 cccaggaccc cccacggctg cgaggagtgc ctgcgcgacg gcatgacctg ggtgcacctg
     3121 cgactgtgcc tcgactgcgg ccatgtcggc tgctgcaact cctcggtggg caagcacgcg
     3181 gaggggcact accacgaggt gagccacccg gtgatgcgca gcttcgagcc gggcgaggcg
     3241 tggcgctggt gcttcgtgga cgagcggctg ggctagaccg gatagcgttg ccgccgtgac
     3301 tgtctcgctg gtgctcgcct ccgcctcccc tgcccgccgg aagctgctgc acgccgcggg
     3361 gatcgacccc agcatcgtgg tcagcggcgt cgacgagtcg gcggtcacgg cggccgctga
     3421 gcagacctac ggcgagctcg cccccgagga cgtggccctg ctcctggcca gggcgaaggc
     3481 cgaggacgtg gcctcgcaga tccagggggc catcgtggtg ggctgcgact cggtgctcgc
     3541 gctcgacggc caggtccatg gcaagcccgt cgacgcggcc gacgcggttt tgcgatggcg
     3601 gcggatgcgt ggacgatccg gtgtgctgca cacggggcac tgggtggtcg acacccgcga
     3661 cgaggacgag gccggcaccc gagccaccct cggcgccacg gcatcgacga ccgtgcactt
     3721 cgcccggctc tcggacgccg aggtggaggc gtatgtcgcc agcggcgagc cgctgcgcgt
     3781 cgccggggcc ttcaccatcg acgggctggg cggcccctac gtcaccgcga tcgaaggcga
     3841 cccgagcaac gtcgtcggcc tgtcgctccc cctgctgcgc gagctgctgc aggaactcgg
     3901 cctcgcgtgg cacgagctgc gctcccccgg cctgccgacc tgaagtgccg ccgcgcgagg
     3961 aggctgtggc cgcgacccgt cgcgccgagc ccggaagacc gtccctcgcg tggggcgtcg
     4021 tcactgccgc agcggtggcc caggcg
//
LOCUS       DASYFY010000586         1977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_462831, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000586 DASYFY010000000
VERSION     DASYFY010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462831"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1024
                     /locus_tag="VGN19_11985"
     CDS             <1..1024
                     /locus_tag="VGN19_11985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HEV7196652.1"
                     /translation="WTSEEDLFTHYRVDEQIAKAMDRKVWLPSGGSLVIDRTEAMTVV
                     DVNTGKFVGSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV
                     VRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLIEVFSETCEHCGGRGIIIHTD
                     PVEKSSSDGGSSSSSAPGSGSARTSRPRRGRASASTQPVEPQVTHSGPTPAQIAAAAH
                     AAAVKSAGDHHDDDLSELEPYEPAAPLDAALQDAEPIDAEPLTTEPASTEPATTEPVA
                     AERIDAAQVQPVQQAQPVQAAPRRRKRGRVMAPAGPPRHVDEESDEASDDAPESAVAE
                     AAADAS"
     gene            1223..1531
                     /gene="rplU"
                     /locus_tag="VGN19_11990"
     CDS             1223..1531
                     /gene="rplU"
                     /locus_tag="VGN19_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEV7196653.1"
                     /translation="MYAIVRAGGRQEKVSVGDVLIIDKVSGKPGDSLDLTPLLVVDGS
                     TITSDADKLAKVTVKAEVVKPAKGPKITIMKFKNKTGYRKRQGHRQHLTQVKITSIDA
                     "
     gene            1580..1849
                     /gene="rpmA"
                     /locus_tag="VGN19_11995"
     CDS             1580..1849
                     /gene="rpmA"
                     /locus_tag="VGN19_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006501251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEV7196654.1"
                     /translation="MAHKKGASSTRNGRDSNSQRLGVKRFGGQLVNAGEIIVRQRGTH
                     FHPGEGVGRGNDDTLFALVAGNVKFGTRRRRRVINIVPAQTADAS"
BASE COUNT          365 a          680 c          641 g          291 t
ORIGIN      
        1 gtggacctcc gaggaggacc tgttcaccca ctaccgggtg gacgagcaga tcgccaaggc
       61 catggaccgc aaggtctggc tgccctcggg cggctcgctg gtgatcgacc gcaccgaggc
      121 gatgaccgtc gtggacgtca acacgggcaa gttcgtcggc tcgggcggaa acctcgagga
      181 gacggtcacc aagaacaacg tcgaggctgc cgaggagatc gtccgccagc tccggctgcg
      241 cgacatcggc ggcatcatcg tcatcgactt catcgacatg gtcctggagt ccaaccgcga
      301 cctggtggtg cgccgcctcc tggagtgcct gggtcgcgac cggaccaagc accaggtcgc
      361 cgaggtcacc tcgttgggct tggtgcagat gacccgcaag cgggtggggt cagggctgat
      421 cgaggtcttc tccgagacct gtgagcactg tggtggccgg gggatcatca tccacaccga
      481 cccggtcgag aagtcctcca gtgacggtgg ctccagctcc tcgtccgcac ccgggtcggg
      541 ttcggcgcgc acgagccgac cacggcgcgg acgcgccagt gccagcacgc agccggtcga
      601 gccgcaggtg acccactcag ggccgactcc cgctcagatc gcggctgcgg cccatgcggc
      661 agcagtgaag tccgcgggcg accaccatga cgacgacctg agcgagctgg agccctacga
      721 gccggccgct ccactggacg ccgcgctcca ggacgccgag ccgatcgacg ccgaaccact
      781 caccaccgaa ccagcctcca ccgaaccagc caccacggaa ccagttgctg ctgagcgcat
      841 cgacgctgcg caggtccagc cagtccagca ggcgcaaccc gtccaggccg ccccccgacg
      901 ccgcaagcgc ggccgggtga tggctcctgc tggcccgcct cgacacgtcg acgaggagtc
      961 cgacgaggcc tcggacgacg cgccggagag cgctgtggcg gaggccgctg cagacgcttc
     1021 gtgagctcga ggggctcccg gaccgacgct ggtttgtccg ggagcgcccc cacccggtaa
     1081 tcttgcccct tggtgcgccc accgtccggc gtccgcgact gaattgtccc aagctccgta
     1141 ttttctcaac tcagtcgcgg gtagctgctg gccggttcag acagagagcg cgtgcctccc
     1201 gaagtatgaa agagagttcc ccgtgtacgc gattgttcgc gcaggtggtc gtcaggagaa
     1261 ggtctccgtc ggtgacgtcc tgatcatcga caaggtcagc ggcaagcccg gcgacagctt
     1321 ggacctcacg ccactcctgg tggtcgacgg ttcgaccatc accagcgatg ccgacaagct
     1381 cgccaaggtc acggtcaagg ccgaggtcgt caagcctgcc aagggcccca agatcacgat
     1441 catgaagttc aagaacaaga cgggctacag gaagcgtcag ggccatcgtc agcacctgac
     1501 ccaggtcaag atcacctcga tcgacgcctg agtctggccc ctttagaacc caagacttag
     1561 cagaaggcag gtactgacaa tggcacacaa gaagggtgcg tcctcgaccc gtaacggtcg
     1621 ggactcgaac tcccagcgac tcggcgtgaa gcgcttcggc ggccagctgg tcaacgcggg
     1681 cgagatcatc gtccggcagc gcggcacgca tttccacccc ggtgagggcg tcggccgcgg
     1741 caacgacgac acgctgttcg cgctcgtcgc gggcaacgtc aagttcggca cgcggcgtcg
     1801 ccgccgggtc atcaacatcg tcccggcgca gaccgcggac gccagctgat ctttgaggta
     1861 tgccgcgtgg cacggccacg cggcatacct cctcgaaggg ggcgggcctg aacgggcccg
     1921 ctcccttcct gcgtctccca cctagaatcg ggaggcgctg cggcatagag accgcac
//
LOCUS       DASYFY010000587         2398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_568866, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000587 DASYFY010000000
VERSION     DASYFY010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568866"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            660..941
                     /locus_tag="VGN19_12000"
     CDS             660..941
                     /locus_tag="VGN19_12000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196655.1"
                     /translation="MATKSDRQAARETVVKYHESQLAVLVERVGEAIDGFRVGERDAF
                     DVDQVLFQYSRAAKELWKFCNLGDPELGANIMRERPAVDWWDRGAPRKP"
     gene            complement(1142..>2398)
                     /locus_tag="VGN19_12005"
     CDS             complement(1142..>2398)
                     /locus_tag="VGN19_12005"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEV7196656.1"
                     /translation="VSIRLFGDTVFGLRALAPLITAAGVVLAALTARELGGSRRAQGL
                     AAWGYASTALPLLGGHYFVTGTLDLAFWAAALLGVTRALLRDARWWLAAGAVLGLAAD
                     NKLLVAILVLSLAVGILVLGPRSVLRSHHLWAAVVIALVLAAPTLLYQTTHHFPQLTM
                     ARALNQHNASDVRAQLVPYQVLLIGPPLFEVAVLGFVALLRRPSWRPVRGIALATVVA
                     LAITFAAGGQIYYAFGLLAFLLAAGWATDRGPTWLLVTAVALNGTVNALIALPLLPLS
                     QVSIQAALNPTIGDQVGWPTYVATLRAAYERIPTGQRPRVVVFTGNYGEAGAVARYGR
                     DLPPVFSAQNELYFEGPPPQNRDLVLAWTEDFTDLNRHFEDCQLMSTMDNGAGVDNEE
                     QGSVVALCRVPSPGWAALWPTLQHYD"
BASE COUNT          421 a          773 c          852 g          352 t
ORIGIN      
        1 gcctccacac caggtagggc agggaaccgt caacgtcgat gtcccggacg gagcgccata
       61 aacgtggggc ccagcgtcac cgtcaccagg gcgaacatcg agaacccgga gcatcgcagc
      121 cgtctgtcca ccaggctcgc aacatcctgg cagcgttggg gatcgccacc ctcgaggaac
      181 tcaccgacga cccgccgata accgccagcc cgcaacccga gatcgacggt tcacctacgc
      241 cgtgggtcca cgtcacgtct gcgcgagagc tcaccgactc gttcttctgt ggcagcagcc
      301 ccctgccaaa ctgtccggca gggggctggt tgaggtgggg ctggcgcctc ggaccggcga
      361 cgccctcacg ggggctggtc gtacgaccac caccctgttg cgacgacggc gcggggtctc
      421 gggcgaacgt ctggatattt gctaacgcgt cttcctggcg gggactggat ctccggactg
      481 aacagagatc gccagaacag tcgctaccag atccatccag ctcaccgccg acaaacgacg
      541 gccagaaggc gaccatgtcg ctgttgaaag ggccgccgtc cctggctgag ggcgctggct
      601 tgaacgtcct catttgccgc acgtcgcgcg gttgcgaggt gtcggactag cctcaatctg
      661 tggccacgaa gtccgaccga caagctgcgc gagagacggt ggtgaagtac cacgagagcc
      721 agttggctgt cttggtggag cgcgtaggcg aggcgatcga cggcttccgc gtcggcgagc
      781 gggatgcctt cgacgttgac caggtcctct tccagtactc gcgggcggcc aaggaactgt
      841 ggaagttctg caaccttggt gaccccgagc ttggcgcgaa catcatgcgc gagcgtccag
      901 cggtcgattg gtgggaccgc ggagcgcccc gaaagccgtg actgaagtcg cgcgtgcccg
      961 aagcggtgcc cacgccgccg ccagcgtggt cgtcaggtgg cggtatgact gttcgcctgg
     1021 caggcccagc ctcgggcgtg gtggtccggc tgaccgtggc cgggctacga cgccgcggcc
     1081 gcggactccg tcggtcgacg gccaggtcga cggatggagt gaccatgcgc tggcgggtcg
     1141 ctcagtcgta gtgctgcaag gtcggccaga gggcggccca gccgggggac gggactcggc
     1201 atagggcgac cacgctgccc tgttcctcgt tgtcgacgcc ggcaccgttg tccatggtgc
     1261 tcatcagctg acagtcctcg aagtgcctgt tcaggtcggt gaagtcttcg gtccaggcga
     1321 gcacgaggtc acggttctgg ggtggaggcc cttcgaagta cagctcgttc tgagcgctga
     1381 agacgggggg caggtcgcgg ccgtatcggg cgacggctcc tgcctcaccg tagttgccag
     1441 tgaagaccac cactctgggg cgctggccgg tcgggatccg ctcataggcg gcgcgcaacg
     1501 tggcgacgta cgtcggccag ccgacttggt cgccgatcgt ggggttcagc gccgcttgga
     1561 tgctgacctg tgacaagggc agaagcggca gcgcgatcaa cgcgttcacg gtgccgttga
     1621 gggcgaccgc agtgacgagc agccaggttg ggccccggtc ggtggcccac ccggcggcca
     1681 gcaggaacgc cagtaggccg aaggcgtagt agatctgccc cccggctgcg aaggtgatgg
     1741 cgagggcgac cacggtagcc agggctatgc ctcgcaccgg ccgccacgag ggccggcgca
     1801 gcagtgcaac gaagccgagg accgcgacct cgaacagggg tggcccgatc agcagaacct
     1861 ggtacgggac cagctgtgct cggacgtcgc tggcgttgtg ttggttcagc gcgcgagcca
     1921 tcgttagctg cgggaagtga tgggtcgtct ggtaaagcaa tgtgggcgcg gccagcacca
     1981 gggcgatgac cactgcggcc cacagatggt gtgagcgcag gaccgaccga ggccccagaa
     2041 ccaggatccc gaccgccagg gaaagcacca gaatcgcgac gagcagcttg ttgtcggctg
     2101 cgaggcccag gaccgctccc gcagccagcc accaccgggc gtcgcgcagc agcgcgcgcg
     2161 tgacccccag cagtgcggcc gcccagaagg cgaggtcgag ggtgccggtg acgaagtagt
     2221 ggccacccaa caacggcagc gcggtggagg cgtagcccca ggcggccagc ccctgagcgc
     2281 ggcgactccc gccgagctca cgcgcggtca gggccgccag aacgacgccg gcggcggtga
     2341 tcagcggtgc cagtgcccgc aacccgaaga cggtgtcgcc aaacaggcgg atcgacac
//
LOCUS       DASYFY010000588         2136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1358087, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000588 DASYFY010000000
VERSION     DASYFY010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1358087"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..470)
                     /locus_tag="VGN19_12010"
     CDS             complement(192..470)
                     /locus_tag="VGN19_12010"
                     /inference="COORDINATES: protein motif:HMM:NF014479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muconolactone Delta-isomerase family protein"
                     /protein_id="HEV7196657.1"
                     /translation="MKFLVLWQLDLTTVSPEVARAIGRMPEYGARLEAEGKVLSRYHV
                     VGAHGGAWIYEVDSHEEFERLLARAPVFNFATYAIHALADMDDHPGDA"
     gene            563..937
                     /locus_tag="VGN19_12015"
     CDS             563..937
                     /locus_tag="VGN19_12015"
                     /inference="COORDINATES: protein motif:HMM:NF013334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEV7196658.1"
                     /translation="MHELSLCEGIYAIVDRASDGRRVEQIHLRVGRLRQVVPQTLVHC
                     WGLLTESTELAGSQLTIEDVPIRLRCMACGEVTQVEASLDLTCAACGNVQVEVVAGEE
                     LMVTSLELGESRHEGRLKERHG"
     gene            930..1721
                     /gene="hypB"
                     /locus_tag="VGN19_12020"
     CDS             930..1721
                     /gene="hypB"
                     /locus_tag="VGN19_12020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEV7196659.1"
                     /translation="MGRFHRHADGTEHEHHHDHDVRTGDHSAYQTGPERVVVLERIFT
                     ENDRAAAANRASFDAAGVQCVNVMSSPGAGKTTLLARTLAYLADGGVRAGVIEGDIET
                     TIDADRLAGLGAQISLINTGQGFGGECHLDAPMVARALKALDLSSLDLVLVENVGNLV
                     CPAEFDVGAHRRVMVFSITEGEDKPLKYPVMFRCVDAVIVNKMDLLPHLDFDLALFER
                     NLAQVNPDAVVVHVSARTGDGLDDWHRWLTGSTQLPKVVSSRKSR"
     gene            complement(1699..>2136)
                     /locus_tag="VGN19_12025"
     CDS             complement(1699..>2136)
                     /locus_tag="VGN19_12025"
                     /inference="COORDINATES: protein motif:HMM:NF024776.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196660.1"
                     /translation="VVTRTFAARPSAWPEVREFLVATLAQVDPLQAASPEVQRAVGDA
                     LLGSAGSPAGTFQISVRITPDSVEVEVLRDVPPQGGPLPAGPGQPASFAAWFSDLLAR
                     DGLSQAQAARQLGVSVRTVGRWVHGETEPRMRQMRRVTETFGN"
BASE COUNT          357 a          744 c          717 g          318 t
ORIGIN      
        1 ctcggcggcg ctctcgaatt cgctcgctga caacaaggtg tctgctggcg ccaaggtcac
       61 ccatgctggt cgtggtcatc gggcctccaa ggacgccctc cactgttcgc ctgatccggg
      121 ggtccgtcat cagccgaatg acggatttcg cgacccgccc ccgcgaccca accggcccgg
      181 cccgacgcgg ctcaggcgtc gcctgggtga tcgtccatgt cggctagagc gtggatcgcg
      241 taggtggcga aattgaagac gggcgcgcgg gccagcaggc gctcgaactc ctcgtgcgag
      301 tccacctcgt agatccacgc cccaccgtgg gcaccgacga cgtggtacct cgacaggacc
      361 ttgccctccg cttctaggcg cgctccgtac tcgggcatcc ggccgatggc ccgagccacc
      421 tcaggcgaga ccgtcgtgag gtcgagctgc cagagcacga ggaacttcat gccaaccagc
      481 atgcccccac cgcgagctcc atggaggtcg acctggtggc actggtgctg cgaagatggg
      541 acggcccagt gagggaggcc gtatgcacga gctgtcgctg tgcgagggca tctacgcgat
      601 cgtcgaccgc gccagtgatg ggcggcgggt cgaacagatc cacctgcgcg tcgggcggct
      661 gcgacaggtc gtcccgcaga cgctcgtcca ctgctggggc ctgctgaccg agtccaccga
      721 gctggccggc tcccagctga cgatcgaaga cgtcccgatc cggttgcgct gtatggcctg
      781 cggcgaggtc acccaggtcg aggcgtccct cgacctcacc tgtgcagcct gcggcaacgt
      841 ccaggtcgag gtcgtcgcgg gggaggagct catggtgacg tcgctggagc tcggcgagtc
      901 gaggcacgag ggccgactga aggagcgcca tgggtaggtt ccaccgccac gccgacggca
      961 ccgagcacga gcatcaccac gaccacgacg tgcgcacagg cgaccactcg gcataccaga
     1021 ccggtcccga aagggtggtc gtcctcgaac gcatcttcac cgagaacgac cgcgccgcag
     1081 cagcgaaccg agcgagcttc gacgcggccg gcgtccagtg cgtgaacgtg atgtcctccc
     1141 ctggggcggg aaagaccact ctcctggcgc ggacccttgc ctacctggcc gacggcgggg
     1201 tgcgcgccgg ggtcatcgag ggcgacatcg agacgaccat cgacgccgac cgcctggccg
     1261 ggctgggtgc ccagatctcg ctgatcaaca ccggccaggg attcggggga gagtgccacc
     1321 tcgacgcacc gatggtcgcg cgcgccctga aggctctcga cctgtcgtcg ctcgacctgg
     1381 tgctcgtcga aaatgtcggc aacctcgtct gcccagccga gttcgacgtc ggcgcccacc
     1441 gacgggtgat ggttttctcg atcaccgagg gcgaggacaa accactcaag tacccggtga
     1501 tgttccggtg cgtggacgcg gtcatcgtca acaagatgga tctcctacct cacctcgact
     1561 tcgacctcgc cctgttcgaa cggaacctcg cgcaggtgaa ccccgacgct gtggtcgtcc
     1621 acgtgagcgc gaggaccggc gacggactcg atgactggca ccggtggctg acggggtcca
     1681 ctcagctccc gaaggtcgtc agttcccgaa agtctcggtg acccggcgca tctgacgcat
     1741 cctcggctcc gtctcgccgt gcacccacct gcccaccgtg cgcaccgaca ccccgagctg
     1801 tcgcgccgcc tgggcctgcg acagtccgtc tcgcgccagc aggtccgaga accaggctgc
     1861 gaacgacgcc ggttgacccg gacccgcagg cagcggacct ccctgtggag gaacgtcgcg
     1921 gagcacctcg acctccacgc tgtcaggggt gatgcggacg gagatctgga aggtacccgc
     1981 ggggctgccc gcggacccga gcagggcgtc gccgaccgcc ctctggacct cgggcgaggc
     2041 ggcctggaga gggtcgacct gggccagcgt ggcgaccagg aactcgcgga cctcgggcca
     2101 ggcgctcggg cgcgcggcaa aagtccgggt cacgac
//
LOCUS       DASYFY010000589         4921 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1042219, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000589 DASYFY010000000
VERSION     DASYFY010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1042219"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1931
                     /locus_tag="VGN19_12030"
     CDS             <1..1931
                     /locus_tag="VGN19_12030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SEC-C metal-binding domain-containing protein"
                     /protein_id="HEV7196661.1"
                     /translation="EGMHQAIEAKEGVDIQNENQTLATITLQNYFRMYDQLSGMTGTA
                     QTEAAELYSIYKLGVVPIPTNRPMVRKDQADLVYRTEEAKFTAVVDDLVERHAQGQPV
                     LVGTVSVEKSEYLSDQLRRRGVPHEVLNAKQHEREAAIVAQAGRKGAVTVATNMAGRG
                     TDIMLGGNPEFMAVATLKQQGLDPEETPEEYEAAWDAALVKAEEAVKAEHDDVTRLGG
                     LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLQDDLMRLFNAAMVDRFMTTAK
                     MSDDVPIESKMVSRSIQSAQGQVEGRNFEIRKNVLKYDDVLNRQRQVIYEERRRVLEG
                     EDLHEQIRHFINDVVGGYVDAETSEGFPEDWDLDRLWSALKTLYPISVTPQDVEAAAG
                     GSLTADTLREQITSDAHHAYDARELELGEEVMREVERRVVLSVLDRKWREHLYEMDYL
                     QEGIGLRAMAQRDPLVEYQREGFQLFEAMNESIKEESVGYLFNVQVDVDQPTDQGSDV
                     QPMSVSEMLAGSGLSSADGPAASVDGELETLAGTLDEERPESLVEAVAARQDAADRPG
                     RSEETHPTFRAKGLEQPQRSARDLQYSAPNETGGVDQRQVTAASDILTPEQLEGVSRN
                     SPCPCGSGKKFKMCHGKA"
     gene            complement(1942..2493)
                     /locus_tag="VGN19_12035"
     CDS             complement(1942..2493)
                     /locus_tag="VGN19_12035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rv3235 family protein"
                     /protein_id="HEV7196662.1"
                     /translation="MSAGLVGALASQGSLAPLRIVPSPRHRPPVLAESEIAPWEPPPA
                     SGAGYIQEALAVDFSAATDEQLFGVRPTSRHDLPDPRSWAAHVAQGLVEVMAGARPAP
                     QLLRWTTPEVYAVVARRASVSTRRGLPATRRATVRSVRVCEPADGVAEACAVVVDGPR
                     IRALAMRLVGLDGRWRVEALQVG"
     gene            complement(2490..3317)
                     /locus_tag="VGN19_12040"
     CDS             complement(2490..3317)
                     /locus_tag="VGN19_12040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196663.1"
                     /translation="MGASAAGFGALTGAAIALARVTSDRWSAATATGGTAAGGTVGPD
                     QLLVLGAAGAALLLASWLILGTVAALVAHLPGRVGLLAGWMAAHWAPALSRRVAAALV
                     GAATMGSLTPAAGIAAPAPPTVSAPPAATATTADGPGFTSTAPFTGAGPWNSKGPIVS
                     AESGAADQSGHPGWVPTRPVVAPAATPRLLTTTPTRPHPDGEVVVHRGDTLWDLARRQ
                     LGPRASDAEVAQAWPRWYAANRAVIGADPGRLLPGQLLVAPEPRTPLAPEADRQAHR"
     gene            3504..4103
                     /locus_tag="VGN19_12045"
     CDS             3504..4103
                     /locus_tag="VGN19_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196664.1"
                     /translation="MRWDDLFDDLEAQWEAQARRELDGEVADRTRRERAAIGLRDRLA
                     AERQRAQHEEAQRQPDRRQGDRRVRGVQLSLIEGSVIAGRVDDVGDGWLVVGSSAGSY
                     LVPFSALVAITGLAQRAMTPGLSRSFGFGHALRGLSRDRAVVSVLDLSGVTSTGTIDA
                     VGRDLLELSEHPADLARRPENVMARRLVPFAAVAAVRQV"
     gene            complement(4118..4342)
                     /locus_tag="VGN19_12050"
     CDS             complement(4118..4342)
                     /locus_tag="VGN19_12050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015772089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196665.1"
                     /translation="MTKRFIQLSEVSEVLDISSAQAYALVRSGELPAIKVGGRGQWRV
                     EVTELETYIQRMYSETKTFVAAHPFGQGAE"
     gene            4594..>4921
                     /locus_tag="VGN19_12055"
     CDS             4594..>4921
                     /locus_tag="VGN19_12055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196666.1"
                     /translation="MSDLPIPTAARLRPPRWTDARLVVGVLLVLGSVVLGSVVVRAAD
                     QRSAVYTARGALVPGQRLTEADLVRVDVHLGSLSDRYLTASAPLPTPLVVLRAVPAGE
                     LVPVQAL"
BASE COUNT          789 a         1693 c         1696 g          743 t
ORIGIN      
        1 acgagggcat gcaccaggcc atcgaggcga aggagggcgt cgacatccag aacgagaacc
       61 agacgctcgc caccatcacc ctgcagaact acttccgcat gtacgaccag ctgtcgggaa
      121 tgaccggtac ggcccagacc gaggccgccg agctctactc gatctacaag ctgggcgtcg
      181 tacccatccc gaccaaccgc cccatggtgc gcaaggacca ggccgacctc gtctaccgca
      241 ccgaagaggc caagttcacg gccgtggtgg acgacctggt cgaacggcat gcgcagggcc
      301 agccggtcct ggtcggcact gtgtccgtcg agaagagcga gtacctctcc gaccagctcc
      361 gtcgtcgcgg cgtgccgcac gaggtgctca acgccaaaca gcacgagcgc gaggccgcga
      421 tcgtcgccca ggccggtcgc aagggcgccg tcacggttgc caccaacatg gcgggtcgag
      481 gcaccgacat catgctcggg ggcaacccgg agttcatggc cgtcgccacc ctcaagcagc
      541 aagggctgga tcctgaggag acgcccgagg agtacgaggc agcctgggat gccgccctcg
      601 tcaaggccga ggaggccgtc aaggcagagc atgacgacgt cacccggctg gggggcctct
      661 acgtcttggg gaccgagcgg cacgagtctc gtcgcatcga caaccagctt cgtggtcgtt
      721 ccggtcgcca gggcgacccc ggcgagtcgc ggttctacct gtcgttgcag gacgacctga
      781 tgcggctgtt caacgccgcc atggtcgatc gcttcatgac cacggccaag atgagcgacg
      841 acgttcccat cgagtccaag atggtcagcc gctcgatcca gagcgcccag ggccaggtcg
      901 aaggccgcaa cttcgagatc cgcaagaacg tcctcaagta cgacgacgtc ctgaaccgcc
      961 agcgccaggt catctacgaa gagcgtcgtc gcgtcctcga gggtgaggac ctgcacgagc
     1021 agatccggca tttcatcaac gacgtcgtcg gcggctacgt cgatgccgag acgtcggaag
     1081 gtttccccga ggactgggat ctggaccgcc tctggtcggc gctgaagacg ctctacccca
     1141 tctccgtgac cccgcaggat gtggaggctg ccgcaggcgg ctcgctcacc gcggacaccc
     1201 ttcgcgagca gatcacctcc gatgcccatc acgcgtatga cgcgcgtgag ctggagctcg
     1261 gcgaggaggt catgcgtgag gtggagcgtc gagtggtcct gtcggtgctg gaccgcaagt
     1321 ggcgcgagca cctgtacgag atggactacc tgcaggaggg catcggtctg cgagccatgg
     1381 cccagcgcga cccgttggtc gagtaccagc gtgagggctt ccagctgttc gaggcgatga
     1441 acgagtccat caaggaggag tccgtcggct acctgttcaa cgtgcaggtc gacgtcgacc
     1501 agcccactga tcagggttcc gacgtgcaac ccatgagcgt ctcggagatg ctggccggct
     1561 ccgggctgtc cagtgccgat gggcccgcag cctccgtgga cggcgagctc gagaccctgg
     1621 ccggcacgct cgacgaggaa cggccggaga gcctggtcga ggccgtggct gcgcgtcagg
     1681 acgccgcaga ccgcccgggc cgatccgagg agacccatcc gacgttccgc gccaagggcc
     1741 tggagcagcc ccaacggtcc gcgcgcgacc tgcagtactc agcgccgaac gagaccgggg
     1801 gagtcgacca gcgccaggtg accgcggcca gcgacatcct gacgcccgaa cagctcgagg
     1861 gcgtgtcgcg aaacagcccc tgcccgtgcg ggtcggggaa gaagttcaag atgtgccacg
     1921 gcaaggcctg acgcagctcg ctcaccccac ctgaagagcc tcgactcgcc atcgaccgtc
     1981 cagacccacg agccgcatag ccaaggcgcg gatccggggt ccgtcgacca ccacggcgca
     2041 ggcctccgcc accccgtccg cgggctcgca gacgcgcacg ctgcgaaccg tcgccctgcg
     2101 cgtcgccggc aaaccacggc gggtggacac ggaggcgcgg cgcgccacca cggcatacac
     2161 ctctggggtg gtccatcgga ggagctgcgg agccggcctg gctccggcca tcacctccac
     2221 tagtccctgc gccacgtgcg ctgcccacga tcgagggtcg ggaaggtcgt gacggctggt
     2281 cgggcggacg ccgaagagct gctcgtccgt ggcggcgctg aagtccacgg ccaaagcctc
     2341 ctggatgtac ccggccccgc tggcgggcgg cggttcccac ggggcgatct cgctctccgc
     2401 gagcactggc ggtcgatggc gcggcgaagg gacgatgcgc aacggggcca gcgaaccctg
     2461 gctggccagc gcccccacca accccgcact caccgatgtg cctgacggtc ggcctccggc
     2521 gcgagcggag tgcgcggctc gggagccacc aggagctgcc cgggcagcag ccggccgggg
     2581 tcggctccga tgaccgcccg gttggcggcg taccaccgcg gccacgcctg ggcgacctcg
     2641 gcgtcgctcg cccgcggtcc cagctggcgg cgtgcgaggt cccacaaggt gtcgccacgg
     2701 tgcacgacga cctcgccgtc tgggtgtggc ctcgtggggg tggtggtcag gagtcgtggg
     2761 gtcgctgccg gggccacgac agggcgagtc gggacccaac ccgggtgccc agactggtct
     2821 gcggccccag actccgcgct gacgatgggt cccttgctat tccagggccc cgcgcccgtg
     2881 aaaggcgcgg tactggtgaa cccgggtccg tcggccgtcg tcgctgtggc ggccggtggc
     2941 gcggagaccg tcggtggcgc gggggcggcg atccctgcgg ccggtgtcag agagcccatg
     3001 gtcgcggccc cgacgagcgc ggccgcgacg cgacgcgaca gtgctggcgc ccaatgcgcg
     3061 gccatccacc cggcgagcag ccccacccgg ccgggaaggt gggcgaccaa ggccgccacc
     3121 gtgccgagaa tgagccagct tgccaacagc agcgccgccc cggcggcgcc taggaccaga
     3181 agttggtcgg gtcccaccgt cccgcccgca gccgtcccgc cggtggccgt cgccgcggac
     3241 caccggtctg acgttacccg cgccaacgcg atggcggcgc cggtcaacgc gccgaagccg
     3301 gcggccgacg cccccatccg ggccgtagcg cgggcaccgc gacggcgcct cgatgccgtt
     3361 cgatggccgc ctcgtgcgtg agcagcgtgc tggtatgact ccacagttcc ccctgtttgc
     3421 gtctatttac gtttgttcaa acatagcaga ctaggtttga tgagcatcct gcggtcagct
     3481 acgctccgcc gagagggggc gctatgcgat gggatgacct gttcgacgat ctcgaggcgc
     3541 agtgggaagc gcaggcacgg cgcgagctcg atggcgaggt ggccgaccgg acgagacgcg
     3601 agcgcgcggc catcggactg cgcgatcgtc ttgccgccga gcggcagagg gcccagcacg
     3661 aggaggccca gcgccagccg gaccggcggc agggggaccg aagggtgcgg ggcgtccagc
     3721 tcagcctcat cgaggggagc gtcatcgccg gccgtgtcga cgacgttggt gacgggtggt
     3781 tggtggtcgg cagctccgcg ggcagctacc tggtcccgtt ctcggcgctg gtcgccatca
     3841 ccggcctagc tcagcgggct atgacgcccg ggctgagccg gtcgttcggc ttcggtcatg
     3901 ccctgcgtgg cctcagtcga gaccgcgcag tcgtcagcgt cctggacctg tcaggagtga
     3961 cgagtaccgg gaccatcgat gcagtcggcc gggatctcct ggagctcagc gagcatcccg
     4021 ctgacctggc ccgacggccc gagaacgtga tggcccgacg gctcgtcccg tttgccgcag
     4081 tggcggcggt gcggcaggta tagctcctcg gcgctggcta ctcggcgccc tggccgaacg
     4141 ggtgggcggc gacgaaggtc ttcgtctcgc tgtacatccg ctggatatag gtttcgagct
     4201 cggtcacctc gacacgccac tgtccacgac caccgacctt gatcgccggc agctccccag
     4261 agcgaaccaa ggcatatgcc tgcgccgagg agatgtcgag gacttctgat acctctgaca
     4321 gttgaatgaa gcgcttcgtc actgaactac ccctgcctct actggcgact tgaccgtcac
     4381 catacgtctt cttgaccgac tgtttaccat gatcatcggt ctgcgtgggt cgggatcgtc
     4441 attctcgcat ctatagccgt tcggctgagt tggcatcccc tatctgtgga tcaggtctct
     4501 gcctgtggac tggcgcatcc tgaggcggcc tgactgcgtc atcatggcga ggccggcggg
     4561 ggagccggta tgccacacca gaagggggct ctcgtgtccg acctgcccat acccacggcc
     4621 gcccggttgc gtccgccgcg atggaccgac gcgcggcttg tcgtgggggt cctgctcgtg
     4681 ctcggatccg tggtgctggg gtccgtcgtc gtgcgtgcag cagaccagcg ctcagccgtt
     4741 tatacggccc gcggcgctct ggtcccggga caacggctga ccgaagcgga tctcgttcgc
     4801 gtcgatgtcc atctgggttc gctctccgac cggtacctga cggcctccgc gcccctgccc
     4861 acgcctctcg tggtgctgcg cgccgtcccc gctggcgagc tggtgcccgt gcaggccctc
     4921 g
//
LOCUS       DASYFY010000590         9599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1305094, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000590 DASYFY010000000
VERSION     DASYFY010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9599
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1305094"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..611
                     /locus_tag="VGN19_12060"
     CDS             <1..611
                     /locus_tag="VGN19_12060"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEV7196667.1"
                     /translation="YDQDPATPHVQFALTEIGDECRHSVMFARMAQKYGAPSYGPGPT
                     NHRLGRWFKTLADGPMVYAGILVAEEVLDILQRDLIADERVQPLTREVSRIHVVEEAR
                     HMRFARDEVVRRIASLSRAQRVRQRAVLAVVAHIISTSLVHPGVYSAVGLDPREAQQA
                     ARQNEHYSAKLRSSAESLTGFLQDTGLIGGPSVYLWRKARLL"
     gene            complement(504..3818)
                     /locus_tag="VGN19_12065"
     CDS             complement(504..3818)
                     /locus_tag="VGN19_12065"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEV7196668.1"
                     /translation="MTQREAPPAHWAALLGVREDGPGTLADRLGVAVYTAEPGPSGRW
                     LYVSSAVTGILGLTPEQLADDPGLWLAQLHPQDRDMVLARESSLAATGRVCSEYRVTR
                     PDGQVAWIMDDAVVEQGDDGHSVLHGFLLDITDRKRTELMLAAQADIVGAVAGGTALD
                     EVLTALAQAVEGLSGTLRCCIEVSADALVGARSHASPPLRVSARGVEDPPEAGRDPAA
                     LVRDAPILSPNGQPLGRLSLTYPPGTAPGAADGELPAWAARLAALALVRAAEHDAMAT
                     SVSLLTATLESTVDGILVVDRSGRIAGYNQTFATMWRIEPGLLSSGDDTTVMTSVLEQ
                     LVDPASFLAQVQWLYERPEKTSFDELAFRDGRVFERYSQPQRVDGSTVGRVWSFRDVS
                     DTRRLQADLRDTQDNLSLLVGQVRDHAILNLDPTGHVITWNAGAQRIKGYADEEILGQ
                     HFSVFYAPADVAAGKPARELEVALAEGHITGEGWRVRKDGSLFWASVVITALRDERGR
                     LRGFGNVTRDITDKHQADLDLQSQARLLELLGQVAIASNSASSVEEALEASLESFARF
                     GDWQLAHAYLADHDDPSSFRHSVWHEERPGDFADFKAATEAAEAGEVGLPQGVFSSPV
                     PIWLPSLPVDAGFGRGREAARAGLVAACAFPILVRDQPVGVLEFFSTEPHPTRDDVLP
                     VMHHLGTQLGRVIERDRAEHSLARHARQLERLSDRLETVLNSAGDGIYGLDADGTVTF
                     INAAGAQLVGLPAELIVGRPATDVIGIQPGALQDDSWGCEPGADGPPTLAIDGGPRVW
                     TGRHRSADGRVYDSESIAAPIVSDGAVFGSVVVFRDISERRAVERLKDQFISVVSHEL
                     RTPLTGIRGALGLLGGGATGSLPPQAARMVEVATTSTDRLIRLITDILDLERMTAGHL
                     TVHPEPTAASRLIEAAVEETAVLAECAQVGITVTNTPGEVMADPDRVLQILTNLVANA
                     VKFSDPGTVVQLRTTVVDGHVRFDVVDQGPGVPADQLEVIFEPFRQADASDTRLHGGT
                     GLGLAICRGIVEEHHGRIWVASERGRGSTFSFTLPRSDPSEETRLAPEVDGGATDQPG
                     VLEEPRQGLGAAPELG"
     gene            4020..4718
                     /locus_tag="VGN19_12070"
     CDS             4020..4718
                     /locus_tag="VGN19_12070"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEV7196669.1"
                     /translation="MSREHGSAHRAATPRWLVVAVSVVIALGGSLVVLEGTGLVPRLD
                     HALGISSLGSFGDWLWGLLLGALISGVALARTHLLRKRYRRSLAALLRQATELDHVKS
                     ARQQAALAQANAFSGQAAHQLRTPLAALGLAIEELTLHPETPRQVRADLARCRNEVDR
                     LADVISDLLTLARRGSLPSGQSTTDPAAVALHATRRWASSARAAGRELRVAGTMPKCQ
                     VRAPQGPPPRCLTC"
     gene            4712..5035
                     /locus_tag="VGN19_12075"
     CDS             4712..5035
                     /locus_tag="VGN19_12075"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7196670.1"
                     /translation="MLIDNALKHGEGDIEVSVDLLADSVRLRVADEGTPHRDWARRAS
                     PAGEGMGLALAEKLAVACGGQMVRAQQATTAFDLLLPRARSGVGGDLAQEADDLAGKV
                     RRRLA"
     gene            complement(4964..7531)
                     /locus_tag="VGN19_12080"
     CDS             complement(4964..7531)
                     /locus_tag="VGN19_12080"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196671.1"
                     /translation="MKRGRRVRGPGRTDGRALRRGLLLAAVVAVVLPLVVVVTALTGF
                     AQVQQAHGNAIRLLTAQRYQQDANMVHDAIRSDVLAAVLNSGAASGGVPALDQAVDAH
                     VAELNGDLRRLDGFALPSTVAAEVDRLRPSLQSYAAQAAALVDLAASDPSAARRQLPA
                     FESAFRVLDQPQAELTNSLAREAAAETAVAASRQTQAVASTIAAAAAMLAAMLLLAFF
                     LYRLTTDNDVLLRRLEDNAAQLAHGNDELQDAQQMAHIGSWQWDPASGVTQWSAEFYR
                     ILGLTPDTPGDHEELFVARVHSEDLAEVMRERQDVARGLADIHSQYRIVRPDGSVREV
                     RGLGKAIRDEKGALVRLVGTLQDVTEQRALERMKDDFVGVISHELRTPLTSIRGALGL
                     IAGGAVGTLPPKAQRMADVALNSCQRLVRLVNDILDVEKMAAGKLELDLAPLPAAEIV
                     AGAIAEMRAMADQASVTLAALPMDAVVLADQDRIAQALTNLISNAIKFSPAGGTVLVA
                     AGPTPESSESGDLVQFTVTDQGVGITADKLETIFGRFTQADASDARAKGGTGLGLPIC
                     RGIIEEHGGRIWATSEPGQGATFAFTLPAAPARGEEVGVGALPVGAVLVCDDDPDVVE
                     VLAAMLESHGYATLRAHSGPEALALAADQAPSLILMDLRMPGMSGWETIAELRAQATT
                     AEIPIIILSALAPDDMAVPAASSWLTKPVDQKALMASMRRALGTGATTSVLIVEDDED
                     LSEVLQAFFSDHGVRARVAHTGEQALAMCREVPPDLLVLDLGLPDIDGYAVVEAMRAD
                     ERLCSMPLLVYTGSQLTGADMRRLVLGETRFVTKSGESSADFARKVISLLRKVTTDS"
     gene            complement(7528..7926)
                     /locus_tag="VGN19_12085"
     CDS             complement(7528..7926)
                     /locus_tag="VGN19_12085"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEV7196672.1"
                     /translation="MSTDHDPFEEVEAGALEPAMAAFRDRARATNLTRVEVIAEALGV
                     MLEGALPEEERLKARGAAHSLAGSAGTFGFAEASELGRALEALLDDADGTEDPKARAA
                     RGSQLVAHLRVTLSDPAVAAPGSAAGDDSP"
     gene            complement(7926..8336)
                     /locus_tag="VGN19_12090"
     CDS             complement(7926..8336)
                     /locus_tag="VGN19_12090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020015364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196673.1"
                     /translation="MSGAGAARSHGGGARRILVVDDDELILEVAQMSLEVVGGWSVVT
                     ATDGQQGLDVARAELPDAIVMDVMMPGMDGPTAALALRADPATAGIPIVLLTAKVQAA
                     DRAAFAELPVRGVLGKPFDPMLLPAELSTMLGWS"
     gene            8520..8837
                     /locus_tag="VGN19_12095"
     CDS             8520..8837
                     /locus_tag="VGN19_12095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196674.1"
                     /translation="MNGVKSLWASVQGDPVFMRRVNGWLAVFWIAMIPISMWRGWLNS
                     VVYVSALSLWALVSGHWSAWQAARVEVQQQADAEAAKKTNVAEEVVQTIVEKTEIQPE
                     AAT"
     gene            complement(8830..9327)
                     /locus_tag="VGN19_12100"
     CDS             complement(8830..9327)
                     /locus_tag="VGN19_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEV7196675.1"
                     /translation="MSTDAIVVLRNDHKEVRSLFREFEAKSTTTARKGAIVRKVIQLL
                     TAHTYIENEVMYPAVRELLPDLEQDVLESYEEHHVADVLVAELSVMSPKDERFEAKTT
                     VLIENVRHHMDEEENDWFPKVREGLGRAQLQELGAQLLMAKKKAPRSPAQPSALKKVV
                     DAVVR"
BASE COUNT         1500 a         3280 c         3321 g         1498 t
ORIGIN      
        1 tctacgacca ggaccccgct accccgcacg tccagttcgc cctcacggag atcggcgacg
       61 agtgtcggca ttccgtgatg ttcgcccgga tggcgcagaa gtacggagcg ccttcgtacg
      121 gcccggggcc gaccaaccac cggttgggtc gatggttcaa gacgctcgcc gacggaccga
      181 tggtgtatgc cggcatcctc gtcgcggagg aggtcctgga catcctccag cgcgacctca
      241 tcgcggacga gcgcgttcag ccgctgaccc gcgaggtcag ccggatccat gtggtcgagg
      301 aggcgcggca catgcggttc gcccgagacg aggtggtgcg acggatcgcg agcctgagtc
      361 gcgctcaacg ggtgcgtcag cgggcggtgc tcgcagtggt cgcccacatc atcagcacca
      421 gcctcgtgca tccgggcgtc tactcggccg tcggcctgga cccccgagag gcccagcagg
      481 ccgcgcgaca gaacgagcac tactcagcca agctcaggag cagcgccgag tccctgacgg
      541 ggttcctcca ggacaccggg ctgatcggtg gcccctccgt ctacctctgg cgcaaggcgc
      601 gtctcctctg acggatcgct gcgcggcagg gtgaacgaga aggtcgagcc gcgcccgcgt
      661 tcgcttgcta cccagatccg accgtggtgc tcttcgacga ttccgcggca gatggccagt
      721 cccagaccgg tgccgccgtg caggcgggtg tcggaggcgt cggcctgacg gaacggctcg
      781 aagatcacct cgagctgatc ggcgggaacg ccggggccct gatcgaccac gtcgaaacga
      841 acgtgcccgt ccacgaccgt cgtgcgcagt tgtacgacag tgcctgggtc ggagaacttg
      901 accgcgttgg cgaccaggtt ggtcaggatc tggagaacgc ggtcggggtc ggccatgacc
      961 tccccgggcg tgttcgtgac cgtgatgccg acctgggcgc actcggccag gacggcggtc
     1021 tcctcgactg ccgcctcgat cagccggctg gccgccgtcg gctccggatg aacggtcagg
     1081 tggccggcgg tcatgcgctc gaggtcgagg atgtccgtga tcagccggat gagccggtcg
     1141 gtgctggtgg tcgccacctc caccatccga gcggcctggg gtggcagcga tccggtggct
     1201 ccgcccccga gcaaccccag ggctccgcgt atgccggtca gcggcgtccg cagctcgtga
     1261 ctgaccacgg agatgaactg gtccttgagc cgctccacgg cccgccgttc gctgatgtcg
     1321 cgaaagacca ccaccgagcc gaaaacggcg ccgtcggaca cgatcggcgc cgcgatcgac
     1381 tccgagtcat agacccttcc gtccgcgctg cggtggcgcc cggtccagac ccgtggtcca
     1441 ccatcgatgg ctagcgtcgg tgggccatct gcgcccggct cgcagcccca cgaatcgtcc
     1501 tgcagggcgc ccggctggat gccgatgaca tcggtcgcgg ggcggccgac gatcagctcc
     1561 gcaggcagtc ccaccagctg ggctccagcc gcgttgatga acgtgacggt cccatcggcg
     1621 tcgagtccgt agatgccgtc ccccgccgag ttcagcaccg tttcgagccg gtcggagagc
     1681 cgttccagct gtctggcatg cctggcgaga ctgtgctcgg cacggtcgcg ttcgatgacc
     1741 cggccgagct gggtgcccag gtgatgcatg accggcagca cgtcgtcgcg tgtcgggtgg
     1801 ggctcggtac tgaagaactc caggaccccg accggctggt cccgcaccag gatggggaag
     1861 gcgcaggcgg cgacaagacc ggcccgtgcg gcttcgcggc cgcggccgaa ccctgcgtcc
     1921 accggcagcg aaggcagcca gatcgggacc gggctggaga agaccccctg cgggagcccg
     1981 acctcgccgg cttcggcggc ctcagtggcc gccttgaaat cggcgaagtc gccggggcgc
     2041 tcctcatgcc acaccgagtg gcgaaaggac gacgggtcgt catggtcggc caggtaggca
     2101 tgcgcgagct gccagtctcc gaacctggcg aacgactcca gcgacgcctc gagcgcctcc
     2161 tccacgctgg aggccgagtt cgacgcgatg gccacttggc ccagcagttc cagcaggcgc
     2221 gcctgcgact gcaggtccag gtccgcctgg tgcttgtcgg tgatgtcgcg ggtgacgttg
     2281 ccgaacccgc gtaggcggcc ccgctcgtcg cgcagggcgg tgatcaccac gctggcccag
     2341 aacagagacc catccttgcg aacgcgccac ccctcgccag tgatgtgtcc ttcggcgaga
     2401 gcgacctcca gctcgcgagc tggcttgccg gccgccacgt ccgccggagc atagaagacg
     2461 gagaagtgct gccccaggat ctcctcgtcg gcgtaaccct tgatccgttg cgcgccggcg
     2521 ttccaggtga tgacgtgccc agtcgggtcc aggttgagga tggcgtggtc gcgcacctgg
     2581 ccgacgagca ggctcaggtt gtcctgggtg tcgcgcaggt cggcctgcag gcgccgcgtg
     2641 tcgctgacgt cccgaaagct ccacacccgc cccacggtcg agccgtcgac gcgctgcggc
     2701 tgcgagtacc gctcgaatac gcgcccatcg cgaaaggcga gctcgtcgaa gctggtcttc
     2761 tcggggcgct cgtacagcca ctgcacctgg gccaggaacg aggccggatc gaccagctgc
     2821 tcgagcaccg aggtcatcac cgtggtgtcg tcgcctgagc tcaacagccc gggctcgatg
     2881 cgccacatcg tcgcgaacgt ctggttgtat ccggcgatcc gacctgaacg gtcgaccacg
     2941 aggatcccgt cgaccgtcga ctccaaggtc gcggtcagga gcgacaccga ggtggccatg
     3001 gcgtcgtgct cggcggcgcg gaccagggcc agggcggcga ggcgggccgc ccaggcaggc
     3061 agctcgccgt cggctgcccc cggcgctgtg cccggagggt aggtcagtga caacctcccg
     3121 agcggctgcc cgttggggga caggatcggc gcgtcccgca cgagggcagc agggtcgcgc
     3181 ccagcctcag gggggtcctc gactccacgg gcgctgaccc tgagcggggg tgaggcgtgc
     3241 gaccgggcgc cgacgagggc gtccgcggac acctcgatgc agcaccgaag ggtcccggag
     3301 agtccttcca ccgcctgggc caacgcggtc agcacctcgt ccagcgcggt gccacctgca
     3361 actgctccga cgatgtcggc ttgagcggcg agcatcagct cggtgcgctt gcggtccgtg
     3421 atgtcgagca ggaaaccgtg aaggacgctg tgcccgtcgt cgccctgctc gacgactgcg
     3481 tcgtccatga tccaggcgac ctgcccgtcc gggcgggtga cccggtactc agagcagacg
     3541 cgaccggtgg cggcgagcga cgactcgcgg gccagaacca tgtcgcggtc ctgcggatgg
     3601 agctgggcca gccacagccc tggatcgtcc gcgagctgct ctggagtcag accgagtatg
     3661 ccggtgacgg ccgagctgac atacagccac cggccgctcg gtccgggctc cgccgtgtac
     3721 acggcaactc cgagccggtc ggccaacgtg ccgggtccgt cttcgcggac gccgagcagc
     3781 gcggcccagt gggcgggtgg cgcttcacgt tgagtcacag ttccccctgc ggctgcccgc
     3841 ggtcacgaga aggcgcagtc ccgggacaga ccgcgcgcgc acagcctaac gacgacggca
     3901 taccccatgg gtgttttggg ctgataacaa gcaaagggcg ccaatcgggc gaatgtgacc
     3961 tagattgaag agtgcgacag cacgccaacg agcccgggac tgccgtcaag gggacccaca
     4021 tgagcagaga gcacggctcg gcccatcgcg cagccacgcc ccgttggctg gtggtggcgg
     4081 tgagtgtcgt catcgccctc ggggggtcgc tggtcgtcct cgaggggacc ggtctggtcc
     4141 ctcgtctaga ccacgcactc ggcatcagca gcctcgggtc cttcggagac tggctctggg
     4201 gcctgcttct gggagcgctg atctcgggcg tcgccctcgc tcggacccac ctcctgagga
     4261 agcgctaccg gcggtcactg gcggccctgt tgcgtcaagc cacggagctc gaccacgtga
     4321 agtcggccag acagcaggcc gccctcgcgc aggcgaatgc cttcagcgga caggccgctc
     4381 accagctgcg taccccgttg gcggcactcg ggctggccat cgaagagctc accctgcacc
     4441 ccgagacccc gcgacaggtc cgggccgacc tggctcgctg ccgcaacgag gtcgaccggc
     4501 tggcggacgt catctcggac ttgctcaccc tggcccgccg cggttctttg ccttcagggc
     4561 agtccacgac ggacccagca gccgtggccc tgcacgcgac tcgccggtgg gcgtcctcgg
     4621 cgcgggccgc cggacgcgaa ctacgggttg cgggcaccat gcccaagtgt caggtccgtg
     4681 ccccgcaggg cccgcctccc aggtgcttga cgtgctgatc gacaacgccc tcaagcacgg
     4741 ggaaggcgac atcgaagtca gcgtcgacct gctggccgac agcgttcggc tccgggtggc
     4801 cgacgagggc actccccacc gtgactgggc gcggcgtgcc tcaccagccg gcgaggggat
     4861 gggcctggcc cttgccgaga agctcgcagt tgcctgcggc ggccagatgg tccgggcaca
     4921 gcaggccacg accgccttcg acctgctcct gccgcgggcg cgctcaggag tcggtggtga
     4981 ccttgcgcag gaggctgatg accttgcggg caaagtccgc cgacgactcg cctgacttgg
     5041 tcacgaaccg ggtctcgccg agcacgaggc ggcgcatgtc cgcgccggtg agctgggagc
     5101 cggtgtagac cagcaagggc atggagcaca ggcgctcgtc ggcgcgcatg gcctcgacca
     5161 cggcataccc gtcgatgtcc ggtaggccga ggtccaggac gagcaggtcc ggggggacct
     5221 cacggcacat cgccagggct tgttcgcccg tatgggctac ccgggcccgg acaccatggt
     5281 cgctgaagaa cgcctgcagc acctctgaga ggtcttcgtc atcctcgacg atgagcacgc
     5341 tggtcgtggc cccggtgccc agcgcccggc gcatcgaggc catgagggcc ttctggtcga
     5401 cgggcttggt gagccacgac gaagccgccg gaacggccat gtcgtccggg gcgagggcgg
     5461 acaggatgat gatggggatt tccgcggtgg tcgcctgggc gcgcagttcc gcgatggtct
     5521 cccagccgga catccccggc atccgcagat ccatcaggat caggctcggc gcctggtctg
     5581 cagcaagggc cagcgcttcg ggcccgctgt gcgcccgcag ggtggcgtag ccgtgggact
     5641 cgagcatcgc ggccagtacc tcgaccacgt ctgggtcgtc gtcacagacc agcacggcgc
     5701 cgaccggcag cgcgccgaca cccacttcct cgccacgcgc gggggcggcg ggcagggtga
     5761 acgcgaacgt ggcgccctgc ccgggctcgc tcgtggccca gatccgccca ccgtgctcct
     5821 cgatgatccc tcggcagatg ggcaaaccta ggcccgtgcc ccccttggct cgggcgtcgg
     5881 aggcatcggc ctgcgtgaac cggccgaaga tggtctcgag cttgtcggcg gtgataccga
     5941 cgccctggtc ggtgacggtg aactgcacca ggtcacctga ctccgaactc tcgggggtcg
     6001 gcccggcagc caccagcact gtcccaccgg ccggagagaa cttgatggca ttgctgatca
     6061 ggttggtcag tgcctgggca atccggtctt ggtccgccag caccaccgcg tccatcggga
     6121 gagcggcgag ggtgacgctc gcctggtccg ccatggcccg catctccgcg atcgcccctg
     6181 cgacaatctc ggccgcgggc aggggggcca ggtcgagctc gagctttcct gccgccatct
     6241 tctcgacatc caggatgtcg ttgaccagcc ggaccagccg ctggcagctg ttcagcgcca
     6301 cgtcggccat ccgctgcgcc ttgggcggaa gggtgcccac agcaccgccc gcaatgagtc
     6361 ccagcgctcc tcgaatcgag gtcagcgggg tgcgcagctc atggctgatc acgccgacga
     6421 agtcgtcctt catccgctcc agcgcacgct gttcggtgac gtcctgcagg gtgcccacca
     6481 gacgcaccag cgcgcccttc tcgtcacgga tggccttgcc caacccccgg acctccctga
     6541 cggagccgtc gggtcgaacg atccggtact gggagtggat gtcggccagg ccccgtgcga
     6601 cgtcctgccg ctcccgcatg acctcggcga gatcctcgga gtggacccgt gcgacgaaca
     6661 gctcctcgtg gtccccggga gtgtcgggag tcagcccgag gatgcgatag aactctgcgc
     6721 tccattgggt gactccggag gcgggatccc attgccagct cccaatgtgc gccatctgct
     6781 gcgcatcctg gagctcatcg ttgccgtgcg ccagctgggc ggcgttgtcc tccagccgac
     6841 gcaacaggac gtcgttgtcg gtcgtcaggc ggtacaggaa gaaggcgagc aggagcattg
     6901 ccgcgagcat tgcggcagcc gccgcaatgg tcgaagccac cgcctgggtc tgacggctgg
     6961 cggccacagc ggtctcagcc gcggcttctc gcgccaggct gttcgtcagc tcagcctgtg
     7021 gttggtcgag tactcggaag gcgctctcga acgccgggag ctgcctgcgg gcagcgctgg
     7081 ggtctgatgc tgccaggtcg accaaggccg cagcctgcgc ggcatacgac tgcaacgaag
     7141 gtcgcagccg gtcgacctcg gctgccacgg tggacggcag ggcgaagccg tcgagccgac
     7201 gaaggtcgcc gttgagctcg gcgacgtggg cgtccacggc ctggtccagc gccggaacac
     7261 ctcctgaggc ggccccgctg ttcaggaccg ctgcgaggac gtcggagcgg atggcatcgt
     7321 gaaccatgtt cgcgtcctgc tggtaccgct gcgcggtcaa caggcgtatg gcgttgccgt
     7381 gggcctgttg tacttgggcg aagccagtca gggccgtcac caccaccacc aaaggcaaca
     7441 ccacagcgac aacagcggcg agcagcaggc cgcggcgcag ggcgcgccca tcggtccggc
     7501 caggcccgcg caccctgcgt ccccgtttca cggcgaatcg tcccctgcag ccgaacccgg
     7561 ggcggcgacc gcggggtcgg aaagggtcac gcgcaggtgc gccaccagct gcgaaccgcg
     7621 cgcagcacgt gccttcgggt cctcggtgcc gtccgcgtca tcgagcagcg cctccaacgc
     7681 ccggccgagc tcgctggcct cagcaaatcc gaacgttcca gccgacccgg cgagcgagtg
     7741 cgcggcgccg cgggccttga gccgctcctc ctccgggagg gcaccctcga gcatgacgcc
     7801 cagcgcttcg gcaatgacct cgacccgggt gaggttcgtg gccctggcgc ggtcccggaa
     7861 ggcagccatc gcgggctcca aagcgcccgc ctcgacctcc tcgaacgggt catggtccgt
     7921 ggacatcagg accaccccag catcgtggac agctcggccg gaagcagcat ggggtcgaag
     7981 ggcttgccca gcacgcctcg caccggcagt tccgcaaagg cggcgcgatc ggccgcctgg
     8041 accttcgccg tgagcaacac gatggggatg cctgcggttg cggggtcagc gcgaagcgcc
     8101 aacgccgcgg tgggaccgtc catcccgggc atcatcacgt ccatgacgat cgcgtcgggc
     8161 agctcggccc gagccacgtc gaggccctgc tgcccgtcgg ttgccgtgac gacactccag
     8221 ccgcccacca cctcgaggct catctgggcc acttcgagga tgagctcatc gtcgtcgacg
     8281 acaaggattc ggcgcgcccc gccgccgtgg gaacgggccg cccccgcccc actcatcggc
     8341 aggctgaatg ctgtcggcga gttttcgggg ccatctgacc agtgtgcccg accatgaccc
     8401 gattcgctcc cttttgagcg gacgagaacc cgcgccacgg cctcaggacc tgcacaggtt
     8461 tgaagtcctt caatacgggg caggtgcggg cgtccgcact gcagagcaaa ggaggagaag
     8521 tgaacggagt caagtccctg tgggcgtctg tgcaagggga tccggtgttc atgcgacggg
     8581 tgaatggctg gctcgcggtc ttctggatcg cgatgattcc gatctccatg tggcgcgggt
     8641 ggctcaactc ggtggtctac gtgtccgcgc tgtccctgtg ggccctggtc tcggggcact
     8701 ggtcggcgtg gcaggcagcc cgggtcgagg ttcagcagca ggctgacgcc gaggccgcca
     8761 agaagacgaa cgtcgccgaa gaggtggtgc agacgatcgt cgagaagacc gagatccagc
     8821 ccgaggcggc tacctgacga ctgcgtcgac aaccttcttc agggcgctcg gctgagccgg
     8881 gctccgtggg gccttcttct tcgccatgag cagctgcgca ccgagctcct ggagctgcgc
     8941 gcggccgaga ccctcacgga ccttggggaa ccagtcgttc tcctcttcgt ccatgtggtg
     9001 gcggacgttc tcgatcagca cagttgtctt ggcctcgaag cgctcgtcct tgggagacat
     9061 gacggagagc tcagcgacca ggacatcggc gacgtggtgc tcctcatacg attccaggac
     9121 gtcctgctcc agatccggca ggagctcccg caccgcgggg tacatgactt cgttctcgat
     9181 gtacgtgtgc gcggtgagca gctggatcac cttgcgcacg atcgctccct tgcgcgctgt
     9241 ggtcgtggac ttggcctcga actcgcggaa cagggagcga acttccttgt ggtcgttgcg
     9301 cagcacgacg atggcgtcgg tggacatggt gcctcctggg gcaggtcgga cggggttggc
     9361 gggtgtcggg cggggttggc ggttgttgga cgggtcgggt tgggtcgatg gagaggccta
     9421 ctccagcccc taccccgcgc agtccggttc atgcggatcg tccgggggtg gcataaccca
     9481 cagaaggttg cattcgttac tggtcagtag cacgattgat gttaccggcc agtacaggtc
     9541 ggtgaccacg tcacgacgcg gaggtaccca agtcatgggc cactacaaga gcaacctgc
//
LOCUS       DASYFY010000591         1658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_254393, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000591 DASYFY010000000
VERSION     DASYFY010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254393"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VGN19_12105"
     CDS             <1..457
                     /locus_tag="VGN19_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HEV7196676.1"
                     /translation="PEPLGPRALIVPALVERLGWAACAVAAIVLALGTVVTGSGPHSG
                     DATTPARFGVDPRTASWLHADSVMLFCGLVVAVWLTARLTGSTAAPARSWVAVLGVTV
                     AQGAVGYTQYFTGLPWGVVLVHMFLATLLVVVLTRAMVRLRASPPDVAA"
     gene            529..1110
                     /locus_tag="VGN19_12110"
     CDS             529..1110
                     /locus_tag="VGN19_12110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEV7196677.1"
                     /translation="MPNQPRPGVRTVTEAKALSAMANPFRSRMMDALKVHGPSTASSL
                     AARTGQAVGSASHHLKVLSEAGLVQEAPELAKDRRERWWRLVDPGTRWSRADFADDTA
                     AVTAAYAAEALTLQRQFERTRDWNANAATVPEWDDASFATQNWMHLSPDELRQVTAEI
                     VEVLMRWSQRDVPQDGVEREPVFIFARGFPAQP"
     gene            1107..>1658
                     /locus_tag="VGN19_12115"
     CDS             1107..>1658
                     /locus_tag="VGN19_12115"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196678.1"
                     /translation="MTMYPSPVAPPPPLARNRNFGLLWFGEGVSVLGNATTGTLLPLL
                     AVVGFDAGPGWMGALTAAAWAPWLVLGLPAGAWVDRLPPRRVMIVSDLAAALTLASVP
                     IAWLLDVLTLPQLAVAAFCNGVCTVFFRSAYPGLVRQVAPREQQESVFARLFGTESAM
                     QVAGPGVGGLMAQFASSAGGLLLD"
BASE COUNT          211 a          615 c          548 g          284 t
ORIGIN      
        1 gcccgaaccg cttggccctc gcgcactgat cgtcccggcc ctggtcgagc gtctgggttg
       61 ggcagcctgc gccgtggccg ccatagtgct ggccctgggc acggtggtca ccggctcggg
      121 accacactcg ggcgacgcca ccacgccggc gcgcttcggg gtggatcccc ggaccgcgtc
      181 gtggctgcac gccgactcgg tgatgttgtt ctgcgggctt gtcgtcgcgg tctggctcac
      241 cgcgcgcctc actggttcga ccgccgcccc tgcacgctcg tgggtagccg tgctcggcgt
      301 gacggtcgcc caaggggctg tgggctacac gcagtacttc accggcttgc cctggggcgt
      361 ggtgctcgtc cacatgttcc tcgcgacgct gctcgtcgtc gtgctcactc gcgccatggt
      421 ccggttacgc gccagcccgc ctgacgttgc agcctgagac tgcgggacgc cacacgactt
      481 ccacaagccc gcttgtgcaa gaccagttgt acaactagcc ttgtacgcat gccgaaccag
      541 ccacgccccg gagtccggac cgtcacggag gccaaggccc tgtcggccat ggccaacccg
      601 ttccgctcgc gcatgatgga tgccctcaag gtgcacgggc catccacggc ctccagtctc
      661 gcggcccgca ccggacaggc tgtcggcagc gccagccacc acctcaaggt gttgtccgag
      721 gcgggcctgg tgcaggaggc tcccgaactc gccaaggacc gtcgagaacg ctggtggcgg
      781 ctggtggacc ccggcacccg ctggtcacgg gctgactttg ccgacgacac cgctgcggtc
      841 accgcggcgt acgccgccga ggcgctgacg ttgcaacgac agttcgagcg cacccgcgac
      901 tggaacgcca acgcggcaac cgtccccgag tgggacgacg cttccttcgc cacgcagaac
      961 tggatgcacc tgtcccccga cgagctccgc caggtgaccg ccgagatcgt cgaggtgctg
     1021 atgcgctggt cccagcgcga cgtgccccag gacggcgtcg agcgcgagcc ggtgttcatc
     1081 ttcgcccgag ggttcccggc ccaaccatga cgatgtaccc ctcaccggtt gccccgcctc
     1141 ccccactggc ccgcaaccgg aactttggcc tgctctggtt cggcgagggc gtcagcgtcc
     1201 tcggcaacgc gaccaccggg accctgcttc ccctgctcgc cgtcgtcggc ttcgatgcgg
     1261 gtcccgggtg gatgggtgcg ctgaccgccg cagcctgggc cccgtggctg gtcctggggc
     1321 tgcccgccgg tgcctgggtc gaccggctgc cacccaggcg cgtgatgatc gtgagcgacc
     1381 tcgccgcggc cctgaccctc gcgagcgttc cgatcgcctg gctcctggac gtgctgacct
     1441 tgccgcagct ggccgtcgcc gccttctgca acggtgtctg caccgtcttc ttccgatcgg
     1501 cctatcccgg cctggtgcgt caggtggccc cacgcgagca gcaggagtcg gtcttcgctc
     1561 gactcttcgg gaccgagtcc gccatgcagg tcgctggtcc cggggtcggc ggcctgatgg
     1621 cgcagttcgc ctcgtcagca ggcggactgt tgctggac
//
LOCUS       DASYFY010000592         1676 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_726902, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000592 DASYFY010000000
VERSION     DASYFY010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_726902"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..958)
                     /locus_tag="VGN19_12120"
     CDS             complement(<1..958)
                     /locus_tag="VGN19_12120"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196679.1"
                     /translation="MATGLADRELLRMHTHRGRLVLATTVLGSGLALLDGTIVNVALP
                     TIGRELHASLAGLQWVVNAYALTLASLILLGGSLGDRFGRRRIYAVGVTGFAIASIGC
                     ALAPTIEVLVAARAIQGICAALLVPGSLAILQASFHHDDRMAAIGAWTGLLGVATASG
                     PIVGGWLVERSWTWAFWVNVPLAALVVIMALRVVPESWNPHASKEFDLVGVALAVVGL
                     GALTWGLTVSSDGNRLVPLTVGLVGVVALGALAMWEQRSRHPLVPPSLFRNRVFTTIN
                     LVTLLVYAGLSGAILFLVMFLQTVAGWSALAAGSATLPLSIVM"
     gene            995..>1676
                     /locus_tag="VGN19_12125"
     CDS             995..>1676
                     /locus_tag="VGN19_12125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEV7196680.1"
                     /translation="MPELPEVQALVDFLAERVVGLAVTSVELGSFSVLKTFDPPPQAL
                     AGAPVDSVARHGKFVDLDCDGIHLVFHLARAGWLRWSDAMPNTVLRPGKSPIALRTRF
                     SDHSGFDLTEAGTKKRLAAYLVRDPHDVPGIATLGPDPLAADFTREAFGALLAGKRAQ
                     IKGLLRDQGFIAGIGNAYSDEILHVAKMSPFALASSLDDAATDRLYAALRETLAAAVA
                     AASGKPAAE"
BASE COUNT          273 a          618 c          567 g          218 t
ORIGIN      
        1 gcatcacgat gctcaggggc agcgtcgccg acccggcggc cagggctgac cagcccgcca
       61 ccgtctggag gaacatcacc aggaacagga tcgcgccaga cagacccgca tagaccaaga
      121 gggtcacgag gttgatcgtg gtgaacacgc ggttccggaa caggctggga ggcaccaacg
      181 gatgccgcga ccgctgttcc cacatcgcca gcgcgccgag ggcgacgacc cccacgaggc
      241 cgacagtgag cgggaccagg cggttaccgt ccgaggagac cgtcaggccc caggtcagcg
      301 cccccaggcc gaccaccgcg agggccaccc cgaccaggtc gaactccttg ctggcgtgcg
      361 ggttccacga ctcggggacg acacgcagcg ccatgatcac gaccagggcg gcgagcggca
      421 cgttgaccca gaacgcccag gtccagctcc gctccacgag ccagccgccc acgatgggac
      481 ccgatgcggt cgcgacaccg agcagcccgg tccacgctcc gatcgcggcc atccggtcgt
      541 cgtggtggaa cgacgcctgg aggatcgcca ggctccccgg cacgagcagg gccgcgcaga
      601 tcccctggat ggcgcgagcc gcgacgagca cctcgatggt gggagcgagt gcacacccga
      661 tcgacgcgat cgcgaagccg gtgaccccca cggcatagat gcggcgccgc ccgaagcggt
      721 caccgagcga acccccgagc aggatcagcg aggccagcgt cagcgcgtac gcgttcacga
      781 cccactgcag gccggcgagg ctggcgtgca gctcgcgtcc gatcgtcggc agcgccacgt
      841 tgacgatggt gccgtcgagt agcgcgagcc cactgccgag gaccgtggtg gcgagcacga
      901 gccgaccccg gtgggtgtgc atccggagca gctcgcggtc ggccaatccc gtcgccatac
      961 ggtcatcgtc gcatccctgg gccacaatgg gcccgtgccg gagctgccag aggtccaggc
     1021 gctcgtcgac ttcctcgccg agcgggtcgt cggcctggcc gtgacgagtg tcgagctcgg
     1081 gtcgttctcg gtgctcaaga ccttcgaccc gccaccgcag gccctcgccg gcgcgcccgt
     1141 ggattccgtt gcgcgccatg gcaagttcgt cgacctggac tgtgacggga tccacctcgt
     1201 gttccacctg gcacgggccg gctggctgcg ctggtccgat gccatgccca acaccgtgct
     1261 gcgtcctggc aagtcgccga tcgcgctgcg gacgcggttc tccgaccact cgggcttcga
     1321 cctgacggag gcggggacga agaagcggct cgcggcatac ctggtgcgcg atccccatga
     1381 cgtccccggg atcgcgaccc tcgggcccga cccgctggcc gcggacttca cccgcgaggc
     1441 gttcggggcc ctgctcgcgg gcaagcgcgc ccagatcaag ggcctgttgc gcgaccaggg
     1501 cttcatcgcc ggcatcggca acgcgtactc cgacgagatc ctccacgtcg ccaagatgtc
     1561 gccgttcgcc ctcgcctcgt cgctggacga cgcagccacc gaccgcctgt atgccgcgtt
     1621 gcgcgagacc ctcgcggccg ccgtcgcggc cgcttccggc aaacctgcgg ccgagc
//
LOCUS       DASYFY010000593         5575 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_148040, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000593 DASYFY010000000
VERSION     DASYFY010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5575
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148040"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..458)
                     /locus_tag="VGN19_12130"
     CDS             complement(<1..458)
                     /locus_tag="VGN19_12130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196681.1"
                     /translation="METLVAAAATVWPAAVSERSAHRLARPPRPAVVLGAFRTALYLE
                     LDQGRDVLPLVAHPGLRLPTAVTVPTQVVGWGVQPGEEVLVGGGEIRLPGVVVRAVRT
                     WRPVRVPTAGDGCAPDTAAVRTPLPWSDPARLLTERLRAGDGLSGAVAAMV"
     gene            521..2188
                     /locus_tag="VGN19_12135"
     CDS             521..2188
                     /locus_tag="VGN19_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196682.1"
                     /translation="MVDAELPSEGTVHELVGGITLDGLLALPSLAGAALPHDSAQLHR
                     TVVRASLLGSAAAPRQHLVCTDAAAMESWEAAGRQPILESARNGATALAVAGGRPDQL
                     ARWREQAREAGLPVVLVPATDRAERIVTEVLEAVLDQQSGILERVEEAHQILVDVVLA
                     GGGLEDLCQGLAEFLGGVAMVTSSDGRVLAQAGSEQALATASALSCFDKTGRLITERE
                     PVGIRQSQSANAQRAMVRIAAGQTNHGLLALFVEDRRLTADDVHLLERAATVAALAIT
                     KDQAVSAVESKYRAEFLRDALSGRAGPPPEAVAHARALGWNIDRRLVVVVAETDEDDL
                     HTTRPPEEVSALQQRFARAWSQTMGVRDATAPVVGFSQEVVALVAVPQGSDTDAIMRS
                     VSEVVRIVSGIGGGGRRTFSTGVSRPIDTVAALPQAYEEALSAVSVGRQLNGDSSVTH
                     FDGLGIFRLLALIPDSADLRRFVDEALGDLASDAVAENADLRRTLSILIDTNMNVAET
                     ARLLFFHYNTLRYRIVKLEKMLGPFTSDPQLRLKLALALKVHQMRGI"
     gene            2344..3807
                     /locus_tag="VGN19_12140"
     CDS             2344..3807
                     /locus_tag="VGN19_12140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="solute carrier family 23 protein"
                     /protein_id="HEV7196683.1"
                     /translation="MGVGLGWKLHGDGRTMGPYDVVAPDERLSWGKTIGLGAQHVVAM
                     FGATFVFPLIMGLNAQLAIMMSGIATMCFLLIVQGKVPSYLGTSASFVGGVAAIRAQP
                     GATSARVTGAILVAGLVLAAVGVLIHFLGSGVLHKVLPPVVTGAVVMLIGFNLAPVVA
                     NIYWPQDQWIALLVMVFVIVCAVAFKGFIGRIAVFLALVFGYVLSWIFDKVFGQITSF
                     NPGAGKITTHFRTSFDSIKAADWIGFPPHTQIVAGKEIVGWHAPSFSVAAILLVLPAV
                     IALIAENTGHVKAVAEMTKHDLDPVMGRAIAADGIGTVIATAVGGSPTTTYAENIGVM
                     AATRVYSTAAYYVAAIVAILFGLSPKFGALVASTPGGVLGGITVVLYGMIGLLGAKIW
                     KENGVDFGNPINLVPVAAGIVIGIGNVSLKFNDSFSLTGIALGTIVAVAAYHLAKALA
                     PADLRARAEGTVITVGGHETYGDSDGVDDLYQDDTKR"
     gene            3888..4790
                     /locus_tag="VGN19_12145"
     CDS             3888..4790
                     /locus_tag="VGN19_12145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEV7196684.1"
                     /translation="MKPSPFVYHAPRSVEEATTVLAEVGHDGKVLAGGQSLIPILNMR
                     LAAPGHLVDINQVHGLSDVSLTDDAVRVGALVRHAQLEHHDGAYAALPLLRQALKHVA
                     HPVIRNRGTTVGSIAHADAAGEMPAVLALADGVVEAVSASGSRQIASADFFLGALETS
                     LGEDELVVAVRFARFAPGTGTSFLERARRHGDYAMAGVAAAVQVRDGVVADARLSFVS
                     VTDVPRVIDVSAHFAGQEAGAVDWAAAADTIREGIEPEGDIHATAEYRAMLAVELARL
                     ALAEAATRSVAGQAGSAVEKGPAA"
     gene            4787..5299
                     /locus_tag="VGN19_12150"
     CDS             4787..5299
                     /locus_tag="VGN19_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEV7196685.1"
                     /translation="MSEPTTEELLDLTLTVNGVPRHAQAPARRLLSDFLRHDLGLTGT
                     HVGCEHGVCGACTVLVDGQPMRSCLMFAVTAQAHAITTVEGLGTIEAMGPVQRAFGEC
                     HGLQCGFCTPGFLTTITAYLDENPDPTEQEAREAISGNLCRCTGYQNIVKSVLRAAEI
                     RRELAPGSRS"
     gene            5296..>5575
                     /locus_tag="VGN19_12155"
     CDS             5296..>5575
                     /locus_tag="VGN19_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEV7196686.1"
                     /translation="MTTKMFGAPIRRKEDPRLLTGGGRYLDDLGRGALAAAFVRSPHA
                     HARIIDIDVTEALEVDGLVAVYTHEDLPGRVGEPLPLLIPHPALTHGRT"
BASE COUNT          844 a         1957 c         1904 g          870 t
ORIGIN      
        1 accatggcgg ccacagcacc ggacagcccg tcaccggctc gcagccgctc ggtgagcagt
       61 cgcgccgggt cgctccaggg caacggtgtc cgcaccgcgg cggtgtcggg tgcgcagcca
      121 tcgccagccg tgggcacccg aaccgggcgc caggtgcgga ccgcccgcac gacgacgccg
      181 ggcaggcgga tctcgccgcc accgacgagg acctcctcgc cgggctgaac gccccagccc
      241 accacctgcg tcggcacggt caccgcggtc ggcagtctca gacccgggtg agcgacgagc
      301 ggcaggacgt cgcggccctg gtccagctcg aggtagagcg ccgtgcggaa ggcgccgaga
      361 accacggcgg gtcggggtgg ccgagcgagg cgatgggccg agcgctcgga tacggccgcc
      421 ggccagacgg tcgcggctgc tgccaccagg gtctccaccc cgcgacggta tcgagtgcgg
      481 ttacagtcac ctcatggtga atgttgccaa ggatcaaggc ttggttgatg cggagttgcc
      541 atcagagggc acggtgcacg agctcgtggg cggcatcacc ctcgacgggc tgctcgcgct
      601 gccctcgctc gccggcgcgg cactgccgca cgactcggcc cagctgcatc gcacggtcgt
      661 ccgggcgtcc ctgctgggca gcgccgcagc acctcgccag cacctcgtct gcacggacgc
      721 cgcggccatg gagtcgtggg aggccgccgg gcgccagccc atcctggaga gcgcgcgcaa
      781 cggtgcaacc gcgttggccg tcgcgggcgg acgccccgac cagctggccc ggtggcgcga
      841 gcaggcacga gaggccgggc tgccggtggt gctcgtcccc gcgaccgacc gcgccgagcg
      901 gatcgtcacc gaggtgctcg aggccgtgct cgaccagcag tccgggatcc tcgaacgtgt
      961 cgaggaggca caccagatcc tggtcgacgt ggtgctggcc ggtggtggcc tcgaggacct
     1021 gtgccagggg ctggcggagt tcctcggggg cgtggcgatg gtcaccagta gcgatggtcg
     1081 ggtgttggcc caggcgggtt ctgagcaggc gctcgccacg gcatcggcgc tcagctgctt
     1141 cgacaagacc ggtcgcctga tcaccgaacg ggaacccgtc gggatcagac agtcccagag
     1201 cgccaacgcc cagcgcgcca tggtgcgcat cgccgcgggc cagaccaacc acggtctgct
     1261 ggccctgttc gtcgaggacc gccgcctgac tgctgacgac gtccacctgc tcgaacgggc
     1321 ggccaccgtg gctgccctgg cgatcaccaa ggaccaggcc gtctccgccg tcgagagcaa
     1381 gtaccgcgcg gagttcctgc gcgacgcatt gtccggacgg gccggcccgc cccccgaagc
     1441 ggttgcccac gcccgggcgc tggggtggaa catcgaccgg cgcctggtgg tggtggtcgc
     1501 cgagaccgac gaggacgacc tccacacgac gcggcccccc gaggaggtca gcgcgctcca
     1561 gcagcgcttc gcacgggcgt ggagccagac gatgggggtc cgcgacgcca cggctccggt
     1621 agtgggcttc agccaggagg tcgtggcgct ggtcgcggtg ccccaaggat cggacaccga
     1681 cgccatcatg cgcagtgtca gcgaggtggt gcggatcgtc agcggcatcg gcgggggtgg
     1741 gcgccggacc ttctcgaccg gtgtctctcg tccgatcgac acggtggcgg ccctccccca
     1801 ggcctacgag gaggcgctca gcgccgtgag cgtgggccgg cagctgaacg gcgactcctc
     1861 ggtgacccac ttcgacgggc tcgggatctt tcgcctgttg gcgctgatcc ccgacagcgc
     1921 ggacctgcgc cgttttgtcg acgaggcact gggcgacctc gccagcgacg ccgtcgccga
     1981 gaacgcggac ctgcgccgaa cgctgtccat cctcatcgac acgaacatga acgtcgcgga
     2041 gaccgcccgg ctgctgttct tccactacaa cacgctccgg taccggatcg tgaagctgga
     2101 gaagatgctc ggaccgttca cgtccgaccc gcagctgagg ctcaagctgg cgctcgctct
     2161 caaggtgcac caaatgcgcg ggatctgaac gctgggagag cacagtctgc cgaaacccat
     2221 gcggaggcgg atatcaacta ttgcccaatg aatgggccac tggtgccgct agttttcggc
     2281 tatcccgcaa gggagcgtga gcctcgtcat accagttgac gcggcggtga ataaggagtc
     2341 ggcatgggtg tgggtttggg ttggaaactg cacggcgacg gccgcacgat ggggccgtat
     2401 gacgtcgttg cacccgatga gcgtctctcc tggggcaaga ccatcggcct aggggctcag
     2461 cacgtcgtcg cgatgttcgg agcgaccttc gtctttcccc tgatcatggg cctcaacgcc
     2521 cagctcgcga tcatgatgag cgggatcgcg acgatgtgct tcctgctcat cgtccagggc
     2581 aaggtgccga gctatctcgg cacctctgcg tcgttcgtcg gcggggtggc cgcgatccgc
     2641 gcccagcccg gcgccacctc ggcccgggtc accggggcga tcctcgtcgc gggtctcgtc
     2701 ctggctgcgg tgggtgtcct catccacttc ctcggctcgg gcgtactcca caaggtgctg
     2761 cccccggtgg tgaccggcgc cgtggtcatg ctcatcgggt tcaacctcgc ccccgtcgtc
     2821 gccaacatct actggcctca ggaccagtgg atcgcgctgc tcgtcatggt cttcgtcatc
     2881 gtctgtgccg tggcgttcaa gggcttcatc ggccgcatcg cggttttcct cgcgctggtg
     2941 ttcggctatg tcctgtcgtg gatcttcgac aaggtcttcg gtcagatcac gtcgttcaac
     3001 cccggcgcag gcaagatcac gactcacttc cgcacgagct tcgacagcat caaggcagcc
     3061 gactggatcg gcttcccgcc gcacacccag atcgttgccg gcaaggagat cgtcggctgg
     3121 cacgcaccga gcttctcggt cgccgcgatc ctgctggtgc tgccagcggt catcgccctg
     3181 atcgcggaga acaccggtca cgtcaaggcg gtcgccgaga tgaccaagca cgacctcgac
     3241 ccggtcatgg gccgggccat cgctgcggac ggcatcggca cggtgatcgc cacagcggtc
     3301 ggcggctccc ccacgaccac gtatgccgag aacatcggcg tcatggcggc cacccgcgtc
     3361 tactcgacgg ctgcctacta cgtcgcggcg atcgtggcga tcttgttcgg cctctcgccc
     3421 aagttcggcg cgctcgtggc gtcgacgcca ggtggggtgc tcggcgggat caccgtggtc
     3481 ctctacggca tgatcggcct gctcggcgcc aagatctgga aagagaacgg cgtcgacttc
     3541 ggcaacccga tcaacctggt tcccgtggct gcggggatcg tgatcggcat cggcaacgtc
     3601 tcgttgaagt tcaacgacag tttctcgctc accggtatcg cgctcggcac gatcgtggcg
     3661 gtcgcggcat accacctcgc caaggcgctc gcgccagccg accttcgggc tcgggccgag
     3721 ggcacggtga tcaccgtcgg tgggcatgag acctatggcg acagcgacgg agtggacgac
     3781 ctctaccagg acgacaccaa gcgctgaacc ctcgtggtgg gcccccgatg agcagtcggg
     3841 ggcccacacc cgtttccccc atccctccga gaaggcagga tcagtctgtg aagccctcac
     3901 ccttcgtgta ccacgcgcca cgatccgtcg aggaggccac cacggtgctc gccgaagtgg
     3961 gacacgacgg caaggtgctc gcaggcgggc agagcctgat cccgatcctc aacatgcgct
     4021 tggccgctcc gggtcacctc gtcgacatca accaggtcca cgggctgtcg gacgtgagcc
     4081 tgaccgacga tgcggtgcgc gttggcgcgc tggtgcggca tgcccagctc gagcaccacg
     4141 acggcgcgta tgccgcgctg ccgctgctgc gccaggccct taagcacgtg gcccacccgg
     4201 tgatccggaa ccggggcacg accgtgggct cgatcgcgca cgcggacgcc gccggcgaga
     4261 tgcccgcggt gctggccctg gccgacgggg tcgtcgaggc ggtctcggcc tccggctcgc
     4321 ggcagatcgc ttcggccgat ttcttcctcg gagcactcga gacctccctg ggggaggacg
     4381 agctcgtcgt ggcagtgcgc tttgcccgct tcgcgcccgg gaccggcacc tcgttcctcg
     4441 agcgcgctcg ccgacacggg gactacgcca tggcgggcgt cgcggcagcc gtccaggtcc
     4501 gtgacggggt ggtggcggat gcccgcctgt cgttcgtctc ggtgaccgac gtgccccgtg
     4561 tcatcgacgt ttccgcacac ttcgccggcc aggaggctgg cgccgtcgac tgggccgccg
     4621 ccgcggacac gatccgcgag ggcatcgagc cagagggcga catccatgcc actgctgagt
     4681 accgcgccat gctcgccgtc gagctggccc ggcttgccct ggccgaagcg gccaccagat
     4741 ccgttgccgg acaagccggc tctgccgtag agaaaggtcc cgccgcatga gcgagccgac
     4801 caccgaggag ctgctggacc tcaccctcac cgtcaacggc gtgccccggc acgcccaggc
     4861 gcccgcgcgg cggctgttgt cagacttcct ccgccacgac ctcgggctca ccggcacgca
     4921 cgtcgggtgc gagcacggag tctgcggggc ctgcacggtg ctcgtcgacg gtcagccgat
     4981 gcggtcctgc ctgatgttcg ccgtgacggc ccaggcccat gcgatcacca cggtggaggg
     5041 tctggggacc atcgaggcga tgggacctgt gcagcgggcg ttcggcgagt gccacggact
     5101 gcagtgcggc ttctgcacgc ccgggttcct gacgaccatc acggcctacc tggacgagaa
     5161 cccggacccg acggagcagg aggcgcggga agccatctcc ggcaacctct gccggtgcac
     5221 cggctaccag aacatcgtga agtccgtgct ccgggcggct gagattcgcc gcgaactggc
     5281 gcctgggagc cggtcatgac cacgaagatg ttcggcgccc cgatccgacg taaggaggac
     5341 cctcgactgc tcaccggggg cggccgctac ctcgacgacc tcggccgcgg cgcgctcgcg
     5401 gccgccttcg tgcgcagccc ccatgcccat gcccgcatca tcgacatcga tgtcaccgaa
     5461 gcgctcgagg tggacggact cgtcgccgtc tacacgcacg aggacctccc tggccgcgtc
     5521 ggtgaaccgt tgcccctgtt gattccccac cccgcgctca cccacgggcg cacgg
//
LOCUS       DASYFY010000594         2160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_569191, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000594 DASYFY010000000
VERSION     DASYFY010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569191"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2160
                     /locus_tag="VGN19_12160"
     CDS             <1..>2160
                     /locus_tag="VGN19_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020012974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-transporting P-type ATPase"
                     /protein_id="HEV7196687.1"
                     /translation="LREAEPFDTHGPILQARDLLFTGTSCTEGEATAVVFNTGMHTEL
                     GRIAALSQQVGHEDSPLEKQVKHVARLIALVAVGMGVAFIPIGTLVAGLSLGDAVNFA
                     IGLLVANVPEGLLPTITLALAMGVRILARRGVLVKRISAVETLGSTSVICTDKTGTIT
                     LNRMRVTRVWTFEGVIDPSAARGADRAPSAARRLSRAVVPCNNAELDPDRPDEGHGDP
                     TELALLHMAESLGVNSRVGSTGWRSERLGQFHFDPALRRMSTVDRDADGVQVHTKGAP
                     EELVALCTRVVGPDGEAHPLGEAERDAFDRLVTEWAEAGLRLLAVAERDVDERELPDL
                     TRERAERDLTLLGLAAMIDPPRPAVPGAVARCHSAGIRLIVVTGDHGLTAQGIAESVG
                     IGRTGLRVITGAELERMPEAELDERLASGEELIFARSSPEDKMRIADALQEQGHVVAM
                     TGDGVNDAPALRRADIGVAMGRSGTDVAREAATMVLTDDNFASIVAAVEAGRRVYDNV
                     RKFIVYIFAHATPEVVPFLVYALSGGRIPLPLTVMQILAIDLGTETLPALALGRERAE
                     PGLMARPPRERTQNVIDVPMLGRAWGLLGGVSALLVMLVFLVTLLEGGWRLGDDVGSD
                     PLHHVWQQATTMSFLGIVACQIGTAMAARTQHASLREVGIWTNRLLLWGIAYEVVFAA
                     VLVTVGPLQTVFGTATPEPWQVLFVLPFPVVVWGVDEL"
BASE COUNT          316 a          766 c          754 g          324 t
ORIGIN      
        1 ctgcgcgagg ccgaaccgtt cgacacccac ggaccgatcc tgcaggcccg cgacctgctc
       61 ttcaccggta ccagctgcac cgagggtgaa gccactgccg tcgtcttcaa cacgggcatg
      121 cacaccgagc tcgggagaat cgccgccttg tcgcagcagg tgggccacga ggacagccca
      181 ctggagaagc aggtcaagca cgtcgctcgg ctgatcgccc tcgtggcggt cggtatgggt
      241 gtcgccttca tcccgatcgg gaccctggtc gccggcctgt cgctgggcga cgccgtgaac
      301 ttcgcgatcg ggctcctggt ggccaacgtg cccgaagggc tgctgcccac gatcacgctc
      361 gccctcgcga tgggtgtccg catcctcgcc cgcaggggcg tcctggtgaa gcggatctcg
      421 gcggtggaga ccctcgggtc gaccagcgtc atctgtaccg acaagaccgg caccatcacg
      481 ctgaaccgga tgcgggtgac ccgggtctgg acgttcgagg gggtcatcga ccccagtgcg
      541 gcccggggcg ccgaccgtgc gccctcggca gcgcgtcggc tgtcgcgagc tgtcgtcccc
      601 tgcaacaacg cggagctgga cccggaccgg cccgacgagg gacacggcga ccccaccgag
      661 ctggccctgc tgcacatggc cgaatcgctg ggcgtcaact cccgcgtcgg ctccacgggc
      721 tggcgcagcg agcggctcgg gcagttccat ttcgatcccg cgctccggcg gatgtcgacg
      781 gtggaccgcg acgccgacgg ggtgcaggtg cacaccaagg gcgcaccgga ggagctggtg
      841 gcgctgtgca cccgcgtggt cggccccgac ggtgaagcgc atcccctggg cgaggccgaa
      901 cgcgacgcct tcgaccggtt ggtcaccgag tgggccgagg cggggttgcg cctgctggcc
      961 gtggccgagc gcgacgtcga cgagcgggag ctgccggacc tgactcgcga gcgggccgaa
     1021 cgcgacctca ccctgctggg gctcgccgcc atgatcgacc caccgcgacc agcggtgccc
     1081 ggggcggtcg cccgctgcca ctcggccggg atccggctca tcgtcgtcac cggcgaccac
     1141 ggcctgaccg cccaaggcat cgcggagtcg gtcggcatcg gccgcacggg cctacgagtc
     1201 atcacgggtg ccgagctcga gcggatgccg gaggcagaac tcgacgaacg gctcgcgtcc
     1261 ggggaggagc tgatcttcgc gcgcagctcc cccgaggaca agatgcgcat cgccgacgca
     1321 ctgcaggagc agggacacgt cgtcgccatg accggcgacg gcgtcaatga cgcaccggcc
     1381 ctgaggcgag ccgacatcgg cgtggccatg ggccggtcag gcaccgacgt ggcccgggaa
     1441 gcagccacca tggtgctcac cgacgacaac ttcgcctcca tcgtggccgc cgtcgaggca
     1501 gggcggcggg tctacgacaa cgtccgcaag ttcatcgtct acatcttcgc ccacgcgacc
     1561 ccggaggtcg tcccgttcct ggtctatgcc ctgtcggggg gccggatccc cttgccgctg
     1621 acggtcatgc agatcctcgc gatcgacctc ggcaccgaaa ccctgccggc cctggcgctg
     1681 gggcgcgagc gcgcggagcc cgggttgatg gcgcgcccac ccagagaacg cacccagaac
     1741 gtcatcgacg tccccatgtt gggccgggcc tgggggctgt tgggtggtgt ctccgccctg
     1801 ctcgtcatgc tggtcttcct cgtcacgctc ctggagggcg gctggcgcct gggggacgac
     1861 gtgggctcgg acccgctcca ccatgtctgg cagcaggcca ccacgatgag cttcctcggc
     1921 atcgtggcct gtcagatcgg gaccgccatg gccgcacgca cccaacacgc atcgctgcgc
     1981 gaggtgggga tctggaccaa ccggttgctg ctgtggggga tcgcctacga ggtcgtcttc
     2041 gctgcagtgc tggtgaccgt gggaccgctg cagacggtct tcgggaccgc cacccccgaa
     2101 ccgtggcagg tgttgttcgt cctccccttc cccgtcgtgg tctggggagt cgacgagctc
//
LOCUS       DASYFY010000595         9901 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1620712, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000595 DASYFY010000000
VERSION     DASYFY010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9901
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620712"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1108)
                     /locus_tag="VGN19_12165"
     CDS             complement(<1..1108)
                     /locus_tag="VGN19_12165"
                     /inference="COORDINATES: protein motif:HMM:NF012447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid ammonia-lyase"
                     /protein_id="HEV7196688.1"
                     /translation="MREPVTLDGAHLDLDGLARAANGARVVVDAAALERATASHRNAA
                     AVSATRPVYGRTTGVGAARDETTSSTVDHGLRLLRSHAAGWGEAIPERVVRAALAVRS
                     NQLLAGGSGASPHVAVALAELASAPAGDLPVVHRYGSLGTGDLTALAEVGLTLIGERA
                     RAGGTARAEIDLTSADALPLMSSNAFAIAETGLHAATLHALARAADTVCALSFVALQG
                     NPEAVSEIAAAATPFRGAQEVARVLRELLADQPGEPAHIQDFFGLRTWPQVHGPVLDT
                     VTDLKSVVEATANTASENPLFGDGHDGDSGPTATHHGGFHAAYLVLAVDTALLALTRS
                     AQAVQSRVSHTLTDADSGLPRFLSDATPGSSGVLI"
     gene            1184..2320
                     /locus_tag="VGN19_12170"
     CDS             1184..2320
                     /locus_tag="VGN19_12170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7196689.1"
                     /translation="MIAFDRVTKRYPDGTVAVDNLTFEAPSGKITVLVGPSGCGKTTS
                     LRMINRMIKATSGTITLDGRDTARMKESELRRGIGYVIQHAGLFPHRTVVDNVGTVPR
                     LLGWDKAKVHSRSMELLERVGLDPAFAKRYPAQLSGGQQQRVGVARALAADPPVMLMD
                     EPFSAVDPVVREQLQDEFLRLQGDLGKTIIFVTHDIDEAIKLGDEVAVLRVGGRLAQL
                     AEPAYLLAHPVDDFVADFVGRDRGYRALSFQPTPRLPLAAERTVALGEGVDSIPEAWV
                     LVVDENNHPLGWVEPQRVRGEISSEMLHRGGTVARANGPLRAALDAALSSPSRRGVIV
                     DDSGALVGTVRAHEVLTAIEQTDRPELADPAAPGATGETGAAAS"
     gene            2317..2964
                     /locus_tag="VGN19_12175"
     CDS             2317..2964
                     /locus_tag="VGN19_12175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196690.1"
                     /translation="MTWFLDHLDDVWTRTEQHVYLAGLPLILGLLIALPLGWLARRYP
                     VLYAPFTAGFGLLYTIPSLALFVLLPPIIHRQILDPVNVVVAMTLYTVALLVRTVADG
                     LGAVPEHVQQAASAMGYGRIKRFFAVELPLAIPVISAGLRVAAVSNVSIVSVAAIIGI
                     PQLGLFFTDGFARDFYDPLVVGIIACVALALVFDIVIIAITRLLTPWLRVAGARP"
     gene            2961..3740
                     /locus_tag="VGN19_12180"
     CDS             2961..3740
                     /locus_tag="VGN19_12180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196691.1"
                     /translation="MIGTILAWLTDASHWSGDDGIPHRLWEHLWYSALALGIGAVIAI
                     PIGLAIGHTGRGRFFVVNLAGAARAIPSLGLLYLMVLWLFPKLSGDSAFLIPSLIVLI
                     VLAIPPMMSGAYAGVGEVDPDARDAAKGMGMTGLEVLRKVEVPCALPLVFSGVRSAAL
                     QVVATTTIAAVAGLGGLGRFLIDGQKVRDFPQMASGAVLIALLALAVDLVFALVQRYV
                     VSPGLTGRGQASDRSRGQRRGNTHNDVVIDSTTRTVETTVG"
     gene            3782..4705
                     /locus_tag="VGN19_12185"
     CDS             3782..4705
                     /locus_tag="VGN19_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEV7196692.1"
                     /translation="MPKIAVTVTTAAALMTMAACGSSGNNPLSTGSSSSSSGGSSNGI
                     TVGSADFPESALLAEIYAGALEAKGIKVTKKLNIGAREAYIPALQDGSIDLIPEYTGV
                     LTQYFNKKASAKDANGVYAELKASLPATLTVLDKSAAEDKDALVMKKSRADQLGVKSI
                     ADLAGKASQLTVGGPPEWKTRLTGIPGFKQIYGLTFKEFRPLDAGGPLTLNALKSGQI
                     DAGDLFTTDPNITANDLVALADPKSMYAAQNVVPLITKSKDAPTIDAALNAVSAKLDT
                     PTLLSLVKEVVIDHKDASAVAKEFLTKNSLG"
     gene            4934..7366
                     /locus_tag="VGN19_12190"
     CDS             4934..7366
                     /locus_tag="VGN19_12190"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEV7196693.1"
                     /translation="MLTPCFGREDVLARLQVLVGRSRWVTLTGPPGCGKTLVARHAAS
                     TAGRHVWVPAHGNVGTEGLLARCLDALGADVAPGDSAVQALKRALDEQDLLLVLDGVD
                     DIDGLGALLDDLVEETSAFTLLCTATSVAGKPQESVLRLRPLPIPCLSQPLEGPLVEL
                     LLARVSGAGGPSVDLAEHDLMLRRLLTSSGGLPSLVEQLAVQIALVGVRDVAPVGTLA
                     AAVRGSYELLDDEQRRCFRRLAVVGCPVSLEVLTDVWRVSRPRAVEVATALARRNLVE
                     VMPDGRFDMLPPLRELGQGLAAESGDDDATYAGLLAWAERVVPKDVNSGAADEPWLAE
                     LALVRTAVVRACQTDAGRAHGYALANRAFSSLYTAMRTRDALDLLRAVLDSGDGPPSI
                     GPQLARRAGICASEVRGTYEGLRLLERAETHALALGSTQRDLELARNSAIRAEMHLDA
                     GNLDAAQADVERTLALGQGDPYVVRQVRRTLMDVYVSRGELSEARRLAVAILDSPPAD
                     EMWIALSARTLQAKIAWEQGRKVESASLAAYARDQAQSLHEDRIALLADILHRQVTGQ
                     GGPVVESESLPWAVRLVVQLQEARELLARGEAARAAGRAADIVVLADSSTLGRDAVEA
                     RLLAGDALMAMGEPAQAQAAYLEALRRAADIPMPLRAADALDGLAGVLMLLGSPSHRQ
                     LAAAAAALRVSRRALAHLRPGLVAPVGVVRDTPNGWLEAGQFSQAGVTAVTALCAEPE
                     ASDLVGNPLGSLTRAELRVAQLVAEGHTSRQIAEQLFVSPRTVDAHLTHIFRKLDIGS
                     RAKLAALMAEIA"
     gene            7420..8166
                     /locus_tag="VGN19_12195"
     CDS             7420..8166
                     /locus_tag="VGN19_12195"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEV7196694.1"
                     /translation="MTDLPYRVVIGGCRALLRLLGLRVEVHGAERLPRRGAAILAANH
                     HSFVDFMLVGLVGRMRGRFVRFLAKQVVFELPGVGAAMRAMGHLAVDRAHGEVAARRT
                     LRALGDGQVVGIYPEATIGRAFTVRDRRYWRRGAAYLALATGAPLVPVAHFGAHRVAT
                     VGGRFSLRRGTAITVLVGEPLVPQEGETAEELTTRLRERIAAMVEELTATYPQPPRVP
                     RATWWWPAHRGGGAPEGETVGALEESAART"
     gene            complement(8163..>9901)
                     /locus_tag="VGN19_12200"
     CDS             complement(8163..>9901)
                     /locus_tag="VGN19_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEV7196695.1"
                     /translation="GWIGSFFTGFSTDTVKNLIVVVAAVKILISFAWMITISLQPTMG
                     VAWHRFLAFFNIFLKRHADGRTSLGALQPMLVGGEPVDFENIEELDEDSALGVGKVED
                     FTWKGLLDFTTCTECGRCQSQCPAWNTDKPLSPKLLVMALRDHAHAKAPWLLAAEDAR
                     GELPESASALADVPLIGETGYANGEFPSPLAAYNPHGPDAVIDLDVLWSCTTCGACVE
                     QCPVDIEHVDAIVDMRRYQTLIESAFPNELGGLFKNLENKGNPWGMAARARLDWAKDL
                     PFEVKILGQQVESADDVDYLFWVGCAGAYEDRAKKTTRAVAELLDQAGVSFAILGDGE
                     TCTGDSARRAGNEFLFQMLAQQNVETLNEAGATKIVVTCAHCFNTIKNEYPQLGGKYE
                     VVHHTQLLNRLVREKKLVPVARPGDAPGKSTAKNVASTAETVTYHDPCYLGRHNDVYA
                     PPRELIGALPGVELKEMERTKEKSFCCGAGGARMWMEEKLGTRINTNRTEEALGTGAE
                     RIAIGCPFCRVMISDGLTAKQSEGIGEQVEVVDVAQMLLAAVKRRDDGQPAEPEVSEP
                     TPDPEPEPAPVG"
BASE COUNT         1459 a         3443 c         3417 g         1582 t
ORIGIN      
        1 cgatgagcac ccccgaagac cccggcgtgg catcggagag aaaccgcggc agcccgctgt
       61 cggcgtcggt cagcgtgtgg ctcactcggg actgcaccgc ctgcgccgaa cgggtcaacg
      121 ccagcagggc cgtgtccaca gcaagcacca ggtatgccgc gtggaacccc ccatggtgag
      181 ttgccgtagg gccgctgtcg ccatcgtggc cgtcgccgaa caaggggttc tccgacgccg
      241 tgttcgccgt cgcctccacg actgacttga ggtcggtcac cgtgtcgagc acgggaccat
      301 gcacctgcgg ccaggtgcgc aggccgaaga agtcctggat gtgggcgggc tcgccaggct
      361 ggtcggcgag cagctctcgc aagacgcggg cgacctcctg agcaccacgg aacggagtcg
      421 cggcggccgc gatctcactc actgcctcgg gattaccttg cagcgcaacg aaactcaggg
      481 cacacacggt gtcggccgcg cgggccagcg cgtgcaaggt cgcggcatgg agcccggtct
      541 ccgcgatcgc gaaggcgttg gacgacatca acggcaacgc gtcggccgag gtgaggtcga
      601 tttccgcccg tgccgtgccg cccgcgcgtg ctcgctcccc gatcaaggtg agccccacct
      661 cggcgagcgc cgtcaggtcc ccggtgccca gcgagccgta gcggtgcacc actggcaggt
      721 ctccggccgg cgcactcgcc agctcggcga gcgccaccgc cacgtgtggg ctggcgccgg
      781 acccgcccgc gagcagctgg ttcgagcgaa cggccaacgc agcgcgcacg acacgctcgg
      841 ggatcgcttc gccccacccc gcggcatgcg agcggagtag tcgcagtccg tggtccaccg
      901 tcgaggacgt ggtctcgtcg cgggccgcac cgactccggt ggttcggcca tagaccggtc
      961 gcgtggcgct gacggccgcc gcattccggt gcgatgcggt cgctcgctcc aacgcggcgg
     1021 catcgacgac gacccgcgct ccgttggccg ctcgggccag tccgtcgagg tcgaggtggg
     1081 ctccgtcgag ggtcacaggt tcgcgcacgt gctccagtat cgggtcagaa ccgtgacgtg
     1141 aggtcggagg cgcctgtctg cgtgctgagt taggttgagg cccatgatcg cgttcgacag
     1201 ggtgaccaag cggtatccgg atggcaccgt cgccgtcgac aacctgacct tcgaagcccc
     1261 cagcggcaag atcaccgtcc tggtggggcc gtctggctgt ggcaagacga cgagcctgcg
     1321 gatgatcaac cgcatgatca aggcgacctc ggggacgatc accctcgacg gccgggacac
     1381 cgcccggatg aaggagtcgg agctgcgccg cggcatcggt tatgtcatcc agcacgccgg
     1441 gctgtttccc catcgcaccg tcgtcgacaa cgtgggcacc gtcccgcgac tgctcggctg
     1501 ggacaaggca aaggtccatt cccgctcgat ggagctgctc gagcgggtcg gtctggaccc
     1561 agcgttcgcc aagcgatacc ccgctcagct ctcaggcggc cagcagcaac gggttggagt
     1621 ggcccgagcc ctggcggccg acccaccggt catgctgatg gacgaaccct tcagcgcggt
     1681 cgacccggtg gtgcgcgagc agctgcagga cgagttcctg cgcctgcagg gtgatctggg
     1741 caagacgatc atcttcgtca cacacgacat cgacgaggcg atcaagctgg gtgacgaggt
     1801 ggcggtcctg cgtgtgggtg gccgactcgc gcagctggcc gagccggcct acctgctggc
     1861 gcatccggtg gacgacttcg tcgccgactt tgtcgggcgc gaccgcggct accgcgcgct
     1921 gtccttccag cccacgcccc gcctgccgct cgctgctgag cgaacggtcg ccctcggcga
     1981 gggcgtggac tccatacccg aggcctgggt gctggtcgtc gacgagaaca accacccgct
     2041 cggctgggtc gagccgcagc gggtccgcgg tgagatcagc agcgagatgc tgcatcgcgg
     2101 gggcaccgtt gcccgtgcca acggacccct gcgtgccgcg ctcgacgccg cgctctccag
     2161 cccgagtcgg cgcggggtca tcgtggacga ctccggcgcc ctggtcggca ccgtacgggc
     2221 ccacgaggtc ctgacggcga tcgagcagac cgaccggccc gagctggccg accccgccgc
     2281 cccgggggca acgggggaga caggagcggc cgcgtcatga cgtggttcct cgaccacctc
     2341 gacgatgtgt ggacgcggac cgagcaacac gtctatctcg ctggcctccc actcatcctc
     2401 gggctcctga tcgccttgcc gctggggtgg ctcgcgcgcc ggtacccggt gctctacgcc
     2461 cccttcaccg cgggcttcgg actgctgtac acgatcccca gcctggccct gttcgtactt
     2521 ttgccgccga tcatccaccg ccagatcctc gaccccgtca acgtcgtcgt cgcgatgacc
     2581 ctctacacgg tcgccctgct ggtgcgcacc gtcgctgacg gactaggtgc ggtccccgag
     2641 cacgtccaac aggccgcgag cgcgatgggc tatgggcgca tcaagcggtt cttcgcggtg
     2701 gagctgccgc tggccatccc ggtcatctcg gccggactcc gggtcgcggc agtcagcaac
     2761 gtcagcatcg tcagcgtcgc cgccatcatc ggcatacctc agctggggct cttcttcacc
     2821 gacggctttg cccgcgactt ctacgacccg ctggtggtcg gcatcatcgc ctgcgtcgcc
     2881 ctggccctcg tcttcgacat cgtgatcatc gccatcaccc gtttgctcac accgtggctc
     2941 cgagtggcgg gagcccgccc atgatcggca cgatcctcgc ctggctgacc gacgcctccc
     3001 actggtccgg ggacgacggc ataccgcacc gtctgtggga acacctgtgg tattcggcgc
     3061 tggccctcgg catcggggcc gtcatcgcga ttcccatcgg tctggccatc gggcacaccg
     3121 gtcgcggacg cttcttcgtc gtgaacctgg ccggcgctgc tcgcgcgatc cccagcctcg
     3181 gcctgctcta cctcatggtc ctgtggctct ttccgaagct ttctggcgac tccgccttcc
     3241 tcatccccag cctgatcgtc ctgatcgtgc tggcgatccc gccgatgatg agcggtgcgt
     3301 atgccggggt cggcgaggtc gaccccgatg cccgggatgc agccaagggc atgggcatga
     3361 ccggcctgga ggtcctgcgc aaggtggagg ttccctgtgc cctcccgctg gtcttctcgg
     3421 gggtgcggtc tgcagccctg caggtcgtgg ccacgaccac gatcgccgcg gtcgccggcc
     3481 tcggaggcct cggtcggttc ctgatcgacg gccagaaggt ccgtgacttc ccacagatgg
     3541 cctctggcgc ggtcctgatc gcgctactcg ccctggcggt cgacctcgtg ttcgcactcg
     3601 ttcagcgata cgtcgtgtcc ccgggactga cgggtcgcgg tcaggccagc gatcggagcc
     3661 ggggtcagcg ccgcgggaat acccacaatg atgtagtaat tgactccact acacgtacgg
     3721 ttgaaacgac ggtcggctga cctcaccagc tggcagaaca gttagggaga aatccgtgaa
     3781 gatgccaaag atcgctgtaa ccgtcacgac ggcggcagcg ctgatgacga tggccgcctg
     3841 cggcagctcg ggcaacaacc cgctctccac tggcagcagc agcagctcca gcggtggctc
     3901 cagcaacggc atcaccgtcg ggtcggccga cttccccgag agtgccctgc ttgccgagat
     3961 ctatgccggc gcgttggagg ccaagggcat caaggtcacc aagaagctga acatcggcgc
     4021 ccgcgaggcc tacatcccgg ctctgcagga cggctcgatc gacctcattc ccgagtacac
     4081 cggtgtcctg acccagtact tcaacaagaa ggcctcggcg aaggacgcga acggggtgta
     4141 cgccgagctc aaggcctcgc tgccggccac cctcaccgtg ctggacaagt cggcggccga
     4201 ggacaaggac gccctggtca tgaagaagtc gagggccgac cagctgggcg tcaagtccat
     4261 cgccgacctc gccggcaagg ccagccagct caccgtgggt ggaccgccgg agtggaagac
     4321 tcgcctgacc ggcatccccg gcttcaagca gatctacggg ctgacgttca aggagttccg
     4381 tccgctggac gccggtggcc cgctgacgct caacgccctc aagagcggcc agatcgacgc
     4441 cggtgacctg ttcaccaccg acccgaacat cacggcgaac gacctcgtcg ccctcgcgga
     4501 ccccaagagc atgtatgccg cgcagaatgt cgtgccgctc atcaccaaga gcaaggacgc
     4561 cccgacgatc gacgcagccc tcaatgctgt ttcggccaag ctggacaccc cgaccctgct
     4621 gagcctggtc aaggaggtcg tcatcgacca caaggacgct tcggccgtgg ccaaggagtt
     4681 cctgacgaag aacagcctcg gctgacgccc ctccggacgg cacgacaagg gccgggtgcg
     4741 gtctcccccg agaaccgcac tcggcccttg tcgcggcgga cgagccgccg atcagatcca
     4801 tgccctcggt gacgcccctc cacgccgccc agtgccggac cgttgaactt gtttcgcacc
     4861 acaatgaccc agttcagagc actccgcatc cgtgaaacca ccgatatccg gcgttgctgg
     4921 atagcctgaa caggtgttga ccccctgctt cggacgcgag gacgtcctcg cgcgactgca
     4981 ggtgctggtc gggcgcagcc gctgggtcac gctcacgggc ccccctgggt gtggcaagac
     5041 gctcgtggcc cgccacgccg cgtccacggc cggtcgacac gtctgggttc ctgcccacgg
     5101 caacgtgggc accgagggcc tgctggcccg ctgcctggac gcactcggcg cggacgtggc
     5161 tcctggggac tcggcagtcc aggcgctgaa gcgcgcgctt gacgagcagg acctcctact
     5221 cgtgctggac ggggtcgacg acatcgacgg cctcggggcc ctgctcgacg acctggtcga
     5281 ggagaccagc gccttcaccc tgctgtgcac ggccacgagc gtggccggca agccgcagga
     5341 gtccgtcctg cgactgcgcc cgctgcccat cccctgcctg tcccagccgc tcgagggccc
     5401 cctggtcgag ctgctgctcg ctcgggtcag tggggccggc ggcccgagcg tcgaccttgc
     5461 cgagcacgac ctgatgctgc gtcgactgct gacctcgagc ggcggcctgc cgtcgttggt
     5521 cgaacagctc gccgtccaga tcgccctcgt cggggtgcgc gacgtggcgc ccgtcggcac
     5581 cttggccgca gccgtgcgcg ggtcgtacga gctgctcgac gacgagcaac gacgctgctt
     5641 ccgacggctg gcggtggtcg ggtgtccggt gagcctggag gtcctcaccg acgtgtggcg
     5701 ggtgtcgagg ccacgtgccg tcgaggtcgc cacggcactc gcccggcgaa acctggttga
     5761 ggtgatgccc gacgggcgtt tcgacatgct gccgccgctg cgcgagctcg gccagggcct
     5821 cgcggcagag agcggggacg acgatgcgac gtatgccggc ctgctcgcct gggcggagcg
     5881 cgtcgtcccg aaggacgtca acagtggcgc cgccgacgag ccgtggctgg cggagctggc
     5941 cctggtgcgc accgcggtcg tccgtgcctg ccagaccgac gccggccggg cacacggcta
     6001 cgccctggcg aaccgcgcct tctcctcgct gtacacggcg atgcggaccc gcgacgctct
     6061 cgacctgctc agggccgtgc tcgacagcgg agacgggccg ccgagcatcg gcccccagct
     6121 ggcccgacgg gccggcatct gcgcgtcaga ggtgcgcggc acctatgaag ggctgaggct
     6181 gctggagcgg gccgagacgc acgccctcgc cctcggatcg acgcagcgcg acctcgagct
     6241 tgcccggaac tccgccatcc gcgccgagat gcacctggac gccggaaacc tggacgccgc
     6301 ccaggcggat gtcgaacgca cgctggctct gggtcagggc gacccgtacg tcgtgcgaca
     6361 ggttcgccgg accctgatgg atgtgtacgt gtctcgtggg gagctgtccg aggcgaggcg
     6421 gctggcggtg gccatcctcg actccccgcc cgcggacgag atgtggatcg ccctgtccgc
     6481 gcgcaccctg caggccaaga tcgcgtggga gcaagggcgg aaggtcgagt ccgcgtcgct
     6541 tgccgcctac gccagggacc aggcgcagtc cctgcacgag gaccgcatcg cgctgctggc
     6601 cgacatcctc catcggcagg tcaccggcca gggtggcccg gtggtcgagt cggagtccct
     6661 gccctgggcg gtccgcctgg tcgttcagct ccaagaggcg cgcgagctgc tcgctcgcgg
     6721 tgaggcagcc cgggcggcag gtcgcgccgc tgacatcgtc gtcctcgccg acagcagcac
     6781 gctcggccgc gacgccgtcg aggcccggct gctggctggc gacgcgctca tggcgatggg
     6841 cgagcccgcc caggcgcagg cggcatacct cgaggctttg cgcagggcag cggacatccc
     6901 catgccgttg cgggcggcgg acgccctcga tgggctggcc ggggtcctca tgctgctggg
     6961 ctctccttct caccgtcagc tggccgccgc tgcggccgca ctccgggtga gccgtcgtgc
     7021 gctggctcac ctgcgacccg ggctggtggc ccccgtcggc gtggtgcggg acacccccaa
     7081 tgggtggctg gaggccgggc agttctctca ggctggggtg accgccgtga cggccctgtg
     7141 tgccgagccg gaggccagcg acctggtggg caaccccttg ggatcgctga ccagggccga
     7201 gctgcgggtc gcccagcttg tcgcggaggg ccacaccagc cgtcagatcg ccgagcagct
     7261 gttcgtgtcg ccacgcacgg tggacgccca cctcacccac atcttccgga agctggacat
     7321 cggctcgcgg gccaagctgg ccgccctgat ggccgagatc gcctgaggag gcgccaaccg
     7381 aaaggggtgt tcgctccgaa tcctggtcat gagcgactca tgaccgacct gccctaccgc
     7441 gtggtcatcg gaggatgccg agccctgttg cgcctcctcg gcctgcgcgt cgaggtgcat
     7501 ggtgcggaac gactgccccg caggggcgcg gcgatacttg ccgccaacca ccacagcttc
     7561 gtcgacttca tgctcgtggg gctggtcgga cggatgcgcg gccgattcgt gaggttcctg
     7621 gccaagcagg tggtcttcga gctgcccgga gtgggtgcgg cgatgcgcgc gatgggccac
     7681 ctcgcggtgg accgtgccca cggtgaggtg gccgcgcgtc ggacactgcg tgccttgggc
     7741 gacggccagg tcgtcggcat ctatccggag gccaccatcg gtcgcgcgtt cacagtccgg
     7801 gatcgtcggt actggcggcg gggcgccgcc tatctggccc tggctacggg tgcccccttg
     7861 gtcccggtgg cccatttcgg cgcccatcgc gtggccacgg tggggggtcg gttcagcctg
     7921 cgccggggca ccgccatcac tgtgctggtc ggcgaaccgt tggtcccgca ggagggcgag
     7981 acggcggagg agctcaccac tcggctgcgt gaacgcattg ccgccatggt cgaggagctc
     8041 accgcgacct acccccagcc gccgcgcgtg cccagggcca cctggtggtg gcctgcgcac
     8101 cgaggtgggg gtgcgccgga aggtgagacg gtgggcgctc tggaggagag cgcggcgcgt
     8161 acctagccga ccggtgcggg ctccggctca gggtccggcg tcggttcgct gacctcgggc
     8221 tcggcgggct ggccgtcgtc ccgacgcttc accgcggcga gcagcatctg ggcgacgtcg
     8281 acgacctcga cctgctcgcc gatgccctcg gactgcttgg cggtgaggcc gtcggagatc
     8341 atcacccggc agaacgggca cccgatggcg atccgctccg cgccggtgcc gagggcctcc
     8401 tcggtgcggt tggtgttgat ccgggtgccg agcttctcct ccatccacat gcgcgcacca
     8461 cccgcgccgc agcagaacga cttctccttg gtgcgttcca tctccttgag ctcgacgccg
     8521 ggcagcgcgc cgatgagctc gcgaggcggt gcgtagacgt cgttgtggcg acccaggtag
     8581 caggggtcgt ggtacgtcac ggtctcagcg gtcgaggcga cgttcttggc ggtcgacttg
     8641 ccgggcgcat ccccggggcg agccaccggc accagcttct tctcgcgcac caggcggttg
     8701 agcagctggg tgtggtggac gacctcgtac ttgccgccga gctgggggta ctcgttcttg
     8761 atggtgttga agcagtgcgc gcaggtcacc acgatcttgg tcgcgccggc ctcgttgagg
     8821 gtctcgacgt tctgctgggc gagcatctgg aagaggaact cgttgcccgc gcgacgggcg
     8881 gagtcgccag tgcaggtctc gccgtcgccc aggatcgcga aactcacccc ggcctggtcg
     8941 agcagctcgg ccacggcgcg ggtggtcttc ttcgcgcggt cctcgtaggc gccggcgcag
     9001 ccgacccaga acaggtagtc gacgtcatcc gcggactcaa cctgctgccc gaggatcttg
     9061 acctcgaacg gcaggtcctt ggcccagtcg agccgcgccc gggccgccat gccccacggg
     9121 ttgcccttgt tctccaggtt cttgaagaga ccgccgagct cgttgggaaa ggcgctctcg
     9181 atcagggtct ggtagcggcg catgtccacg atcgcgtcga cgtgctcgat gtccaccggg
     9241 cactgctcga cgcaggcacc gcaggtggtg cacgaccaga gcacgtccag gtcgatgacg
     9301 gcgtcggggc cgtgcgggtt gtaggcagcg agtggggagg ggaactcacc gttggcatag
     9361 ccggtctcgc cgatcagggg cacgtcggcg agtgcactcg ccgactcggg gagctctcct
     9421 cgggcgtcct cggcggcgag cagccacggc gccttggcat gcgcgtggtc gcgcagtgcc
     9481 atgaccagca gcttggggga cagcggcttg tcggtgttcc acgccggaca ctgagactgg
     9541 cagcggccgc actccgtgca ggtggtgaag tcgagcagcc ccttccaggt gaagtcctcg
     9601 accttgccga cgcccagcgc cgagtcctcg tcgagctctt cgatgttctc gaagtccacg
     9661 ggttcgccgc cgacgagcat cggctggagg gcgccgagcg aggtgcgccc gtcggcgtga
     9721 cgcttgagga agatgttgaa gaaggccagg aagcggtgcc aggcgacgcc catggtcggc
     9781 tgcagcgaga tggtgatcat ccaggcgaac gagatgagga tcttgaccgc cgccaccacg
     9841 acgatgaggt tcttcaccgt gtcggtggag aagccggtga agaagctgcc gatccatccg
     9901 g
//
LOCUS       DASYFY010000596         2035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_727012, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000596 DASYFY010000000
VERSION     DASYFY010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_727012"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..576)
                     /locus_tag="VGN19_12205"
                     /pseudo
     CDS             complement(1..576)
                     /locus_tag="VGN19_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018778330.1"
                     /note="Catalyzes first step of the de novo purine
                     nucleotide biosynthetic pathway; frameshifted; incomplete;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
     gene            complement(599..823)
                     /locus_tag="VGN19_12210"
     CDS             complement(599..823)
                     /locus_tag="VGN19_12210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196696.1"
                     /translation="MPQPHRYPNFPAFISTGAILGFIIGSLLGYRGGAETTYGNTYSV
                     TTAVLFIGVLGACVFGLLAAVLAVLLDRRR"
     gene            918..>2035
                     /locus_tag="VGN19_12215"
     CDS             918..>2035
                     /locus_tag="VGN19_12215"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEV7196697.1"
                     /translation="MTQSNRWSRAWPFALGGLLAAAAGMGLGHLVAAFVSPAASPVLA
                     VGSTVIDATPTPIKEWAIAHFGTHDKTVLLTSVALVTALAAAGIGLVSRRRPTIGLVL
                     VVALAGLAALAAMTRPTAQPQDLIPSLVAAVTGLAILSWLRSLLVPSRVAGTDTEAES
                     PLDHTAYATGAEATPRRRSFLLGAAGVTVGAAAAGTIGQNLAAAPTLPSSVTLPKPTN
                     VLAPLPTGIEGRIKGVSRFRTPNNDFYRVDTALVIPRVDVSSWRLTIDGNVGQPVSLT
                     FAQLLAMPMIEQDITLNCVSNEVGGPYISSTRWLGVRTRDVLALAKIKPGTEQILSES
                     VDGMTISTPIEALTDSRDAIIAVAMDGQPLPAQHGFPVR"
BASE COUNT          332 a          721 c          693 g          289 t
ORIGIN      
        1 ccgcccacac cggtggccat cttgccgatc accaggggcc ggaacccctg cgggtcacgc
       61 gccgcgtaca gcgtgttctc atccatgaag gccagcgaat acgcaccacg gaccagcggc
      121 agaatcgcca ccgccgtggg cgaagccctc ctgcgtgcgg gaggcgacga ggtcgcgcag
      181 ctcggcggag ttgatgaggt tgccgttgtg cgccagtgcc accgtcgact cggcgtgacc
      241 gccgagggtc ggctgggcgt tctcccaggt ggagccaccg gtggtggagt agcggcagtg
      301 gccgacggcg aggtgtccgc ggagggaggc gagcgaccgc tcgtcgaaga cctgggagac
      361 cagacccatg tccttgtaga ccaggatgct gcgcccgtcg gaggtcgcga tgccggccga
      421 ctcctggccg cgatgctgca gcgcgtacag cccgtagtag gtgagcttgg cgacgtcctc
      481 gccgggggcc cagaccccga agaccccgca ggcatcctgc ggacccttct caccggggag
      541 gaggtcgtgc gtcagccgtc cgtcgccgcg tgccacgggg ctaagtctcc cacaggcctc
      601 agcgacgtcg gtccagcagg accgccagca ccgcggcgag cagtccgaag acgcacgcgc
      661 cgagaacgcc gatgaacagc acagcggtgg tgacgctgta cgtgttcccg taggtcgtct
      721 cggcgccacc ccggtagccg agcaacgagc cgatgatgaa cccgaggatg gcgccggtgg
      781 aaatgaaggc gggaaagttc gggtaacggt gaggctgcgg cacgccacca cgctacggcg
      841 tcaccgcctt gtaaccgtga agggggaccc atccgcccgg ccacagagta cgaatggtga
      901 gtatgagcag aactggcgtg actcagtcga accgatggtc aagggcctgg ccgtttgccc
      961 tgggcgggct cctggccgcc gcggccggta tggggctcgg ccacctggtt gccgcgttcg
     1021 tgagccctgc ggcttcgccg gtgctcgcgg tgggctcgac cgtgatcgac gcgacgccga
     1081 cgccgatcaa ggaatgggcg atcgcgcact tcggcaccca cgacaagacg gtcctgctga
     1141 ccagcgtcgc gctcgtcacc gccctggctg cggccggcat cggcctggtc tcgcgccgcc
     1201 gaccgacgat cggcctcgtg ctcgtcgtgg ctctggcggg gctcgccgcg ctcgctgcca
     1261 tgaccaggcc caccgcccaa ccacaggacc tgatcccgtc actcgtcgcg gccgtgactg
     1321 gtctggcgat cttgagctgg ctgcgctcgc tgctggttcc gagccgcgtg gcggggactg
     1381 acaccgaggc cgagtcgccc ttggaccaca cggcatacgc gaccggcgcg gaggcgaccc
     1441 cacgccgacg cagcttcctg ctgggagccg ccggggtcac cgtcggcgcc gcggctgcgg
     1501 gcaccatcgg ccagaacctc gccgccgcac cgacactacc cagcagcgtc accctgccca
     1561 agcccacgaa cgtcctggcg ccactgccga ccggaatcga gggaaggatc aagggcgtca
     1621 gccggttccg cacaccgaac aacgacttct accgggtaga caccgccctg gtcatcccgc
     1681 gcgtcgacgt ctcgtcctgg cggctgacca tcgacggcaa cgtggggcaa ccggtctcgc
     1741 tgaccttcgc gcagctgctc gcgatgccga tgatcgaaca ggacatcacc ctcaactgcg
     1801 tcagcaacga ggtgggcggt ccgtacatca gctcgacgcg ctggctcggg gtccggacgc
     1861 gcgatgtgct ggccctggcc aagatcaagc cgggcacgga gcagatcctc agcgagtccg
     1921 tcgacggcat gaccatctcg acccccatcg aggccctcac cgacagccgg gacgcgatca
     1981 tcgccgtcgc catggacggt cagccgctgc ccgcccagca cgggttcccc gtgcg
//
LOCUS       DASYFY010000597         3095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1830835, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000597 DASYFY010000000
VERSION     DASYFY010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1830835"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VGN19_12220"
     CDS             <1..296
                     /locus_tag="VGN19_12220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196698.1"
                     /translation="AGLDVAGSEALRTDTSALTDLRHRGRSYRDVVFVVRQARTLSFQ
                     APSATIEAVVDTAAYTVVDAVGAARHAATGGGPMRFSLRWQEERWKIERVGAG"
     gene            complement(293..1189)
                     /locus_tag="VGN19_12225"
     CDS             complement(293..1189)
                     /locus_tag="VGN19_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HEV7196699.1"
                     /translation="MSQRVAISGSSGLIGGALSSFLTSRGDDVVQLVRRSPQGPNEVR
                     WDPASRRLDPEALRGIDAVVHLAGAGVGERRWTPAYQRQILASRVDGTTAIAQALAEL
                     GSGARLVSASAVGVYGDRGDDVLTEESEPGTGFLSEVVRAWEAAADPARDAGVPVVHP
                     RTGIVLAPAGGAMSRMLPLARAGINGRLGSGRQWWPWISLRDTVAGLAFLVDHREVTG
                     PVNLVGPTPSRQLDLARELGRQLHRPAVLPAPAFAIKLVLGGFSDEVLTSKRAVSTRL
                     TEAGFVHADQHLASALRHLLSG"
     gene            complement(1211..3076)
                     /gene="sucB"
                     /locus_tag="VGN19_12230"
     CDS             complement(1211..3076)
                     /gene="sucB"
                     /locus_tag="VGN19_12230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase, E2 component,
                     dihydrolipoamide succinyltransferase"
                     /protein_id="HEV7196700.1"
                     /translation="MSERVTMPALGESVTEGTVTRWLKNVGDTVAVDEPLLEVSTDKV
                     DTEIPSPVAGVLQEILAGEDDTVPVGADLAVIGDGQGSPDAGSSDAASDGSAPQTQEI
                     PAPSEQEAAPVAQAPSTDQEPQQANSEPERSDSSDGGSASGETVTMPALGESVTEGTV
                     TRWLKAEGDHVDVDEPLLEVSTDKVDTEIPSPVAGVLTKILVAEDDTVPVGAALAIVG
                     GTGGGQTPAAQQEQPASAQPAQAAQQEQPAPQQPQQAAPQPPAQQEPPAQQEPPAQQA
                     PQAAPQAPAQPQAVSSTPQAMSDDSADASAYVTPLVRKLAADNSVDLGSLKGTGIGGR
                     IRKQDVLDAAKAAVAKAAAASAPAAPSAPAAPAASTATAGAPSPSAASPKRGTTEKMS
                     RLRQTIAKRMVESLHVSAQLTTVVEVDVTKIARLRAKAKSEFERREATKLSFLPFFAL
                     ASVEALKTHPMVNASVEGDQVTYHGSENLGVAVDTERGLLVPVIKDAGDLNIAGLARK
                     IADLAERTRGNKITPDELGGGTFTLTNTGSRGALFDTPIINQPNVAILGTGAVVKRPV
                     VVQDADGGETIAIRSMVYLALSYDHRIVDGADAARFLTTMKTRLEEGNFEPDLGL"
BASE COUNT          418 a         1059 c         1125 g          493 t
ORIGIN      
        1 tcgccggcct ggacgtcgcc ggctctgaag ccttgcgtac ggacacgtcc gcactgacgg
       61 acctgcgaca tcgcggtcgg tcctaccgcg acgtggtctt cgtcgtgcgc caggcccgaa
      121 ccctgtcgtt ccaggcgccg agcgcgacca tcgaagccgt cgtggacacc gcggcataca
      181 cggtggtgga cgccgtgggc gcggcccggc acgcggccac tggtggagga ccgatgcgct
      241 tctcgctgcg ctggcaggag gagcgctgga agatcgagcg ggtcggcgca ggctagccgg
      301 acagcaggtg cctcagcgcg gaggcgaggt gctggtcagc gtggacgaag cctgcctcgg
      361 tcaggcgcgt cgacaccgcc ctcttgctcg tgagcacctc gtcggagaac ccgcccagca
      421 cgagcttgat ggcgaacgca ggggcaggca ggacagcggg ccgatgcagc tgccgaccca
      481 gctcccgcgc caggtcgagc tggcgggacg gcgtcggccc gaccaggttg accggtccgg
      541 tcacctcgcg atggtcgacc aggaacgcca gaccagcgac ggtgtcacgc aaggagatcc
      601 agggccacca ctgcctgccg ctgcccagac gcccgttgat ccctgcccgc gccagtggca
      661 gcatccgcga catggcgcca ccggcaggag caagcacgat cccggtgcgt ggatggacga
      721 cgggaacgcc cgcgtcgcga gccggatccg ccgcagcctc ccacgcacgg accacctcgc
      781 tgagaaagcc ggtgcccggt tcggactcct cggtcagcac gtcgtccccg cggtcgccgt
      841 agacgcccac ggccgaggcg ctgaccaggc gcgccccgct gcccagctcg gccagcgcct
      901 gcgcgatggc cgtggtccca tcgacccgcg aggcgaggat ctggcgctgg taggcggggg
      961 tccagcggcg ctccccgact ccggctcccg ccaggtggac gacggcatcg atgccacgca
     1021 acgcctcggg gtcgaggcga cgtgacgccg ggtcccaacg cacctcgttc ggaccctggg
     1081 gcgacctgcg caccagctga acgacgtcgt caccacggct ggtcaggaac gacgacagcg
     1141 cgccgccgat caggccggag gatccgctga tggcgacgcg ctgtgacatc gagatcgcag
     1201 cagtctcggg tcagagaccg agatccggct cgaagttgcc ttcttcgagt cgcgtcttca
     1261 tggtcgtcag gaaccgggca gcatcggcac cgtcgacaat ccggtggtcg taggacagtg
     1321 ccagatagac catcgaacgg atggcgatgg tctcaccgcc gtcggcgtcc tgaaccacca
     1381 ccgggcgctt gacgaccgcg ccggtgccca ggatggcgac gttgggctgg ttgatgatcg
     1441 gggtgtcgaa cagcgcgccg cggctgccgg tgttggtcag cgtgaacgtg ccgccaccca
     1501 gctcgtccgg cgtgatcttg ttgccgcggg tgcgttcggc caggtccgcg atcttgcggg
     1561 ccaggccggc gatgttcaga tcgcccgcat ccttgatgac ggggaccagc agcccccgct
     1621 cggtgtcgac ggcgacgccg aggttctccg agccgtggta ggtgacctgg tcgccctcca
     1681 cgctcgcgtt gaccatcggg tgggtcttga gggcctcgac cgaggcgaga gcgaagaacg
     1741 ggaggaagct gagcttggtg gcttcccgcc tctcgaactc ggacttggcc ttcgcacgca
     1801 gccgggcgat cttggtgaca tcgacctcga ccacggtggt gagctgggct gacacgtgca
     1861 aggactccac catgcgtttg gcgatggtct ggcgcaggcg tgacatcttc tccgtcgtgc
     1921 cccgtttggg cgacgcggcg gacggcgagg gtgcacctgc cgtcgcggtg ctggctgcgg
     1981 gtgcggccgg tgcgctgggt gcggccggtg cgctggcggc ggctgccttg gcgacggctg
     2041 ccttggcggc gtccaagacg tcctgcttgc ggatccgccc gccgatccca gtgcccttga
     2101 gcgaaccgag gtcgacgctg ttgtcggcag cgagcttgcg caccagcgga gtgacgtagg
     2161 ccgaggcgtc ggcggagtcg tcggacatcg cctgcggcgt cgagctgacc gcctgcggct
     2221 gcgcgggcgc ttggggggca gcctgcggag cctgctgggc gggcggttcc tgctgggcgg
     2281 gcggttcctg ctgggcgggc ggctgtggtg cggcctgttg aggctgctgc ggtgcgggct
     2341 gctcctgctg cgcggcctgt gccggctgcg cggacgcagg ctgctcctgc tgtgccgcgg
     2401 gagtctgccc gccgcccgtg ccgccgacga tcgccagagc agcgccgacc gggacggtgt
     2461 cgtcctcagc cacgaggatc ttggtcagca cgccggccac cggtgagggg atctccgtgt
     2521 cgaccttgtc cgtggagacc tcgagcagcg gctcgtcgac gtcgacgtgg tcgccctcgg
     2581 ccttgagcca gcgcgtcacg gtgccctcgg tcaccgactc gccgagtgca ggcatcgtca
     2641 cggtctcgcc actggccgag ccaccatctg agctgtcgga ccgctccggc tccgagttcg
     2701 cctgctgcgg ctcctggtcc gtggacggag cctgcgcgac tggcgccgcc tcctgctcgg
     2761 acggggcggg gatttcttgc gtctggggtg cgctgccgtc cgaagccgcg tccgaggagc
     2821 ctgcatctgg ggacccctga ccgtcgccga tcacggcgag gtcggcgccg accgggacgg
     2881 tgtcgtcctc gccggcgagg atctcctgga gcaccccggc cactggggag gggatctccg
     2941 tgtcgacctt gtcggtggag acctcgagca gcggctcgtc cactgcgacg gtgtcgccga
     3001 cgttcttcag ccagcgcgtc acggtgcctt cggtgaccga ctcacccagg gccggcatgg
     3061 tcacgcgttc agacatctgc tcgttctcct cttag
//
LOCUS       DASYFY010000598         6552 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1411357, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000598 DASYFY010000000
VERSION     DASYFY010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6552
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1411357"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VGN19_12235"
     CDS             complement(<1..503)
                     /locus_tag="VGN19_12235"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF013356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEV7196701.1"
                     /translation="MSGSAAASSASAASSSSFSVPRVVVHPTKQLLSDAIGARLLTAL
                     VDVQAERGHVSVVLTGGSLGSAVLASLGALAGRDAVDWTKVDVWWGDERFLPQGDPDR
                     NETQNRQALLDSLPLDPTRVRAMPGPDGPDGDDVAAAAARYAGWLAEAAGAGAGGART
                     EAESPTF"
     gene            complement(500..1624)
                     /locus_tag="VGN19_12240"
     CDS             complement(500..1624)
                     /locus_tag="VGN19_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase assembly
                     protein OpcA"
                     /protein_id="HEV7196702.1"
                     /translation="MIVDLPNTSTVAISKKLVKLRQDTGAMALGRVLTLVIVVDELDA
                     DEAIEAANDASRQHPCRIIAVVLGNKRAQSRIDGQIRVGGDAGASEVVVLRLYGALTD
                     HGRSVVIPLLLPDSPVVAWWPKDAPTKVSEDPIGSMAQRRITDAAESKNPRAMLKSRA
                     STYARGDSDLAWTRITLWRGLLAAALDQAPFEPVVEATVSGGSDSPSTDLLAAWLAQA
                     LKCPVTRARTRVGTGMVSVRLERRSGSVDLVRPDGAIATLSQPGQPVRRISLARRGIA
                     ECLADELRRLDPDEIYEEAIRKGLARLGAKSITASEAVREGEAPSLEQSERDSRRIAR
                     ATAKAGSAQMVQAPPPPDHADEHVVKKAAARKLAKKKTTS"
     gene            complement(1621..3165)
                     /gene="zwf"
                     /locus_tag="VGN19_12245"
     CDS             complement(1621..3165)
                     /gene="zwf"
                     /locus_tag="VGN19_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEV7196703.1"
                     /translation="MSPTRVTPELNPLRDPRDKRLPRIAGPCGMVLFGVTGDLARKKL
                     MPAIYDLANRGLLPPGFSLVGFARRDWADQDFGKIVYDAVKQHARTPFRESVWRNLAE
                     GFRFVPGTFDDPNSFDLLAETVKALEQERGTGGNLAFYLSIPPAFFSGVCEQLERSGL
                     SKPERDSWRRVVIEKPFGHDLKSARELNAIVEGVFPPDAVFRIDHYLGKETVQNLLAF
                     RFANQMFEPVWNANYVDHVQITMAEDIGIGGRAGYYDGIGAARDVIQNHLLQLLALTA
                     MEEPVSFAAQHLRAEKEKVLSAVRHPRDLTKSTARGQYAAGWQGGEQVIGYHAEDGVA
                     QDSHTETYAAMKLEIDSRRWAGVPFYLRTGKRLGKRVTEIAVVFKKAPHLPFNDTATE
                     ELGQNAVVIRVQPDEGITMRFGAKVPGAQMEVRDVTMDFGYGRAFTESSPEAYERLIL
                     DVLLGDPPLFPRHEEVELSWEILDPVETHWAKQKAKPDPYVAGGWGPHSADEMMRRDG
                     RVWRMP"
     gene            complement(3162..4835)
                     /locus_tag="VGN19_12250"
     CDS             complement(3162..4835)
                     /locus_tag="VGN19_12250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005266707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEV7196704.1"
                     /translation="MSALGVVASGAAADAIAARVPELVETQFASKLFAQDATLWGPDA
                     ESESAIRLSWVNLPRSSRPLIGEIAALREELRAEGVDRVVLCGMGGSSLAPEVICATA
                     GVDLVVLDSSQPDMVRDALVELPRTVVVVSSKSGSTVETDSQRRAFQAAFTEAGIEPT
                     RRIVIVTDPGSPLDEESRAAGYRVINADPNVGGRYSALTAFGLVPSGLAGADVEGLLD
                     DAEAVADVLSADDDANPALRLGATMAGTKPLRDKLVLVDEGSGIVGFADWAEQLIAES
                     TGKQGTGILPVVVGADTDPEVARPTEDITIARLVADDDTDPTILTDDVTDTRVDAARS
                     EVEISGPLGAQLLLWEVATAAAGRLLEINPFDQPDVESAKKAARALLDQGIGSAAAAA
                     ATDGAVEIRALGGDWLGDAATVQQAVAALLDQLDPKRGYVAVMAYLDRLKDATLADVR
                     PVLARHTTRPTTFGWGPRFLHSTGQFHKGGPATGVYLQITTAPREDLAIPGREFTFGD
                     FIASQAAGDAQVLAEHGRPVLQLHLTDHDHGLAQVQAVLADLSPTEGEA"
     gene            complement(4832..5968)
                     /gene="tal"
                     /locus_tag="VGN19_12255"
     CDS             complement(4832..5968)
                     /gene="tal"
                     /locus_tag="VGN19_12255"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEV7196705.1"
                     /translation="MTDNAALKALASQGVSIWLDDLSRDRIETGNLQELIDTKGVVGV
                     TTNPSIFQAALAKGERYDADLRTFAAEGKTVDETVFELTTSDVRRACDILMPVFESTN
                     HLDGRVSIEVDPRLAHDTAKTVVEAKKLSAAVDRPNALIKIPATVEGLSAISQVMAEG
                     ISVNVTLIFSLDRYRGVMNAFLTGLEQAREKGKAVSDIASVASFFVSRVDTEVDKRLD
                     AIGTDEAKALKGKAAVANARLAYQAYEEVFSTPRWQNLEDDGAKKQRPLWASTGVKDP
                     AYPDDMYVTELVAPNTVNTMPEKTLDAVADHGEITGDTVTNAYDDAAGVLDALEQLGI
                     SYADVTALLEREGVEKFEASWAELIDEAQHDLDLARTDVAQGDR"
     gene            complement(5974..>6552)
                     /locus_tag="VGN19_12260"
     CDS             complement(5974..>6552)
                     /locus_tag="VGN19_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEV7196706.1"
                     /translation="VLDRKKYAKTTGVAKGAYVLIDGGPDGKSKPDVILIATGSEVSI
                     AIEARETLERQGIPTRVVSMPCREWFEDAGKAYQNRVLPPEVRARVSVEAAVSFGWHD
                     LVGDAGRSISIEHFGASADHKTLYREFGFTPEAVVKAAKDSLKDAKATARKSLAATVT
                     QTRPRAEVSPAKATDTTTKNTAATKSAASKGK"
BASE COUNT          943 a         2203 c         2327 g         1079 t
ORIGIN      
        1 tcgaacgtag gggattcggc ctcggtgcga gcaccaccag caccggcacc ggcagcctca
       61 gcgagccacc cggcataccg ggccgcggcc gcagccacgt cgtccccgtc tgggccgtcc
      121 gggccgggca tggcacgaac cctggttggg tcgagcggga gcgaatcgag cagcgcctgg
      181 cggttctgcg tctcgttccg gtcagggtcg ccctggggca gaaaacgctc gtcgccccac
      241 cagacgtcca ccttggtcca gtccaccgcg tcgcggccgg ccagcgcccc caacgaggcc
      301 aggaccgctg agcccaacga gcccccggtc agcacgaccg agacgtggcc gcgctcggcc
      361 tgcacgtcga ccaatgcggt gagtagtcgg gcaccgatgg catctgagag gagctgtttc
      421 gtcgggtgaa cgacgaccct aggcaccgag aacgacgagg acgatgcggc cgacgcggac
      481 gacgcggccg ccgacccgct catgaggttg tcttcttctt cgcaagcttc cgggcagcgg
      541 ccttcttgac gacgtgctca tcggcatgat cgggcggggg cggcgcctgg accatctggg
      601 cgctgccggc cttggcagtg gcccgagcga tgcgacgcga gtcgcgttcg gactgctcga
      661 gggacggggc ctcaccctcg cgcaccgcct cgctggccgt gatgctcttg gcgccgagtc
      721 gcgccagccc cttgcggatg gcttcctcgt agatctcgtc aggatcgaga cgccgaagct
      781 cgtccgccag gcactccgcg atgccgcgtc gggccaagga gatccggcgc accggttgac
      841 cgggctggct cagcgtggcg atcgcaccgt cgggccgcac caggtccaca gaaccgctgc
      901 ggcgctcgag gcgcacgctg accatgcctg tcccaaccct ggtgcgcgcc cgggtgaccg
      961 ggcacttcag ggcctgggcc aaccaggcag ccaggaggtc cgtggacggg gagtcggacc
     1021 cgccgctgac ggtcgcctcg acgactggct cgaacggtgc ctggtccagg gccgcggcca
     1081 gcaggccacg ccacagcgtg atccgggtcc acgcgagatc gctgtcaccc ctggcatagg
     1141 tcgaagcccg ggacttgagc atcgcccgag ggttcttcga ctcggcggca tcggtgatgc
     1201 ggcgctgagc catcgagccg atcgggtcct cggagacctt ggtgggggcg tccttgggcc
     1261 accaggccac gacgggggag tccggcagga gcagggggat gaccacgctt cgaccatgat
     1321 cggtcagcgc gccgtacaga cgcaggacca cgacctcgct ggcgccggcg tcaccaccga
     1381 ccctgatctg gccgtcgatg cgcgactggg cacgcttgtt gcccagcacc acggcgatga
     1441 tccggcacgg gtgctggcga ctggcgtcgt tggcggcctc gatggcctcg tcggcatcga
     1501 gctcgtccac cacgatgaca agggtcaaga ctcgacccag cgccatcgcc ccggtgtcct
     1561 ggcgcagctt gaccagcttc ttgctgatgg ccaccgtgga cgtgttgggc aggtcgacga
     1621 tcacggcatc ctccagacgc gaccgtcacg gcgcatcatc tcgtcggcac tgtgtggacc
     1681 ccagccccct gcgacataag ggtcgggttt cgccttctgc ttcgcccagt gggtctcgac
     1741 ggggtcgagg atctcccagg acagctcgac ctcctcgtgc cgggggaaca gcggcgggtc
     1801 gcccagcagc acgtccagga tgagccgctc gtaggcctcg gggctggact cggtgaacgc
     1861 ccgcccgtac ccgaagtcca tcgtcacgtc gcgcacctcc atctgggctc cgggcacctt
     1921 ggcgccaaac cgcatggtga tgccctcgtc cggctgcacg cggatgacga ccgcgttctg
     1981 accgagctcc tcggtggcgg tgtcgttgaa cggcaggtgg ggtgccttct tgaagacgac
     2041 cgcgatctcg gtgacgcgct tgcccagccg cttgccggtc cgtaggtaga acggcacccc
     2101 ggcccagcga cgcgagtcga tctccagctt catcgcggca tacgtctcgg tgtgggagtc
     2161 ctgggccacg ccgtcctcgg cgtggtagcc gatgacctgc tcgccgccct gccagcccgc
     2221 cgcgtactgg ccgcgcgcgg tggacttggt caggtcgcgg gggtggcgca ccgccgagag
     2281 gaccttctcc ttctctgcgc gcaggtgctg cgcggcgaag gacacgggct cctccatggc
     2341 cgtcagggcc agcagctgga gcaggtggtt ctggatgacg tcgcgcgcgg cgccgatgcc
     2401 gtcgtagtac ccggcccgcc caccgatccc gatgtcctcg gccatggtga tctggacgtg
     2461 gtcgacgtag ttggcgttcc agacgggctc gaacatctgg ttcgcgaagc ggaacgccag
     2521 gaggttctgg acggtctcct tgccgaggta atggtcgatc cggaagaccg catcgggtgg
     2581 gaagaccccc tccacgatgg cgttgagctc gcgggcgctc ttgagatcat ggccgaacgg
     2641 cttctcgatg accacgcgtc gccaggagtc tcgttcgggc ttgctcagcc cggagcgctc
     2701 gagctgctcg cacacgccgg agaagaacgc cggcgggatg gacaggtaga acgcgaggtt
     2761 gcccccggta ccccgctcct gctcgagcgc cttgacggtc tccgccagca ggtcgaagga
     2821 gttagggtcg tcgaaagtgc ctggtacgaa acggaaccct tcggcgaggt tgcgccacac
     2881 gctctcgcga aagggcgtcc gcgcgtgctg cttcacggcg tcgtagacga tcttgccgaa
     2941 gtcctggtcc gcccagtcgc ggcgggcgaa gccgaccaac gagaagcccg gcggcagcag
     3001 ccctcggttg gcgaggtcgt agatcgcggg catgagcttc ttacgggcca ggtcgcccgt
     3061 cacgccgaac agcaccatgc cgcaggggcc ggcgatgcgg ggcagtcgct tgtctcgcgg
     3121 gtcgcgtagg gggttgagct ccggcgtcac gcgggtcggg ctcatgcctc gccttccgtg
     3181 ggggacaggt cagcgagcac ggcctggacc tgcgccaggc cgtggtcgtg gtcggtcagg
     3241 tgcagctgca gcaccgggcg accgtgttcg gcgaggacct gcgcgtcacc ggctgcctgt
     3301 gaagcgatga agtcgccgaa ggtgaactcc cgaccgggga tggccaggtc ctcccgcggc
     3361 gcggtggtga tctgcagata gacgccggtg gccggaccac ccttgtggaa ctgacccgtg
     3421 gagtgcagga accgggggcc ccagccgaag gtcgtgggac gggtcgtatg ccgtgcgagc
     3481 accgggcgga cgtccgccag ggtggcgtcc ttgagccggt cgaggtacgc catgaccgcg
     3541 acgtaacccc gcttggggtc gagctggtcg agcagagccg ccacggcctg ctgcaccgtc
     3601 gcggcgtcac cgagccagtc gcccccgagc gcgcggatct cgaccgcacc gtctgtggcc
     3661 gctgcagcgg cggcactgcc gatgccctgg tcgagcagcg cgcgggctgc cttcttggca
     3721 ctctccacgt cgggctggtc gaacgggttg atctccaaca ggcgaccggc ggctgcggtg
     3781 gcgacctccc agagcagcag ctgcgcgccg agcgggccgc tgatctcgac ctcggaccgg
     3841 gcggcatcca ctcgggtgtc cgtcacgtcg tccgtcagaa tcgtcgggtc ggtgtcgtcg
     3901 tcggcgacca gccgcgcgat cgtgatgtcc tcggtgggcc gcgcgacctc tgggtcggtg
     3961 tcggcgccca cgacgacggg caggatgccg gtgccctgct tgcctgtgct ttcggcgatc
     4021 agctgctcgg cccagtccgc gaaaccgacg attccggatc cttcgtcgac gagcacgagc
     4081 ttgtcacgca agggtttggt accagccatc gtcgcgccga gccgaagtgc ggggttggcg
     4141 tcgtcgtccg cgctgagcac gtcggcgaca gcctcggcgt cgtcgaggag gccttccacg
     4201 tcggcaccgg ccagtcccga cgggaccagc ccgaacgccg tcagcgccga gtatcggccg
     4261 ccgacgttcg ggtcggcgtt gatgacgcgg taccccgcag cacgcgactc ctcgtcgagg
     4321 gggctgccag ggtcggtgac gatcacgatg cgccgggtgg gctcgatgcc ggcctcggtg
     4381 aacgcggcct ggaaggcgcg ccgctgcgag tcggtctcga cggtggagcc ggacttgctc
     4441 gagacgacca cgacggtgcg gggcagttct acgagggcgt cgcggaccat gtcgggctgg
     4501 gacgagtcga gcacgacgag gtcgacgccg gccgtggcac agatgacctc tggcgcgagc
     4561 gacgagccgc ccatgccgca caggacgacc cggtcgacgc cctccgcgcg gagctcttcg
     4621 cgcagggcgg cgatctcgcc gatcaggggg cgggagctgc gcgggaggtt gacccacgag
     4681 aggcggatcg ccgactcgga ctcggcgtcc gggccccaca gggtcgcatc ctgcgcgaag
     4741 agcttgctgg cgaactgggt ctcgacgagc tcgggcaccc gggccgcgat ggcgtcggcc
     4801 gccgctcccg acgccaccac ccccagtgcg ctcacctgtc gccctgcgcc acgtcggtac
     4861 gagcgaggtc gaggtcgtgc tgggcctcgt cgatcagctc cgcccacgac gcctcgaact
     4921 tctcgacacc ctcgcgctcg agcagggcgg tgacgtcggc atacgagatg cccagctgct
     4981 ccagggcatc gagtacgccg gcggcgtcgt cgtaggcgtt ggtcacggtg tcgccggtga
     5041 tctcgccgtg gtcggccacc gcgtccagcg tcttctcggg catggtgttc acggtgttgg
     5101 gagcgaccag ctcggtgaca tacatgtcgt ccgggtatgc cgggtccttg actccggtgg
     5161 aggcccacag cggccgctgc ttcttcgcgc cgtcatcctc gaggttctgc cagcgtggcg
     5221 tcgagaacac ctcctcgtag gcctggtagg ccagccgcgc gttggcgacc gcggccttgc
     5281 ccttgagcgc cttggcctcg tcggtgccaa tcgcgtcgag gcgcttgtcg acctcggtgt
     5341 cgacgcgaga gacgaagaac gacgcgacgg aggcgatgtc ggacacggcc ttgcccttct
     5401 cgcgcgcttg ctccaaaccc gtcaggaagg cattcatcac cccgcggtag cggtcgaggg
     5461 agaagatcag cgtgacgttg acactgatgc cctcggccat cacctgggag atggcggaca
     5521 gcccctcgac cgtggccggg atcttgatca gggcgttcgg ccggtcgacc gcggcggaga
     5581 gcttcttggc ctccacgacc gtcttggcgg tgtcgtgcgc caggcgcggg tcgacctcga
     5641 tggacacccg gccgtcgagg tggttcgtcg actcgaacac gggcatgagg atgtcgcagg
     5701 cacggcgcac gtcggacgtc gtcagttcga agaccgtctc atcgactgtc ttgccctcgg
     5761 ccgcgaaggt ccgaaggtcg gcgtcgtaac gctcgccctt ggccagagca gcctggaaga
     5821 tcgaggggtt ggtggtcacc ccgacgacgc ccttggtgtc gatgagctcc tgaaggttgc
     5881 cggtctcgat ccggtcccgg gagaggtcgt cgagccagat ggagacgccc tggctggcga
     5941 gagccttgag tgctgcgttg tcagtcacgt gggtcacttc cctttgctcg ctgcgctctt
     6001 ggtcgcagca gtgttcttgg tggtggtgtc ggtggccttg gcgggagaca cctcggcccg
     6061 cgggcgggtc tgggtcacgg ttgcggccag gctcttgcgt gcggtggcct tggcgtcctt
     6121 gagcgagtcc ttggcggcct tcacgacggc ctcgggagtg aacccgaact cgcggtacag
     6181 ggtcttgtgg tcagccgacg caccgaagtg ctcgatgctg atgctgcggc cggcgtcccc
     6241 gacaaggtcg tgccacccga acgagaccgc ggcttcgacg ctgactcgcg cccggacctc
     6301 gggcggcagc acgcggttct ggtacgcctt gccggcgtcc tcgaaccact cgcggcaggg
     6361 catggagacg actcgggtgg ggatgccctg gcgttccagg gtctccctgg cctcgatggc
     6421 gatcgagacc tccgacccgg tggcgatgag gatgacgtcg ggcttgctct tgccgtcagg
     6481 gccaccgtcg atgagcacgt acgcgccctt ggcgactccg gtggtcttcg cgtacttctt
     6541 gcgatcgagg ac
//
LOCUS       DASYFY010000599         1768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_727103, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000599 DASYFY010000000
VERSION     DASYFY010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_727103"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1456
                     /gene="araB"
                     /locus_tag="VGN19_12265"
     CDS             <1..1456
                     /gene="araB"
                     /locus_tag="VGN19_12265"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013599521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008741 - ribulokinase activity [Evidence
                     IEA];
                     GO_process: GO:0019568 - arabinose catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HEV7196707.1"
                     /translation="VRAAGVDPGDVIGIATDFTACTVLPTLADGTPLSELPDLADRPH
                     AYVKLWRHHAAQGQADRINRLAHERGERWIARYGGLISSEWEFAKALQVLEEDPTAYA
                     ACERWVEAADWIVWQLCGSYVRNACTAGYKGILQDGEYPSRDYLAALNPEFAGFVADK
                     LDQPIGQLGRAAGWLTAEAAGWTGLPEGIAVAVGNVDAHVTAPAAQATEPGQMVAIMG
                     TSTCHVMSGAVLRDVPGMCGVVDGGIVAGLWGYEAGQSGVGDIFGWFTRTGLPTEYAA
                     AAAANGQTAHEFLTDLAAKQGVGEHGLVALDWHSGNRSVLVDHELSGLVVGQTLSTRP
                     EDVYRALLESTAFGTRVILEAFRDGGVPVEELIIAGGLAKNRLLMQVYADVTRLPLSV
                     IGSDQGPALGSAIHAAVAAGAYPDVNTAGKAMGKVDRAVFVPDEARAEAYDALFAEYK
                     RLHDYFGRGDNEVMHRLKAIRRTAIAQRTEATAS"
     gene            1453..>1768
                     /locus_tag="VGN19_12270"
     CDS             1453..>1768
                     /locus_tag="VGN19_12270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017833607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEV7196708.1"
                     /translation="MTAVEDVQDAVARLRVQVASLHSELTRYQLVVWTAGNVSARVPG
                     RDLLVIKPSGVAYDDLTPENMVVCDLNGRVVEGLHAPSSDTDAQAYVYRHMPHVGGVV
                     HTH"
BASE COUNT          289 a          620 c          582 g          277 t
ORIGIN      
        1 agttcgagcc gctggtgtgg atccaggcga cgtgatcggc atcgccaccg acttcactgc
       61 ctgcaccgtc ctgccgaccc tcgccgacgg cacccccctg tcagagctgc ccgacctcgc
      121 cgatcgcccg cacgcctacg tcaagttgtg gcgccaccac gccgcgcaag gccaggctga
      181 ccgcatcaac aggctggcgc acgagcgcgg cgagcggtgg attgcccgtt atggcggact
      241 gatctcctcc gaatgggagt tcgccaaggc cctgcaggtc ctcgaagagg acccgaccgc
      301 gtatgccgcg tgcgagcgat gggtggaggc cgccgactgg atcgtgtggc agctctgcgg
      361 ctcctatgtc cgcaatgcct gcaccgccgg ctacaaggga atcctgcagg acggtgagta
      421 cccgtcgcgc gactacctgg ccgcactcaa ccccgagttc gccggcttcg tcgcggacaa
      481 gctcgaccag cccatcggcc agctcgggcg ggccgcgggg tggctgaccg cagaggccgc
      541 cggctggacg ggcctgcccg aggggatcgc ggttgccgtg ggcaacgtgg acgctcacgt
      601 gacagccccc gcggcccaag ccaccgagcc cggccagatg gtcgccatca tgggaacctc
      661 gacctgccac gtcatgtcgg gtgccgtcct gcgcgacgtc cccgggatgt gtggggtcgt
      721 cgacggtggc atcgtcgccg ggctgtgggg ctacgaggcc ggacagtcgg gagtcggaga
      781 catcttcggc tggttcaccc gcaccggtct gccgaccgag tacgccgccg ccgccgcggc
      841 aaacgggcag accgcacacg agttcttgac tgacctcgcg gccaagcaag gagtcggtga
      901 gcacggactg gtggccctgg actggcacag tggcaacagg tcagtgctgg tggaccacga
      961 actctccgga ctcgtcgtcg ggcagaccct gtccaccagg ccagaggacg tctaccgcgc
     1021 cctgctcgag tcgaccgcct tcggcacccg ggtgatcctc gaggcgttcc gtgacggcgg
     1081 cgtccccgtg gaagaactca tcattgccgg cggcctggcg aagaaccgcc tgctgatgca
     1141 ggtgtacgcc gacgtcactc gccttcctct gtctgtcatc ggctcggacc agggccccgc
     1201 ccttggttct gccatccacg ccgcagtcgc ggcgggggcc tacccggacg tgaacaccgc
     1261 cggtaaggcc atgggcaagg tcgaccgcgc agtgttcgtc ccagacgaag cccgagccga
     1321 ggcgtacgac gcactcttcg ctgagtacaa gcgtctccac gactacttcg gccgcggcga
     1381 caacgaggtc atgcaccggc tcaaggccat ccgccgtacc gccattgccc agcgcaccga
     1441 agcgactgcg tcatgaccgc cgtcgaggac gtccaggacg cagtcgctcg cctgcgggtg
     1501 caggtggcct cgctgcacag tgaactgact cgctaccagc tggtcgtctg gaccgcaggc
     1561 aacgtgtccg cgcgggtacc tgggcgagac ttgctcgtca tcaagccgtc gggagtcgcc
     1621 tacgacgacc tgacgcccga gaacatggtg gtttgcgacc tgaacggtcg agtcgtcgaa
     1681 ggtcttcatg cgccgtcgtc ggacaccgac gcccaggcat acgtctaccg ccacatgcct
     1741 cacgtcgggg gagtggttca cacgcact
//
LOCUS       DASYFY010000600         4040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_357983, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000600 DASYFY010000000
VERSION     DASYFY010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4040
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357983"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1160)
                     /locus_tag="VGN19_12275"
     CDS             complement(<1..1160)
                     /locus_tag="VGN19_12275"
                     /inference="COORDINATES: protein motif:HMM:NF040070.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6350 family protein"
                     /protein_id="HEV7196709.1"
                     /translation="MSVTDLLRARMPSSGGSSDRRTLRGAALAGAGAAAVSACVFVLP
                     ALVVWVATSQSTVDWTTALGVGASLWLLGTGAHLVVGPAQVSIVPLAFLALAVLGATR
                     AAARTARPAAQDRTLTYAADLVHRPVAHLLGAWTSGYAACALAWSIVAFAAGPTPTVP
                     SLLMPVVVVPVLAAAVALSRLVQGRPELLGPRGRRPVWLPDAVRRAIRPGLEGAAVLL
                     GIGIAVCVLMVVLRYDRVSHLQSALAPGVIGGVVLIVAQALVVPNLGLWAVSFVAGTG
                     FSSVQGAWVSWTGSRTSLLPMVPVLGALPDPGAFPGYLPVVVLLPVMVGVLVGWRSMR
                     AVARLSTGRTKLIVVSSAVVVSACTLGLLDAVAGASLGSARLSDIGAPAGRMT"
     gene            complement(1316..2209)
                     /gene="sucD"
                     /locus_tag="VGN19_12280"
     CDS             complement(1316..2209)
                     /gene="sucD"
                     /locus_tag="VGN19_12280"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007924448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEV7196710.1"
                     /translation="MAIFLDESSKVIVQGMTGSEGMKHTQRMLRSGTQIVGGVNPKKA
                     GQSVGFEGGVTVPVYGTVAEAIKETGANVSVIFVPPAFAKSAVVEAIDAEIPLAVVIT
                     EGIAVKDTAEFYAYSRAKGTTRIVGPNCPGLISPGKANAGIIPADIAGPGRIGLVSKS
                     GTLTYQMMYELREFGFSSAVGIGGDPIIGTTHIDCLEAFEKDPETDAIVMIGEIGGDA
                     EERAAAYIKEHVTKPVVGYVAGFTAPEGKTMGHAGAIVSGSAGTAAAKQEALEAAGVK
                     VGKTPSATAALMREIMQGLQK"
     gene            complement(2230..3423)
                     /gene="sucC"
                     /locus_tag="VGN19_12285"
     CDS             complement(2230..3423)
                     /gene="sucC"
                     /locus_tag="VGN19_12285"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEV7196711.1"
                     /translation="MDLFEYQARDMFEAHGVPVLAGAIATTPEQARAAAEEIGPKSGG
                     VTVVKAQVKAGGRGKAGGVKVVKSPDEAAEAAKAILGMDIKGHTVGTVMVAQGARIAE
                     EYYFSILLDRANRSYLAMCSKEGGMEIEQLAVERPDALAKVEVDPNTGIDEAKAREIV
                     ETAGFDAETGAKIVPVLQRLWEVYRDEDATLVEVNPLVKTEDGDIVALDGKVTLDENA
                     GFRHPDHESLEDKAAADPLEAAAKAKNLNYVKLDGSVGIIGNGAGLVMSTLDVVAYAG
                     EEFPGSPKPANFLDIGGGASAEVMSNGLHIILGDEQVKSVFVNVFGGITACDAVANGI
                     VGALNNLGDEATKPLVVRLDGNNVEEGRRILAQANHPLVTIEETMDGAARKAAELASA
                     ASHTN"
     gene            complement(3600..>4040)
                     /locus_tag="VGN19_12290"
     CDS             complement(3600..>4040)
                     /locus_tag="VGN19_12290"
                     /inference="COORDINATES: protein motif:HMM:NF037564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3048 C-terminal domain-containing protein"
                     /protein_id="HEV7196712.1"
                     /translation="RDIGFRYGSPTSPGAPATSVVVSWPSSTEELVWNAARKEYLVTS
                     NGQTDISPTGRQYGATTVVVQYVKTHLTPNRDVNGVYTPLADVVGIGAAVVLRDGRVW
                     RGTWTRTSPTQPTAFTAAGTRVTFAPTGTVWVLLVSAGDGVSVR"
BASE COUNT          635 a         1411 c         1382 g          612 t
ORIGIN      
        1 gtcatccgtc ccgccggagc accgatatcc gacagcctcg cggagcccag tgacgctccg
       61 gcgacggcat cgagcagtcc cagcgtgcac gccgagacca ctaccgcgga cgagacgacg
      121 atgagcttgg tgcgtcccgt cgagagccgg gccaccgcgc gcatcgagcg ccatccgacc
      181 agcactccca ccatcacggg tagcagtacg acgacgggca ggtacccggg aaaggcgcca
      241 gggtcgggaa gggctcccag caccggaacc atgggcaaca acgaggtccg actgcccgtc
      301 cagctgaccc aggcgccctg caccgaagag aagccggtgc ccgccacgaa cgacacggcc
      361 cacagcccga ggttgggaac cactagcgcc tgcgccacga tcagcactac gccgccgatg
      421 acgcccggag ccagcgccga ctgcagatgg gagacccggt cgtaccgcag caccaccatc
      481 agcacgcaga cggcgatccc gatgccgagc agcacggcgg caccctccag acccgggcgg
      541 atggcccgcc gtacggcgtc cggcagccag accggacgtc ggccccgcgg ccccagcagc
      601 tcgggtcggc cctggaccaa ccgcgaaagg gcgacggcgg cggcaagcac cgggacgacg
      661 acgacaggca tcaacaggct cggcacggtg ggcgtcgggc ctgcggcaaa ggcgacgatc
      721 gaccaggcca gcgcgcacgc ggcatacccg ctcgtccagg ctcccagcag gtgggccacc
      781 ggccggtgca ccaggtctgc cgcgtaggtg agagtgcggt cctgcgctgc cggccgcgcg
      841 gtgcgcgccg cagctcgggt agcaccgagt acggcgagcg cgaggaaggc cagcgggacg
      901 atgctgacct gggcggggcc caccaccaga tgggcaccgg tgccgagcag ccacaggctc
      961 gcgccgacgc ccagggcggt cgtccagtcc acggtgctct gtgaggtcgc gacccacacc
     1021 accagggcag ggagcacgaa gacgcacgcc gagactgcgg cggctccggc ccccgccagc
     1081 gccgctcccc tcagggtccg acggtcggag gagccccccg acgagggcat tcgggcgcgc
     1141 agcagatccg tgacactcat gaccgtgtca tggtcgccga cttggcaccc cgatcggtcg
     1201 agcaacgccg gtcaggcgcc ggaaaagtcc gaacggaccc cgcccagcgt gaagggtttg
     1261 tcccggcgag acctggacaa acccttcaac ccttcacgtg cgtcactggg tgggactact
     1321 tctgcaggcc ctgcatgatc tcgcgcatca acgcggccgt ggcggaaggc gtcttgccga
     1381 ccttgacgcc agcggcctcg agggcctcct gcttggcggc ggcggtgccg gccgagccgg
     1441 acacgatggc accggcgtgg cccatggtct tgccctcggg ggcggtgaag cccgcgacgt
     1501 agccgacgac cggcttggtc acgtgctcct tgatgtatgc cgcggcgcgc tcctcggcgt
     1561 cgccgccgat ctcgccgatc atgacgatcg cgtcggtctc ggggtccttc tcgaaggcct
     1621 cgaggcagtc gatgtgggtg gtgccgatga tcgggtcgcc gccgatgccg accgcggagg
     1681 agaagccgaa ctcccgcagc tcgtacatca tctggtaggt cagggtgccc gacttggaca
     1741 ccaggccgat gcgtcccggc ccggcgatgt cggcggggat gatgccggcg ttggccttgc
     1801 cggggctgat caggccgggg cagttcgggc cgacgatgcg ggtcgtcccc ttggcgcgcg
     1861 agtaggcgta gaactccgcg gtgtccttga ccgcgatgcc ctccgtgatc accacggcca
     1921 gcgggatctc ggcgtcgatc gcctcgacca cggcggactt cgcgaacgcc ggtggcacga
     1981 agatgaccga cacgttggcg ccggtctcct tgatcgcctc ggcgacggtc ccgtagaccg
     2041 ggacggtcac cccgccctcg aaaccgaccg actggccggc cttcttgggg ttcacgccgc
     2101 cgacgatctg ggtgccggag cgcaacatgc gctgggtgtg tttcatgccc tcggagccgg
     2161 tcatgccctg gacgatgacc ttggagctct cgtcgagaaa gattgccatt tggtatgccg
     2221 ttccttaggt cagtttgtgt ggctggcggc cgaagccagc tccgcggcct tgcgagccgc
     2281 gccgtccatg gtctcttcga tggtcaccaa cgggtggttg gcctgggcga ggatgcgccg
     2341 gccctcctcg acgttgttgc cgtccagacg gacgaccagg ggcttggtcg cctcgtcgcc
     2401 caggttgttc agcgcgccga cgatgccgtt cgccacggcg tcacaggccg tgatcccgcc
     2461 gaagacgttc acgaacacgg acttgacctg ctcgtcaccc aggatgatgt gcagcccgtt
     2521 ggacatgacc tccgcggagg caccgccacc gatgtcgagg aagttggcgg gcttgggcga
     2581 tccggggaac tcttcaccgg cataggccac gacgtccagc gtggacatga ccagcccggc
     2641 gccgttgccg atgatgccga cggagccgtc gagcttgacg tagttgaggt tcttggcctt
     2701 ggcggcggcc tccagcgggt cagccgcggc cttgtcctcg agggactcgt ggtcggggtg
     2761 acggaagccg gcgttctcgt cgagagtcac cttgccgtcc agcgcgacga tgtcgccgtc
     2821 ctcggtcttc accagcgggt tcacctcgac caaagtggcg tcctcgtcgc ggtagacctc
     2881 ccagaggcgc tgcaggacgg gcacgatctt ggcgccggtc tcggcgtcga agcctgccgt
     2941 ctccacgatc tcgcgagcct tggcctcgtc gatgccggtg ttggggtcga cctcgacctt
     3001 ggccagcgca tcgggacgct cgacggcgag ctgctcgatc tccatgccgc cctccttgct
     3061 gcacatggca aggtacgagc ggttggcacg gtccagcagg atggagaagt agtactcctc
     3121 ggcgatgcgg gcgccctggg ccaccatgac ggtgccgacg gtgtggccct tgatatccat
     3181 accgagaatg gctttggctg cttcagctgc ctcatcaggg ctcttgacga ccttgacgcc
     3241 gccggccttg ccgcgacccc cggccttgac ctgagccttc acgacggtaa cgccgccgct
     3301 cttggggccg atctcctccg cggccgcacg ggcctgctcg ggagtggtgg cgatggcgcc
     3361 ggcgagcacc ggcacgccgt gcgcctcgaa catgtcgcgc gcctggtatt cgaacagatc
     3421 cacgtctgac gtcctcgtct acggaaggga gtggttcgtg cccgagacta gccctctcgg
     3481 cgcacgcgga tgccctcggg tactgggcgc acaccccaat gggaccaatc tcaccgcgac
     3541 cggcggcgac tgcgtccaga ccctgcggcg cctctgccca cgagcgtggg ctgtcgtcct
     3601 cagcggacgc tgacgccgtc cccggcactc accaggagaa cccacaccgt gcccgtggga
     3661 gcgaaggtga ctctcgtgcc tgctgcggtg aacgccgtgg gctgcgtcgg ggaggtgcgg
     3721 gtccaggtgc cccgccagac gcgcccgtcc cggagaacca ctgccgcgcc gatgccgacg
     3781 acatcggcga gcggcgtgta cacgccgttg acatcccggt tcggcgtcag atgcgtcttg
     3841 acgtactgga cgaccaccgt cgtggcgccg tactgccgac cggtgggact gatgtccgtc
     3901 tgcccattgc tggtcaccag gtactccttg cgcgccgcat tccagaccag ctcctccgtg
     3961 gaggagggcc aggacacgac caccgaggtg gcgggcgcgc ccggagaggt cggcgacccg
     4021 taccggaagc cgatgtcgcg
//
LOCUS       DASYFY010000601         2513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_463450, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000601 DASYFY010000000
VERSION     DASYFY010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463450"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..1372)
                     /locus_tag="VGN19_12295"
     CDS             complement(8..1372)
                     /locus_tag="VGN19_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEV7196713.1"
                     /translation="MTDDVLSTDQIATIKTVVAGLMPGIRADLEDLTRIPSVSLDAFD
                     QAHVEASAEATAALLRAEGLEVEIVREGGRPAVIGHVDGPAGAPTVMLYAHHDVQPPG
                     DDEDWDSPPFEPTERDGRLYGRGAADDKAGIMAHLAALRAHAGHLPVGVTVFVEGEEE
                     IGSDSLATILERHGEKLRADAIVLADSTNWALGEPALTTTLRGLIRVVLTVTTLDHGV
                     HSGMFGGPVPDALTCLVRLLATLHDDAGDVAIEGLKSGKASDLDFDEARLREESGLLD
                     GVEVIGTGSLLDRMWTKPTATVIGIDAPSVAKASNTLVPTASAKVSIRLAPDEVPLEA
                     YAAVQRHVEAHTPWGARVEVHLDDQGAGFDAHAEGPVYDQARAAFTDAWGVEPVDIGV
                     GGSIPFVASFAERFPEAAILVTGVEDPDTRAHGANESLHLGEFEKVCVAEALLLARLG
                     ALPR"
     gene            1442..2026
                     /locus_tag="VGN19_12300"
     CDS             1442..2026
                     /locus_tag="VGN19_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3043 domain-containing protein"
                     /protein_id="HEV7196714.1"
                     /translation="MFGRSSKTLNAQQAETAQREAREGAKNRPTPKRRDQEAANRRPL
                     VVTDRKEARDVERTKRREAQLRQREAMVTGNEANLPARDKGPVKRYIRDFVDARWNVG
                     EFMLPVMLVVLALSFIRSLAIFAIVSTGVYLILLLAIVDGFLMWRRLKKRIVAKFGAD
                     HAVRGLAMYAAMRGFQLRRSRMPRPQVKRGEYPA"
     gene            complement(2086..2301)
                     /locus_tag="VGN19_12305"
     CDS             complement(2086..2301)
                     /locus_tag="VGN19_12305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196715.1"
                     /translation="MAQAWTWTYLDAEGRELSGDGLVDTEFPSQSDAENWFGESWHDL
                     TAAGVDAVNLYCDGVLSYGPMSLRAVE"
     regulatory      2360..2510
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          389 a          847 c          881 g          396 t
ORIGIN      
        1 ttgcggtcta cctcgggagc gctcccaggc gcgcgagcaa gagtgcctcg gctacacaga
       61 ccttctcgaa ctcgccgagg tgcaacgact cgttggcgcc atgcgcacgg gtatcggggt
      121 cctcgacgcc cgtcacgagg atcgcggcct cggggaaccg ctccgcgaac gaggccacga
      181 acgggatgga cccaccgaca ccgatgtcca cgggctcgac gccccaggcg tcggtgaagg
      241 ccgctcgcgc ctggtcgtag accggaccct cggcgtgggc gtcgaagccg gcgccctggt
      301 cgtcgaggtg aacctcgacc cgggcccccc acggggtgtg ggcctccacg tgccgctgca
      361 ccgcggcata cgcctcgagg ggcacctcgt cgggagccag gcggatggaa accttcgcac
      421 tggccgtggg cacgagcgtg ttggaggcct tggccacgga cggggcgtcg atgccgatga
      481 ccgtcgcggt cggcttggtc cacatgcggt ccagcagcga tccggtcccg atcacctcga
      541 ctccgtccag cagtcctgac tcctcgcgca accgggcctc gtcgaagtcg aggtcgctgg
      601 ccttgccgga cttgagaccc tcgatggcga cgtccccggc gtcgtcgtgc agggtggcca
      661 gcaggcgcac cagacacgtg agggcgtcgg ggacggggcc gccgaacatg cccgaatgca
      721 cgccgtggtc gagcgtggtg acggtgagga cgacgcgaat caggccacgg agcgtcgtgg
      781 tcagcgccgg ctcacccagc gcccagttgg tcgagtcggc cagcacgatg gcgtcggcgc
      841 gtagcttctc accgtgacgc tccaggatcg tcgcgagcga gtcggagccg atctcctcct
      901 ccccctcgac gaacaccgtg acccccacgg gtaggtgtcc ggcatgggcg cgcagggccg
      961 cgaggtgggc catgatgccc gccttgtcgt cggccgcccc acggccgtag aggcggccgt
     1021 cacgctctgt gggctcgaac ggcgggctgt cccagtcctc gtcgtctccg ggcggttgta
     1081 cgtcgtggtg cgcatagagc atgaccgtcg gggcgccagc aggcccgtcg acgtgaccga
     1141 tgaccgcagg ccgcccaccc tcgcggacga tctcgacctc gaggccctcg gcgcgcagca
     1201 gggcggcggt ggcttcggcg ctcgcctcca cgtgagcctg gtcgaaggcg tcgagggaga
     1261 cgctggggat acgggtcagg tcctccaggt ccgcgcggat gccgggcatc aggccggcca
     1321 ccacagtctt gatggtcgcg atctggtctg tgctgagaac gtcgtcggtc acggggcgtg
     1381 agcctaatgg gtggaagcga tggattctgg agcggcctgg gctacggcat acagtggtcg
     1441 tgtgtttgga cgcagcagca agaccctgaa cgcgcagcag gccgagacgg cccagcgcga
     1501 ggcccgcgag ggcgccaaga accggcccac gcccaagcgg cgcgaccagg aggccgccaa
     1561 ccggcgtccg cttgtggtca ccgaccgcaa ggaggcgcgg gacgtcgaac gcaccaagcg
     1621 ccgcgaggct cagctgaggc agcgcgaggc catggtgacc gggaacgagg ccaacctgcc
     1681 cgcacgcgac aaggggccgg tcaagcgcta catccgtgac tttgtcgacg cgcgctggaa
     1741 cgtcggcgag ttcatgctgc cggtcatgct ggtggtgctg gcgctgtcgt tcattcgctc
     1801 gctggcgatc ttcgccatcg tctcgaccgg ggtctacctg atcctgctgt tggcgatcgt
     1861 ggacggcttc ctgatgtggc gtcgcctcaa gaagcggatc gtggccaagt tcggcgccga
     1921 ccatgccgtg cgcgggctag ccatgtatgc cgcgatgcgc ggcttccagc tgcgtcgctc
     1981 tcggatgcca cgtccccagg tcaagcgcgg cgagtatccg gcctaggcca ctgcgttagc
     2041 gccgagtcac gcgactgagt cacccgcctg agtcacccgc ctgagttact cgactgcgcg
     2101 caggctcatc gggccgtagc tcaggacccc gtcgcagtag aggttgaccg catcgacccc
     2161 ggccgcggtc aggtcgtgcc aggactctcc aaaccagttc tcggcatcgg actgcgacgg
     2221 gaactctgtg tcgaccagtc catctcccga cagctcacgg ccctcggcgt ccagataggt
     2281 ccacgtccat gcttgcgcca tgagggccac tgtagagggt gactcagggg gcgcccgtgg
     2341 gacggctttg acagccgggg ccggtggtgg gacggttcgt tcgtcgatca agccacgatc
     2401 tgggtaagcc ggttcaactc cggcgctgtc ccgcaaccgt aggccaccga cggaccgcga
     2461 ggtctgttcg gcggcgagcc ggaaaaccag cgtggccttt cgactccatc att
//
LOCUS       DASYFY010000602         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_463625, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000602 DASYFY010000000
VERSION     DASYFY010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463625"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VGN19_12310"
     CDS             <1..429
                     /locus_tag="VGN19_12310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEV7196716.1"
                     /translation="TSGKGAELYRDKLLPAVEEGLAKSGRASTDLDRMIEIKLSWDPD
                     RTQAVANCRFWAPLSLTPEQKHGTSDPLEMERLGDALSDEQVASRWIVSDDPEEVVAA
                     VKQYVDWGFTHLVFHGPGPDQSRFLTTFADRVLPGLRELG"
     gene            472..1143
                     /locus_tag="VGN19_12315"
     CDS             472..1143
                     /locus_tag="VGN19_12315"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7196717.1"
                     /translation="MSETVSSAAPGPSGSSVAPEPRTRWSEVSGGLGGASAYQQRFDD
                     LAASGVDIHGEAAFVEALVPPPARILDAGCGTGRVATQLTSLGYDCVGVDADPDMIAL
                     AERRDPATRWVRQDLSRLALRTQAFDVAILAGNVIPLLAPGTLLAAVQRLAAHLQPGG
                     LLVAGFGLDADHLPPRVPPTTLRDYDRACDVAGLSFLRRYATWDRESWRPETGYAVSV
                     HRLND"
     gene            complement(1183..1371)
                     /locus_tag="VGN19_12320"
     CDS             complement(1183..1371)
                     /locus_tag="VGN19_12320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminopeptidase"
                     /protein_id="HEV7196718.1"
                     /translation="MAYWYNLTTGQVESDSNKSQSDDLMGPYDSQAEAANALETARKR
                     TEAWDEKDRKWDEGGAED"
     gene            1421..>1899
                     /locus_tag="VGN19_12325"
     CDS             1421..>1899
                     /locus_tag="VGN19_12325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEV7196719.1"
                     /translation="MPLMYASVAPGVVSPRRPIPASIERPEYVDKPAPSKDHGSEVKD
                     AETIERMRVAGRIAAQAMEAAAAVIAPGVTTDEIDRVAHEFLLDHRAYPSTLGYKGFP
                     KSLCTSVNEVVCHGIPDSRPLDDGDIVNIDITAYIGGVHGDTDATYLCGDVDEESRLL
                     "
BASE COUNT          279 a          687 c          627 g          306 t
ORIGIN      
        1 acctccggca agggggccga gctgtaccgg gacaagctgc tccccgccgt cgaggagggc
       61 ctggcgaagt ctggccgagc cagcaccgac ctagaccgga tgatcgagat caagctgtcc
      121 tgggaccccg accgcaccca ggccgtggcg aactgccggt tctgggcgcc gttgtcgctg
      181 accccggaac agaagcacgg cacctccgac cctttggaga tggagcgcct cggagacgca
      241 ctgtcggacg agcaggtagc gtcccggtgg atcgtctcgg acgaccccga ggaggtcgtc
      301 gcggcggtga agcagtacgt cgactggggc ttcacccacc tggtgttcca cggccccggg
      361 cctgaccaga gccggttcct gacgacgttc gccgaccggg tcctgccggg gcttcgggag
      421 cttgggtgac gacgggttcc cttcccgcac aaggaaacct acgctggtct catgagcgag
      481 acggtgtcgt cggcggcccc agggccatcg gggtcctcag tcgcccctga accgcgcacg
      541 aggtggtccg aggtttcggg cggactcggc ggcgcctcgg cataccaaca gcggttcgac
      601 gacctcgcag ccagcggtgt cgacatccac ggggaggcgg ccttcgtcga ggcgctcgtt
      661 cccccacccg ccaggatcct ggacgccggc tgcggcacgg gcagggtagc cacccagctg
      721 accagcctgg gatacgactg cgtgggggtc gacgccgacc ccgacatgat cgccctggcc
      781 gaacgtcgcg acccggcgac gcggtgggtg cgtcaggacc tcagccggct cgcgctgcgc
      841 acccaggcct tcgacgtggc catcctggcg ggcaacgtga tccccctgct ggccccgggg
      901 acgctcctcg cggccgttca gcggctcgcc gcgcacctgc agccgggcgg cctgctggtc
      961 gccggtttcg ggctcgacgc ggaccacctg ccaccgcggg tgccccccac cacgttgcgc
     1021 gactacgacc gcgcctgcga cgtggcgggc ctgtccttcc tgcgacgcta cgccacctgg
     1081 gaccgggagt cctggcgccc cgagacgggg tatgccgtct cggtccaccg cctcaacgac
     1141 tagtgcgcct cgacgactag tgcgcctcaa cggctggttg aactagtcct cggcgccgcc
     1201 ctcatcccat ttccggtcct tctcgtccca ggcttcggtg cgcttgcgcg ccgtctccag
     1261 cgcgttggcc gcctcggcct gcgagtcgta cggccccatg aggtcgtcgc tctgactctt
     1321 gttgctgtcg ctctccacct gaccggtcgt gaggttgtac cagtaagcca tcgttgccct
     1381 ccaggtcgac ggacgctcgg acgtccctag actccaccgt atgccgttga tgtacgcaag
     1441 tgtggcgcca ggtgtggtgt cgccccgccg ccccatcccc gcctccatcg agcggccgga
     1501 gtatgtcgac aagccggctc cgtcgaagga ccacgggtct gaggtcaagg atgccgagac
     1561 gatcgagcgg atgcgggtgg ccgggcgcat cgcggctcag gcgatggagg cggccgccgc
     1621 cgtgatcgcc cccggtgtca ccacagacga gatcgaccgg gtcgcccacg agttcctcct
     1681 cgaccaccgc gcctacccct cgacgttggg gtacaagggg ttcccgaagt cgctgtgcac
     1741 ctcggtcaac gaggtggtct gccacggcat ccccgacagc cgccccctcg acgacggcga
     1801 catcgtcaac atcgacatca ccgcctacat cggtggcgtt catggcgaca cagacgccac
     1861 ctacctgtgt ggtgacgtcg acgaggagtc gcgactcct
//
LOCUS       DASYFY010000603         5521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1621097, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000603 DASYFY010000000
VERSION     DASYFY010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5521
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1621097"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VGN19_12330"
     CDS             complement(<1..221)
                     /locus_tag="VGN19_12330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196720.1"
                     /translation="MTHAFAGPDSLATRAAHAFTAYRDGDTAHMDELVDLLNPILWNV
                     ARAQGLTPPAAEDAVQTAWLRLVEHAERI"
     gene            complement(218..1879)
                     /locus_tag="VGN19_12335"
     CDS             complement(218..1879)
                     /locus_tag="VGN19_12335"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8/S53 family peptidase"
                     /protein_id="HEV7196721.1"
                     /translation="MEPGQPPTSDGQDGAAATRLPPRRTTSRKPVIGVPRSALDRFQA
                     RVLDPSTAQRIENRAPQPTAYVGNQLLVAGLVGLGADRRLETLGQVAEQLGLAIRVSD
                     QDLRVAGLLADRGDGELVDRVYATRVILSRIGAQPAPPVDAWDVLLAARAAGLGGLDL
                     TLDHVLSGCPGMGGVGYWDGVGYWDGVGYWDGVGYWDGVSAAGLSEYARPGVGARTPV
                     VWQAPDPRPLAPKVERAPIVALLDTGIGQHPWFTPGDGGFEKDVFFHGIRIGTDFTPA
                     EDPENTGVVSDTLNGRLDPEAGHGTFIAGVVRQRCPQAHLLTIPVLPADGAVEEHDVH
                     FALVLLLLRHLDAQRHGNQAEVVDVLSLSMGYYHETPEDALADSPLKNLLLAYAASGV
                     TVVMAAGNHGTTEPFFPAAFGASPDIPGSPDPDDSAGPVPLTTVGALNPDASTIALFS
                     NSGPWVTTHRVGAAIVSTVPVTLRGSTEPSIWVERYDALDRATVGPETYPGGFALWSG
                     TSFAAPAAAGELAAFIATAGGSIDRDEACERGRKAVAHVIDAGPR"
     gene            complement(2399..3355)
                     /locus_tag="VGN19_12340"
     CDS             complement(2399..3355)
                     /locus_tag="VGN19_12340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196722.1"
                     /translation="MREQGDHSDHDVESTLPRVRHRPARHQMRLSPWTSECIVKTGRI
                     LAAAGAALLLFGVGVAYAATTSATTGTASAGAAWVRPSAATTGYHGALSRWAGSTTFT
                     ANNQTISNTDFGGYLKVTGANLVLNNCHFAGMVFLGPGPLTVKNCTSNGGINSDASKR
                     PINGVTYDHVHVIAGAHDGIDVFSSSANHESNVTLVDTLIDGMHFPAGSKSHGDGLQV
                     RGVNGLTMTRVVVNDGLYQSQDNSAIYFENVNGGDSNMHLTNVDLYGGGYTFYTNAVH
                     GSSATNLAVKAAGHWGAYHSNAKPSGWSFANVTGPSSAQMAP"
     gene            complement(3635..>5521)
                     /locus_tag="VGN19_12345"
     CDS             complement(3635..>5521)
                     /locus_tag="VGN19_12345"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEV7196723.1"
                     /translation="TADVGVLWTRAPGGEQLTPTAQWDRLEFDREVTELTAYQGLEPT
                     AYRCSASVIEPLTTPRSLVPAAASADPAGPEALLVALAAPRTAGSALRVPLRSRGQLI
                     GMVDIARTRTDTPFSAHEIGLVADIAERCALALDNAQLLNDQRRASEELMKFRALADA
                     SDNYIGIADTDERLVYLNPRARAAGIKDDAGYTWEALSDWVGPKDAEAVRAHVTATGR
                     WSGPLPTDPPDADPGSLPDELVTYLDVFGLQHPGTGVALGTAWVARDITELRATAHAL
                     RLANSELSRFEALVQASKDFIAIADLDGRVRYVNPGGRAMVGLDADADVTATTIADYL
                     TPESLAASVEIEQPAVVERGHWNGQSTLRHHRGGRSIPVAVASFLMRDTVTGEPFALA
                     TVQRDLTDLVAAETALDKLAQQRAVLLTRLVVAQDAERVRIANDVHDDTVQALAAVDL
                     RLGLLRRRLREHAPDLLTELDGLQETVSGATERLRALLFDLEPPDLADGLAPALARAG
                     EELFEGTRTICRVDGDGEPPMPEASRAVAYRIAKEALVNVVKHAEAHRVLICVMGVED
                     GLQVEVHDDGVGAGDAVNESLAGHRGVSSMRDRATLAGGHCTLGVSPYGGTSMILWLP
                     GPAS"
BASE COUNT          773 a         1845 c         2011 g          892 t
ORIGIN      
        1 tcgatccttt ccgcgtgctc gacgaggcgg agccacgccg tctgcaccgc gtcctccgcg
       61 gctggcgggg tcagaccttg cgcccgggcg acgttccaca ggatggggtt gagcaggtcc
      121 accagctcgt ccatgtgggc ggtgtcgccg tcacggtagg ccgtgaacgc gtgcgcggcc
      181 ctggtggcca aactgtccgg gccggcgaac gcgtgcgtca tcgcggacct gcgtcgatga
      241 cgtgagccac ggccttccga ccgcgctcgc aggcctcgtc tcggtcgatg ctgccacccg
      301 cggtagcgat gaaggcggcg agctcaccgg ccgccgccgg ggctgcgaac gacgtgccgc
      361 tccacagggc gaagccgccc gggtacgtct ccgggccaac ggtggcccgg tcgagcgcgt
      421 cgtagcgctc cacccagatg ctcggctcgg tgctgcctcg caacgtgacg gggacggtgc
      481 tgacgatggc ggcgcccacc cgatgggtcg tgacccaggg gccgctgttg gagaacaggg
      541 cgatcgtgct ggcgtccggg ttcagggctc cgaccgtcgt caggggcaca gggccggctg
      601 agtcgtcggg gtcggggctc ccggggatat cgggggaggc cccgaaggcg gctgggaaga
      661 acggctcggt ggtgccgtgg ttaccggcag ccatgaccac ggtgactcct gacgcggcat
      721 acgcgaggag aaggttcttc aaggggctgt cggcgagggc gtcctcggga gtctcgtggt
      781 agtagcccat ggacaggctg aggacgtcca cgacctcggc ctggttgccg tggcgctgtg
      841 cgtcgaggtg gcgcagcagc agcaggacca gggcgaagtg cacgtcgtgc tcctcgacgg
      901 cgccgtccgc cggcaacacc gggatggtga gcaggtgcgc ctgcgggcag cgctgccgca
      961 ccacgcccgc gatgaaggtg ccgtggccgg cctccggatc gaggcgcccg ttgagggtgt
     1021 cactgaccac tccggtgttc tccgggtcct cggcgggggt gaagtccgtc ccgatgcgta
     1081 tgccgtggaa gaacacgtcc ttctcgaagc cgccatcgcc tggggtgaac cacgggtgct
     1141 ggccgatgcc cgtgtcgagc agggcgacga tgggcgcacg ctcgaccttc ggggccagcg
     1201 gtctcgggtc gggtgcctgc cacaccaccg gggtgcgggc gccgacgccg ggccgggcgt
     1261 actcgctcag acctgcggca ctgaccccgt cccagtagcc gacgccatcc cagtagccca
     1321 ctccgtccca gtagccgacc ccgtcccagt agccgacccc gcccatcccg gggcaccccg
     1381 acaggacgtg gtcaagggtg aggtcgagac cgcccagccc tgcggcccgc gcggccagca
     1441 gcacgtccca ggcgtcgacc gggggcgcgg gctgcgcccc gatgcggctg aggatgacgc
     1501 gagtcgcgta cacccggtcg accagctccc cgtcgccgcg gtcggccagc agaccggcca
     1561 cacgcagatc ctggtcggac acccggatgg ccaggccgag ctgctcggcg acctgaccga
     1621 gggtctccag gcgtcggtct gcgccgagcc ccacgaggcc cgcgaccagc agctggttcc
     1681 cgacgtaggc agtgggctgc ggggcgcggt tctcgatgcg ctgcgcggtc gacgggtcga
     1741 ggacccgtgc ctggaaccgg tcgagagccg atcgtggcac cccgatgacc ggcttgcgtg
     1801 aggtggtccg acgaggcggc agtcgggtgg cggctgcgcc gtcctgtccg tcgctggtgg
     1861 ggggctgccc gggctccatg gctcgctcct gtggccggcc gctgcgtgag cgcagcgggt
     1921 gcggatccat acctccctaa tgagagcgca cccagcctgg tgatacagcc gcttcccaga
     1981 atctgtctgc ggggggacgt atcaggcggc ccgctcacca ctcttgtgcg gtgtcagacc
     2041 tggtcggggg atcggggcgg atgcacggag ggaaaagccc atgtcgcgta gctcaggtgg
     2101 tcggcggacc ccctgtcgcg cggatggggg gagtcgggct cgggggtgcc cgctctcgct
     2161 ccggcagtgc ggggggatgc gctgccggag cgctccgagg cagcgtccgc gggtcgggcc
     2221 tggtcgtgga aggtgctggt cagggggacc cagcacgcgc ccggccaggc cgcggcgtcg
     2281 gcgtcgctga cgcagtgctc acccactcgg gctgggtacg gttgcgcgcg aaagcggcgc
     2341 cgcatacctc tacctcatgc ttggtatgct gcgccgctca cgcgctgggg ggcttgcgtc
     2401 agggcgccat ctgcgcgctg ctggggccgg tgacgttggc gaacgaccat ccggatggct
     2461 tggcgttgga gtggtacgca ccccagtgcc cggccgcctt gacggcgagg ttcgtcgcgg
     2521 acgacccgtg gacggcgttg gtgtagaacg tgtagccacc gccatacagg tccacgttgg
     2581 tcaggtgcat gttgctgtca ccgccgttga cgttctcgaa gtagatcgcc gagttgtcct
     2641 gtgactggta cagcccgtcg ttgacgacca cccgagtcat ggtcagcccg ttgacgccgc
     2701 gcacctgtag cccgtcgccg tgcgatttcg acccagccgg gaagtgcatc ccgtcgatga
     2761 gggtgtctac cagcgtcacg ttcgactcgt ggttcgcgct ggaggagaac acgtcgatgc
     2821 cgtcgtgcgc accggcgatg acatggacgt ggtcgtaggt caccccgttg atgggtcgct
     2881 tcgaggcgtc ggagttgatc ccaccgttac tggtgcagtt cttgaccgtc agcgggccgg
     2941 ggccgaggaa caccatcccg gcgaaatggc agttgttcag gacgaggttc gcaccggtga
     3001 ccttgaggta gccgccgaag tcggtgttgc tgatcgtctg gttgttcgcg gtgaaggtgg
     3061 tcgaaccagc ccaccgggac agcgcgccgt ggtagcccgt cgtggccgca gagggccgga
     3121 cccaggccgc acctgcggac gcggtgccgg tggtagcgct ggtcgtcgcc gcataagcca
     3181 cgccgacccc gaacaggagc agggccgccc cggcggccgc cagtattcga ccggtcttca
     3241 cgatgcactc actggtccac ggcgatagac gcatctggtg ccgtgccggt cgatgacgga
     3301 cgcgtggcag tgtgctctcg acgtcgtggt cgctgtggtc accctgctca cgcatggtct
     3361 cgagactgtg gtcgagcggt cggtctggcc gtgctggggg gatcgcagcg caatccgggt
     3421 gtcaggcatc gggtctcctt ggaggggcgg caaaggggcg ccgctggtgg ttcgggcagc
     3481 gcatcatcac ggtgcgcatg ctccttctgg ttggatcggc aggccctcgg gggcttcagg
     3541 cccaccgacc cgctccccac cttggttctc caggggggcc gccgcccgat gccgcggcgg
     3601 cagttgctct agtgcgcggg gatcagttcg gtccctacga ggccggccct ggcagccaga
     3661 ggatcatgct cgtacccccg tacgggctga ccccgagcgt gcaatggcct ccggccaatg
     3721 tcgcgcgatc gcgcatgctt gacacgcctc ggtgccccgc aagggactcg ttgacggcat
     3781 cgccggcccc caccccgtca tcatggactt cgacctggag cccgtcttcg acccccatca
     3841 cgcagatgag cacccgatgc gcctccgcgt gcttgacgac gttgaccagc gcctccttgg
     3901 caatgcggta cgcgacagcc cgactcgcct ctggcatggg cggttcgcca tcaccgtcga
     3961 cccggcagat ggtccgagtg ccctcgaaaa gctcctcgcc tgcccgcgcc aaggcgggag
     4021 ccaacccgtc agccagatct ggcggctcca ggtcgaacaa caaggccctg agccgctcgg
     4081 tggctccgct caccgtctcc tggagcccgt cgagctccgt caacaggtct ggagcgtgct
     4141 ctcgtagacg gcgtcgcagc agccccaggc gcagatccac agcggcgagc gcctgcacgg
     4201 tgtcatcgtg cacgtcgttc gcgatgcgga cccgttcggc atcttgagcg acgacgagcc
     4261 gggtcagcag gacggcccgc tgttgggcca gcttgtccaa cgcagtctcg gccgccacga
     4321 gatccgtcag gtcgcgttga accgtggcca gcgcgaaggg ctcgccggtg accgtgtcgc
     4381 gcatcaggaa gctcgcgacg gcaacgggaa tcgaccgacc gccgcggtgg tggcgcaggg
     4441 tcgactggcc gttccagtgc ccccgttcga cgacggcggg ttgctcgatc tccacggagg
     4501 cggccaggct ctcgggtgtc aggtagtccg cgatggtggt ggcggtgaca tcggcgtcgg
     4561 cgtccaggcc gaccatcgcc cggccccccg ggttcacata cctgacgcgg ccgtccaggt
     4621 ccgcgatggc gatgaagtcc ttggacgcct ggacgagggc ctcgaaccgg ctcagctccg
     4681 agttggccag tcgcagcgcg tgtgcggtgg cacgcagttc ggtgatgtcc cgcgcgaccc
     4741 aggccgtgcc caaggcgacg ccggtgcctg ggtgttgcaa cccgaaaacg tccagatagg
     4801 tgaccagctc gtcagggagg cttccagggt cggcgtccgg ggggtctgtc ggaagggggc
     4861 cggaccagcg accggtcgcc gtgacgtgcg cgcggaccgc ctcggcatcc ttcgggccga
     4921 cccagtccga caacgcctcc cacgtgtaac cggcgtcatc cttgatcccc gctgccctgg
     4981 cgcgtgggtt gagatacacg aggcgctcgt cggtatcggc gatgccgatg tagttgtccg
     5041 acgcgtccgc gagggcccgg aacttcatca gctcctcgct ggcgcggcgc tggtcgttca
     5101 ggagctgggc gttgtccaga gccaaggcgc atcgctcggc gatgtcggcg accaagccga
     5161 tctcgtgggc ggagaacggg gtgtccgtgc gggtcctggc gatgtcgacc atgccgatga
     5221 gctggccccg ggagcgcaac gggacgcgca gggcgctgcc cgccgtccgt ggggcggcga
     5281 gggcgaccag cagcgcctcc ggcccagcgg ggtcggccga ggctgcggcc ggaaccagtg
     5341 accgtggcgt tgtgagcggt tcgatgaccg aggctgagca ccggtatgcc gtgggctcga
     5401 gcccctgata tgcggtcagc tcggtgacct cgcggtcgaa ctcgagccgg tcccattgtg
     5461 ctgtcggggt gagctgttcg ccgcctggcg ccctggtcca gagcaccccc acatcagcag
     5521 t
//
LOCUS       DASYFY010000604         3306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1778636, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000604 DASYFY010000000
VERSION     DASYFY010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1778636"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..1898)
                     /locus_tag="VGN19_12350"
     CDS             complement(192..1898)
                     /locus_tag="VGN19_12350"
                     /inference="COORDINATES: protein motif:HMM:NF025627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfotransferase family protein"
                     /protein_id="HEV7196724.1"
                     /translation="MSVFPIPGSHFAAPTAQVTFRGLPASQLGTVTVSGSVSGAHPGS
                     VLADSDGDGGSFVPATPFAAGEVVTVGTSLNLEGSGSGVYQFQVATPAGPAPFAHRPA
                     AGRVKGDVWRFRSRPDLAPAAVRITKPDPGGGGDIFVAPQIGPFQQGPEIIGPTGGLI
                     WFYPVPTDIAATDFRVQSYQGHPVLTWWQGNETAGIGNGQDIIMNSAYQVVKTVSAGN
                     GLSADLHEFQLTPRGTALITAEYPVIVDATSVGGSVKEVVFDSVAQEIDIATGLVVFQ
                     WDSLDHVPLTAGYTSLPNPPKKGKPVVPNGPWDPYDYFHINSVGVDSDGTLLISARNT
                     WAVYKVNHQTGAIIWTLGGKYSSFKLGRGASFAFQHDVRAQAPGGRILSMFDDGAGPP
                     YVHSQSRVLKLRLDLRHRTATVLIQRDHSPPLLSSYEGDAQELPDQDEFVGWGQQPYF
                     SQYDPQGKLVFDGRFVDANISYRAYRFGWSGIPSTPPAVASTRQGRRMTVYVSWNGAT
                     GVATWRVFAGSRPNALRPVATAPRRGFETAIKAAARPYVAVQALGAKGRTLGWSSVSQ
                     VR"
     gene            complement(2049..>3306)
                     /locus_tag="VGN19_12355"
     CDS             complement(2049..>3306)
                     /locus_tag="VGN19_12355"
                     /inference="COORDINATES: protein motif:HMM:NF025627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arylsulfotransferase family protein"
                     /protein_id="HEV7196725.1"
                     /translation="VNALAANLTVQTYNGKPVLSWWQGTVSGTGVTSSGEDVVVDQHY
                     RHVATLKGSGGWVISEHEMVISGGNAWVTAYKTVPMNLTPYGGSANGTLLDSAVQEYD
                     LSTGQLLYTWDALNPGATPNVPLSESQQKPFPGVIWDPYHVNSIQLTGNGTFLVSMRN
                     TWTAYLVNRATNAVVWKVSGNPHNSSFALPAKAQFQWQHDVQLHAGNVLSMFDDACCG
                     FKSATADHVQFATPNGPTRGLVLKLDMTKHTGSFVSQYTRPGNFNAAFLGNTQLLPGG
                     NVALSWGSTPLFSEVSSQGQFLLDAVWPTPDENYRTYVQKWVGTPFFPPSGAVRNNGG
                     KATVYASWDGATQVASWRVLAGSSAGSLKGVASKTKNGFETTIPLTGTFKVYKVQALD
                     AGRHVLGTSNAFPATSSPNSGLPGQY"
BASE COUNT          499 a         1097 c         1164 g          546 t
ORIGIN      
        1 cgaagccctc ggtgaacctc aaccggaagg cgaggtaata agcgagcgcg accaagatcc
       61 catccacgag gagctggggc accgaatggc ggtggacggg gaaggccgcg gatctgatcc
      121 gccggcgcat gcggcggaga ttttagtcgc gatcccgata tctctgagta aggactggct
      181 tagccggcgg ctcaccggac ctgcgagacg ctcgaccagc cgagcgtgcg gcccttggcg
      241 ccgagagcct ggacggccac gtaaggccgg gccgctgcct tgatcgcggt ctcgaacccg
      301 cgtctggggg cggtcgccac gggcctgagc gcattcggcc tcgagccggc gaacacgcgc
      361 caggtggcca cgcccgtggc gccgttccag ctcacgtaga cggtcatcct ccggccctgg
      421 cgggtgctcg ccaccgctgg cggcgtcgac ggaattccgc tccacccgaa gcggtacgcg
      481 cggtagctga tgttggcgtc gacgaaccga ccgtcgaaca cgagcttgcc ctgcgggtcg
      541 tactgactga agtacggttg ctggccccat ccgacgaatt cgtcctggtc gggtagctcc
      601 tgggcgtcgc cctcgtaact ggagagcagc ggcggcgagt ggtcgcgctg gatgagcact
      661 gtcgccgtcc tgtgtctgag gtccaaccgg agcttgagca cgcgcgactg cgagtgcacg
      721 tacggcggcc ccgcgccgtc gtcgaacatg ctgaggatcc ggccgccggg agcctgcgcg
      781 cgaacgtcgt gctgaaacgc gaacgatgcc ccccgtccga gcttgaagct cgaatacttg
      841 cccccgaggg tccagatgat cgccccggtt tgatggttga ccttgtacac cgcccaggtg
      901 ttgcgtgccg agatcagcag ggttccgtcg ctgtcgacgc ccaccgagtt gatgtggaag
      961 tagtcgtaag ggtcccacgg gccgttgggc accaccggct tgcccttctt gggcgggttg
     1021 ggaagcgagg tgtagccggc ggtgagcggg acgtgatcga ggctgtccca ctggaacacc
     1081 accagcccgg tggcgatgtc gatctcctgt gccaccgagt cgaacacgac ctccttgacc
     1141 gagccgccga ccgaggtggc gtcgacgatc acggggtact cggcggtgat cagcgccgtc
     1201 ccccgcggcg tgagctggaa ctcgtgcagg tcggccgaca ggccgttgcc cgcggacacg
     1261 gtcttcacca cctgatacgc gctgttcatg atgatgtcct gcccgttgcc gatgccggcg
     1321 gtctcgttgc cctgccacca ggtcagcaca gggtgcccct gatagctctg cacgcggaag
     1381 tccgtcgccg cgatgtccgt cgggacgggg taaaaccaga tcaggccacc ggtcggaccg
     1441 atgatctcgg gaccctgttg gaacgggccg atctggggtg ccacgaagat gtcgccgccg
     1501 cccccggggt cgggcttggt gatcctgacc gcggccggtg ccaggtccgg gcgcgagcgg
     1561 aagcgccaca cgtcgccctt cacgcgcccc gccgccgggc ggtgcgcgaa cggagccgga
     1621 cccgccgggg tcgccacctg gaactggtag acaccgctgc cagacccctc gaggttcagc
     1681 gaggtgccca cggtcacgac ctcgccggcc gcgaacggcg tggccggcac gaagctcccc
     1741 ccgtccccgt cggagtccgc cagcacgctg cccggatgag cgccgctgac cgagccgctg
     1801 acggtgaccg tccccagctg cgacgccggc agaccgcgga aggtgacctg cgccgtcgga
     1861 gcggcgaagt ggctgcccgg gatcgggaac acggacaccg gtggcggccc ggtcggggcg
     1921 gtggtcgggg aggacccctt cgtcggtggc ttcttcgccg gcgggcgcct ggtcgcagcg
     1981 ctcgcgccgg cgtcaggagc caggcacagc aacgcggcca gacacagtac ccaggccgcc
     2041 cgggtcaact agtactgccc gggcaggcct gaattcggtg agctcgtggc cgggaacgcg
     2101 ttcgacgtgc cgaggacgtg acgcccggcg tcgagcgcct gcaccttgta gaccttgaag
     2161 gtgccggtga gggggatcgt cgtctcaaat ccgttcttgg tcttgctcgc gactcccttc
     2221 aggctgcccg cgctcgagcc ggccaatacc cgccagctcg cgacctgggt tgcgccgtcc
     2281 cagctcgcgt acacggtcgc cttgccgcca ttgttgcgga ccgcgccgct tggcgggaag
     2341 aacggggtgc cgacccactt ctgcacgtac gtgcggtagt tctcgtcggg ggtcggccag
     2401 accgcgtcga gcaggaactg gccctggctc gagacctcgg agaagagcgg cgtcgagccc
     2461 cagctgagcg ccacgttgcc gcccggaagc agctgagtgt tgcccaggaa ggccgcgttg
     2521 aagttgccgg ggcgggtgta ttgactgacg aagctgcccg tgtgcttggt catgtcgagc
     2581 ttgaggacga gtccgcgggt cggaccgttc ggcgtcgcga actgcacgtg gtcggcggtg
     2641 gccgacttga agccgcagca cgcgtcgtcg aacatgctga ggacgttgcc ggcgtgcagc
     2701 tggacgtcgt gctgccactg gaactgggcc ttcgccggca aggcaaagct gctgttgtgc
     2761 gggtttccgc tcaccttcca gacgacggcg ttggtcgcgc ggttgaccag gtaggccgtc
     2821 caggtgttgc gcatcgagac gaggaacgtc ccgttgccgg tcagctggat ggagttgacg
     2881 tggtaggggt cccagatgac ccccgggaac ggcttctgct gggactccga cagcgggacg
     2941 ttcggggtgg cgcccggatt cagggcgtcc catgtgtaga gcagctgacc ggtgctcagg
     3001 tcgtactcct ggaccgccga gtcgagcagc gtgccgttgg ccgacccgcc gtacggggtc
     3061 aggttcatcg ggacggtctt gtacgcggtg acccacgcgt tccccccgct gatgaccatc
     3121 tcatgctcgg agatgaccca accgcccgag cccttcagcg tggccacgtg ccggtagtgc
     3181 tggtcgacga ccacgtcctc gccgctgctg gtgacccccg tgccactgac cgtgccctgc
     3241 caccagctca gcacgggctt gccgttgtag gtctgcaccg tgaggttcgc cgccagcgcg
     3301 ttcacg
//
LOCUS       DASYFY010000605         1876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1883024, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000605 DASYFY010000000
VERSION     DASYFY010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1883024"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..115
                     /locus_tag="VGN19_12360"
     CDS             <1..115
                     /locus_tag="VGN19_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012398142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="recombinase XerC"
                     /protein_id="HEV7196726.1"
                     /translation="RAVQELLGHATLATTQIYTHVSVERLKATYEQAHPRA"
     gene            108..1103
                     /gene="whiG"
                     /locus_tag="VGN19_12365"
     CDS             108..1103
                     /gene="whiG"
                     /locus_tag="VGN19_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019523277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor WhiG"
                     /protein_id="HEV7196727.1"
                     /translation="MPDVEVAVNPQTDAPGETEAAEGAGTVTETATAPNAPAAPTAPR
                     AAAQRAGDADGVEEPPAVEEPVAEEPEDAVAANAAAIAELWRQYKTEGDPAVREKLIL
                     HYSPLVKYVAGRVGVGLPPNIEQADLVSYGIFGLIDAIEKFDIERAIKFETYAISRVR
                     GAIIDELRAIDWIPRSVRHKAREVERAYAELEGELHRTPTEAEVAGRMGIKVGDLHHI
                     FSQVSYVNVVALDELLSVGGEKGDSLTLGDTLEDKGADDPVLAFEGEETKYLLARAIN
                     QLPEREKIVVTLYYYEGLTLAEIGQVLGVTESRICQMHTKAVLQLRGKIAEVTAG"
     gene            complement(1090..1635)
                     /locus_tag="VGN19_12370"
     CDS             complement(1090..1635)
                     /locus_tag="VGN19_12370"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013770674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEV7196728.1"
                     /translation="MVREMLLALVATITPAVPSTPWDAGAQPPAVAVASWGWPLDPRP
                     AVARPFRAPPTPWSAGHRGVDLVSEVGQVVRSAGEGTVTFAAVLAGRGVVVVAHPGGL
                     RTSYEPVDARVRVGTVVQRGQALGVLASTPGHCSPVYCLHWGLRRGDTYLDPLSLLQP
                     APPVLLPLWAASIRGLRLSPP"
BASE COUNT          322 a          638 c          690 g          226 t
ORIGIN      
        1 gagagcagtt caagaactgc tcggtcacgc tacgctcgcc acgacccaga tttacacgca
       61 tgtatccgtc gagaggctga aggcgacata tgagcaggcg cacccgcgtg cctgatgtgg
      121 aggtcgcggt caacccgcag accgacgctc cgggcgagac ggaggcagct gagggcgccg
      181 gcacggtcac cgagacagcg accgcaccga acgcaccggc agcaccgacc gcaccgcgag
      241 ccgcagcgca gcgcgcaggg gacgcggacg gcgtcgagga gccgcctgcg gttgaggaac
      301 ctgtcgcaga ggagccggag gacgcggtcg cggccaacgc cgcggcgatc gctgagctct
      361 ggcgccagta caagaccgag ggcgacccgg cggtccgcga gaagctgatc ctgcactact
      421 cgccgctggt caagtacgtc gccggccgag tgggtgtcgg cctgcccccg aacatcgagc
      481 aggccgacct ggtgtcgtac ggcatcttcg ggctgatcga cgcgatcgag aagttcgaca
      541 tcgagcgcgc catcaagttc gagacgtatg ccatctcgcg ggtgcgcgga gcgatcatcg
      601 acgagctgcg cgcgatcgac tggatcccgc gctccgtgcg gcacaaggca cgagaggtgg
      661 agcgggccta cgccgagctc gagggcgagc tgcaccgcac gcccaccgag gcggaggtcg
      721 ccggccggat ggggatcaag gtcggggacc tgcaccacat cttcagccag gtgtcctacg
      781 tgaacgtcgt ggcgctggac gagctgctca gcgtcggcgg cgagaagggc gactcgctga
      841 cgctcggcga caccctcgag gacaagggcg ctgacgaccc ggtgctggcc ttcgagggcg
      901 aggagacgaa gtacctgctc gcccgcgcga tcaaccagct gcccgagcgc gagaagatcg
      961 tcgtcacgct ctactactac gagggcctga ccctggcgga gatcggtcag gtgctcggcg
     1021 tcaccgagtc acgcatctgc cagatgcaca ccaaggccgt cctgcagctg cgcggcaaga
     1081 tcgccgaggt cacggcgggc tgagccgcag cccccggatg ctggccgccc acagcggaag
     1141 cagcaccggt ggggccggct gcagcaggga gagcgggtcc aggtaggtgt cgccccggcg
     1201 cagcccccag tgcaggcagt agacagggga gcagtggccc ggggtggaag ccaggacccc
     1261 gagagcctgc ccgcgttgca cgaccgtgcc cacgcgcacc cgtgcgtcga ccggctcgta
     1321 gctcgtgcgc aggccacccg gatgggccac cacgacgacg ccgcgaccgg ccagcacggc
     1381 ggcgaaggtg accgtgccct caccggccga gcgcaccacc tgccccacct cggagaccag
     1441 gtcgaccccg cggtgcccgg cgctccacgg cgtggggggt gcgcggaacg gccgggcgac
     1501 cgcggggcgt ggatcgagag gccagcccca ggaggccacc gcgaccgcag gcggctgggc
     1561 acccgcgtcc cagggtgtac tgggcaccgc aggggtgatc gttgcgacca gtgccaggag
     1621 catctctcga accatgggtc cagcctccgt ggcggagcca gggcacggaa gcaccggcgg
     1681 ctcctctgtg gagggtggga cgcgcggacc gcctgtggat cgtgcaccgc cggggaagag
     1741 gccggccctg tggatgacgt gtcgtgccgc ccgagcctct cgtaggctgg ctcgatgatc
     1801 accgtcgtga ccggtggcag ccgcggcatc ggcgctgccg tctgcgagcg gctcgcggct
     1861 gacggccacg acgtcg
//
LOCUS       DASYFY010000606         1819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_307105, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000606 DASYFY010000000
VERSION     DASYFY010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307105"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1017
                     /locus_tag="VGN19_12375"
     CDS             199..1017
                     /locus_tag="VGN19_12375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009082425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7196729.1"
                     /translation="MNTTTSRTTQIVTSADGTEIAYEVSGTGPALVLVDGAMCQRAMG
                     PARSLAAELAGRFTVLVYDRRGRGESGPGATAWSMEREVEDLLAVLEAAGGRAHVLGV
                     SSGATLALEAARRGAPIDRLAVYESPFILDDTRPANDPRLSEQVQAMVDAGRRGDAVK
                     TFLRTVGAPTPVVLMMRFMPPWKKMTAVAHTLPYDLSIVSTHQQGRPLPAGYYDAVAC
                     PTLVLAGGKSPAYMRNAQATIAAAVPNAHLETLPGQTHMVKAKVVAPVVTSFLE"
     gene            complement(1051..>1819)
                     /locus_tag="VGN19_12380"
     CDS             complement(1051..>1819)
                     /locus_tag="VGN19_12380"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196730.1"
                     /translation="AASLISRADDHPVTDAILDAAVDQLQRRFPDLRVSAQATTGTAA
                     QDLTCASAHAREIVLGSHGRSQSRLPLGSVAHAVAMHAACPVVVVRQSGNPEARTGPV
                     VVGVDGSELSLSAVDFALEQAARRGTSMIAIHAWWVEFVDGVVVTTPGSAQWQKAAER
                     MRLDVAETLAGCRERYPDVDVSVRLEQARPADALVEASEYASLVVVGARGHGGFAGLL
                     LGSVSRELLMHAAGPVAVARSAPPIRGSRTHPAESQP"
BASE COUNT          293 a          640 c          634 g          252 t
ORIGIN      
        1 agcgtccgcg gcgacctgct cgcgcgcgat ggtcgtccac tagaggccgc cgcctgcttt
       61 cgcgaggcag cgagcaggac ccgcaacgag agggagcgca cgctgttgct ggggagggtg
      121 gacgacccct tggccctgta gaaatcccgg acccccgtac gacgcatgag tgtgaacagc
      181 acaccccagg aggcagccat gaacaccacc accagtcgca ccacccagat cgtcacgtcc
      241 gccgacggca ccgagattgc ctacgaggtc agcggcacag gccccgcgct ggtcctcgtt
      301 gacggagcga tgtgccagcg tgcgatgggt ccagcccgca gcctggcggc cgagctggcc
      361 ggccgcttca ccgtcctggt ctacgaccgg cgcggtcgcg gcgaaagcgg cccaggggcc
      421 acggcttggt ccatggaacg cgaggtcgag gacctcctcg ccgtgctcga ggcggccggc
      481 ggccgggctc acgtcctggg ggtctcctcc ggcgcgaccc tcgccctgga ggcggcgcgc
      541 cgcggtgcgc ccatcgaccg gcttgccgtc tacgagtcgc cattcatcct cgacgacacc
      601 cgcccggcca acgacccacg tctgtccgag caggtccagg cgatggtgga cgcaggccgc
      661 cgcggcgatg cagtgaaaac gttcctgcgc acagtcggcg cccccacccc ggtcgtcctg
      721 atgatgcggt tcatgccgcc ctggaagaag atgacggcag tggcgcacac actgccctac
      781 gacctctcga tcgtcagcac gcaccagcag ggccgacctc tgcccgctgg ctactacgac
      841 gccgtcgcct gcccgaccct ggtcctcgcc ggcggcaaga gccccgcgta catgcgcaac
      901 gcgcaggcga cgatcgccgc cgcagtgccc aatgcccacc tcgagaccct ccccggccag
      961 acccacatgg tcaaagcaaa ggtggtcgca cctgtggtca ccagcttcct ggagtagggg
     1021 cggcttgcga ctggtcgaca ggcggtgcgt tcagggctgt gactccgctg ggtgggtcct
     1081 tgaccccctg atgggtgggg ctgatcgcgc gactgcgacg ggtccggcag cgtgcatgag
     1141 cagttctcgg ctcaccgagc cgaggaggag cccggcgaag cccccatggc cccgtgcgcc
     1201 gaccacgaca agggatgcgt actcggaggc ctcgacgagg gcatcggctg gtcgggcctg
     1261 ttcgaggcgg acggacacgt cgacgtccgg gtagcgctcc ctgcagccgg ccaaggtctc
     1321 ggcgacgtcg agccgcatcc gttccgcggc cttctgccat tgcgccgagc ctggagtcgt
     1381 gacgacgacg ccgtcgacga actcgaccca ccaggcgtga atcgcgatca tcgacgtccc
     1441 gcggcgtgct gcctgttcca gggcaaagtc gacggcgctg agggagagct ccgacccgtc
     1501 cacgccgacg accaccggtc cggtccgggc ctcggggttg ccggattggc gaacgacgac
     1561 gaccgggcag gccgcgtgca tggccacggc gtgcgctacg gagccgagcg gaagacggga
     1621 ctgcgaacgt ccgtgcgagc ccagcacgat ctcgcgggcg tgggctgagg cgcaggtgag
     1681 gtcctgggcg gccgtacccg tggtcgcctg agcagagacg cgcagatcag gaaagcgtcg
     1741 ctggagctga tcgacggcgg cgtcgaggat ggcgtcggtg accgggtgat cgtccgcgcg
     1801 actgatcaac gaagccgcg
//
LOCUS       DASYFY010000607         3102 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_43847, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000607 DASYFY010000000
VERSION     DASYFY010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43847"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..2942
                     /gene="gcvP"
                     /locus_tag="VGN19_12385"
     CDS             63..2942
                     /gene="gcvP"
                     /locus_tag="VGN19_12385"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HEV7196731.1"
                     /translation="MSAFSTGLSEFTGRHIGPAESDIAAMLDVVGHDSLDALTDHALP
                     GAIRSEGPLRIDAAASEAAVVEELRALARRNQVMTSMIGLGYYGTRTPAVVQRNVLEN
                     PAWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLDTAGASLLDEATAAAEAMTLMRR
                     TSKAPAGAVLLVDRHAFPQTIEVIRTRALPLGLEVVVANLDGVDSAAALRDAAGDRDS
                     FGVLVQYPGGDGELRDWRALTAAAHEVGALVTAAADLLALTLVTAPGEWGADVAIGTS
                     QRFGVPMGFGGPHAGYMSVRSGLERSLPGRLVGVSVDAEGAPAYRLALQTREQHIRRE
                     KATSNICTAQVLLAVMASMYAVYHGPAGLAAIARRTHAHAKALADGLSDGGVEVTSRD
                     YFDTLTVSVPGRADEVLAQAAQRGVNLWRVDADTLSLSVDETTDLRDLDAVWAAFGVA
                     GRTEVPLSEPAWPSNLLRTSAYLTHPVFHSHHSETSMLRYLRRLSDRDFALDRGMIPL
                     GSCTMKLNATTEMVSVTWPEFADLHPFAPSHQTEGIRELISDLSAWLCEITGYDAVSL
                     QPNAGSQGEFAGLLAIHAYHEANGQSRRRICLIPASAHGTNAASAVMAGMKVVVVKTA
                     PGGDIDMDDLRAKVEQHRDDLAAIMVTYPSTHGVFEDTITELCALVHDAGGQVYVDGA
                     NLNALVGLARPGKFGADVSHLNLHKTFCIPHGGGGPGVGPVAVRAHLAPHLPNHPLVP
                     EAGPETGVGPISAAPFGSASILPISWAYVRLMGGAGLTRATQVAVLNANYIAARLREH
                     YPVLYSGHDGVVAHECILDLRELTRRSGVTVDDVAKRLVDYGFHAPTMSFPVAGTLMV
                     EPTESEDRYEIDRFCDAMIAIRREIGEVESGEVAVADSMLRNAPHTAKALAGKWEYPY
                     ERSDAAFPVGVHAPDKYWPPVARIDGAYGDRNLVCSCPPPEAFES"
BASE COUNT          469 a         1092 c         1050 g          491 t
ORIGIN      
        1 cggcctcgtt gtcgtgacag aaggggaggc aaaccgagca aagccccacg ttcaggagcc
       61 tcatgtccgc cttctccact ggcctttccg agttcaccgg tcgtcacatc ggccccgctg
      121 agtccgacat cgccgcgatg ctcgacgtcg tgggccacga ctcgctcgac gcgctgaccg
      181 accacgcctt gcctggtgcc atccgcagcg agggcccact gcgcatcgac gccgcggcgt
      241 ccgaggcagc cgtcgtcgag gagctgcggg cactggctcg ccgcaaccag gtgatgacgt
      301 cgatgatcgg cctcggctac tacggcactc gaacccccgc cgtggtgcag cgcaacgtgc
      361 tggagaaccc cgcctggtac acggcataca cgccgtatca gcccgagatc tcgcaggggc
      421 gcctcgaagc gttgctcaac ttccagaccg tggtgagcga cctgacgggg ctcgacaccg
      481 cgggggcctc cctgctggac gaggccaccg ccgcggccga ggcgatgacg ctgatgcgcc
      541 gcaccagcaa ggcaccggcc ggggcggttc tgctcgtgga ccggcatgcc ttcccgcaga
      601 cgatcgaggt gatccggacc cgcgcgctgc cactcggctt ggaggtcgtc gtggccaacc
      661 tcgacggggt cgactccgct gccgccctgc gtgacgcggc gggcgaccga gacagcttcg
      721 gcgtcctggt ccagtacccg ggcggcgacg gcgagctgcg ggactggcgc gcgctcacgg
      781 ctgccgctca cgaggtcggt gctctggtca ccgcagccgc ggatctgctc gcgctgaccc
      841 tggtgactgc gccaggggag tggggtgccg atgtcgccat cggcaccagc cagcgcttcg
      901 gcgtgccgat gggcttcggt ggcccccacg cgggctacat gagtgtgcgt tcgggtttgg
      961 agcgctccct gcccggtcgg ctggtcggcg tgagcgtcga cgccgaaggg gcaccggcat
     1021 accggcttgc gcttcagacg cgcgagcagc acatccgccg tgagaaggcg acctcgaaca
     1081 tctgcaccgc ccaggtgctc ctcgcggtga tggcctcgat gtatgccgtt taccacggcc
     1141 ccgccggcct ggcggcgatc gcgcgacgca cccacgctca tgccaaggct ctcgccgacg
     1201 gtctgagcga cggcggcgtc gaggtcacca gtcgcgacta cttcgacacc ctgacggtct
     1261 ccgtaccggg ccgagccgac gaggtgctcg ctcaggcggc gcagcgcggg gtcaacctgt
     1321 ggcgggtcga cgccgacacc ctgtcgctca gcgtcgacga gacgacggac ctgcgcgacc
     1381 ttgacgcggt ctgggctgcg ttcggtgtcg ctggccgcac agaggtcccg ctcagcgagc
     1441 cggcttggcc ttcgaacctg cttcgcacca gcgcatacct cacgcacccg gtgttccaca
     1501 gccaccactc cgagacctcc atgctgcgct acctgcgacg gctgtccgac cgcgacttcg
     1561 ccctcgaccg cggcatgatc ccgctcggct catgcacgat gaagctcaat gcgacgaccg
     1621 agatggtgtc ggtgacctgg ccggagttcg ccgacctgca cccgttcgcg ccgtcccacc
     1681 agactgaggg aatccgcgag ctcatcagcg acctgtcggc gtggttgtgc gagatcaccg
     1741 ggtacgacgc ggtgtcgctg cagccgaatg caggatcgca gggtgagttc gccggtctgc
     1801 tcgcgatcca cgcgtaccac gaggcgaatg gtcagtcccg ccgtcgcatc tgcttgatcc
     1861 ccgccagcgc ccacggcacc aacgccgcga gtgcggtcat ggccgggatg aaagtcgtcg
     1921 tggtcaagac cgctcccggt ggtgacatcg acatggacga cctgcgcgcc aaggtcgagc
     1981 agcaccgtga cgacctggcg gcgatcatgg tgacgtaccc ctcgacccat ggtgtcttcg
     2041 aggacacgat caccgagctc tgtgcactgg tgcacgacgc aggtggtcag gtgtacgtcg
     2101 acggcgcgaa cctcaacgcc ctcgtcgggc tggccaggcc cggcaagttc ggggcggacg
     2161 tctcgcacct gaacctgcac aagaccttct gcatccccca cggtgggggc ggccctgggg
     2221 tgggaccggt cgcggtgcgc gctcacctgg caccgcacct gcccaaccac ccgctggtgc
     2281 ccgaggccgg accggagacc ggggttggtc ccatttcggc ggcgccgttc ggttccgcga
     2341 gcatcctgcc catctcctgg gcttacgtgc gcctgatggg cggagccggt ctgactcggg
     2401 ccacccaggt cgcggtactc aacgccaact acatcgctgc tcggttgcgt gagcactacc
     2461 cggtgctcta ctccggccac gacggggtcg tggcccacga atgcatcctg gacctgcgcg
     2521 agctcaccag gcgtagcggg gtcacggtgg acgatgtcgc caagcggctc gtcgactacg
     2581 gcttccatgc cccgaccatg tcgttcccgg tggctggcac tctgatggtc gagcccaccg
     2641 agagcgagga ccgctacgag atcgaccggt tctgcgacgc catgatcgcc atccgtcggg
     2701 agatcggtga ggtcgagtcg ggtgaggtcg cggtggccga cagcatgctg cgcaacgcgc
     2761 cgcacaccgc caaggcgctg gccggcaagt gggagtaccc gtacgagcgg tctgatgccg
     2821 ccttccccgt gggcgtgcat gcgccggaca agtactggcc tccggtggcc cggatcgacg
     2881 gcgcgtacgg cgatcggaac ctcgtctgca gctgcccgcc gccggaagcc ttcgagagct
     2941 aaggctgcgg gatgggtcag gctgccggcg cggcgatgtc gacgccgagc agcctgacct
     3001 gagaccctcg ctcgctcttg tcgacgacga tctgagcggg gatgcggctg cggagctcgg
     3061 cgacgtggct gacgactccg acagcgcggc cgccctcgcg ca
//
LOCUS       DASYFY010000608         3772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_831958, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000608 DASYFY010000000
VERSION     DASYFY010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3772
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_831958"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..>3772
                     /locus_tag="VGN19_12390"
     CDS             233..>3772
                     /locus_tag="VGN19_12390"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEV7196732.1"
                     /translation="MRVTTIAARNYLPFARQLASSFRRHNPEDSFTILLVDAEPGEVA
                     DTDDFTVATPADLPLSPAEFKRMALLYDVTELSTALKPWALEMLLEQGAETAVYLDPD
                     IFVYDNLAEIERLSLEHGIVLTPHGVTPMPRDGLRPSEADIMGSGIYNLGFIAVGQRN
                     RDMLQWWQERLRRDSISAPDQMLFTDQRWIDLVPGYWHAAILRDPGYNVAYWNLENRP
                     VTKKGEQVLVDGQPLRFFHFSGYRPDKPWILSKHAGERPRVLLSEVPVVRELCDGYGA
                     RVRESLRSQGEPAAYRFNTLSDGTEISRGMRRTYRAEVVASDTGKADLPPVPFLDDTE
                     LVRWFMEPAKGAPVGRLLRGIWESRPDLQRAFPHGLTRDAGALLAWARTSGVREGEIP
                     AHFLTWQPSPQSLPTPPRSTDERGLNLAGYFRAELGVGQSGRLLVEAVKQAGLPHSTL
                     LSNRTLSRTRAEFGDTGDDLRYPINVAVVNADQFGLWRDDVGEDLFQDRYTVGVWAWE
                     VEEFPEVYDFALDLVDEIWAVSGFVRDAIAARTDRPVYVFPHPIPVPQLETGPSLDRA
                     ALGLSDLPYFLFVFDYLSVFERKNPLAVVEAFRKAFPEPGQAQLVVKSINGDRCRIDR
                     ERLRLACEGRADIVLVEEYLDKDTVDALMRGAAAYVSLHRSEGYGLTLSESMALGRPV
                     IATGYSGNLDFMDQDNSLLVPSTLVPVAPGSGPYPPTTRWADPDTDAAAALMRRVIEE
                     PAWAEEIGQRARRSVELGGSLERAATFVTERVDAIMAQRPWHHDTMVALTPVPDAAEA
                     LAADATTAAAIEQARALVHTPPNVDSPSRSPKVTRRLRQLTYRLLAHHDEEVNRRLDA
                     VIEAVDATHRAAQSAPPEAAAAAVGADDLDQLEARLAARFQAHAGALDEQRAAIEAQS
                     HRQDVLTDRVDQQNALREELGAGLSHLSERVDQDNALREELATGLRHLGERVDQGNAL
                     REELATGQRQLGTRVDDLSLRLDGVDQELAAVPFTAAGTGLRLQDANGGHLGFTAEAD
                     ASYAGFEDIFRGSEEFVRDRLRPYVDLIHGHGPVLDVGCGRGELLTLLTKSGLDATGV
                     DLDASMLDRARDAGLTVTLGDAVEYLRRLPDRSLGTVVSIEVVEHLSVETMRAFFAES
                     ARVLTEGGLFVAETVNPHSPAALKTFWLDLTHVR"
BASE COUNT          591 a         1327 c         1280 g          574 t
ORIGIN      
        1 acgagctccg tgatcagttc tcgacgaaga cgctgctgcg ccggttgcaa ggagcgtggg
       61 gcggtcaagg atctcctccg actgatgttc ctccgggccg cccggagcgg ccccggtcac
      121 cctactccga cacccctttc cttgacgtat gcctgcgacg tccaacggta aggtcttgcc
      181 tcggcggctt gacgaggtga gccaccgaga ctgagaggat cgggggtctt tggtgcgcgt
      241 gaccactatc gccgcgagga actacctgcc gttcgcgcgg cagctggcga gctccttcag
      301 gaggcacaac cctgaggaca gcttcaccat cctcctggtg gatgccgagc ccggcgaggt
      361 ggcagacacc gacgacttca ccgtcgcgac tcccgcagac ctcccgctct cgcccgcgga
      421 gttcaagcgc atggcgctgc tctacgacgt gacggagctg tccacagcgc tcaagccgtg
      481 ggcgctggag atgttgctcg agcagggcgc cgagacggcc gtctatctcg accccgacat
      541 cttcgtctat gacaacctcg ccgagatcga gcggctgtcc ctcgaacacg ggatcgtgct
      601 gaccccgcat ggggtcaccc cgatgccacg ggacggcctg cgcccgtccg aggccgacat
      661 catgggttcg ggcatctaca acctgggctt catcgctgtg ggtcagcgca accgcgacat
      721 gttgcagtgg tggcaggagc ggctccggcg cgactcgatc tcagccccgg accagatgct
      781 gttcaccgac cagcggtgga tcgacctggt ccccgggtac tggcacgccg cgatcctgcg
      841 cgacccgggc tacaacgtcg cgtactggaa cctcgagaac aggccggtca ccaagaaggg
      901 cgagcaggtc ctggtcgatg gccagccgtt gcgcttcttc cacttcagcg gataccggcc
      961 cgacaagccc tggatcctga gcaagcacgc gggcgagcga ccccgcgtcc tgctcagtga
     1021 ggtccccgtg gtccgagagc tctgcgacgg gtacggggcc cgggtccggg aaagcctgcg
     1081 cagccagggc gagccggcgg cataccggtt caacaccctg tcggacggca ctgagatctc
     1141 gcgaggcatg cgccggacgt accgtgccga ggtcgtcgcc tcggacaccg gcaaggccga
     1201 cctgccgccg gtcccgttcc tggacgacac cgagctcgtg cgctggttca tggaacccgc
     1261 caagggcgca cccgtggggc ggctgctccg gggaatctgg gagtcgcgcc ctgacctgca
     1321 gcgtgcgttt ccgcacggcc tgacccgcga cgccggcgcc ttgctggcct gggcgcgcac
     1381 ctcgggcgtg cgggagggag agatccccgc gcacttcctg acctggcagc cgtcgccgca
     1441 gagccttccg acgccaccga ggtcgaccga cgagcgcggg ctcaacctcg ccgggtactt
     1501 ccgcgccgag ctgggcgtcg ggcagagcgg acggctcctg gtcgaggcgg tcaagcaggc
     1561 cggcctcccg cactcgaccc tgctctcgaa ccgcacgctc agccgaaccc gagccgagtt
     1621 cggcgacacc ggggacgact tgcggtaccc catcaacgtg gccgtcgtga acgccgacca
     1681 gttcgggctg tggcgtgacg acgtcggcga ggacctcttc caggaccggt acacggtggg
     1741 cgtgtgggcg tgggaggtcg aggagttccc cgaggtctat gacttcgccc tcgacctggt
     1801 cgacgagatc tgggccgtct cgggattcgt ccgtgacgcg attgcagccc ggaccgaccg
     1861 gcccgtgtac gtgttcccgc acccgattcc cgtgccccag ctcgaaaccg ggccgtccct
     1921 ggatcgcgca gcactgggtt tgtccgacct gccgtacttc ctgttcgtgt tcgactacct
     1981 cagcgtcttc gagcgcaaga accccctcgc ggtggtcgag gcgttccgga aggccttccc
     2041 cgagccaggg caggcacagc tggtcgtgaa gagcatcaac ggcgaccgct gtcggatcga
     2101 ccgtgagcgg ctccggctgg cgtgcgaggg ccgggcggac atcgttctcg tcgaggagta
     2161 cctcgacaag gacaccgtcg acgcgctgat gcgcggcgcc gcggcatacg tgtcattgca
     2221 ccgttcggag ggctacggcc tcacgctgtc ggagtcgatg gcgctgggcc gacccgtcat
     2281 cgcgacgggg tactcaggca acctcgactt catggaccag gacaacagcc tgctggttcc
     2341 ctcgacgctg gtgcccgtcg ctcccggatc ggggccgtac ccgcccacca cccgctgggc
     2401 cgacccggac accgacgcgg cagctgcgct catgcgtcgc gtcatcgagg agcccgcctg
     2461 ggccgaggag atcggtcagc gggcgcgtcg ctcggtcgag ctcgggggct ccctggagcg
     2521 cgccgccacg ttcgtgaccg agcgagtcga cgcgatcatg gcccagcgcc cctggcacca
     2581 cgacaccatg gttgccctca ctccggtccc tgacgccgcg gaggccctgg cggcagacgc
     2641 aacgacggcg gcggccattg agcaggcgcg agcgctggtc cacacgccac cgaacgtcga
     2701 ctcaccgagc cgctcgccca aggtgacccg gcgactgcgg cagctcacct accgcctgct
     2761 tgctcaccac gatgaagagg tgaaccgacg cctggacgcg gtgatcgaag cggtcgacgc
     2821 gacccatcgc gcagcgcaga gcgcgccccc ggaggcggcc gctgccgcag tcggcgccga
     2881 cgatctggac cagctcgaag cacggctcgc ggcccggttc caagcccacg ccggggcgct
     2941 ggacgaacag cgagccgcga tcgaggcgca gagtcaccgc caggacgtgc tgaccgaccg
     3001 ggtcgaccag cagaacgcgc tgcgcgagga gctgggcgcc ggtctcagtc acctcagcga
     3061 acgggtcgac caggacaacg cgctgcgcga ggagctggcc accggtcttc gccacctcgg
     3121 cgagcgggtt gaccagggca acgccctccg cgaggagttg gcgaccggcc agcgccagct
     3181 cgggacccgc gtggacgacc tcagcctgcg gctggacgga gtggaccagg agctcgcggc
     3241 ggtcccgttc accgcggcag gcaccggcct gcgccttcag gacgccaacg ggggtcacct
     3301 gggtttcact gccgaagcgg acgcctcgta tgccgggttc gaagacatct tccgcgggtc
     3361 cgaggagttc gtccgcgacc ggctgcgtcc ttatgtcgac ctgatccacg ggcatgggcc
     3421 agtcctcgac gtgggttgcg gacgcggcga gttgctgacg ttgctgacca agagcggact
     3481 agacgccacc ggcgtcgacc tcgacgccag catgctggac cgggcgcgcg atgccgggct
     3541 cacggtgacc cttggcgacg ccgtcgagta cctgcgcagg ctgcccgacc ggtcgctggg
     3601 caccgttgtg tccatcgaag tagtggagca cctgtccgtg gagaccatgc gagccttctt
     3661 tgccgagtcc gctcgcgtgc tgaccgaggg tggcctgttc gtggccgaga cggtgaaccc
     3721 ccactcgccg gcagccctga agacgttctg gctggacctc acgcacgtcc gc
//
LOCUS       DASYFY010000609         4747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1412139, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000609 DASYFY010000000
VERSION     DASYFY010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1412139"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VGN19_12395"
     CDS             <1..344
                     /locus_tag="VGN19_12395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEV7196733.1"
                     /translation="ETTRVMDAYFAALGTGQFNQFFTDDVTWTTIQNNEQVCGAQAVE
                     AAINGLHARMSDLQTRQLVVSNGFAYLEGSCAGKDEARIPYCVAYEFAGDRIAAMRAF
                     GEIATFMPTPE"
     gene            complement(632..931)
                     /locus_tag="VGN19_12400"
     CDS             complement(632..931)
                     /locus_tag="VGN19_12400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196734.1"
                     /translation="MSSLTAIRRVAAAGGVAGLIALCLAGPSAARPDPGTGDLPRCTS
                     GCYHGGTDPSGGPTADTNTVEYIQLGAGVLAGIALTGFGVAVTSRRGHGQVAHPA"
     gene            1081..>4747
                     /locus_tag="VGN19_12405"
     CDS             1081..>4747
                     /locus_tag="VGN19_12405"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEV7196735.1"
                     /translation="MGIGVLGPLEVDRAPVNLGTRDRVVLQALALRHGSAVTADALAE
                     SIWGESLPRTWPKVVQGCIVRLRHLLGADAIETTDHGYVLRAHVDHLDARRFEQLVAR
                     ARELLRAGEAERASFLLAEALGLWRGEPFPDLQSWEPARAESERLNELRREAEDLRVE
                     ALLRAGQHDAVRGLAQQLVRDAPFREHRWALLALAQYRAGQQHDALRTLQKARAVLAA
                     ELGLDPSQELAELEEAILRQDASLAAKAALPEPSRVCPYPGLVAYGVADAPTFYGREE
                     VTAACLRRLDEVQTLAVAGPSGCGKSSLARAGVAAALEHDGHRVFVITPGTHPMSALA
                     GVGSRPGTVLVVDQCEEALALADGSPERIEFFAALVEFSQRHSLVITMRADRIGELAP
                     HRDFATLVERGLYLLGPMAQTDLRVAIEGPAAQAGLRLEPGLVDLLVREVAGEPAALP
                     LVSHVLRQTWRNRQGNTLTVQGYAATGGVRAAVAQSAEGVFRGLDHGHQATLRDLMLR
                     LVAPDEGGEPVRTRVPRRSVTGDQDRVRLVEQLLAARLLATDGDSIEIAHESLAVAWP
                     RLRSWLDEDIDGARTLRHLTVASESWDHLGRPDSELYRGVRQARATEWHQRAGATLTD
                     TERDFLKASAALADKEQRATEAQVQRERQLNRRLRAGLAVVVALLAVALVTGAIAKTA
                     ANRADQQARAADARRLGAEALRSDALDQSLLLAAAGVTLDDSVDTRNYLLATLGRVKA
                     LVASARSPQQVVSLSVNTGTGQVAAIALGGVGLELYDGRTLRPVSLPRSLPGASVSAS
                     PDGRRYAMSVRGDLVQDGTEPPVLLLDPNGARSAVQLGGFPSGYFVFDNLGFGPISPD
                     NMEFSANSRWLAVAMRDLAGRRPDTTVVWDLRSPGRPVAMVHLGEVRAPTVSPDGHTL
                     YSVSTQKRRLQVTDLPSGRTRRTLGARDLGVRQLDDILVESRDARMLALGAGVEAVVL
                     DRATLKPRAYLAGQGQTTGLAFSPDDTQVAASGEHLMVWEIHGHDVVKVLVQDGQMDH
                     PSFSRDGRTLYTRTYSGLVQEWDLAGDRRFLTARAGDPLSWSEPGPRISPDDRTIGYV
                     TLGPEFRIRDVATGRLGPVVPGGMAQGRFLDIAWHPDSKTVNITSGDPLVRTWDSTTG
                     RLIAERRLAPAPSTEGAAIAFFSVNGKYLLVGTTAGRLHVLNARTLVPARAPIQVYKQ
                     KTGEQQSKEVFVFSPSGD"
BASE COUNT          751 a         1704 c         1603 g          689 t
ORIGIN      
        1 aagagaccac ccgcgtcatg gacgcctact tcgcagctct cggtaccggc cagttcaacc
       61 agttcttcac cgacgacgtg acgtggacga ccatccagaa caacgaacag gtatgcggcg
      121 ctcaagccgt cgaggcggcc atcaacggct tgcatgcccg catgtcagac ctgcagacac
      181 gtcaactggt cgtcagcaac ggcttcgcct acctcgaagg gtcctgtgcc ggcaaggacg
      241 aggcccgaat cccctactgc gttgcctatg agttcgcggg cgaccgaatc gccgcgatgc
      301 gcgcattcgg cgaaatcgcc accttcatgc ccacacccga ataggcggag accgccgcgg
      361 cagaacgcaa tccgagcccg accgtcgccg ccgtagaagc ccaccttcca gcacgccatc
      421 gaccaaacct gactcccttg agccccacca gcacgccacg tcgcgccgcg tcatttcgcc
      481 gcgactggac cgggacacat cggagtttct cgacaagtgc gtagcgtccc ggacctgcct
      541 gcgccggccg cgtgagcgag ggtttgcctt ggttggctcc cgcagacacg gcccggcgct
      601 ctgcggagca cgccgagccg cgttgcgcac ttcacgccgg gtgtgcgacc tgcccgtggc
      661 cgcggcgtga ggtgacggct accccgaagc cggtcagagc gatcccggcc agaactccgg
      721 ctccgagctg gatgtactcg acggtgttgg tgtctgccgt cggccccccg ctgggatccg
      781 tgccaccgtg gtagcagccg gacgtgcagc gaggcaggtc tcccgtccct gggtcgggtc
      841 gggccgcgga gggcccagcg aggcaaagtg cgatgagacc ggcgacgcca ccggcggcgg
      901 ctacgcggcg aatcgcggtg agtgaagaca tgtttctgcc cttcttcctc cctgctccct
      961 ggtgagccgg ctggctctga atccgttatg aagcacgccg gttccagctg ggtgcggagg
     1021 tggtaacacc gcagtaacgc ggtggttgac gccgcctggg gacagatgga ccgtcgtctc
     1081 atgggcatcg gcgtcctcgg gccgcttgag gtggaccgtg ctcccgtcaa cctcgggacg
     1141 cgcgaccgcg tagtgctcca ggcactcgcg ctgcggcacg gctccgccgt cacggcggac
     1201 gccctggccg agtcgatctg gggcgagtcc ctgccgcgta cctggccgaa ggtcgtccag
     1261 ggctgcatcg tccggctgcg ccacctgctc ggagcggacg cgatcgagac caccgaccac
     1321 gggtacgtcc tacgggcgca tgtcgaccac ctcgatgctc ggcgcttcga acagctcgtg
     1381 gcacgggcga gggagctact gcgcgcaggc gaggccgagc gagcgtcatt cctgctagcc
     1441 gaggcgctcg ggctgtggcg gggagaaccg ttccccgacc tccagtcctg ggagccggcg
     1501 cgagccgaat ccgagcgcct caacgaactg cggcgcgagg cggaggacct gcgcgtcgag
     1561 gcactcctgc gggccgggca gcacgatgcg gtccgcgggc tggcacaaca gctggtccgc
     1621 gacgcgccgt tccgcgagca ccggtgggct ctgctcgcgc tcgcgcaata ccgggccggg
     1681 cagcaacacg acgcccttcg caccctgcaa aaggccaggg cggtcctggc agccgagctg
     1741 gggctcgacc catcacagga gttggccgag ctcgaggagg cgatccttcg ccaggatgcc
     1801 tcgctcgccg ccaaggcggc gcttcccgag ccgagccgcg tatgccccta cccgggtctg
     1861 gtcgcctacg gcgttgccga tgcgcccacc ttctacgggc gcgaggaggt gacggctgcc
     1921 tgcctgcgac gcctcgacga ggtgcagacg ctggcggtgg caggtccctc cgggtgcggc
     1981 aagtcctccc tcgcgcgggc cggtgtggca gcagcgctgg aacatgatgg acatcgcgtc
     2041 ttcgtcatca cgccggggac ccacccgatg tctgcgttgg cgggggttgg cagccgcccg
     2101 ggcaccgtcc tggtcgtgga ccagtgcgag gaggcattgg cgctcgcgga cgggtcaccc
     2161 gagcgcatcg agttcttcgc cgctctggtc gaattctccc agcgccactc cttggtcatc
     2221 acgatgcggg ccgatcggat cggcgagctc gccccacatc gcgacttcgc cacgctcgtc
     2281 gagcggggcc tctacctgct gggaccgatg gcgcagacgg acctgcgcgt agctatcgag
     2341 ggacccgcgg cccaggcagg gctgcggctg gagccgggcc tggtcgacct tctggttcgc
     2401 gaggtcgccg gcgaacctgc cgccttgcca ctggtctccc atgtgctgcg ccagacgtgg
     2461 cgcaaccgcc agggcaacac cctgacggtg caggggtatg ccgcgaccgg cggcgtgcgt
     2521 gcggcagtgg cccagtcggc cgagggtgtc ttccgcggac tcgaccacgg acaccaggcg
     2581 acgctgcgcg acctgatgct gcgactggtg gcccctgatg aaggcggcga accggtccgc
     2641 acccgggttc cccgtcgttc ggtcaccggc gaccaggatc gtgtgaggct ggtggaacaa
     2701 ctgctggcgg cgcggctgct ggccaccgac ggcgatagca tcgagatcgc ccacgagtcg
     2761 ctcgcagtcg cctggccgcg gctgcggtcg tggcttgacg aggacatcga cggcgcccgc
     2821 accctgcgtc atctcaccgt cgcgtccgag agctgggacc acttgggccg ccccgacagc
     2881 gagctgtacc gcggcgtccg ccaggcgcgc gcaaccgagt ggcaccagcg ggcgggggcc
     2941 accctcacag acaccgaacg cgacttcctt aaggcctcgg ccgcgctggc cgacaaggaa
     3001 cagcgggcca ccgaagccca ggtgcagcgg gaacgccagc tcaaccgacg cctgcgggcc
     3061 gggctcgcgg tcgtggtggc cctgctggcc gtggccctgg tcacgggcgc catcgccaag
     3121 accgccgcca accgtgcgga ccaacaagcc cgcgcagcgg acgcccgccg actgggcgcc
     3181 gaggcactgc gatccgacgc cctcgaccag tccctgctgc tggccgcagc aggcgtcaca
     3241 ctggacgact cggtcgacac gcgcaactac ctcctcgcca ccctgggtcg ggtcaaggcc
     3301 ctggtcgcca gcgcccgaag cccccagcag gtcgtgagcc tgagcgtcaa caccggcacc
     3361 ggccaggtgg cagccatcgc tctgggcggc gtcggtctcg agctgtacga cgggcggacc
     3421 ctgcgcccgg tctcgctccc gaggagcctg cccggcgcct cggtctccgc cagccctgac
     3481 ggacgtcggt acgccatgtc ggtccgaggc gacctggtcc aagacggaac cgaacccccc
     3541 gtcctcctgc tggaccccaa cggtgccagg tccgcggtcc agctcggcgg cttcccgtcc
     3601 ggatacttcg tcttcgacaa cctgggcttc ggccccatca gcccggacaa catggagttc
     3661 agcgccaaca gccgctggct cgccgtcgcg atgcgagacc ttgcgggccg caggcccgac
     3721 acgacggtcg tctgggatct gcgctcgcct ggtcgacccg tcgccatggt gcacctgggt
     3781 gaggtgcgcg cccccaccgt gagcccggac ggtcacacgt tgtactccgt cagcacccag
     3841 aaacggcgcc ttcaagtcac cgaccttcca agcggacgga cacgccgcac cctcggagcc
     3901 agggacctcg gcgtgcgcca gctcgacgac atcctcgtgg aaagccggga tgcgcggatg
     3961 ctggcactcg gcgctggggt cgaggccgtg gtgctggaca gagcgaccct caagccgcgg
     4021 gcctatctcg ccggtcaggg gcagacgacc ggcctggcgt tctccccgga cgacacgcag
     4081 gtggctgcca gtggagaaca cctcatggtc tgggagatcc acgggcacga cgtcgtcaag
     4141 gtgctggtcc aggacgggca gatggaccac ccgagcttca gccgcgacgg aaggacgctc
     4201 tacacgagga cttactccgg gctggtccag gagtgggacc tcgccggcga ccggaggttc
     4261 ctcacggccc gcgccggcga ccctctgagc tggagcgaac ccgggcccag gatctccccg
     4321 gatgaccgca cgatcggcta cgtgaccctc gggcccgagt tccggattcg ggacgtggcc
     4381 accggaaggc taggcccggt cgtgccggga ggcatggcac aggggcgctt cctcgacatc
     4441 gcctggcatc ccgacagcaa aacggtcaat atcacctccg gtgacccact cgtccggacg
     4501 tgggacagca cgacgggccg gctgatcgcc gagcgccggc tggcgccggc cccatccacc
     4561 gagggagcag caatcgcctt cttcagcgtc aatgggaagt acctgctcgt cggcaccact
     4621 gccggcaggc tgcacgtcct caacgcccgc accctggtcc cagcacgcgc cccgatccag
     4681 gtgtacaaac agaagacggg cgaacaacag tccaaagagg tcttcgtctt cagcccgagc
     4741 ggggacg
//
LOCUS       DASYFY010000610         1938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_622978, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000610 DASYFY010000000
VERSION     DASYFY010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622978"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..881
                     /locus_tag="VGN19_12410"
     CDS             <1..881
                     /locus_tag="VGN19_12410"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEV7196736.1"
                     /translation="SGVVSMAFSLLLARTLVTSTLRLRTMAAELGAGESVRPAGAAPR
                     EIRVVGDELARSGDRLRAAQARERQLEQSRRELVAWVSHDLRTPLAGLRAMAEALEDG
                     LAPDPARYHHQMLKQADRMTAMVDDLFELSRIHAGTLNLCVQPLALRDVVSECIAGAS
                     PVAAAGRVVIDGEVGPDLEVRADPDALSRVVGNLVMNAIRHTPADGAVLVEGRRAGAA
                     IELSVTDACGGIHPDELERVFDVAWRGSSARTPETGTGAGLGLAIVRGLVEAHRGTVS
                     VSNHGPGCRFLVRLPA"
     gene            complement(955..1158)
                     /locus_tag="VGN19_12415"
     CDS             complement(955..1158)
                     /locus_tag="VGN19_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014144190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEV7196737.1"
                     /translation="MATGTVKWFNSEKGFGFIEQDGGGADVFVHYSAIESGGYRELQE
                     GQKVEFDVTQGPKGPQAEKVKGI"
     gene            1476..>1938
                     /locus_tag="VGN19_12420"
     CDS             1476..>1938
                     /locus_tag="VGN19_12420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196738.1"
                     /translation="MFPRVAIVRSAFASLVTLAAAVVIAASAQAVVPTAPAQTWGVNG
                     RVSAILPLPSGRVVVGGSFTAVVDSVGNTQFAATNVALFDPATGQFDSTWRPSVNGSV
                     NALATDGSRLFLGGAFSKVGGVNRDKLAAITLSSGALEPGWVGPKLDGPVDV"
BASE COUNT          273 a          661 c          682 g          322 t
ORIGIN      
        1 tctcgggagt ggtgtcgatg gccttctccc tgctgctggc ccgcacgctc gtcacctcga
       61 cccttcggtt gcggaccatg gccgccgagc tcggagccgg agaatccgtc aggccggcgg
      121 gtgccgctcc gcgcgagatc cgggtggttg gggacgagct ggcccggagc ggggatcggc
      181 tacgcgctgc ccaggcacgc gaacgtcagc tcgagcagtc acggcgcgag ctcgtggcgt
      241 gggtgtcgca cgacctccgg acaccgttgg ccggactgcg cgcgatggcc gaggcgctcg
      301 aggacggcct ggcccccgat cctgcccgtt accaccacca gatgctcaaa caggccgacc
      361 gcatgacggc catggtcgac gacctgttcg agctgtcccg gatccacgcc ggcactctca
      421 acctctgcgt gcagcccttg gcgctgcgcg acgtcgtgag cgagtgcatc gccggtgcga
      481 gcccggtcgc cgctgctggg cgcgtcgtca tcgacggcga ggtcggcccg gacctcgagg
      541 tgcgggccga ccccgacgcc ctgtcgcggg tggtgggcaa cctcgtgatg aacgcgatcc
      601 ggcacactcc cgccgacggt gcggtcctcg tggaagggcg ccgcgccggc gccgccatcg
      661 agctcagcgt cacggacgcg tgcggaggaa tccacccgga cgagctcgag cgcgtgttcg
      721 acgtggcctg gcgaggcagc tcagcgcgta ccccggagac ggggaccggc gccgggctgg
      781 gactggcgat cgtccggggc ctcgtcgagg cgcaccgggg gaccgtgagc gtgagcaacc
      841 acgggccggg gtgcaggttc ctcgtgcggc tgccggcctg acgccaaacg cgaaaccccc
      901 gaccggatgg tcgggggttt cgctcgggac cgaagtcacc ggaggtctct ggggtcagat
      961 gcccttgacc ttctcggcct gggggccctt ggggccctgc gtgacgtcga actcgacctt
     1021 ctggccctcc tgcagctcgc ggtagccgcc gctctcgatg gccgagtagt gaacgaagac
     1081 atcggcgccg ccgccgtcct gctcaatgaa gccgaagccc ttttcgctgt tgaaccactt
     1141 cacggtgcct gttgccactg gtgttgcctc ttcttgtcag cgaggcctcc cgtgtggaga
     1201 cctcaggctg ccgatggtca cgacgaacgc gacacgcgaa ccttcgcgcg gtggctcagt
     1261 cgagccgagc ccgcgcttgg gtggactcgg acggcaaccg ggaacgacgg tagcagccga
     1321 tgacgtcttt gccccggtca accgctctct gggacaagga gatgtccagc gaaatggacg
     1381 agcgtcgggc atctggccgt tttgcgtacc agcgtcgtaa ccggtcctag ccttgaggca
     1441 ttcgggtcca gtgccgtctc cctcaaggag cgcagatgtt tcctcgcgtc gccattgttc
     1501 gctcagcgtt tgccagcctc gtgactctcg cggcggcggt ggtgatcgca gcgtcggcgc
     1561 aggcggtcgt gccgacggcg ccggcgcaga cctggggtgt gaacggcagg gtgtcggcca
     1621 tcctgcccct ccccagcggc agggtggtcg tcggtgggtc gttcaccgcc gtggtcgaca
     1681 gcgtcgggaa cacccagttc gctgcgacca atgtcgccct cttcgatccc gccactggtc
     1741 agttcgactc gacctggcgc cccagcgtca acggttcggt gaacgcgctg gcaacggatg
     1801 gcagccggct gttcctcggc ggcgcattca gcaaggtcgg tggcgtcaac cgggacaagc
     1861 tcgcagccat cacgctgagc agcggcgcgc tcgagcccgg ttgggtgggc cccaagctcg
     1921 acggcccggt cgacgtca
//
LOCUS       DASYFY010000611         2323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1201331, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000611 DASYFY010000000
VERSION     DASYFY010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1201331"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1914
                     /gene="glgB"
                     /locus_tag="VGN19_12425"
     CDS             <1..1914
                     /gene="glgB"
                     /locus_tag="VGN19_12425"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003844 - 1,4-alpha-glucan branching
                     enzyme activity [Evidence IEA];
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HEV7196739.1"
                     /translation="PYRFAPTLGPIDLHLIGEGRHEELWTVLGAHVREYPGPMGTVVG
                     TSFAVWAPRAQAVHVAGDFNGWDTRAHSMRLLGESGVWELFIPGVGDGTLYKFLVRGA
                     DGKVREKADPMARATELPPGRASSVVDSRHAWADDEWMRQRTGSDAHAAPMSVYEVHL
                     GSWRRNHSYRDLAEHLVNYVADLGFTHVELMPVMEHPYPPSWGYHVTSYYAPTARFGR
                     PDDFRYLVDRLHQAGIGVILDWVPGHFATDPWALSRFDGLPLYEHADPRKGWHPEWGS
                     YIFDFGRVQVRNFLVANAVYWLEEFHIDGLRVDGVASMLYLDYARKDGEWIPNIHGGR
                     ENLEAVDLLQEANATAYKRVPGIVTIAEESTSWPGVTKSTDTGGLGFGLKWNMGWMND
                     SLRYLKEDPIHRQYHHHLLTFSLMYAYSENYLLPISHDEVVHGKGSLLRKAPGSRYDQ
                     LATVRAFLAYLWTHPGKQLLFMGTEFAQEAEWADGRELDWWLLDHAAHYRVHNLVKEL
                     NRVYRENPALWALDSDPAGFEWLNANDSAWNTYSYLRFGTQDRQGSVVAVAVNFGGLA
                     RDPLRLGVPSAGQWKVLLDTSGFDEFGTPSQADLVIEARPHPADGQPYSLEVRVAALS
                     AVCLVPVEVEDAP"
     gene            1911..>2323
                     /locus_tag="VGN19_12430"
     CDS             1911..>2323
                     /locus_tag="VGN19_12430"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775664.1"
                     /note="catalyzes the interconversion of alpha-D-glucose
                     1-phosphate to alpha-D-glucose 6-phosphate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase, alpha-D-glucose
                     phosphate-specific"
                     /protein_id="HEV7196740.1"
                     /translation="MSDPRAGQLAGPSDLVDIPHLVTAYYSLQPDPQDVDQQVAFGTS
                     GHRGSSLRTAFNEAHILATTQAICDYRRSQGFDGPLFIGRDTHGLSEPAWSSALEVLA
                     ANDVTVLVDDRDGYTPTPAVSHAILRANGGRTTGPG"
BASE COUNT          362 a          838 c          769 g          354 t
ORIGIN      
        1 ccgtaccggt ttgcgcccac cctcgggccg atcgacctgc acctgatcgg cgagggccga
       61 cacgaggagc tgtggacggt gctcggcgcg catgtgcgtg agtaccccgg tccgatgggc
      121 accgtggtcg gcacctcgtt cgccgtgtgg gctccgcggg cccaggccgt gcacgtggcc
      181 ggcgacttca acggttggga cacccgcgcc cactccatgc gcctgctcgg cgagtccggc
      241 gtctgggagc tgttcatccc cggggtgggc gacggcaccc tctacaagtt cctggtccgc
      301 ggagcggacg gcaaggttcg cgagaaggcc gacccgatgg cccgcgcgac cgagctcccg
      361 ccgggccggg cctcctccgt ggtcgactcc cggcacgcct gggccgacga cgagtggatg
      421 cgccagcgca ccgggtcgga cgcgcatgcc gcacccatga gtgtctacga ggtccacctg
      481 gggtcgtggc gtcgaaacca cagctaccgc gacctcgccg agcacctggt caactatgtg
      541 gccgacctcg gcttcaccca cgtcgagctc atgcccgtga tggagcaccc gtacccgccg
      601 tcctggggct accacgtcac cagctactac gccccgacgg cccggttcgg ccgcccggac
      661 gacttccggt acctggtcga ccggctccac caagccggga tcggcgtcat cctcgactgg
      721 gttcccggcc acttcgccac cgacccgtgg gccctgtccc gcttcgacgg cctgccgttg
      781 tacgaacacg cggacccgcg taagggctgg caccccgagt ggggctcgta catcttcgac
      841 ttcggccggg tccaggtgcg caacttcctg gtggccaacg ccgtgtactg gctggaggag
      901 ttccacatcg acggcctgcg tgtcgacgga gtggcgtcga tgctgtacct cgactacgcc
      961 cgcaaggacg gtgagtggat ccccaacatc cacgggggcc gcgagaacct cgaggcggtg
     1021 gacctgctcc aggaggcgaa cgccacggca tacaagcgtg tcccgggcat cgtcaccatt
     1081 gccgaggagt ccacctcctg gccgggcgtc accaagtcca ccgacaccgg cggtctggga
     1141 ttcggcctga agtggaacat gggctggatg aacgactcct tgcgctatct caaggaagac
     1201 ccgatccacc ggcagtacca ccaccacctg ctgacgttct cgctcatgta cgcctacagc
     1261 gagaactacc tgctgcccat cagccacgac gaagtggtgc acggcaaggg ctcgctgctg
     1321 cgcaaggcac cgggcagccg atacgaccag ctcgccacgg tgcgcgcctt cctggcctac
     1381 ctgtggaccc accccggcaa gcagctgctc ttcatgggca ccgagttcgc ccaggaggcg
     1441 gagtgggcgg acgggcgcga gctcgactgg tggctgctcg accatgccgc gcactaccgc
     1501 gtgcacaacc tggtcaagga gctcaaccgc gtctaccgcg agaaccccgc gctgtgggcg
     1561 ctggacagcg acccggccgg gttcgagtgg ctgaacgcga acgacagcgc gtggaacacc
     1621 tactcctacc tgcgtttcgg cacgcaggac cgtcaggggt cggtcgtcgc cgtcgcagtg
     1681 aacttcggag gcctggcgcg tgacccgctc cgtctggggg tccccagcgc cggccagtgg
     1741 aaggtgctgc tcgacaccag tggcttcgac gagttcggca cacccagcca ggccgacctc
     1801 gtgatcgagg cacgtccgca cccggccgat ggtcagccat actcgctcga ggtccgggtc
     1861 gctgccctct cggctgtctg cctggtccct gtcgaggtcg aggacgcacc gtgagcgacc
     1921 cgcgggcggg ccagctggcc gggccctccg atctggtcga catcccgcac ctggtgacgg
     1981 cgtactacag cctgcagccc gatccgcagg acgtcgacca gcaggtcgcg ttcggcacct
     2041 cggggcatcg ggggtcgagc ctgcggacgg ccttcaacga ggcgcacatc ctcgccacga
     2101 cccaggcgat ctgcgactac cgcaggtcgc aggggttcga cgggccgctg ttcatcgggc
     2161 gcgacaccca tgggctgagc gaacccgcgt ggtcgtcggc gctggaggtg ctcgccgcga
     2221 atgacgtcac cgtgctggtg gacgaccgcg acgggtacac ccccacgccg gccgtctccc
     2281 acgcgatcct gcgtgccaac ggcggacgca ccacgggacc cgg
//
LOCUS       DASYFY010000612         1553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1674423, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000612 DASYFY010000000
VERSION     DASYFY010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1674423"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VGN19_12435"
     CDS             complement(<1..402)
                     /locus_tag="VGN19_12435"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7196741.1"
                     /translation="MAAEVVILGGGVGGTLTANLVARQAGAQAHVTVVDTTGQHVYQP
                     GFLYVALGKELPKRLSHAESSLLRSDVDLVTEPAVKVDPTARTVELASGRTLAYDQLV
                     LATGSRTTMDEVPGGDAAYDFYTMIGATRLWL"
     gene            complement(408..647)
                     /locus_tag="VGN19_12440"
     CDS             complement(408..647)
                     /locus_tag="VGN19_12440"
                     /inference="COORDINATES: protein motif:HMM:NF013379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEV7196742.1"
                     /translation="MSTVQIDKSIDARGMACPGPLMNLIGAIRQGQVGQVIEVLSSDE
                     GSKTDIPAWVTKAKHEMVEVVPEDGYARFVIRKVR"
     gene            complement(666..1079)
                     /locus_tag="VGN19_12445"
     CDS             complement(666..1079)
                     /locus_tag="VGN19_12445"
                     /inference="COORDINATES: protein motif:HMM:NF025066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/DrsH-like family protein"
                     /protein_id="HEV7196743.1"
                     /translation="MDAQEKPISVVLFSGTDDKLTAAAVLAVGAAAMGRPVNIFLQYY
                     ALDAFRAGKLCADHGLASEATAGQASSVHGHRGQHWSELLQQAKDVGEVDIQACALSM
                     DMYGISRDDLDPLVDGVEGVAAFIASVSDGQVVFI"
     gene            complement(1325..>1553)
                     /locus_tag="VGN19_12450"
     CDS             complement(1325..>1553)
                     /locus_tag="VGN19_12450"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Rid family hydrolase"
                     /protein_id="HEV7196744.1"
                     /translation="ALDNLEAVLRDCGSRLSDVVRLNYYTTDVEGFIAAGETLGRLLA
                     AGGCRPASTLLGVARLAYPESLIEIEATAVA"
BASE COUNT          245 a          528 c          529 g          251 t
ORIGIN      
        1 gagccagagc cgcgtggctc cgatcatcgt gtagaagtcg taggcggcat cgccgcccgg
       61 cacctcgtcc atggtggtgc ggctgccggt ggccagcacg agctggtcgt aggcgagggt
      121 gcggccggat gcgagctcca ccgttcgcgc cgtcgggtcg acctttacgg ccggctcggt
      181 gacgaggtcg acgtcgctcc gcagcaggct cgactccgcg tgggacagcc gcttgggcag
      241 ctccttgccg agtgcgacgt acagaaagcc gggctgatag acgtgctggc cggtcgtatc
      301 gacgaccgtc acgtgcgcct gagcgccggc ttgcctggcg accaggttgg cggtgagggt
      361 tccccctacg ccgccgccga ggatgacgac ttcggcggcc atgtcactca ccgcaccttc
      421 cggatgacga accgggcgta gccgtcctcg gggacgacct cgaccatctc gtgcttcgcc
      481 ttggtcaccc aggccgggat gtccgtcttc gagccctcgt cgctcgagag gacctcgatg
      541 acctggccca cctggccctg ccggatcgcc ccgatcaggt tcatgagggg cccggggcag
      601 gccattcctc tggcgtcaat gctcttgtcg atctgcacag tgctcataac cggctccttg
      661 gtaattcaga tgaagacgac ctggccgtct gaaacggagg caatgaaggc cgccaccccc
      721 tccacgccgt cgaccagcgg gtcgaggtcg tcgcggctga tgccgtacat gtccatcgag
      781 agcgcgcagg cctggatgtc gacctcgccg acgtccttgg cctgttgcag cagctcactc
      841 cagtgctggc cccggtgacc gtggacgctg gaggcctgac cggcggtcgc ttcggaggcc
      901 agcccgtggt cggcgcagag cttcccggcc cggaacgcgt cgagtgcgta gtactgcagg
      961 aagatgttga ccggccggcc catggccgcc gcaccgacgg cgaggaccgc ggcggccgtg
     1021 agcttgtcat cggtgcccga aaagagcacc actgagatcg gcttctcttg tgcgtccatt
     1081 ggatgggtga ttcccctcct acgccgaaga gtctgagcgc gcgcaggcac cgcccggcag
     1141 aggcacgggt cccgctgcga gggggacccc tgcccgtacg tgggcgatca gctacgcagc
     1201 tgatgtcagc gcgtgaggac gccagagctc agcgcggcac ccgagacggg cacggccctc
     1261 gccgaggacc gagcccctgg accggccacg ggtcgtaatg gacgggctgc gcgtatggcc
     1321 acattcaggc gacggcggtc gcctcgatct caatcagcga ctccggatat gccaagcggg
     1381 ccacgccgag gagtgtggac gccggcctgc atccgcccgc cgcgagcagg cgaccaagcg
     1441 tttcaccggc cgcgatgaag ccctcgacat cggtcgtgta gtagttgagc cgcacgacat
     1501 ccgagagccg tgagccgcaa tcgcgcagca ccgcctcgag gttgtccagc gcc
//
LOCUS       DASYFY010000613         1509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_464439, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000613 DASYFY010000000
VERSION     DASYFY010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464439"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..1304
                     /locus_tag="VGN19_12455"
     CDS             189..1304
                     /locus_tag="VGN19_12455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011692477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent cysteine synthase family protein"
                     /protein_id="HEV7196745.1"
                     /translation="MPEAPRLVDAPARQPADRAWLDEAVRRIQADANRSADTHLVHVP
                     IPGLPDVDLYLKDESTHPTGSLKHRLARSLFLYALCNGELREGTTVIEASSGSTAVSE
                     AYFARMLGLPFIAVMVATTSVEKIALIEREGGRCHLVEDASEVYEAAHTLAADLGGHY
                     LDQFTYAERATDWRGNNNIAESIFEQMGRERHPVPRWVVVGAGTGGTSATIGRYVRYR
                     GLASEICVVDPERSAFLPAFLGDVDSVAQACGSRIEGIGRPRVEPSFVPSVVDRMLLV
                     PDAASVAAMRFLSERTALRAGPSTGTNLFGALRLACELAARGEGGSIVSLLCDGAERY
                     AGTYRDDDWVASRGWDLGPHLAVLQRAWDDGAWEDGA"
BASE COUNT          226 a          518 c          526 g          239 t
ORIGIN      
        1 catcactggc cagggtcatg acctcagcat ggacccacaa cgagtcaacg gacagtcttg
       61 acagcgctga cgggggctgc cgctagcctc gtcccaccac gacgaggtga ggcttatccg
      121 gctaggcctg cggcataccc cgtccttgat gtccttgatg tccttgatct tttgaggtga
      181 gacccgcaat gcccgaggcg ccacggcttg tcgatgcacc cgcccgccag ccggccgacc
      241 gggcctggct cgacgaggcg gttcggcgca tccaggcgga cgcgaaccgc agcgccgaca
      301 cccacctggt gcacgtgccg attccgggac ttccggacgt cgacctctat ctcaaggacg
      361 agtcgaccca tcccaccggg agcctgaagc atcggctggc caggtcgctg ttcctctacg
      421 ccctgtgcaa cggcgagctg cgcgagggca ccaccgtcat cgaggcctcc agcgggtcga
      481 cggccgtcag tgaggcctac ttcgcccgga tgttggggct gccgttcatc gcggtcatgg
      541 tcgcgacgac cagcgtcgag aagattgcgc tcatcgagcg cgagggcggc aggtgtcacc
      601 tggtcgagga cgcgagcgag gtctacgagg ccgcgcacac gctcgctgcg gacctcggcg
      661 ggcactacct cgaccagttc acctacgcgg agcgggccac ggactggcgc ggcaacaaca
      721 acatcgccga gtcgatcttc gagcagatgg gtcgcgaacg gcacccggtg cctcgctggg
      781 tcgtcgtggg cgccggaacg ggcggcacca gcgcgacgat cgggcggtac gtgcgctatc
      841 gcgggctggc cagtgagatc tgtgtggtgg atccggagcg gtcggccttc cttcccgcct
      901 tcctgggaga cgttgactcc gtggcgcaag cctgcgggtc gcgcatcgag ggcatcgggc
      961 ggccccgggt cgaaccgagc ttcgttccgt ccgtggtcga ccgcatgctt ctcgtgcccg
     1021 atgcggcctc ggtggcagcc atgcggttcc tgagcgagcg gaccgctctg cgggcggggc
     1081 catccacggg aaccaacctc ttcggcgcgc tgcggctcgc ctgcgagctg gccgcgcgcg
     1141 gcgagggcgg cagcatcgtg tcgctgctgt gcgacggagc cgagcggtat gccgggacct
     1201 accgcgacga cgactgggtc gcctcacgcg gctgggacct cgggcctcat ctggcagtcc
     1261 tccaacgcgc ctgggacgac ggggcctggg aggacggcgc ctaggaggac ggggccaagg
     1321 gcaacgcggc ctcgggcgct gactggttca gcctccggac accgcgttga tgacgtgcac
     1381 ggtggagcgc ggcgtcacga ccgtggccac tccgtccagc cgcttcgcgt cctcaccgtc
     1441 cacgaagatg ttgacgtggc gccggatctc gccccgctcg tccctgatgc gcgacccgag
     1501 gatcggcca
//
LOCUS       DASYFY010000614         5856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_255803, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000614 DASYFY010000000
VERSION     DASYFY010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5856
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255803"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..992)
                     /locus_tag="VGN19_12460"
     CDS             complement(72..992)
                     /locus_tag="VGN19_12460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HEV7196746.1"
                     /translation="MTTPHPALRLSPEVAGALAEGRPVVALESTIISHGMPYPRNVEM
                     AVEVEGIIREGGATPATIAVLDGVARIGLERDDLEVLATHPDVMKVSLRDLPFVMARR
                     AHGATTVASTMRLAALAGIPVFVTGGLGGVHRGAATSMDISADLTELSQTDVAVVSAG
                     VKSILDIGLTLEVLETLGVPVVAFGADEFPSFYSRSSDHSAPLRVDTVDQLAAMMRAK
                     WDLGLAGGIAIANPVPSVDEIPADEIGALIEQALAECDERGIHGKDITPFLLGRIVEL
                     SQGRSLETNIALVRNNARLGAALAVAYATV"
     gene            complement(989..2140)
                     /locus_tag="VGN19_12465"
     CDS             complement(989..2140)
                     /locus_tag="VGN19_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEV7196747.1"
                     /translation="MSLTQRERDIVGLLRAEPLLDAATVATRLGATKAAVSVHLSNLT
                     KKGVILGRGYVVRPEPQSVVVVGGANMDIRAHSTDHAQLHTSNPGSAITTPGGVGRNI
                     AENLARLGSPTHLVAPVGRDAFGEQVVALTRAAGVLVDHLVLTEEPTGTYLAVMDSTG
                     ELVVAVSTMTATDRLTVPHLTASRDLLANAAMIVLDGNIPLEPAAWLLDLAAAAAVPV
                     VVDPVSVIKARHLATTLSVQRPLLAITPNLDELSAIVGEDVADTKAAIGKAARVVHDL
                     GVAQVWVRRGRRGSLLSSTDDTGHVVVATLPAPSGVVVDVTGAGDSMTAAFVHALLRG
                     DSPVMAARFGQQAAALTVASSETVRPDLSARLVDAELARTTIPTSKENR"
     gene            2216..2740
                     /locus_tag="VGN19_12470"
     CDS             2216..2740
                     /locus_tag="VGN19_12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HEV7196748.1"
                     /translation="MALAVCLVFDPVTDRAFRQLWGRLETAGISTLATHTHGRHVPHL
                     SYAVLRTCDVDAVAAAVATLPRAEPLALRFDAVGLFRRGRAALLPSASADLQLRQCAV
                     VGACESTGAELHRHYRPGSWIPHSSLATRVRRDDLGTMAAAAFDILPLDATAERCVLI
                     DSSTGQRWPLPTPA"
     gene            complement(2746..3801)
                     /locus_tag="VGN19_12475"
     CDS             complement(2746..3801)
                     /locus_tag="VGN19_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG family protein"
                     /protein_id="HEV7196749.1"
                     /translation="MSGRLTLLIGSPRVAPGLLTRAAWQALDDADLTFARGADEPLVE
                     AIEESGMPVSHLGVLAPPELARQLVSQAEGRKVLWIASSDADPGLTDAVASEVSRLPE
                     PPEVEVLVGSWDVPGSRLLDLVAVMDRLRSPGGCPWDAEQTPESLVKYLIEEAHEAAE
                     AIESGDRDHVREELGDVLLQVAFQSRVAQEDSRAPFDIDDVAATIVEKLLRRHPHVFA
                     DGAASTPAEVEREWEVIKAQERAEKAGHAGGEAGHENLMYGIPRSLPSLLAAEKVLAR
                     WERAGGDLASLPGTSTVTGDDGDLGEQILALVARARQLGQSGEALVRGALGRFADARV
                     ADDPKAGSSEARCPEGG"
     gene            complement(3809..4315)
                     /locus_tag="VGN19_12480"
     CDS             complement(3809..4315)
                     /locus_tag="VGN19_12480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196750.1"
                     /translation="MKAFRAVRGSIVVAAAAGVLALSGCGTANTAAIVNGMRITERDA
                     QVAVEQVHQAQPDSTLDTPNAVASLIMAQFINQVANASGKGLSDSAAAAAVPQIVNPT
                     PTTLQLVKASLAWSQLTSAEQTQAVDAAAKAHITLNPRYGTFNAKRIQFEKSAPNWLK
                     ASGTSAGG"
     gene            complement(4329..>5856)
                     /locus_tag="VGN19_12485"
     CDS             complement(4329..>5856)
                     /locus_tag="VGN19_12485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TRCF domain-containing protein"
                     /protein_id="HEV7196751.1"
                     /translation="LLVQQHLQTFTERYAQFPVTVRALSRFQSDKEARETMAGLEQGS
                     VDLVIGTHRLLSGEIRYKDLGLVVIDEEQRFGVEHKEQLKTLRTAVDVLAMSATPIPR
                     TLEMAVTGIREMSTLATPPEERHPVLTYVGAYDEKQIVAAIRREMLRDGQVFLVHNKV
                     SSIEAAASRIRELVPEARVATAHGKMGEHRLEQVVLDFWDKQFDVLVCTTIVETGLDI
                     SNANTLIVERSDVLGLSQLHQLRGRVGRGRERAYCYFLYPPEKPMTETAHDRLATMAS
                     HTDLGSGIQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRLVGEAVADFRGDGGDG
                     PVGEIKIELPVDAHLPHEYVPGERLRLEAYKKLASVVDEAALQEIEAELVDRYGPLPE
                     PVRNLMEVARLRTVARAAGVADISVQGSFVRFGPVELAESAQLRLQRLYPKSLVKDAV
                     HTILVPKPMTARVGGQPLRDTAVLQWASDLIRAVLMGSVADAARVGAQQAAVPARSSR
                     "
BASE COUNT          903 a         2053 c         1983 g          917 t
ORIGIN      
        1 gcgagcaccg aacggtgctc gccccgcggc atacctcctg accagccgca ggtcgcggta
       61 gagcccgcca ctcagaccgt cgcgtaggcc accgccagag ctgcgccgag ccgagcgttg
      121 ttgcgtacca gcgcgatgtt ggtctccagt gaacggccct gcgagagctc gacgatccgg
      181 ccgagcagga acggagtgat gtccttgccg tggataccgc gttcgtcgca ctcggccagc
      241 gcctgctcga tcagggcgcc gatctcgtca gcggggatct cgtcgaccga cggcaccggg
      301 ttggcgatcg cgatacctcc ggcgagcccc aggtcccact tggcgcgcat catcgcggcc
      361 agctggtcga cggtatcgac ccgcaacggg gccgagtggt cgctcgagcg ggagtagaag
      421 gacgggaact cgtcggcgcc gaaggccacg acaggcactc ccagcgtctc cagtacctcc
      481 agggtgagcc cgatgtcgag aatggacttc actccggccg acaccacggc cacgtccgtc
      541 tggctcagct cggtgagatc cgccgagatg tccatgctcg tggcggcacc gcggtgcact
      601 cccccaagcc ccccggtgac gaacacgggt atgccggcca gcgcggccag ccgcatcgtg
      661 ctcgcgacgg tggtggcccc gtgggctcgt cgggccatga cgaagggcag atcacgcagg
      721 ctgaccttca tgacgtcggg gtgcgtcgcc aagacctcca ggtcgtcgcg ctcgagaccg
      781 atgcgagcca cgccgtccag aaccgcgatc gtggccgggg tcgcgccgcc ctcgcggatg
      841 atcccctcga cctcgaccgc catctcgacg ttgcgagggt agggcatccc gtggctgatg
      901 atcgtgctct cgagggcgac gacgggccgc ccctcggcga gcgcgccggc aacctcggga
      961 gacagtcgca gggcggggtg cggggtggtc atcggttctc cttgctggtg gggatggtcg
     1021 tgcgtgccag ctcggcgtcg accaggcggg cactcaggtc gggccggacg gtctctgagc
     1081 tcgccacggt cagcgcggcg gcttgttgcc cgaaccgcgc cgccatgaca gggctgtcgc
     1141 cgcgcagcag ggcgtggacg aacgctgcgg tcatcgagtc gcccgcgccg gtgacgtcga
     1201 ccaccactcc ggacggggct ggcagggtgg cgacgacgac gtggccggtg tcgtcggtac
     1261 tgctgagcag gcttccgcgc ctgccgcgac gcacccagac ctgagcaacg cccaggtcgt
     1321 gcacgacacg ggccgccttg ccgatggccg ccttcgtgtc ggcgacgtct tcgccgacga
     1381 tggccgacag ctcgtcgagg ttcggggtga tcgccaggag cgggcgttgc acggacaacg
     1441 tggtcgccag gtgccgcgcc ttgatgacgc tgaccgggtc gacgacgacc gggaccgcgg
     1501 cagccgcggc gagatcgagc agccacgcgg cgggctcgag cgggatgttc ccgtcgagca
     1561 cgatcatcgc ggcattggcc aacaggtctc gtgaagcggt gaggtgaggc accgtaagcc
     1621 ggtcggtggc ggtcatggtc gacaccgcga cgacgagctc gccggtggag tccatgaccg
     1681 ccagataggt gccggtcggc tcctcggtca ggaccaggtg gtcgaccaga accccggcgg
     1741 ctcgcgtcag cgcgacgacc tgttcaccga acgcgtctcg gccgacagga gcgaccagat
     1801 gcgtcggact gcccaagcgc gcgaggttct ccgcgatgtt gcggcccacc cccccgggag
     1861 tggtgatcgc ggatccgggg ttgctggtgt ggagctgcgc gtggtccgtg gagtgcgcgc
     1921 ggatgtccat gttggcaccg ccgaccacca ccacggactg gggctcgggg cgtaccacgt
     1981 acccgcgacc gaggatgacg cccttcttgg tgaggttcga caggtgcacc gacacggcgg
     2041 ccttcgtggc gccaaggcgg gtggcgaccg tcgcggcgtc gagcagcggc tcggcccgga
     2101 gcaggccgac gatgtctcgc tcacgctgcg tcagactcat acttgtaact ataaggcatc
     2161 tttgcttctc ttaggaactg aggcgtaccg ccacgaccac cgggagaatg cggtcatggc
     2221 cttggccgtc tgtctggtgt tcgacccggt gacggaccgg gccttcagac agctctgggg
     2281 ccggcttgag actgcgggca tcagcacgct ggcaacccat acccacggac ggcacgtgcc
     2341 ccacctgtcg tatgccgtgc tgcgcacttg cgacgtggac gccgtcgccg cggcagtggc
     2401 cacccttccc cgcgccgagc cgctggcgct gaggttcgat gcggtcgggc tgtttcgccg
     2461 tggccgcgcg gccctgcttc cgtcggccag cgccgacctc cagctgcgac agtgcgcggt
     2521 ggtgggagcc tgcgagtcga cgggtgccga gctgcatcgt cactatcggc cagggtcgtg
     2581 gatcccgcac agcagcctcg ccacccgggt ccggcgcgac gacctcggga cgatggcggc
     2641 tgcagccttc gacatcctgc cgctggacgc gacggccgag cgctgcgtcc tcatcgacag
     2701 ctccaccggg cagcgatggc cgctgccgac gccggcctag cggggtcaac ccccctcggg
     2761 acagcgcgcc tcggagcttc ccgccttggg gtcgtcggcg actcgggcgt cggcgaagcg
     2821 gcccagcgcc ccgcgcacca acgcttcccc tgactgaccc agctggcggg cgcgagccac
     2881 cagagccagg atctgctcgc cgaggtcgcc atcgtccccg gtgaccgtcg acgtacctgg
     2941 cagcgaggcc agatcccctc cggcgcgctc ccaacgggcc aacaccttct cggccgccaa
     3001 cagactgggc agcgatcgcg gtatgccgta catcaggttt tcgtgccctg cctcgcctcc
     3061 cgcgtgaccg gccttctctg cgcgctcctg ggccttgatg acctcccatt cgcgctcgac
     3121 ctccgctggg gtgctcgcgg cgccatcggc aaagacgtgc ggatggcgac gcaacagctt
     3181 ctcgacgatc gtcgccgcga cgtcgtcgat gtcgaacggc gctcgcgagt cctcctgtgc
     3241 cactcgggac tggaaggcca cctgcagcag cacgtcaccg agctcctcgc gaacgtggtc
     3301 gcggtccccg gactcgatgg cctcggccgc ctcgtgcgcc tcctcgatga ggtacttcac
     3361 gagcgactca ggggtctgct cagcatccca ggggcaccca ccaggtgagc gcagccgatc
     3421 catcacagcc accagatcca gtagccggga cccgggaaca tcccaggaac cgacgagcac
     3481 ctcgacctcg ggcggctccg gcagccgcga gacctccgag gccaccgcgt cggtcagacc
     3541 agggtcagcg tccgacgagg cgatccacag caccttgcga ccctcggcct gcgagaccag
     3601 ctgtcgcgcc agctcaggcg gggcgagcac gccaaggtga ctgaccggca taccggactc
     3661 ctcgatagcc tcgacgagcg gctcgtccgc cccgcgcgcg aaggtgaggt ccgcatcgtc
     3721 gagggcttgc caggccgcgc gggtcaacag gcctggcgcg acacgcggac tgccgatcag
     3781 cagggtgagg cgacccgaca ctggttcgtc agcctccggc cgaggtgccc gacgccttga
     3841 gccagttcgg agcgctcttc tcgaactgga tgcgcttggc gttgaaggtt ccgtaccgag
     3901 ggttgagggt gatgtgcgcc ttggccgcgg catcgacggc ctgggtctgc tcggcagagg
     3961 tgagctgact ccaggcaagg ctggccttga ccagctgaag cgtggtcggg gtcgggttga
     4021 cgatctgcgg gacggcagct gccgcggccg agtccgacag ccccttgccg gaggcgttgg
     4081 ccacctggtt gatgaactgc gccatgatca gggacgcgac agcgttgggc gtgtccagag
     4141 tcgagtccgg ctgagcctgg tggacctgct ccactgccac ctgagcatcg cgctcggtaa
     4201 tccgcatgcc gttgacgatc gcggcagtgt ttgcggtccc acagccagac aacgcgagca
     4261 cccccgcggc tgcagccacc acgatcgacc cacgcacggc gcgaaatgcc ttcactgaca
     4321 atcccttctc aacgactcga gcgggccgga accgcagcct gctgggcgcc gacacgggcc
     4381 gcatcggcga cactgcccat caacacggcc ctgatgaggt cgctggccca ctgcaagact
     4441 gccgtgtcac gcagcggttg gccacccacc cgggccgtca ttggcttcgg cacgagaatc
     4501 gtatgcacgg cgtccttgac caacgacttg gggtagaggc gctgcagtcg cagctgcgcc
     4561 gactcggcca gctccaccgg accgaaccgc acgaacgagc cctggaccga gatatcggcg
     4621 accccggccg cccgtgccac cgtacgcagc ctcgccacct ccatgaggtt gcggaccggc
     4681 tccggcaggg ggccatagcg gtccaccagc tccgcctcga tctcctgcag ggcggcctcg
     4741 tcgaccacgc tggccagctt cttgtaggcc tcgagtcgca gccgttcgcc gggcacgtac
     4801 tcgtggggca gatgggcgtc gaccgggagc tcgatcttga tctcccccac cggaccgtcg
     4861 ccaccgtcgc cccggaagtc cgcgaccgcc tcgccaacga ggcgcacata caggtcgaag
     4921 ccgaccccgg cgatgtgccc agactgctcg ccacccaaca ggttgccggc accacggatc
     4981 tcgaggtcct tcatcgcgat ctggatgccc gagccaaggt cggtatggct ggccatggtc
     5041 gccagccggt catgggccgt ctcggtcatc ggcttctccg gcggatacag gaagtagcag
     5101 taggcccgtt cccggccccg accaactcgg ccgcggagct ggtgcagctg actcagaccg
     5161 aggacgtcgg accgctccac gatgagggtg ttcgcgttcg agatgtccag gcccgtctcg
     5221 acgatcgtcg tacagaccag gacatcgaac tgcttgtccc agaagtcgag gacgacctgc
     5281 tcgagccgat gctcgcccat cttgccgtgg gcggtggcga cccgagcctc gggcacgagc
     5341 tcgcggatcc tcgaggcagc cgcctcgatg ctggacacct tgttgtgcac caggaagacc
     5401 tggccgtccc ggagcatctc acgccggatc gccgcgacga tctgcttctc gtcataggcg
     5461 ccgacgtacg tcaggacggg gtgccgctcc tcgggcggtg tggcgagcgt ggacatctcg
     5521 cgtatgccgg ttacggccat ctcgagcgtg cgcgggatgg gcgttgccga catcgcgagc
     5581 acgtcgaccg ccgtgcgcag ggtcttgagc tgttccttgt gctcgacgcc gaaccgctgc
     5641 tcctcgtcga tgacgaccag ccctagatcc ttgtatcgga tctcgccact gagtagccgg
     5701 tgggtgccga tcacgaggtc gacgctgccc tgctccaggc cggccatcgt ctcgcgggcc
     5761 tccttgtcgc tctggaaccg cgacaatgcc cggaccgtca cggggaactg cgcataccgc
     5821 tcggtgaacg tctgcaggtg ctgctgcacg agcagc
//
LOCUS       DASYFY010000615         3418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1832108, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000615 DASYFY010000000
VERSION     DASYFY010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3418
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1832108"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1379
                     /locus_tag="VGN19_12490"
     CDS             <1..1379
                     /locus_tag="VGN19_12490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010205781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7196752.1"
                     /translation="IGSSREPRGPGRSGFGVLIVVQNLSVPLDRRVWLECQALRDAGY
                     RVSVICPAGPGEPRRRMQEGVWIRTYRPAPVAVGLAGYAVEFLYSWLCTAWLSLLVWR
                     ERGFSVIQACNPPDTYWALARLWRFRGVRFVFDHHDLNPELFLSRFGAPRGLLGRAQL
                     AGLTWLERRTFATADRVISTNESYRQVALGRGGQDPARVTVVRSGPDTSSMRPIWPAG
                     RPAPGYQLVYLGIMGPQDGVDQALLVMDELVNVRRRADIQLSLLGFGDCFDQLRAQAA
                     DLGLDQNVTFTGRADPAMVADYLSAADVGVCPDLKTPLNDVSTMNKVMEYMAYFLPSV
                     SFDLRESRVTAGDTAVFVESGDIRGFADAICALLDDDAQRLRMGRAARARVATELDWS
                     PQSARYVRVFDELVGPAPRPKSRVRAPSAPPAGREFVALEDPAELRAFLASRARSTHH
                     EVEGAAGA"
     gene            1372..2547
                     /locus_tag="VGN19_12495"
     CDS             1372..2547
                     /locus_tag="VGN19_12495"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEV7196753.1"
                     /translation="MPDVARAKAPALAAVASTDPRPAARVLIDAVQGVVGQEYPWERI
                     DVQDLLMASLTHGVTPALAVRLRGRGDVPAELTERLQGCYRDQLARHLRTLADLRRLA
                     SVLKETDVGWAVVKGPALAEGLWPRPDLRVYVDLDVLIDRRNLREAVAMLEANGVAPV
                     DRNWPFILERVQGELSMELPFGTPLDLHWHLVNDRALRRVFRFPMDDLLGRSAPAKLG
                     SVVAPVLDPVDTVLHLAYHMIHSGGHRLVWLNDFHLAVTAPGMDWDELYDRAQAYGCR
                     LALALSLQRTANVLHPPGGYPRMRGGGPWAALAAAADRWRPVPQLPGEKRSGRIVFQS
                     TRDQLGSSARAASLAALGRTRHEDAVEAGAPNPLHLVVSDPQARRRYFDLVAGVQQP"
     gene            complement(2612..>3418)
                     /locus_tag="VGN19_12500"
     CDS             complement(2612..>3418)
                     /locus_tag="VGN19_12500"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7196754.1"
                     /translation="SDVQAARTAVGMKVAVVGAGGLVGRALVPMLAESCSLVLLDRSG
                     DRKAGIRAVDARNARRLTRAVEGCDAVVDLAADAHWQAPWKAVYENNIPLAVAVLESA
                     RLAGVSTVVHASSNQVAAGYEHDEPFASIVAGHVEAVDPDQVRRLPVSAPPRPVSAYG
                     AAKAFSEAACAWYAEEHRLTTTCLRIGSLLAPDRPRNPRHLATWLSHRDLHGFVVGAL
                     HRPAGAGASVTWAVSANTWRIWDLSDVEERCGYVPIDDAEAWRTDLTRTP"
BASE COUNT          459 a         1219 c         1194 g          546 t
ORIGIN      
        1 agatcggatc gagtcgggaa ccgcgtgggc cgggacggag cgggttcggc gtgctgatcg
       61 tcgtccagaa cctctccgtg ccactggacc gccgagtgtg gctcgagtgt caggctctgc
      121 gtgatgctgg ctatcgggtc agcgtcatct gcccggccgg cccgggggag ccgcggcgcc
      181 gaatgcagga gggcgtgtgg atccgcacct atcgccccgc gccggtggcg gtgggactcg
      241 ccgggtatgc cgtggagttc ctgtactcgt ggctctgcac ggcgtggctc tcgctcctgg
      301 tctggcgtga gcgtgggttc agcgtcatcc aggcgtgcaa cccgcctgac acctactggg
      361 cgctggcccg actgtggcgg ttccgcgggg tgcgcttcgt gttcgaccac cacgacctca
      421 accccgagct gttcctctcc aggttcggtg cgcctcgggg gctgctcggc cgcgcgcagc
      481 tcgccggcct gacgtggctc gaacgcagga cgttcgccac cgccgaccga gtcatcagca
      541 ccaacgagtc gtaccgccag gtcgcgctcg gccggggcgg gcaggacccc gcccgggtca
      601 ccgtggtgcg cagtggccct gacaccagca gcatgaggcc gatttggccg gctggacggc
      661 cggcgcccgg ctaccagctg gtctacctcg ggatcatggg tccccaggac ggcgtcgacc
      721 aggcgctcct ggtgatggac gagctggtga acgttcgccg ccgcgcggac atccagctgt
      781 ccctgttggg tttcggtgac tgcttcgacc agctgcgcgc ccaggcagcc gatctgggcc
      841 tcgaccagaa cgtcacgttc accggtcgag ccgacccggc gatggtcgcg gactatctca
      901 gcgctgctga cgtcggcgtc tgtccagacc tgaagacgcc gctcaacgac gtgtcgacga
      961 tgaacaaggt catggagtac atggcctact tcctgccgtc ggtgtccttc gacctgcgtg
     1021 agtcccgggt caccgccggc gacaccgccg tcttcgtgga gtccggggac atcaggggct
     1081 ttgcggacgc catctgcgcc ttgctggacg acgacgccca gcgcctgagg atgggtcggg
     1141 ccgctcgggc ccgggtcgcc accgagctcg actggtcgcc ccagtcggcc cggtatgtgc
     1201 gggttttcga cgaattggtg ggccctgctc cgcggccgaa gtcccgcgtg cgggcacctt
     1261 ccgcgccccc ggcgggacgg gagttcgtcg ccctcgaaga tccggctgag ctgcgcgcct
     1321 tcctcgcaag ccgggcacgc tctacgcacc acgaagtcga gggggccgcc ggtgcctgac
     1381 gtcgcccggg cgaaggcgcc cgcactcgcc gccgttgcct ccacagaccc acgaccggcc
     1441 gcccgggtcc tgatcgacgc ggtgcaaggc gtcgtgggac aggagtatcc ctgggaacgg
     1501 atcgacgtcc aagacctgct gatggcctcc ctgacccacg gcgtcacccc ggctctggcg
     1561 gtgcgtctgc gtggtcgggg cgacgttccc gccgagctta cggagcgcct tcaagggtgc
     1621 taccgcgacc agctggcccg tcacctgcgc acgctggccg accttcgtcg gctcgcctcc
     1681 gtcctcaaag agacggacgt gggctgggcg gtggtcaagg gcccggcgct ggccgagggg
     1741 ctgtggccgc gccccgacct gcgcgtctac gtggacctcg atgtgctcat cgaccggcga
     1801 aaccttcggg aggccgttgc gatgttggag gccaacgggg tcgcaccggt ggaccgcaac
     1861 tggcccttca tcctggagcg agtgcagggc gagctgagca tggagctgcc gttcggtacg
     1921 ccgctggacc tgcactggca cctggtcaac gaccgtgccc tgcgcagggt cttccgcttc
     1981 cccatggacg acctcttggg ccggtctgcg ccagccaagc tcgggagcgt ggtggcgccg
     2041 gtcctggatc cggtcgacac ggtgctgcat ctcgcgtacc acatgatcca ctcgggcggc
     2101 catcgactgg tgtggctgaa cgacttccac ctggccgtga ccgcgcccgg gatggactgg
     2161 gacgagctct acgaccgcgc ccaggcgtac gggtgtcgtc tggcgttggc gctctcgttg
     2221 caacgaaccg ccaatgtgct gcacccgccc ggcggctatc cgcggatgcg cggcgggggc
     2281 ccttgggcag cactggcggc cgcagccgac cggtggcggc ccgttcccca gctgcccggc
     2341 gagaagcgtt cgggtcggat cgtcttccag tccacccgtg accagctggg cagcagcgcc
     2401 agggccgcgt cgctggccgc cctgggccgt acccggcacg aggacgcggt ggaggcgggc
     2461 gcgccgaacc ccttgcacct cgtggtgagc gacccccagg cgcgtcggcg gtacttcgac
     2521 ctcgtcgcgg gtgtccagca gccttagcgg gtcgacgacg tcactgtgtc cgcgacgtca
     2581 ctgtgtccgc gacgtcacgg tgtccgcgac gtcacggtgt ccgcgtcagg tccgtgcgcc
     2641 aggcctcggc atcatcgatc gggacgtacc cacaccgttc ctcgacgtca gacaggtccc
     2701 agatccgcca ggtgttggcc gaaaccgccc aggtcaccga cgctcccgcg cccgccggtc
     2761 ggtgcagggc gccgacgacg aagccgtgca ggtcacggtg gctcagccag gtggccaggt
     2821 ggcgcgggtt gcgaggccgg tcgggggcaa gcaggctacc gatgcgaagg caggtcgtcg
     2881 tgaggcggtg ctcctcggca taccaggcgc aggccgcctc actgaacgct ttggcggctc
     2941 cgtacgcgct cacgggccgg ggaggggcgc tcacgggcag cctccggacc tggtccgggt
     3001 ccaccgcctc gacgtgcccc gcgacgatgg atgcgaacgg ctcgtcgtgc tcgtagccgg
     3061 cggccacctg gttcgagctc gcgtgcacga ccgtcgagac cccggccagg cgagcggact
     3121 cgagaaccgc caccgccaga gggatgttgt tctcgtacac cgccttccac ggcgcctgcc
     3181 aatgggcgtc ggcggccaga tccaccaccg cgtcacaccc ctcgacggct cgagtcaggc
     3241 ggcgggcgtt gcgggcgtcc acggccctga tccccgcctt ccggtcgccg ctgcggtcca
     3301 gcagcaccag gctgcagctc tccgccagca tcggcacgag cgccctgccc accaggccgc
     3361 ccgcaccgac gacggccacc ttcatgccca cggccgtcct cgctgcctgc acatcaga
//
LOCUS       DASYFY010000616         5636 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1148765, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000616 DASYFY010000000
VERSION     DASYFY010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5636
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1148765"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VGN19_12505"
     CDS             <1..525
                     /locus_tag="VGN19_12505"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEV7196755.1"
                     /translation="AVLVNTRGERFVDEQAHGYSGLAGVVQAQPGERAVMVWDDEAHL
                     TAQNSEMMRESAVAGALARADDVTTLAAALRLDPRALSTALEPRAGRRALTAPFHFAW
                     LTHGVLTTQGGAAVDPTGRVLRRDGSTVPGLRAGGGVAVGLAGATSGGYSSGTGLLSA
                     FGMGWIVGNELARA"
     gene            complement(612..1865)
                     /locus_tag="VGN19_12510"
     CDS             complement(612..1865)
                     /locus_tag="VGN19_12510"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase"
                     /protein_id="HEV7196756.1"
                     /translation="MTAEESTDQSPTIDPEHYREVMGHYPTGVTVVTGMSPDGDPIGM
                     VVGTFTSVSLDPPLVAFMPTTTSGTYALMRDSAAYCINVLAHDQLDLCRLMAVPRPGK
                     FDDVAWSMSEHGAPVLHDAVAHIHCRPRDVVEAGDHLIVLCEVRDMRVTRPVTPLLFF
                     QGGYGGFNPRGMSATGDADVIAAVQLAEVARPQVERIARQLACEAAVLVGVNDHELTT
                     AVSAYGGAAEMTAPLGDRVPLMPPLGEAYVAWAGDEVVEAWLRRASSQTPEMVGKYRR
                     RLAAVKERGFAVSSMCDESTPSYGDLKDAMLEYAAGGLTPARERAVRSVIADTSRFFE
                     TIDIDEERFYDLGSIVVPVLGPDGQVVLCLRATQLRTGVSGAEVLGWIAALKHAADAI
                     AEQFEGTGREDYATYLTEYPGNLMM"
     gene            2093..2728
                     /locus_tag="VGN19_12515"
     CDS             2093..2728
                     /locus_tag="VGN19_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196757.1"
                     /translation="MPRKTERRHRQGEESRSAILEATLAIAAERGYDGTTVALVQEAT
                     GLPASSIYWHFGSKDELLAATLEHSYRSWRASAPTWVPSAEPVQIGERIESRFQRAAG
                     AVTTSPQFWSLGLLLTLQQRVKEPAARRRYFEVRQDTETAITDWWSTVLASAAVEADP
                     ALPRRLAQLYMMLMDGLFIQVRTSTPKETKRLVSLVSAGLSRHLETMGMTA"
     gene            2725..3354
                     /locus_tag="VGN19_12520"
     CDS             2725..3354
                     /locus_tag="VGN19_12520"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEV7196758.1"
                     /translation="MTAAATGKRAVNDAPAPERSKDRILNAAAELARERGVAGATIAQ
                     VCQRSGLPVSSVYWHFDDQDHLFAEVIRTSFARWLVSVPSWEVAADTTLEEGLKRVLI
                     PSTRTLAEVPAFLRVGMQVLLESGEQNAKTREAFVDARNQVRLMIAAWLSSFLPTSMG
                     ADAAEDLATLVVAFTDGMLVGSQVYPDWHPEEFVELIAGTIAAAVDAAR"
     gene            complement(3383..4120)
                     /locus_tag="VGN19_12525"
     CDS             complement(3383..4120)
                     /locus_tag="VGN19_12525"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEV7196759.1"
                     /translation="MSVLARAALIVGAFGVDEPFLGVSDLSRRTGLAKATVHRLATEL
                     CTVRVLERSEAGGAYRLGSWLFELGEMVPHHRSLAEAAQPIMEDLLEATHERIHLAVL
                     DGVDVVYVKILGGRSVSVASREGGRLPAHATGVGKVILAYSPEAAVRSRIEAGLPRLT
                     PRTVATPGTLGRELQKIRDAGLGMDREESHLGVSCVAAPVFGADGHVRAGLSITGPTR
                     SVDPAKLGPAVRTAALTLSRVLRQSGL"
     gene            4311..5102
                     /locus_tag="VGN19_12530"
     CDS             4311..5102
                     /locus_tag="VGN19_12530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEV7196760.1"
                     /translation="MEQPARTEAATRLLAAYETKEAIAPLTATYEGMNLDDAYAIQLI
                     QLDALIERGRTVRGHKVGLTSVAMQELLGVDQPDYGHVLDDFFHAEHEPIPITPFLQP
                     RIEPEIGFVLKAPLRGPGVTVDDAIAAIDYVVPSLEIVDSRIKDWKIALLDTIADNAS
                     SGAVVLGATHAGIHDVDLALSECVFTRNGEVVGTGAGSAVLGSPVNALVWLANTVGAR
                     GVALEAGHVILPGAVCAMVPVEPGDTFTATFSGLGSVTATFSTES"
     gene            5104..>5636
                     /locus_tag="VGN19_12535"
     CDS             5104..>5636
                     /locus_tag="VGN19_12535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009078908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetaldehyde dehydrogenase (acetylating)"
                     /protein_id="HEV7196761.1"
                     /translation="MTTTHRRGTAAIVGPGNIGTDLMFKLLRRSETIEPRWMIGVDPS
                     SDGLRRAASLGLQASHEGVDWLLAQDERPDIVFECTSAKAHAANAPRYAEAGILAVDL
                     TPAAVGPYVCPPVNLDFNLDATNVNMITCGGQATTPMVRAVADVVPVSYAEIVASISS
                     RSAGPGTRANIDEFTETT"
BASE COUNT          859 a         1977 c         1961 g          839 t
ORIGIN      
        1 gccgtcctgg tcaacactcg gggtgaacgc ttcgtcgacg agcaggccca cggctactcg
       61 ggtctggccg gcgtcgtcca ggcccagcct ggggagcgcg ccgtgatggt gtgggatgac
      121 gaggcccacc tcaccgctca gaactcggag atgatgcgcg agtctgcggt ggccggtgcg
      181 ctggcgcggg ccgacgatgt gactactctg gccgccgcgc tacgcctgga cccgcgcgcc
      241 ctgtccaccg ccctcgagcc gagggcgggg cggcgagcgc tgaccgcgcc gttccatttc
      301 gcctggctca cgcatggggt cctcaccacc cagggtggtg ccgccgtgga cccgaccgga
      361 cgagtcctgc gccgcgacgg ctcgaccgtc cccggtctac gggcgggggg cggcgtggcc
      421 gtgggcctgg ctggagcgac gtcgggtggc tacagctcgg gcaccggcct actctcggcg
      481 ttcggtatgg gctggatcgt cggcaacgag ctggcgaggg cctgaccggt tcgtcagcac
      541 acgacccaga cggggccagc cgacgcggga atgcgggaca ggccgttggg ccaatggctc
      601 acagcatcgc gtcacatcat gaggttgccg gggtactcgg tgaggtaggt cgcgtagtcc
      661 tccctgcctg ttccctcgaa ctgctcggcg atggcgtccg ctgcgtgctt gagggcagcg
      721 atccagccga ggacctcagc gcccgagacg cccgtgcgca gctgcgtcgc ccgcaggcac
      781 agcacgacct gcccgtccgg ccccaggacg gggaccacga tggacccgag gtcgtagaac
      841 ctttcctcgt cgatgtcgat ggtctcgaag aagcgggagg tgtcggcgat caccgaacgc
      901 acggcgcgct cgcgcgcggg cgtcaggccg cccgcggcat actcgagcat ggcgtccttg
      961 aggtcgccgt agctcggagt ggactcgtcg cacatgctcg acacggcgaa cccgcgctcc
     1021 ttgacggccg cgaggcggcg ccggtatttc ccgaccatct cgggggtctg gctggacgcg
     1081 cgccgcagcc acgcctccac gacctcgtcg cctgcccacg cgacgtaggc ctcgcccaac
     1141 ggcggcatga gcggtacgcg gtcgcccagc ggtgccgtca tctcagcggc gccgccgtag
     1201 gcgctcaccg ccgtggtcag ctcgtggtcg ttgacgccga cgagcacggc ggcctcgcag
     1261 gcgagctggc gggcgatccg ctccacctgt ggtcgggcca cctcggcgag ctggacggcc
     1321 gcgatgacgt ccgcgtcccc ggtggcgctc atcccgcgcg ggttgaaccc gccgtagcca
     1381 ccctggaaga acagcagggg agtgacgggt cgggtgacgc gcatgtcgcg cacctcgcag
     1441 agcacgatga ggtggtcgcc ggcctcgacc acgtcccgcg ggcggcagtg gatgtgggca
     1501 accgcgtcgt gcaggaccgg cgcgccgtgc tcggacatcg accacgcgac gtcgtcgaac
     1561 ttgccagggc gcgggacggc catcagccga cacagatcca gctggtcgtg ggccaggacg
     1621 ttgatgcagt atgccgccga gtcgcgcatg agtgcgtagg tcccggacgt cgtcgtcggc
     1681 atgaaagcga ccaacggcgg gtccagggac accgaggtga acgtcccgac caccatgccg
     1741 atcgggtccc cgtcgggcga catgccagtg accacggtga cgccggtcgg gtagtgaccc
     1801 atcacttccc ggtagtgttc cgggtcgatc gtgggggact ggtctgtgga ttcctcggcg
     1861 gtcattgccg cagcctctct gtcagctacc ttcactgtag cgttcactac agtgaaggta
     1921 ggtcaactgc tacgattcgg caaggggttg gcgcgagaac acatggtttt cgctcatcct
     1981 tcgatacaca gctgacggag cctgcgcctt gcgttcgctc cagtgacgca ccgaatgagc
     2041 ggtcgcgccg acgcggaccc cgcgacgggt cccggtccag gaagggttgt tgatgccacg
     2101 caagaccgaa cgccggcacc gtcagggcga ggagtccagg tccgccatcc tcgaggccac
     2161 cctcgcgatc gcggccgagc gaggctacga cggcaccacc gttgccctcg tccaagaggc
     2221 gaccgggctg ccggccagct cgatctactg gcacttcggc agcaaggacg agctgctcgc
     2281 ggccacgctc gagcactcct accggtcctg gcgtgcctcc gcgccgacct gggtcccctc
     2341 ggccgagccg gtgcagatcg gcgaacggat cgagtcgcgg ttccagcgtg cggccggggc
     2401 ggtgaccacc tcgccgcagt tctggtcgct gggtctgctg ctcacccttc agcagcgggt
     2461 gaaggagccg gccgcccggc gccgctactt cgaggtccgc caggacaccg agaccgcgat
     2521 caccgactgg tggagcacgg tgttggcgtc cgcagcggtc gaggctgacc ccgcgctgcc
     2581 tcgtcggctg gcgcagctct acatgatgct gatggacgga ctcttcatcc aggtgcgcac
     2641 ctcgaccccg aaggagacca agcggctggt gtcgctggtg tcggccggcc tcagccgcca
     2701 cctcgagacg atggggatga cggcatgacc gccgcggcga ccggcaagcg ggcggtcaac
     2761 gatgccccgg cgcccgagcg ttccaaggac cggatcctca atgctgcagc cgagctcgcg
     2821 cgggagcgcg gtgtcgcggg cgccaccatc gcccaggtgt gccagcgctc cggactgccc
     2881 gtgagctcgg tgtactggca cttcgacgac caggaccacc tgttcgcaga ggtcatccgg
     2941 acgagcttcg cacgctggtt ggtctccgtc cccagctggg aggtcgcggc cgacaccacc
     3001 ctcgaggagg ggctcaagcg ggtactgatt ccgtcgacgc ggaccctggc ggaggtgccc
     3061 gccttcctcc gggtcgggat gcaggtcctg ctggagagcg gcgagcagaa cgccaagacc
     3121 cgcgaggctt tcgtcgacgc gcgcaaccag gtgcggctga tgattgccgc gtggctgtcg
     3181 tcgttcctgc ccacgagcat gggcgcggac gcggcagagg accttgcgac gctggtcgtc
     3241 gccttcaccg acggcatgct ggtcggctcg caggtctacc ccgactggca tcccgaggag
     3301 ttcgtcgagc tgatcgccgg caccatcgcg gctgccgtcg acgcggcgcg atgaacaggc
     3361 tccgccgcgc cgacgtcgtc ggtcaaagcc cgctctgacg aagcaccctg ctgagggtga
     3421 gcgcggccgt gcgcacggca ggccccagct tggcggggtc caccgagcgg gtgggcccgg
     3481 tgatcgacag cccggcccgc acatggccat cggcgccgaa caccggcgcg gccacgcacg
     3541 agacccccag gtgtgactcc tcccggtcca tccccagtcc ggcatcgcgg atcttctgca
     3601 gctcgcggcc cagtgtgccg ggggtggcga cggtgcgcgg ggtgagccgc ggcagcccgg
     3661 cctcgatccg cgaccgcacc gccgcttcgg gcgagtaggc caggatcacc ttgccgaccc
     3721 cggtggcgtg ggccggtagc cggccgccct cgcgcgaagc caccgacacg gagcggccac
     3781 cgaggatctt gacgtagacc acgtcgaccc cgtcgaggac cgcgaggtgg attcgttcgt
     3841 gggtggcctc gagcaggtcc tccatgatcg gttgcgccgc ctcggccagg gagcggtggt
     3901 ggggaaccat ctcgccgagc tcgaacagcc agctgccgag ccggtaggcg ccaccagctt
     3961 ccgagcgctc gaggacccgc acggtgcaca gctcggtggc gaggcggtgg acggtggcct
     4021 tggccagtcc cgtgcggcgg gataggtctg acacccccag gaacggctcg tccacgccga
     4081 acgccccgac gatcagggca gcccgggcca ggaccgacac cggcagactc tggacgctgg
     4141 cctcggcagc tcgcgagtga gccgggccgt tccgttcagt ggaacgcatt cgttgatcag
     4201 accacatcgg gacgggcatt gtcacggcag gctccagcag tggagccgag ccatcgacga
     4261 cgagcgccgt actgacaccc tcagggttcg cgtgcgacga agggagaacc gtggagcagc
     4321 cggcccggac cgaggcagcg acccgcctcc tcgcggcata cgagaccaag gaagccattg
     4381 cgccgcttac ggcgacgtac gagggcatga acctcgacga cgcgtatgcc atccagctga
     4441 tccagctgga tgccctcatc gagcgcggcc gcacggtcag gggccacaag gtgggcctga
     4501 ccagtgtggc catgcaggag ctgctcggtg tcgaccaacc tgactacggc cacgtgctgg
     4561 acgacttctt ccacgccgag cacgagccga tcccgatcac gccgttcctg cagccgcgaa
     4621 tcgagccgga gatcggcttc gttctcaagg ccccgctgcg ggggcccggt gtgactgtcg
     4681 acgacgcgat cgcagcgatc gactacgtcg tcccgtcgct ggagatcgtc gacagccgga
     4741 tcaaggactg gaagatcgcc ttgctcgaca ccattgccga caacgcatcc tccggcgcgg
     4801 tcgtcctcgg ggccacccac gccggcatcc acgatgtcga ccttgcgctc agcgagtgcg
     4861 tgttcacccg caacggtgag gtggtgggca ccggcgcggg cagcgcggtg ctcggctcac
     4921 cggtcaacgc cctggtctgg ctcgcgaaca ccgtgggtgc gcgcggcgtc gcgctggagg
     4981 ccgggcacgt catcctcccc ggggccgtct gcgccatggt ccccgtcgag cccggggata
     5041 ccttcaccgc caccttctcc gggctcggct cggtcaccgc caccttctcc acggagtcct
     5101 gacatgacga ccacccaccg ccgggggacc gccgccatcg tcggcccggg caacatcggc
     5161 accgacctga tgttcaagct gctgcggcgt agcgagacca tcgagccccg ctggatgatc
     5221 ggggtggacc cctcctccga cggtctacgc cgggccgcgt ccctggggct ccaggccagc
     5281 cacgaagggg tggactggct gctggctcag gatgagcgcc cggacatcgt cttcgagtgc
     5341 acgtcggcca aggcccacgc cgccaacgca ccccgctatg ccgaggcggg catcctggcc
     5401 gtggacctca cgccggcggc agtggggccg tacgtgtgtc cgccggtgaa cctcgacttc
     5461 aacctcgacg ccaccaacgt caacatgatc acctgcggtg ggcaggccac gacaccgatg
     5521 gtgcgggcgg tcgccgacgt cgtgccggtc tcgtacgccg agatcgtggc ctcgatctcg
     5581 agccggtccg ctggcccggg gacgcgcgcc aacatcgacg agttcaccga gaccac
//
LOCUS       DASYFY010000617         4785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_938047, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000617 DASYFY010000000
VERSION     DASYFY010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4785
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938047"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VGN19_12540"
     CDS             <1..278
                     /locus_tag="VGN19_12540"
                     /inference="COORDINATES: protein motif:HMM:NF015799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ANTAR domain-containing protein"
                     /protein_id="HEV7196762.1"
                     /translation="LQSSRTIGKAIGLLMEQLNLDDHEAFNHLTNLSQSSSVNLRDTA
                     AHLVRQSNDLRHMTKAPQSGHQKRSSALSLVPGLDADDHQARRYRRT"
     gene            313..729
                     /locus_tag="VGN19_12545"
     CDS             313..729
                     /locus_tag="VGN19_12545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196763.1"
                     /translation="MARVDPGDDGIRRFVVHHYRYDPERRERRDVVVAAFGNRREFDA
                     CLRSIQADLDRRRSAGEPVEGNEHAAGRIYEPGHLRRADTGHFLRRMIEHDVDPRPWI
                     QQEDLPRNMAVYGPGWSTKRPEASRLARLMRLLRIR"
     gene            complement(969..1310)
                     /locus_tag="VGN19_12550"
     CDS             complement(969..1310)
                     /locus_tag="VGN19_12550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196764.1"
                     /translation="MPVSTEPRPPGISTTPSPPTTSVTTSPEFSQASIAITSKLVRPG
                     ELVLRVDAPRHTSFRIGQDLTASVPCGSAPIVVADPVSYGVVCPAGGTGAKLVATIAY
                     HDFDYTFVKTL"
     gene            1670..2101
                     /locus_tag="VGN19_12555"
     CDS             1670..2101
                     /locus_tag="VGN19_12555"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEV7196765.1"
                     /translation="MPSAQRTITINRPVDEVFRFFSTPANDKSWRPAVKEITADGPPA
                     VGSQIHQVIAGPGGRGIPADIEVTAYEPGARYAFKVVAGPARPVGEFVFTPVADGTLV
                     QFSLSAELGGIKKLFMSGPVQKSMAGEMAGLDTAKRLIEQS"
     gene            complement(2135..2326)
                     /locus_tag="VGN19_12560"
     CDS             complement(2135..2326)
                     /locus_tag="VGN19_12560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196766.1"
                     /translation="MGKSEREGLSMGYRVRYRLRRMILQIYGPAQLGDSEDPLAKLAN
                     ERAAKVEAARSAAERRAAH"
     gene            2414..2860
                     /locus_tag="VGN19_12565"
     CDS             2414..2860
                     /locus_tag="VGN19_12565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7196767.1"
                     /translation="MPKTTATSPNLLQLDRQVCFALAVASRTVIGLYRPLLEPMGLTH
                     PQYLVMLALWEESPLRVADLAHRLSLEPATLSPLLKRLEANGMVTRERDPRDDRALAV
                     SLTTQGLAARRQAERVPRAIMDRLGMDVSQLEELRDSLTRVIDAAR"
     gene            2905..4641
                     /locus_tag="VGN19_12570"
     CDS             2905..4641
                     /locus_tag="VGN19_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017832503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEV7196768.1"
                     /translation="MTQETTEAVPGNATPGTTHDQWFRDAVVYQIYPRSFQDSNGDGI
                     GDLPGIISRLDYLQQLGIDVLWLSPIYASPQDDNGYDISDYQDIDPTFGTLADVDELI
                     AQAHARGIRIVMDLVVNHTSDEHPWFVESRSSKDNPKRDWYWWRPAREAVEPGSPGAE
                     PSNWESFFSGSVWQLDETTGEYYLHLFSRKQPDLNWENPEVREAVYAMMRWWLDRGID
                     GFRMDVINMISKVTSLPDAEPFGSGPLGDGSPHFLCGPRIHEFLQEMHREVFTGREGA
                     FLTVGEMPGVTVEQARLFTDPARGEVDMVFQFEHVGLDHGATKWDLRPLRLTDLKASL
                     GRWQAGLAEVGWNSLYWDNHDQPRAVSRFGDDGPAHRRNSATCLATLLHLHRGTPYVY
                     QGEEIGMANYPFASIDQFRDVESLNFHASAVAAGRPEAEVMTALRAVSRDNARTPVQW
                     DASPSAGFTTGTPWLAVNPDFCQWNVAAQRDDPRSVLAHHRRLIALRHELPVVALGDF
                     AMLLPEHEQVYAFTRSLDGETLLVVCNVSGTPQPLAELLPEAPGAELVLGNLEVDDPA
                     VLAPWEARVLRR"
     gene            complement(4655..>4785)
                     /locus_tag="VGN19_12575"
     CDS             complement(4655..>4785)
                     /locus_tag="VGN19_12575"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEV7196769.1"
                     /translation="TALVEAGALTPLVDRVYPLAETAAAVRHLVDGRATGKVVVAV"
BASE COUNT          788 a         1697 c         1579 g          721 t
ORIGIN      
        1 cgcttcagtc gagcaggacc atcgggaagg caatcgggtt gctgatggaa caactcaacc
       61 tcgacgacca cgaagccttc aaccacctga cgaatctgtc ccaaagttcc agcgtcaatc
      121 tccgtgacac tgcggcgcac ctggtcagac agtcgaacga cctgcggcac atgacgaagg
      181 caccacagtc cggtcaccag aagcgctcct ctgccctctc gctggtgcct ggcctcgacg
      241 ccgacgacca ccaagcccgg cggtatcgcc gcacctaaag cggcgtcggc ggagtcgccc
      301 tagtctcgtg acgtggcgag ggtcgatcca ggcgacgacg gcatccgtcg cttcgtggtg
      361 caccactacc gctacgaccc cgagcggcgc gagcgacgcg acgtcgtcgt ggcagccttt
      421 ggcaaccggc gggagttcga tgcgtgtttg cggtcgatcc aggccgacct cgaccgacgc
      481 cggagcgccg gcgagcccgt cgaaggcaac gagcatgccg cgggacgaat ctacgagccc
      541 gggcatctgc gccgcgccga caccggccac ttcctgcgtc gaatgatcga gcacgacgtg
      601 gaccccagac cctggattca gcaagaagac ctgccccgca acatggctgt gtacgggccc
      661 ggctggtcaa ccaaacggcc tgaagccagc cggttggcgc gactgatgcg ccttctccgc
      721 attcgttagc gcccgcggtc gccctccgcg gaagggcccc ggctctctcc aagggaccag
      781 ggaggcgggg tcagaccagc gtggccgcga gcgctcgggc ctgtcccgtc gtcaggtgtt
      841 gacggttggg ttgtccaccc aggtggttga tcgagtagag gaactgggcg acaccgtgtt
      901 ggggccttgg cctcctgccc gtggctgcga acgcgactgg aagccgcgct ggccgaacca
      961 catccggcct acagggtctt cacgaacgtg tagtcgaagt cgtggtaggc gatggtcgcg
     1021 accaacttcg ccccggtccc gcctgcggga cacaccaccc cgtagctcac cggatccgcg
     1081 accacgatcg gcgcggaccc gcagggcacc gatgcggtca gatcctgacc gatccgaaag
     1141 gaggtatgcc gcggggcgtc cacccgcagc accagctcac cagggcggac cagcttcgag
     1201 gtgatggcga tggacgcctg gctgaactcc ggcgacgtgg taacggaggt ggtcggtggc
     1261 gatggtgtgg tggatatgcc tggcggccgg ggctcggtcg aaacgggcac ggggcttgac
     1321 gacggcaacg ggctcggggt tacggtccgg ggcgctgggg ccggcccgtt cccgccgact
     1381 gaacaggccg acgcgagggc cagactcagt cccacgaccg tgctcgcggt tcccccggat
     1441 ctgctcaact cgcggtcccc ccggatcagc tcaatatgag gtggccagcg tagcgccggc
     1501 acacggcgtc agagagaagt catgcgaatc ttgaatagcc gcttgccaaa gtggctcccg
     1561 gcccgctaag tcgagccacg cgtgcctgcc tggaggcagc cgctattcca gccgaccagg
     1621 cagtggcaag atcaccaatg cggggtcccc cgccggagaa ggagaagcca tgcccagcgc
     1681 tcagcgcacg atcaccatca accgtcccgt cgatgaggtc ttccgcttct tcagtacccc
     1741 ggccaacgac aagtcctggc gcccggcggt caaggagatc actgcggacg ggccgcccgc
     1801 cgtcggctcg cagatccacc aggtgatcgc cggccccggc ggtcgcggca tacctgcgga
     1861 tatcgaggtg accgcctacg agcccggcgc ccgctacgcc ttcaaggttg tcgcgggtcc
     1921 tgcccgcccc gtcggcgagt tcgtcttcac ccccgtcgcg gatggcaccc tggtgcagtt
     1981 ctcgctgagc gccgagctcg gcggcatcaa gaagctcttc atgtcgggcc cagtgcagaa
     2041 gtcgatggca ggcgagatgg ccggactgga caccgcaaag cgcctcatcg aacagtccta
     2101 gccaaggaca gccgggacct gtcgactagc gcagctagtg cgcggcccgg cgctctgccg
     2161 ccgagcgcgc cgcctcaacc ttggcggcgc gctcgttcgc gagcttggcg agcgggtcct
     2221 ccgagtcgcc gagctgtgcg gggccgtaga tctgcaggat catccgccgg agtcggtacc
     2281 tgacccggta ccccatcgag aggccctcgc gctcactctt gcccacggca tacctctcaa
     2341 ggttgcggcc tatagttagt ggcctaactg tttgtccact aaccatagcc cgtcagcccc
     2401 tagactcgaa atcgtgccca agaccactgc cacatccccg aacctgctcc agctcgaccg
     2461 tcaggtgtgc ttcgcgttgg cggtcgcgtc gcgaacggtg atcgggctct atcgcccact
     2521 gctggagccg atgggcctga cgcacccgca atatctggtc atgctcgcgc tctgggagga
     2581 gtcacctctg cgcgtcgcgg acctcgccca tcggctcagt ctggagccag ccaccctgtc
     2641 gccgctgctc aagcggctgg aagccaacgg catggtcacc cgcgagcgag acccacggga
     2701 tgaccgtgcg ctggccgtgt ctctgaccac ccagggcctg gcagcccgac gccaagccga
     2761 gcgcgtaccc cgcgccatca tggaccggct ggggatggac gtgtcccagc tcgaggagct
     2821 gcgcgacagc ctgacccggg tcatcgacgc cgcccgctga acgtcccgtt gctggtgtca
     2881 ccccggcccg caagactgtc gcccatgacc caggagacga ccgaggcagt gcccggcaac
     2941 gcgacacccg gcaccaccca cgaccagtgg ttccgcgacg cggtcgtcta ccagatctat
     3001 ccgcgttcct tccaggacag caacggcgac ggcatcggcg acctgcccgg catcatcagt
     3061 cggctcgact acctccagca gctgggcatc gacgtcctgt ggctctcgcc gatctacgcc
     3121 agcccccagg acgacaacgg ctacgacatc agcgactacc aggacatcga cccgacgttc
     3181 ggcaccctcg ccgacgtcga tgagctcatc gcgcaagccc acgctcgggg catccggatt
     3241 gtcatggacc tcgtggtcaa ccacacctcc gacgagcacc cgtggttcgt ggaatcccgt
     3301 tccagcaaag acaacccgaa gcgcgactgg tactggtggc gtccggcgcg cgaggcggtg
     3361 gagcccggat cccctggcgc agagccctcc aactgggagt cgttcttcag cgggtcggtg
     3421 tggcagctcg acgagacaac gggcgagtac tacctgcacc tgttcagccg caagcagccc
     3481 gacctgaact gggagaaccc cgaggtccgc gaggccgtgt acgcgatgat gcgctggtgg
     3541 ctggaccgcg gcatcgacgg cttccgcatg gacgtcatca acatgatctc gaaggtgacc
     3601 tcgctgcccg acgctgagcc cttcggcagc gggccgctgg gtgacggcag cccgcatttc
     3661 ctatgcggac cgcggatcca cgagttcctc caggagatgc atcgcgaggt cttcaccggc
     3721 cgggagggcg cgttcctcac cgtcggcgag atgcccggcg tgaccgtcga gcaggcgcgg
     3781 ctgttcaccg accccgcccg cggcgaggtg gacatggtct tccagttcga gcacgtcggg
     3841 ctggaccacg gcgccaccaa gtgggacctg cgcccgctgc ggctcaccga cctcaaggcc
     3901 tcgctcggcc ggtggcaggc gggcctggcc gaggtcggct ggaactcgct gtactgggac
     3961 aaccacgacc agccgcgggc cgtgtcgcgg ttcggcgacg acggccccgc gcaccgccgg
     4021 aactcggcca cctgcctggc caccctgctg cacctgcatc gggggacgcc gtacgtctac
     4081 cagggcgagg agatcgggat ggcgaactac ccgttcgcct cgatcgacca gttccgggac
     4141 gtggagtcgc tcaacttcca cgcttccgcg gtggccgccg ggcggccgga ggcggaggtg
     4201 atgaccgcgc tgcgcgcggt gagccgggac aacgcccgca cgccggtgca gtgggacgcg
     4261 tcgccgtcgg ccggcttcac caccgggacg ccgtggctgg cggtcaaccc ggacttctgc
     4321 cagtggaacg tcgcggcaca gcgggacgac ccgcgctcgg tgctggccca ccaccggcgg
     4381 ctgatcgccc tgcgccacga gctgcccgtc gtcgccctcg gcgatttcgc catgctgctg
     4441 ccggagcacg agcaggtgta cgcgttcacc cgttccctgg acggcgagac gctgctcgtc
     4501 gtctgcaacg tctcggggac gccgcagccg ctggccgagc tgctgcccga ggctcccggc
     4561 gcggagctgg tgctcggcaa cctcgaggtc gacgaccccg ccgtcctcgc cccctgggag
     4621 gcccgcgtgc tgcgccggtg accggggccc gcgctcagac ggcgacgacg accttgccgg
     4681 tcgcgcggcc gtcgacgagg tgccgcacgg cggccgcggt ctcggcgagc gggtagacgc
     4741 ggtcgaccag cggggtcagc gcgccggcct cgacgagagc ggtga
//
LOCUS       DASYFY010000618         3207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_886253, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000618 DASYFY010000000
VERSION     DASYFY010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3207
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886253"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2249)
                     /locus_tag="VGN19_12580"
     CDS             complement(<1..2249)
                     /locus_tag="VGN19_12580"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7196770.1"
                     /translation="MGRPGAGAQPVGRRALVDEVTRSLADGGTVELVGDPGVGKTTVF
                     RAVIAANTADVDITHACQSAETGFGLVVVSDVLADLERLASSDGAPGLPPLLNRALDV
                     IVLRRAADELAVPLDGRLVGSTLAALLTQVAMRRSMLVAIDDLQWCDDESFAALRFAI
                     LRAKGGAVRWLTARRPDSPHTMPGSAQVTVPTLPAAATRDLIAVHLGRQLPPPTLWQV
                     WKTSGGNPMYALEIARALPADAPSVDDVTLPGTLRELVASRVRSQPATARRAMLDLAV
                     RGSVGSDFDRLPDLDPAHAARLVETTRGRTTFTHPLLTAGIIETSAPGAVRTARARAA
                     AAVRDPVMRARHLGLATTAADDVVAAELDAAVHVAASRGDVSSAAWISARAVALSEAD
                     PPPFTRLAAAAQWAASIYNPAAVGYAQDMVRNARTPTQQAQAWLALADALSDDMPRAL
                     EAVREGLRVEGADADVRARLLTQEGALLLVRGQHRAAAEVLHSALTVVDPGTPTWADL
                     VGELSMVQRIAGLSVDISLLRKAADLVHADLAPRPLNALLTWGLLAMWDDRHLEARES
                     LREVTLDAVGTAEEEQAAFHLSELDVRTGHVDAALGSASEMASREDGQPLAAALWVTA
                     MAAAWLGQEQTCRDAASRGQAVSHETGDGLFDMACKVAVGFLELTLGRPEAAWPLLAA
                     ACEALERQGFREPSCFPALPLAVEAAVAVGDGSEARRLLARLAEQGELLNSRWADASV
                     LRCQGHLVA"
     gene            2682..>3207
                     /locus_tag="VGN19_12585"
     CDS             2682..>3207
                     /locus_tag="VGN19_12585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196771.1"
                     /translation="MYSFKIEHNHTHSGAGAHVSADSASGLPAGASTGGGPKVRAMKG
                     VQHRRGLLVAVLVAALTSMSSLTSAHAGPSAPAVFSGQARSLVNAVVVACAGRASCAL
                     ASVSEEMIAAGVQETTAVLRVGSGAHDLIGLHRVVAVDAAGRPLAGRRAVMLLHGDVW
                     GFDAAFAGQLGTGTR"
BASE COUNT          461 a         1123 c         1120 g          503 t
ORIGIN      
        1 tcagcgacca ggtgcccttg acaacgcaga accgacgcgt cggcccaccg actgttcagc
       61 agctccccct gttcggcgag ccgcgccagc agacgtctcg cttcggaccc atcgccgacc
      121 gccaccgcgg cctcgacggc caaaggcagc gcggggaagc atgacggctc acggaaccct
      181 tgcctctcta gcgcttcaca cgccgccgct agcagcggcc acgccgcctc cggtctcccc
      241 agggtcagct cgaggaaccc cactgccacc ttgcacgcca tgtcgaacag gccgtcgccg
      301 gtctcatgcg acaccgcttg cccgcggctg gccgcgtcac ggcaggtctg ctcctggccc
      361 aaccacgcgg ctgccatggc cgtgacccac aatgcggccg cgagcggctg gccgtcctcg
      421 cggctggcca tctctgacgc cgagcccagt gccgcgtcga cgtgacccgt ccgcacgtcg
      481 agctcgctga ggtggaacgc cgcctgctcc tcttcggctg tccctactgc gtcgagggtc
      541 acctcacgca acgactcgcg ggcctcaagg tgccggtcgt cccacatggc cagcaagccc
      601 caggtgagca gcgcgttcaa tggccgtggc gccaggtcgg cgtggacgag gtctgcggcc
      661 ttgcgcagca acgaaatgtc caccgacagg ccggcaatcc gctgcaccat cgacagttcg
      721 cccaccaggt cggcccacgt cggcgtcccc ggatccacca cggtcagcgc ggagtggagc
      781 acctccgctg ccgcccggtg ctgccctcgc acgagcagga gtgccccctc ctgggtcagc
      841 aaccgagcac gcacgtcggc gtcggcccct tcgaccctca agccctcacg aaccgcctcg
      901 agcgcccttg gcatgtcatc gctgagcgcg tccgcgagcg ccagccacgc ctgagcctgc
      961 tgcgttgggg tccgggcgtt gcggaccatg tcctgggcat acccgaccgc tgccgggttg
     1021 tagatgctcg cggcccactg ggctgcggca gcaagccggg tgaacggggg tgggtcggcc
     1081 tcactgaggg cgacggcccg ggccgagatc caggcggcgg aggagacgtc gccgcgactg
     1141 gccgcgacgt ggacggccgc atcaagctcc gcagcgacga catcgtccgc tgcggtcgtg
     1201 gctaagccca gatgcctggc tcgcatgacc gggtcacgaa ccgctgccgc ggccctggcc
     1261 cgagcggtgc gcactgctcc aggtgctgat gtctcgatga tgcccgcggt cagcagcggg
     1321 tgggtgaacg tggtccggcc tcgggtcgtt tcgaccagtc ttgccgcgtg cgcggggtcg
     1381 aggtcgggga gcctgtcgaa gtccgagcca acgctgccgc gcacggccag gtcgagcatc
     1441 gcacgacggg cggttgcagg ctgcgagcgg acccgtgatg cgaccagctc acgcagggtc
     1501 ccgggcaggg tcacatcgtc gactgatggt gcgtcggcag gtagggcccg ggcgatctcg
     1561 agggcgtaca tcgggttccc gccgctggtc ttccagacct gccacagcgt gggcggggga
     1621 agctgacggc ccaggtgaac ggcgatcagg tcacgcgtcg ccgcggccgg caacgtcgga
     1681 actgtgacct gcgctgaccc gggcatggtg tgtggcgagt ccggtcgccg agcggtgagc
     1741 cagcggactg ccccgccctt ggctcgcagg atggcgaagc gcagcgccgc gaacgactcg
     1801 tcgtcgcacc actgaaggtc gtcgatcgcg acgagcatgc tgcggcgcat ggcgacctgg
     1861 gtgagcagcg ccgccagggt cgacccgacc aggcgcccgt ccagcgggac cgcgagctcg
     1921 tcggcggccc gacgcagcac gatgacgtcc agggcgcggt tcagaagcgg cgggaggccg
     1981 ggggcgccgt ctgagctcgc gagtcgttcc aggtctgcca ggacgtcgga tacgacgacg
     2041 agtccgaacc cggtctcggc actctgacag gcgtgcgtga tgtcgacatc cgccgtattc
     2101 gcggcgatga cagcgcggaa caccgtcgtc ttccccaccc cagggtcgcc gaccagctca
     2161 accgtcccgc cgtccgcaag gcttcgggtg acctcgtcga ccagggcgcg gcggcccact
     2221 ggttgcgcgc cagcgcccgg tctgcccatc accgccccct tttgcgcccg gagctcccgt
     2281 cggcaggggc gttacgggag ctgggtgtgt gaccagcgtg ccacgcaacg cgtgccggtg
     2341 ggtgctgtag cggtcattga cacgtgcttt ccccgatgcc ccccggaggg ctgttctcta
     2401 ggttcgtgcg tgggcgagcg tcattgcgcg tcgccgatca cggacaggct cgtgcgcgcc
     2461 tcgcggctcc tagttgattg gacggtcctg gtgtgcactt tgtgcaacgt ggatgccctc
     2521 agcagctgtg cgaagcacac ggcctgccgt gtttacgcct attgacgtac tttctcgtgg
     2581 cgcttgggtc gcatgctggg tgctgggcgt aggggggttc ctcgcccgct tcctcgcccc
     2641 gggatgtcca gcgactttcg agtggagacg accgtgagct catgtacagc ttcaagatcg
     2701 agcacaacca cacccacagt ggcgcgggcg ctcatgtgtc ggcggacagc gcgagtgggc
     2761 tgccggctgg agcatcgacc gggggcggcc ccaaggtccg agcgatgaaa ggggtccagc
     2821 accgccgggg tctgctcgtg gcagtgctcg tggcggccct caccagcatg agttcgctga
     2881 catcggccca cgctgggccc tcggcacctg ctgtcttcag cggacaagct cgctcgctcg
     2941 tcaacgccgt ggtagtcgct tgcgctggtc gagcgagctg cgcgttggcg tcggtcagcg
     3001 aagagatgat cgcggccggc gtccaggaga cgacggcggt gctgcgcgtt ggctcagggg
     3061 cccacgatct gatcggcctg caccgggtgg ttgcagtcga cgcagccgga cgccccctgg
     3121 cgggacgccg cgcggtgatg ctcctgcacg gcgatgtgtg gggcttcgac gcggcgttcg
     3181 ccggccagct cggcacaggt acacggg
//
LOCUS       DASYFY010000619         5003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_675577, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000619 DASYFY010000000
VERSION     DASYFY010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5003
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675577"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            601..975
                     /locus_tag="VGN19_12590"
     CDS             601..975
                     /locus_tag="VGN19_12590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196772.1"
                     /translation="MSSGLGRTVQPIASSIGCDWGTRLDDPATTLVTIRMSASHAAYD
                     TQLETSVKQHRVVFGTGADANFRPGTALWVAAGEPIGSGKSRVTAGADTYIVVARTAL
                     GVSDDRGRAIALEIAAAANRRQ"
     gene            1088..2446
                     /locus_tag="VGN19_12595"
     CDS             1088..2446
                     /locus_tag="VGN19_12595"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7196773.1"
                     /translation="MRTFDLAVIGLGPGGEHVAGSLAQAGLDVLGVDHGLVGGECPYW
                     GCVPSKMMLRAAGALEEARRVPQLAGEVGTVTPRWSLVADRIRDEATDNWDDTVAVDR
                     FTGKGGTFVRGTGRVTSANTLEVDGVAYGVRQGIVVATGTRPTIPPIPGLHEVEYWTN
                     REVMRAAELPKSLTVLGGGAIGVEISQALARFGVQVVIVESAPGLLALEEPEAARAVE
                     DSLRQDGVTIRTGARADKVSANGNAVAVTLSDGSVLSSDRLLVATGRHVDIGDVGLDA
                     VGVDPHARAVPVDEWGRVGPGVWALGDITGHGAFTHMSMYQAGVVIRDVLGQGGPPAD
                     YRAIPRVTFTDPELGSVGLSEAQAREALDHVLVGTSEVSSSTRGWIHKTGPQGIIKLV
                     ADGDRGVLVGGTAMGPAGGEVLGLITLAVHAQVQLDQLRSMIYAYPTFHRAVEGALSA
                     LG"
     gene            2666..4300
                     /locus_tag="VGN19_12600"
     CDS             2666..4300
                     /locus_tag="VGN19_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009079605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7196774.1"
                     /translation="MNRRFGIVGAVGVAASLMLASAPAQAHSGATSGTTAATQTAAYT
                     PPPIVWGPCSDPTLQQFGAQCGMLTVPLDYAHPSGTKIQLAVSRVTHKTAHSQGVMLV
                     NPGGPGGSGLIFSIYQSFVPKGAGMSYDWIGFDPRGVGSSVPSLSCDGNYFGFNRPYF
                     VPVTLQLEQQWMTKVKNYTAACKVAGGALLNHIKTTDSVADMESIRIALGQSKINFYG
                     FSYGTYLGQVYATLHPNQVRRFVLDSNVDPRKVWYQANLDQDYAFNRNLGLYFNWVAK
                     HDNVYHLGTSGAAILRTYYRILNQLRAHPQAGGLVGPDEWTDAFSGAAYYVYGWEDTA
                     NALAAAVIGGDYTGIRDLYVASSGGQGPGADNGYAVYLAVQCTDASWPQDWSTWERDN
                     NRVYRAAPYLTWDNAWFNAPCRGWPAKPGTPVTVTGEHVPAMLLIDETNDAATPYPGS
                     LYVRSLFTKSVLIEGVGGTTHAGSLSGVACTDNRIAAYLATGALPERVSGNRSDVKCP
                     PVPQPNPTPATARMASTQLAGASFGRQLVGIIGHRG"
     gene            complement(4321..>5003)
                     /locus_tag="VGN19_12605"
     CDS             complement(4321..>5003)
                     /locus_tag="VGN19_12605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5995 family protein"
                     /protein_id="HEV7196775.1"
                     /translation="TPQRLFLETYRRTTLAVGKAIDDAQFEDPQWVDRWDVVFADLYL
                     AALDLDLAGSSEVSRPWRLAFDAPAALPALRHVLLGINAHINYDLPQALLAVISDDEF
                     ADPVVVARRGRDHERIDGVLSSRVAAEDDELGAVSTLTVVDRLLQPLNRLSSKRFLRE
                     ARQKVWHNTVELQRARLAGEREYAVRLAELEVLSAARIADLLAPGQVLLRLAVAGFGV
                     TLPPARLP"
BASE COUNT          831 a         1691 c         1718 g          763 t
ORIGIN      
        1 gcctatatgg cggcggaggc gggtatgccg gtgacgccgg tgttgtgcct cgccggtgcg
       61 cacgaagccg agttcggcga gccacggatg ctgcgaggag tctgggtcgt cccggtggct
      121 cgtcttgtgt actggctgaa ctcccggacg gtggtgttgg atcgggaggc ggcggggcgg
      181 gccgtcactc gggccatgac cgacttccct tcaaccacga cggatccagc gcttctggcc
      241 gccataggca acgcggccct atctgccaag tcaggacggc ggagaagtgc cccggtccga
      301 cggacgagtg cgcccaaccc acagcgacgc agtgcgccac cgagaccggc gcggcgggcg
      361 cggcgggcgc gctccgctgg atccgagctc cgtcgtggcg tggcggccct gatctggatc
      421 tcgctcggct tggggctcct gtatgggttc gggcccaagc tcatcactgc attcgttcaa
      481 ggtctcacat ccggagcagg catctcggcg agccgtcaac cgcctggtcc aagcgtgagc
      541 ccgatcggag caggaccggc cctggcctcg actgactgcg ctcgcgtgac ggcggcagag
      601 gtgagttccg gactggggcg aacggttcag cccatcgcga gcagcatcgg atgtgactgg
      661 ggcacgcgcc tggacgaccc cgcaacaacc ctggtgacga ttcggatgag tgccagccac
      721 gcggcatacg acacgcagct tgagacgtcg gtgaagcagc atcgggtcgt tttcggcacg
      781 ggggctgacg cgaacttccg tccgggcacg gcgctgtggg ttgccgccgg tgagccgatt
      841 ggtagcggga agtcccgtgt caccgctggg gctgacacct acatcgtggt cgcccgcacg
      901 gccctcggag tctccgatga ccgcggccgc gcgatcgcgc tggagatcgc cgccgccgcc
      961 aaccgccgcc agtaggactg tctgacacct gacccggcgc tttgagccca taggacagcg
     1021 gggtgtggac aagcgaacct tgggggtgcc agcctgaccg aaggttttag gacgaaggga
     1081 ccacacggtg cgcacattcg acctcgcggt gatcgggttg ggtccgggtg gcgagcacgt
     1141 cgcaggctcc ttggcgcaag cgggactcga cgtactcggc gtcgaccacg ggctcgtggg
     1201 gggcgagtgc ccgtactggg gctgtgtccc ctccaaaatg atgctccggg cagccggcgc
     1261 gctcgaagag gcccgccggg tcccacagtt ggccggagaa gtcgggactg tgaccccacg
     1321 ttggtcgctg gtggccgacc gtatccgcga cgaggcgacc gataactggg acgacacggt
     1381 cgcagtcgac cggttcaccg gcaagggggg cacctttgtg cgcggcaccg gtcgggtcac
     1441 cagcgcgaac accctcgagg ttgacggggt cgcttacggc gttcggcaag ggatcgtggt
     1501 cgccaccggc acccgaccca ccatcccccc gatcccgggt ctgcacgagg tggagtactg
     1561 gacgaaccgt gaggtgatgc gcgccgcgga gctgccgaaa tcgctcaccg tgctgggcgg
     1621 gggcgccatc ggggtcgaga tcagtcaggc attggcccgc ttcggcgtcc aggtcgtcat
     1681 tgtggagagc gcgcccggcc tgctcgctct ggaggaacca gaggccgccc gcgcagtgga
     1741 ggactcgctg cgccaggacg gggtgaccat ccgcaccggc gcgcgagccg acaaggtcag
     1801 cgcgaacggc aacgcggtgg cggtgaccct gtcggacggg tccgtgctga gcagcgatcg
     1861 gctcctggtg gcgaccggtc gacacgtcga tatcggcgac gtgggtctgg acgcggtcgg
     1921 tgtcgacccc cacgcccgcg cggtgcccgt cgacgagtgg ggacgggtcg ggccgggggt
     1981 gtgggcgctg ggagacatca ccgggcacgg ggcgttcacg cacatgtcga tgtaccaggc
     2041 cggcgtcgtc atccgtgacg tgctcgggca gggcggcccc ccagccgact atcgcgcgat
     2101 cccgcgggtg accttcaccg acccggagct tggctcggtc ggcctcagcg aggcgcaagc
     2161 gagggaggcc ctcgaccacg tgcttgtcgg gacgagcgag gtgagctcct ccacgcgagg
     2221 gtggatccac aagaccggcc cccagggcat catcaagctg gtcgcggacg gcgaccgagg
     2281 cgtcctcgtc ggcggcaccg cgatgggacc ggccggtggc gaggtgttgg gcctgatcac
     2341 gttggccgtc catgcccagg ttcagttgga ccagctgcga tccatgatct acgcgtaccc
     2401 gaccttccac cgtgccgtcg agggcgccct cagcgcactt gggtgagccc ctatggcggt
     2461 ccgatcgcca cctctgcaga cccccggacg tgccctcagc cgaccacccc aaggactccg
     2521 ccaaccgcgg caagtggtgg tgtctgacgg ctgacgcgac gcttcgaggc catacgtcaa
     2581 cagggtgagg actagcgaac ctggcggtgc cagcctggcc aagggcttat cgcccttggg
     2641 gagaaggtcg catcggggag gaagtatgaa cagaaggttc ggcatcgtcg gggccgtcgg
     2701 ggtcgccgcc agtctcatgc tcgctagcgc accagcgcag gcgcactcgg gcgcaacgtc
     2761 cggcacgacc gccgcgactc aaaccgcggc atacaccccg ccgccgatcg tgtgggggcc
     2821 atgcagtgac ccgacgttgc agcagttcgg cgcccagtgc ggaatgctca cggttccgct
     2881 ggactacgcc cacccgagcg gcaccaagat ccagctcgcg gtatctcgag tgacccacaa
     2941 gaccgcccac tcccagggag tcatgctggt caacccaggc ggcccgggag gctccggctt
     3001 gatcttctcg atctaccagt cgttcgtccc caaaggtgcc ggcatgtcct atgactggat
     3061 tggcttcgac ccgcgaggcg tcggatccag cgtcccgtcg ctgagctgcg acggaaacta
     3121 cttcggtttc aaccggccct acttcgtccc ggtcaccctc cagctcgagc agcagtggat
     3181 gaccaaggtg aagaactaca ccgcggcgtg caaggtcgcc ggtggcgcgc tgctcaacca
     3241 catcaagacc accgactccg tcgcagacat ggagagcatc cggatcgcgc tcggccagtc
     3301 gaagatcaac ttctacggct tctcctacgg cacctacctc gggcaggtgt acgccaccct
     3361 gcacccgaac caggtgcgcc gcttcgtcct ggacagcaac gtcgacccgc gcaaggtctg
     3421 gtaccaggcc aacctcgacc aggactacgc cttcaacagg aacctgggcc tctacttcaa
     3481 ctgggtcgcc aagcacgaca acgtctacca cctcggcacc agcggcgcgg ccatcctgcg
     3541 cacctactac cgcatcctga accagctgcg cgcacacccg caggctggtg gtctggtcgg
     3601 tcctgacgag tggaccgacg ccttttccgg cgcggcctac tacgtctacg ggtgggagga
     3661 caccgcgaac gcgctggcgg ccgcggtcat cggtggcgac tacaccggga tcagggacct
     3721 gtatgtcgcc tcgagcggcg ggcagggtcc cggagcggac aacggctatg cggtgtacct
     3781 cgccgtgcag tgcaccgacg ccagctggcc gcaggactgg tcgacctggg aacgcgacaa
     3841 caacagggtg tatcgcgcgg cgccgtacct cacctgggac aacgcctggt tcaacgcccc
     3901 atgccggggc tggcccgcaa agccagggac cccagtgacc gtcaccggtg agcacgtgcc
     3961 ggcgatgctg ctcatcgacg agaccaacga cgcggccacc ccgtacccgg gcagcctcta
     4021 tgtccgcagc ctgttcacga agtccgtcct catcgaagga gtcggtggca ccacccacgc
     4081 cgggtccctg tctggtgtgg cgtgtacgga caacaggatc gcggcctacc tcgcgaccgg
     4141 agcgttgccg gagcgggtgt ccggtaaccg ctcggacgtg aagtgtccgc ccgtcccgca
     4201 gcccaacccg acgccagcga ccgcccggat ggcgagcacc cagctcgccg gggcgtcctt
     4261 cggaaggcag ctggtcggga tcatcgggca caggggctag ccgcaaggaa cgaacgagag
     4321 tcagggcagt cgggctgggg gaagcgtcac gccgaaccca gccacggcta gccgcagcag
     4381 cacctgccca ggcgccaaca ggtctgcgat gcgcgcggca ctcagcacct cgagctcggc
     4441 cagtcgcacg gcatactccc gctcgccggc gaggcgcgcc cgctggagct cgacggtgtt
     4501 gtgccacacc ttctgtcgcg cctcccgcag gaatcgcttg gagctcaagc ggttcagcgg
     4561 ttgcagcagc cggtcgacca ccgtcagcgt cgataccgcg cccagctcgt catcctcggc
     4621 ggcgacgcga ctcgacagga cgccgtcgat ccgttcgtgg tcacgaccac gccgtgccac
     4681 gaccacaggg tccgcgaact cgtcgtcgct gatcactgcc aacaaggctt gtgggaggtc
     4741 gtagttgatg tgcgcgttga tgcccagcag cacgtgtcgc agggccggga gtgcggccgg
     4801 agcgtcgaag gccagacgcc acgggcgcga cacctcggaa ctgcccgcga ggtccaggtc
     4861 caaggcggca aggtagaggt cggcgaacac cacgtcccac cggtccaccc attgcgggtc
     4921 ctcgaactgc gcgtcgtcga ttgccttccc gacggcgagc gtggtcctgc ggtaggtctc
     4981 gaggaacagt ctctgggggg tgc
//
LOCUS       DASYFY010000620         5580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_359367, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000620 DASYFY010000000
VERSION     DASYFY010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5580
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359367"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..748
                     /locus_tag="VGN19_12610"
     CDS             <1..748
                     /locus_tag="VGN19_12610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006945293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEV7196776.1"
                     /translation="SSCRQYREDLALAQEQAAEQGHDVQVDKVRPYVNHPGFARANSR
                     LVTEAVRELRRDGVEPSDIRLLFVTHSIPTAMDDTSGPGDLEGNAYAHQHVALGAAIT
                     AEVNATLELDLDGELVFCSRSGPPSQPWLEPDVNDRLEELAGEGATAVVVAPIGFVSD
                     HMEVVYDLDTEAAATAQRLGLRMVRVPTVGTDPEFVSGLVDLVEERAAEARGEQPTRP
                     AWPGAALPSLCPAGCCPNLRQGKPALCGRD"
     gene            750..1625
                     /locus_tag="VGN19_12615"
     CDS             750..1625
                     /locus_tag="VGN19_12615"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007925477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEV7196777.1"
                     /translation="MGISSLPTPSEDELYELHRLALELAQEAGRLIVEERPADLGVAH
                     TKSTATDVVTIMDQRAQDLLRTRLRDARPQDGFLGEEEGGSSTRSTITWVVDPIDGTV
                     NYLYGIPAYAVSVAAVVGDPSVPGKWRPVAGAVVNPVTRELFHARLGGGAWLRVGDGP
                     DRSLVMGEPPQLSQALAGTGFGYDAGRRAWQARMLVEVIPQVRDIRRIGSAALDICGV
                     AVGTLDCYFERGLNPWDLAAAWLVLTEAGGEFTGLVGGPPGAAMVVGAALPLHSALEA
                     AVRAAADAAGPEAGG"
     gene            complement(1634..1819)
                     /locus_tag="VGN19_12620"
     CDS             complement(1634..1819)
                     /locus_tag="VGN19_12620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196778.1"
                     /translation="MTEFHAEITERATRAVQSLHTAQESGDDYLVAVREAELEGLARL
                     ADEHGLRIPQLAEYTAA"
     gene            2142..2441
                     /locus_tag="VGN19_12625"
     CDS             2142..2441
                     /locus_tag="VGN19_12625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013116932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4193 domain-containing protein"
                     /protein_id="HEV7196779.1"
                     /translation="MATDYDAPRKTDDELSEDSIEELKSRRVDKSASSVDVDETEQAE
                     GFELPGADLSGEELSVRVLPRQADEFTCSRCFLVHHRSQLAKEVNGQMVCRECAA"
     gene            2495..2974
                     /gene="dut"
                     /locus_tag="VGN19_12630"
     CDS             2495..2974
                     /gene="dut"
                     /locus_tag="VGN19_12630"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013349350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEV7196780.1"
                     /translation="MTGPSRVAVPIRRLDGDLPVPSYAHPGDAGADLYAATEVTLEPG
                     ERALVPTGVALALPAGFVGLVHPRSGLAAKHGITIVNAPGTVDAGYRGEILVNLVNLD
                     PREPFTVHRGDRIGQLVVQQVAIVEFVEVDSLDDTSRGDTGHGASGGFGERIQTAKD"
     gene            2982..3740
                     /locus_tag="VGN19_12635"
     CDS             2982..3740
                     /locus_tag="VGN19_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3710 domain-containing protein"
                     /protein_id="HEV7196781.1"
                     /translation="MSIFRRSKATNDEQVEPTGTEVDAPAGNDSAGDDSVAGDSVANG
                     GPFDSSEVDLRGDERLDLGALRIRGVAGMELRLEVEEETQQVVGATAVIGDSAVQLQA
                     FAAPRSAGIWESIREEIAESIVGQGGTADEEAGELGHELRTRMPSAGPDGRTVFAPAR
                     FVGVDGPRWFLRAVFSGRAAIDDEAAAPLMAVVRDTVVVRGDAAMAPREMLVLRLPEE
                     ATVPSDDLPDAEPGPGHTDDLRPFERGPEITEVR"
     gene            3748..4149
                     /locus_tag="VGN19_12640"
     CDS             3748..4149
                     /locus_tag="VGN19_12640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEV7196782.1"
                     /translation="MAVHTTGETHQRNPLVRLGERLTKSVTQLEADELKEDSVRLGCT
                     PMNQLADRQLATVSGTVRAVTLRPRVNVPALVVDLYDGSRTINLVWLGRRTIGGIEPG
                     RYLRATGRVTYCRGIPTIFNPAYEIVPPRGH"
     gene            4139..4966
                     /locus_tag="VGN19_12645"
     CDS             4139..4966
                     /locus_tag="VGN19_12645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3159 domain-containing protein"
                     /protein_id="HEV7196783.1"
                     /translation="MATDPAKADDTGSVLTEVEVPTVEALIRHRLSTVLGGWRGSLET
                     TVPTLAFVLSWSWRHDATTSLVAAGAVTLALALVRLAQRQSAHFVLGAALATGVAAFF
                     VLRSGRAEDAFLPSLIKSSAFGVGALISAALRWPVVGFMVSAGDPYLAEDPFGWRRDR
                     GVVRVCQRLTMVLVVLYAVRLAVMLPLYLASKVAWLSVASVVLGWPLWLAALGVMAAI
                     LLRGRTPQQPPGRLLTGEWASTESVGSTGSDPSTESVGSTRSDPSTESDHSAPRGTR"
     gene            complement(4939..>5580)
                     /locus_tag="VGN19_12650"
     CDS             complement(4939..>5580)
                     /locus_tag="VGN19_12650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEV7196784.1"
                     /translation="IARELLHNGHSVLLVDKDADDVQAGRVPEASWLLADACEITALH
                     EAGLAECDVVVAATGDDKVNLVLSLLAKTEFGVPRTVARVNNPKNEWMFDEAWGVDVA
                     VSTPRLMTALVEEAVSVGDLVRIFQFQQGKATMVELTLPADSPYAGKRVGDVTFPGET
                     VLVGIIREDHPIAPSRDDSLEPHDELLFISTPEFEDELESMLSPSQRVPRGAE"
BASE COUNT          833 a         1884 c         1992 g          871 t
ORIGIN      
        1 ctcctcgtgc cgtcagtatc gcgaggacct tgcgctggcc caggagcagg cggccgagca
       61 gggacacgac gttcaggtcg acaaggtgcg gccgtacgtc aaccacccag ggttcgcgcg
      121 ggcgaacagc cggctggtga ccgaggcggt gcgcgagctg cgtcgcgacg gggtcgagcc
      181 gtccgacatc cggctgctct tcgtcacgca ctccattccc accgcgatgg acgacacctc
      241 gggtcctggc gaccttgagg gcaacgccta cgcgcaccag cacgtcgccc tcggtgcagc
      301 gatcaccgcc gaggtcaacg ccaccctcga gctcgacctc gacggcgagc tggtgttctg
      361 ctcgcggtcc ggtccgccga gccagccctg gctggagcct gacgtgaacg accgactcga
      421 ggagctggcg ggggagggcg ccacggccgt ggtggtagcg ccgatcgggt tcgtgtcaga
      481 ccacatggag gtggtctatg acctggacac cgaagccgcg gcgacggcgc aacggctggg
      541 gttgcggatg gtgcgggtgc ccaccgtcgg cactgacccc gagttcgtct ccgggctcgt
      601 cgacctggtc gaggagcgcg ccgccgaggc gcgtggcgag cagccgaccc gacctgcgtg
      661 gcctggggca gccctgccgt cgctgtgccc ggctgggtgt tgtccgaacc tgcgacaggg
      721 caagccggct ctgtgcggtc gggactgacg tgggcatctc gagtctgccc acgccgtcgg
      781 aggacgagct ctacgagctc catcgcctgg ccttggagct ggcgcaggag gccggccgcc
      841 tcatcgtgga ggagcgcccc gcggacctcg gggtggcgca caccaagtcc acggcgaccg
      901 atgtcgtgac gatcatggac cagcgcgccc aggacctcct gcgcacgcgc ctgcgcgacg
      961 cccgtcccca ggacggcttc ctcggcgagg aggagggcgg ctcatcgacg cgctcgacga
     1021 tcacctgggt ggtcgatccc atcgacggca ccgtcaacta cctctacggc atccccgcgt
     1081 atgccgtgtc cgtcgccgca gtggtcggcg acccctcggt ccccgggaag tggcgtcccg
     1141 tggcgggagc ggtggtgaac cccgtgacgc gcgagctctt ccacgctcgg ctcggtgggg
     1201 gcgcgtggtt gcgcgtcggc gacggtccag accggtcatt ggtcatgggg gagccgccgc
     1261 agctgagcca agcgctggcc ggaacggggt tcggctacga cgcaggtcgg cgggcctggc
     1321 aggcccggat gctcgtggag gtgatccctc aggtgcggga catccggcgg atcggcagcg
     1381 ctgccctgga catctgtggc gtcgcggtgg ggaccctaga ctgctacttc gaacgagggt
     1441 tgaacccgtg ggacctcgct gcggcctggc tggtcctcac tgaagcaggg ggcgagttca
     1501 ccgggctggt tgggggtccg cccggggcag caatggtggt cggcgcggca ctgccactgc
     1561 actctgccct cgaagcggcc gtccgcgcgg ctgccgacgc cgccggccct gaggccggcg
     1621 gttagtcagc cggtcaggcg gcggtgtact cggccagctg ggggattcgc aggccgtgct
     1681 cgtcggcgag gcgcgccagg ccttccagct cggcctcccg caccgcgacg aggtagtcgt
     1741 cgccggattc ctgagccgta tgtagcgatt ggacagcgcg ggtcgcgcgc tcggtgatct
     1801 cagcatgaaa ctcggtcatg gtgcacccct ctcggtagtg cgacctcagg tcgcacgggt
     1861 cgggctgggt caagccggag gtaggactct acgggtgcgc gggccgtgag ggggaattga
     1921 gtgatccgat ttgggtgaat cttgagtgaa cccagacggt ccgtgggccc cctcggattc
     1981 cccaccgtgg acgtgatggt gacgtgcgtt cccggatagg gcacaatccc cgcctgcagt
     2041 gggcacaaaa ccacggcgat ctgcgttaca cgggcgacag gtcccccgga cccttccggc
     2101 gggcccacga ggcgacaaat tcagggagag cgacagcgaa aatggcgact gactacgacg
     2161 cgccgcgcaa gaccgacgac gagctgtccg aggactcgat cgaggagttg aagtcccggc
     2221 gcgtcgacaa gagcgcatcc agcgtggacg tcgacgagac cgagcaggct gagggcttcg
     2281 agctgccggg cgcagacctt tccggcgagg agctctccgt gcgggtcctg cctcggcagg
     2341 ccgacgagtt cacctgctcc aggtgcttcc tcgttcacca ccggagccag ctggccaagg
     2401 aggtcaacgg acagatggtg tgccgggagt gcgcggcctg agggccatga gcacctgcac
     2461 caccagcacg agcgcggaga tagggtcagt ccacgtgact ggcccttctc gcgttgctgt
     2521 gccgattcgc cgcctcgacg gcgacctacc ggtcccctcc tacgcccacc ccggcgatgc
     2581 gggggcggac ctgtatgcgg ccacggaggt gacactggaa ccaggggaac gggcgctggt
     2641 gccgacgggc gtggccctgg ccctgccagc cggcttcgtc gggctggtcc acccgcggtc
     2701 ggggctggcc gcgaagcacg gaatcaccat cgtcaacgcc ccgggcacgg tcgacgccgg
     2761 ctaccggggc gagattctcg tcaacctcgt caacctcgat ccgcgcgagc ccttcacagt
     2821 ccaccgcggg gaccggatcg gtcagctcgt ggtccagcag gtcgccatcg tggagttcgt
     2881 cgaggtggat tcgctcgacg acacctctcg gggggacact ggtcatggcg ccagcggtgg
     2941 attcggcgag cgcatccaga cagcgaagga ctaacccagc agtgagcatc ttccggcgaa
     3001 gcaaggccac gaacgacgag caggtcgagc cgaccggcac ggaggtcgac gccccagctg
     3061 gcaacgactc cgctggcgac gactcagtcg cgggcgactc cgtggcgaac ggcggtccgt
     3121 tcgactcctc ggaggtcgac ctgcgcggcg acgaacgtct cgacctgggt gcgttgcgca
     3181 tcagaggagt ggcagggatg gagctgcgcc tcgaggtcga ggaggagacg cagcaggtcg
     3241 tcggcgcgac cgcggtcatc ggtgactcgg ccgtgcagct ccaggcgttc gccgctcccc
     3301 gtagcgctgg catctgggag agcatccgcg aggagatcgc cgagtccatc gtcggccaag
     3361 gaggcaccgc ggacgaggag gctggcgagc tcggccacga gctgcgcacc cggatgccgt
     3421 cggccggacc ggacggacgg accgtctttg ctcctgcgcg gttcgtcggt gtcgacggcc
     3481 cacggtggtt cctgcgtgcg gtcttctccg gtcgcgctgc catcgacgac gaggcggcag
     3541 cccccttgat ggccgtggtc cgcgacaccg tggtggtgcg cggcgatgcg gccatggcgc
     3601 cgcgcgagat gcttgtgctg cgactccccg aagaggcgac cgtcccctcg gacgacctcc
     3661 ccgacgccga gcccgggcct ggacacaccg acgacctgcg cccattcgaa cgcgggcctg
     3721 agatcaccga ggtcaggtag gaacgtcatg gctgtgcaca cgactggcga gacgcaccag
     3781 cgcaacccgt tggtccggtt gggagaacgg ctcaccaagt ccgtcaccca gctggaggcc
     3841 gacgagctca aagaagactc ggtccggctg ggctgcacgc cgatgaacca gctggccgac
     3901 cgccaactgg ccacggtctc cggcaccgtc cgcgccgtca ccctgcgacc gcgcgtcaac
     3961 gtccccgcgc tggttgtcga cctctacgac ggcagccgaa cgatcaacct ggtgtggctg
     4021 ggtcggcgca ccatcggcgg catcgagccg ggccgctacc ttcgcgcgac ggggcgggtg
     4081 acgtactgcc gcggcattcc gaccatcttc aacccggcat acgagatcgt cccgccccgt
     4141 ggccactgac ccggccaaag ccgatgacac cggctcggta ctgaccgagg tcgaggtccc
     4201 gaccgtcgag gcactcatcc gacatcgact ctcgacggtg ctcggtgggt ggcgtggctc
     4261 tctcgagacg accgtgccga cgctcgcctt cgtgctgagc tggagctggc gtcacgacgc
     4321 gacgacatcg ctcgtcgcgg ctggagcggt gacgctggcc ttggccctgg ttcggctggc
     4381 acaacgacaa agcgcgcact tcgtcctggg agcggccctc gccacgggag tcgccgcgtt
     4441 cttcgtcctg cgcagcggtc gagccgagga cgccttcctc cccagcttga tcaagagctc
     4501 cgcattcggc gtcggcgccc tgatctccgc ggctctgcgc tggcccgtcg tcgggttcat
     4561 ggtgtccgca ggcgacccct acctggccga ggacccgttc ggatggcggc gtgaccgcgg
     4621 tgtggtgcgg gtgtgccagc ggctgaccat ggtcttggtc gtcctgtatg ccgtccggtt
     4681 ggccgtgatg ctcccgctct atctcgcgag caaggtggcc tggctcagcg tggccagcgt
     4741 ggtgctgggc tggcctctct ggctggccgc cctgggtgtc atggctgcga tcctgctccg
     4801 aggtcgcacc ccgcagcagc ctcccggtcg gctgctgacc ggagagtggg cgtcaacgga
     4861 gtcggtgggc tcgaccgggt cggacccgtc aacggagtcg gtgggctcga cccggtcgga
     4921 cccgtcaacg gagtcggatc actccgcgcc gcgcggtacc cgctgacttg ggctgagcat
     4981 cgactcgagc tcgtcctcga actcaggcgt cgagatgaac agcagctcgt cgtgcggctc
     5041 gagggagtcg tcacggctgg gcgcgatggg gtggtcctcg cgaatgatcc cgaccaggac
     5101 cgtctcgccg gggaaggtca cgtcaccgac gcgcttgccg gcatacgggc tgtcggcggg
     5161 aagcgtgagc tcgaccatgg tcgccttgcc ctgctggaac tggaagatcc gcaccaggtc
     5221 gccgacgctg acggcctctt cgaccagtgc ggtcatcagg cgcggggtgg agaccgcgac
     5281 atcgacgccc caggcctcgt cgaacatcca ctcgttcttg gggttgttga cccgggcgac
     5341 ggtgcggggc accccgaact cggtcttcgc cagcagggac agcacgagat tgaccttgtc
     5401 gtcaccggtc gcggcgacga cgacgtcgca ctcggccagg ccggcctcgt gcagggccgt
     5461 gatctcgcag gcgtcggcga gcagccacga cgcctcggga acgcgcccgg cctggacgtc
     5521 gtcggcgtcc ttgtccacga gcagcaccga gtgcccgttg tgcagcagct cgcgggcgat
//
LOCUS       DASYFY010000621         2618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_256159, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000621 DASYFY010000000
VERSION     DASYFY010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256159"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VGN19_12655"
     CDS             complement(<1..769)
                     /locus_tag="VGN19_12655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEV7196785.1"
                     /translation="MDAFTQVPVPVNEPVLDYAPGSPERANLEVALAELGSSSIELPH
                     TIGGKRVTGTGKKIEVRQPHARRKVLGTMRNATVGDAEAAVAAAKAAAPGWRELSFDD
                     RAAILLKAAELLSGPWRAHLNAATMLGQSKTAYQAEIDAACELIDFWRINVHFARQIL
                     AEQPPLNAKGIWNRTDHRPLEGFVYAITPFNFTAIAGNLPTAPALMGNTVVWKPSPTQ
                     QFAAHLTMALLDEAGMPPGVINMVTGDGLNVSKVALTD"
     gene            826..1644
                     /locus_tag="VGN19_12660"
     CDS             826..1644
                     /locus_tag="VGN19_12660"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7196786.1"
                     /translation="MPHTDDSANLAYRWSGPTAPDASTIVLLHGLGDSGDCWPEAVRR
                     WSPERRVVGVDLLGHGLSPRFSSAQLAAADPMEEMYAAAEATVQRLAAPSGSVTLVAH
                     SMGAGIATALASRRPDLVRAAVLEEPAWRDPALRVQPDSVVAERIADCRRFAEDPEGA
                     LADGRRDNPGWPEAELAPWAHAKTQVDQAFLALGVASFTTPWEDLVRAIAVPTLVLVG
                     GRSDLLGEPILERATALRNPCVRIEVVAEAGHCIRRELPETYSGLVDPWLAAQS"
     gene            complement(1669..2103)
                     /locus_tag="VGN19_12665"
     CDS             complement(1669..2103)
                     /locus_tag="VGN19_12665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196787.1"
                     /translation="MSQTRIYLPLNAVGLKHLSAARAVSGSPVRAFAVTDRVERSLPA
                     GDQEEWEYAALTEAVEAATLILPTLEEKRVIAAADVDSTWVRGNGAGDSLAAVEVSHP
                     VPLARIVSFHVDETAGDDGMSDLLWFDATELDEVLRVLQPGT"
     gene            complement(2100..>2618)
                     /locus_tag="VGN19_12670"
     CDS             complement(2100..>2618)
                     /locus_tag="VGN19_12670"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEV7196788.1"
                     /translation="CVVALDFDTGERVAFGRPGAPEVPLASAVMASCAIPGWYQPMRI
                     GAHRYIDGGAWSSTNLDLMVGRDLDEVYVLAPQVSFVRDAPTHWRTRVERQWRNRVTL
                     RALRELHKVHEDGADVTMLGPGQEDLEAIGSNLMDVTRRPNVIETSLRTSAVALHDPA
                     PLPDRSDFEDVG"
BASE COUNT          360 a          917 c          940 g          401 t
ORIGIN      
        1 ggtcggtcaa cgcgaccttg gagacgttga gcccgtcccc cgtgaccatg ttgatcacgc
       61 cgggcggcat tccggcctcg tcgagcagcg ccatggtcag gtgcgcggcg aactgctgcg
      121 tgggactggg cttccagacc accgtgttgc ccatgagggc cggggccgtc gggaggttgc
      181 ccgcgatcgc ggtgaagttg aacggcgtga tcgcatagac gaaaccctcg agcgggcggt
      241 ggtcggtgcg gttccagatg cccttggcgt tcagtggtgg ctgctcggcg aggatctgcc
      301 gcgcgaagtg cacgttgatc cgccagaagt cgatcagctc gcaggccgcg tcgatctcgg
      361 cctggtaggc cgtcttggac tgccccaaca tggtggccgc gttgaggtgg gcgcgccagg
      421 ggccggacag cagctcggcc gccttgagca agatggccgc gcggtcgtcg aaggatagct
      481 cccgccagcc gggcgctgct gccttcgccg ccgcgaccgc cgcctcggca tcaccgacgg
      541 tggcgttgcg catcgtcccc agcaccttgc gacgcgcatg gggctggcgc acctcgatct
      601 tcttgccggt gccggtgacc cgcttgcccc cgatggtgtg gggcagctcg atgctcgagc
      661 tcccgagctc ggcgagcgcg acctcgaggt tggcgcgctc ggggctgccg ggcgcgtagt
      721 cgagcacggg ctcgttgacg gggacgggca cctgggtgaa ggcatccatg gcgtgcgggc
      781 tcctcaagga tcgcttggcg aaagtgccca cctatggtgt cacgtatgcc gcacaccgac
      841 gacagcgcca acctcgcgta ccgatggtcc ggtcccactg caccggatgc gtccacgatc
      901 gtgctcctgc acggcctcgg ggactccggt gactgttggc cggaggcggt ccgccgctgg
      961 tcgccggagc gccgcgtggt gggggtcgac ctcctgggcc acgggctctc ccctcggttc
     1021 tcgtcggctc agctggctgc cgccgacccc atggaggaga tgtatgccgc ggccgaggcc
     1081 accgtccagc gcctcgccgc gccgagtggc tcggtcaccc tggtcgccca ctcgatgggg
     1141 gcaggcatcg ccacggcgct ggccagccgt cggcccgacc tggtgcgagc cgccgtcctc
     1201 gaggagcccg cctggcgcga cccggccctg cgcgtgcaac ccgactccgt ggtcgccgag
     1261 cggatcgccg actgtcgccg gttcgcggag gacccggagg gcgccctggc cgacggcagg
     1321 cgcgacaacc cgggctggcc ggaggcggag ctcgcgccgt gggcgcacgc gaagacccag
     1381 gtggaccagg ccttcctcgc cctgggggtg gcctccttca ccacaccgtg ggaggacctg
     1441 gtccgtgcga tcgcggtgcc caccctggtc ctcgtcggtg gccgatcgga cctgctcggc
     1501 gagccgatcc tcgagcgagc cacggccctg cgaaacccgt gcgtgcgcat cgaggtcgtg
     1561 gcggaggccg ggcactgcat ccgccgcgag ctgcccgaga cctactccgg gctggtcgac
     1621 ccctggctgg cagcgcagtc gtgagtgggg gtgcggggcg gtgaccgctc acgtcccggg
     1681 ctgtagcacc cgcagcacct cgtccagctc tgtggcgtcg aaccagagca ggtcggacat
     1741 cccgtcgtcg ccagccgtct cgtcgacgtg gaacgacacg atgcgggcca gggggaccgg
     1801 gtgcgagacc tcgacggcgg cgaggctgtc cccggcgccg ttcccccgca cccacgtcga
     1861 gtcgacatcc gctgcggcga tgacgcgctt ctcctcgagc gtcggcagga tgagagtggc
     1921 ggcctcgacg gcttcggtca gcgcggcata ctcccactcc tcctggtcgc cggccggcag
     1981 ggaccgctcc actctgtcgg tcaccgcgaa agcacgcacc ggggaccccg acacggcacg
     2041 ggcggcagac aggtgcttga gcccaacggc gttgagcggc aagtagatcc gggtttggct
     2101 catcccacgt cctcgaagtc cgaccggtcc ggcaagggag ctgggtcatg cagggcgact
     2161 gccgacgtgc gcagcgaggt ctcgatgacg ttcggtcgac gggtcacgtc catcaggttc
     2221 gacccgatcg cctcgaggtc ctcctgaccc ggaccgagca tcgtcacatc agcgccgtcc
     2281 tcgtgcacct tgtgcagctc gcgcagcgca cgcagggtca cgcggttgcg ccactgacgc
     2341 tcgacacggg tgcgccagtg ggtgggtgcg tcccggacga agctgacctg gggcgccagg
     2401 acgtagacct cgtcgaggtc ccgtcccacc atgaggtcga ggttggtcga cgaccaggcc
     2461 ccgccgtcga tgtagcggtg ggccccgatt cgcatcggct ggtaccagcc ggggatggcg
     2521 caggacgcca tcacggctga cgccaagggc acctcaggtg cgcccggccg gccgaacgcc
     2581 acgcgctcgc ccgtgtcgaa gtcgagtgcc acgacaca
//
LOCUS       DASYFY010000622         4781 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_675609, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000622 DASYFY010000000
VERSION     DASYFY010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4781
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675609"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..2781
                     /gene="valS"
                     /locus_tag="VGN19_12675"
     CDS             145..2781
                     /gene="valS"
                     /locus_tag="VGN19_12675"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012802374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEV7196789.1"
                     /translation="MTDAPSTPRAATIPERPSIDGLEDRWSQVWQEHGTFTFDRAAAH
                     ERGRAAVFSIDTPPPTASGSLHMGHVFSYTHTDCMARYKRMAGFEVFYPIGWDDNGLP
                     TEKRVQNFYGVRGDAALPHDPEFSPRHRGDVKSLKAADQQPISRANFIELCDELTVED
                     EKAFESLFRRMGFSFDWDISYRTIDDHSRATAQQAFLRNLDRGEAYQSEAPGLWDVTF
                     QTAVAQAELEARDYPGAYHRVAFHPVGSAEGATPVFIETTRPELIPAVVALIAHPDDE
                     RYAALFGSTVRSPLFGVEIPVLAHPAAEPDKGAGIAMCCTFGDLTDVLWWRELQLPTR
                     SVITRSGRIQSEVPEWIDSGSGQRFFDQELAGKTTFSAREAVVGALRESGELDGEPQP
                     TQRKANFYERGEKPLEIVTSRQWYIRNGGRDADLNAELIERGRQVQFHPAFMRSRYEN
                     WVSGLNGDWLVSRQRFFGVPIPVWYPLDDAGDPVFDKPLVPTQDELPVDPASQAPAGY
                     EESQRGQAGGFVGDPDVMDTWATSSLTPQIAGRWRDDPELFADVFPMDLRPQGHDIIR
                     TWLFSTVVRAHLEFGAVPWQHAALSGWILDPDRKKMSKSKGNVVTPEDVVKEHCADAV
                     RYWAASGRLGADAAYDTGQMKVGRRLAIKILNASKFALGFGEVDGDLSEAVSNPLDQA
                     MLAALARVVGQATEGFEGWDHTRALEATETFFWTFCDDYLELVKDRAYGGQGEAEAAS
                     ARASLRLALDVLLRLFAPLLPYVTEEVWSWWHDGSVHRAPWPQIAELAAAQEGDTALL
                     AAVGEALAGVRKSKSEAKVGMRAEVAAVVLAGPAEWTERVRTAESDLRATGRITGEIT
                     YTDAETPEVRDAVLIPVEKPKA"
     gene            complement(2712..3410)
                     /locus_tag="VGN19_12680"
     CDS             complement(2712..3410)
                     /locus_tag="VGN19_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196790.1"
                     /translation="MSNGFRLTNGDIGPVQQSQVTCGSACLTVSRMLVNPAFARWIVR
                     GEGPRLDAPDGATEQERFAAYERVVMARTNRLYAGGRRLNVPWPRALGTPPWGARKEL
                     EFGAARRGTQYEQRIVRQLTGRGLRGAYARLVDVVAEGQPALLYLGNAVLPRHVALVL
                     PGDGDRVHVYDPSTGAVSVLDPGRFAARELRLAGWDVPWLTVQPNGLRTVQAFGFSTG
                     MSTASRTSGVSASV"
     gene            complement(3460..4104)
                     /locus_tag="VGN19_12685"
     CDS             complement(3460..4104)
                     /locus_tag="VGN19_12685"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03086 family metal-binding protein"
                     /protein_id="HEV7196791.1"
                     /translation="MPSRPDAGQAPRELPEPQRPIALELLERAIAYCSATLQLVTVAD
                     LRRTTPCAGWTLGDLLRHLDDSLTALDEAAEGGSVALSCGRRHVADGELVDGVCDRAR
                     GLLGHWMAPLAGDRVGGVGGVGGVALGQHEVPLEVLAAVGALELTVHGWDVGRALGRP
                     RPVPPALARDLWPVACAHIAAADRPGRFGAVHPVRLGAGPEELLLAQAGRSTTH"
     gene            complement(4113..>4781)
                     /locus_tag="VGN19_12690"
     CDS             complement(4113..>4781)
                     /locus_tag="VGN19_12690"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF006089.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HEV7196792.1"
                     /translation="APDPLVVGDASDPATIVAERDGIRLAFVAALQHLPARQRAVLIL
                     RDVLRWRAAEVAEALETTEAAVNSALQRAHAQLDRAQVTRDTVEPALDAVQQAMLGRY
                     VQAFWDKDIDAIVAMLTRDAVWEMPPYTGWYHGAQSIGRLIDTQCPGGVHDMPMLATS
                     ANGQPAFGLYLREPDGTFTAFQLQVLTLTDGKVSHVAAFFDPSLFARFGLPGTLPADH
                     SVPA"
BASE COUNT          738 a         1683 c         1692 g          668 t
ORIGIN      
        1 gatgacaggg gtgtacacgg gttccatgac ctcaccatag aggtcgctcc tgaacgtaga
       61 ccccgacggc gaccggcacc gaccaggcac ggacccgaac aaccggttgg tgagcatctc
      121 cgcagggatg ggaagattca cgccatgacc gatgccccct ccacgccgcg cgccgccacg
      181 atccccgaac ggccctcgat cgacgggctc gaggaccggt ggtcccaggt ctggcaggag
      241 cacggcacct tcacgttcga ccgggccgcg gcgcacgaac gtggccgtgc ggcggtgttc
      301 tcgatcgaca ctcccccgcc caccgcctcc ggctcgctgc acatggggca cgtgttctcc
      361 tacacgcaca ccgactgcat ggcgcggtac aagcggatgg ccgggttcga ggtcttctac
      421 ccgatcggct gggacgacaa cggcttgccg acggagaagc gggtccagaa cttctacggc
      481 gtgcgcggcg acgccgcact gccgcacgac ccggagttca gcccgcgaca ccgcggggac
      541 gtcaagagcc tcaaggccgc ggaccagcag ccgatctcac gtgccaactt catcgagctg
      601 tgcgacgagc tcaccgtcga ggacgagaag gccttcgagt cgctgttccg gcggatgggg
      661 ttctccttcg actgggacat cagctaccgc acgatcgacg accactcgcg ggccaccgcg
      721 cagcaggcgt tcctgcgcaa cctggatcgt ggtgaggcct accagtccga ggcgcccggc
      781 ctgtgggacg tgacgttcca gaccgcggtc gcccaggcgg agctcgaggc gcgcgactac
      841 ccgggcgcct atcaccgggt cgccttccac ccggtgggtt cggctgaagg ggcgacgcca
      901 gttttcatcg agaccacgcg acccgagctg atcccggccg tggtggcgct gatcgcccac
      961 cccgacgacg agcggtatgc cgcgctgttc ggcagcacgg tccgctcccc cctgttcggg
     1021 gtcgagatcc cggtgctggc gcatcccgcg gccgagccgg acaagggcgc cggcatcgcc
     1081 atgtgctgca ctttcggcga cctcaccgac gtgctgtggt ggcgtgagct gcagctgccg
     1141 acgcgctcgg tcatcacccg cagcggccgg atccagagcg aggtgcccga gtggatcgac
     1201 tccgggtctg gccagcggtt cttcgaccag gagctcgccg gcaagaccac gttcagcgcc
     1261 cgtgaggccg tggtgggtgc gctgcgcgag tccggtgagc tcgacggtga gccgcagccg
     1321 acccagcgca aggccaactt ctacgagcgc ggcgagaagc cgttggagat cgtcacctcg
     1381 cgtcagtggt acatccgcaa cgggggccgc gacgccgacc tcaacgccga gctgatcgag
     1441 cgggggcggc aggtgcagtt ccacccggcc ttcatgcggt ctcggtacga gaactgggtg
     1501 agcggcctga acggcgactg gctcgtctcc cgccagcggt tcttcggcgt gccgatcccg
     1561 gtctggtacc ccctggacga cgccggggac ccggtgttcg acaagccgct ggtgcccacc
     1621 caggacgagc tgccggtcga ccctgcgtcc caggctccgg cgggctacga ggagtcccag
     1681 cgtggccagg cgggaggctt cgtcggtgac cccgatgtca tggacacctg ggcgacctcg
     1741 tcgctcaccc cccagatcgc cggtcggtgg cgggacgacc cggagctctt cgcggacgtc
     1801 ttccccatgg acctgcgccc gcaggggcac gacatcatcc gcacctggct gttctccacc
     1861 gtcgtccgtg cgcacctgga gttcggtgcc gtgccctggc agcacgccgc actctcgggg
     1921 tggattctcg acccggaccg caagaagatg agcaagtcca agggcaacgt ggtcaccccg
     1981 gaggacgtcg tcaaggagca ctgcgccgac gccgtccggt actgggccgc cagcggacgc
     2041 ttgggcgccg acgcggccta cgacacgggg cagatgaagg tcggccgccg gctggcgatc
     2101 aagatcctca acgcctccaa gttcgcgctg ggcttcggtg aggtcgacgg ggacctctcc
     2161 gaggccgtca gcaaccctct cgaccaggcg atgctggccg cgttggcccg tgtcgtcggc
     2221 caggccaccg aggggttcga gggctgggac cacacccgcg ccctcgaggc caccgagacg
     2281 ttcttctgga cgttctgcga cgactacctc gagctggtga aggaccgcgc gtacggcggc
     2341 cagggcgagg cggaggccgc ctcggcccgc gcgtcgctgc ggttggcgtt ggacgtgctg
     2401 ctgcgactgt tcgctcccct gctgccgtac gtcaccgaag aggtgtggtc gtggtggcac
     2461 gacgggtcgg tccatcgcgc gccgtggccg cagatcgcgg agctcgcggc agcgcaggaa
     2521 ggcgacaccg ccctgctggc cgccgtgggt gaggccctcg cgggtgtgcg caagagcaag
     2581 tcggaggcca aggtcgggat gcgggccgag gtcgccgccg tcgtcctcgc cggacccgcg
     2641 gagtggaccg agcgggtgcg caccgccgag tccgacctgc gggcgaccgg gcgcatcacc
     2701 ggcgagatca cctacacgga cgcggagact ccggaggtcc gcgacgctgt gctcatcccg
     2761 gtggagaagc cgaaggcctg aaccgtccgc aggccgttcg gctgcacggt cagccacggg
     2821 acgtcccatc cggcgagccg tagctcccgg gcagcgaaac ggcccgggtc gagcacgctg
     2881 accgccccgg tggacgggtc gtagacgtgc acgcggtcgc catcccccgg cagcaccagc
     2941 gcgacgtgcc gaggcaggac cgcgttgccc agatatagca gggccggctg accctcggcc
     3001 acgacatcga cgagccgcgc gtaggcgccg cgcagccccc taccggtgag ctggcgcacg
     3061 atgcgctgct cgtactgcgt gccacggcga gccgcgccga actccagctc cttgcgggcc
     3121 ccccagggag gggtgcccaa ggcccgcggc cagggcacgt tgagccgccg gccgccggca
     3181 tacagcctgt tggtgcgtgc catgacgacc cgctcgtatg ccgcgaacct ctcctgttcg
     3241 gtggcgccgt ccggggcatc gaggcgtggg ccctcacccc gaacgatcca ccgggcgaag
     3301 gccgggttca cgagcatgcg ggacacggtc aggcacgccg agccacaggt gacctgactc
     3361 tgttggacgg gcccgatgtc accattggtc aggcggaacc cgttgctcat gccgccatcc
     3421 tgtccgctga cccgaccggc cgtccaccgg gagtggacgt cagtgggtgg tgctgcggcc
     3481 agcctgggcg aggagcagct cttcaggccc cgcaccgagc ctgaccgggt ggactgcacc
     3541 gaaccggccc ggtcggtcgg ccgccgcgat gtgcgcgcag gcgaccggcc acaggtcgcg
     3601 cgccaaggca ggcggaacgg ggcgcggtct gcccaatgcg cggccgacat cccagccgtg
     3661 cacggtgagc tcgagggcgc ccacggcggc caggacctcc agcggcacct cgtgctggcc
     3721 aagcgctacc ccgcctacgc cgccgacccc accgaccctg tcaccagcga gcggcgccat
     3781 ccagtgaccg agcaggcctc gggcccggtc gcagaccccg tcgacgagct cgccgtcagc
     3841 aacgtgacgc cggccgcatg acagggctac ggacccgccc tcggccgcct cgtccaaggc
     3901 cgtcagagag tcgtccagat gtcgcaacag gtcacccaag gtccaaccgg cgcacggggt
     3961 ggtccggcgg aggtcggcaa cggtgaccag ctggagcgtg gcgctgcagt acgcgatcgc
     4021 ccgttcgagc agctcgaggg caatggggcg ctgtggctcc ggcagctccc gcggcgcctg
     4081 cccagcgtca ggacgtgaag gcatgacaaa ccttatgcag gcacagagtg gtccgccggc
     4141 agggtgcccg ggagaccgaa cctcgcgaag agcgaagggt cgaagaaggc cgccacgtgg
     4201 ctgaccttgc cgtcggtcag cgtgagcacc tgaagctgga aggcggtgaa ggtgccatca
     4261 ggctcgcgca ggtacaggcc gaacgccggc tggccgttcg ccgaggtggc cagcatgggc
     4321 atgtcgtgca ccccgccagg gcactgcgtg tcgatgagcc ggccgatgct ctgcgctccg
     4381 tggtaccagc cggtgtaggg cggcatctcc cagacggcgt cacgcgtcag catggcgacg
     4441 atggcgtcga tgtccttgtc ccagaacgcc tggacgtacc gccccagcat cgcctgctgg
     4501 actgcgtcca gggcgggttc cacggtgtcg cgggtgacct gggcccggtc gagctgggca
     4561 tgcgcgcgct ggagggcgct gttgacggcg gcttcggtgg tctcgagggc ttcagccacc
     4621 tcggccgcac gccacctcag cacgtcacgc aggatgagca cggcgcgttg tcgcgccggc
     4681 aggtgctgca gggcagcgac gaacgccagc cggatgccgt cgcgctcggc cacgatggtg
     4741 gcggggtcgc tggcgtcacc gaccacgagc gggtcggggg c
//
LOCUS       DASYFY010000623         1616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_832795, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000623 DASYFY010000000
VERSION     DASYFY010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_832795"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..129
                     /locus_tag="VGN19_12695"
     tRNA            53..129
                     /locus_tag="VGN19_12695"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:87..89,aa:Ile,seq:cat)
     gene            complement(369..>1616)
                     /locus_tag="VGN19_12700"
     CDS             complement(369..>1616)
                     /locus_tag="VGN19_12700"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2156 domain-containing protein"
                     /protein_id="HEV7196793.1"
                     /translation="AVIALQIASFAHMVVVGEQGLVAASYDLVLNTVGLALLWAGRHA
                     FRNPSPRRARRTIGSLVAPADEDQRAMATELLRHEGTVNRLAWMTTWPENRWFSSRNR
                     PGYVAYRVHAGVAVGLCDPVAAREEDRSALLAEFADQVHAQGMVPCLFTVSAEAARHA
                     RSRGWHALQVAEEAVIELADLDFVGKAWQDVRTGLNQASKRNIRFSLGPLGAMPRGLQ
                     MQVKAISSEWVEDMGLPEMGFTLGGVDEALDPAVRVGLAVDADATVHGVTSWMPIHDV
                     GGGEPVGWTLDVMRRLPGGFRYSMEFLIASACLTFRDEGCTAVSLSGAPLARSRQSDG
                     EDLDRGTLDLFLDRLGATLEPYYGFRSLHAFKSKFQPVHDPLYLVFPDEAALPRIGLA
                     LSRAYLPEAGLRDLMALTRPTHA"
BASE COUNT          254 a          557 c          584 g          221 t
ORIGIN      
        1 gctcgctaga cttcgatcga cctcgacggc ccgcacgggt cgcgacggtc ccggggcagt
       61 agctcagccg gtcagagcag cggactcata atccgtcggt ccagggttca agcccctgct
      121 gccccaccac acgtttgcgc aggtcaacca gcatctgtgg catctggccg cccctcttcg
      181 agctgcgatc ggggccgcgc cagccggcat ggcgccgaag caggtagacg acgaaggtgg
      241 cccaccaggc gaactccgtt gccttgaccc cgtcccggag cgtcgtgggc cctccgggcg
      301 cgctcggcgg cacaccaggc tcctgagccc cttggcggca gacgaggccc cggtcccgga
      361 acacccggtc acgcgtgggt cggccgcgtg agggccatca ggtcgcgcag cccggcctcc
      421 gggaggtagg cccggctcag cgcgaggccg atccttggga gagcggcctc gtcggggaag
      481 acgaggtaga gcggatcgtg caccggctgg aacttcgact tgaacgcgtg cagcgaccgg
      541 aagccgtagt acggctccag cgtggcgccg agccggtcga ggaagaggtc gagcgttccg
      601 cggtcgaggt cctcgccgtc ggactggcgg ctccgcgcca agggagcgcc cgagagcgag
      661 acggccgtgc agccctcatc gcggaaggtg aggcaggcgg aggcgatgag gaactccatc
      721 gagtagcgaa agcccccggg cagccggcgc atcacatcga gggtccagcc gaccggctcg
      781 ccgccgccca cgtcgtggat cggcatccac gacgtcacgc cgtgaaccgt ggcgtcggcg
      841 tcgacggcga gaccgacccg cacggcaggg tcgagggcct catcgacccc gcccagcgtg
      901 aaacccatct ccggcaggcc catgtcctcg acccattcgg acgagatggc cttgacctgc
      961 atctgcaacc cgcgtggcat ggcccccagc ggcccgaggg agaaccggat gttgcgcttg
     1021 gaggcctggt tgaggcccgt gcgcacgtcc tgccaggcct tgccgacgaa gtcgaggtca
     1081 gccagctcga tgacagcttc ctctgccacc tggagggcat gccatccccg ggaccgtgcg
     1141 tggcgagcgg cctccgcgct cacggtgaac aggcagggaa ccatgccttg ggcgtgcacc
     1201 tggtcggcga actcggcgag cagtgccgac cggtcctcct cgcgggccgc caccgggtcg
     1261 cacaggccga ccgcgacgcc tgcgtgcacc cgataggcga cgtagccggg gcggttcctg
     1321 ctggagaacc agcggttctc tggccaggtc gtcatccagg cgagtcggtt gaccgtgccc
     1381 tcgtggcgta gcagttcggt cgccatggcc cgctggtcct cgtcggccgg ggcgacgagg
     1441 ctaccgatgg tgcgtcgcgc ccgtcggggc gaggggttgc ggaaggcgtg gcggccggcc
     1501 cagagcagcg ccagaccaac ggtgttgagg acgaggtcgt aggaggcggc cacgagcccc
     1561 tgctcgccga cgacgaccat gtgcgcgaag ctggcgatct ggagcgcgat gacggc
//
LOCUS       DASYFY010000624         2334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_518314, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000624 DASYFY010000000
VERSION     DASYFY010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518314"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..669)
                     /locus_tag="VGN19_12705"
     CDS             complement(<1..669)
                     /locus_tag="VGN19_12705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196794.1"
                     /translation="MARLLLLTNSLAPSAEVLPALGLLSHQVRIIPAEPTALVDAPAC
                     DAVLLDARRDLAVARSLCRVLRISGMSVPLIAILTEGGLAGLTAEWGVDEALLESAGP
                     AEVEARLRLAAGRLQGEAEPAEVQITSGEVTIDEATYSARVRGRLLDLTYKEFELLKY
                     LAQHPGRVFSRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGSEHEVLIGTVRNVGYR
                     FVPAE"
     gene            747..1034
                     /locus_tag="VGN19_12710"
     CDS             747..1034
                     /locus_tag="VGN19_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEV7196795.1"
                     /translation="MVLARGGGMPGGEQASVGVTVRYWAGARAAAGVDEDAFDHCPTV
                     ESVTAAVVALHPGLEPIVRVSTLLLDGHAVTSQTSLSPGALLEVLPPFAGG"
     gene            1051..1896
                     /locus_tag="VGN19_12715"
     CDS             1051..1896
                     /locus_tag="VGN19_12715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196796.1"
                     /translation="MSELPDQAAAAAAPLTRRELREAASRRRFPRRVRPPGRLTILTT
                     VAFAGLVALTGFAGPSLVAVAIALGGFVVAWGWPILLNLPSPRGTTGVLAAGTVLMAA
                     AVIVTPNDPFLRWVPAALAVSVVIAFLHQLLRRDGRPRLTESVAATTSGLAIISSGVA
                     LAPLPQVLNGAPTLAAAMAGLGVGALADPLIGTRRGRQWALFIAMVIGGSAAVGVALV
                     AGHPRTATAALLGLMAAGVSHASRRIMAVLPSAGSSRAQLALASSSAMLVGVVAYVLV
                     RRFVA"
     gene            complement(1955..2326)
                     /locus_tag="VGN19_12720"
     CDS             complement(1955..2326)
                     /locus_tag="VGN19_12720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HEV7196797.1"
                     /translation="MSEPRTRLVVKVTCGVEAPERLNQALTVAATAVAGGVLVSLWLT
                     GEATWVAVPGRAEEFDLPYAAPLADLRDAVLAEGVLTVCGQCAARRDLTAVDLVPGAQ
                     IRGAAAFVEEVMAEGARSLVY"
BASE COUNT          320 a          826 c          830 g          358 t
ORIGIN      
        1 ctcggcaggc acgaagcggt agccgacgtt gcgcacggtc ccgatcagca cctcgtgctc
       61 ggagcccagc ttggcgcgca ggcgccgcac gtggacgtcg acggtccggg tgcccccgta
      121 gtagtcgtac ccccaaacct cctggagcag ctgggcgcgg ctgaagaccc gccccggatg
      181 ctgagcgagg tacttcaaca gctcgaactc cttgtacgtg aggtcgagga ggcgtccccg
      241 gacccgcgcc gagtaggtgg cctcgtcgat ggtgacctca cctgaggtga tctggacctc
      301 cgcgggctcg gcttcgccct gcagacgccc cgcggcgagg cgtagtcggg cctcgacctc
      361 ggcgggaccg gccgactcga gcagcgcctc gtcgacgccc cactcggcgg tgagtccggc
      421 gagaccgccc tcggtcagga tcgcgatcag cggcaccgac atccccgaga tccgcaggac
      481 gcggcacagt gagcgagcca cggcgaggtc gcggcgggcg tcgagcagca cggcatcaca
      541 cgccggggca tcgaccagcg cggtgggctc ggcagggatg atccgtacct ggtggctcag
      601 caggcccaac gccggcaaca cctcggcgct cggcgccaga gagttggtga gcagcagcag
      661 acgggccatg cccataaagg atacggtgcc gggggtcgac acgcggggac ggacgcatga
      721 tgagaccgtt gtctcacgat gtgttggtgg tgttagccag aggaggcggt atgccgggcg
      781 gtgagcaggc ctcggtcggg gtgaccgtgc gctactgggc cggggcccgg gcggcggcgg
      841 gagtcgacga ggacgccttc gaccactgcc cgacggtcga atccgtgacc gccgccgtcg
      901 tcgccctgca ccccgggctc gaaccaatcg tccgcgtcag cacactgttg ctcgatggac
      961 atgcggtgac gtcacagacg tcgctgtcac ctggggccct cctggaggtg ctgcctccct
     1021 ttgccggtgg gtgatgggag gatgccgcct gtgtcggaac taccggacca ggcggccgcc
     1081 gccgctgcac cgctcacgcg acgtgagctt cgggaggcgg cctctcggcg acggttcccg
     1141 cgtcgcgtcc gtccgccggg acgcctcacg atcctgacga cggtcgcctt tgccggcctc
     1201 gtcgcgctca ccggcttcgc cggaccctcc ctggtggccg ttgccatcgc cctcggcggc
     1261 ttcgtcgtgg cctggggctg gccgatcctg ctgaacctgc cgagcccgcg cggcacgacc
     1321 ggcgtgctgg ctgcaggcac ggtgctcatg gcagcagcgg tcatcgtcac tccgaacgac
     1381 cccttcctgc ggtgggtgcc cgcagccttg gcggtgtccg tcgtcatcgc cttcctgcac
     1441 cagctgctgc gacgcgatgg gcgaccgagg ctgaccgagt ccgtggccgc gaccaccagc
     1501 ggtctggcca tcatctcctc gggcgtcgcg ctcgcgccgc tgccccaggt gctcaacggt
     1561 gctccgaccc tcgccgccgc catggccggc ctgggtgtgg gtgcgctcgc cgaccccctg
     1621 atcggcacgc gaaggggacg gcagtgggcg ctgttcatcg cgatggtcat cgggggttcg
     1681 gccgcagtgg gggtcgcgct ggtggccggc cacccacgaa ccgcgacagc tgccctgctg
     1741 gggctgatgg cagcgggggt ctcgcatgcc tcgcgacgga tcatggcggt gctgccttca
     1801 gcgggttcca gccgggcgca gctggcactg gcgtcgtcgt cggcgatgct ggtgggagtt
     1861 gtcgcctacg tgctggttcg tcgcttcgtg gcctgaggta ctgacggcca gagttgttct
     1921 gacggcccga ggactgaggg caggtccgcg ccggtcagta caccagggat cgggcgccct
     1981 cggccatcac ctcttcgacg aaggccgccg ctccccggat ctgggcaccc ggcaccagat
     2041 ccaccgccgt gaggtcgcgt cgcgccgcgc actgaccgca caccgtcagc accccctccg
     2101 cgagcacggc gtcccgcagg tctgccagcg gcgcggcata cggcaggtcg aactcctccg
     2161 cccgacccgg cacggccacc caggtcgcct cgccggtgag ccacaggctg accaggacac
     2221 caccggccac cgccgtggcg gccacggtga gggcctggtt cagccgctcg ggtgcctcga
     2281 caccgcaggt gactttcacg acgagtcgag tgcggggttc agacatggtc acag
//
LOCUS       DASYFY010000625         4170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_518423, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000625 DASYFY010000000
VERSION     DASYFY010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518423"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VGN19_12725"
     CDS             complement(<1..598)
                     /locus_tag="VGN19_12725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196798.1"
                     /translation="MFDLTKGARRLPLLGIAAVPASSLAVASPTSAVPTAATAPHSAG
                     MKTPAVGVHPHFVSAGAPENTPQGVVFGCQTTVPAGCYGPEQIRAAYGLDELAAKGLN
                     GAGKTIVIIDAYSSPSLEADLARFDNLFGLPAADLQQVASDGVPPFDASQIGWQGEIT
                     LDVEWAHAIAPAAKIKLVQARSSMDADILSATRYAITQN"
     gene            1063..2217
                     /locus_tag="VGN19_12730"
     CDS             1063..2217
                     /locus_tag="VGN19_12730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196799.1"
                     /translation="MIKRVVAVLVLVLAVVVGASYGQALLAPGDAPWTVRTVEWVRDN
                     GGGGMVDAVENWWFTRNPPPNVAPDPSALPDLSPPRAAKPTVGSTGTRSASSASGTSS
                     ASTASTARPPTVTIPSGLTPVAREGAWVPGRLDRRGLPAMFTTFVQPDPSHASVVAAV
                     AWIRSSDTVGHLVAGTTQPGGDGWPGGAHVTPGDVSSLVATFNSGWRFKDLLGGFYEN
                     GRYSHPLQQGAGSVVIDRSGQVTVGQWGRDVAMSPDVVAVRQNLHLIVDAGAPAPGIA
                     DASGPWGVSKNQRQFTWRSGLGVDRQGNLVYVAGDGMTLKMLTAALVSAKAVRAVELD
                     MHSNMVFFARWLPDGANGSVAPAKLLPTMPSGADRYLTPDQRDFFYVTLR"
     gene            2217..3104
                     /locus_tag="VGN19_12735"
     CDS             2217..3104
                     /locus_tag="VGN19_12735"
                     /EC_number="2.4.2.45"
                     /inference="COORDINATES: protein motif:HMM:NF008978.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decaprenyl-phosphate phosphoribosyltransferase"
                     /protein_id="HEV7196800.1"
                     /translation="MATVSSTRGPSLVLSLVELSRPRQWLRNVLVAAVPIAAGTILHP
                     AVLLATAQAFLAFSLAASATYCFNDVLDAEADSRHPTKRNRPVASGRVSRLQAAMAAM
                     ALAVAAVAVSGPGSLRWVVMGYLALSTAYTTSLKHQPVLELALVSGGFLLRAIAGGAA
                     TGTPVSRWFLIVTGFASLFVVIGKRLSELVSVGSEDRTRRTLSAYTPSYLRMMLCICG
                     AVAVTAYCLWAFGLGTAPGQGVYAGVSVVPLVLAMMRYALDVDLGRAQEPEQVVLHDH
                     VLQALGVIWFACFWLAAVS"
     gene            3101..>4170
                     /locus_tag="VGN19_12740"
     CDS             3101..>4170
                     /locus_tag="VGN19_12740"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEV7196801.1"
                     /translation="MSAARGTDPNSVVAAAGGHSASSSLEELTGWGRTAPTVARVAAP
                     ADAADAARLIAEGGPRGVIVRGLGRSYGDAAQNAGGLVLRLGALDQISPVDPVTGLVT
                     CGAGVSLDQLIREVLPRGWFVPVTPGTRQVSLGGALAADVHGKNHHRDGSISAHVASL
                     TLLDGRGALRTLTPSDDLFWAVPGGMGLAGVVVEVTLRLIRVESGGMVVDTTRTTSLD
                     ETMAILEESDRTNRYTVAWVDCLARGSAVGRGVVTSGDHATAEGAGKAAPLVPGSRAL
                     PAPRWAPAGALNPVSVGLFNEAYYRMAPRTTRRSLESVGSFFHPLDVVEGWNRIYGTR
                     GFVQYQFAVEDPECVRQVVSTLS"
BASE COUNT          561 a         1404 c         1522 g          683 t
ORIGIN      
        1 cgttctgcgt gatcgcgtac ctcgtcgcgg acaggatgtc ggcgtccatc gaggaccggg
       61 cctgaaccag cttgatcttc gcggcggggg cgatcgcgtg cgcccattcg acgtcgaggg
      121 tgatctcgcc ctgccagccg atctgcgacg cgtcgaacgg gggcacgccg tcggatgcga
      181 cctgctgcag gtccgcggcc ggaagcccga acaggttgtc gaaccgggcc aggtccgctt
      241 ccagggacgg actcgagtac gcgtcgatga tcacgatcgt cttgccggcc ccgttgaggc
      301 cctttgcggc gagctcgtcg aggccgtacg cggcacggat ctgctcgggt ccgtagcagc
      361 cggccgggac ggttgtctgg cacccgaaga cgaccccctg cggggtgttc tccggggcgc
      421 ccgcgctgac gaagtgcggg tgtacgccga ctgctggcgt cttcataccc gccgagtggg
      481 gcgcggtggc ggccgtcggt acggcactgg tgggcgacgc gaccgcgagg gacgacgcgg
      541 ggacagcggc gatgcccagc agcggcagcc gccgggcacc cttggtgaga tcgaacatcc
      601 ggttacccct actcatccgg gagggcccac cctgcgggga gggtcctgcg ccggcccact
      661 ctggccacgc tccccgggag cgtgacgcga tatgtgacgc gaacaacggc gaacagcgca
      721 gaccgttcga atcgcccacc ggaggccgaa caggacggct gagccgcgtg gacgatgacc
      781 ctcggcctgt ctcggcccag gacccccacc cggctcaccc cgccgtagcg gagcgcgccg
      841 gctcatgatg ctggtgccgc atgctggtgg cgcgtctgat ccttcgaggt cgtcagttgg
      901 agcgctggcg ctcggctcac caaccgggca ggctcagcgt ccttccagca tctgcaggga
      961 cgatccttga ggtttatcct gagtcggatt gaggtccaga tgcgtgagtt gctgggtggg
     1021 ggcgccaggc gtcgaggcgc ccgggtgagt catcggcggc gcgtgatcaa gcgcgtggtg
     1081 gcggtactcg tgctcgtact cgcggtcgtc gtgggcgcct cttacggcca ggcgttgctg
     1141 gcgccgggtg atgctccgtg gacggtgcgc acggtcgagt gggtgcggga caacggtggg
     1201 ggcggcatgg tcgatgcggt ggagaactgg tggttcaccc gcaatccccc gcccaacgtg
     1261 gccccggacc cgtcagcgct gcccgacctt tcgcctcccc gggccgccaa gccgacagtc
     1321 ggcagtacgg gcacacgcag cgccagcagc gccagcggca ccagcagcgc cagcaccgcc
     1381 agcaccgcca ggccgccgac cgtcacgatc ccgagcggcc tcaccccagt ggcccgggag
     1441 ggcgcctggg tgccgggacg tctcgaccgc agagggcttc cagcgatgtt cacgaccttc
     1501 gtgcagccgg acccgagcca tgcgagtgtc gtcgcagcgg tggcgtggat ccgttcgtcg
     1561 gacacggtcg gtcacctcgt cgcgggtact acgcagcccg ggggcgacgg gtggccgggt
     1621 ggggcgcacg tcacgccggg cgacgtgtcc tcgctggtgg ccaccttcaa ctccgggtgg
     1681 cgtttcaagg acctgctcgg gggcttctac gagaacggcc gctactccca cccgctgcag
     1741 cagggggcgg gctcggtggt catcgaccgg tccgggcagg tgaccgtcgg ccagtggggc
     1801 cgggacgtgg cgatgtcacc ggatgtcgtg gcggtgcgcc agaaccttca cctgatcgtc
     1861 gacgccggtg cgcccgcgcc ggggatcgcc gatgcgagcg ggccgtgggg tgtgtcgaag
     1921 aaccagcgtc agttcacgtg gcgttctggt ctcggggtcg atcggcaggg caacctcgtc
     1981 tatgtggcgg gcgacggaat gactctgaag atgttgacgg cagcgctggt ctctgccaag
     2041 gcggtgcgtg ctgttgagct ggacatgcac tcgaacatgg tgttcttcgc acgctggctc
     2101 cccgacgggg ccaacgggtc ggtggcgcca gccaagctgc tgccgaccat gccgtccggc
     2161 gccgaccgct acctcacacc cgaccagcgc gacttcttct acgtcaccct ccgctgatgg
     2221 cgacggtgag ctcgacgcgc ggcccgtcgc tcgtcctcag cctggttgag ctgtctcggc
     2281 cgaggcagtg gttgaggaac gtgctggtcg ccgccgtgcc catagcggcg ggtacgatcc
     2341 tgcaccccgc agtgctgttg gcaacggcgc aggcgtttct ggccttcagc ctggctgcga
     2401 gcgcgacgta ctgtttcaac gacgtgctcg acgcagaagc cgactcgcgg cacccgacca
     2461 aacgcaaccg cccggtcgcc tctggacgtg tgagccgcct acaggcggcg atggccgcga
     2521 tggctctggc cgtggccgcc gtcgcggtca gcgggcccgg ctctctacgg tgggtggtga
     2581 tgggttacct cgccctgtcc accgcctaca caacctcact caagcaccag ccggtgctgg
     2641 agctggcgct ggtctccggc gggttcttgc tgcgcgcgat cgctggagga gccgccacgg
     2701 gaacgccggt cagccggtgg tttctcatcg tcaccggctt cgcgtcgctc ttcgtcgtca
     2761 tcggcaagcg actgtcagag ctggtcagtg tgggctcgga ggaccggacg aggaggacgt
     2821 tgagcgccta caccccgagc tacctgcgga tgatgctctg catctgcggg gccgtcgccg
     2881 tgacggcata ctgcctgtgg gctttcggtc tcggtacggc gcctggccaa ggcgtctacg
     2941 ccggcgtatc ggtcgtgccg ctcgtcctcg cgatgatgcg atacgccttg gatgtggacc
     3001 tgggcagggc gcaggagccc gagcaggtcg tgctgcacga ccacgtgctg caggccctcg
     3061 gggtcatctg gttcgcgtgc ttctggctgg cggccgtgtc atgagcgccg cacgcggaac
     3121 cgatccgaac agcgtggtgg cggccgcagg cgggcactct gcttccagct cgctggagga
     3181 gctgaccggc tggggccgca ccgcgcccac cgtggcgcgc gtggcggcgc ccgcggacgc
     3241 cgccgacgcg gctcggctca tcgccgaggg cggaccgcgg ggtgtcattg tccgggggtt
     3301 gggtcgcagc tacggggacg cggcccagaa cgcaggcggc ctcgtgctgc gtctgggcgc
     3361 cctcgaccag atctccccgg tggatccggt cactggactc gtcacgtgcg gtgccggggt
     3421 cagcctcgac cagctcatcc gcgaggtgct cccgcgcgga tggttcgtcc cggtcacgcc
     3481 aggcacccga caggtcagcc tcggtggcgc cctcgcggcg gacgtgcacg gcaagaacca
     3541 ccatcgggac ggcagcatct cggcccacgt cgcctccctc accctcctcg acgggcgcgg
     3601 tgccctgcgc acgctcacac cgtccgacga cctcttctgg gccgtgccgg gggggatggg
     3661 gctcgcgggc gtggtcgttg aggtgacgct gcggctcatt cgggtcgagt cgggggggat
     3721 ggtggtcgac acgacccgga ccacgtcgct cgacgagacg atggccatcc tggaggagtc
     3781 ggaccgcacg aaccggtaca cggtggcgtg ggtcgactgc ttggcgcgtg gctcggccgt
     3841 ggggcgtgga gtcgtcacct cgggtgacca cgccaccgcc gagggggccg gcaaggccgc
     3901 tcccctggtc cccggaagcc gcgccctgcc ggcgccgcgg tgggcccccg cgggtgcgct
     3961 caaccctgtc agcgtcggcc tgttcaatga ggcgtattac cgcatggccc cgaggacgac
     4021 gcgtcgcagc ctcgagagcg tcgggtcctt cttccatccg ctggacgttg tcgagggctg
     4081 gaaccgcatc tacggcacgc gggggttcgt gcagtaccag ttcgcggtcg aggacccgga
     4141 gtgcgtgcgg caggtcgtca gtacgctgtc
//
LOCUS       DASYFY010000626         1974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_991935, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000626 DASYFY010000000
VERSION     DASYFY010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_991935"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VGN19_12745"
     CDS             complement(<1..349)
                     /locus_tag="VGN19_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEV7196802.1"
                     /translation="MTTLSHAVGETDVPLLEQTIPDNLDATVAAFPEREALVDVQRGI
                     RWTYAEFAAEVDRLARALLAMGVAKGERVGVWAPNCAEWVVVQYATAKVGTILVNINP
                     SYRTHELEYVLKQA"
     gene            complement(419..1246)
                     /locus_tag="VGN19_12750"
     CDS             complement(419..1246)
                     /locus_tag="VGN19_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019483586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7196803.1"
                     /translation="MTTLAGKTILMSGGSRGIGLAIAIRAARDGANVALIAKTDKADP
                     RLVGTIHTAAAAIEEAGGTALAIVGDVRDDETIASAVAKTAAEFGGIDIVVNNASVLN
                     LSPTATLDPKRYDLMQDVNVRGTFMLTRAALPHLLASPDPKVLTLSPPINLDPRWFAG
                     HPAYTMAKYGMTMAALGFAHELGQKGVSSTCLWPATLVATDAIGNLPGGDQMVKVSRK
                     PEIVADAAYEVLTTDGQTLNGQTIIDEDLLRARGVADFAQYSMTGKDDGLATDLFLS"
     gene            complement(1337..1786)
                     /locus_tag="VGN19_12755"
     CDS             complement(1337..1786)
                     /locus_tag="VGN19_12755"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEV7196804.1"
                     /translation="MSPTSLLGELDVELTRMLWWARSAQKRTAIDAHPDLDNAGYAVL
                     VAIRELSAAGGGVRGAELADALGLHKSTISRNLSTLEDLGLVERILDPTDARARQVRL
                     TGGGIAALDRTFEGRLERLRSQLSAWDAADIGELATLLRRFNDTPLP"
BASE COUNT          311 a          661 c          673 g          329 t
ORIGIN      
        1 ctgcctgctt gaggacgtac tcgagctcgt gggtccggta gctggggttg atgttgacca
       61 ggatcgtccc cacctttgcc gtggcgtact gcacgacgac ccactcggcg cagttcgggg
      121 cccagacccc gacccgctca cccttggcca cccccatggc gagtagggcc cgggcgagcc
      181 tgtccacctc ggccgcgaac tcggcatacg tccagcggat gccgcgctgc acgtccacga
      241 gagcttcgcg ctccgggaag gcagccactg tggcgtcgag gttgtccggg atggtctgct
      301 cgagcagcgg gacgtcggtc tcgccgacgg cgtgcgacag cgttgtcatg ggacccatcc
      361 caccgtgcgc atggcccacc cacaagatca gttcaacaaa tgggtcggct cacgaagctc
      421 agctcaggaa gaggtccgtc gccagcccgt cgtccttgcc cgtcatggag tactgggcga
      481 agtcggccac tccccgcgcc cggagcagat cctcgtcgat gatggtctgg ccgttgagtg
      541 tctggccgtc ggtggtgagc acctcgtatg ccgcgtccgc cacgatctcg ggcttgcggc
      601 tcaccttcac catctggtcg ccgccgggca ggttgccgat cgcatcggtg gcgaccagcg
      661 tggcgggcca cagacacgtg gacgaaacgc ccttctggcc gagctcgtgg gcgaacccga
      721 gcgccgccat cgtcatgccg tacttcgcca tcgtgtatgc cgggtgcccc gcgaaccagc
      781 gcggatccag gttgattggc gggctcagcg taagcacctt ggggtctggg gaggcgagca
      841 gatggggcag ggcggcccgg gtgagcatga aggtgccgcg cacgttgacg tcctgcatca
      901 ggtcgtagcg cttcgggtcc aaggttgccg tcgggctgag gttcagcacg ctggcgttgt
      961 tgacgacgat gtcgatccca ccgaactcag ccgccgtctt ggcaaccgcc gaggcgatgg
     1021 tctcgtcgtc acggacgtca ccgacgatgg ctagcgcagt gccgccggcc tcctcgatcg
     1081 cagccgcagc cgtgtggatc gtgccgacca gtcgcgggtc ggccttgtca gtcttcgcga
     1141 tgagggcgac gttggcaccg tcgcgggctg cgcggatggc gatcgccaga ccgatacccc
     1201 tgctcccacc ggacatgagg atggtcttac ctgcgagcgt cgtcatgcca ggagcctagt
     1261 taccgagcgg taggcgcgaa accgtcacga cgcgtgagcc tcgccacccc gcagctgccg
     1321 cgctcgagtc ccagggtcaa gggaggggcg tgtcgttgaa ccgacgcagc agcgtggcca
     1381 gctctccgat gtcggcggcg tcccaagcac tcaactgcga gcgcagccgc tccaggcgac
     1441 cctcgaaggt ccggtcgagc gcggcgattc ccccgccagt cagtcgcacc tgacgagccc
     1501 gagcgtccgt ggggtccagg attcgctcga ccaggccgag gtcctcgagc gtcgacaggt
     1561 tccggctgat cgtcgacttg tgcagcccta gggcgtccgc cagctcagcg ccacggactc
     1621 cgccaccagc cgccgacagc tcgcgtatgg ccacgagtac ggcgtacccg gcgttgtcga
     1681 ggtcggggtg cgcgtcgatc gcggtgcgct tctgggcgct ccgggcccac cacagcattc
     1741 tggtgagctc gacgtcgagc tcgcccagca gggaagtagg tgacatgaag ggagactatg
     1801 tgcggctggc acctgtcgaa agcgctcggt tcgcaggttg gacaacgcgg ggtggcgcgg
     1861 cccacgcggc gtacgcggac tgagagactg acgcagtgcg ccaggtgacc cagtcgtcaa
     1921 agctccagaa cgtccgctac gacgtgcgcg gaccgatcct cgaggaggcc catc
//
LOCUS       DASYFY010000627         4611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_938586, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000627 DASYFY010000000
VERSION     DASYFY010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4611
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938586"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2527)
                     /locus_tag="VGN19_12760"
     CDS             complement(<1..2527)
                     /locus_tag="VGN19_12760"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEV7196805.1"
                     /translation="MRLVRRRSVVSAAVAVGMLVPTASMAMAVGAHAAAGGASGTQGG
                     ASAATGRVAGGGTSTPTARDQLLHRVAVNHDSGKVVLSVKVRGGRGAAASLTAIARAV
                     ASQGGLQRRLLQQVGTVSVEVPQAAAAGVAAELRRRADVARVDPVVLKKLSYVPNDQL
                     YPATAPYLDAVAAPSAWDVHRGDATVTIAVVDSGVDVSHPDLAGRVSATYNAVTHGTD
                     VTDHLGHGTFVAGVAAATADNAIGIAGASMGASVMAVKVADASDQIWTDNEAAGIIWA
                     TDNGAKVINLSLGSDTPSQVESDAIAYAVGKGVLVVAAAGNQPVTSMSYPAAYPNVVA
                     VGATDAAGHCATFSQHGAWVSVGAPGTGITGTTPTAGSAFFKASYDVGDGTSFSSPIV
                     AAEAALLWSMRPTVTAVEVRAAIVRSAHGYAGQDLGAGQVDFRAAEDALRPDSAPTLT
                     APAAASSIAGVVQVSATSSAARVKFSIDGVPLTGTVPVVGGVAGTTWTTWGLVDGPHT
                     ISSVDCSVDDLCNSAPSQADVTLANGAPTITSPTPSQLLSGSATFTATATGGAVAFVI
                     DGVRRGLATAAPYALTFPVSTLTDGTHSVVAVSCSVGDVCHGASSSAVTFQALSLHPK
                     IIARAPVTFSPNGDRRYDTTTVTYSLPDTETVQLQIRNAAGAVVLGPLSLGTLNPGTH
                     AELWNGLTKTGARAATGSYSIELVTSRATTTGTIRGSALTNVVVDLVPPSISSITGDW
                     ALFYPYPDGYRDSYSPTFGLSEPATVTMTIRSSTGAVVRTLTASRPAGRTSMTWNGRN
                     AAGALLGAGTYYWTFVAQDVAGNRSSTARYAAVLNRRYLVTRTA"
     gene            complement(2706..3047)
                     /locus_tag="VGN19_12765"
     CDS             complement(2706..3047)
                     /locus_tag="VGN19_12765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196806.1"
                     /translation="MSTQSSLARLPHLVVVETSSRCGCGDTIDSGERAGEADDRGRLR
                     CLRCMAALQSQAQTAVGHRPVVPGTPAGTGAEHAARVSEQAELLVNRMAAARALGTLV
                     HQLRPLSLSDR"
     gene            complement(3164..3676)
                     /locus_tag="VGN19_12770"
     CDS             complement(3164..3676)
                     /locus_tag="VGN19_12770"
                     /inference="COORDINATES: protein motif:HMM:NF019976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease-related domain-containing protein"
                     /protein_id="HEV7196807.1"
                     /translation="MLDSASEVLVLHHRTLPGRRASIDHLVVGPAGVYVVEVQDGAPL
                     SVAVRRAAKDNAAKGDAGSTPQDDLIVGGHPQNHLLAALDARVEFVKETLADHGLDEV
                     PVVPVLCFLRGMPALVDRRLTARGAHIVAPKGLGRLVATGGPLEAEHRGTLLAMFESA
                     LPGLDGVESS"
BASE COUNT          720 a         1518 c         1642 g          731 t
ORIGIN      
        1 ccgcggtcct ggtgaccagg tacctgcgat tcaggacggc ggcataccgc gccgtgctgc
       61 tccggttgcc ggcaacgtcc tgcgcgacga aggtccagta gtaggttccg gcaccaagca
      121 acgcccccgc agcgttccga ccattccagg tcatcgaggt ccgacctgcc ggccggctgg
      181 ctgtgagggt gcgcaccacg gcaccggtgc tgctgcggat cgtcatcgtg acggttgccg
      241 gctcgctcaa cccgaaggtg ggggagtagc tatcgcggta cccgtcggga taggggtaga
      301 acaatgccca gtcgccggtg atcgaggaga tcgatggcgg cacgaggtcc accacgacgt
      361 tggtgagagc tgagcctctg atggtccctg tcgtggtcgc ccgactggtg acgagctcga
      421 tcgaatagct gcccgtggcc gccctagcgc cggtcttcgt caggccgttc cacagctcgg
      481 cgtgggtgcc ggggttgagg gtgcccagac tcagtggtcc aagcaccacg gcgccggcgg
      541 cgttgcggat ctgcagttgc accgtctcgg tgtcggggag cgagtacgtc acggtcgtgg
      601 tgtcgtaccg cctgtcaccg ttggggctga acgtgaccgg agcgcgcgcg atgatcttcg
      661 gatgcagcga cagggcctgg aaggtcaccg cgctggacga cgctccgtgg cacacatccc
      721 cgaccgagca gctcaccgcg accacggaat gcgttccgtc ggtcaacgtg ctgacgggga
      781 aggtgagggc gtagggagcc gccgtggcca gtccgcgtcg tactccgtca atcacgaagg
      841 cgacggcgcc gccggtcgcg gtagcggtga aggttgcgct cccagacagc agttgcgacg
      901 gggtcggcga ggtgatcgtc ggggccccgt tggcgagtgt cacgtcggcc tgcgagggcg
      961 cggagttgca gaggtcgtcg acgctgcagt cgaccgagct gatggtgtga gggccgtcaa
     1021 cgagacccca ggtggtccag gtggtgccgg cgaccccacc cacgaccggg actgtcccgg
     1081 tcagcggtac gccgtcgatg gagaacttga ccctcgccgc cgacgaggtc gctgacacct
     1141 ggacaacgcc cgcgatcgag ctggctgccg ccggcgccgt caacgtgggt gccgagtccg
     1201 gccgtagcgc gtcctcggcc gcacggaagt cgacctgccc tgcgccgagg tcctggcctg
     1261 cgtacccgtg cgccgaacgg acgatggctg cacggacctc caccgcggtg acggtgggtc
     1321 gcatcgacca aagcagggcc gcctcggcgg cgacgatggg gctggagaac gaggtgccgt
     1381 caccgacgtc atagctggcc ttgaagaagg cgcttccggc ggtgggcgtg gtgcccgtga
     1441 ttccggtgcc cggtgcgccg acgctgaccc aggccccatg ctgggagaag gtcgcacagt
     1501 gaccggccgc gtccgtggcg cccaccgcaa cgacgttcgg gtatgccgcc gggtagctca
     1561 tcgaggtgac gggctggttg cccgccgccg ctacgacgag gacgcccttg cctacggcat
     1621 aggcaatggc gtcgctctcc acctgactgg gggtgtcgct gcccagactg aggttgatca
     1681 ccttggcacc gttgtcggtc gcccagatga tgccggcggc ctcgttgtcc gtccagatct
     1741 ggtcggaggc gtcggccacc ttgacagcca tgacactcgc ccccatggag gcgccagcaa
     1801 tcccgatcgc gttgtccgcc gtcgccgcag cgaccccggc gacgaaggtg ccgtgcccga
     1861 ggtggtcggt gacatccgtg ccatgggtca ctgcgttgta ggtggcgctc actcggccgg
     1921 cgaggtcggg atgagagacg tcgacgccgc tgtcgacgac ggcgatcgtg accgttgcat
     1981 ccccacggtg gacgtcccag gcgctgggcg ctgccacggc atccaagtag ggggcggtcg
     2041 cgggatacag ctggtcgttg gggacgtagc tcagcttctt gagaacaact gggtcgacgc
     2101 gagccacatc ggcacgccgc cgaagctccg ccgcaacccc agcggcggcg gcctgtggca
     2161 cctcgaccga gaccgtcccg acctgctgca gcaaccgccg ttgcagtccg ccctgcgagg
     2221 cgacggcgcg agcgatggca gtcagggacg ccgcagcgcc cctgccgcca cgcaccttga
     2281 ccgagaggac gaccttgccg gagtcatggt tgaccgccac gcggtgcagc agctggtcgc
     2341 gggccgtggg cgtcgaggtg ccaccacccg caactcggcc ggtggccgcg gaggcaccgc
     2401 cctgggtccc tgaggcgccg cccgcagccg catgagcacc cacagccatg gccatcgacg
     2461 ctgtcggaac cagcatcccc acggcgacgg cggcggacac cacagagcgg cggcgaacca
     2521 ggcgcatgaa accccctcga gactccgcca gacgtcgctt tgggtgggga tgcacggcgg
     2581 gaccagccgc gacgccgggc ggcgtctggc gaagatagtt atacagaccc acgagcgcgc
     2641 gatgcgtcag ttgggcccaa tggtgaccgt tagttcgaga tgacttggga cagacgagct
     2701 cagccttacc ggtccgaaag actcagcggg cgtagctggt ggaccagggt gcccagtgca
     2761 cgggcggcgg ccatccggtt cacgaggagt tcggcctgct cggacacgcg ggcggcgtgc
     2821 tctgccccag tgccagctgg agtccctggg acgacgggcc tatggcctac cgcagtctgg
     2881 gcctgcgact gcaaggcggc catgcaccgc aagcagcgca acctgccgcg gtcgtccgcc
     2941 tcgccggcgc gctcgccgct gtcgatggtg tcgccgcagc cacaacgact ggacgtctcg
     3001 acgacgacga ggtgcggcag ccgggccaac gaggactgag tggacatgcc ttgacggtat
     3061 tgctgaacgg ccgactcgag atcgcccttg gcgggtgcag tggccgttcg gccgacgcgg
     3121 gagtgtgcgt gcggactagg tcgatcggcg tcccggttca tggctaggag ctttcgactc
     3181 catcgagacc cggaagggcg ctttcgaaca tggcgagcag ggtgccgcgg tgctcggcct
     3241 ccagtggccc acccgtggcc acgagccgac caaggccctt gggcgcgacg atgtgagccc
     3301 ctcgcgcggt cagacggcga tccaccaggg ccggcattcc gcgcaggaag cacagaactg
     3361 ggaccaccgg cacctcgtcg agtccgtggt cggcaagggt ctccttgacg aactcgactc
     3421 gcgcgtcaag tgcggcgagc aggtggttct gcgggtgacc acccacgatc aggtcgtcct
     3481 gcggggtgga cccggcgtcg cccttggcag cgttgtcctt cgcggcgcgt cgtacggcga
     3541 cggacaacgg agcgccatcc tgaacctcga cgacgtagac gccagcgggg ccgaccacca
     3601 gatggtcgat cgacgcccgg cgcccgggca gcgtgcggtg gtgcagtacc aggacctctg
     3661 aggccgagtc gagcatcggg tccactggac catcggttcg atggtctgac gaacgccgcc
     3721 agttcaggag gtgcgcagcc ttgaagactg atgcccagac ggggttcccc tgacctgcct
     3781 gcccgccatg tcctggccgg cgtcgcgtgg ctcggctcga cgcaggtttg gtcggctcag
     3841 tcgcgagcga ggctggcgcc gcagccgcag ccgcagccgc agccgcggga gcagcagcag
     3901 cctgcgacgc gacagccggc gtcgctgcgc tgtgcggcgt ggtcgttggt ggggtccccg
     3961 ctgccggcgc cgcggggatc ggctcgatgg cttcaggcgt aatggctgcc ggcgcgctca
     4021 gggacagtag gggctgggtg actggagccg ggggcgtcac cgtgacagga cccacggcgg
     4081 gcgccgcatc gagcgacact gcaggggccg gcgcgttcgg gagtggttcc gtggtggtcg
     4141 acgccacttc gaacgtttcc agaggcaccc ggaaccgccg tcggggctcg ccttgaagcg
     4201 cccgcaagca ggacaggcag acgacctgat ccaacgccgg ggagtaacct gcccgttcgc
     4261 caggggcgac caactggcca catccacaca cgccgacctt tgtcagctgg atcacctcgg
     4321 gaaccatcag gtctcctccc atttcgcgtg ttcccagaat ggctttgggt ttgcaccggg
     4381 atgcgttgat ctgggcgcga tgggaccgtt cgctagagga tatggtgatc ctttggtcta
     4441 cgtttcttct agatttggtc atttgtgtgg acggggcgcc gaaccctgtc tatagtgtcc
     4501 tgcccccgct tccgccctgc ggttgaccgc ccgccgcgaa ggatgctgtt cactcgccgc
     4561 taccgaatgc gcgaggtcgt cgtacactca tcgctagcaa acgtggccta g
//
LOCUS       DASYFY010000628         4969 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1465247, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000628 DASYFY010000000
VERSION     DASYFY010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4969
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1465247"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(389..1333)
                     /locus_tag="VGN19_12775"
     CDS             complement(389..1333)
                     /locus_tag="VGN19_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HEV7196808.1"
                     /translation="MTEGTVRWFDADRGFGFIALGQEAEDLYVHASEIVSDDAMKLLR
                     EGQVVEFEIGEGDRGPQARRVRVMANQAADTPLGVLGTVSWYEPAKGYGFITPDGGGA
                     EIFVHSSAIVGGGVVSEGQRVAFLVVDGEKGPQADHLLPLGAQAAQPAVASDGADGTV
                     SWYDGDKGFGFITPESGGPDVFVHVRALADGLPELGEGDRVTYDIVVSEKGPQARDVR
                     LARSSTPRGAPATSTTRARSGHREASDVPARGGEGVVARYDAERGFGFIAPDAGGADL
                     FVHVSVLRGAEALHQGDRVRYQVRQSDRGPQADRVERV"
     gene            1677..1799
                     /locus_tag="VGN19_12780"
                     /pseudo
     CDS             1677..1799
                     /locus_tag="VGN19_12780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(1893..1966)
                     /locus_tag="VGN19_12785"
     tRNA            complement(1893..1966)
                     /locus_tag="VGN19_12785"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1930..1932),aa:Ile,seq:cat)
     gene            2159..2383
                     /locus_tag="VGN19_12790"
     CDS             2159..2383
                     /locus_tag="VGN19_12790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196809.1"
                     /translation="MKVIIVPVAAGLATATGLASATGLAAAAGLAAAAGLAITGAWPS
                     TAADSGDPRRPGLTAPALSTVTAPSSVGNG"
     gene            2582..3097
                     /locus_tag="VGN19_12795"
     CDS             2582..3097
                     /locus_tag="VGN19_12795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3145 domain-containing protein"
                     /protein_id="HEV7196810.1"
                     /translation="MSVAMPRVMTRGVVFIHSTSTALCPHITWALESAIETRLSIEWT
                     PQPAGASLVRAEFPWSGVQGTGAKIASTLRGWDGLRYEVTEEPSAGSDGSRWSHTPSR
                     GIHHTWTSASGDAVINEDRLREVIRLSQGSPEAMAEMIDELLGSDWDAELEPFRYAGD
                     GAPVRWLHKVG"
     gene            3203..3847
                     /locus_tag="VGN19_12800"
     CDS             3203..3847
                     /locus_tag="VGN19_12800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196811.1"
                     /translation="MPRRTIVTAGIVAAGVATLLWCAWRILSAELTLGTGIAAWGLWL
                     VLAAALTTAGAYLREVSRHRSSTRRAGLRPLPAVMLLWVGGVSTLAVFAFMLPIKASA
                     APSAQAPVAQALATAAASRSATTSAAPTTAAAAARASATTASRSLVRPTPTPVQTAAT
                     SSRAVSTASTASPVVRSTSSSDAPTPTPSTSTTSDSLLGVLFPGHGHTKPPSRS"
     gene            complement(3894..>4969)
                     /locus_tag="VGN19_12805"
     CDS             complement(3894..>4969)
                     /locus_tag="VGN19_12805"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEV7196812.1"
                     /translation="HTPPDQVLTKVEVRRLDPSAQYALIATREAWAHAGNPEVEPERL
                     AACIGTGIGGVWTLLSQWDNLREKGPRRVFPLAVPMLMPNASSAAVSLEIGARAGAHT
                     PVSACASGLEAMGYAAEMIRSGRADVAVAGGTEGAVHALPIAGFAAMQALSTRNDDPE
                     RASRPYDTGRDGFVLGEGAGVMVLEEYEHAKARGATIYAEVAGLGMSADSHHIAAPEP
                     GGAGASRAMVEAVQRAGLSPKDIIHINAHATSTPVGDVAESNAIRRAFGDDADGMPVS
                     ATKSMTGHLLGAAGALEGLLTVLALHHRIAPATINLDDFDPAIKLDVVHGEARKLPEG
                     DIAALNNSFGFGGHNVAVVFTSV"
BASE COUNT          735 a         1794 c         1672 g          768 t
ORIGIN      
        1 caaaaggaac cgccagttgc ctgatggtgg cggcacatgg gatgtgcctg ggcatgggcc
       61 gcccccatag cccaacatca ggaccagagg cgcgccccag tgtcatggga ggtgcgtaga
      121 acggcgctct gatttggaga gcgccgctct cttgtgtgtt gtcgagtggt cggcgcgggg
      181 tgcggtgggg tgcgcatagg gcgcgaagcg cccggagcgc ggggtcccat cgcggggccc
      241 cgcgctgcgg cggagccgcg cttgagccag tgaagaagtt ctcaccggtt caggctgact
      301 ccgcacgccg accggccgat cagcggcatg agcgtgcggc gggatcggga catgcctgag
      361 caccagctcc gcccggatcg ccgtccgctc acacccgttc gacgcggtcg gcttgtggtc
      421 ctcgatcgct ctgtcgcacc tggtagcgga cccgatctcc ctggtgcagc gcctcggcac
      481 ctctgaggac cgacacgtgc acgaacaggt ccgcgcctcc cgcgtccggg gcgatgaagc
      541 cgaatccccg ctccgcgtcg tagcgcgcga ccactccctc gccgccgcgc gccgggacgt
      601 cggatgcctc ccggtgtccc gaccgagcgc gggtcgtcga cgtcgcgggt gcacctcgcg
      661 gtgtcgagct gcgcgcgagg cgcacgtcgc gtgcctgcgg gcccttctcg ctcacgacga
      721 tgtcgtacgt cacccggtcc ccctcgccca actcggggag cccgtcggcc agtgcccgga
      781 cgtggacgaa gacatcgggg ccgcccgact ctggggtgat gaacccgaag cccttgtccc
      841 cgtcgtacca ggacacggtg ccgtccgccc cgtcggatgc cacggccggc tgggcggcct
      901 gggctcccaa ggggagcaga tggtcagcct gtggtccctt ctccccgtcg acgacgagga
      961 acgccacccg ctgcccctcc gagaccacgc cgccccccac gatggccgaa ctgtgcacga
     1021 agatctcggc accaccgccg tcgggcgtga tgaagccgta ccccttggca ggctcgtacc
     1081 aggagacggt gccgagcacg cccagcggtg tatcggcggc ctggttggcc atgacccgaa
     1141 cgcggcgtgc ctgggggccg cggtccccct cgccgatctc gaactcgacc acctgcccct
     1201 cccggagcag cttcatcgcg tcgtcgctga cgatctcgga cgcatgcacg tacaggtcct
     1261 ctgcctcctg cccgagggcg atgaagccga acccccggtc ggcatcgaac cagcggacgg
     1321 ttccctcggt cacggctgac tccttgtcga agctacggtc ggtattcccc tagtgtcccc
     1381 gacgggactg cgacaagcgc ccggcgccag acagtgctcg caccgtcgag gcaagtgccc
     1441 gacggcgacg ggcgtccccg agacggtgtc ggagaacccg ctggtgttcg cgaccctgac
     1501 cgccccgtcg ttcggtccgg tccacggcac ccgccccaac aacggcaggt gccggccacg
     1561 gcgtgacacc ggagcccgct cccgcacgca agaccattgt cctgcatggc gatccacgcc
     1621 gaggaggacc cggcgatggg gcagccgata tgcccggact gctacgacta tgcctcgcgg
     1681 gggcgaacat caaggctgta caacgcatgc tggggcattc ctcggcggcg atgacgctcg
     1741 acgtctacgc ggggctgttc ggcgacgatc tcgactcggt ggcggcctcg ctcgattcgc
     1801 atgtgccaca aatgcgccac atcgccgaga tcgaggcccc aaaggaggcc gcgatgacgc
     1861 ggcgtagccc tctgacctgg gaaaacgtcc tgtggggcag gtcgggcttg aaccgacgac
     1921 cgacggatta tgagtccgct gctctaaccg actgagctac tgccccggca ccagctcgct
     1981 gcgcgcgact gggcggcgtg agcctaccgc ccgcagccag cgtcgccgaa gggccgcttg
     2041 aggtctgggc tgccagacca tgagagccgg atcttgacag ccgacccatg gcggcgggaa
     2101 gtcctggcca caggcccgat ggagagcctg ggacctccac caaaccccag gagatgccgt
     2161 gaaggtcatc atcgtccccg tcgctgccgg ccttgccacc gccaccggcc ttgcctccgc
     2221 caccggtctt gccgccgccg ccgggctcgc cgccgccgcc gggctcgcca tcaccggtgc
     2281 ttggccgtcc accgctgccg acagcggcga cccccgccgc cccggactca ccgcaccggc
     2341 cctgagcacc gtcaccgccc caagctcggt cggcaacggc tgatcaacag ggcttccgcc
     2401 tcggctgcgg cgcgccatgg ggtgatggtg ttggtgcaga tgtgatctat ggtgcagaat
     2461 gggcgcgcac agcagcacag gtgcatcagc acacgcataa ctgaacagtc gcggcgccag
     2521 ccggccaacc agtgcaagag gttcgtgggg aagacgtccc tcgcacacca aggaggcccg
     2581 gatgtctgtc gcgatgccgc gtgtcatgac ccgcggggtg gtgttcattc actccacctc
     2641 aactgcgcta tgcccgcaca tcacctgggc cctggagtct gcgatcgaga cccggctctc
     2701 gatcgagtgg acccctcaac ctgccggtgc ctcactggtt cgcgcggagt tcccgtggtc
     2761 cggtgtccaa ggcaccggcg ccaagattgc ctccacactg cgcggttggg acggtctgcg
     2821 ctacgaggtc accgaggaac ccagcgccgg cagtgacggc tcgcgctggt cgcacacccc
     2881 aagtcggggg atccaccaca cctggacgtc cgccagtggt gacgccgtca tcaacgagga
     2941 tcggctgcgc gaggtcattc ggctctcgca gggctcaccc gaggcgatgg ccgagatgat
     3001 cgacgagctg ctgggctcgg actgggacgc tgagctcgag cccttccggt atgccggtga
     3061 cggagcgccc gtgcgctggc tgcacaaggt gggctagtcc ttccctgact ccagtcgccg
     3121 gtgctctgac ctgcgtcttt cccgactatt ggggcatcac cggtaacctc tcaggctgac
     3181 cgacagacct gggaggtgtc ctgtgccccg tcgtaccatc gtcaccgccg gaatcgtcgc
     3241 ggctggagta gcgaccctgc tgtggtgcgc ttggcggatc ctcagcgccg agctcaccct
     3301 cggaaccggg atcgcagcgt ggggtctgtg gctggtcctg gctgccgcgc tgaccaccgc
     3361 gggagcctat ctgcgcgagg tctcgcgaca ccgcagctcc actcggcggg cgggcctgcg
     3421 accgcttcct gcggtgatgc tgctgtgggt gggcggcgtc agcacactgg ccgtcttcgc
     3481 attcatgctg cccatcaagg cctccgcggc tccgagcgct caggctcccg tggcccaggc
     3541 gctcgccacg gcagctgcca gtcggtcggc caccacgagt gctgccccca cgactgctgc
     3601 cgcggccgcc cgggcgagcg cgacgacggc ctcgcgctcg ttggtccggc ccacgccgac
     3661 gccggttcag accgcggcga cgtcctcacg agccgtatcc acggcgtcga cggcctctcc
     3721 cgtagtgcgc tccacgtcgt cttcggatgc accgaccccg acgccgagca ccagcaccac
     3781 cagcgactca ctgctgggcg tgctgttccc gggacacggc cacaccaagc ctcctagccg
     3841 cagctaacgc gcctcgcgcg cgtcgagcgg gggccgcacc gcgggctcgc acctcagacg
     3901 ctggtgaaga ccaccgcgac gttgtgccca ccgaagccga acgagttgtt caacgcggcg
     3961 atgtcgccct ccggcagctt gcgtgcctcg ccatgtacga cgtcgagctt gatggcgggg
     4021 tcgaagtcgt cgaggttgat ggtcgcgggc gcaatccggt gatggagggc gagcaccgtc
     4081 aggagcccct ccagcgcacc agccgcaccg agcaggtggc cggtcatcga cttcgtggca
     4141 ctgaccggca tcccatcggc gtcatcgccg aacgcgcggc ggatggcgtt ggactccgcc
     4201 acatcgccca cgggcgtgga cgtcgcgtgt gcgttgatgt ggatgatgtc cttgggggac
     4261 agtccggctc gctggacagc ctcgaccatg gcgcgtgacg ctccagcacc ccccggctcc
     4321 ggcgcggcga tgtgatggga gtcggcagac atcccgagtc cggcgacttc ggcgtagatg
     4381 gtggctcccc gggccttggc gtgctcgtac tcctcgagca ccatgacgcc cgcgccctcg
     4441 ccgaggacga acccgtcgcg gccggtgtcg tacgggcggg atgcccgctc cggatcgtcg
     4501 ttacgggtcg agagcgcctg catggcggca aacccggcga tgggcagcgc gtgcacggct
     4561 ccctcggtgc ctccggctac tgccacgtcg gcgcggccgc tgcggatcat ctctgcggca
     4621 taccccatgg cctccaggcc cgaggcgcac gcggacacgg gggtgtgcgc gccggcgcgc
     4681 gcgccgatct cgagcgagac cgcagcggag gacgcgttcg gcatgagcat ggggaccgcc
     4741 agcgggaaca ctcggcgggg ccccttctcc cggaggttgt cccactgcga cagcagcgtc
     4801 cacacgccac cgatcccagt gccgatgcag gcggccagcc gctcgggctc gacttcgggg
     4861 ttgccggcgt gggcccaggc ctcgcgcgtg gcgatcagtg cgtactgggc gctcgggtcc
     4921 aggcggcgca cctctacctt cgtcagcacc tggtccggcg gggtatgga
//
LOCUS       DASYFY010000629         2129 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1098067, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000629 DASYFY010000000
VERSION     DASYFY010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1098067"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1486
                     /locus_tag="VGN19_12810"
     CDS             <1..1486
                     /locus_tag="VGN19_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HEV7196813.1"
                     /translation="LHDLTPALLVGSLVLLVCVAAVRLSVRSGLPSLLIYLAIGLALG
                     DSGFGIQFNSAQLTQVLGYAALILILSEGGLSTRWEGIRRSVAPAAVLSTGGVLVSVG
                     VVALAARFILRQDWNTALLVGAILSSTDAAAVFSVLRRVPLPRRITGMLEAESGFNDA
                     PVVILVTALAGRSADPSHAQSWAALAGTAVLELVAGAAIGLAVGWLGGQFMRRAAGGS
                     SGLFSIGIVALTVLAYAAAASVHASGFIACYLAALVLGNLRLPHGPAVQGLSTALGWL
                     AQIGLFVLLGLLATPSRMAAQVLPAIVIGLVLVLVARPLSVLAAVGPFRLGWRDQVFL
                     SWAGLRGAVPVVLATVPLTIGAKGVDWIFELVFVLVVIFTLIQGPTLPWLANRLKITE
                     DYQSLDLAVESTPLEELNAEMLQVTVGHASRMHGVEVFELRLPEGANVTLVVRGGRGF
                     VPVANTSIRRGDQLLIVTTAESRAKAEKRVRAVSQHGRLAGWKA"
     gene            1598..1738
                     /locus_tag="VGN19_12815"
                     /pseudo
     CDS             1598..1738
                     /locus_tag="VGN19_12815"
                     /inference="COORDINATES: protein motif:HMM:TIGR02605.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FmdB family zinc ribbon protein"
     gene            complement(1753..1935)
                     /locus_tag="VGN19_12820"
     CDS             complement(1753..1935)
                     /locus_tag="VGN19_12820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196814.1"
                     /translation="MPEDELELELEFEFEFEFEFEFEPDESDEPELPEVLDELEESPP
                     LLAGTDADDPLRESVR"
BASE COUNT          259 a          733 c          732 g          405 t
ORIGIN      
        1 tctccatgac ctgacgccgg cgctgctcgt ggggtcgctg gtcctgctgg tgtgcgtggc
       61 cgcggtccgg ctctcggtca ggtcgggact gccctccctg ctgatctatc tggcgatcgg
      121 actcgcgctg ggcgactccg gcttcgggat ccagttcaac tccgcgcagc tcacccaggt
      181 gctcgggtat gccgcgctga tcctcatctt gtccgagggc ggtctgagca cgaggtggga
      241 aggcatccgc cggtctgtcg caccggccgc ggtgctgtcg accggcggtg tgctggtatc
      301 agtgggcgtc gtcgccctgg ctgctcgctt catcctcagg caggactgga acaccgctct
      361 gttggttgga gccatcctgt cctcgacgga cgcggccgca gtgttctctg tgctgcgcag
      421 ggtgccactg ccacgacgga tcaccgggat gctcgaagcg gagtcggggt tcaacgacgc
      481 cccggtcgtg atcctggtga ccgcgctggc cgggcgaagc gccgaccctt ctcatgcgca
      541 gtcctgggct gcgctggccg ggacggccgt gctcgagctg gttgcgggcg cggcgatcgg
      601 gctggccgtg ggctggctcg gcggtcagtt catgcgccgg gccgcgggtg gttcgtcggg
      661 cctgttcagc atcggcatcg tcgccctcac cgtgctggcg tatgccgcgg ccgcgagcgt
      721 gcatgccagc ggcttcatcg cgtgctacct ggctgccctg gtgctgggca accttcggtt
      781 gccgcacggc ccggctgtcc aagggttgtc gacagcgctg ggctggctgg cccagatcgg
      841 cctcttcgtc ctgttgggcc tgttggcgac gccgagcagg atggccgccc aagtcctacc
      901 cgcgatcgtc atcggcctgg tgctcgtcct ggtcgcccga ccgttgtccg tgctggccgc
      961 ggtggggccg ttccggctgg ggtggcgcga ccaggtgttc ctgtcgtggg ccgggctgcg
     1021 cggtgccgtg cctgtcgtgc tggccaccgt gccactgacg atcggagcca aaggagtcga
     1081 ctggatcttc gagctggtgt tcgtcctggt cgtcatcttc acgctcatcc agggcccgac
     1141 cctgccgtgg ctggccaacc ggctcaagat caccgaggac taccagtcgc tcgacctcgc
     1201 ggtggagtcg acgccgctgg aggagctgaa cgccgagatg ctccaggtca cggtgggtca
     1261 cgcctcccgg atgcacggcg tcgaagtgtt cgagctccgc ctgcccgagg gcgcgaacgt
     1321 caccctggtc gtgcggggcg gacgcggctt cgtcccggtc gccaacacct cgatccggcg
     1381 tggtgaccag ttgctcatcg tgacgaccgc agagtctcgc gcgaaggccg agaagcgggt
     1441 ccgagcggtc agccagcacg gccggttggc cgggtggaag gcctagcccc ctctgggtgc
     1501 aggatcacgc gacgcggacg cctatacttg gcactcgatt actgcgagtg ccagcccggc
     1561 tctcggcccg tttcttgtgc cccctctgga ggaacccgtg ccgacgtact cctacgcctg
     1621 caccgcctgt gaccaccgct tcgacgcggt tcagtcgttc agcgacgact cgctcacggt
     1681 ctgccccgag tgcagcgggc gcctgcggaa ggtcttcaac gccgtcggcg tcgtcttcaa
     1741 gggtgggggc ttctatcgca cggactcccg cagtgggtcg tccgcgtcgg tgcccgccaa
     1801 gagtggtggg gactcttcca gctcgtccag cacctcgggc agctccggct cgtcggactc
     1861 gtccggctcg aactcgaact cgaactcgaa ctcgaactcg aactcgagct cgagctcgag
     1921 ctcgtcctct ggcacgtcct cgagctcgtc cgccggctcc tccggttcat cgtcctccag
     1981 ggatggctcc gccgcctgac ctggccacag gcgaccggca gacgaacggc acacgtccga
     2041 ctcgcaggcg gctgtgcaca ggcgccgcag ggctcacccg tgctccacag gcccgtctgg
     2101 aggctttcct gtgggccgtc cacgcctcg
//
LOCUS       DASYFY010000630         3261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1569553, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000630 DASYFY010000000
VERSION     DASYFY010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1569553"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VGN19_12825"
     CDS             complement(<1..285)
                     /locus_tag="VGN19_12825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEV7196815.1"
                     /translation="MAGNSQRRGAIRKGASKKGASVGSGGQRRRGLEGRGPTPKAEDR
                     PKHKAHKMAGAAAKRSGPGAGQRPAGSRSSTRRGGKPSSEIVAGRNSVVEA"
     gene            complement(296..1735)
                     /gene="cysS"
                     /locus_tag="VGN19_12830"
     CDS             complement(296..1735)
                     /gene="cysS"
                     /locus_tag="VGN19_12830"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007927245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEV7196816.1"
                     /translation="MSLRLYDTAARELRDFAPLEPGRVGIYICGLTTQAAPHIGHVRF
                     TVAFDVLRRWLVGRYSYDVTLVRNVTDIDDKILNKSADAGEPWFALSYRNERATAAAL
                     DSLGVLPPTYEPRATGHIPEMVTLMETLVKKGHAYAAPDGSGDVYFDVRSFPEYGSLT
                     HQRIEDMEAAADADPRGKRDPRDFALWKGHKESEPQTASWPTPFGDGRPGWHLECSAM
                     ARKYLGDSFDIHGGGVDLRFPHHENEQAQSHAAGLGFATYWLHNAWVTVGGEKMSKSL
                     GNSLVVSEITKVARPLALRYYLTAAHYRSTIEYHEGSLVEAEATVERIEGFLRRALRV
                     LPEDTSVTPDPALVPEAFAAAMDDDLNVSGALAVIHETVRAGNTALDDGDPNALVTAF
                     AAVVAMTDLLGVNPLDPRWGERADAGVGDTQSALDTLVQEQLELRAKARAARDFTTAD
                     AIRDQLGAAGIVIEDTASGANWSLARRES"
     gene            1939..>3261
                     /locus_tag="VGN19_12835"
     CDS             1939..>3261
                     /locus_tag="VGN19_12835"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEV7196817.1"
                     /translation="MATALAAAAMAGQAQAAPAMSTAYTAHGPAPRTLPGGYTNLVVI
                     YEENHSFDNLYGSWGRVGADRVDGATSPSVPQVAQNGTKYGCLLQDDVNLATPPQPNT
                     CQDASHGVGASAFTNKSFTIDKYIKPTDTTCPPEGTSAPNGVLKGSGQPGGCTRDQVH
                     RFYQEQYQLNGGKQNRYVTGSDAVGLTMGRYDTKALPIYTYLHSHGAPNYVLADRFFQ
                     GAFGGSFLNHQFLIAARAPLDTSAGALGAKNSVVDANGMPNSYPLYKATGPVVDGQLT
                     QKCADAADNNRKAACGNFAINTVQPSSAPSGKGAKIPLIDDATNPNIGDRMSAKGVSW
                     NWYAGGWDDAVAGHPGANFQYHHQPFNYFANYAAGAPGRSHLQDEKNFVAAAKNGTLP
                     QVSFVKPYGSENEHPGYASESNGSDHLVDLLKTIASGPQAKKTLVVVTY"
BASE COUNT          532 a         1141 c         1077 g          511 t
ORIGIN      
        1 cgcctccacc accgagttgc gcccggcgac gatctcgctc gagggcttgc cgccacgtcg
       61 cgtcgagctg cgcgaccctg cgggccgctg acctgccccg ggtccgctgc gcttggctgc
      121 cgcgccggcc atcttgtggg ccttgtgctt gggacggtcc tccgccttgg gggtggggcc
      181 gcggccttcg aggccacggc gacgctggcc gcccgaaccg acggaggcgc ccttcttgga
      241 cgcacccttg cggatggctc ctcggcgttg ggagttgcct gccatggtgt gcctctcagc
      301 tctcgcggcg ggcgagcgac cagttcgctc ccgatgccgt gtcctcgatg acgatgcccg
      361 ccgcgcccaa ctggtctcgg atcgcgtcgg ccgtcgtgaa gtctcgtgcc gcccgagcct
      421 tggcacgcag ctcgagctgc tcctgcacca gggtgtcgag agcggactgg gtgtcgccga
      481 cgccggcgtc cgcgcgctcg ccccatcgcg ggtcgagcgg gttcactccc agcaggtcgg
      541 tcatggcgac cactgccgcg aaggccgtca ccagggcgtt cgggtcgccg tcgtcgagcg
      601 cagtgttgcc agcgcggacg gtctcgtgga tcacggccaa cgcgccggaa acgttgagat
      661 cgtcgtccat cgccgcggcg aacgcctcgg ggaccagagc cgggtccggc gtcaccgagg
      721 tgtcctcggg gagcacccgc agcgcacgac gcaggaaacc ctcgatgcgt tcgaccgtcg
      781 cctcggcttc gacgagtgat ccctcgtggt actcgatcgt cgagcggtag tgcgccgcgg
      841 tcaggtagta gcgcagggcg aggggccggg cgaccttggt gatctcggag acgaccagcg
      901 agttgccgag cgacttgctc atcttctcgc cgccgaccgt gacccaggcg ttgtgcagcc
      961 agtaggtcgc gaaccccagt ccggcggcgt gcgactgcgc ctgttcgttc tcgtggtgcg
     1021 ggaagcgaag gtcgacgcca cccccgtgga tgtcgaacga gtcgccgagg tatttgcgcg
     1081 ccatcgccga gcactccagg tgccagcccg ggcgcccgtc accgaacggg gtcggccacg
     1141 acgccgtctg cggctcggac tccttgtggc ctttccacaa cgcgaagtcg cgagggtccc
     1201 gcttaccgcg ggggtccgcg tctgcagccg cctccatgtc ctcgatgcgc tggtgcgtca
     1261 gggagccgta ctccgggaag ctccgcacgt cgaagtacac gtcgccgctg ccatcaggtg
     1321 cggcatacgc atgccccttc ttcaccaggg tctccatcaa ggtgaccatc tcggggatat
     1381 gcccggtcgc gcgcggctcg taggtcggcg ggaggacccc cagcgagtcg agggcagcgg
     1441 cggtggcgcg ttcgttgcgg tacgagaggg cgaaccaagg ctcgccggcg tccgcagact
     1501 tgttcaggat cttgtcgtcg atgtccgtca cattgcgaac cagcgtcacg tcataggagt
     1561 accgcccgac cagccagcgc cgcagcacgt cgaaggccac ggtgaaacgg acatggccga
     1621 tgtggggagc agcctgggtg gtgagtccgc agatgtagat gcccacccgg cccggttcga
     1681 ggggggcgaa gtcgcgcagc tcgcgcgcgg cggtgtcgta caggcggaga ctcacgggcg
     1741 caagggtacc ttcgcgccgt gcccccagcc caaagggcgg ccgtcgccca aacgtcgcat
     1801 gatgttcaac tccgggcaga cctgctgtca cgccgcgccg cacgccaggt tgtagaccgg
     1861 gtggtggtgc gcgacgcgca gcctcgtcaa gagaggaatc cagtgaatag acgatcttcc
     1921 gtagctgtga tcggagcggt ggccaccgcc ctcgcagctg ccgccatggc cgggcaggca
     1981 caggccgccc ccgcgatgag taccgcgtat accgcgcatg ggcccgcccc tcgcaccctc
     2041 cccggtggct acaccaacct cgtcgtcatc tacgaggaga atcactcgtt cgacaacctg
     2101 tacggctcct ggggtcgggt tggcgcagac cgggtcgacg gagccacgtc gccgtccgtg
     2161 ccgcaggtcg cccagaacgg caccaagtac gggtgtctgc tccaggacga cgtcaacctc
     2221 gcgacgccgc ctcagcccaa cacgtgccag gacgcgagcc acggggtcgg ggcgagcgcc
     2281 ttcacgaaca agtccttcac catcgacaag tacatcaagc cgacggacac gacctgtccc
     2341 ccggagggca cgtccgctcc caacggggtc ctcaagggca gcggccagcc cggcgggtgc
     2401 acgcgcgacc aggtgcaccg cttctaccag gagcagtacc agctcaacgg tggcaagcag
     2461 aaccgctacg tcacgggctc ggacgcggtc ggtctgacca tgggtcgtta cgacaccaag
     2521 gcactgccca tctacacgta cctgcacagc catggcgccc ctaactacgt cctcgctgac
     2581 cgcttcttcc agggcgcctt cggtggctcg ttcctcaacc accagttcct catcgccgct
     2641 cgcgcgccgc tggacacctc cgcgggtgcc cttggagcga agaactcggt ggtcgacgcg
     2701 aacggcatgc cgaactcgta cccgctgtac aaggccaccg gacctgttgt cgacggccag
     2761 ctcacgcaga aatgcgcgga tgccgcggac aacaaccgca aagcagcgtg cggcaacttt
     2821 gcgatcaaca cggtccagcc gtcgtcggct ccttccggca agggcgccaa gatcccgctc
     2881 atcgacgacg ccacgaaccc gaacatcggt gaccgcatgt ccgccaaggg cgtgagctgg
     2941 aactggtatg ccggtggctg ggacgacgcg gtcgcgggtc acccgggcgc gaacttccag
     3001 taccaccacc agccgttcaa ctacttcgcc aactacgcgg ccggtgcacc tgggcgctct
     3061 cacttgcagg acgagaagaa cttcgtcgcg gccgcgaaga acggcaccct gccgcaggtc
     3121 agcttcgtca agccgtacgg gtcggagaac gagcacccgg gctacgccag cgagagcaac
     3181 ggcagcgacc acctggtcga tctgctgaag acgattgcct ctggcccgca ggccaagaag
     3241 accctcgtgg tcgtgaccta t
//
LOCUS       DASYFY010000631        14330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_886958, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000631 DASYFY010000000
VERSION     DASYFY010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 14330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14330
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886958"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1611)
                     /locus_tag="VGN19_12840"
     CDS             complement(<1..1611)
                     /locus_tag="VGN19_12840"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEV7196818.1"
                     /translation="MTERSTGAELGGRLTRLARVTASLARAEDVEAVNKIVVQQSADA
                     VGATIASLSLREGPDSVRLLGLRGGLQGDEERYSSYPLSVSTPTTDVIRSGKRLILTG
                     RGEILRRYPDIPGADRGERSIVCLPLKVASGTIGAIGLSFPGQRMLSDAELDFFEILA
                     DTCAQALVRIQAEADAASRQAKLRFLAEASAELASSLDYEATLARVARLAVPTFADWC
                     AIDRVADGRLQRLAVAHVDPAKVELARELAERYPSDPNAAVGAWNVMRTGQSELIAEI
                     TDEMLVAGATDQEQLRLARELRLRSVVTVPLIARGRVLGVITWVSAESERTYTSEDVA
                     FAEDLAKRAAVAIDNSELHSETLAAAVRLQHAVLPDSLPVVDGFEIAALYNPSGRTDV
                     GGDFYDVIPLVDGRIALFVGDVMGRGVAAAAAMAQMRAAVRAYVALDPTPEVVLERLD
                     RMLLLYGSEQMVTLAFLIVDPGRDELVLANAGHPPPVLLRASGEAEQLPTANGSPLGI
                     LSRQRVPHAVRFQAGDTVVVFTDGLIERR"
     gene            complement(1685..3241)
                     /locus_tag="VGN19_12845"
     CDS             complement(1685..3241)
                     /locus_tag="VGN19_12845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000030 - mannosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006493 - protein O-linked glycosylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid carrier-dependent
                     glycosyltransferase"
                     /protein_id="HEV7196819.1"
                     /translation="MTRAEQLRSRLLGFRPTDTLWGWLGPIFFAVVGGLMRFWALGRP
                     HQLVFDETYYVKQGVSMLDYGVEMRVPDSLKKPDALFTAGTPNVFGTEGDLVVHPPVG
                     KWIIALGEQLFGQTSSFGWRFSVCLLGTVSILMIGRAARRMFGSSLLGTIAAFLVAFE
                     GHHFVQSRTGLLDLIVMFWALAAFCALLLDRDRSRAILADRVAAMSPRQRSAGTGPSL
                     GLRPWRWVAGACLGLATGTKWSGLFFLIAFGLMTVLWDLGARRAAGVRHWFWGMVLRD
                     GLWAALVMCGTALATYLVSWTGWFLSNAGYDRQWAASHPVKGGTWVPGAVRSLWEYHQ
                     EIYRFHVNLRDNHPYKTNPWSWVIQGRPTSYFYEGPKRGSDGCLVDQCSKAITSIGTV
                     SIWWLGAAGIFVALYWWLFRRDWRAGAILAGLAGGYLPWFALEERTIYSFYTVAFEPW
                     IIFAVVFVLGLVLGPATASRQRKQIGLAVVGVYCLLTLALFAFFWPIYTAQVIPQGQW
                     SARMWFPSWI"
     gene            3285..4127
                     /gene="rsmI"
                     /locus_tag="VGN19_12850"
     CDS             3285..4127
                     /gene="rsmI"
                     /locus_tag="VGN19_12850"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEV7196820.1"
                     /translation="MPSAGVLVLAATPIGDPRDAAPRLAHEIATADVVAAEDTRLLRR
                     LCADLGVGPRGSVVSYHEHNEASRTPVLVQRLVAGERVLVVTDAGMPSVSDPGYRLVT
                     AAVEAGVQVTCVPGPSAVLMALAVSGLPVDRFCFEGFLPRKAGERSRMLAALADERRT
                     MVFFEAPHRLDVTLAAMATAFGASRRAAVCRELTKTYEEVRRGGLSELALWAADGVRG
                     EITVVVEGATVVAASLEDAVPMVRERVAAGERLKDVCADVAATTGLSKKALYDAALVA
                     KAVS"
     gene            complement(4120..4896)
                     /locus_tag="VGN19_12855"
     CDS             complement(4120..4896)
                     /locus_tag="VGN19_12855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEV7196821.1"
                     /translation="MSTAVIPAAATRRQLLTETGLVLGVSLGASAVWSLLALVNKLTQ
                     HVALNHQTTGMNNSVTPDRPWLDLAYQLVGIAIALVPVALALHLLTRDRPDARHVIGF
                     DLRNPAGDLLRGVALAAAVGLPGLGLYAAARALGLNTTIAAANLTDTWWAVPVLVLSA
                     VQNAVLEEVVMVGYLFTRWRRAGWSVPTVVLASAAIRGSYHLYQGFGGFLGNLVMGLL
                     FGWVYLRTRRVGPLVVAHTLLDVVAFVGYTLLRSHLSWLS"
     gene            complement(5190..6122)
                     /locus_tag="VGN19_12860"
     CDS             complement(5190..6122)
                     /locus_tag="VGN19_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196822.1"
                     /translation="MSELPFNPKAPFTRKRALKAGLSDADLSGTGYQQLFWGVYISSS
                     VKATLVVRALAALMVAPPGSIVSHHSAASLWGGIAPDSGEVHVSMPMGNRQKTRGIRS
                     HRVARLPVPNTRRGLPITSPEQTFIDLAHYCDLVQLVTLGDSLVKAKATTTAKLKAAC
                     EGSVARHAALARRAASLVRERVDSPMESRLRMLVVLAGLREPRVNFELCEEDGRVKYR
                     LDLSYPDQLLAVEFDGRPHVEVRSRWEGDVIRREDVEADGWRFVVVTSTQFYGSASAV
                     LDRIVAAMRERGIPVPRRLRGEWRRYFSGPDDLA"
     gene            6378..8246
                     /gene="metG"
                     /locus_tag="VGN19_12865"
     CDS             6378..8246
                     /gene="metG"
                     /locus_tag="VGN19_12865"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010534770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEV7196823.1"
                     /translation="MTSVLSAVAWPYANGPRHLGHVAGFAVPSDVFSRYMRMAGHNVL
                     MVSGTDEHGTPILVQADKEGVSARDLADKNNRIIVEDLAQLGCSYDLFTRTTTPNHYA
                     VAQALFTQVWKNGYMIEQTTRGAISPSTGRTLPDRYIEGTCPICGYAEARGDQCDNCG
                     NQLDPTDLINPRSKVNGEIPEFIETQHFFLDLPALADALREWLEGREASGTWRPNVIK
                     FSMNILDDIRPRAMTRDIDWGIPVPLDGWRDQPAKRLYVWFDAVVGYLSASVEWARRI
                     GEPERWRDWWNDPDALSYYFMGKDNITFHSQIWPAELLGYAGKGSRGGEPGEFGVLNL
                     PTEVVSSEYLTMESKQFSSSRGHVIYVRDVLSRYQPDALRYFLCAAAPESQDSDFTWR
                     EFVTRTNTELVAGWGNLVNRTATMISKNFGEIPPAGELLAQDKALLDSINQGFDTVGG
                     LIGRHRLRQAVAEAMKVVGEANKYVTDEAPFKLKGEDQRERLGTVLHVLAQAVLDLNT
                     MLAPFLPHSSNAVHTTFGGDGEFMPMPVIEEVDDLDGGHSYPIITGQYSSTPRWESRP
                     VRVGAPVGMPTPIFTKLDESVVEEELKRLGGKGPEGPEDPADPEGTEGAEGADGDA"
     gene            8233..9096
                     /locus_tag="VGN19_12870"
     CDS             8233..9096
                     /locus_tag="VGN19_12870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEV7196824.1"
                     /translation="MATPDPAGGSGHGRTPEAPAPLPIAVVDNHTHLDIARDGEPAVD
                     VASAVAQAKAVGVDRLVQIGCDLPGARFTVEMIDLHPAMLGGVALHPNEAPRLAAEGG
                     LDAAYAEIEELAAHPRVRVIGETGLDYFRTGPDGVGVQQDSFRWHIDLAKRTGKALQI
                     HDRDAHEDVLRILEEEGAPERTVLHCFSGDVSMARTCADRGYYLSFAGTVTFKNARGL
                     RDALSVTPLERVLVETDAPYLTPAPWRGATNSPYLVPLTVRAMAGTLGVAVPTLCQAI
                     SANSEAVYGPW"
     gene            9483..10580
                     /locus_tag="VGN19_12875"
     CDS             9483..10580
                     /locus_tag="VGN19_12875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquitin-like domain-containing protein"
                     /protein_id="HEV7196825.1"
                     /translation="MTTLVAGALGVAYLDKSVTLSVDGKVSTVHAFGSTVGDVLSTQN
                     ITPGAHDIVAPGTGTSVSDGEKIVVRYGRKLTVTIDGQTREYWTTATTVAAALADLGI
                     RADSAKLSASRSEPLGRQGLTLSLTTPKNVVVRVDGKTLSEASTGATVADVLGELNVT
                     PGPTDRVQPGLSTPVTDGLRIAVLRVSATQVKETVAIPAPVTTRSDPSLPAGQSSTIQ
                     AGSDGAKVVTYTVTTVDGKLETKQLVGSQVTQQPVTRIVAQGTKPAPAPAPAAPAPSA
                     GNTSGAGLNTSNSAMWDRIAQCESGGNWHINTGNGYYGGLQFDYNSWLANGGADFAPR
                     ADQASREQQITVANRYYAKSGLGPWSCAHAA"
     gene            10671..11549
                     /gene="rsmA"
                     /locus_tag="VGN19_12880"
     CDS             10671..11549
                     /gene="rsmA"
                     /locus_tag="VGN19_12880"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018158228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEV7196826.1"
                     /translation="MVEQEASGYLGAAQIRQIAAGLGMRPTKQWGQNFVVDANTVKRI
                     VRLARVTHDDSVVEVGPGLGSLTLALLPVVGHVTAVEVDPTLAGALPGTVARLAPAYA
                     DRLTLLNADAMQVRELPDPQPTALVANLPYNVSVPVVLSFLEAFPTLERVLVMVQLEV
                     AERLAAPPGSKAYGVPSAKAAWYAAVRLAGTVPRSVFWPVPNVDSGLVFLERRAVPTT
                     SATRQETFACIDAAFAQRRKTLRAALAGWAGSAPRAEECLREAGIDPRTRGEQLGVAE
                     FAAIAAALASLQPGWR"
     gene            11595..12527
                     /locus_tag="VGN19_12885"
     CDS             11595..12527
                     /locus_tag="VGN19_12885"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEV7196827.1"
                     /translation="MTSVAPTPASVTARVPAKVNLELLVGAPRADGFHPLSTVFHAVR
                     LYDEITVTTAASWGLTVSGPQALGVPVDGNNLATKAARRLAEVGQVEEAVHISIRKEI
                     PVAGGMAGGSADAAATLVACDALWGLSLPRPRLEQLAAELGSDVPFLLAGGTSMGSGR
                     GEILTPVLARGTYHWVFALSEGGLSTPQVYAECDRLREGRPVPEPAPSPQMMQALRSG
                     DARALGAALTNDLQAAAISLMPALGDVLDAGLEFGALGGIVSGSGPTVAFLAEDHESA
                     LDLAVSLTASGAVQDVRRATGPAHGAHLVGAPRA"
     gene            12538..>14330
                     /locus_tag="VGN19_12890"
     CDS             12538..>14330
                     /locus_tag="VGN19_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEV7196828.1"
                     /translation="MANLISVERASLALGTAQVLDEVSLGVLGGDRIGIVGRNGGGKT
                     TLLRVLAADREVDSGRVTRVGGAQVGVLAQEDELDPDDTVRAVVLDGLDEHVWAGDAR
                     IRDVMAGLLGGLEAESMGGLDATVGPLSGGERRRLALARLLVADPTVLMLDEPTNHLD
                     VEGVAWLAEHLVQHRARPDNALVAITHDRWFLDAVATQTWEVVDGTVSSFEGGYAAYV
                     LAKAERERMATVTAERRDNLLRKELAWLRRGAPARTSKPKFRIEAANTLIADEPPPRD
                     DVELTRFATTRLGKDVVDLIDASVVLGDRPLLDRVTWRLAPGERVGIVGVNGSGKSTL
                     LRTIAGQLSLASGKRRQGVTVRLAYLTQEVRELERFGDWRVIEAIEDVRSSIQLGRKE
                     ISAAQLAQRLGFTGGRQQTRVRDLSGGERRRLQLTRLLMDEPNVLLLDEPTNDLDIET
                     LTSLEDLLDGWAGTLLVVSHDRYLLERVCDTQVALMGDGKLRALPGGVEQYLTLLHAE
                     VHAVQAGGGTSQTGPASPAAAALAESVVGPSPAELREARKDLARIEKQLARLAEREDR
                     IHAAMAEAAADHARALELNGQLREVVDERET"
BASE COUNT         2332 a         4919 c         4965 g         2114 t
ORIGIN      
        1 gcggcgctcg atcaacccgt cggtgaagac cacgaccgtg tctccagcct ggaaacgcac
       61 ggcgtgcgga acccgctgac gactgagtat gccgaggggg cttccgttcg cagtcggcag
      121 ctgctcggcc tcgcctgagg cgcgcagcag caccggcggg gggtggcccg cgttggcgag
      181 caccagctcg tcacgtccgg ggtcgacgat gaggaaggcc agcgtcacca tctgctcgct
      241 gccgtaaagc agaagcatcc ggtccagccg ctccagaacc acctcggggg tggggtcgag
      301 cgcgacatac gcacgaaccg ccgcgcgcat ctgggccatc gctgctgccg cggcaacccc
      361 tcggcccatg acgtcgccca cgaaaagggc gatgcgcccg tcgaccaagg gaatgacgtc
      421 atagaagtcg ccccccacat cggtgcgacc cgacgggttg tacagcgctg cgatctcaaa
      481 gccgtcgacc acagggaggc tgtccgggag gaccgcatgt tgcagacgca cggctgccgc
      541 gagcgtctca ctgtgcagct cggagttgtc gatggcgacg gcggcccgct tggccaggtc
      601 ctcggcgaag gcgacgtcct cgctggtgta cgtgcgctcc gactctgctg acacccaggt
      661 gatcacgccg agcacccgcc cgcgggcgat gagcgggacc gtcaccacgc tccggaggcg
      721 tagttcccga gcgaggcgca gctgttcctg gtccgtggcc ccggcgacca gcatctcgtc
      781 ggtgatctcg gcgatgagct cgctctgccc ggtcctcatg acgttccagg cgccgacggc
      841 agcgttgggg tcactcgggt accgctcggc cagctcgcgc gcgagctcga ccttggcggg
      901 gtcgacgtgg gcgacggcca gtcgctggag gcgcccgtcc gccacgcggt cgatagcgca
      961 ccagtcggca aaggtgggca ccgcaagcct ggccacgcgc gccagggtcg cctcgtagtc
     1021 gaggctgctc gccagctcgg ccgaggcttc cgccaggaac ctcagcttgg cctgacggct
     1081 cgcagcgtcc gcctcggcct ggatccggac cagagcctgt gcgcaggtgt ccgcaagaat
     1141 ttcgaagaag tcgagctccg cgtcgctgag catccgttga ccagggaagg acaggccgat
     1201 agcgccgatc gttccgcttg ccaccttcag gggcagacag acgatggaac gctcgccgcg
     1261 gtcggctccc ggtatgtcgg ggtagcggcg caggatctcc ccgcgtccgg tgaggatgag
     1321 ccttttccca gaacgaatga catcggtcgt cggcgtcgaa accgacaggg gataggagct
     1381 gtaccgttcc tcgtcgcctt ggaggccccc acgcagcccc agcagtcgca cactgtcggg
     1441 tccttcgcgt agcgacaggg aggcgatcgt cgcgccgacc gcgtcggcgc tctgctggac
     1501 cacgatcttg ttgaccgcct caacgtcctc ggctcgcgcc agggacgcgg tcacccgggc
     1561 aagacgcgtc agccggccgc ccagctctgc ccccgttgac cgctctgtca cgagggccat
     1621 gatggcagtg cgaccttggc ttggcggtcc gatccggaaa tgcgggggcg tgcggacggg
     1681 ggggctagat ccaactgggg aaccacatgc gtgccgacca ctggccctgc gggatcacct
     1741 gcgccgtgta gatcggccag aagaacgcga acagtgcaag cgtcagcagg cagtagacac
     1801 cgacgaccgc caagccgatc tgcttgcgtt gcctgcttgc cgtggcggga ccgagtacca
     1861 gcccgagtac gaagacaacc gcgaagatga tccacggctc gaaggcgacc gtgtagaagg
     1921 agtagatggt gcgttcctcg agggcgaacc acggcaggta accgccggcc aacccggcaa
     1981 ggatcgcccc agcgcgccag tcgcggcgga acaaccacca gtagagcgcg acgaagatgc
     2041 ccgcagcgcc cagccaccag atcgagacgg tgccgatcga ggtgatggcc ttggagcact
     2101 ggtcgaccag gcagccgtcc gatccgcgct tggggccctc gtagaagtac gaggtgggtc
     2161 gtccctggat gacccaggac cacgggttcg tcttgtacgg gtggttatca cgcaggttga
     2221 cgtggaaccg gtagatctcc tggtggtact cccacagcga gcgcacggcg ccgggtaccc
     2281 aggtgccgcc cttgacgggg tgactcgccg cccactgtcg gtcatagccg gcgttcgaga
     2341 ggaaccatcc ggtccatgac acgagatagg tggctaacgc ggtgccacac atcaccagcg
     2401 ccgcccagag cccgtcccgc agcaccattc cccagaacca gtgccggacc ccggcggccc
     2461 gacgggctcc caggtcccac agcacggtca tcaggccgaa ggcgatgagg aagaacagtc
     2521 ccgaccactt cgtccccgtg gctaggccaa ggcaggctcc tgcgacccaa cgccacggtc
     2581 gcagccccag cgacggaccc gtaccggcgg aacgctgtcg cggcgacatc gcggccaccc
     2641 ggtctgccag gatcgcccgg gaacggtcgc ggtcgagcag gagcgcgcag aacgccgcga
     2701 gggcccagaa catgacgatc aggtcgagca gcccggtgcg cgactggacg aagtggtgcc
     2761 cttcgaaggc caccaggaag gccgcgatcg tgcccagcag ggaggacccg aacattcgcc
     2821 gggcggctcg tccgatcatg aggatggaca cggtgccgag caggcaaacc gagaaccgcc
     2881 agccgaacga cgaggtctgg ccgaacagct gctcgccgag ggcgatgatc cactttccga
     2941 cgggcgggtg caccacgagg tcaccctcgg ttccgaacac gttgggcgtt ccagcggtga
     3001 acagcgcgtc gggtttcttg agcgagtctg ggacccgcat ctcgacaccg tagtcgagca
     3061 tggagacacc ctgcttgacg tagtacgtct cgtcaaagac cagctgatgg ggccgtccca
     3121 gcgcccagaa ccgcatcagg ccgcccacga cggcgaagaa gatcggcccc agccagcccc
     3181 acagggtgtc ggtgggccgg aatccgagca ggcgggagcg cagctgctcg gcgcgggtca
     3241 tgcgcgccat cgtatgcaac gaagcctgac aggatgacac ggtgatcccc tcagccggcg
     3301 tgctcgttct cgcggcgacg cctatcggtg atccccggga cgccgcgcca cgcctagcgc
     3361 acgagatcgc gaccgccgat gtggtggccg ccgaggacac ccgtctcctg cgtcgcctct
     3421 gcgcggatct gggggtgggt ccacgcggct cggtcgtgag ctaccacgag cacaacgagg
     3481 cgtcccgcac acccgtgctc gtgcagcggc tggtcgccgg cgagcgggtc ctcgtggtca
     3541 cggacgccgg gatgccgtcg gtctcggacc ccgggtaccg actggtcacg gccgcggtcg
     3601 aagcgggcgt gcaggtgacg tgtgtgccgg gacccagtgc agtcctgatg gctctcgcag
     3661 tctcgggtct gcccgtcgac cgcttctgct tcgaaggatt cctgccacgc aaggccggtg
     3721 agcggtcgcg catgctcgcc gcactcgccg acgagcggcg gaccatggtg ttcttcgagg
     3781 cgccacaccg gctggacgtc acgttggccg cgatggccac cgcgttcggc gcttcccggc
     3841 gagcagcggt atgccgtgag ctcaccaaga cctacgagga ggttcggcgg gggggcctgt
     3901 ccgagctcgc cctctgggcc gccgacggag tccgtggcga gatcacggtc gtggtcgaag
     3961 gcgccacggt cgtcgccgcc agcctcgagg atgccgttcc catggtccgg gaacgcgtgg
     4021 ccgccggaga gcgcctcaag gacgtctgtg ccgacgtggc cgctacgacc ggcctgtcca
     4081 agaaggccct ctacgacgca gcgctggtag ccaaggcggt cagctgagcc acgacagatg
     4141 gctcctgagc agggtgtacc cgacgaacgc gacgacgtcg agcagggtgt gggcgaccac
     4201 caggggcccc actcggcgcg tgcgcagata gacccagccg aacagcaggc ccatgaccag
     4261 gttgccgagg aagccgccga acccctggta caggtggtac gagccccgga tggcggcgga
     4321 tgccagcacc accgttggaa cggaccagcc ggcccgacgc catcgcgtga agagatagcc
     4381 gaccatgacg acctcttcga ggacggcgtt ctgcacggcg gacagcacca gcaccgggac
     4441 ggcccaccag gtgtcggtga ggttggcggc ggcaatggtg gtgttgaggc ccaaagcccg
     4501 cgccgcggca tacagcccca ggccgggtag gcccaccgcg gcggcgaggg ccaccccgcg
     4561 cagcaggtcc cctgcggggt tgcgcaggtc gaagccgatg acgtggcggg cgtcgggacg
     4621 gtcgcgagtg agcagatgca gggccagggc gactggcacc aaggcgatcg cgatgccgac
     4681 cagctggtag gcgaggtcca gccacgggcg atccggggtc accgagttgt tcatccccgt
     4741 cgtctggtgg ttcagggcga cgtgctgggt gagcttgttg accagggcga gcagagacca
     4801 gacggcggac gcgcccaggc tgacgccgag cacgagaccg gtctccgtga ggagctgtcg
     4861 acgcgtggct gctgcgggga tgacagcggt gctcacgcga ccgccgcgcg ggggtgggcg
     4921 ttcggacccg gggccgcaca caggcccatg ccggtcagag cggcgaacat cggcgacctc
     4981 catcggtgtg gtgcacctct cggggcatgt ctacaagacg aagggccgag gtgcgcggtt
     5041 ccggggcttt ggtgaatcgg ggccaactgg ccgcctttcc tggaatctgg ggttggcggg
     5101 cgccgaaatg gggccaactg gccgcgtttc cagaagccac gctcgactgt gggtgcgatg
     5161 ggtgcgatgg gtccgatggg tccgatgggt cacgcgaggt cgtcggggcc ggagaagtag
     5221 cgacgccact caccgcgaag ccgacggggc accgggatgc cgcgttcccg catggcagcg
     5281 acgatccggt ccagcacggc gctcgccgat ccgtagaact gagtcgacgt gacaacgacg
     5341 aaccgccagc cgtcggcctc gacgtcttca cgccggatca cgtcaccttc ccagcgtgac
     5401 cgaacttcaa cgtgcggacg cccgtcgaac tcgacagcca acagctggtc cggataggac
     5461 aggtcgagac ggtacttgac ccgcccatcc tcctcgcaga gctcgaagtt cactcgcggc
     5521 tcgcgcagac cggccaggac cacgagcatt cgcagtcggc tctccatcgg agagtccacc
     5581 ctctcccgaa ccagggaggc cgcgcgccgg gcgagggccg cgtgcctcgc cacagacccc
     5641 tcgcacgccg ccttcagctt cgcggtggtg gtggccttcg ccttgacgag cgaatcgccg
     5701 agggtgacga gctgaaccaa gtcgcagtaa tgggctaggt cgatgaacgt ctgctcgggc
     5761 gaggtgatcg gaagtccccg tcgagtgttt ggcacgggca gacgggccac gcggtgggag
     5821 cggatcccgc gcgtcttctg ccgattcccc atcggcatgg acacgtgcac ctcgccggag
     5881 tcgggtgcga tgccacccca gagactcgct gccgaatggt ggctgacgat cgatccaggt
     5941 ggagccacca tcagcgcagc gagggcgcgc accaccagcg tcgctttgac ggagctggag
     6001 atgtagacgc cccagaacag ctgttgatag ccggttccgg acaggtcggc gtcgctcaga
     6061 cccgccttga gggcacgctt tcgggtgaag ggtgccttcg ggttgaaagg caactcgctc
     6121 atgcgttggc gcgtcaccac aacagcgtgg ctggtgagtc atccggggct gtcgcgtcat
     6181 ccacaggctg ccaaaatcgg ggccacttgg ccctgattcg cggatcaggc gggaggaccg
     6241 cctcaaaaac gggacctggt ggccccgttt cgcaggctgg gtgcgcgcag cggtccgaaa
     6301 gaggaccaac tggccccgat tccgtgagcg gtcggcgggc gttcgatgag gagagcccgc
     6361 cccctaggat tcaacccgtg acctctgtgc tctccgccgt cgcctggccg tacgccaacg
     6421 gcccgcggca cctcggccac gtggccgggt tcgccgtgcc ctccgacgtg ttcagccggt
     6481 acatgcggat ggcgggccac aacgtcctca tggtcagcgg cacggacgag cacggcaccc
     6541 cgatcctcgt tcaggccgac aaggagggcg tgagcgcgcg ggacctcgcc gacaagaaca
     6601 accgcatcat cgtcgaggac ctggcccagc tcggctgctc gtacgacctg ttcacccgca
     6661 ccacgacgcc caaccactac gccgtcgcgc aggccctgtt cacccaggtc tggaagaacg
     6721 gctacatgat cgagcagacg acccgcggcg cgatctcgcc ctcgacgggt cgcacgttgc
     6781 cggaccgcta catcgagggc acctgtccca tctgcgggta cgcggaggcg cgcggcgacc
     6841 agtgcgacaa ctgcggcaac cagctcgacc ccaccgatct catcaacccg aggtcgaagg
     6901 tcaacggcga gatcccggag ttcatcgaga cccagcactt cttcctcgac ctgcccgccc
     6961 ttgcggacgc gctgcgcgag tggctggagg gccgggaggc gtcgggaacc tggcgtccca
     7021 acgtcatcaa gttctccatg aacatcctgg acgacatccg tccgcgggcg atgacgcgtg
     7081 acatcgactg gggcatcccg gttccgctcg acggttggcg cgaccagcct gccaagcggc
     7141 tctacgtctg gttcgacgcg gtcgtcggtt acctgtccgc ctcggtggag tgggctcgcc
     7201 gcatcggcga gcccgagcgc tggcgcgact ggtggaacga ccccgatgcg ttgtcctact
     7261 acttcatggg caaggacaac atcaccttcc actcccagat ctggccggcc gagctactcg
     7321 ggtatgccgg gaagggcagc cgtgggggag agccaggcga gttcggggtg ctcaacctgc
     7381 cgaccgaggt ggtctccagc gagtacctca ccatggagag caagcagttc tcgtcctcgc
     7441 gcggtcacgt gatctatgtc cgtgacgtgc tctcgcggta ccagcccgac gccttgcgct
     7501 acttcctgtg cgcggctgcc ccggagagcc aggacagcga cttcacctgg cgcgagttcg
     7561 tcacccgcac caacaccgag ctggtggcgg gctggggcaa cctggtgaac cgcaccgcga
     7621 cgatgatctc caagaacttc ggtgagatcc cgcccgccgg tgagctgctg gctcaggaca
     7681 aggcgcttct cgactccatc aaccaagggt tcgacacggt cggtggcctg atcgggcggc
     7741 accggctgcg tcaagccgtc gccgaagcga tgaaggtcgt cggcgaggcc aacaagtacg
     7801 tcacggatga ggcgccgttc aagctcaagg gcgaggacca gcgcgaacgg ctcgggacgg
     7861 tgctgcacgt gctcgcccag gccgtgctgg atctcaacac catgctggcg ccgttcctgc
     7921 cgcactcctc caacgccgtg cacaccactt tcggtggcga cggtgagttc atgccgatgc
     7981 cggtcatcga ggaggtcgac gatctcgacg gcggccactc gtacccgatc atcacggggc
     8041 agtactcttc gacgccgcgc tgggagtcgc ggccggtgcg agtcggcgcg cccgtgggca
     8101 tgcccacccc catcttcacg aagctcgacg agtcggtggt cgaggaagag ctcaagcggc
     8161 tcggtggcaa gggccccgag ggccccgagg accccgcgga ccccgaaggc accgaaggtg
     8221 ccgaaggtgc cgatggcgac gcctgacccg gcgggcggct ccggtcacgg acggacccca
     8281 gaagcacccg cgcccctgcc gatcgccgtg gtcgacaacc acacgcatct cgacatcgcc
     8341 cgcgacggcg aaccggccgt cgacgtcgcc tcggcggtgg cccaggccaa ggccgtcggc
     8401 gtcgaccgct tggtccagat cgggtgcgac ctgccggggg ctcgcttcac cgtcgagatg
     8461 atcgacctgc accccgcgat gctgggcggg gtcgcgctcc acccgaacga agcgccgagg
     8521 ctcgccgccg agggggggct ggacgcggca tacgcggaaa tcgaggagct ggcggcgcac
     8581 cccagggtga gggtgatcgg cgagacgggc ctggactact tccgcaccgg gcccgacgga
     8641 gtcggggtgc aacaggattc cttccgctgg cacatcgacc tggccaagcg cacgggcaag
     8701 gccttgcaga tccacgaccg ggacgcccat gaggacgtgc tgcgcatcct cgaggaggaa
     8761 ggcgcaccgg agcggaccgt gctgcactgc ttctccgggg acgtgagcat ggcccgaacc
     8821 tgcgccgacc gcggctacta cctgtcgttc gcaggcaccg tgaccttcaa gaacgcgcgc
     8881 gggctgcggg acgccctctc ggtgaccccg ctcgagcggg tcctggtcga gacggacgcg
     8941 ccgtatctca ctccggcacc gtggcgaggg gcgaccaact cgccgtacct cgtgccgctc
     9001 accgtgcgcg cgatggccgg gacgctcgga gtcgcggtgc cgacgctgtg ccaggcgatc
     9061 agcgccaact ccgaggcggt ctacggaccc tggtgaaggc acccgcgggg agcggggaca
     9121 gggcaaggaa agagtacgaa agagcacgga aagagcacgg aaagcccgga cataagccgc
     9181 gcagggcgac acaccggact tggccatctc gtgaaccttc cgttatcgaa atttgacctt
     9241 tcgcagaagg cccgtcatgg tggatgactg ttggccgggg tcggaccctg ggcgacgtga
     9301 gcgggggcgc tcagaaaccg ccacggtggc ggcctctgga ccgcccccct ttccttttgc
     9361 cggacagtcc ttttgcgggg accccggtgc aggaacacga cgcccctccg ctgcccgggg
     9421 agtacgaact ctggagcatt gtgatcaccc gtcccgttcg gcgcatcgcg caagctgcgg
     9481 ttgtgacgac ccttgtcgcc ggcgcccttg gcgtcgctta cctcgacaag tccgtcaccc
     9541 tctccgtcga tggcaaggtc tcgacggtcc acgccttcgg cagcaccgtc ggcgatgtcc
     9601 tcagtaccca gaacatcacc ccgggcgcac acgacatcgt cgcccccggc acggggacct
     9661 cggtctccga tggcgagaag atcgtggtcc gctacggccg caagctgacg gtgaccatcg
     9721 acggccagac ccgcgagtac tggacgacgg ccaccacggt cgccgcagcc ctcgcagacc
     9781 tcggcatccg cgccgactcc gccaagctgt cggcgtcgcg ttccgagccg ctgggtcgcc
     9841 agggcctcac cctttccctc acgaccccca agaacgtggt cgtgcgagtg gatggcaaga
     9901 ccctctccga ggcctcgacc ggtgcgaccg tcgctgacgt gctcggcgag ctgaacgtca
     9961 ctcccggccc gaccgaccgg gtgcagcccg gtctgagcac cccggtgacc gatggtctgc
    10021 ggatcgcggt cctgcgggtg agcgccaccc aggtcaagga gaccgtggcc attccggccc
    10081 ccgtgaccac ccggtccgac ccgtcgctcc cggccggaca gtcctcgacc atccaggctg
    10141 gctccgacgg cgccaaggtc gtgacctaca cggtcaccac ggtcgacggc aagctcgaga
    10201 ccaagcagct cgtgggcagc caggtcaccc agcagcccgt cacccggatc gtcgcccagg
    10261 gcaccaagcc cgccccggcc ccggcccccg ctgccccggc cccgtcagca ggcaacacct
    10321 ccggcgctgg cctcaatacc tccaactcag ccatgtggga ccgcatcgcc cagtgcgagt
    10381 ccggtggcaa ctggcacatc aacacgggta acggctacta cggcggcctg cagttcgact
    10441 acaactcctg gctggccaac ggtggcgctg acttcgcccc gcgtgccgac caggcttccc
    10501 gtgagcagca gatcacggtg gcgaaccgct actacgccaa gtccggcctc gggccgtgga
    10561 gctgcgccca cgcagcctga tccacgaccg acgccgccga cctcggcagc ctgcagcgcc
    10621 ccggaccagc tggtccgggg cgctgccgtc tgtcccctag agtcggcgcc atggtcgagc
    10681 aggaggcgag cggatacctg ggcgccgcac agatccgtca gatcgccgca gggctgggga
    10741 tgcgaccgac caagcagtgg ggccagaact tcgtcgtcga cgcgaacacc gtcaagcgca
    10801 tcgtccgcct ggccagggtc acccacgacg acagcgtggt ggaggtcggc ccggggctgg
    10861 gctcgttgac gctggccctg ctcccggtcg tcggacacgt caccgccgtc gaggtcgacc
    10921 ccacccttgc aggggccctg ccaggcacgg tcgcacggct cgcgccggca tacgccgatc
    10981 ggctcaccct tctgaacgcg gacgcgatgc aggtccgcga gctgcccgac ccccagccga
    11041 cggccctggt cgccaacctg ccttacaacg tctcggtgcc ggtggtgctc tcgttcctgg
    11101 aggcgttccc aaccctggag cgggtgctcg tcatggtcca gctcgaggtg gccgagcggt
    11161 tggctgcgcc tcccggatcc aaggcctatg gcgtgccgag cgccaaagcc gcgtggtatg
    11221 ccgcggtgcg gctggcaggg actgtccccc ggagcgtgtt ctggccggta cccaacgtcg
    11281 actccggact ggtgttcctc gaacgtcggg cggtgccgac cacgtcggcc acccgccagg
    11341 agacctttgc ctgcatcgac gccgcgttcg cgcagcgacg taagaccctg cgggcggcgc
    11401 tcgcggggtg ggccggatcg gccccacggg ccgaagagtg ccttcgagag gccgggatcg
    11461 accccaggac ccgcggcgag cagctcggag tggctgagtt cgctgctatt gccgcagcgc
    11521 tggcctcgct gcagcctggg tggcgctgac cgcgtgaagt ggctgcaggg cgccagccca
    11581 ttagggtggc gctcatgacc tcagtcgcgc cgacaccggc ctcggtgacg gctcgcgtgc
    11641 ctgccaaggt caacctcgag ctcctcgtcg gtgctcctcg cgctgacggc ttccatccgt
    11701 tgtcgacggt gttccacgcc gtgcgtctgt atgacgagat cactgtgacc accgcggcga
    11761 gctggggact gaccgtgtcc ggcccgcagg cgttgggcgt gccggtcgat gggaacaacc
    11821 tcgcgacgaa ggcggcgcgc cgactcgcgg aggtgggcca ggtcgaagag gccgtgcaca
    11881 tcagcatccg caaggagatc ccggtcgcgg gtggcatggc aggcggatcc gccgacgccg
    11941 cggccaccct cgtcgcctgt gacgccctgt gggggctctc gctgccccgc ccgcggctgg
    12001 agcagctcgc ggcggagctc gggagtgacg ttcccttcct gctcgccggt ggcacgtcga
    12061 tgggctcggg tcggggcgag atcctgactc cggtgctggc ccgtggcacc taccactggg
    12121 tcttcgcgtt gagtgagggt ggcctgtcga ccccgcaggt gtatgccgag tgcgaccgac
    12181 tccgcgaggg tcgcccggtg ccggagccgg cgcccagtcc gcagatgatg caggccctgc
    12241 ggtccggcga tgcgcgcgcc ctgggtgcgg cactgacgaa cgacctccag gctgcggcga
    12301 tctcgctgat gcctgcgctg ggcgacgtgc tcgacgcggg actggagttc ggcgcgctcg
    12361 gcgggatcgt gtccggctca ggtccgaccg tggcgtttct cgccgaggac cacgagtcgg
    12421 cgctcgacct tgcggtctcg ttgacggcct ccggggctgt ccaggacgtc cgccgtgcca
    12481 ccggcccggc tcatggcgcg catctcgtcg gcgccccacg ggcgtgagcg gatactgatg
    12541 gccaacctca tctcggtcga acgcgcctcc ctcgcgctgg gcaccgctca ggtcctcgac
    12601 gaggtctccc tcggtgtcct cggcggcgac cggatcggca tcgtgggccg caacggcggc
    12661 ggcaagacga ccctgctgcg ggtgctggcg gccgatcgtg aggtcgactc cggccgggtc
    12721 acacgggtcg gcggtgcgca ggtcggagtc ttggcgcagg aggacgagct ggaccccgac
    12781 gacacggtgc gggccgtcgt tctggacggc ctcgacgaac acgtgtgggc cggcgatgcg
    12841 cgcatccgtg atgtcatggc cggcttgctg ggcgggctcg aagcggagtc catgggcggc
    12901 ctggacgcca cggtgggtcc cctgtccggt ggcgagcggc gacggctggc cttggctcgg
    12961 ctgctggttg ccgacccgac cgtgctcatg ctggacgagc cgaccaacca cctcgacgtc
    13021 gagggggtcg cctggctcgc cgagcatctc gtgcagcacc gcgctcgccc ggacaacgcc
    13081 ctcgtcgcga tcacccacga ccgctggttc ctcgatgcgg tggcgaccca gacctgggag
    13141 gtcgtggacg gaaccgtgag ctcgttcgag ggcggctacg cggcatacgt gctcgccaag
    13201 gcggagcgcg aacggatggc gacggtcacc gccgaacgcc gcgacaacct gctgcgcaag
    13261 gagctcgcgt ggcttcgccg tggtgctccg gcgcgcacgt cgaagccgaa gttccgcatc
    13321 gaggcggcga acaccttgat cgccgacgag ccgccaccac gcgacgacgt cgagctcacc
    13381 cggttcgcga cgaccaggct cggcaaggat gtcgtggacc tcatcgacgc ctcggtggtg
    13441 ctgggcgacc ggccgttgct cgaccgggtc acatggcggc tggctcccgg cgagcgggtc
    13501 gggatcgtcg gcgtcaacgg ttcgggaaag tcgaccttgc tcaggaccat cgctggtcag
    13561 ctgtcgctcg cctccggcaa gcgacggcag ggcgtcacgg tgcggctggc ctacctgacc
    13621 caggaggtgc gcgagctcga acgcttcggc gactggcgcg tcatcgaggc catcgaggac
    13681 gtccgctcct cgatccagct gggccgcaag gagatcagcg ccgcgcagct cgcccagcgc
    13741 ctggggttca ccggtggacg gcagcagact cgggtgcgcg atctgtccgg gggcgaacgg
    13801 cgacggctcc agctgacccg cctgctgatg gacgagccca acgtgctgct gctcgacgag
    13861 ccgaccaacg acctcgacat cgagacgctc acgtcgctgg aggacctgct ggacgggtgg
    13921 gccgggacgc tgttggtggt gtcgcacgac aggtatctgc tcgagcgggt ctgcgacacc
    13981 caggtggcgt tgatgggcga tggcaagctg cgagctctgc ccggtggggt cgagcagtac
    14041 ctgacgctgc ttcacgcaga ggtccacgca gtgcaggccg ggggtggcac gtctcagacg
    14101 ggtccggcat cgccggccgc tgctgccctc gcggagtcgg tcgtcggtcc gagtccggct
    14161 gagctgcgcg aggcgcgcaa ggacctggcc cgcatcgaga agcagctggc acgcctggcg
    14221 gagcgcgagg atcggatcca cgcggccatg gccgaggcgg ccgccgacca cgcccgcgcg
    14281 ctggagctca acggacagct ccgtgaggtc gtggacgagc gcgagacgtt
//
LOCUS       DASYFY010000632         2993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1569663, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000632 DASYFY010000000
VERSION     DASYFY010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1569663"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..764
                     /gene="thrC"
                     /locus_tag="VGN19_12895"
     CDS             <1..764
                     /gene="thrC"
                     /locus_tag="VGN19_12895"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEV7196829.1"
                     /translation="PDGKIALGKLSQAIAHGATLLQVEGNFDDCLTLARKLAESYPVD
                     LVNSVNPARIEGQKTAAFEVVDALGDAPDIHCLPVGNAGNITAYWQGYREYHRSSDNP
                     GPATKLPAMWGFQAAGAAPIVLGHPVDDPDTIATAIRIGNPASWRQAEAARDQSGGRI
                     DSVTDEQILAAHRILSAREGIFVEPGSAASVAGLLQAADAGQVPAGATIVCTVTGHGL
                     KDPQWALRNPDGSDVTPTRVPVDAFTAARALGLQD"
     gene            764..1699
                     /gene="thrB"
                     /locus_tag="VGN19_12900"
     CDS             764..1699
                     /gene="thrB"
                     /locus_tag="VGN19_12900"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEV7196830.1"
                     /translation="MVDSLAPGSLVRVRVPASSANLGPGFDSIGLALGLWDTCTVTVL
                     EKPGLVIEVEGEGAAEVPRDASHLVFRTMLRAWEELAVQAPAGLRVACVNEVPHGRGL
                     GSSATAIVTGIVAAQGLHDVCRGAGGQPDLAFANSLAALLEGHPDNSSASVYGGLTLS
                     WSDLDGATTTLRLQPHPDVIPVVIVPSEQLSTAKARSVLPTHVRHGDAAMNSARAALL
                     VQALTADPAYLLPATREWLHQEARRDSFAPSMSLVDELRAAGHAAVISGAGPSVLVLA
                     TDRANEVARCVGDHWRVLRPGIPAKGAQVERGSVG"
     gene            1954..>2993
                     /locus_tag="VGN19_12905"
     CDS             1954..>2993
                     /locus_tag="VGN19_12905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006594310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rho termination factor N-terminal
                     domain-containing protein"
                     /protein_id="HEV7196831.1"
                     /translation="MTDTTTLDAAGSQDAVEKPRRSGALTTMKVAELQGLAASMGISG
                     TAKMRKGDLVTAIKARQSGASVSGAPATSAERQAERPAERQERQVERPAERRESRDGG
                     QREQQQSRDGGQREQQNRDGGQREQQNRDGGQREQQSRDGGQRDQQQNRGGQNRGDQN
                     RGDQNRDADQNRGDQNRDQNRGDQNRDLNNDDDGDGRGGRRRNRNRSRSRDKRPGRPG
                     GRSDFGGDYENEPQVADDDVLIPVAGILDVLENYAFVRTSGYLPGANDVYVPLGLVKK
                     NGMRKGDAVTGAVRAQRDDQQQQVQRQKFNALVRLDTINGMAPDEARKRVEFGKLTPL
                     YPQQRLRLETEP"
BASE COUNT          493 a         1060 c         1034 g          406 t
ORIGIN      
        1 tgcccgacgg caagatcgct ctgggcaagc tcagccaggc gattgcccat ggtgccaccc
       61 tgcttcaggt cgagggcaac ttcgacgact gcctcaccct ggcccgcaag ctggccgagt
      121 catacccggt cgacctcgtg aactcggtca acccggcccg gatcgagggg cagaagacgg
      181 cggccttcga ggtcgtcgac gcgcttggcg atgcgccgga catccactgc ctcccggtgg
      241 gcaacgcagg caacatcacg gcctactggc aggggtatcg cgagtaccac cgcagctccg
      301 acaacccggg ccccgcgacc aagctccctg cgatgtgggg ctttcaggcc gcaggggccg
      361 cccccatcgt gctgggtcat ccggtcgacg accccgacac catcgccacc gccatccgca
      421 tcgggaaccc cgcctcgtgg cgacaggccg aagccgcgcg cgaccagtca ggtggccgaa
      481 tcgactccgt gacggacgag cagatcctcg cggcccaccg catcctgtcc gcacgcgagg
      541 ggatcttcgt cgagccgggt tcggcggcct cggtggccgg tctcctccag gccgcggacg
      601 cgggtcaggt acctgcgggg gccaccatcg tgtgcaccgt caccggtcac gggctcaagg
      661 acccgcagtg ggcgctgcgg aatccagacg ggtcagacgt cacccccacg cgcgtccccg
      721 tcgacgcctt cacggccgcg cgggcgttgg ggcttcagga ctgatggtgg acagcctggc
      781 ccccgggagc ttggtccggg tccgggtgcc cgccagcagc gccaacctcg gcccggggtt
      841 cgactccatc gggctggcgc tgggactgtg ggacacctgc accgtgaccg ttctggagaa
      901 gccgggactg gtcatcgagg tcgagggcga gggcgcggcc gaggtccctc gtgacgcctc
      961 gcacctggtg ttccgcacca tgctgcgggc gtgggaggag ctcgccgtcc aggcgccggc
     1021 gggtctgcgg gtggcctgtg tcaacgaggt gccgcacggt cgagggctcg gctcctccgc
     1081 tacggcgatc gtcaccggaa tcgttgcggc gcaaggactt catgacgtat gccgcggagc
     1141 cggcggccag cccgacctcg cttttgccaa ctccttggcg gcgctgctcg agggtcaccc
     1201 ggacaactcc tcggccagtg tctacggcgg gctgaccctg tcatggtcgg acctcgacgg
     1261 ggcaaccacc acgttgcggt tgcagccgca tccggacgtg atccccgtcg tcatcgtccc
     1321 gtccgaacag ctctcgaccg cgaaggccag atcggttctc ccgacccatg tgcggcatgg
     1381 ggacgcggcg atgaactccg ctcgagcggc cctgctcgtc caggcgctca ctgccgaccc
     1441 ggcatacctg ctgccggcca ccagggagtg gctgcaccag gaggcccggc gcgactcctt
     1501 cgcaccctcg atgtcgctgg tcgacgagct gcgcgcggcg ggacacgcgg cagtgatctc
     1561 cggagccggc ccctcggttc tggtcctggc cacggaccgg gcaaacgagg tggcgcggtg
     1621 cgttggcgac cactggcgcg tgctgcgtcc gggcattccg gcgaaggggg cacaggtcga
     1681 acgggggagc gttggctgac agagctgggg agtcctagtt gtggcgtctt ggactattgc
     1741 ctgtccgtct ggtgttacat tgtgtgcgca cctcccaggc gatgccgcct cttgagcatc
     1801 caccggtgac gtgcacccac ctcatgacgg cggccctgat gctgcctttg gcctcaccgc
     1861 gccgcatgtg gttcccatcg gtcagcatcg gctggcccaa gcaccggctc tggatctgaa
     1921 cccggagccg catacgaggg ggaaggatcc ttcgtgacag acaccaccac tctcgacgcc
     1981 gctggttccc aggacgccgt agagaagccg cgccgctccg gcgccctgac gaccatgaag
     2041 gtggcggagc ttcagggcct cgcggccagc atgggcatct cgggcaccgc gaagatgcgc
     2101 aagggcgacc tggtcaccgc gatcaaagcc cgccagtccg gcgcatcggt cagcggcgcc
     2161 ccggcgacct cggccgagcg gcaggcagag cgccccgccg agcggcagga gcgtcaggta
     2221 gagcgccccg ccgagcgccg ggagtctcgc gacggggggc agcgcgagca gcagcagagc
     2281 cgtgacgggg ggcagcgcga gcagcagaac cgtgacgggg ggcagcgcga gcagcagaac
     2341 cgtgacgggg gtcagcgcga gcagcagagc cgtgacgggg gtcagcgcga ccagcagcag
     2401 aaccgcggtg gccagaaccg cggcgaccag aaccgtggcg accagaaccg cgacgcagac
     2461 cagaaccgcg gcgaccagaa ccgcgaccag aaccgtggcg accagaaccg cgacctgaac
     2521 aacgacgacg acggcgacgg ccgcggtggt cggcgccgca accgcaaccg cagccgtagc
     2581 cgcgacaagc gccccggtcg ccccggcggc cggagtgact tcggcggcga ctacgagaac
     2641 gagccccagg ttgccgacga cgacgtgctg atccccgtgg ccgggatcct ggacgtcctc
     2701 gagaactacg ccttcgtccg cacctcgggc tacctgcctg gcgccaacga cgtctacgtc
     2761 ccgctcggcc tggtcaagaa gaacggcatg cgcaagggag acgccgtcac cggagccgtc
     2821 cgcgcccagc gtgacgacca gcagcagcag gtccagcgcc agaagttcaa tgcactggtc
     2881 cgcctggaca cgatcaacgg catggcccct gacgaggccc gcaagcgagt cgagttcggc
     2941 aagctcaccc cgctgtaccc gcagcagcgg ctgcgtctcg agaccgagcc gaa
//
LOCUS       DASYFY010000633         1887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1622976, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000633 DASYFY010000000
VERSION     DASYFY010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1622976"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            719..847
                     /locus_tag="VGN19_12910"
     CDS             719..847
                     /locus_tag="VGN19_12910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196832.1"
                     /translation="MRTDSPVTTVWVERRSDNLVGATDTAGVPGPVTVGLGSAGTP"
     gene            complement(1331..1495)
                     /locus_tag="VGN19_12915"
     CDS             complement(1331..1495)
                     /locus_tag="VGN19_12915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196833.1"
                     /translation="MPHNREGLAAATLDARAHPNSGLDRRSGRPHPALHAQVIAAELY
                     GRDYHVPVEF"
     gene            1658..>1887
                     /locus_tag="VGN19_12920"
     CDS             1658..>1887
                     /locus_tag="VGN19_12920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196834.1"
                     /translation="MRERLSRTRLRCSSAALSLLARALVAVSERTTGLTGASLALVAR
                     VVWVPRCCRGVAAASAGGHQPNTSRTASQDTAL"
BASE COUNT          314 a          657 c          665 g          251 t
ORIGIN      
        1 gaggtccgcc ggcgttcatc cccacgaagc cggccggcac gacacgcggg ggcggggcac
       61 cgcccctgcc tgacgtgact gcctgagcac tcgacgcgaa gccgaacgcc gcgaccgcga
      121 ccgcaagccc gacccgcgtc cggacaggca tcatcttggg atcgtgacct ggacagcgat
      181 cgcggtcgtg cgttgaccag cgaccgtgag cgcgatcgcc tccgtcgcaa tcagaggggt
      241 ggctgtggcc aagcgggtgc gccccgctga gcgcagcgca accgcgacta cgcgtgtggt
      301 gccggcgcgc aggctgaacg tcctctcacc cacgacaagc tggcgacgct tgccacgtcc
      361 cggcgcgccc ccgttggagc gccgcaccag caaggcgacc gtgacgcgac agccaccgga
      421 gtggggcgca cagctcagct tcgtcaacac cccacctgcg cgtacccgcg ggggccgagc
      481 gagcatgacg ctccagtgca ccttctccgt caatgcggcc gagcgtgaac gagaaagact
      541 cgatgtgccc gagtacacgg cgccaatctt gaacgcacca gctcggacga atcgcgtggt
      601 gcataccgcc tgacgcgctg tgcggttgac cggcacagcc gcgcacccac ggatgctccg
      661 gccgtccgcc aggaacgcca cgctcccgcc atcagggatt gggtcgacga tggcgaccat
      721 gcgcaccgac tcgccggtca ccacggtctg ggtcgagaga cgcagcgaca acctcgtcgg
      781 cgcaaccgac accgctgggg tgcctggccc ggtcaccgtg ggactcggca gcgctggcac
      841 gccctgagga cctgaccccg gaatcggcgg tccggctgga gggttggttc ggcgaggtgg
      901 cgtcgcgggc gtccccggta acacccgtgg cgcctgagga ggcgggaagt agtcggctat
      961 cgaagacacg tcgccgggta ccgagcccag gacccgtacg accggaggga cgggatgggc
     1021 cacccggcac gacctgggca gggcccgctg cgggatcgca caggcgaagt tgaccacgct
     1081 ccggcacgcg agacctcggg ggttggcacc tctcgggaac gtgcagaaag gcgagtagcc
     1141 cgccacgagg ccgacgttac agctgcctcc ggactggtcg gcgaacgggc tgcagagcac
     1201 aaagcgagcg catgccgtag ccgtcgcacc gcagcgaagc aggaacccga cggacgattg
     1261 gaccgccgcg caggtcggga cgacgcccgt ctcgcagata cgcgtgctct cggtggcccc
     1321 gccctccggg ttagaactcc accggaacgt ggtagtcgcg accgtacagc tcagcagcga
     1381 tgacctgagc gtgcagagcc gggtgcggac gaccgctccg acggtcgaga cccgagttcg
     1441 ggtgagcgcg agcgtcgagc gtggctgcgg caaggccctc acggttgtgc ggcacagcat
     1501 ctcgcgtgac gcgttgaggc accggtgggc atgcgccctg aacgtggacg cggtccggca
     1561 gatctggttg gtaaagccgc tgtaacgaat gcaccggttg ggccccggtc cctgactccg
     1621 ccgtccccag ctgcgagtcc ttcgccccac cgtatgggtg cgtgaacgcc tgtcgaggac
     1681 acggctgcgc tgcagttcag cggcgctgag cttgctcgcg cgcgcgctcg tggccgtctc
     1741 ggagcggacg actggactga ccggtgcctc cttggctctg gtcgcgcgcg tcgtctgggt
     1801 gccgcggtgc tgccgtggtg tcgccgccgc gagcgcaggc gggcaccaac cgaacacgag
     1861 caggaccgcg agccaggaca ccgccct
//
LOCUS       DASYFY010000634         5472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1622987, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000634 DASYFY010000000
VERSION     DASYFY010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5472
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1622987"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..601
                     /locus_tag="VGN19_12925"
     CDS             <1..601
                     /locus_tag="VGN19_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEV7196835.1"
                     /translation="TEQILSESVDGMTISTPIEALTDSRDAIIAVAMDGQPLPAQHGF
                     PVRMVTPGLYGYVGATKWLTRFTATTYAAQQAYWTQRGWAQKANVKTQARIDTPAGLA
                     TYPHGRIAIGGVAWAQGRGIEGVEVQVDQGPWQKATLGPDGGTDYWRQWYLAWDATPG
                     RHQLTVRATDGTGATQTNAQAAPFPDGAAGYHSIVVIIS"
     gene            745..1380
                     /locus_tag="VGN19_12930"
     CDS             745..1380
                     /locus_tag="VGN19_12930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012630898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEV7196836.1"
                     /translation="MRLARRSTIAALSLALPLGLAACGSTGSSTAASSSSSSSSSSSM
                     PSTSTTTDAMTATPFGAGCSAVPTSGKGSFSGMATDPVATAASNNPALSDLVGAVKAA
                     GLVGTLNSAKDITVFAPANSAFAALPKATLNAAMKDPKGLLTKVLTNHVVAGRLTPAM
                     LAGSHKTLAGTTITVTGSGESFKVGTANVVCGNVTTSNATVYIIDSVLLPK"
     gene            1430..2035
                     /gene="sigK"
                     /locus_tag="VGN19_12935"
     CDS             1430..2035
                     /gene="sigK"
                     /locus_tag="VGN19_12935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ECF RNA polymerase sigma factor SigK"
                     /protein_id="HEV7196837.1"
                     /translation="MPATPPGSPQSWGTAGAAAGQTDLVELLRDSACGNETAFAQLYD
                     AVAARVHGLVLRVVRDHAQSEEVTQEVFLDIWRTSARFDPALGSPIGWILTIAHRKAV
                     DRVRSAQASTNRDEAYGSRNQDRDFDITSETVERRLDAQRVRHALGSLTETQRGAVEL
                     AYFGGYTHTEVAGLLGVPLGTAKTRIRDGLIRLRDTLGVNP"
     gene            2032..2781
                     /locus_tag="VGN19_12940"
     CDS             2032..2781
                     /locus_tag="VGN19_12940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013490973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEV7196838.1"
                     /translation="MTADIHGLSGAYAVDALENGERAAFEQHLSQCPECQAEVASLRE
                     AATQLATISETMPPPSVRDAVLAGISSVRPLPPLEPPATLSQPTPSAHAVVIPLRPRR
                     RASWLMAAAAAVLVGVGGLSWHPWSHGSDNSQLTATEQVIRAGDAQRLQKMVDGARAT
                     IVRSASLGEAVLIADHMPDAPTGKDYQLWLNLPGRGMVSAGLMPRNAKQPVTVLLQGD
                     ARKALGAGITVEPAGGSTKPTTQPIALFTFS"
     gene            complement(2785..3642)
                     /locus_tag="VGN19_12945"
     CDS             complement(2785..3642)
                     /locus_tag="VGN19_12945"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEV7196839.1"
                     /translation="MRFGIAILPEYRWSDAAPRWRRAEELGFDHAWTYDHLVWAGLPD
                     SPWFGALPTLTAAAMVTSRIELGTFVSSPNYRHPYLFLRDLLAVDDISGGRLICGLGT
                     GGDLDSGILGDDLALKERVDRFHEFVEVLDRLFREDHVDHSGAFYTTVDARTLPLAVP
                     RPPFVIAANGPRALRLAAAYGQGWVTFGRGGDSLEEWWTGVEELAARLDEAEAATGRN
                     GPLRRYLSMDGSPRFSLESADLFEELVGRAEAVGFTDVVTHWPRAEGVYAGNEGVLDE
                     VASRLDDWR"
     gene            3729..4775
                     /locus_tag="VGN19_12950"
     CDS             3729..4775
                     /locus_tag="VGN19_12950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018192430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEV7196840.1"
                     /translation="MKATILTAPRDIRLEDVPDPKIVQPTDALVRVTAACVCGSDLWP
                     YRGINEVTKPTRIGHEFVGIVEEVGDQVRSLRPGDFVVAPFMYSDNTCPHCQVGMQSC
                     CDHGGFWGGPDPDGLMADGGQGEFVRVPLADGTLVSTREVPDESMVPSLLSLSDVMGT
                     GWHAAVAAGVKEGDTVVVVGDGAVGLSGVLAATRMGAERVIAMSRHEPRQRIAHEFGA
                     TDIVVARGDEAVAAVAELTGGVGADAVLECVGTNESMSTAIAAARPGATVGYVGVPHG
                     IEYPVRDLFARNVGIAGGIAPARQYLPQLRDEVLAGTINPGLVFDLELPLSEVAEAYA
                     AMDERRAIKSLLRP"
     gene            4783..>5472
                     /locus_tag="VGN19_12955"
     CDS             4783..>5472
                     /locus_tag="VGN19_12955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018158008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HEV7196841.1"
                     /translation="MFELERDPHGGTTLSIDGYPQSYVSLDDPELLVFGYMQQLAAVL
                     DALPTGPLAVTHVGGAAMTLARYVQHTRPGSPQIVLEPDPRLTERVRAELPLPRGHRI
                     RVRPQPGREGVTALKDDSADVIVVDAYAGNQVPANLTTSEWFREVARVLRADGVVLMN
                     AADEPDRRHVTRVHAALAAALPFTLAIAEVDIWKRRRFGNLVLVGSRQPLPREAITRT
                     IAGLSFPSTVVH"
BASE COUNT          884 a         1992 c         1812 g          784 t
ORIGIN      
        1 cacggagcag atcctcagcg agtccgtcga cggcatgacc atctcgaccc ccatcgaggc
       61 cctcaccgac agccgggacg cgatcatcgc cgtcgccatg gacggtcagc cgctgcccgc
      121 ccagcacggg ttccccgtgc ggatggtcac ccccgggctc tatggctacg tgggtgctac
      181 caaatggctc acccgcttca ctgccaccac gtatgccgcg caacaggcct actggaccca
      241 gcgcgggtgg gcgcagaagg ccaacgtcaa gacccaggcg cgtatcgaca ccccggccgg
      301 cctggccacc tatccgcatg gtcggatcgc catcggcgga gtcgcctggg ctcaggggcg
      361 cggcatcgag ggcgtggagg tccaagtcga tcaaggccca tggcagaagg ccaccctcgg
      421 ccccgacggc ggcacggact actggcgtca gtggtacctc gcctgggatg ccacacccgg
      481 tcggcaccag ctcaccgtcc gcgccaccga cggcaccgga gcgacccaga ccaacgccca
      541 ggccgcaccg ttcccggatg gtgccgctgg ctaccactcg atcgtcgtga tcatctcctg
      601 agctcggcgg cgacctggtc gcgatcggcc agatcggctg aggtcggcaa gatcggcgag
      661 aaacgtgacc atggagggca atccaagctc ggacaggcac cgaatcactg gtgtcagaac
      721 gtcccagcca aggagctaca catcatgcga ctcgcacgcc gcagcaccat tgctgccctc
      781 tccctcgccc tgccgctggg cctcgctgcc tgcggcagca ccggctcgag caccgcggca
      841 tcctcgtcgt cgtccagcag ctcctcgagc agcatgccga gcacgagcac cacgacggac
      901 gccatgacgg ccaccccgtt cggcgccggc tgttctgcgg tgcccacgtc cgggaaggga
      961 tccttctccg gaatggcgac cgacccggta gccaccgcgg ccagcaacaa cccggccctc
     1021 agcgatctcg tcggggccgt gaaggccgcc ggtctggtcg gcaccttgaa cagcgcgaag
     1081 gacatcacgg tcttcgcccc ggcgaactcc gcgttcgccg cgctgcccaa ggccaccctg
     1141 aacgccgcga tgaaggaccc caagggcctg ctgaccaagg tgctgaccaa ccacgtcgtg
     1201 gccggtcggc tgaccccggc gatgctggct gggtcgcaca agaccctggc cggaacgacc
     1261 atcacggtga ccggctctgg tgagtcgttc aaggtcggaa ccgcgaacgt cgtctgcggc
     1321 aacgtcacga cgtccaacgc cacggtctac atcatcgaca gcgttctgct gcccaagtaa
     1381 ccgacccgag tacacagaac aaccggagtt atcagccatg atggtgctca tgccagcgac
     1441 tcccccagga tcaccgcaat cctgggggac cgctggcgcg gccgccgggc agactgacct
     1501 cgtcgaactg ctgcgggaca gcgcctgtgg caacgagacg gcgttcgccc agctgtacga
     1561 cgcggtggcc gcccgagtgc acggtctggt gctgcgcgtc gtgcgtgacc acgcccagtc
     1621 cgaggaggtg acccaagagg tgttcctcga catctggcga acgagtgccc ggttcgaccc
     1681 cgccctgggc agccccatcg gctggatcct gacgatcgct caccgcaagg ctgttgaccg
     1741 cgtcagatcc gcacaagcct cgacgaaccg cgacgaggcc tacggctccc gtaaccagga
     1801 ccgcgacttc gacatcacgt cggagaccgt ggagcgacgc ctggacgccc aacgcgttcg
     1861 gcacgcgctg ggctcgctca ccgagaccca gcgcggtgct gtcgagctgg cctacttcgg
     1921 cggctacacc cacaccgagg tcgccgggtt gctcggagtg ccgttaggca ctgcgaagac
     1981 ccgcatccga gacggcctga tccgactgcg agacacccta ggggtgaacc catgaccgcc
     2041 gacatccacg gactgtccgg cgcctatgcc gtcgacgccc tcgagaacgg cgagcgggcg
     2101 gcgttcgagc agcacctgtc ccagtgccct gagtgtcagg ccgaggtggc cagccttcgc
     2161 gaggcggcga cccagctggc cacgatcagc gagaccatgc cgcccccgtc ggtgcgcgac
     2221 gctgtcctgg ccggtatctc gagcgtgcga ccgctcccgc cgctggaacc tccggcgacg
     2281 ctgtcccagc ccactccctc agcacacgcc gtcgtgatcc ccctgcggcc ccggcgtcgg
     2341 gcgtcatggc tcatggctgc ggcggccgcc gtactcgtag gggtcggcgg cctgtcgtgg
     2401 cacccctgga gccacggctc cgacaacagc cagctcacag ccactgagca ggtgatccga
     2461 gccggcgacg cccagcgact ccagaagatg gtcgacggcg ctcgggccac gatcgtgcgc
     2521 agcgcctcgc tcggcgaagc cgtcctgatc gctgaccaca tgcccgacgc accgaccggg
     2581 aaggactacc agctctggct gaacctgccg ggtcggggca tggtgtcggc gggactgatg
     2641 cctcgcaacg ccaagcagcc cgtgacggtg ctgttgcagg gcgacgcccg gaaggcactt
     2701 ggggctggga tcacggtcga gccggccggc gggtcgacca agccgacgac ccagccgatc
     2761 gccctgttca ccttctcgta ggtctcagcg ccagtcgtcg aggcgggaag cgacctcgtc
     2821 cagcacgcct tcgttcccgg catacacacc ctcggcacgg ggccagtgcg tcaccacgtc
     2881 cgtgaagccc acggcctcgg cgcgcccgac cagctcctcg aacaggtccg cgctttccag
     2941 agagaacctg ggtgagccgt ccatcgagag atagcgccgc agtggaccgt tgcggcctgt
     3001 ggccgcctcg gcctcgtcca gccgggccgc cagctcctcg acgccggtcc accactcctc
     3061 gagtgagtca ccgccgcgtc caaacgtcac ccaaccctgt ccgtatgccg ccgcgagccg
     3121 cagcgcacgc gggccgttgg ctgcgatgac aaacggcggg cgtggcaccg caaggggcag
     3181 cgtgcgggca tcgaccgtcg tgtagaacgc gccgctgtgg tcgacgtggt cctcgcggaa
     3241 gaggcggtcg agcacttcga cgaactcgtg gaacctgtcg acccgctcct tgagcgccag
     3301 gtcgtccccg aggatccccg agtcgagatc gcccccggtg cccaggccgc agatcaaccg
     3361 gccgccggag atgtcgtcca cggccagcag gtcccgcagg aacaggtacg ggtgccggta
     3421 gttcggcgag ctgacgaagg tgcccagctc gattcggctg gtcaccatcg ccgccgcggt
     3481 cagggtcggc agcgcgccga accagggcga atccggcagt cccgcccaca ccaggtggtc
     3541 gtacgtccag gcgtggtcga atccgagctc ctcggcccgc cgccaccgcg gcgcagcgtc
     3601 cgaccagcgg tactcgggca ggatcgcgat tccgaagcgc atgccgggag ggtatgtcgt
     3661 gcgggtgtgc tgcgcccccg cgaggtctgc tcaggcctcg cccagcggcc catggcaggg
     3721 tggtggtcat gaaggccacg atcctcaccg ccccccgcga catccgcctc gaagacgtgc
     3781 ccgacccgaa gatcgtgcaa ccgaccgacg ccctcgtgcg cgtcactgca gcctgtgtct
     3841 gcggcagcga cctgtggccg taccgcggca tcaacgaggt gaccaagccg acccggatcg
     3901 gtcacgagtt cgtgggaatc gtcgaagagg tcggtgacca ggtccgcagc ctgcgccccg
     3961 gcgacttcgt cgtcgccccg ttcatgtact cggacaacac ctgcccgcac tgccaggtcg
     4021 gcatgcagtc ctgctgcgac cacggcgggt tctggggtgg tcccgacccc gacggcctga
     4081 tggctgacgg cggccagggt gagttcgtcc gggtcccgct ggcggacggc accctggtct
     4141 cgacccgaga ggttcccgac gagtcgatgg tgcccagcct gctgagcctg tccgacgtga
     4201 tgggcaccgg ttggcacgct gccgtcgcag ctggagtcaa ggaaggcgac accgtggtcg
     4261 tcgtcggaga cggcgccgtg gggctgagcg gagtgctcgc cgccaccagg atgggcgccg
     4321 agcgcgtcat cgccatgtcg aggcacgagc cacgccagcg gatcgcccac gagttcgggg
     4381 ccacggacat cgtcgtggct cgcggcgacg aggccgttgc cgcggtggct gagctcaccg
     4441 gcggagtggg cgcggacgcg gtgctcgagt gcgtgggcac gaacgagtcg atgtcgacgg
     4501 cgatcgcggc cgcacggccc ggcgccacgg tcggctacgt gggtgtcccg cacgggatcg
     4561 agtacccggt gcgcgacctg ttcgcccgca acgtcggcat cgctggcggc atcgcgcccg
     4621 cccgccagta cctgccccag cttcgggacg aggtgctcgc gggaaccatc aaccctgggc
     4681 tcgtcttcga cctcgagctg cccctctccg aggtcgcgga ggcgtacgcc gcgatggacg
     4741 agcgccgagc catcaagtcc ttgctgcgac cctgacccag cggtgttcga gctcgagcgg
     4801 gacccgcacg gcggcaccac gctgagcatc gacgggtacc cgcagtcgta cgtctccctc
     4861 gatgaccccg agctcctggt gttcgggtac atgcagcagc tcgcggcggt gctcgacgcc
     4921 ttgccgaccg ggccgctggc ggtaacccac gtgggcggtg ccgcgatgac tcttgcgcga
     4981 tacgtccagc acacccgtcc cggctctccg cagatcgtcc tggagccgga cccgcggctc
     5041 accgaacgag tccgggccga gctacccctg cctcggggac accggatccg ggtccggccg
     5101 cagccgggac gcgaaggcgt gacggccctc aaggacgaca gcgccgacgt gatcgtcgtg
     5161 gatgcgtatg ccggcaacca ggtccccgcg aacctcacca cgagcgagtg gttccgcgag
     5221 gtagcgcggg tcctgcgggc cgacggggtg gtgttgatga acgccgccga cgagcccgac
     5281 cgccggcacg tgacccgggt ccacgccgct ctggccgccg cgctgccctt caccctcgcg
     5341 atcgcggagg tcgacatctg gaagcggagg cgcttcggca acctcgtgct cgtgggctcg
     5401 aggcagccgt tgccacgcga ggcgatcact cgaaccatcg ctgggctgtc cttccccagc
     5461 acggtcgtgc ac
//
LOCUS       DASYFY010000635         3242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1307658, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000635 DASYFY010000000
VERSION     DASYFY010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307658"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..702
                     /locus_tag="VGN19_12960"
     CDS             <1..702
                     /locus_tag="VGN19_12960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecQ"
                     /protein_id="HEV7196842.1"
                     /translation="DDVTAAPCGRCDRCAGAWFPDSIPDTALTTARGRLERAGVELEP
                     RAQWPSGMDRLGVPLKGRISPDETMEVGRAVARLTDLGWGQRLRALLREPDAPAPEEL
                     LRACVPILRDWDWGQRPTAVVAVPSRTRPLLVESLARGIAEMGRLDWLGFLDLVDGGP
                     VGDAGGNSAFRLAGVWGRLAVSAAQRSALGGLNGPVLLVDDVASSRWTLTVAAQALRQ
                     AGAPAVLPLVLAQDA"
     gene            complement(793..1422)
                     /locus_tag="VGN19_12965"
                     /pseudo
     CDS             complement(793..1422)
                     /locus_tag="VGN19_12965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492175.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1485..2933
                     /locus_tag="VGN19_12970"
     CDS             1485..2933
                     /locus_tag="VGN19_12970"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEV7196843.1"
                     /translation="MAVRSVSAARLVPMLGAAVDQSPAYLGLADAVRLLIADGRLPAG
                     TRLPSERDLTTALGVSRSTVTRAYAHLRDRGYLTSRQGSGSVAALPGGPAGRLGTALQ
                     PASDTFTGDLIDLTCASMAAPAGTMAAYERALLKLPHLLGGTGYHPLGLAELREALAQ
                     RYTERGLATSPEQVMVTSGALAGLAVAARALLAPGDRVMLESPTYPNAIDTLRRSGAR
                     PVALPLHGGGWDLEAADATLRQTAPRATYLIPDFHNPTGELMSGAERAALADALGGTH
                     TTAIVDETLVDLAHDPAMELPKPLAAYHSRTITLGGASKSFWGGLRIGWIRAPRDLMP
                     SLVSARLTLDLGAPVVEQLVLLELLAHREEILGERRAAIVASRDALMTALRDRLPQWR
                     FRQPDGGLCLWAELPAPLSTPLCAAADQRGVILAPGAQFAVEGGLERFLRLPFTGHAP
                     EVIADAVERLALAWDDAQAARPSRLGRSPLVA"
BASE COUNT          444 a         1196 c         1147 g          455 t
ORIGIN      
        1 gacgacgtca cggcggcacc ctgcggacgc tgcgaccgct gtgccggcgc gtggttcccc
       61 gactcgatcc ccgacactgc gctgacgacc gcccggggac ggctcgaacg agccggggtc
      121 gagctggaac cgcgcgccca atggccatcg ggcatggacc ggctgggcgt tcccctcaag
      181 ggccgcatct cgccggacga gaccatggag gtcggtcggg ccgttgccag gctgacagat
      241 ctggggtggg gccagcggct gcgggcgctg ttgcgcgagc ccgacgcgcc tgcacccgaa
      301 gagctcctgc gggcctgcgt cccgatcctg cgcgactggg actggggaca acggcccacg
      361 gctgtcgtgg ccgttccctc gcgcacccgg ccccttctcg tcgagtcgct cgctcggggc
      421 atcgccgaga tgggtcgcct tgactggctc ggcttcctcg acctggtcga cggcggcccg
      481 gtcggcgacg caggtggcaa cagcgccttc cggctggccg gggtgtgggg ccggctggcc
      541 gtcagcgccg cccagcgctc agccctgggc ggcctgaacg gcccggtcct gctcgtcgac
      601 gacgtggcca gctcccgctg gacgctgacc gtggccgcgc aggcgcttcg gcaggcgggt
      661 gcgccggccg tgctccccct ggtgctcgcg caggacgcgt gagtcgcggg aggcgccttc
      721 gccgcgtgtc tcgcgtgagt atcgggagtc tcgggagtct cgggagccac tgtcgtccgt
      781 cccaggcggt gccaggggga ccgtgaagac gggcaggaag gcctggaccg tgggcccgat
      841 catcacggca tacagcaccg tgcccaggcc gacgaccccg cccatcagcc agcccaccgc
      901 cagcactgcc agctcgatcg aggtgcggac caggcggatg ctgcgacccg tgcggcgcac
      961 cagtccggtc atcagcccgt cgcgcgggcc tgggccgaac tggctgccga tgtagagcgc
     1021 ccccgccacg ccgttgagca cgatcccgcc gagcaggagc cccaggcggg cgagcatcgg
     1081 tcggggcgca tcgatgaggg ccagcgaggc atccgtcgcg aggccgatga cgacgacgtt
     1141 cgccaccgtt cccaggcccg gccactggcg cagcgggatc cacaggagca gcaccagggc
     1201 gccgacgatg atgacgaccg tgccgaagct cacgggcagg tgcgcagcga tgccgtagtg
     1261 gaagacgtcc cacgggtcga gtcccaggcc ggagcgcagc atcatggcca tcgagacgcc
     1321 gtagagcgtc agccccaccg ccagctggac cagccggcgc accgtacgtc cggcacgcag
     1381 ctgctgcagg ggagtgaggg cggcgagact ggtgcgggtc atgaccgcaa tgattggcct
     1441 gattggactg ttatccaaga gccaattctg tcaaagtggt ctgcatggcc gttcgttccg
     1501 tctccgccgc ccggctggtg cccatgctcg gtgcggctgt cgaccagtct cccgcctacc
     1561 tcgggctcgc ggatgccgtg cgcctgctca tcgccgacgg gcggctcccc gcagggacgc
     1621 ggctgcccag cgagcgagac ctcacgacgg cgctcggggt cagccgcagc acggtgacca
     1681 gggcgtatgc ccatctccgg gaccggggat acctgacctc gcgccagggg tccggaagcg
     1741 tggcggccct cccgggcggc cccgccgggc ggttgggaac agccctccaa ccggcgtcgg
     1801 acaccttcac gggggacctc atcgacctca cctgcgcgtc gatggccgcg cccgccggca
     1861 cgatggccgc ctacgagcga gccctgctca agctccccca cctgctgggc ggcaccggat
     1921 accacccgtt ggggttggct gagctccgag aggccctggc gcagcgctac accgagcggg
     1981 ggttggccac gtccccggag caggtgatgg tcacgagcgg ggcactggcg gggctggcgg
     2041 tcgccgcccg ggcgctgctg gcaccgggcg accgcgtcat gctggagagc cccacctacc
     2101 ccaacgccat cgacacgctg cgcaggtctg gcgccaggcc cgtggcgctg ccccttcacg
     2161 gcggtggctg ggacctcgag gcggccgacg ccaccctgcg acagaccgca ccccgcgcca
     2221 cgtacctcat ccccgacttc cacaacccca ccggcgagct gatgtccggc gccgagcgcg
     2281 ctgcgctggc ggacgccctc ggcgggaccc acaccaccgc catcgtcgac gagacgctgg
     2341 tcgacctcgc gcacgacccg gccatggagc tgccgaagcc gctggcggca taccactcgc
     2401 gcaccatcac gttgggtggg gcgagcaagt ccttctgggg cgggctgcgg atcggctgga
     2461 tccgcgctcc ccgcgacctc atgccgagcc tggtgagcgc tcgactgacc cttgacctcg
     2521 gcgcaccggt ggtcgagcag ctggtgctcc tcgagctgct tgcgcaccgc gaggagatcc
     2581 tcggcgaacg ccgcgcggcc atcgtcgcca gtcgggacgc cttgatgacg gcgttgcgag
     2641 atcggttgcc gcagtggcgg ttccgccagc ctgacggggg tctgtgcctg tgggccgaac
     2701 tgccggcgcc gctgtccact cccctgtgcg ccgccgcgga ccagcgtggt gtgatcctcg
     2761 ccccgggtgc gcagttcgcc gtcgaggggg gactcgagcg cttcctgcgg ctgcccttca
     2821 cggggcacgc acccgaggtc atcgccgatg ccgtcgagcg gttggcgctc gcctgggacg
     2881 acgcccaggc cgctcgtccc agtcgtctcg gcaggtcacc gctcgtcgcc tgaacgccgc
     2941 acccggccac ctgctgacat tggccaccgc gaggactccg gtcccggccc cagccgtgcg
     3001 gtcaagaacg accgagtcag gccagggaac ctccttagtc gagggcggcc gctagggtcg
     3061 cctggtgacc gacctgagcc ctgccgatgt cgaccccctg accgacctgc tcgagatcct
     3121 cgacctggaa gagctcggat ctgcccgcat tctcgtcgag ggtgtcggcg gtggccccac
     3181 cagcgacctg ggcgagtccg gcgcgaccgt gttcctcggt cgcagccagc gcatgcccca
     3241 cg
//
LOCUS       DASYFY010000636         4341 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1044998, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000636 DASYFY010000000
VERSION     DASYFY010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044998"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VGN19_12975"
     CDS             complement(<1..257)
                     /locus_tag="VGN19_12975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196844.1"
                     /translation="MNDTRSASETPPLPPDGVPRLGTHRPGLGAIARGGALNLVGAGV
                     SATIGVLLVVIVTRGLPQRDAGIFFALTSVFLIAQMVAGLGT"
     gene            complement(254..1678)
                     /locus_tag="VGN19_12980"
     CDS             complement(254..1678)
                     /locus_tag="VGN19_12980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196845.1"
                     /translation="MSEVVTESASTPRSTAPVIGGGRVSVAPRIRPGWPLTALLVLYP
                     LWWALGLGTLILFVLTVPMVAHLRHRRIAVPPGFGLWMLFLVWAVASAAMLQYDPPGV
                     AAGAASKRLVTVVFTLACYAAVTVVLLYVGNLTEEEFPRQKLIRQLGALFCTVVAGGV
                     LGTVAPHFQFTAPFEMLLPGSVRSNGFVQSLVHPTAAQVQSVLGFDSGRPAAPFGYTN
                     MWGNCLVLLLAWFAIGWLRGGTRERRILGGIILAVAAVPTVYSLNRGMWLGLGVAMLF
                     MLLRLLGRGSLAAAGAMIAAATVIGVALVASPLSTIIQDRLAHPHSNETRAFTTERTL
                     DAVTYSPLLGYGSTRQPLGNGSSIAVGASANCPRCGSPPLGSNGQLWAILIMHGIGGV
                     VLFVGFFLRGIWAYRRDRTPIGDAGLLALVLSLFFMFVYNALAIPLLISFISLGLLWR
                     NDRDGRSTGSGLPRARYVSFARQQ"
     gene            complement(1675..3402)
                     /locus_tag="VGN19_12985"
     CDS             complement(1675..3402)
                     /locus_tag="VGN19_12985"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HEV7196846.1"
                     /translation="MVNDSAISAVRLSDYVRMLRRRWLSLLVCLVIGAGAAVAYLHWA
                     PKQYRATTGVLVTATGVGTQAADKSAINMDTEAQLVTSSDTLDAVAQRLNVSATQAAD
                     MSSNVSVTVPPNTDILDITYTATSPAAAQTGSSTFAGAYLDQRSAATQSLMNAQDKAL
                     QSRIDAVNAALAPVVKAQSGLPPNSPSFSHLQAQVTALNNQLTALSNQQNQIRAAVLT
                     PGQISSKAVLPTAPSSPNRLVVLTGGILLGLLAGVSLAMLRHRADDLIRNSEDLFRRT
                     GVPVTTVLSTRLHVGAVTLLPPMSADGRGYARLRNLVTTNLHKSERPVVVVAGVRHGG
                     GPVAANLAASLALAGEDVYLVCADVFGKTATALLGGAPRPGLAEVLGGELDAAAVVRT
                     VPDNPRLRVIGPGLNPDRADALIQTRSPRLLIDQLIGSGAYIVIEAPATADSPDAQTL
                     ANMAELAVIVVEVNQTGAREVLDACAQFESMGTQVLGAVVAQYGRDVKPGDPLEEAEP
                     VGADATNDATTDATSGSGVAAEKAAAATPAAATPAPAAPAAGASAADGTASDDAELVP
                     PGPGGRAPR"
     gene            3668..>4341
                     /locus_tag="VGN19_12990"
     CDS             3668..>4341
                     /locus_tag="VGN19_12990"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HEV7196847.1"
                     /translation="MWTPPEAPGPEHQLLFVGGLHRSGTTPLARALAEHPDASGFSGT
                     GVEEDEGQHLQDVYPAAYALGGPGRFARKPASHLTEESALATPDSAARLWTSWKPFWN
                     LDKRILIEKSPSNLVMTRFLQALFPDAAFLMIVRHPVVVTLSTAKWAPRTPLPLVMDN
                     WFVAHDRLRADLPHLSRAKVITYEALTRRPAETVAGVGDFLGLSTAVPHESLRGDRSS
                     VYEQQW"
BASE COUNT          688 a         1484 c         1564 g          605 t
ORIGIN      
        1 gtgccgaggc cggcgaccat ctgcgcgatg aggaagaccg acgtcaacgc gaagaagatc
       61 cccgcatccc gctgggggag cccacgggtc acgatcacga ccaggaggac gccgatggtc
      121 gcggacacgc ccgcgcccac caggttgagc gcacctccgc gggcgatcgc gcccagcccc
      181 ggacggtgcg tcccgaggcg ggggacgccg tccggaggca gtgggggcgt ttccgatgcg
      241 gaccgggtgt cgttcactgc tgccgagcga acgacacgta ccgggcgcgg gggaggccgg
      301 atccggtgct ccgcccgtcc cggtcgttgc gccagagcag accgagggaa atgaaggaga
      361 tcagcagcgg gatcgccagc gcgttgtaga cgaacatgaa gaacagggag agcaccagcg
      421 ccagaagccc cgcatccccg atgggtgtcc ggtcccggcg gtaggcccag atgccccgga
      481 ggaagaaccc gacgaacagg acgaccccac cgatcccgtg catgatcagg atcgcccaga
      541 gctgcccgtt gctgccgagc ggcggactgc cgcagcgagg acagttcgcg ctcgcgccca
      601 ccgcgatgga gctgccgttg cccaaaggct gccgggtcga gccgtaaccg aggagcggtg
      661 aataggtgac cgcatcgagg gtgcgctcgg tggtgaacgc gcgggtctcg ttgctgtgcg
      721 gatgtgccag gcggtcctgg atgatcgtcg acagcgggct cgcgacgagc gcgaccccga
      781 tgacggtcgc cgctgcgatc atcgcaccgg ccgcggcgag gctgcctcgc cccagcaggc
      841 gcagcagcat gaagagcatc gccacgccga ggccgagcca catgccgcgg ttgagcgaat
      901 agacggtcgg taccgccgcc accgccagga tgatcccgcc caggatccgc ctctcgcggg
      961 tcccgccacg gagccagccg atggcgaacc aggccagaag gagcacgagg cagttgcccc
     1021 acatgttggt gtagccgaac ggtgccgccg gacggcccga gtcgaagccg agcaccgact
     1081 gcacctgagc ggccgtggga tggaccaggc tctgcacgaa gccgttggag cggacgctgc
     1141 ccgggagcag catctcgaac ggcgccgtga actggaagtg gggggccacg gttcccagca
     1201 cgccgccggc gaccacggtg cagaacagtg cacccagctg ccggatcagc ttctggcggg
     1261 ggaactcctc ctccgtcagg tttccgacgt agagcagcac taccgtcacc gccgcgtagc
     1321 aggccagcgt gaagacgacg gtcaccagac gcttcgacgc cgcgccggcc gcgacgccgg
     1381 gggggtcgta ctggagcatg gccgcgctcg cgaccgccca gacgaggaac agcatccaca
     1441 gcccgaaccc cgggggcacg gcgatccgcc ggtgccggag gtgcgccacc atcggcacgg
     1501 tcagcacgaa gaggatgagc gtcccgaggc cgagcgccca ccagagcgga tagagcacca
     1561 gcaacgcggt cagcggccag cccgggcgga tgcggggggc caccgagacc cggccccccc
     1621 cgatcacggg agcagtcgac cgcggcgtcg aggcagactc ggtcaccacc tcgctcatcg
     1681 cggagcgcgt cctcccggtc ctggcggaac cagctcggcg tcatcactgg cggtcccgtc
     1741 agcagcgctc gctccagcag cgggagcggc cggcgctggc gtggcagcgg cgggagtggc
     1801 cgcagctgcc ttctcggcgg cgacaccgct cccagaggtc gcgtccgtgg tggcgtcgtt
     1861 ggtggcgtcg gccccgacgg gctcggcctc ctcgagcggg tcgccgggct tgacgtctcg
     1921 cccgtactgc gccacgacag cgccgaggac ctgggtcccc atggactcga actgggcgca
     1981 ggcgtccagg acctcgcgcg cccccgtctg attgacctcg acgacgatga ccgccagttc
     2041 ggccatgttg gccaaggtct gtgcgtcggg gctgtccgcg gtcgcgggcg cctcgatgac
     2101 gatgtacgcc ccggagccga tcaactggtc gatgaggagt cggggactgc gcgtctggat
     2161 cagcgcgtca gcgcggtcgg ggttgaggcc gggcccgatg acgcgcagcc gggggttgtc
     2221 ggggacggtc cggaccacag cggcggcatc cagttcaccg cccagaacct cggccagtcc
     2281 gggccgcggt gcgcccccga gcaatgccgt ggccgtcttg ccgaagacgt cggcgcacac
     2341 gaggtagacg tcctcgccgg ccagcgccag ggaggcggcc aggttggccg cgacggggcc
     2401 accaccgtgg cggacccccg ccacgacgac gacgggccgc tcgctcttgt gcaagttggt
     2461 cgtgacgagg ttgcgcagcc gcgcatagcc ccggccgtcc gcgctcatgg gcggcagcag
     2521 agtgaccgcc ccgacgtgca gccgggtgga gagcacggtg gtcaccggca ccccggtacg
     2581 acggaagagg tcctcggagt tccggatgag gtcgtccgcg cggtgccgga gcatggccag
     2641 gctgacgccg gcgagcaggc ccagaaggat cccgccggtc aggacgacca gacggttggg
     2701 gctgctcggc gccgtcggca ggacggcctt gctgctgatc tggcccgggg tgaggacggc
     2761 ggcgcgaatc tggttctgct ggttgctcag tgcggtgagc tggttgttca gcgccgtgac
     2821 ctgcgcctgc aggtgggaga agctggggga gttcggcggc agcccggact gggccttcac
     2881 gaccggggcc agggccgcgt tcacagcatc gatccgtgac tgcagggcct tgtcctgagc
     2941 attcatcagg gactgggtgg ccgcagaacg ctggtcgagg taggcgccgg cgaacgtcga
     3001 ggaccccgtc tgcgcagcgg cgggactcgt ggcggtgtag gtgatgtcca agatgtcggt
     3061 gttcggggga acggtgaccg acacgttcga ggacatgtct gccgcctggg tggcggacac
     3121 gttcaggcgc tgcgcaacgg catcgagagt gtcgctcgac gtgacgagtt gagcctcggt
     3181 gtccatgttg atggcgctct tgtcggccgc ctgcgtcccg acacccgtcg ccgtgacgag
     3241 gacgccggtc gtcgcccggt actgcttggg ggcccagtgg aggtaggcca ccgcggctcc
     3301 ggccccgatg acgaggcaca ccaggagcga cagccaccgc cgacgcaaca ttcgcacgta
     3361 gtcactcagc cgcacggcgc tgatcgcgct gtcgttcacc atgcccccat accccctata
     3421 tccggcgcgc ggcctcctga ctgtcagcca ccgacgatta ccgggcgccg catcgcgctc
     3481 acgcccttgg cagtcaatac caccgacggt gcgatcggct agcgaagctg gcgccttcac
     3541 cctcgtacga gcgagttgct gagcaaagac acaggttggg ccgccgtgcc gcgtgcgctg
     3601 gtccgccgtc ccgttgcctc ccgtgcgtcg gccggggcgg cggagccggc aagttaatct
     3661 cgcccccatg tggacccctc cggaggcacc cggtcctgag caccagctcc tgttcgtggg
     3721 cggtctgcac cggagcggca cgacgccgct ggcgcgcgcg ctggccgagc acccggacgc
     3781 gagtggtttc agcggcaccg gggtcgagga ggacgagggc cagcacctcc aggacgtcta
     3841 cccggcggcc tatgcgctgg gtggtccggg ccgtttcgcg cggaagccgg cgtcgcacct
     3901 cacggaggag agcgcactgg cgacgcccga ttccgcggcc aggctgtgga cgtcgtggaa
     3961 gcctttctgg aacctcgaca aacggattct gatcgagaag tctccctcga acctcgtcat
     4021 gacccgcttt ctccaggcgc tgtttcccga cgccgcgttc ctgatgatcg tccgccaccc
     4081 cgtggtggtg acgctgtcca cggcaaaatg ggcgcctcgg actccgctcc cgctggtcat
     4141 ggacaactgg ttcgtcgcgc acgaccgcct ccgtgcggat ctcccgcacc tgtcccgcgc
     4201 caaggtgatc acctatgagg cgctgacccg tcggccggcg gagaccgtgg ccggagtcgg
     4261 tgatttcctg ggcctcagca ccgctgtccc gcacgagagc ctgcgggggg accgctcgtc
     4321 ggtctacgag cagcagtggg a
//
LOCUS       DASYFY010000637         2181 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_781934, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000637 DASYFY010000000
VERSION     DASYFY010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_781934"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..487)
                     /locus_tag="VGN19_12995"
     CDS             complement(<1..487)
                     /locus_tag="VGN19_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012879394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEV7196848.1"
                     /translation="MSEQSGTPDNSGFSTRAIHAGQEPDLGTGAVITPIFQVSTYKQD
                     GIGGFRGGYEYSRSANPTRTALEECFAALEGGQRGFAFSSGLAGQDTVLRALLKPGDH
                     VVVPSDAYGGTYRLFNTVLTTWGVEHTIATIADAESVRAALRPGQTKIVWVETPTNPL
                     LG"
     gene            complement(553..1557)
                     /locus_tag="VGN19_13000"
     CDS             complement(553..1557)
                     /locus_tag="VGN19_13000"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEV7196849.1"
                     /translation="MVRIVRIDTPDGDQRDLFDQWAQMYIIAGQHLFGDDHSAWSADQ
                     LRELHRSRERLRIAWVAVDHEQVVGSVQLVMPMRDNPQLTLVNLAVAPEHRRQGLGSA
                     LLELAEQEGLRHGRSVFMADTQWGASQRDESGEGFAAAKGYAAAQTLARNTLSLPADT
                     TLLEQWCAGDGGDGYVLRTCWDGIPQEWLADRAELSRRMSTDAPLGDLELEEERWDEQ
                     RVREEYERIAAMGRRFVETFAVDERTGRLVGHTQVQVSTEAPRVAYQQDTLVLREHRG
                     HRLGLRLKAANTLAVMEQSPGTQVVRTWNAEENRHMLAVNEQLGYVRDGFLREWQKVV
                     "
     gene            1675..>2181
                     /gene="msrA"
                     /locus_tag="VGN19_13005"
     CDS             1675..>2181
                     /gene="msrA"
                     /locus_tag="VGN19_13005"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEV7196850.1"
                     /translation="MIFGSRAKTTLPSSENALRGRSDRPFQIARDHQVLHTPMEGPWP
                     EGTEVLYVAMGCFWGAERIFWRQPGVVTTAAGYMGGLTPNPTYEETCTGRTGHAETVL
                     VAYNPKETSPELLLKEFWENHDPTQGNRQGNDVGTAYRSAVYWTTEGQRLAAEATREA
                     FQKVLSDNG"
BASE COUNT          329 a          772 c          738 g          342 t
ORIGIN      
        1 tgccgaggag cgggttcgtg ggcgtctcga cccagacgat cttggtctgg ccgggtcgca
       61 gcgccgcgcg gaccgactcg gcgtccgcga tcgtggcgat ggtgtgctcg acgccccagg
      121 tcgtcaggac ggtgttgaag agccggtacg tgccgccgta ggcgtcactc ggcacgacga
      181 cgtggtcgcc gggcttgagc agcgctcgca gcaccgtgtc ctggccagcg agcccggacg
      241 agaaggcgaa accgcgctgg ccgccctcga gtgcggcgaa gcactcctcc agcgccgtgc
      301 gggtcgggtt ggccgagcgg ctgtactcgt agccaccgcg gaagcccccg atgccgtcct
      361 gcttgtaggt agagacctgg aagatcggcg tgatgaccgc tccggtgccc aggtccggct
      421 cctggcccgc gtggatcgca cgcgtcgaga agccggagtt gtcgggggtg ccgctctgct
      481 cactcatgcc ggcaaggcta acgccctacg cctcgggtcc cacgccggct gcacgtgcgc
      541 ccgctgaccg tctcagacca ccttctgcca ctcgcgcagg aagccgtctc ggacgtaacc
      601 gagctgttcg ttgaccgcca gcatgtgtcg gttctcctcg gcgttccacg tgcgcacgac
      661 ctgggtaccc gggctctgct ccatcacggc gagggtgttc gcggccttga gccgcagccc
      721 gaggcgatgc ccccggtgct cccgcagcac cagcgtgtcc tgctggtagg ccaccctcgg
      781 cgcctctgtc gatacctgca cctgggtgtg tccgaccagc cgacccgtcc tttcgtcgac
      841 cgcgaacgtc tcgacgaagc gccgccccat ggcagcaatc cgctcatact cctcgcgcac
      901 ccgctgttcg tcccaccgct cttcctcgag ctcgaggtca ccgagcggtg cgtccgtgct
      961 catccgtcgg ctcagctcag cgcggtccgc caaccactcc tgcggtatgc cgtcccagca
     1021 cgtccgtagg acgtacccgt cgccaccgtc cccggcgcac cactgctcca gcagggtggt
     1081 gtcggcgggc agcgagaggg tgttgcgtgc cagggtctga gcggcggcat accccttggc
     1141 ggctgcgaag ccctcgccgc tctcatcgcg ctggctcgct ccccactgtg tgtcagccat
     1201 gaagacactg cgtccgtggc gcagtccttc ctgctcggca agctccagca aggccgagcc
     1261 cagaccttgc cggcgatgct ccggcgcgac ggcgaggttg accagggtca gctgggggtt
     1321 gtcccgcatc ggcatcacga gctggaccga tcccaccacc tgctcgtggt cgacggccac
     1381 ccaggcgatc cgcaggcgtt cgcggctccg gtggagctcg cggagctggt cggccgacca
     1441 ggcggagtgg tcgtcaccga aaaggtgctg cccggcgatg atgtacatct gggcccactg
     1501 gtcgaagaga tcgcgctggt cgccgtcggg ggtgtcgata cgtacgatcc gaaccatgcg
     1561 cccaccctcg cggaccggcg tgctcccggc aaagggtttc cgagggcgac tgttcggccg
     1621 gaagacgcgc gatcccgctg gaacaggcaa cgctgcgccc gcgttggaaa gaccgtgata
     1681 ttcggatcgc gcgccaagac cacgctgccc tcgtcagaga acgccctacg cgggcgctcc
     1741 gaccggccgt tccagatcgc gcgggaccac caggtcctgc acacgccgat ggagggcccg
     1801 tggccggagg gcacggaggt gctctatgtc gccatgggct gcttctgggg ggccgagcga
     1861 atcttctggc ggcagccggg cgtcgtgacc acggcagccg gctacatggg cggcctgacc
     1921 ccgaacccga cctacgagga gacctgcaca ggccggacag gccacgcgga gacggtgctc
     1981 gtggcctaca acccgaagga gacctcccct gagctgctgc tcaaggagtt ctgggagaac
     2041 cacgacccca cccagggcaa ccggcagggc aacgacgtcg gcacggccta ccggtcggcg
     2101 gtgtactgga cgaccgaggg gcagcgactg gccgccgagg ccacccgcga ggccttccag
     2161 aaggtgctgt cggacaacgg g
//
LOCUS       DASYFY010000638         5126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_465865, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000638 DASYFY010000000
VERSION     DASYFY010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5126
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465865"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..392)
                     /locus_tag="VGN19_13010"
     CDS             complement(42..392)
                     /locus_tag="VGN19_13010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide cyclase / dehydrase and lipid
                     transport"
                     /protein_id="HEV7196851.1"
                     /translation="MSRTRVDVVDETFIRAAPATIRPTFSDPRWVASVWPHLELSVVR
                     DRGVKGIRWAVAGQVDGDMEVWIEPFRDGAIVHHYVRGTRGPRAPRNVTTRHTLRWKR
                     AVHALKDRLEDGRR"
     gene            513..2312
                     /locus_tag="VGN19_13015"
                     /pseudo
     CDS             513..2312
                     /locus_tag="VGN19_13015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145470.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-dependent synthetase/ligase"
     gene            2329..3699
                     /locus_tag="VGN19_13020"
     CDS             2329..3699
                     /locus_tag="VGN19_13020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196852.1"
                     /translation="MPAGKLSSPTSQAIAFAVAWLVFFTALQWSVVRYEVLIVAALTA
                     ATVALALWQWRGWRVRLTPWSVALMLAGSALATATVPLFSYLAPTGLAVATTMLVGAP
                     LACAALLVARGRRAIALWVAAGVVALLTYAACAATVIISSPHPRIDVWVALQQASDGM
                     LRGQDFYSMTWVGSPGIKDAFTYLPWTAVLLAPGRWLFGDVRWALGFWMVVALVGVWL
                     LARGASAAESESTIARSAVRSGLWSWTAVAVTALLVLAPGTLTQLDQAWTEPLLFAAV
                     VWWAVLVQRGRTSSGRGGWWAVIPLALACASKQHFAILLPIVLVWRPFGWRRTAVTGL
                     LAGVLIAPWVLMSPADFVHDTITLLVSFHPIRFANTLYLLAQNTYGVTLPFYVTGLAV
                     LATLGAICWTVWRRQPSLPELLRWLALMLMVANVVNKQAFYNQFWLVGALVVLSLTMP
                     PKIVDS"
     gene            complement(3668..4951)
                     /locus_tag="VGN19_13025"
     CDS             complement(3668..4951)
                     /locus_tag="VGN19_13025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196853.1"
                     /translation="MSAALALAVGACSAGSADTTRGARTSGPATTQQNAPDPTVGRED
                     ALAALLSRRATALRTHDRAAFLATLDNPSSGFALRQLTMFDAVSQLPLAAFSYGTPEP
                     APALSAARVAQVGPQAWVSRIAGSYQLTGFDTAPREFESYFTVVRRGSAWKLADDTDG
                     GNQPQLWDIPDFTVLRSQTTLVVGAGPASRLRPYLALGDTAVPRVTRVWGTTWKRKIV
                     LVVPATAAQMADQVGQQVGTIAQVAAVTDGPFDNTGRANADRIVLNPRAFANLQPKGQ
                     QVVVTHESTHVAIRSTTNRPVPLWLSEGMADFVGYRDVGVGRQQVAAALLDRVRAGRG
                     PTGLPGAADFDPSRSTIAPSYNAAWLAVNRIVDRFGLEALVRFYRTAATSPKPSAQPG
                     DAEVNTAAAFQSVLHVSEASFTADWLSYLRSLAAS"
BASE COUNT          776 a         1746 c         1785 g          819 t
ORIGIN      
        1 gtgcggtcgg ccatgcgcgg aaggctacag cgccgagcct ttcaacgacg accgtcttcc
       61 aacctgtcct tgagtgcgtg cacggcccgc ttccaccgca gggtatgccg ggtggtcacg
      121 ttccgggggg cgcgcggccc ccgggttcct cgaacgtagt ggtgcacgat cgccccatcg
      181 cggaacggct cgatccacac ctccatgtct ccgtcgacct ggccggccac ggcccaacgg
      241 atgcccttga ccccgcggtc tcgcaccacg gacagctcga gatgcggcca gaccgaagcc
      301 acccatcgcg ggtccgagaa cgtcgggcgg atggtggcgg gtgcggcgcg gatgaaggtc
      361 tcgtccacga catcgacccg ggttcgtgac atgtggcgac cctcgatcgt tcgaccagag
      421 gaccgtctgt gagatgggac gcgtcctcgc cccgtcaaga tactcctcgg taagatctgg
      481 cggaggcacc cgcctacgtc aaaggagact ctgtgcagga acacgtcgca cccccactcg
      541 tccccgtcac caccgagggt tccctcgctg accttccggc ccgcaacgca gccaccaacc
      601 caggggcgat cgcgttctcc cgcaaggagg gcggccggtg ggtcgaggtg tcggcagggc
      661 agttcaacga cgacgtgcgc gcggtggcca aaggcatgat cgccgccggg atccgccccg
      721 gggaccgggt cgccttgatg tgcaagacgc ggtacgagtg gacgctgacg gacttcgcca
      781 tctggacggc cggagcggtc accgtcccga tctatgagac gtcctccgcg gagcaggtca
      841 gctggatcct cgccgactcc ggtgccagcg cgatcatgct cgagaccgcg ggccacctcg
      901 ctgccctcga ggagaaccgg gaccagctca gcgatctgaa acaggtctgg caggtcgacg
      961 caggtgccat cgaggagctc aagagcgccg gcgccgcggt gaccgacgag tagcttgccg
     1021 gtgcgacgag cgggctgaac cgggcctcga ccgcgacgat catctacacc tctggcacca
     1081 ccggtcgccc caagggtgtg ctcctgacgc atgacaactt catggccctg gccgagaacg
     1141 ccctggccaa gctggagtca gtggtcaagg cagacggtgc ctcgacgttg ctgttcctcc
     1201 cgctggccca cgtcttcgcc cgcttcatcc aggtgctgtg cgtggccggc gaggcgaaga
     1261 tggggcacag cgcggacatc aagaacctgc tgggcgactt cgctgagttc aagccgacgt
     1321 tcatcctgtc ggtgccgcgc gtcttcgaga agatctacaa ctccgccgag gccaaggcca
     1381 ccgccgacgg caagggcaag atcttcgcca ccgcggccga cacggccatc gcctggtcga
     1441 cggcgcagga caccggcggt gcccctctgg gactgaaggt ccggcacgcc gtgttcgacc
     1501 ggctcgtcta cggcaagctg cgcgccgcga tgggtggaca ggtgatgtac gccgtgtccg
     1561 ggggcgcccc gctcgggacc cgcctcggcc acttcttccg cgggatcggc gtgaccgtcc
     1621 tggagggcta cgggctgacc gagacgacgg ccccggccac ggtcaacgtg cccgaccgtg
     1681 tcaagatcgg caccgtcgga gcgccgttgc cgggcgtggg catccggatc gccgacgacg
     1741 gcgagatcct gattcgcggc aacaacgtct ttgccagcta tcacaacaac tccgaggcca
     1801 cctcgggcgc gatggtcgac ggatggttcc acaccggtga catcggcgag ctggacgagg
     1861 acgggtatct caagatcacc ggccgcaaga aggagctgct cgtcacagcc ggcggcaaga
     1921 acgtcgcccc ggccgtgctc gaggaccgcc tgcgcgccca ccccctggtg tcgcagtgca
     1981 tcgtggtcgg cgaccagaag ccgttcatcg ccgccttgct caccctggac gaggagatgt
     2041 acccggcctg ggcgaagaac aacggcatac cgcaggtccc ctttgcgcaa gccgccacgg
     2101 acccgacggt gctcgtcgcg ctgcagcggg cggtcgacga cgccaacaag gccgtctcca
     2161 aggccgagtc gatccgcaag ttcgccgtgc tggagggcga cttcaccgag gagaacggct
     2221 acctgacgcc cagcctgaag ctcaagcgca acgtcgtgat gaaggacttc cacgacaagg
     2281 tcgaggccct gtacgcgggc gccaaggagt gacctctacg gtctaggcat gcccgccggc
     2341 aagctcagct ccccaaccag ccaggccatc gcgttcgcgg tggcctggct ggtgttcttc
     2401 accgccctgc agtggagcgt cgtgcggtac gaagtgctca tcgtggccgc gctcaccgcg
     2461 gccacggtgg ctctggccct gtggcagtgg cgtgggtggc gggtgcggct cacaccgtgg
     2521 tcggtggcct tgatgctggc cggctcggcg ctggccacgg cgaccgtgcc actgttcagc
     2581 tacctggccc cgaccggctt ggcggtggcc accacgatgc tggtgggggc tcccctcgcg
     2641 tgcgccgccc tcctggttgc acgcggccga cgcgctatcg ccctctgggt ggccgccggg
     2701 gtcgtggccc tcctgacgta tgccgcgtgc gcggcgaccg tgatcatctc ctcgccccac
     2761 ccgcggatcg acgtgtgggt ggcgttgcaa caggcgtccg acgggatgct gcgcggccag
     2821 gacttctact cgatgacctg ggtcgggtcg cccggaatca aggacgcctt cacgtacctt
     2881 ccctggacgg cggtactcct cgcccctggg cggtggctgt tcggggatgt gcggtgggcg
     2941 ctggggttct ggatggttgt ggcgctggtc ggcgtctggc tgctcgcccg gggcgccagc
     3001 gccgctgagt cggagtcgac gatcgcgcgg tcggcggtgc ggagcgggct ctggagctgg
     3061 actgcggtcg cagtcaccgc actgctcgtc ctcgcacccg gcaccctgac ccagctcgac
     3121 caggcctgga cggagccgct gctgttcgcc gcggtggtct ggtgggcggt gcttgtccag
     3181 cgtggcagga cgtcctcagg tcgtggcggc tggtgggcgg tgatcccact ggctctggcc
     3241 tgcgcgagca aacaacattt cgccatcctg ctcccgatcg tgctcgtgtg gcggccgttc
     3301 gggtggcggc gcaccgcggt gaccggccta ctggccggag tgctgatcgc gccgtgggtc
     3361 ctgatgagcc cggccgactt cgtccacgac accatcacgc tgctggtgtc gttccacccg
     3421 atccggttcg cgaacacgct gtacctgctt gcccagaaca cctatggcgt cacgttgccg
     3481 ttctacgtga ccgggctggc cgtcctggcc accttgggcg ccatctgctg gacagtgtgg
     3541 cgccgtcaac cctcgctgcc cgagctgctg cgctggctgg ccctgatgct catggtggcg
     3601 aacgtggtga acaaacaggc gttctacaac cagttctggc tggtgggtgc tctcgtcgtg
     3661 ctctcactca cgatgccgcc aaagatcgta gatagctgag ccagtcggca gtgaaggacg
     3721 cctccgagac gtgcaggacc gactggaacg ccgcggcggt gttgacctcg gcgtcgccag
     3781 gctgcgccga gggtttgggc gaggttgccg ctgtgcggta gaagcgcacc agcgcctcta
     3841 ggccgaagcg gtcgacgatg cggttcacgg caagccaggc ggcgttgtag ctcggggcaa
     3901 tcgtcgaccg ggaggggtcg aagtcggcgg cgccgggcag cccggtcggt cctcggccgg
     3961 cccgaactcg gtcgagcaac gcggcggcga cctgctgacg ccccacgccg acatcgcggt
     4021 aaccgacgaa gtccgccatc ccctcggaca accacagcgg gaccggacgg ttggtggtgg
     4081 accggatcgc cacgtgggtc gactcgtggg tcaccacgac ttgctgaccc ttgggctgga
     4141 ggttggcgaa ggcgcgaggg ttgagcacga tgcggtctgc gttcgcgcgc ccggtgttgt
     4201 cgaagggccc atcggtcacg gctgccactt gcgcgatggt gcccacctgc tggccgacct
     4261 ggtcggccat ctgcgccgcg gtggcgggga cgacgaggac gatcttgcgc ttccacgtgg
     4321 tgccccagac gcgagtgacc ctcggcactg ccgtgtcacc gagcgcgaga taggggcgca
     4381 accgtgaggc cgggcccgcc ccgaccacca gtgtggtctg actcctcagg acggtgaagt
     4441 cggggatgtc ccacagctgt ggttggttcc cgccgtccgt gtcatcggcg agcttccagg
     4501 cagagccgcg tcgcaccacg gtgaaatagg actcgaactc gcgcggtgcg gtgtcgaaac
     4561 cggtgagctg gtagctgccc gcgatccggg acacccacgc ctgcggcccg acctgcgcga
     4621 cccgcgccgc actcagggcg ggcgcgggct cgggtgtccc ataggagaag gccgccagcg
     4681 ggagctgaga caccgcgtcg aacatggtga gctggcgcag ggcgaacccg gacgacgggt
     4741 tgtcgagggt cgccaggaag gctgctcggt cgtgggttct cagggccgtg gcacgccggg
     4801 aaagcagcgc agcgagcgcg tcctcgcggc cgaccgtggg atccggggca ttctgctggg
     4861 tggtcgccgg gcccgacgtc cgggcaccac gcgtcgtgtc cgccgaccct gcagagcagg
     4921 ctccgaccgc gagcgccagg gcagcactca cgagaaggac ggtggcccgt cgaccgacgg
     4981 atcgaccctg tcccgatagc cacgtcgcac ccatgctcac gcgcccatcg taggaggccc
     5041 tctcagccca ctgcccggac gtgggcggcc cagggctcgc gtcgcgccgt cactgtcgca
     5101 ccctcgtggg cgctgacgag accggc
//
LOCUS       DASYFY010000639         1544 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1675969, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000639 DASYFY010000000
VERSION     DASYFY010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1675969"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VGN19_13030"
     CDS             complement(<1..593)
                     /locus_tag="VGN19_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009481981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196854.1"
                     /translation="MSSRFVRRVRTASGAVAVQLVVKDRGEVVEIEHVDSAHTDAELA
                     LLLAAARERLEPGQQSLDLGELVVEPARLGDTADWTRPVSGPDPAFADLAPAPASQGR
                     PRSERAGGRVVGTAALTLWDVLGDAYARLGFDTLADEAFRAMTLARVIEPTSKADTVR
                     VLTEIGAPAPGVRTLFRALARCEQRDYPGKLATACLA"
     gene            complement(687..1112)
                     /locus_tag="VGN19_13035"
     CDS             complement(687..1112)
                     /locus_tag="VGN19_13035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196855.1"
                     /translation="MATRVVTVNDILDGHVGLDLECFDRIYLNGWVPNLQVSGQVVNF
                     LTHHLGFPIPSPAILEKIGLRFRKAVTEFAAANDVAVIRFAKGERKLEVMRPHLERLA
                     RAGGCGVAAIGVAQEFQRVFTGTTYHPDAESDLTRATPW"
BASE COUNT          252 a          567 c          512 g          213 t
ORIGIN      
        1 tgagccaggc aggcggtcgc cagcttcccg gggtagtcgc gctgctcgca gcgggcgagt
       61 gcgcggaaca gggtgcgcac accgggggcg ggtgcgccga tctcggtcag cacccggacc
      121 gtgtcggcct tcgaggtcgg ctcgatcacc cgggccaggg tcatcgcccg aaacgcctcg
      181 tcagcgaggg tgtcgaaccc gagccgggcg taggcatcgc ccagcacgtc ccacaacgtc
      241 aacgccgccg tacccaccac acgcccgccc gcacgctcag accgcggccg cccctgcgaa
      301 gcaggagccg gcgcaaggtc tgcaaacgca ggatcgggtc cagagaccgg gcgcgtccag
      361 tcggcggtgt cgccgagtcg agcgggctcg accaccaact ccccgaggtc gagcgactgc
      421 tgaccgggct cgagccgctc acgcgctgcc gccagcagca acgcgagctc ggcatcggtg
      481 tgggcggagt cgacgtgctc gatctcgacg acctcaccgc ggtctttgac cacgagctgg
      541 accgcgacag cccccgaggc cgtccgcact cgacgcacga accgcgagct caccggtccg
      601 aggctaccca gcagcccaat tcttagtgac cagacgccct cactcggcga cgagaaccag
      661 caggtcaaac cctcggcgcc tgcgattcac cacggagtgg cacgagtcag gtcagactcg
      721 gcatcggggt ggtaggtggt gccggtgaac acccgctgga actcctgggc caccccgatc
      781 gcggccaccc cacacccgcc cgcgcgggcc agccgctcca ggtgcgggcg catcacctcc
      841 agcttgcgct cgcccttggc gaagcggatc accgcgacgt cattggccgc ggcgaactcg
      901 gtgaccgcct tgcggaaccg cagcccgatc ttctccagga tcgccggcga cgggatcggg
      961 aagccgaggt ggtgggtcag gaagttcacc acctgcccgg acacctgcag gttgggcacc
     1021 cacccgttga ggtagatccg gtcgaaacac tccagatcca gaccgacgtg cccgtccagg
     1081 atgtcgttca cagtcaccac acgggtcgcc acggcgcacc tccggtccgg cggcagctca
     1141 acccgccagc ctggccccac ccgaacgcga cgtcacctgc caacccgacc accacctcgg
     1201 cggtccgagg cgaagcctca ctggtcgatg acctggtcgg cgtccgaaca cggcctgctt
     1261 cgcggtcgct gtgctgtcgt tcaccattgg gcattcggga gaggcgcgtc cccggtccac
     1321 gcgctgccca gggcgcggcg acccgggtgg tttcccgcgg cggcgccccg cgcggctcgc
     1381 ggggtgtgtg cagaagtaca tggctgcaac gggccgttgt gcatcggtgt cgcgcgcctg
     1441 cggcggcagg gtcggaccca gtcggcgtga gctggcacac atcaagcgga accgaggtcc
     1501 tgacatggtc gctctggcag caggcttgat tctgatcgct ctcc
//
LOCUS       DASYFY010000640         2900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1466076, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000640 DASYFY010000000
VERSION     DASYFY010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1466076"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..1125)
                     /locus_tag="VGN19_13040"
     CDS             complement(25..1125)
                     /locus_tag="VGN19_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEV7196856.1"
                     /translation="MATIGPRRADGTYRARYRDRAGREHARHFKRKLDAQRWLDEVTT
                     SIITRAYVAPGAGRITFREYAEGWRVVQVHRYSTAVHVEGALRRRVYPVIGDIPLESI
                     VPSDIQALVKRLEQTLAPRSVIVTYRYVATIFKAAVRDRRIALTPCDGIRLPRDVKAP
                     ITPMATSEVQALVEAIPERYKAMVILAAGTGMRQGEIFGVTLDRVDFLRRTLFIDRQL
                     TGVRGEAPTFGPPKTASSVRTVPLPDVVLQALAEHVRHFPPGPHGVIFSGSDGQLLRR
                     SAFGNLWRRVNDEAGVKGRTFHSLRHYYASLLIRHGESVKTVQARLGHASAAETLDTY
                     SHLWPDSDDKTREAVDAYLGTARSQESAAESH"
     gene            complement(1173..1403)
                     /locus_tag="VGN19_13045"
     CDS             complement(1173..1403)
                     /locus_tag="VGN19_13045"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEV7196857.1"
                     /translation="MDALDKMLTVAEVAAMIRVPQGTLRYWRHLGSGPRSFKMGPRRV
                     VYREQDVLEWVDAQYAERETTRDGMTRYQSPA"
     gene            complement(1521..1763)
                     /locus_tag="VGN19_13050"
     CDS             complement(1521..1763)
                     /locus_tag="VGN19_13050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196858.1"
                     /translation="MEQVVERPVRVEVLVPAPPPPPAPPQPATLPKNATEWGAHLRQL
                     GLVLDSGLIYNRDLPTLELALQGLIEAYNRRARRRY"
     gene            2210..2452
                     /locus_tag="VGN19_13055"
     CDS             2210..2452
                     /locus_tag="VGN19_13055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196859.1"
                     /translation="MRVGEGGIQAAAGTSATTGEHGPETVMSVKVVVVAAVARQATTR
                     RPQTWCAGLSSGDRERLRKAHMEAADLVLGEQGPAG"
     gene            2548..>2900
                     /locus_tag="VGN19_13060"
     CDS             2548..>2900
                     /locus_tag="VGN19_13060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196860.1"
                     /translation="MPAHLDPLVTQRRADQVDLLEDPADQPAAITGADHELLGALAEE
                     AALHAQVRPALVLLGVDHQDAWGADDEVVHVGSRARDASVVQDPYAGTREAVEAPPSA
                     SSPFAPTAQAVVLLGL"
BASE COUNT          443 a          979 c         1009 g          469 t
ORIGIN      
        1 cacggtattc ggcagcgtgc gggctcaatg gctttccgca gctgattcct gagaccgtgc
       61 agtgcccagg taggcgtcga cggcctcccg ggtcttgtcg tcggagtcgg gccacaggtg
      121 gctgtaggtg tcgagcgtct cggcggcgct ggcgtgcccc agccgcgcct gcaccgtctt
      181 gaccgactcg ccgtggcgga tcagcagcga ggcgtaatag tgccgcaggc tatgaaacgt
      241 ccggccctta acgcccgcct cgtcgttgac acgacgccac aggttgccga acgccgaccg
      301 gcgcagcagc tggccgtcgg agccggagaa gatcaccccg tgcgggcccg gcgggaaatg
      361 ccgcacgtgc tcggcgaggg cctgcagcac gacgtccgga agcgggacgg tgcggacgct
      421 gcttgcggtc ttcggcggtc cgaacgtcgg cgcctccccg cggacgccgg tcagctgccg
      481 gtcgatgaac agcgtgcgcc gcaggaagtc gacccggtcg agggtcaccc cgaagatctc
      541 gccctgccgc attccggtcc cggccgccag gatgaccatg gccttgtaac gctcgggaat
      601 cgcctcgacg agcgcctgta cctcgctggt cgccatcggg gtgatcggcg ccttgacatc
      661 ccttggcagg cggattccgt cacagggtgt gagggcgata cggcggtcgc ggaccgcggc
      721 cttaaagatc gtcgcgacat accgataggt gacgatgaca gaccgcggcg cgagagtctg
      781 ctctaggcgc ttgacgagcg cctgaatgtc ggagggcacg atcgactcaa gcgggatgtc
      841 gccgatgacc gggtaaacgc gcctgcgcag agcaccctcg acgtggacgg cggtgctgta
      901 ccgatggacc tgcacgaccc gccacccttc ggcatactcg cggaaggtga tgcggccggc
      961 gccgggggcg acgtaggcgc gcgtgatgat gctcgtcgtc acctcgtcca gccagcgctg
     1021 ggcatccagc ttccgcttga agtgacgcgc gtgctcccgg ccggcgcgat cgcggtaccg
     1081 cgcccgatag gtgccgtccg cacgccgggg tccgatggtg gccatgcgtc ctcacctcct
     1141 gcccggccgc gtccgtcgtg gtcgacgtat cgctaggccg gcgactggta ccgcgtcatc
     1201 ccgtcacgag ttgtctctcg ctcggcatac tgcgcgtcga cccactccag cacgtcctgc
     1261 tcccgataca ccacccggcg cggccccatc ttgaagctcc gaggcccgct acccaggtga
     1321 cgccagtagc gcagcgtgcc ttgcggcacc cggatcatcg cggccacctc cgcgaccgtg
     1381 agcatcttgt ccaatgcgtc catgtcgtct gctccttgcc agcccgcgcc agccgcggtc
     1441 caccaacccc ctaagcaccg accccccctc ttagtggaca ccgtttttca caacgattcg
     1501 gtaaccctcc cgagcgcttg ttagtaccgg cgacgcgccc ggcggttgta cgcctcgatg
     1561 aggccttgca gtgccagctc gagggtcggg aggtctcggt tgtagatcag gccggagtcc
     1621 aggaccaggc cgagttgcct gaggtgggcg ccccactccg tggcgttctt ggggagggtc
     1681 gcgggttgtg gcggcgcggg cggtggtggg ggagcgggca ccagcacctc gacgcgcacc
     1741 ggacgctcga cgacctgctc cacgacctcg atggcggcga gccctgacgc ggcggctcga
     1801 cgctgttccc aagcccggtg acggcacgcg ggggaacacc atttcggaac tcgaccgcgc
     1861 agggggacgg cgacgaccgt cccgcaccag ccgcagttga cgatttgccc tggcagcctc
     1921 ggcagacgtc ggcgagggac cctggccgcg acctcagggg cctcggattg atcgctcatg
     1981 gaacgttacc ccccacccct catagtggcg attacatcac aacgactttg ccgtggccga
     2041 gggtgcaaga ggtgtgtggg ttacgaggtc gtgctgaaac ggtcacagcg gcataacgct
     2101 ggcgacggtg ggcaggttcg aagctgactg tgttgggact tggcggcggg gggtaacgtt
     2161 cgcacgctcg cgagcgcggg tggtgtaacg atcgccggct cctcggagcg tgcgtgttgg
     2221 ggagggtggc atccaggcgg ccgctgggac ctcggcgacg acaggagagc acggcccgga
     2281 gaccgtcatg tccgtcaagg ttgttgtcgt cgccgcggtc gcccgacaag ccacgacgcg
     2341 ccggccgcag acgtggtgtg ctggcctctc ctcaggcgac cgggaacgcc ttcgcaaggc
     2401 gcacatggag gccgcggatc tcgtcctcgg tgagcagggc ccggctgggt gatgacaccc
     2461 tcgagttatt ttgggccaga gggcgatgac gcctcgggtg gcgaacgacc cgccgagcag
     2521 cggccagtcg gcggcgacga aacacaggtg cccgcacacc tggaccccct cgtcacccag
     2581 cgccgagcgg accaggtcga cctgcttgag gaccccgccg accagcctgc tgcaatcacg
     2641 ggagccgacc atgagcttct cggtgcgctc gccgaagaag ccgccctcca cgcgcaggtg
     2701 aggccggccc ttgtactgct tggcgtcgac caccaagacg cctggggggc agatgacgaa
     2761 gtggtccacg ttggttcccg tgcgagggat gcgtcggtcg tgcaggatcc gtacgctggg
     2821 actcgcgagg cggtcgaggc gccgccgagt gcctcctcgc cgttcgcgcc gacggcccag
     2881 gccgtggtgc tcttggggct
//
LOCUS       DASYFY010000641         2728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1676212, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000641 DASYFY010000000
VERSION     DASYFY010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1676212"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..640)
                     /locus_tag="VGN19_13065"
     CDS             complement(<1..640)
                     /locus_tag="VGN19_13065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEV7196861.1"
                     /translation="MVTRDFVHLHVASGFSMRYGTATPEALVERAAQQRQPVLALTDR
                     DGLYGAVRFTTAAAAAGVAPVLGVDLAVGSDVSDGRTSGGRARTPVRGGPVRDPRHPR
                     VTVLARGRAAGVSPGVGWAALCRLVTDTHLRGERGEPVSAISVIAARCLGAAPSEGRP
                     GDHPSPLVVLLGPDSDVGRAVRLRRLDQARVLLAQWRRQLPADALVIEVVCHG"
     gene            complement(627..1052)
                     /locus_tag="VGN19_13070"
     CDS             complement(627..1052)
                     /locus_tag="VGN19_13070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAV_6107 family HEPN domain-containing protein"
                     /protein_id="HEV7196862.1"
                     /translation="MTSSTLDLLDRSRHSLLLACQSPDTTTRHRHAQLAALRAAASVL
                     AARRQPRRTALRAGVPGPHSLWELLPAWAPELAEWAGFFETMTVRSGPVSARDADDLL
                     RQAEIFLDLVCHSLGVPAQGHVQADVLVPASDRRRDGHP"
     gene            complement(1062..1430)
                     /locus_tag="VGN19_13075"
     CDS             complement(1062..1430)
                     /locus_tag="VGN19_13075"
                     /inference="COORDINATES: protein motif:HMM:NF039800.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6504 family protein"
                     /protein_id="HEV7196863.1"
                     /translation="MVRRYEEPIEVRQGFQAVTGTPPDNQPERPEAFVWRGRLYVVRA
                     VLDQWQERRPWWRDAREGRDVLADARERRVWRVEASPGRLAGVGVYDLGATRPGPAGP
                     SCTAPPGGQRSQWQLLRVSD"
     gene            1754..2284
                     /locus_tag="VGN19_13080"
     CDS             1754..2284
                     /locus_tag="VGN19_13080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEV7196864.1"
                     /translation="MSPDVQPRPSGAHDLSAHSGVQRVLAALAIHHVTPEIVTLPEAA
                     RTAAAAAAALGITPGEIANSLVFRAHTGRGAPQPLLVLTSGAHKVDLVKVSELLDGID
                     HIDRADADFVRVHTGFAIGGVAPVGHTHPVNTVVDVSLSRHRHVWAAAGHSHTVFRTT
                     YEELLRVTGGHAIEVA"
     gene            complement(2331..>2728)
                     /locus_tag="VGN19_13085"
     CDS             complement(2331..>2728)
                     /locus_tag="VGN19_13085"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7196865.1"
                     /translation="KVSLTTSAISALLPVTDTARAKEFYDKLELPFVGTNDEGSLMYQ
                     LSGGAILMLLPREAGTQNPSTALTWEVSDVQSELKELESRGIVFEDYDLPGLKTVDHI
                     AELGSTRSAWFLDPDGNVLCVHEGGLVSA"
BASE COUNT          448 a          978 c          903 g          399 t
ORIGIN      
        1 cgccatgaca gaccacctcg atgaccaacg cgtcagcagg cagctgtcgg cgccactgcg
       61 cgagcaaaac ccgagcctgg tcgagccgtc gcagacgcac tgctcgaccc acatccgagt
      121 cgggcccgag cagcaccacc agcgggctgg gatggtcgcc aggacgaccc tcggaggggg
      181 ctgcgcccag gcatcgtgcg gcgatcacgc tgatcgcgct caccggctca ccccgctcac
      241 cgcgcaggtg cgtgtcggtg accaggcggc acaatgccgc ccagcccact ccgggtgaca
      301 ccccggccgc acgcccccgc gcgagcaccg tcacccgtgg gtggcgcgga tcgcgcacgg
      361 ggcctccgcg aacaggtgtc cgcgcacggc cgccactcgt cctgccgtca ctcacgtccg
      421 accccaccgc caggtccacc ccgagcaccg gtgcaactcc cgccgccgct gcagcagtgg
      481 taaaccgcac cgcaccgtag agcccgtcgc ggtcggtcag ggcaaggact ggctgccgtt
      541 gttgcgcggc tcgctccacg agtgcctcag gagtcgccgt tccataacgc atcgagaagc
      601 ccgacgcgac gtgcaggtgg acgaaatcac gggtgaccat ctcgccgcct gtcgctggca
      661 ggcaccagca cgtctgcctg gacatgcccc tgagcgggta ctccgaggct gtgacagacc
      721 agatcgagaa agatctcggc ctgccgtaac agatcgtcgg catcacgggc gctcaccggc
      781 ccggaacgga ccgtcatcgt ctcgaagaac ccggcccact cggcaagctc gggtgcccag
      841 gcgggcaaca gctcccagag actgtggggc cctggaaccc cggcgcgtaa ggcagtacga
      901 cgcggctgac ggcgagccgc gagcaccgaa gccgcggcgc gcaacgccgc gagctgggca
      961 tgtcggtgcc gggtcgtggt gtctgggctt tgacaggcca gcaggaggga atggcgggag
     1021 cggtcgagga ggtcgagcgt gctggaggtc atcacgccag ctcagtccga gactcgaagg
     1081 agctgccact ggctgcgctg cccgccaggg ggagccgtgc agctgggccc agcaggaccc
     1141 ggccgagtcg caccgaggtc gtagaccccc acgccggcga gccggccagg gctcgcctcg
     1201 acccgccaca cccggcgctc acgggcgtct gccaggacgt ctcgtccctc acgagcatcc
     1261 cgccaccaag gtcgtcgctc ctgccactgg tcgagtaccg cccgcacgac gtagagccga
     1321 ccccgccaca cgaaggcctc cgggcgctcc ggttggttgt cagggggtgt tcccgtgacg
     1381 gcctggaatc cctggcggac ctcgatgggc tcttcgtacc ggcggaccac gagtgggctc
     1441 ccttcgtgct tgagcagaac tggctaggac tgggtgggca ggcaaggcag gcccccgagc
     1501 tagggcgccc tgcagcggac tgtggtggga tgtgcgccct ggccctgtga ggggcggggt
     1561 cgaggcgcct gatcacaggg ccagagccgc acagatggct ctccacggtg gtcccggcca
     1621 cggttgccgt gggtcgggag cactgttgtg aaccattttt cgaacgtatg ttcgataaga
     1681 aagacggtac accggcatac cgacagccgc aatcctctgg ctcggccagg ccgtccgcac
     1741 ctagcattcg tgcatgtcgc cggacgtcca gcccaggccc tcaggcgcgc acgacctcag
     1801 cgcccactcg ggcgtccagc gcgtcctggc cgccctcgcg atccatcacg tgacgcccga
     1861 gatcgtcacc cttcccgagg cggcccgcac cgcagccgca gcggccgcag ccttgggtat
     1921 caccccgggc gagatcgcaa actccctggt ctttcgagcg cataccgggc gcggcgctcc
     1981 gcagcccctc ctggtgctca cctccggcgc gcacaaggtg gacctcgtca aggtgtccga
     2041 gctgctcgac gggatcgacc acatcgaccg ggccgacgcc gacttcgtgc gcgtccacac
     2101 gggcttcgcc atcggtggtg tcgcgcccgt gggccacacc caccctgtga acaccgttgt
     2161 ggacgtctcg ctcagccgcc accgtcacgt ctgggcggcg gcgggccata gccacaccgt
     2221 gttccgcacg acgtatgagg agctgctgcg cgtgaccggg gggcacgcca tcgaggtggc
     2281 ctagctcgat acttggctcg atcaaggcga ccgagctcga tcaggcggag ctaggccgaa
     2341 acgagaccgc cctcgtgcac gcagagcacg ttgccgtcgg ggtcgaggaa ccaggccgac
     2401 cgggtgctgc ccagctcggc gatgtggtcg accgtcttca ggccgggcag gtcatagtcc
     2461 tcgaagacga tgcctcggct ctccagctct ttcagctcgc tctggacatc agagacctcc
     2521 caggtcagag cagtgctcgg attctgggtc ccggcctcgc gcggcagcag catcaagatg
     2581 gccccgccgc tcagctggta catcaggctg ccctcgtcgt tcgtgccgac gaacggcagt
     2641 tccagcttgt cgtagaactc cttggcccgg gcggtgtccg tgaccggaag caacgccgag
     2701 atcgcactgg tggttagtga caccttgc
//
LOCUS       DASYFY010000642         1646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1308322, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000642 DASYFY010000000
VERSION     DASYFY010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1308322"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VGN19_13090"
     CDS             <1..187
                     /locus_tag="VGN19_13090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196866.1"
                     /translation="LGLALSRGLIEAMDGSLTPEETPGGGLTMVIALPATAASGQEPI
                     GPGRRERTAPAPVQGVS"
     gene            184..876
                     /locus_tag="VGN19_13095"
     CDS             184..876
                     /locus_tag="VGN19_13095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018134620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196867.1"
                     /translation="MTTILVVDDEPQILRALAINLRARHYSVVTAANGTDALALAGRH
                     NPDLVVLDLGLPDMDGIDVVRGLRGWTTVPIVILSGRSDSSEKVDALDAGADDYVTKP
                     FSVDELLARLRAVTRRSAPSEAMPVVQLGSTTVDLPARRVTALDGGQAHDVRLTPTEW
                     HLLEVMLRNPGKLLTRHQLLAEVWGAGYENADGNLRVYMAQLRRKLEPDPARPRYLLN
                     EPGLGYRFEPKP"
     gene            965..>1646
                     /locus_tag="VGN19_13100"
     CDS             965..>1646
                     /locus_tag="VGN19_13100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017886983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEV7196868.1"
                     /translation="MATSTRTELRGWLLRGISEPAAQHLGPHAEPAATREHRDPWWKV
                     MCLTGVDYFSTLGYQPGIAALAAGVLSPMATVVLVLVTLFGALPVYRRVAMESPRGEG
                     SIAMLERLLSFWKGKLFVLVLLGFAATDFLITMTLSAADATAHLDENPFWPAVLQGHQ
                     VIVTLVLLAALGGVFLKGFTEAVGIAVVLVGVYLALNVVVIGDAMWHIITEPVVVTHW
                     RTAVTESHG"
BASE COUNT          240 a          584 c          576 g          246 t
ORIGIN      
        1 gctggggctc gcgctgtccc gcggcctgat cgaggcgatg gacggttcgc tgactcccga
       61 ggagacaccc ggtggcggcc tgaccatggt gatcgcccta ccggccaccg cggccagcgg
      121 ccaggaaccg atcgggcctg gacgtcgcga gcgcacggca cccgcaccgg tacaaggagt
      181 ttcgtgacca ccatcctggt cgtcgacgac gagccccaga tcctgcgcgc cctcgccatc
      241 aacctgcgcg cgcggcacta ctccgtggtg accgctgcca acgggacgga cgcgctggct
      301 ctcgccgggc gccacaaccc cgacctggtg gtgctcgacc tcggactgcc ggacatggac
      361 gggatcgacg tcgtgcgcgg gctgcggggc tggaccaccg tgccgatcgt catcctgtcc
      421 ggccgcagcg acagctcgga gaaggtggat gcgctggacg cgggcgccga cgactacgtg
      481 accaagccct tctcggtcga cgagctgctg gcccggctgc gcgccgtcac ccggcggtcg
      541 gcaccgagcg aggcgatgcc cgtcgtccag ctgggcagca cgaccgtcga cctgccagcc
      601 cggcgggtga ccgcgctgga cggtggccag gcacacgacg tccggctcac cccgaccgag
      661 tggcacctgc tcgaggtgat gctgcgcaac cccggcaagc tgctcacccg tcaccagctg
      721 ctggccgagg tctggggcgc gggctacgag aacgccgacg gcaacctgcg ggtatacatg
      781 gcccagcttc gccgcaagct cgagccggac ccggccaggc ctcggtacct gctgaacgag
      841 cccgggctcg gctaccggtt cgagccgaaa ccctaacaac ttccttgcag gttcggctcg
      901 ggcgaggcag cacgatgatg gagagggctg gcggcgggtg ccggccacgg tgaggaggac
      961 ccaggtggcg acgtccacgc ggacggagct gcgtggctgg ctcctgcgcg gaataagcga
     1021 gccggcggcc cagcacctcg ggccacacgc cgagccggcc gccacccgcg agcaccgcga
     1081 cccgtggtgg aaggtcatgt gcctgaccgg cgtggactac ttctccaccc tcggctacca
     1141 gcccggcatc gcggcgctgg ccgcgggagt gctgtccccg atggccaccg tcgtgctggt
     1201 gctcgtcacg ctgttcggcg ccttgccggt gtaccggcga gtcgcgatgg agagcccacg
     1261 cggcgagggg tccatcgcga tgctggagcg gctgctgtcc ttctggaagg gcaagctgtt
     1321 cgtcctggtg ctgctgggtt tcgctgccac ggacttcctg atcaccatga cgctgtccgc
     1381 cgccgacgcg accgcccacc tggacgagaa cccgttctgg ccggccgtcc tgcaaggcca
     1441 ccaggtgatc gtcaccctgg tcctgctggc ggcgcttggc ggggtgttcc tcaagggctt
     1501 caccgaggcc gtcggtatcg ccgtcgtcct ggtcggcgtc tacctggcgc tgaacgtggt
     1561 cgtcatcggg gacgccatgt ggcacatcat caccgaaccg gtcgtggtga cccactggcg
     1621 gacagcggtc accgagtcgc acggca
//
LOCUS       DASYFY010000643         1686 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1623731, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000643 DASYFY010000000
VERSION     DASYFY010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1623731"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..99
                     /locus_tag="VGN19_13105"
     CDS             <1..99
                     /locus_tag="VGN19_13105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEV7196869.1"
                     /translation="GAVTVRLGHTVLRSSSAGPAALAVLSAAGRWR"
     gene            complement(121..1245)
                     /locus_tag="VGN19_13110"
     CDS             complement(121..1245)
                     /locus_tag="VGN19_13110"
                     /inference="COORDINATES: protein motif:HMM:NF022114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gmad2 immunoglobulin-like domain-containing
                     protein"
                     /protein_id="HEV7196870.1"
                     /translation="MSDRTDFLHPDYEPGEFDRVERQLRQALTMEAQRIHPHDRLVNV
                     LRVAHEAGPTSDSTRQRRWLVPVAAAAAVALIAGGAWAATHGDDNQLVPTPPASSGPA
                     TTGGPTTPAQSATRTTPTPPPVAGAASLPVYFVGPVAPGKPTYKLFREFLRGGVRPGA
                     SPAERAKASLVLAIHAQASGSSDGYLQPWAGQTIGDVTVTSQRISIAVANAGSTGLDP
                     ETQRLAVQELVWTAQAAVGQGPIPVHFTIADGSTALFGRFPTSHTYTRPGTTDLGTDL
                     APLWVTSPARGAVLAASAPVVVQGEAIVFEATVGWQLRRGPTVVRSGTTMASIGAPAQ
                     GSYSLNLGRLSRGSYTIRVFETSMADGSVAAEKSVSFTVR"
     gene            complement(1242..>1686)
                     /locus_tag="VGN19_13115"
     CDS             complement(1242..>1686)
                     /locus_tag="VGN19_13115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEV7196871.1"
                     /translation="LLRDDLAAEEVVQDAFIAVHRRWDSLRNHESAAAYLRRAVVNGA
                     RSGLRHRGVEERYLSREQGEPTAHGRRSEASAEDRAIDREATSSMIVALGRLPQRQRE
                     VLTMRYYLDLSEAEIADALGISAGSVKAHAHRGLASLRDRMETSS"
BASE COUNT          204 a          595 c          638 g          249 t
ORIGIN      
        1 ggggccgtca ccgtgcggct cggccacacc gtgctgcggt cctcgagcgc cggtcccgcc
       61 gcgctcgccg tcctcagcgc agccggtcgc tggcgctgag cgccaccggc cgcgctggca
      121 ctagcggacg gtgaacgaga ccgacttctc cgcggccacg ctgccgtcgg ccatgcttgt
      181 ctcgaagacc cggatcgtgt aggagccccg gctcagccgg cccaggttca gcgagtagct
      241 gccctgcgct ggcgcgccga tgctggccat cgtggtgccc gacctcacta ccgtcggccc
      301 gcgccgcagc tgccacccga cggtggcctc gaacacgatt gcttcgccct gcacgaccac
      361 cggcgcgctc gccgccagga ccgcgcccct tgcgggggag gtgacccaga gtggggccag
      421 gtccgtgccg aggtcggtgg tgccgggccg ggtgtaggtg tgcgaggtgg ggaagcgacc
      481 gaacagggca gtcgacccgt ccgcgatggt gaagtgcacg gggatggggc cctggcccac
      541 ggccgcttgg gcggtccaga ccagctcctg cacggccagc cgttgcgtct cggggtcgag
      601 tcccgtcgac cccgcgttgg ccacggcgat gctgatccgc tgcgacgtca cggtgacgtc
      661 accgatcgtc tggccagccc acggctggag atacccgtca ctgctgccgg atgcctgggc
      721 gtggatggcg agcacgaggg aggccttggc gcgctcggcc ggactggccc cggggcgtac
      781 gccgccccgg aggaactcgc ggaagagctt gtaggtgggc ttgccggggg ccaccggccc
      841 cacgaagtac accggcaggc ttgccgcccc ggccacagga ggtggggtgg gggtcgtccg
      901 cgtcgctgac tgcgccgggg tggtggggcc gccggtcgtc gctggaccac tgctggcagg
      961 gggtgtcggg accagctggt tgtcgtcccc gtgggtggct gcccaggccc cgcccgcgat
     1021 gagcgcgacc gccgcggccg ccgccaccgg gacgagccac cggcgctgcc gcgtgctgtc
     1081 cgaggtcggt cctgcctcgt gagccacgcg caggacgttc acgagacggt cgtgcgggtg
     1141 gatgcgctgg gcctccatcg tcaaggcctg ccgcagctgc cgctcgacgc ggtcgaactc
     1201 gcccggctcg tagtcggggt gcaggaagtc ggtccggtcg ctcatgacga cgtctccatc
     1261 cggtcgcgca gggaggcgag cccgcggtgg gcgtgggcct tgaccgagcc ggcggagatg
     1321 ccgagggcgt cggcgatctc ggcctcgctc aggtcgaggt agtagcgcat ggtcaggacc
     1381 tctctctggc gctggggcaa ccggcccagc gccacgatca tcgagctggt ggcttccctg
     1441 tcgatggcgc ggtcctcagc gctcgcctcg ctgcgccggc cgtgtgccgt gggctcaccc
     1501 tgttcgcgcg acaggtaccg ctcctcgacg ccgcggtggc gcaggccgga cctcgcgccg
     1561 ttgaccacgg cacggcgcag gtatgcagca gcgctctcgt ggttgcgcag ggagtcccag
     1621 cgacggtgga ccgcgatgaa ggcgtcctgc acgacctcct cggccgcgag gtcgtcgcgc
     1681 agcagg
//
LOCUS       DASYFY010000644         2955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1099089, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000644 DASYFY010000000
VERSION     DASYFY010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1099089"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VGN19_13120"
     CDS             complement(<1..354)
                     /locus_tag="VGN19_13120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018769411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEV7196872.1"
                     /translation="MRTTRLEAFSDGVLAIVITIMVLNLRAPDKPTVSALANSGAGLL
                     AYLLSFVYIGIYWSNHHHMFQLVRKVDGAILWANLGLLFFLSLVPFSTQWMDNTTWTP
                     TYRGAGFPVTIYGVNL"
     gene            complement(364..1239)
                     /locus_tag="VGN19_13125"
     CDS             complement(364..1239)
                     /locus_tag="VGN19_13125"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEV7196873.1"
                     /translation="MNEPGTPSTPVERASHRIAVVGDVGGHVSALEAELVRLGADPVT
                     GALPDDLTVVQVGDLVHRGPDSARVVSLVDRYLCRQPKQWVQLVGNHEAQYLREPAFV
                     WPERLDQPSVDTLRRWWSDGQLRVAAAFTDLDGRGHLVTHAGVTAGFWREVLGAPRSA
                     ETAAAALNGLPRDDEHALFRAGRLLHGRRDVGPVGPLWACASSELVPSWLGLELPFSQ
                     VHGHSSLYDWPQRSFRCSREIRIKTILDAPARHEITSLSGGRLIGVDPGHLVAASGPW
                     RAWEVELCEPTSARS"
     gene            complement(1236..>2955)
                     /locus_tag="VGN19_13130"
     CDS             complement(1236..>2955)
                     /locus_tag="VGN19_13130"
                     /inference="COORDINATES: protein motif:HMM:NF021824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="putative nucleotidyltransferase substrate
                     binding domain-containing protein"
                     /protein_id="HEV7196874.1"
                     /translation="DRTGEVFVVLSGRVSLWNASDGAGHEPPDETLGRGGLFGFSAML
                     TERSVGPRAVASAALTVARVPGAVASRAFTSKRGARFLAESLSSSSRRPSRLPAYSTV
                     DDLITGAALVVEPSRTVADVARLMTSTDRGCAVVELPGRELGLVTDATLRRRVIVDGV
                     SAASPVSAVMTTAPVVAASGESAAEALIRLFEHDGEFVVVVDPDRTVRGVVSLRDFTA
                     SSTTADVSLHEQLRRAVDMDQLAERAHGVPALLGDLLSRGLASGRVIAVYATVLDAVI
                     RRAIELVLAPHEALSAESFTWMSLGSNGRREAVLSSDVDSAVAFIGPVSPQLMGQYRV
                     AFGEVHELLARAGFASDGHGATAGRRAFMRTNDEWRTAARGWMTDPLRNQGAMMTSLM
                     VDGRPLFGQVGIPAVAATFKDLRAHPATMRLLLQDSLASRAKLRTTREALRRRPSTFD
                     IKGHAILPVVNLARWAALSVGSPALGTTERLRAAAGSAILPQDHADTLVEVFEVLQRL
                     RLRYQLMAHRAGRRPSDRLTFQLMSPIDRSVTAQAVREVAAVQRRLANISAYVPAEEW
                     ALPSSS"
BASE COUNT          503 a         1017 c         1022 g          413 t
ORIGIN      
        1 caggttgact ccatagatgg tgaccggaaa cccggcaccc cggtacgtag gcgtccacgt
       61 ggtgttgtcc atccattgag tggagaacgg gacgagcgac aggaagaaca gcagcccgag
      121 gttcgcccac aggatcgcac cgtcgacttt tcggacgagc tgaaacatgt ggtggtggtt
      181 gctccagtag atgccgatgt agacgaagct cagcaggtac gccaacagcc cggcgccgga
      241 gttggccaga gccgagacag tcggcttgtc cggggcccgg agattcagga ccatgatcgt
      301 gatgacgatc gcgaggacgc cgtcactgaa ggcctcgagc ctcgtggtcc gcatcggctc
      361 agtctaggag cgggctgaag tgggctcgca gagttcgacc tcccacgcgc gccagggccc
      421 gctggccgcg acgagatgcc cagggtcgac cccgatgagc cggccgcccg acaggctggt
      481 gatctcgtgc cgcgctggag cgtcgaggat cgtcttgatg cggatctcac gggaacagcg
      541 aaagcttcgc tggggccagt cgtagagcga gctgtgacca tgcacctggc tgaatggcag
      601 ttccaggccg agccagctcg gcaccagctc ggacgaggcg caggcccaga ggggcccgac
      661 cggcccgacg tcccggcggc cgtggagcag tcgcccggcg cgaaacagcg cgtgctcgtc
      721 gtcgcgaggc agaccattga gagcggccgc cgcagtctcg gcactgcgcg gggcgcccag
      781 cacttcccgc cagaacccag ccgtcacccc cgcatgcgtg accaggtgcc cgcgaccgtc
      841 caggtccgtg aacgcggcgg cgacccgcag ctgtccgtcg gaccaccagc ggcggagggt
      901 gtcgaccgag ggttggtcga gacgctcggg ccagacgaac gccggctccc gcaggtactg
      961 cgcctcgtgg ttccccacga gctgcaccca ctgcttcggc tgccggcaca aatatcggtc
     1021 aaccaggctg acgacccggg ccgagtcagg accacgatgc accagatcgc cgacctgaac
     1081 caccgtcagg tcgtctggga gcgcgcccgt gactgggtcg gcgcccagcc gcaccagctc
     1141 ggcctccagg gcgctgacgt gaccgccgac atcgccgacg accgcgatgc gatgcgatgc
     1201 cctctcgacg ggcgtggacg gcgtgcctgg ttcgttcatg acgagctggg caaggcccat
     1261 tcctcggccg gcacgtaggc cgagatgttg gccaggcgcc gctggacagc agccacctct
     1321 cgaacggcct gggccgtcac gctgcggtcg atcggcgaca tgagctggaa cgtcagtcgg
     1381 tccgacgggc ggcgtcccgc acggtgggcc atgagctggt atcgcagccg aagtcgctgg
     1441 agcacctcga agacctcgac cagggtgtcc gcgtggtcct gcggcaggat cgccgatccg
     1501 gctgccgcgc gaaggcgctc ggtggtgccc agcgccggag acccgacgct cagcgccgcc
     1561 cagcgggcca ggttgacgac gggaaggatg gcgtggccct tgatgtcgaa ggtgctcggg
     1621 cgccgcctca gcgcttcacg ggtagtcctc agctttgccc ggctcgccag cgagtcctga
     1681 agcagcaagc gcatcgtggc ggggtgcgcc cgcaggtctt tgaaggtcgc cgccacagca
     1741 gggatcccca cctggccaaa gagaggtcgt ccgtcgacca tcagcgacgt catcatggcg
     1801 ccctggtttc tcaaggggtc cgtcatccag ccacgggcgg ccgtccgcca ctcgtcgttg
     1861 gtccgcatga acgcgcggcg tcccgcggtg gcaccgtgcc cgtcactggc gaaccctgct
     1921 cgcgccagga gttcatggac ctcaccgaag gccacccggt actgacccat cagctgcggc
     1981 gagaccggac cgatgaacgc cacggcggag tcgacgtccg agctcaacac cgcttcccga
     2041 cgaccgttgc tgcccaagga catccaggtg aacgactcgg ccgagagcgc ctcgtgcggt
     2101 gcgaggacca gctcgatggc gcgacggatc accgcgtcga gcacggtggc gtagaccgcg
     2161 atcactcgcc cggaggccag tcctcgcgag aggagatcgc ccaacagcgc aggcacaccg
     2221 tgagcacgct ccgcgagctg gtccatgtcg acggctcgac gcagctgctc gtgcagggac
     2281 acgtccgccg tggtcgacga ggcggtgaag tcgcgtagcg agaccacccc gcgcaccgtg
     2341 cggtcagggt cgaccacgac gacgaactcg ccatcgtgct cgaacaggcg gatcagtgcc
     2401 tcggcggcgg actctcccga ggccgccacg acgggagccg tcgtcatcac cgccgagacg
     2461 ggcgacgcgg ctgagactcc gtcgacgatg acgcgtcggc gcaaggtcgc gtccgtgacg
     2521 agccctagct cccggccagg cagctcgacc accgcgcagc cacggtctgt ggaggtcatg
     2581 agccgggcga cgtccgcaac ggtgcgtgat ggttcgacga cgagggcggc tcccgtgatc
     2641 aggtcgtcca ccgtgctgta tgccggcagc ctgctgggtc ggcgtgagct gctggacagg
     2701 ctctcagcga gaaaccgcgc tccgcgcttg gaggtgaagg ccctcgaggc caccgctccg
     2761 gggactcggg ccacggtcag cgcggctgac gccacggcgc gggggccgac cgagcgttcg
     2821 gtcaacatgg ccgagaaccc gaaaaggccg cctcgcccga gcgtctcgtc tggaggctcg
     2881 tgccccgcgc cgtcggaagc gttccacagg ctcacccgcc ccgacagcac gacgaacacc
     2941 tcaccggttc ggtcg
//
LOCUS       DASYFY010000645         1558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_993286, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000645 DASYFY010000000
VERSION     DASYFY010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_993286"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..759)
                     /gene="ligD"
                     /locus_tag="VGN19_13135"
     CDS             complement(<1..759)
                     /gene="ligD"
                     /locus_tag="VGN19_13135"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEV7196875.1"
                     /translation="MSPDAKVAVQVDGRTLTLTNLGKVLYPDTGFTKAEVLDYYQRVA
                     PVLLPHIAGRPLTLKRYPEGVDGEAFFQKHVTAHRPDWIRTARVDSESSRARGTSVTY
                     LVVDDLPALIWAANLAGLELHVPMWRMPRIREPDLLVFDLDPGAPANIVDCCRVAEDL
                     RPLLEADGLAPLAKTSGGKGLQLYAAISGLTSEQASDQAKMYAERVERDQPRRAVSRM
                     TKVLRTGKVLIDWSQNNGSKTTVAPYSLRARQFPT"
     gene            865..1338
                     /locus_tag="VGN19_13140"
     CDS             865..1338
                     /locus_tag="VGN19_13140"
                     /inference="COORDINATES: protein motif:HMM:NF016557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196876.1"
                     /translation="MQSVSLSHGMEGVVAKRLDSRYLPGVRTDQWRKIKNHRRQEVVV
                     AGYKPGKGNRTGQVGSLLIGVNDDSGLIYAGHVGTGFSVETLRLLGERLEPLRRSDSP
                     YHGPVPPEHARTAVWVEPRLVIEVTFDRWTRAGRMRAPVYKGLRDDKDPADVVRE"
BASE COUNT          238 a          504 c          578 g          238 t
ORIGIN      
        1 ggtggggaac tggcgggcgc gcagcgagta gggggcgacg gtggtcttgg agccgttgtt
       61 ctggctccag tcgatgagga ccttgccggt gcgcagcacc ttggtcatcc gcgacaccgc
      121 gcggcggggc tgatcgcgtt cgacccgttc ggcgtacatc ttggcctggt cgctggcctg
      181 ctcggaggtc aggccggaga tcgcggcgta cagctgcagt cccttcccgc ctgaggtctt
      241 ggccagcggc gcgaggccgt ccgcctcgag cagcggccgc aggtcctcgg ccacccggca
      301 gcagtccacg atgttggcag gcgcccccgg gtcaaggtcg aagaccagca ggtcgggctc
      361 gcggatgcgg ggcatccgcc acatcgggac gtgcagttcc aagccggcca ggttggccgc
      421 ccagataagc gcgggcaggt cgtcgaccac caggtaggtc acgctggtgc cgcgcgcccg
      481 cgagctttcc gagtcgaccc gggcggtgcg gatccagtcg ggccggtgcg cggtgacgtg
      541 cttctggaag aaggcctcgc cgtccacgcc ctccgggtag cgcttcagcg tcaagggccg
      601 acccgcgatg tgcggcaaca gcacgggcgc cacccgctgg tagtagtcga gcacctcggc
      661 cttggtgaac ccggtgtccg gatacaggac cttgccgagg ttggtcagcg tcagcgtccg
      721 cccgtccacc tggacggcga ccttggcgtc agggctcacg gtgctttccg ttcgccttct
      781 gggcgcccaa ggcaccgcct tgctggcctg gccggttcct actggcagac cccaccgtcg
      841 ttccccggcg aggacttccc cgccgtgcag tcggtctcgc tttcgcacgg catggaaggc
      901 gtagtggcca agcgactgga ctcgaggtac ctgccgggcg tgcgtaccga ccagtggcgc
      961 aagatcaaga accaccggcg ccaggaggtc gtggtggccg gctacaagcc gggtaagggc
     1021 aaccggaccg gccaggtcgg ctcgctgctc atcggggtga acgacgactc cgggctgatc
     1081 tacgcgggac acgtcgggac cgggttcagc gtcgagacgc tgcgcttgct gggggagcgg
     1141 ctcgagccgc tgcgccgttc ggactctcct tatcacggac cggtgccgcc cgagcatgcc
     1201 cgcaccgcgg tgtgggtaga gccacggctg gtgatcgagg tgaccttcga caggtggacc
     1261 agggccggcc ggatgcgcgc gccggtgtac aagggcctgc gcgacgacaa ggaccccgcg
     1321 gacgtggtcc gtgagtgagc cgaaggggcg cggcgccgcc tggactgagg agcgaggaac
     1381 gagcgacgag ggaaggcggc gcctaagagc gccccggagg cgagcggaga aaaaatggag
     1441 caggtcttcg atgagcgtaa ccacgacctc atcgtcaacg tagggggcag gctcacgcac
     1501 cgcgaccggg cgatggtgag cccgttcgac tccgttgtcc agggcggtga cgcggtct
//
LOCUS       DASYFY010000646         2904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_572466, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000646 DASYFY010000000
VERSION     DASYFY010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572466"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VGN19_13145"
     CDS             complement(<1..485)
                     /locus_tag="VGN19_13145"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196877.1"
                     /translation="MAGLPHQGVVVGVDGSKPSQVALEWAAEEALRFNTGLHLLHATD
                     IDWLVAASLISRADDHPVTDAILDDAVDQLQRCFPDLRVSAQATTGTAAQDLTCASTH
                     AREIVLGSHGRSQSRLPLGSVAHAVAMHAACPVVVVRESGNPEARTGPVVVGVDGSEL
                     SL"
     gene            complement(589..>2904)
                     /locus_tag="VGN19_13150"
     CDS             complement(589..>2904)
                     /locus_tag="VGN19_13150"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-transporting P-type ATPase"
                     /protein_id="HEV7196878.1"
                     /translation="TRDFADTAVIGLVVLVNSFIGLRQELRADRSVSELSRLVAPKAW
                     AVRAGRPVEVPAVELVPGDVVLLRQGDLVPADGVLIEGAGVQVDESTMTGEAYPVDKA
                     VAADPGPNRTEDTEPARTVESTTALFSGTLLLHGRGRARITATGARSAVGRIASLMAP
                     APGATPLQRRMTRLSGQLAITAILLSAVVLLVGLWRGQSPEVMLLTTIALIVAAVPES
                     LPLVVTVSLALAARRMASRHAVVRTLSAVETLGSVTVLATDKTGTLTRGSMTVTDIWH
                     PDSVEDDQLMRAITLCNDATIGAEPSNNRGDPTERALLVAALASGVDIDAVRAANPRV
                     AEVPFDSTRKAMSTTHGGAAGRRLLIHKGAPERLLAGDLLVDSPELIDRAQERADTWA
                     SGGMRVIAVAQQELDPEVAPDTARRANLLGLVGLQDPLRDSSADTVAACQDAGLHVVL
                     VTGDHPATAQAIATQVGIVTEKARNDPAEIRTEAGAAYALRRGVVARATPADKHALVK
                     AFQASGQVVAMTGDGVNDAPALRQADIGVAMGVRGTQVARQAADLVLMDDDLGTVVAA
                     VEEGRRVYDNVRRFLVYALSGGTSEVMLMLAGPVVGVPLPLLPAQILWVNLLTHSFAG
                     AGLAAQPADPEVLRRGPRPPDEGPLARGLWWRTLVLATYLSASSAAVMLFSPAAQAHS
                     AALLALGAGQLAIAWGVRTAGARIWHDGRPDVLVPALLLAATMLAASATVAPLRQLLD
                     TRPVSGSVWAMAAAAAAGAYATARLLRARSL"
BASE COUNT          456 a          974 c         1030 g          444 t
ORIGIN      
        1 agggagagct ccgacccgtc cacgccgacg accaccggtc cggtccgggc ctcggggttg
       61 ccggattcgc gaacgacgac gacggggcag gccgcgtgca tggccacggc gtgcgctacc
      121 gagccgagcg gaaggcggga ctgcgaacgt ccgtgcgagc ccagcacgat ctcgcgggcg
      181 tgggttgagg cgcaggtgag gtcctgggcg gccgtacccg tggtcgcctg agcagagacg
      241 cgcagatcag gaaagcatcg ctggagctga tcgacggcgt cgtcgaggat ggcgtcggtg
      301 accgggtgat cgtccgcgcg actgatcaac gaagccgcga cgagccagtc gatgtctgtg
      361 gcgtgcagga gatgcaagcc cgtgttgaac cgcagcgcct cttcggcggc ccactcgagc
      421 gcaacctgcg acggtttcga gccgtcaact ccgacgacga ctccttggtg gggcagtcct
      481 gccatggtga cctcctgggt tcgcgtccac gctttcatca caggctccac ggcataccgg
      541 gccgaaagtc ccggaagcca ggcatcacct gcgccggttg agttgcggct acagcgatct
      601 ggcccgcaac agcctggcgg tcgcataggc ccccgcggcc gccgcggctg ccatggccca
      661 caccgacccg ctcacgggtc gcgtgtcgag aagctgccgc aggggcgcga cggttgccga
      721 tgccgccagc atggttgcgg cgagcaggag cgccggaacc aggacatctg ggcgcccgtc
      781 gtgccagatc cgagcgcccg cggtgcgcac gccccacgcg atggccagct gcccggctcc
      841 caatgccagc agggctgcgg agtgtgcttg ggcggcgggg ctgaacagca tcacggccgc
      901 gctcgacgcg ctcagatacg tggcaagaac cagcgtccgc caccacagac cccgggccag
      961 tggaccttcg tcaggaggtc gtggacctct gcggagcacc tcgggatccg caggctgggc
     1021 tgcgagcccg gcacccgcga aggagtgggt cagcaggttg acccagagga tctgcgccgg
     1081 gaggagcggc aatggcacgc ccacgaccgg ccccgcgagc atcagcatga cttctgaagt
     1141 gcccccggag agcgcataga caaggaatcg gcggacattg tcatagacgc gacggccctc
     1201 ttcgactgcc gcgaccacgg tgccgaggtc gtcgtccatg aggacgaggt cggctgcctg
     1261 gcgcgcgacc tgagtgcccc tcacccccat ggccacacca atgtcggctt gccgcagcgc
     1321 aggggcgtcg ttgactccgt cccccgtcat cgcgaccacc tggccgctgg cctggaaggc
     1381 cttcaccaac gcatgcttgt ctgcgggcgt ggcgcgtgcc acgacgcctc gccggagggc
     1441 gtatgcggcg cccgcctcgg tgcgtatttc ggccgggtcg ttgcgagcct tctcggtgac
     1501 gatgcccacc tgggtggcga tcgcctgggc tgtggcggga tggtctccgg tgacgaggac
     1561 gacgtgtagg ccggcgtctt ggcacgcggc gacggtgtcg gcggaggagt ctcgtagggg
     1621 gtcctgcaaa ccgaccaggc ccaggaggtt ggcgcgtctc gcggtgtccg gggccacctc
     1681 cgggtccagt tcctgctggg caaccgcgat cacccgcatt ccgccgcttg cccaggtgtc
     1741 ggcccgttcc tgtgcccggt cgatgagctc tggcgagtcg accagcaggt caccggccaa
     1801 caggcgctcg ggggctcctt tgtggatgag caggcgccga cctgcagcac cgccgtgggt
     1861 ggtggacatg gctttgcgcg tgctgtcgaa aggcacctcg gccactcgtg ggttggctgc
     1921 ccgcaccgca tcaatgtcca caccgctggc cagcgcggcc accagcaggg cgcgctccgt
     1981 ggggtccccg cggttgttcg aaggttcggc tccaatggtg gcgtcgttgc acagcgtgat
     2041 ggcccgcatc agttggtcgt cctcgacgga gtcggggtgc cagatgtcgg tgaccgtcat
     2101 gctgcccctg gtgagcgttc cggtcttgtc cgtggcgagg acagtcacgg acccgagggt
     2161 ctcgaccgct gacaaggtgc gaaccacggc gtggcgggac gccatccgtc gtgcggccag
     2221 ggcaaggctg acggtgacga ccagaggtaa ggactcgggc accgctgcga cgatcagggc
     2281 gatcgtggtc aggagcatga cttcggggct ctgcccgcgc cacagcccca cgagcagaac
     2341 cactgcgctc agcaggatgg ctgtgatggc cagctggccc gacagccgtg tcatccgacg
     2401 ttggagcggt gtcgctcctg gtgccggagc catcaaggag gcaatgcgac ccacggcgct
     2461 ccgagcgccg gtggcggtga tccgagccct cccgcgcccg tggaggagca gcgtgccgga
     2521 gaacagcgca gtggtgcttt cgaccgttcg agcgggctca gtgtcttcgg tgcggttcgg
     2581 tccgggatcg gcagccaccg ccttgtcgac cggatacgcc tccccggtca tcgttgactc
     2641 atcgacttgc acccccgctc cttcgatgag cactccatcg gcgggaacca ggtcaccttg
     2701 gcgcaacagg acaacgtcgc ccggcaccag ctccacggcg ggaacctcga caggacgacc
     2761 cgcccgcacg gcccatgcct tgggagcgac gaggcgggag agctcgctga ctgagcgatc
     2821 ggcccgcagc tcctggcgca gcccgatgaa ggagttcacc aggaccacga gaccgatcac
     2881 ggcggtgtcg gcgaagtcgc gcgt
//
LOCUS       DASYFY010000647         5992 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1361935, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000647 DASYFY010000000
VERSION     DASYFY010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5992
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1361935"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(220..1212)
                     /locus_tag="VGN19_13155"
     CDS             complement(220..1212)
                     /locus_tag="VGN19_13155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017198519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEV7196879.1"
                     /translation="MANLRAGLIGLGMMGRHHARVLASLDGVDLVAVADAGGDPHRVA
                     AGRTIHATIEELISERLDYCMVAVPTALHEQIGLALAAAGVHTMIEKPLAQDTPSAER
                     LAKAFADQGLVGAVGHIERYNPALQQARARLEAGELGDVYQVATRRQGPFPARIADVG
                     VVKDLGTHDIDLTAWVTQQRYTSVAARTTYKSGRQHEDLVAIVGQLSNGAVTNHLVNW
                     LSPLKERVTIITGERGAFVADTLTADLTFHANGEITTTWDDISRFRGVSEGDTIRYAI
                     AKPEPLRIEHENFRDAVLGKDADIVTMSQGLDVVRVAEACIESATSGRVVTLDG"
     gene            complement(1214..2302)
                     /locus_tag="VGN19_13160"
     CDS             complement(1214..2302)
                     /locus_tag="VGN19_13160"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006593958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEV7196880.1"
                     /translation="MSEFIPPAKPLIGDEEREAVDRVLRSGMLAQGPEVKAFEQEFAE
                     HFGLGRACVAVNSGTSGQHLGLLSSGVKAGDEVIVPSFTFAATANSVALTGATPVFAD
                     ISADDFGLDPASVEASITDRTVGIMPVHLYGHPAKMDELMAIADKHGLQVFEDAAQAH
                     GASLNGTPVGAFGSFGMFSLYPTKNMTSGEGGMVSVATDEIEHLMRLYRNQGMEKQYH
                     NEVVGFNTRMTDIHAAIGREQLKKVDAWTKQRQENAAFLTTNLVGVTPPPVADGAVHV
                     YHQYTVRVPQDRDGLAKALKDEYNVGSGMFYPVPNHRLAPFQVEVDLPETEKAARECL
                     SLPVHPSLSQDDLERIVAAVNTLAKAGA"
     gene            complement(2299..2898)
                     /locus_tag="VGN19_13165"
     CDS             complement(2299..2898)
                     /locus_tag="VGN19_13165"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEV7196881.1"
                     /translation="MVTRIVDSADVAASAQIGDGSSVWHLAQVREDAVLGENCIVGRG
                     AYVGTGVRMGDNCKLQNYALVYEPAVLEDGVFVGPAVVFTNDHYPRAVAPDGSIKTGD
                     DWEAVGVTCRTGASIGARAVCVAPVTIGRWALVAAGSVVISDVPDFALVAGTPARRIS
                     WVGRAGVPLTRDEDGTWVCPATGATYIEDHDRLMEAADS"
     gene            complement(2902..4206)
                     /locus_tag="VGN19_13170"
     CDS             complement(2902..4206)
                     /locus_tag="VGN19_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003804956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEV7196882.1"
                     /translation="MKITVVGLGKIGLPLAVQFAKSGHRVFGADVNQRLVDLVNSGAE
                     PFPGEANLAEYLKEVVSSGELQATTDTASAVADSDVVVVVVPLFVDDQARPDFAWMDS
                     ATGDIARGLKPGTLVIYETTLPVGTTRTRWKPMIEQISGLSEGSDFQLVFSPERVLTG
                     RVFADLRKYPKLVGGLSEAGANAAVDFYQAVLQFDERPDLERGNGVWDLGSAEAAEMA
                     KLAETTYRDVNIALANQFGAFAATHGIDVYQVIEASNSQPYSHIHRPGIAVGGHCIPV
                     YPRLYLWNDPDATVVRAAREANAAMPAYSVGVAAEAAGGSLEGLQVAVLGASYRGGVK
                     ETAFSGVYATVAELERVGARVRVQDPMFTDSELRELGWEPYDIGQAVDVVVVQADHAE
                     YRSLTQADFPSVRVVLDGRRSLDPERFPDVRFLVVGQAERKA"
     gene            complement(4291..5871)
                     /locus_tag="VGN19_13175"
     CDS             complement(4291..5871)
                     /locus_tag="VGN19_13175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196883.1"
                     /translation="MAHADGVYPVKAVLGRFSLVACGTLLLAVVAVAVVAPRASNTPL
                     RQWVVLVAMASLALVGVVLMATVSHDVLELIRRRPQAASWVVTAAGLALCTPVALWGG
                     YRPGWDAGGLLQITGTLGAGRPLNHATLVYLAAYPNNDGALALLLMARRLGAGVGLDA
                     YTMFVLLNCLCLGVVLLSCFAVASRLRGPVAGVAAQLLCIALIGLSPWMSVSYTDVLT
                     TPIPIGAFALVALAAERRQRWARAALVVAALVALGVGYSLKPTLAVATAALGAAGLLV
                     LPGRSPRRLVAGLAVIALGAGVTVASAMASQDGAAQIMAANGVRIDSNHSVPPDRYVL
                     DGLQQGSHGTTKVAYGAYSAAVVSATYGMTTHQMTIYSRRNILLRLHNLGVTGYATFA
                     AKKTAWNWGDGMFYAFGESAKDAKLTSVISHSPPARLLAQVNHSGGQWYPLRAELTQA
                     LWLLVLLVGGVGLLVARPRPGTVLLALAVLGIAAFTTIFQGRSRYLLTFVPVVLTLVS
                     VVAIDPRRLLAPHRLFRP"
BASE COUNT          983 a         2072 c         2041 g          896 t
ORIGIN      
        1 cccgagcgcc accttgccca ggacgccccc gatcagggtg ctgtaggcaa agcgcaccaa
       61 ccccgagacg accatgcccc cggtggacag cgcggtctgg gtgcccaccg tctccagggt
      121 gtcgacggtg acgtccggca gtccgggacg gagctgacgc agcacccatc gggagccgac
      181 caccgagctg ggccgcgcca ctaggctcga ttcccggcgt taaccgtcaa gcgtcacgac
      241 ccggccgctg gtcgccgact cgatgcacgc ctccgcgacc cgcaccacat ccagaccctg
      301 gctcatggtc acgatgtcgg cgtccttgcc gagcacggcg tcgcggaagt tctcgtgctc
      361 gatgcgcagc ggctccggct tggcaatggc gtagcggatg gtgtcaccct cggacacccc
      421 gcggaaccgc gagatgtcgt cccaggtcgt ggtgatctca ccattggcgt ggaacgtcag
      481 atcagccgtc agggtgtcgg cgacgaaggc cccgcgctct ccggtgatga tggtgacccg
      541 ctccttgagc ggcgagagcc agttcacgag gtggttggtg acggcgccat tgctcagctg
      601 ccccacgatc gcgaccaggt cctcgtgctg gcgtccggac ttgtaggtcg tccgagcggc
      661 caccgaggtg taccgctgct gggtgaccca cgcggtgagg tcgatgtcgt gcgtgccgag
      721 gtccttcacg acgcccacgt cggctatccg ggccgggaac gggccctgtc ggcgggtggc
      781 cacctggtac acgtcaccca gctcgccggc ctcgagccgg gcccgggcct gctgcagggc
      841 ggggttgtac cgctcgatgt ggccgacggc tccgacgagg ccctgatcgg cgaacgcctt
      901 ggcgagccgc tcggcggagg gagtgtcctg ggcgagcggc ttctcgatca tggtgtgcac
      961 cccggccgcg gcaagtgcca gaccgatctg ctcgtgcagc gcggtcggca ccgccaccat
     1021 gcagtagtcg agccgctcgc tgatgagctc ctcgatcgtg gcatggatgg tgcgacccgc
     1081 cgcgacccga tgcgggtcgc cgccagcgtc ggcgacggcc accaggtcga ctccgtcgag
     1141 ggaagccagc accctcgcgt ggtggcggcc catcatcccc aggccgatca ggccggcgcg
     1201 caggttggcc atctcaggca cccgccttcg cgagtgtgtt gacggcagcg acgattcgct
     1261 ccaggtcgtc ctgcgacagc gaggggtgca ccggcagcga caggcactcg cgagccgcct
     1321 tctcggtctc cggaaggtcg acctcgacct ggaagggagc cagtcggtgg ttcggcaccg
     1381 gatagaacat gccggagccg acgttgtact cgtccttgag cgccttggcc aggccgtcgc
     1441 ggtcctgcgg cacccggacg gtgtactggt ggtagacgtg caccgcgcca tcggcgaccg
     1501 gcgggggcgt gaccccgacc aggttcgtgg tcaagaaggc ggcgttctcc tggcgctgct
     1561 tggtccaggc gtcgaccttc ttgagctgct cgcgaccgat ggccgcatgg atgtcggtca
     1621 tccgggtgtt aaagccgacg acctcgttgt ggtactgctt ctccatgccc tggttgcgat
     1681 agagccgcat caggtgctcg atctcgtcgg tggcgacgga aaccatgccg ccctcgccgg
     1741 aggtcatgtt cttggtgggg tacagggaga acatcccgaa cgaaccgaac gcccccaccg
     1801 gagtgccgtt cagggacgca ccatgcgcct gggcggcgtc ctcgaacacc tgcaggccgt
     1861 gcttgtcggc gatggccatc agctcgtcca tcttggccgg gtgaccgtag aggtgaaccg
     1921 gcatgatccc caccgtccgg tcggtgatcg acgcctcgac cgatgccggg tccaggccga
     1981 agtcgtccgc gctgatgtcc gcgaacaccg gggtcgcgcc cgtgagggcc accgagttgg
     2041 cggtcgccgc gaaggtgaac gacgggacga tcacctcgtc gccggccttg acgccgctgg
     2101 agagcagccc caggtgctgg ccggaggtgc cggagttgac cgcgacgcag gcccgcccga
     2161 gcccgaagtg ctcggcgaac tcctgctcga acgccttgac ctcagggccc tgcgccagca
     2221 tcccgctgcg cagtacacgg tcgacagcct cgcgctcctc gtcaccgatc agcggcttgg
     2281 cggggggaat gaactcactc atgaatctgc agcctccatc aggcggtcgt ggtcttcgat
     2341 gtacgtcgca cccgtggccg ggcagaccca ggtgccgtcc tcgtcgcggg tcagggggac
     2401 tccggcgcga ccgacccaac tgatccggcg tgccggcgtc cccgccacga gagcgaagtc
     2461 gggcacgtcc gagatgacga cggatcccgc cgcgaccagc gcccatcgcc cgatggtcac
     2521 aggggcgacg cacacggcgc gagctccgat cgacgcgccg gtgcgacagg tgaccccgac
     2581 cgcctcccag tcgtcgccgg tcttgatcga gccgtccggg gcaaccgccc gcgggtagtg
     2641 gtcattggtg aacaccaccg ccgggccgac gaacacgccg tcctcgagca cggccggctc
     2701 gtagaccagg gcatagttct gcagcttgca gttgtcgccc atccgcacgc cggtgccgac
     2761 gtaggctccg cgcccgacga tgcagttctc gccgaggacg gcgtcctcac gcacctgcgc
     2821 caggtgccag accgatgagc cgtcgccgat ctgagcgctc gcggcgacat cagccgagtc
     2881 gacaatgcgc gtcaccattg ctcaggcctt ccgctcggcc tggcccacga ccaggaaacg
     2941 gacgtccggg aaccgctcgg ggtcgaggct gcgacgacca tccagcacca cgcgcaccga
     3001 ggggaagtcg gcctgggtga gcgaccggta ctcggcgtgg tccgcctgaa ccaccacgac
     3061 gtccacggcc tgaccgatgt cgtacggctc ccagccgagc tcccgcagct cgctgtcggt
     3121 gaacatcggg tcctgcacgc ggaccctggc accaacccgc tcgagctctg cgacagtggc
     3181 gtagaccccc gagaacgcgg tctccttgac cccgccgcgg taggacgcgc caagtactgc
     3241 gacctgcagg ccttcgaggc tgccaccggc ggcttccgcc gcaaccccga ccgagtatgc
     3301 cggcatcgcg gcattcgcct cacgcgctgc gcggacgacg gtggcatcgg ggtcgttcca
     3361 cagatagagc cgcgggtaca ccgggatgca gtgcccaccc acggcgatac ctggccggtg
     3421 gatgtggctg tacggctggg agttgctggc ctcgatgacc tggtagacgt cgatcccgtg
     3481 ggtcgcggcg aaggcgccga actggttggc cagcgcgatg ttcacgtctc ggtaggtggt
     3541 ctcggccagc ttggccatct cggccgcttc ggcgctgccg aggtcccaca ccccgttgcc
     3601 gcgctcgagg tccggccgct cgtcgaactg gagcacggcc tggtagaagt ccaccgccgc
     3661 attcgcgccg gcctcggaca acccacccac gagcttgggg tacttgcgca ggtcagcgaa
     3721 gacgcgaccg gtgagcaccc gttcgggcga gaacacgagc tggaagtccg agccctcgga
     3781 cagcccggag atctgttcga tcatgggctt ccaccgggtg cgggttgttc cgaccggcag
     3841 ggtcgtttcg tagatcacca aggtgccggg cttgagccct cgggcgatgt ccccggtggc
     3901 cgagtccatc caggcgaagt cgggacgggc ctggtcgtcc acgaagagcg ggacgacgac
     3961 gacgacgaca tcgctgtcgg cgacggccga cgcggtgtcc gtggtcgcct ggagctcacc
     4021 actggacacc acctccttga ggtactcagc gaggttggct tcgccgggga agggctcggc
     4081 gccgctgttc acgaggtcca ccaggcgctg gttgacgtcg gccccaaaga cccggtgccc
     4141 ggacttggcg aactgcactg ccaggggcag tccgatcttg cccagcccca ctacggtgat
     4201 cttcacaacg ctccttcgct ttcggctcgc cgtcgatcct aaggccttgg ccgcgaagca
     4261 ccgtccgcag ccgtcctgcc cggcgagcgc tcagggccgg aagagccgat gcggcgcaag
     4321 gagccgacgc gggtcgatgg ccacaactga gacgagcgtc agcacgacgg gcacgaaggt
     4381 cagcagatat cgcgaccggc cctggaaaat ggtcgtgaag gcggcaattc cgaggacagc
     4441 cagcgccagc agtaccgttc ccggtcgcgg tcgggcgacc agtaacccca ccccgccgac
     4501 gagcagtacc aggagccaca gcgcctgggt gagctcggcc cgaagcggat accactggcc
     4561 accggaatgg ttcacctgag ccagcagccg tgcgggcggg gagtgcgaga tcacgctcgt
     4621 cagcttggcg tccttggccg actccccgaa cgcgtagaac atgccgtcgc cccagttcca
     4681 cgccgtcttc ttcgcggcga acgtggcgta gccggtgaca ccgaggttgt gcagccgaag
     4741 caggatgttg cgacgggagt agatcgtcat ctgatgggtc gtcatgccgt acgtcgccga
     4801 gaccacggct gccgagtacg cgccgtaggc cactttcgtt gttccgtgcg agccctgctg
     4861 cagaccgtcg aggacgtagc ggtctggcgg taccgagtgg ttggagtcga ttcggacacc
     4921 gttggcagcc atgatctgag ctgccccatc ctgactggcc atggcggagg cgaccgtgac
     4981 gcctgcgccc agagcgatca cggcaaggcc cgccaccagg cggcgtgggg accgacccgg
     5041 cagcaccaga agtccggccg cccccagggc tgcggtcgcc accgcgaggg tgggcttgag
     5101 ggagtacccg acccccagcg cgaccagcgc cgcaaccacc agcgccgccc gtgcccagcg
     5161 ctgtcgacgt tcggccgcca acgcgacgag ggcaaaggcg ccgatgggga tgggggtggt
     5221 gagcacgtcg gtgtacgaga cgctcatcca gggcgacaag ccgatcagcg cgatgcacag
     5281 cagctgggcg gccacgcccg cgacggggcc gcgcagtcgg gaggccacgg cgaagcagga
     5341 cagcagcacg actccgaggc acagacagtt caggagcacg aacatcgtgt aggcgtccag
     5401 gcccacgcct gctcccagac gcctcgccat cagcagcaga gctagagcac catcgttgtt
     5461 gggataggcg gccagataga ccagggtcgc gtggttgaga gggcgccccg cgccgagcgt
     5521 ccccgtgatc tggagaaggc ccccggcgtc ccaaccgggg cggtagccac cccacagggc
     5581 aactggcgtg cacaacgcca gtcccgccgc ggtaaccacc cagctggcgg cctgggggcg
     5641 ccggcggatc agctcgagga cgtcatggga cacggtggcc atcagcacga cgccgacgag
     5701 cgccaggctc gccatcgcga cgaggacgac ccattgccgc aaaggggtgt tggacgcgcg
     5761 cggggcgacc acagcgaccg ccaccacggc gagcaacaac gtcccgcaag ccaccagaga
     5821 aaaccgtccc agcacagcct tcaccgggta gacgccatcc gcatgcgcca ttcctagcac
     5881 gcctgcaccg gcggggcggc ctcgctgctc caccgtgtcc acgggctatt tcaggagttg
     5941 acgggcgatc acgacgcgct ggatctggtt ggtgccctcg tagatctggg tg
//
LOCUS       DASYFY010000648         1599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1624133, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000648 DASYFY010000000
VERSION     DASYFY010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1624133"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1347)
                     /locus_tag="VGN19_13180"
     CDS             complement(<1..1347)
                     /locus_tag="VGN19_13180"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEV7196884.1"
                     /translation="MDKEVPLVDLPAVVAGAVVRRSAELGAVRRDVPKDVSRRMAWVR
                     RYQRAAVAFDILSASAAVVVGLLIWEGTPQLTWRGSVVALALPPVWVTVLALSRGYSR
                     RYIGTTTEEYRTISRAALTIFVLIAMATYLAHFQLARRYVLLVVPLMFVLTMLSRHRL
                     RARLVRRRARGIDVLRTVVIGDTQSVEMTIREIHRATWHEMQVVAACVSDLQTTDESR
                     STVEGVPVFGYPEEALTTVDLLDADVVAVASDRDLSGPSLRRLAWSLEEREVDLVVSP
                     GLLGVAGPRLSIRPAAGMPLLLIERPVRSGARRVVKILVDRCLTAALLVVGVPAMLVI
                     GAAIRLDSTGPVLFRQRRVGARGEEFSMIKFRTMCVDAEDQLDTLERDAGNTVLFKMR
                     SDPRITRVGRVLRRFSLDELPQLFNVLRGEMSLVGPRPPLLREVEDYEPDAARRLRV"
BASE COUNT          294 a          549 c          531 g          225 t
ORIGIN      
        1 aacgcgcagt cgccgggcgg catcgggctc gtagtcctcc acctctcgca gcagcggcgg
       61 tcggggtccc acgagggaca tctccccgcg aaggacgttg aacagctggg gcagctcgtc
      121 gagggagaag cgccggagca cccgcccgac gcgcgtgatc ctggggtcgg agcgcatctt
      181 gaacaacacc gtgttgccgg catcgcgctc gagggtgtcg agctggtcct cggcatcgac
      241 gcacatcgtc ctgaacttga tcatggagaa ctcttcgccg cgagccccca cccgccgctg
      301 gcggaacagc acgggtcccg tcgagtcgag cctgatcgcc gccccgatga cgagcatcgc
      361 gggcaccccc acgacgagca gcgcggccgt caggcagcgg tccaccagga tcttgacgac
      421 gcgccgcgcc cctgacctga caggacgctc gatcagcagc aggggcattc cggctgcggg
      481 gcggatggaa agtcgtgggc cggccacgcc cagaagcccc ggagagacga ccaggtcgac
      541 ctcgcgctcc tccaacgacc aggccagccg gcgcagggac ggacctgata gatcccggtc
      601 gctggccacg gcgaccacgt cggcatccag aaggtcgacg gtggtcagtg cttcctcggg
      661 atagccgaac accgggacac cttcaaccgt cgaccggctc tcgtcggtgg tctgcaggtc
      721 cgagacgcac gctgccacca cctgcatctc gtgccaggtc gcccggtgga tctcccggat
      781 ggtcatctcg accgactggg tgtctccgat gacgaccgtc cggagcacgt cgataccccg
      841 cgcgcggcga cggaccagtc tggcccgcaa cctgtggcgc gacagcatcg tgagcacgaa
      901 catgagcggc accacgagca agacgtatcg acgggccagc tggaagtgcg ccaggtaggt
      961 ggccatcgcg atgaggacga agatagtgag cgcggcccgg ctgatggtgc ggtactcctc
     1021 ggtcgtggtg ccgatgtatc gcctgctgta tccacgggac aacgccagca cggtcaccca
     1081 gactggtggc aacgcgagcg ccacgaccga gcccctccag gtgagctggg gggtgccctc
     1141 ccagatgagc aaaccaacca cgaccgcggc gctggcggaa aggatgtcga aggcaaccgc
     1201 cgcccgctgg taccgacgaa cccatgccat gcgtcgagac acgtccttgg gcacgtcacg
     1261 acggaccgcc cccagctcgg cgctccgtcg aaccacggcg cccgcaacga ctgccggtag
     1321 gtccacgagt ggtacttcct tgtccacgcc acccccctgc atgaggtcct ccgccacttt
     1381 cccccccggg tccgcacttg tgtcttgcag cgaccgtaga cccgttgcca gaccgggcag
     1441 aaggggctga ggagggtggg gtctaaggcg cgaatccacc tgtgcgcata gggaattcgg
     1501 gaactacgca ggacaggtga ggcggagtgg acaggccact acgacgcatg gcgtaggccg
     1561 ctcggccgca tgctgtagac gaacgcggta tcggacctg
//
LOCUS       DASYFY010000649         1959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_888420, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000649 DASYFY010000000
VERSION     DASYFY010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888420"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..836)
                     /locus_tag="VGN19_13185"
     CDS             complement(<1..836)
                     /locus_tag="VGN19_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196885.1"
                     /translation="MSSTQEHLVGLLLGAEGDWPAAFETLAGRLGVITAPDGSSHRLK
                     TERLTIEPFNLRDKPRQDLVIDRLAHWYYHPREWLKKVALMDDVYLLNSPFTFQSMEK
                     HSAYCALLRLGMNVPETVLVPYKNPLDNARWAFTSARYNKSFDLDSIADELGYPMFMK
                     PFDGGAWRGVSMIRDQADLHAAYDDSGEMLMHLQKAVDGFEVFARALTIGPETMVMKF
                     QPDEPMHQRYAVEHGFLSDAIGTEAVTIAQTVNAFFRWEFNSCEMLVKDGVVYPIDYA
                     NA"
     gene            complement(882..1865)
                     /locus_tag="VGN19_13190"
     CDS             complement(882..1865)
                     /locus_tag="VGN19_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEV7196886.1"
                     /translation="MTDQPTTPGLRGAVDLSGLRGTAGAPGPSRPSAAAAHDSAPGRD
                     AAGVPGRSGLVIDGTDATFSEIVNASISVPMVVVLWAAQLPESRDYLDTVVEVARTYG
                     GKLQVVSIDVEANPGLMRAFQVQSVPVTMGLIQQQPVPLFAGIQPAEQLRPVLDEVLT
                     LAVQHGVTGRVELGDEPATTVPDDADQEPPLPPLHQEAYDAIERGDLDAAAAAYRQAV
                     KENPADSEAELGLAQVGLMQRTHGADLPTARAAAAENPDDLGAQTLVADLDVLGGHVE
                     DAFARLIDLVRATSGEEREQVRAHLLGLFAVVGTHDERVRKARTALMSALF"
BASE COUNT          311 a          644 c          682 g          322 t
ORIGIN      
        1 caggcgttgg cgtagtcgat gggatagacc acgccgtcct tgacgagcat ctcgcaggag
       61 ttgaactccc accggaagaa cgcgttcacg gtctgggcga tggtgaccgc ctctgtcccg
      121 atggcgtccg acaggaaccc gtgctccacg gcataccgct ggtgcatcgg ctcgtccggc
      181 tggaacttca tgaccatcgt ctctggaccg atcgtcagcg cgcgggcgaa cacctcgaac
      241 ccgtcgacgg ccttctgcag gtgcatgagc atctcgccgg agtcgtcata ggcggcgtgc
      301 aggtcagcct ggtcccggat catcgagact ccccgccagg ccccgccgtc gaagggcttc
      361 atgaacatcg ggtacccgag ctcgtcggcg atgctgtcca ggtcgaagga cttgttgtac
      421 ctggccgagg tgaaggccca tcgagcgttg tcgagcgggt tcttgtaggg gacgagcacg
      481 gtctcgggaa cgttcatccc caggcggagc aacgcgcagt acgccgagtg cttctccatg
      541 gactggaacg tgaacgggct gttgagcagg tacacgtcgt ccatcagcgc gaccttcttg
      601 agccactcgc gggggtggta gtaccagtgc gcgagccggt cgatgaccag gtcctgccgt
      661 ggcttgtcgc gcaggttgaa cggctcgatg gtgaggcgct cagtcttgag gcggtggctc
      721 gaaccatccg gggcggtgat cacacccagc cggccggcca aggtttcgaa ggccgcgggc
      781 cagtccccct cagcccccag caatagtccg acgaggtgtt cttgggtcga cgacatgaag
      841 ccatcctgtc ggctgagcgc acaccccgaa agtcgtaagg gtcagaaaag tgcgctcatc
      901 agggcggtgc gtgccttgcg aacgcgctcg tcgtgcgtcc cgacgaccgc gaacaagccc
      961 agcagatgcg cccgaacctg ctctcgctcc tcgccggagg tggcgcggac caggtcgatg
     1021 aggcgggcga aggcgtcctc cacgtgaccg ccgagcacgt cgaggtcggc gaccagggtc
     1081 tgcgcgccga ggtcgtcggg gttctcggcg gccgccgcgc gagcggtcgg gaggtcagcg
     1141 ccatgggttc gctgcatcag cccgacctga gcaaggccca gctccgcctc gctgtcggcg
     1201 gggttctcct tcaccgcctg ccggtaagcc gcggccgcgg catcgaggtc accccgctcg
     1261 atggcgtcgt acgcctcttg gtgcaggggc ggcagcggtg gttcctgatc agcgtcatcc
     1321 ggcactgtcg tggccggctc gtcgcccagc tccacgcggc ccgtgacgcc gtgctgcacc
     1381 gccagggtga ggacctcgtc gagcaccggt cgaagctgct cagcaggctg aatgccggca
     1441 aacaagggga ccggctgctg ctggatcagg cccatcgtca cgggaacgct ctgcacctgg
     1501 aaggcgcgca tcaggcctgg gttcgcctcg acatcgatac tgacgacctg gagcttgccg
     1561 ccataggtgc gggccacctc gacgaccgtg tcgaggtagt cccgcgactc ggggagctgg
     1621 gcggcccaga gcaccacgac catggggacg ctgatcgagg cgttgacgat ctccgagaac
     1681 gtagcgtcgg tgccgtcgat gaccaggccg gagcgtcccg gcaccccggc agcatcgcgt
     1741 cccggggcgg aatcgtgggc cgcggcagcg ctcggacggc tcggtccggg agcgcctgcg
     1801 gtgccccgca ggccggacag gtcgacggca ccgcgcaggc cgggcgtggt gggctgatca
     1861 gtcatggtgg gattctccct cacggctacc gggcacgctc aggcgccctt ggcggagacc
     1921 agggtctcgt cgacggcgac cactgcagcc tgtcccttg
//
LOCUS       DASYFY010000650         6058 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1834545, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000650 DASYFY010000000
VERSION     DASYFY010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6058
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1834545"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VGN19_13195"
     CDS             <1..250
                     /locus_tag="VGN19_13195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196887.1"
                     /translation="EKAMQERRVKRGKPVEQFTVKGLDASGNAEAEAAKPTSGQRQQP
                     TRNKKRKSAQAKPPQAAKAAQGAQPSSPITENTPHTDN"
     gene            259..921
                     /locus_tag="VGN19_13200"
     CDS             259..921
                     /locus_tag="VGN19_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="R3H domain-containing nucleic acid-binding
                     protein"
                     /protein_id="HEV7196888.1"
                     /translation="MTEQHDTVVDDATQPAAPSAVSPAATPTPTDAAEPTPVPVTVEG
                     DDAAALAAADEAGTRPTRRAKVADLEREGEVAADFLETLLDIADLDGDIDVDVEGDRA
                     AVSIVDSEDGRVPRRLIGTNGAVLEALQELTRLAVQASTGERSRLMLDVAGHRAERRS
                     ALVEIARAAIDTAKSSGDRVPLEPMTAFERKVVHDEVLAAGLASESEGVEPRRYVVIL
                     PA"
     gene            950..1708
                     /gene="rsmG"
                     /locus_tag="VGN19_13205"
     CDS             950..1708
                     /gene="rsmG"
                     /locus_tag="VGN19_13205"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020141624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEV7196889.1"
                     /translation="MAHHDDADGRDTGQTGVAPVGPLPPAPARAEMVFGAGLPIAERF
                     AAILADTGVSHGLIGPREVPILWERHLLNCAVVHEAFPPSAELVDVGSGAGLPGLALA
                     IARPDLIVHLVEPMLRRTTWLEVTIGELGLDNAFVHRGRAEEFDGVLSTPYATARAVA
                     RIDKLARWTFPLLSEGGTLVALKGSQAAEELAAEERVLRRLGMRESRLGSYGEVVLDV
                     PTVTIELTIGAASGAPRGAREHGNGPRARVRRRS"
     gene            2276..3253
                     /locus_tag="VGN19_13210"
     CDS             2276..3253
                     /locus_tag="VGN19_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011776792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEV7196890.1"
                     /translation="MVKTHADPVSRETREREELVSSLPTGDQDTPLAQAVAEDARKRI
                     SLAGRVFPKPAAPRVLTVANQKGGVGKTTTTVNVAAALALAGLTVLVIDIDPQGNAST
                     AVGIEHHADVTSIYDVLVDGVAIADVVQECPDIPGLWCAPATIDLAGAEIELVSLVAR
                     ETRLSKAIAAYLDGAAHHGKPIPDYVLIDCPPSLGLLTVNAFVAAQEVFIPIQCEYYA
                     LEGLSQLLKNIELIRSHLNPTLHVSTILLTMYDGRTRLSAQVADEVRNHFPEQVLRNT
                     VPRSVRISEAPSHGQTVMTYDPNSSGALSYLGAAAELADRGAASAPAQN"
     gene            3267..4382
                     /locus_tag="VGN19_13215"
     CDS             3267..4382
                     /locus_tag="VGN19_13215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEV7196891.1"
                     /translation="MSEKRRALGRGLGALIPNAPTSPATSRPVDVFFRDQQPNGHTTQ
                     SSGNGSAEPGAADAPVDGAEKASDSGAGEHHAATVGEQNPESDQASQDGLAPVPGASY
                     GDLPVESIRPNPRQPRRVFDEDDMAELVHSIREIGVLQPIVVRPIPADEEGVAPGVMY
                     ELIMGERRWRASQEAGKDTVPAIVKETDDDDLLRDALLENLHRSQLNVLEEAAAYQQL
                     LEDFGCTHDELASRIGRSRPQISNTLRLLKLPPLVARRVAAGVLSAGHARALLSLDDS
                     AGMERLAQRIVAEGLSVRSVEEIVALGGDQEKVAPRRPRAGSRHPQLDDLAARLSDRF
                     DTRVNIALGQRKGKLTVEFASVEDLNRIVDLLGVSRG"
     gene            complement(4466..5644)
                     /locus_tag="VGN19_13220"
     CDS             complement(4466..5644)
                     /locus_tag="VGN19_13220"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEV7196892.1"
                     /translation="MSDSKQGLLGLGSRGPAVADVRTRLASLADDQLPDRGSLLGTDV
                     AVEVFDQGLERAVRAFQQHKGLIVDGVVGVETFSAIDGARWALGDRILRYLPGHLLRG
                     EDVVTLQERLNTLGFAAGRVDGRFGPETERAVRAFQRSYGLPGDGSVGPETLRAFQDL
                     RRSVSGGSATVLRERELIRRSGHSLSGRTIVLDPGHGGSNTGAAAHGLVESQLVMDLA
                     RRIEGRLTAIGVSVVFTRTDSTCPTEDERAALANAAAADLVISLHCDSHDAADASGVA
                     TFFFGRDRKTSWSAVGEHFADLVLRELVARTGLANCRSHGRSWTLLQQTTMPTVRVEA
                     GYLSHPADAARLGDPAFRDTVAEAVLVALQRLYLGDDDTATTGVLRLGDLRAYLAQHA
                     "
     gene            complement(5855..>6058)
                     /locus_tag="VGN19_13225"
     CDS             complement(5855..>6058)
                     /locus_tag="VGN19_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006944697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEV7196893.1"
                     /translation="LEELAVQHADKIDIVKLNTDENLQVSSRYGITGIPTLNVYVGGE
                     VVKTLVGAMPKPKLVRELADYLG"
BASE COUNT         1019 a         2084 c         2091 g          864 t
ORIGIN      
        1 cgagaaggcg atgcaggagc gtcgcgtcaa gcgaggcaag cccgtcgaac agttcaccgt
       61 caagggcttg gacgcgtccg ggaatgccga ggccgaggcc gccaagccca ccagtgggca
      121 gcgtcaacag ccgacgagga acaagaaacg taagagtgct caggcgaagc cgccgcaggc
      181 ggcgaaggcc gcccaaggtg cgcagccttc gagccccatc accgagaaca ctccgcacac
      241 cgacaactga gagccatcat gactgagcag catgacaccg tggtcgatga cgccacgcag
      301 cccgcagccc cctcggctgt ttcccccgcc gccacgccca ccccgactga cgcagccgag
      361 cccacccccg tgccggtcac cgtggagggc gatgacgccg cggcactggc cgctgccgac
      421 gaagcgggca cccgcccgac gcggcgagcc aaggttgccg acctcgagcg tgagggtgag
      481 gtggccgcgg acttcctcga aaccctgctc gacatcgccg acctcgatgg tgacatcgac
      541 gtcgacgtcg aaggggaccg cgccgccgtc tccatcgtcg actccgagga cggccgggta
      601 cctcgccgtc tgatcgggac gaatggggcg gttctcgagg cgctccagga gctgacgcgg
      661 ctggcggtcc aggcaagcac cggtgagcgc agccgactga tgctggatgt ggccggccac
      721 cgggccgaac gccgctcggc cctcgtcgag atcgcccgag cggcgatcga caccgccaag
      781 tcgagcggcg accgggttcc cctggagccc atgaccgcgt tcgagcgcaa ggtggtccac
      841 gacgaggtgc tggctgccgg cctggcctcc gagtccgagg gcgttgagcc ccgtcgctac
      901 gtcgtcatcc tccccgcgtg aggctgtttc acgtgaaacg acgtcgctga tggcgcacca
      961 cgacgacgcc gacgggcgcg acaccggtca gaccggggtc gcgcccgtcg gtcctttgcc
     1021 accagctccc gccagggccg agatggtgtt cggggcaggg ctgccgatcg cggagcgctt
     1081 cgcggccatc ctggccgaca ccggcgtctc ccatggactg atcgggcccc gcgaggtgcc
     1141 gatcctgtgg gagcggcacc tcctgaactg cgcggtggtc cacgaagcct tcccaccctc
     1201 tgcggagctc gtggatgtgg ggtccggggc gggactcccg ggcctcgccc tggccatcgc
     1261 gaggccggac ctcatcgtcc atctggtgga acccatgctt cgacggacca cctggctcga
     1321 ggtcaccatc ggcgagctgg gcttggataa cgcttttgtg caccggggtc gcgcggagga
     1381 gttcgacgga gtcctgtcca ccccctacgc cacggcccga gcggtggcgc ggatagacaa
     1441 gctggcgcgg tggaccttcc ccctgctgtc cgaaggggga accctcgtcg cgctcaaggg
     1501 gagccaggcc gccgaggagc tggctgccga ggagcgcgtg ttgaggcgac tgggtatgcg
     1561 cgagtcgcgc ttggggagct atggagaggt ggttctcgac gttccgaccg tcacgatcga
     1621 gctgaccatc ggagcggctt ctggggcgcc ccgaggggca cgtgagcacg ggaacgggcc
     1681 acgggcgcgc gtgcgtcgcc ggtcctagag ggcgctgacg gcgtcagccc ggccacccac
     1741 agtgcaaggg gtatgccggg ctgcgcctcc cgcgttgtga gggcgccgag ccgtagggtt
     1801 ggatgatgcc catggcgtac gaggtgacct ggtgacggca gcactccaga tcgagcaggg
     1861 gctggggtgg ccgcaccttc ccgcacgtcc aacggaggca cagatggcac cgatcggttg
     1921 gcccaacctg catcgcccca gggccgatgg ggggcagcac ggggagagcc ccaccgacgg
     1981 ctcggcaccg cgagctgaaa gctcggcact gggaggcgcg caggcgcctc ccgtttcacg
     2041 tgaaacacca gcggtggggt cggaagcccg cgtgctggcc caaccgacgg atgccgaaca
     2101 tggggacgcc ccgcacgcgg acgctccgca cgcggacgcc caggacctga tggacccgca
     2161 gcctgaggtc ggacccgcca cgacaacctc gtcacttcca gtcaccgaat cggtttcacg
     2221 tgaaacgccg accgtgacgt cacccgacgc cgcccaagcc gagcacgccg tctccatggt
     2281 gaagacccac gcggacccgg tttcacgtga aacgcgtgaa cgagaagagc tcgtctcgtc
     2341 gttgcccacc ggggatcagg acactccctt ggctcaggcc gtcgcagagg atgcccgcaa
     2401 gcgcatcagc ctggcgggcc gggtcttccc caagccggcg gcgccccgcg tcctcaccgt
     2461 cgcgaaccag aagggcggcg tcggcaagac gacaaccacc gtgaacgtcg ccgcggctct
     2521 cgctctcgcg ggactcacgg tgctcgtcat cgacatcgac ccgcagggca atgccagcac
     2581 ggctgtcgga atcgagcacc acgcggacgt caccagcatc tatgacgtcc tcgtggacgg
     2641 cgtggcgatc gcggacgtgg tgcaggagtg ccccgacatc cccggcctgt ggtgcgcgcc
     2701 ggcgaccatc gacctcgctg gagcggagat cgagctcgtc tcgctggtgg cgcgcgagac
     2761 gcggctgagc aaggccatcg cggcctacct cgatggggcc gcccaccacg gcaagcccat
     2821 cccggactac gtcctgatcg actgccctcc gagcctgggt ctgctgacgg tcaacgcctt
     2881 cgtggccgca caagaggtgt tcatcccgat ccagtgcgag tactacgcgc tggaggggct
     2941 ctcccagctg ctcaagaaca tcgagctgat ccgcagccac ctcaatccga cgctgcatgt
     3001 ctccaccatc ctgttgacga tgtacgacgg ccgaacccgt ttgtcggcgc aggtcgccga
     3061 cgaggtgcgc aaccacttcc ccgagcaggt cctgcgcaac acggtgccac gctcagtacg
     3121 catctccgag gcgccgagcc acggtcagac ggtcatgacg tacgacccga actccagtgg
     3181 cgctctgtcc tacctgggcg cagccgccga acttgccgac cgcggagcag ccagtgctcc
     3241 cgcgcagaac tgagaaggaa gcccgcatga gtgagaagcg tcgcgccctc ggccgaggcc
     3301 tgggagcctt gattcccaac gcaccgacct cgccggccac gagccgaccg gtggacgtgt
     3361 tcttccgcga ccagcagccg aacgggcaca cgacgcagtc gtccgggaat ggctcggccg
     3421 aaccaggcgc agcggacgca ccggttgatg gcgccgaaaa ggcgtctgat tcaggagccg
     3481 gcgagcacca tgccgccaca gttggcgagc agaatcccga gagcgaccag gcgagccaag
     3541 atgggctggc accggttcct ggggcgtcgt acggggatct gcccgtggag tcgatccgtc
     3601 ccaacccgcg tcagccacgc cgagtcttcg atgaagacga catggccgag ctggtgcact
     3661 ccatccggga gatcggggtc ctgcagccca tcgtcgtgcg gccgatcccg gctgacgagg
     3721 agggcgtcgc acctggggtg atgtacgagc tcatcatggg tgagcggcgc tggcgggcgt
     3781 cccaggaggc cggcaaggac accgttccag ccatcgtcaa ggaaaccgac gatgacgacc
     3841 tgctccgcga cgcgcttctg gagaacctcc atcgcagcca gctcaacgtg ctcgaggagg
     3901 ctgcggcata ccagcagctg ctcgaggact tcgggtgcac gcacgacgag ctcgcgagtc
     3961 gcatcgggcg ctcccgtccg cagatctcca acaccctgcg cctgctcaag ctgcccccgc
     4021 tggtcgctcg tcgagtggcg gccggagtgc tgtcagccgg tcacgcccgg gcgctgctgt
     4081 cgctggacga ctcggccggc atggaacgcc tggcccagcg catcgtggcc gaggggctca
     4141 gcgtccgctc ggtcgaggag atcgtggccc tcggaggtga ccaggagaag gttgccccgc
     4201 ggcgcccacg cgctggcagc cggcacccgc agctcgacga tctggctgct cggctctccg
     4261 accgcttcga cacccgagtc aacatcgcgc tcggtcagcg caagggcaag ctgaccgtcg
     4321 agttcgcttc ggtcgaggac ctcaaccgca tcgtggacct actcggggtc tcgcgaggct
     4381 gagcgtgcag tggcgtgaat ccccttgaga gccaacggga ttcacgcctc ggtaggagcc
     4441 ggcgcgtgcc ggtttagcgg gggactcagg cgtgctgggc caggtaggcc cgcaggtcgc
     4501 ccaggcgaag cacgcctgtc gtggccgtgt cgtcgtcgcc gaggtagagg cgctggagag
     4561 cgacgaggac cgcctcggcg acggtgtcgc ggaaggcagg gtcgcctagc cgcgccgcgt
     4621 cggcggggtg ggacagatag cccgcctcga cgcgaacggt cggcatggtg gtctgctgga
     4681 gcagggtcca ggagcgtccg tgggaacgac agttggccag gcccgtgcgc gccacgagct
     4741 cacgcagcac caggtcagcg aaatgctcgc caacggccga ccaggaggtc ttgcggtcgc
     4801 gtccgaagaa gaaggtggca acgccgctgg catctgcggc gtcatgggag tcacagtgca
     4861 acgagatgac cagatccgcg gcagcggcgt tggccaacgc ggcgcgctcg tcctccgtgg
     4921 gacacgtgga gtcagtccgg gtgaagacca ccgagacccc tatggccgtc aggcggcctt
     4981 cgatccgtcg ggcgaggtcc atgacgagct gggactccac caggccgtgg gccgcagccc
     5041 ccgtgttcga cccgccgtgg cccgggtcga gcacgatcgt gcgaccactg agactgtgtc
     5101 cggaacgacg aatgagctcg cgttcgcgca acacggtggc ggaacccccg gacaccgacc
     5161 gacgtaggtc ctggaaggcg cgcaacgtct ccggacccac cgaaccgtcc ccgggcagcc
     5221 cgtacgagcg ctggaaggcc cggaccgccc gctcggtctc ggggccgaac cgaccgtcaa
     5281 cgcgccccgc agcgaagccg agggtgttga gacgctcctg aagggtgacg acgtcctcgc
     5341 cgcgcagcag gtgcccgggc aggtaccgca ggatgcggtc tcccagggcc catcgggccc
     5401 cgtcgatggc ggagaaggtc tcgaccccga cgaccccgtc cacgatgagc cctttgtgct
     5461 gctggaaggc gcgcacggcg cgctcgaggc cttggtcgaa gacctccact gcaacatcgg
     5521 tccccagcag gctgccgcgg tcgggtagct ggtcgtcggc cagcgaggcg agccgtgtcc
     5581 ggacatcggc tacggccggt ccccggctgc cgagcccgag caggccctgc ttgctgtctg
     5641 acactgggcc tcctcgttgc tggtcgaatc gatgtttgtg caggtcagag gggtaagcgc
     5701 cggaatggtg caggccccgc agtcgtccga gcctaggtca gaacggcgct gtgaaccaac
     5761 cgacaggcgc cctcagggtc cccaccacag ggctctgccg gccggaccac gatgggcccg
     5821 accggcagtc tgtgcgggtc tgcgactcga cgactcagcc caggtagtcg gccagctcgc
     5881 gcacgagctt gggcttgggc atcgccccga cgagggtctt gacgacctcc ccgccgacgt
     5941 agacgttgag cgtcgggatg ccagtgatgc cgtagcggct gctgacctgg aggttctcgt
     6001 cggtgttcag cttgacgatg tcgatcttgt cggcgtgctg aaccgcgagc tcctccag
//
LOCUS       DASYFY010000651         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1519036, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000651 DASYFY010000000
VERSION     DASYFY010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1519036"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VGN19_13230"
     CDS             complement(<1..405)
                     /locus_tag="VGN19_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEV7196894.1"
                     /translation="MSSVVSIPGTTVALSTASVYPEGCAAGFAAAARLGYDAVEVMVW
                     TDPVSQEAGALAALAELHGIRVVSVHAPTLLLTQRIWGPDPWTKVDKSVELAQEVGAD
                     TVVLHPPFRWQKEYAGEFVEGVALREHESGIRL"
     gene            complement(429..1355)
                     /locus_tag="VGN19_13235"
     CDS             complement(429..1355)
                     /locus_tag="VGN19_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HEV7196895.1"
                     /translation="MRLGVVDVGSNTVHLLVVDAHRGAQPLPASSHKIELRLSEHVAD
                     DGSIAATGEQALVTFVRECLTVAEDQGVEEVMAFATSAIREAPNGEDVLARVRAETGV
                     GLQVLSGEEEARLTFLAARRWFGWSSGTLLVVDIGGGSLELAAGVDEDPDAAVSLPLG
                     AGRLTRDLLPGNPPGPDVVRAARREIRLRLAGATRPLKKAGSPDRAVGTSKTMRSLAR
                     ALGAAPSSDGPYAVRQLERADLTLLVGRLAQMTAAERAHLPGVSAGRSRQLLAGALVA
                     EAVLDLLGVQRLEICPWALREGVILSRLDAMR"
BASE COUNT          247 a          583 c          538 g          202 t
ORIGIN      
        1 cagccggata ccgctctcgt gctcgcgaag ggccaccccc tcgacgaact cgccggcgta
       61 ctccttctgc cagcggaacg gcgggtgcag gacgaccgtg tcggcgccga cctcctgggc
      121 cagctcgacc gacttgtcca ccttggtcca ggggtccggt ccccagatgc gctgggtcag
      181 cagcagggtc ggcgcatgca ccgacaccac gcgtatgccg tgcagctcag ccagcgcggc
      241 aagcgccccg gcctcctgag agacgggatc ggtccagacc atgacctcca cggcgtcgta
      301 ccccagccgg gcggccgcgg cgaatccggc ggcgcagccc tcgggataga ccgaggcggt
      361 cgacagcgcc acagtggtgc cgggaatgga gaccactgaa gacatgtctc gagactaccg
      421 agggcagctc agcgcatggc gtcgagacgg ctcaggatca cgccctcacg cagcgcccac
      481 ggacagatct ccagccgctg cacacccagc aggtccaaca ccgcctcggc caccagggcg
      541 ccggccagca gctgccggga tcgaccggcc gagactccgg gaagatgggc gcgctcggca
      601 gccgtcatct gggccagccg accgaccagg agagtgaggt cggcgcgctc cagctgccgc
      661 acggcatacg ggccgtcgct gctgggggcc gcgcccaggg cccgcgccag ggaccgcatg
      721 gtcttggagg taccgacggc tcggtcgggg ctccctgcct tcttgagcgg gcgagtggcc
      781 ccggccagcc gcaggcggat ctcgcggcgg gcggctcgca ccacgtccgg gccgggcggg
      841 ttccccggca agaggtcgcg agtcagccgc cccgccccca gcggcagcga gaccgcagcg
      901 tccgggtcct cgtcgacacc cgcagcgagc tctagcgacc cgccaccgat gtcgacgacg
      961 aggagcgtgc cactggacca gccgaaccac cggcgggccg cgaggaacgt caggcgtgcc
     1021 tcctcctcgc cggacagcac ctggagtccc acgcccgtct cggcgcgcac ccgtgccaac
     1081 acgtcctcac cgttgggggc ttctcggatg gcgctggtgg cgaatgccat gacctcctcc
     1141 acgccctggt cctccgccac cgtcaggcac tcgcggacga acgtcaccag cgcctgctcc
     1201 ccggtcgcgg caatgctgcc gtcgtcggca acatgctcgg aaagccgcag ctcgatcttg
     1261 tgcgagctgg cgggcagcgg ctgggcaccg cggtgggcgt cgacgacgag gaggtggacc
     1321 gtgttggagc cgacgtcaac cactccaagg cgcatggagg cacgctatcg ggccgcgcgg
     1381 gtcgcgcggc tgccatatcg gcgcgtgaac ccgagacata ggctggccca cgtgccagag
     1441 acccccctcg acatcgcccg tatctgggtg gagttcgccg acccggcgga cacttcccag
     1501 gcgccacagc ggttccgctg cgacctgacc tggctgacct cgagctggac gtgcatcttc
     1561 ggcagcgggt
//
LOCUS       DASYFY010000652         6480 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1204112, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000652 DASYFY010000000
VERSION     DASYFY010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6480
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1204112"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..522)
                     /locus_tag="VGN19_13240"
     CDS             complement(<1..522)
                     /locus_tag="VGN19_13240"
                     /inference="COORDINATES: protein motif:HMM:NF025590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4333 domain-containing protein"
                     /protein_id="HEV7196896.1"
                     /translation="MSEPFTPPGVQPTPGVGSQPAPHERHPAAAYPMAPTPAGQSWGP
                     PQHPLPPQGYLPPSRRGNGLAITAVVLSAVALLVAIVTAVFVVAGISGGPSPALSGRV
                     TPTGTSVAGSDLQTELKRVITDDGGSVDTITCPDRSQVGQGLVTVCKGSVDGFDWTGI
                     VVFEDDAGTFVINE"
     gene            675..767
                     /locus_tag="VGN19_13245"
     tRNA            675..767
                     /locus_tag="VGN19_13245"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:711..713,aa:Ser,seq:gct)
     gene            complement(847..2421)
                     /locus_tag="VGN19_13250"
     CDS             complement(847..2421)
                     /locus_tag="VGN19_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0070726 - cell wall assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEV7196897.1"
                     /translation="MSERTDGSASAEQPGQPVAHEESTGAAGTAGARGRRSDRHHGTH
                     RHPWLRRAVFGIAAFLVVVLVLAIGVYLKLTGNINRVDISGALGRRPSQAATTDAKTN
                     LGPLNVMVMGSDTRAGEGSAFGSVSGARSDTNLLVHLSADRKSAIVVSIPRDSMTKAP
                     RDCKNKADTVQAGVMRQWNDNFTLGGPACTIRTFEGLTNIYVNHYVVIDFRGFQSMVD
                     ALGGVTVCTPAPINDPLSGLHLPAGRTKLNGVQALGYVRARYTIGDGSDLSRIDRQQA
                     FLASVIQGATQSSLLLRPDRLFEFLDAATKATTTDMGVGEMKDLAESMRNIGLSQIRF
                     VRLPTEPYPADPNRVQWTSSAETLWTAIRGDQPLPGTKAPATSGTPTPSPTTTPPLTV
                     SPANIAVRVTNDSGVPGVAKAASQALGVQGFTIVSYLTGTGPVTHGVLVRYGPGRAES
                     ARTVAAAFPGAQLREDPLLGSTIELSLGLGSPAAVAVSNRLGTQPLPNATVSATPAPS
                     TTPTIKARSANQDICS"
     gene            2586..4502
                     /locus_tag="VGN19_13255"
     CDS             2586..4502
                     /locus_tag="VGN19_13255"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEV7196898.1"
                     /translation="MERRALVGTITVAAVAVVAAGAGLWWYQDSSSRAANQAATAEVQ
                     QFATAWQKRSFTGASLRFAGTTGQAVATAFATATRGLGSGPVSVQAGAVSRQGDRATS
                     TLHVTWTLSGAVVWSYDVPATVVKQAGGWAVQLPTDRSAWNAQLGPKDRLTASRTWGP
                     RGNLLDRSGVPLAPMGKVYPVQIDPTRATPLTATALEAITQDPAGSLVAKLAAAKKAG
                     SQAPIPVVTYRQADFDARRAALDALVGVVYPVREQPLAKTRTFAQPLLGSFGPVSAEL
                     ITSSKGRYAVGDYAGTSGLQGKYDALLGGTPGIKVTSSGAPSKTLFEKAPVAGTDVKT
                     TLDPTVQDAAEAALQSTGAVPSALVAVDVKTGDVMASANSPALGFDRAMTGHYPPGSA
                     FKIVTSYGLLTTGKVTPNTPVTCPQSFVVDGRTYKNYESETLASPTFTTDFAHSCNTA
                     FVQLSTQLADDELNKAATALGLTGWASTLGVGNAFDAKAPVSNGKTDKASGAIGQGRN
                     VVSPLALAVLAANIARGSAIAPALVTTPAPAGADRTPKPLDATAIGQLQGLMGEVVTQ
                     GTGQALIGTPGGTVRGKTGTAEFGSANPPQTHAWFVGYQGNLAFAVLVEVGKSGGTVA
                     APVARAFLTRLAHG"
     gene            complement(4654..4857)
                     /locus_tag="VGN19_13260"
     CDS             complement(4654..4857)
                     /locus_tag="VGN19_13260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014144190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEV7196899.1"
                     /translation="MAQGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAIDSSGYRSLDE
                     AQRVEFEVTQGPKGPQADAVRPI"
     gene            complement(5110..6021)
                     /gene="folP"
                     /locus_tag="VGN19_13265"
     CDS             complement(5110..6021)
                     /gene="folP"
                     /locus_tag="VGN19_13265"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEV7196900.1"
                     /translation="MTEPAPLVLPRTPPLRLRGRTFDAARPAVMGIINRTPDSFFAGN
                     RHADLDSARRALETAVEAGADIVDVGGVRAGQQGEQVSAEEEIDRVVPFLEHARATYP
                     DLVLSLDTWRSEVAAEAGRHGLDLVNDTWAGHDPELVEVAARIGAGVVCSHTGGLPPR
                     TDPVKVSYGPDALDVVRDVLRTLAHGAAAAQQAGIPADRILVDPTLDFGKTTRHSLEV
                     LRHTAEVAALGYPVLQALSRKDFVGESLGLEADDRLEGTLAATAVAAWLGATVFRAHD
                     VRATRRVVDMVAVIRGDRMPRLEVRGV"
     gene            6062..>6480
                     /locus_tag="VGN19_13270"
     CDS             6062..>6480
                     /locus_tag="VGN19_13270"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7196901.1"
                     /translation="MAFDFSLTPAVDDQRRLIADFVAAEVIPLEQQVFRDGLTDGLRV
                     QLQSRAKAAGVFAPQAPRDLGGGGFRFDEAAVLLEEAGYSLLGPIALNCAAPDEGNIH
                     LLHQTGTPEQQERWLLPLVAGEIRSCFSMTEPPPGAGS"
BASE COUNT          992 a         2254 c         2249 g          985 t
ORIGIN      
        1 ctcgttgatg acgaacgtgc ccgcgtcgtc ctcgaacacg acgatccctg tccagtcgaa
       61 gccgtcgacg gagcccttgc agaccgtcac caacccctga cccacctgcg agcgatccgg
      121 gcaggtgatg gtgtcgacgg aaccaccgtc gtcggtgatg acgcgcttca gctcggtctg
      181 caggtccgag ccggccacgc tcgtgccggt cggcgtcacc ctcccggaca acgccggcga
      241 cgggccgccg gagatgccgg ccaccacgaa cactgccgtc acgatcgcca cgagcagcgc
      301 caccgcgctg aggacgactg cggtgatggc caagccgttg ccgcgcctcg acggcggcag
      361 gtacccctgt ggaggcagcg ggtgctgtgg tggaccccag gactgcccgg ccggggtggg
      421 cgccatgggg taggccgcgg ctgggtgccg ctcgtgaggc gccggctggg aaccgacgcc
      481 gggggtcggc tggaccccgg gcggcgtgaa tggctcagac atcatgctcc ttcaggtggt
      541 tgccacagaa tgccgcagtc acgacggttc cgccctcgaa tgcggtgcat cgcacgccgt
      601 caagggaccg cttttgctcc attccgcagg ctccggatac cctgtgcggg ctcggtggtc
      661 agtcggccgg gcatggaggc gtcgcctagt ccggtctatg gcgccgcact gctaatgcgg
      721 tttgggttta tcgcccatcg agggttcaaa tccctccgcc tccgccactg aaggaccccc
      781 acagcgcagt tcgtgcgctg gggggtcttt cgtcgtcgcg gcgagtgcag ctgggttgag
      841 ccgggttcag ctgcagatgt cctggttggc cgaccgcgcc ttgatggtgg gggtggtcga
      901 tggcgccggg gtggcgctga ccgtcgcgtt cggtagcggc tgggtgccca gccggttcga
      961 taccgcgacg gcagccggtg agcccagtcc caggctgagc tcgatggtcg agccgaggag
     1021 cggatcctcg cggagctgcg cgccggggaa ggcggccgca acggtccgag ccgactcggc
     1081 gcggccaggc ccgtagcgca ccagcacccc gtgagtcacc ggaccggtgc ccgtcaggta
     1141 cgacacgatc gtgaacccct gcacgcccag cgcttgagag gccgccttcg ccacccccgg
     1201 cacgcccgag tcgttggtca cccgcaccgc gatgttggcc gggctgacgg tcaacggggg
     1261 tgtggtcgtc ggggatgggg tgggcgtgcc cgaggtggcc ggggccttcg tgccgggaag
     1321 cggctggtcg ccgcgaatgg cggtccagag cgtctcggcg gaggaggtcc actggacccg
     1381 gttggggtcg gccggatagg gctcggtcgg gagtcgcacg aaccggatct ggctcaggcc
     1441 gatgttgcgc atgctctcgg cgaggtcctt catttcgccg acacccatgt cggtggtcgt
     1501 ggccttggtc gccgcgtcaa ggaactcgaa caaccggtcc ggacgcagca ggagcgagga
     1561 ctgcgtggcg ccctggatca ccgacgccag gaacgcctgc tgccggtcga tccggctcag
     1621 gtccgaaccg tcgccgatcg tgtagcgggc ccggacgtag cccagcgcct ggacgccgtt
     1681 gagcttggtc cgcccagccg gcaggtggag tccgctgagc gggtcgttga tcggcgccgg
     1741 ggtgcacacc gtgacgccac ccaacgcgtc caccatggac tggaagccac ggaagtcgat
     1801 cacgacgtag tggttgacgt agatgttcgt cagcccctcg aacgtccgga tcgtgcacgc
     1861 cgggcccccg agggtgaagt tgtcgttcca ctggcgcatc accccggcct gcacggtgtc
     1921 cgccttgttc ttgcagtcgc ggggagcctt ggtcatcgag tcgcggggga tggacaccac
     1981 gatggccgac ttgcggtccg ccgacagatg cacgaggagg ttcgtgtcgg agcgcgcccc
     2041 cgagaccgag ccgaaggccg acccctcgcc cgcacgggtg tcggagccca tcaccatgac
     2101 gttcaggggg cctaggttgg tcttggcgtc tgtggtcgcg gcctgcgagg gacgtcgacc
     2161 gagggcgccc gagatgtcga cccggttgat gttgccggtg agcttgagat acacgccgat
     2221 ggcaagaacg aggacgacga ccagaaacgc tgcaatgccg aagaccgcgc ggcgcagcca
     2281 gggatgccga tgcgtgccgt ggtgacggtc cgaacgtcgg ccccttgccc cggcggtccc
     2341 ggcggccccg gtcgactcct cgtgggcgac gggctgccca ggctgttcgg ccgatgccga
     2401 gccgtcagtg cgctcgctca catgtacctc gctgacccgt tgatgcgtgg ggacgacacc
     2461 atgacgacag acatcgccgc gttgagtgta ggcgggtcac ctatgcaccc ccgtccacgt
     2521 gggcacgagt gcggtctcag caggctgatc cgaccccgaa ccacccggtg aggttggatg
     2581 ggctcatgga acgtcgtgcg ctggtcggga cgatcacggt tgcagccgtc gcggtggtgg
     2641 cggcgggagc cggcctgtgg tggtaccagg actcgtcgtc gcgagccgcc aaccaggctg
     2701 ctaccgccga ggtccagcag ttcgcaaccg cctggcagaa gaggtccttc accggcgcga
     2761 gcctgcggtt cgcaggaacc actgggcaag ccgtggcgac cgcgttcgcg accgccacca
     2821 gggggctggg atcgggcccg gtgtcagtcc aggccggtgc ggtcagtcgc cagggcgacc
     2881 gcgccaccag caccctgcac gtcacctgga cgctgtccgg cgctgtggtc tggtcgtacg
     2941 acgtgccggc aacggtcgtg aagcaggccg gaggatgggc ggttcagctc cccaccgacc
     3001 ggtccgcctg gaacgcccag ctcgggccca aggaccgcct cacggccagc cgcacgtggg
     3061 gtccgcgcgg aaacctgctc gaccggtccg gtgtcccgct cgcgccgatg ggcaaggtgt
     3121 acccggtgca gatcgacccg acgcgcgcga cgccgctgac ggctaccgcc ctggaggcca
     3181 tcacgcagga tccggctggt tccctggtcg ccaagctcgc cgccgcgaag aaggccggca
     3241 gccaggcacc catccccgtg gtgacctacc gccaggcaga cttcgacgcg cgacgggccg
     3301 cgctcgacgc gctcgtgggg gtggtctatc cggtgcgcga gcagcccttg gcgaagacgc
     3361 gaacgttcgc ccagccgttg ctcggctcgt tcggtccagt aagtgccgag ctcatcacct
     3421 cgagcaaggg ccggtatgcc gtcggcgact atgccgggac cagcggactt caggggaagt
     3481 acgacgccct cctcggcggc acccccggca tcaaggtgac ctcgagcgga gcgccgagca
     3541 agaccctttt cgagaaggct cccgttgccg gtaccgacgt caagaccact ctcgatccca
     3601 cggtgcagga cgcggcagag gcggccttgc agagcactgg cgccgtgccg tctgcgctgg
     3661 tcgccgtcga cgtcaaaacc ggtgacgtca tggcttcggc aaactcgccg gcgttggggt
     3721 tcgaccgagc gatgaccggc cactacccgc ccggatcagc cttcaagatc gtcacgtcct
     3781 acgggttgct cacgaccggc aaggtcaccc cgaacacccc ggtgacctgc ccgcagagct
     3841 tcgtggtgga tggccgcacc tacaagaact acgagagcga gacgctcgcg tcgccgacct
     3901 tcaccacgga cttcgcgcat tcgtgcaaca ccgctttcgt ccagctgtcc acccagctcg
     3961 cggacgacga gctcaacaag gcagcaacgg cgcttggcct caccggttgg gccagcacgc
     4021 tcggtgtcgg caacgcgttc gatgccaagg cgccggtcag caacggcaag acggacaagg
     4081 cgtccggcgc catcggtcag gggcgcaacg tggtgtcgcc gctggccctg gctgtgttgg
     4141 ccgcgaatat cgcccgcggc tcagcgatcg ccccggccct ggtcaccacg ccagcgcccg
     4201 caggcgccga ccgcactcca aagccgttgg acgccaccgc gattgggcag ctgcaggggc
     4261 tgatgggcga ggtggtcacg cagggaaccg ggcaggctct gatcggcacg cccggaggca
     4321 cggtccgcgg caagaccggc accgcggagt tcggcagcgc caacccaccg cagacgcacg
     4381 cgtggtttgt cgggtaccag ggcaacctgg ccttcgccgt cctcgtcgag gtgggcaaga
     4441 gcgggggaac cgtcgcggcc ccggtggcgc gcgccttctt gacgcgcctc gcgcacggct
     4501 gagcttgacg cgcctcgcgc acggctgagc ccgacgccca gcgcacggcc caccctgcgc
     4561 gtgatcgcgc tcgcggcata cggacacagc aaggccccca tcacccggtg atgggggcct
     4621 tgtctgaaga ctgagggtta agcagtcctc gggtcagatc gggcgaacgg cgtcagcctg
     4681 ggggcccttc ggtccctggg tgacctcgaa ctccacgcgc tgcgcctcgt ccagcgagcg
     4741 gtagcccgag gagtcgatcg ccgagtagtg gacgaacacg tccggcccgc cgccgtcctg
     4801 ggcgatgaag ccgaagccct tttcagcgtt gaaccactta acggttccct gtgccatggg
     4861 gtaactcttt cctgtgtagc cattgggcac ccagcactgt gcggagcacc cggctgcccc
     4921 acacaacccc aacggacggg accatgcccg gcctcggatg acctgccttc tcaagaaagc
     4981 aaatgcccgc tctgatggtg ctagggcggg cacttcgtcg acctgcgagg aactgcttgt
     5041 tgcaaccgtg acaaacgcta gcacgcagga tcggggtcgt gcctgacgac ttggcggatt
     5101 tctcggaccc taaacgccgc gcacttcgag cctcggcatc cggtctccgc ggatcaccgc
     5161 gaccatgtcc acgacccgtc gagtggcccg aacatcgtgg gcccggaaca ccgtcgcccc
     5221 cagccaggcg gctacggcag tcgcggccag cgtgccttcg agccggtcgt cggcctcgag
     5281 ccccagcgac tctccgacga agtccttacg ggacaacgcc tgcaagaccg ggtacccgag
     5341 cgcggccact tcggcggtgt gccgtagcac ctcgagcgag tgccgcgtcg tcttgccgaa
     5401 gtccagcgtc gggtccacga ggatccgatc cgccggtatg ccggcctgct gcgcggccgc
     5461 cgctccgtgc gccaacgtgc gcagcacgtc gcggaccaca tcgagcgcgt cggggccgta
     5521 gctcaccttg accgggtcgg ttcgcggcgg cagcccgccg gtgtgcgaac agaccacccc
     5581 agcgccgatg cgcgccgcca cctcgaccaa ctccgggtcg tgcccggccc aggtgtcgtt
     5641 caccaggtcg agcccgtgac gcccggcctc ggccgccacc tccgagcgcc aggtgtccag
     5701 gctgaggacc aggtccgggt aggtcgcacg ggcgtgctcg aggaagggga cgacccgatc
     5761 gatctcctcc tcggccgaga cctgctcccc ctgctggccg gcgcgcactc cgccgacgtc
     5821 gacgatgtcg gctccggcct ccactgcggt ctccagcgcc cgacgcgcgg agtccaggtc
     5881 agcatgccgg ttgccggcga agaaggagtc cggcgtccgg ttgatgatgc ccatcaccgc
     5941 cggccgggct gcgtcgaagg tacggccacg cagccgaagc gggggggtgc gcgggaggac
     6001 gagaggggct ggctcggtca cggacacgcg gtcatcctcg cacccgaagt agggtcgggc
     6061 cgtggccttt gacttcagcc tgaccccagc cgttgatgac cagcgtcgcc tgatcgcgga
     6121 cttcgtcgcc gccgaggtga tccccctcga acaacaggtc ttccgcgacg gcctgaccga
     6181 tgggctacgc gtccagctgc agtcgcgcgc gaaggccgct ggggtcttcg ccccgcaggc
     6241 gccccgcgac ctgggcgggg gcgggttccg cttcgacgaa gcggcggtgc tgctcgagga
     6301 ggcggggtac tccctgctcg gcccgatcgc cctcaactgc gccgccccgg acgagggcaa
     6361 catccacctg ctccaccaga ccggcacgcc cgagcagcaa gagcgctggc tgttgcccct
     6421 ggtggccggc gagatccgtt cgtgcttctc catgacggag ccaccgcccg gcgctggctc
//
LOCUS       DASYFY010000653         3589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1781835, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000653 DASYFY010000000
VERSION     DASYFY010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1781835"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1599
                     /locus_tag="VGN19_13275"
     CDS             <1..1599
                     /locus_tag="VGN19_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEV7196902.1"
                     /translation="IHLVSHELTGSVRAPLRVGPALGLARTAGGWLLATGGTAGLTGV
                     LRATPGWHDLPLEVLLFLLVTVMAALVGGLWPALLAALLGSLALNWFFTPPLHTLTIA
                     SAQNLLALLVFLFVAVSVSSVVHVSERRAASARAAQREAAALAATAESLLGERDQLPA
                     LLRQAVEFFALTSAAVVSRPSVRDPWQVVSATSDFDVDAIARASVLAPVDDERSLVLI
                     GRVLSGADRRLVSAFATRAAALLHRDELVEQARRATALAKDNRARTALLAAVSHDLRT
                     PLASIKAAVSGLRQGEVSFTPEDEASLLETIEESTDRLTALVTNLLDMSRLQSGSVTP
                     RLDAVDVATALSVPAAQLPEGDRVRFVVSAGLPPARADSGLLDRVLANVLENALRHSP
                     GRQEVVVHASAVADRIQLRVVDRGVGVPEEAKELIFAPFQRFGDTPKAGTGVGLGLAV
                     ARGLMEAMGGTISAEDTPGGGLTIVIELAQARASTTAPASTASTASTASTAAPAAPAA
                     TPAVPAPPAATADEATVRAERMRS"
     gene            1596..2297
                     /locus_tag="VGN19_13280"
     CDS             1596..2297
                     /locus_tag="VGN19_13280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7196903.1"
                     /translation="MSTILVVDDEPHLVRTLAINLRARDYSVETAGDGRSALLAFHES
                     PPDLVVLDLGLPDLDGVDVLRRVRQVSDVPVIVLSARTDSVDKVEALDEGADDYVTKP
                     FAMDELLARVRVALRRDRESADPALPPFETDHFVLDFAERQALVDGREVRLTPTEWRL
                     LEVLTRVPGHLVSQQELLREVWGPRYGRESNYLRVYANQLRRKLEPDPSRPRYLLTDP
                     GQGYRLIPEPRPQSV"
     gene            complement(2314..3378)
                     /locus_tag="VGN19_13285"
     CDS             complement(2314..3378)
                     /locus_tag="VGN19_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEV7196904.1"
                     /translation="MIAGLAPHSRGRRALEAVVGLGLAAVLLVWGLPRFGHTTWGAVW
                     SILQTVPIPTALLLVCVMITGLYCYTLTLTGSLPGLRHWQALIVNVAGSAVGNLLPGG
                     GAVGLAATYTICRTWGFSRRAISTSAIVSGVWNVLARIALPIFAIVGLVVGTSADVPN
                     GLIDTAVAATITGTLLLGTFVAVLASERAALAVGHGVDKVLGRLFRQRSMSVKALVVD
                     LRARINEVVRHGWLKMTLGLAGYFGAYYLMFLLCMHTTGVHLHYGQLFAAYAIGRLAT
                     AVGVTPGGLGVTESVTVAALVAWGAGHPESVAGAVLFSVFTHVLEVPLGALGWLAWSL
                     SPKVEVPEGNTLGQPSESLG"
     gene            complement(3375..>3589)
                     /locus_tag="VGN19_13290"
     CDS             complement(3375..>3589)
                     /locus_tag="VGN19_13290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEV7196905.1"
                     /translation="NVRRYAAAKRASMRAHASQASAEDGADRTLAAFLRIPRPLFDLV
                     FGREWFIDPARPPGQPVARDIFEGLA"
BASE COUNT          526 a         1271 c         1268 g          524 t
ORIGIN      
        1 atccacctcg tgagccacga gctcacgggg agcgtccgtg cgccgctgcg tgtcggaccc
       61 gctttggggc tggcgcgcac agccggcggc tggctcctgg cgaccggagg caccgccgga
      121 ctcaccggcg tcctgcgggc cacgccgggg tggcacgacc tgccgctcga ggtgctcctc
      181 ttcctgctgg tgacggtgat ggccgccttg gtcggcggac tgtggccggc gctgctcgcg
      241 gcgctgttgg gcagcctggc gctcaactgg ttcttcacgc cgccgctgca caccctcacg
      301 atcgccagtg cgcagaatct gttggcgctg ctggtgtttc tcttcgtggc ggtctcggtg
      361 tcctccgtgg tccatgtcag cgaacgacgt gccgcgtcgg cgcgagcggc gcaacgtgag
      421 gccgctgcgc tggccgcgac ggcggagtcg ttgctgggcg agagagacca gctgcccgcc
      481 ctgttgcgtc aggccgtcga gttcttcgcc ctcaccagcg ctgccgtggt cagcagaccc
      541 agcgtgcgag acccgtggca ggtggtgtct gcgacaagtg atttcgacgt cgacgcgatc
      601 gcccgggcct ccgtgctggc gcccgtcgac gacgaacgtt cgctcgtcct gatcggacgc
      661 gtgctcagtg gcgccgaccg gcgactcgtc tccgccttcg ccactcgggc cgccgcactg
      721 ctccatcgcg acgagctggt cgagcaggcc cgccgggcta cggcgctggc caaggacaac
      781 cgtgcccgga ccgcgctgct cgcagccgtc tcgcacgacc tgcgaacccc gttggccagc
      841 atcaaggccg ccgtctccgg gctgcgccag ggggaggtgt ccttcacccc ggaggatgag
      901 gcgtcgctgc tggagaccat cgaggagtcg acggaccggc tgaccgcact cgtgacgaac
      961 ctgctcgata tgtcgcgcct gcagagcggc tcggtgaccc caagactgga cgccgtcgat
     1021 gtggcgaccg ccctctcggt tccggcggcc cagctgcccg agggagaccg ggtgcgcttc
     1081 gtcgtctcag ccggccttcc tccggctcgg gccgactccg ggctgctcga ccgggtgctc
     1141 gccaacgtcc tcgagaacgc cctgcgccac tcgcccggcc gtcaggaggt cgtggtccac
     1201 gcttccgcgg tggccgatcg catccagctt cgggtggtgg atcgtggggt tggggtgccc
     1261 gaggaggcca aggagctgat cttcgctccg ttccagcgct tcggggatac gccgaaggca
     1321 gggaccggcg tcgggctggg cctggcggtc gcccgggggt tgatggaggc gatgggcggc
     1381 accatctccg ccgaggacac tccggggggc ggtctgacga tcgtcatcga gctcgctcaa
     1441 gcgcgggcct ccacgaccgc tcctgcctcg acggcctcga cggcctcgac ggcctcgaca
     1501 gccgcgccgg ccgcgccggc cgcaacgccc gctgtgcccg cgccgccggc cgcgaccgcc
     1561 gacgaagcca cggtccgggc tgagaggatg cgctcgtgag caccattctc gtcgtggacg
     1621 acgagccgca cctggttcgc accctcgcca tcaacctgcg ggcgcgggac tactccgtgg
     1681 agacggccgg tgatggacgg tcagcactgt tggcctttca cgagtcccca ccagatctcg
     1741 tggtcctcga cctgggcctg cccgacctcg acggcgtcga cgtgttgcgc cgcgtccggc
     1801 aggtctccga tgtcccggtc atcgtgctgt ccgcgcgaac cgactcggtc gacaaggtcg
     1861 aggcgctgga cgagggggcg gacgactacg tcaccaaacc gttcgcgatg gacgagctgc
     1921 tggcccgggt ccgggtggcg ctgaggcgtg atcgcgagtc ggctgaccct gcgctcccac
     1981 cgtttgagac cgatcatttt gtcctggact tcgcggagcg gcaggcgctg gtcgacggcc
     2041 gggaagtgcg gctgaccccg acggagtggc ggctgctcga ggtgctgacg cgggtcccgg
     2101 ggcatctggt gtcccaacag gagctgctcc gcgaggtgtg gggaccccgg tacggtcgcg
     2161 agtcgaacta ccttcgggtg tatgcgaacc agctgcggcg caagctcgag ccggacccga
     2221 gccgtccgcg gtacctgctg accgacccag gacagggcta ccgcctgatc cccgaaccgc
     2281 gcccccagtc agtctgaccg tgggaggacg gcgtcagccg agggactcgg agggctgacc
     2341 gagggtgttg ccttcgggga cctccacctt ggggctcagc gaccaggcca accatcccag
     2401 ggcgcccagc ggcacctcca gcacatgagt gaacacggag aagagcacgg ccccggccac
     2461 cgactcgggg tgcccggctc cccaggccac cagcgcggcc accgtcaccg actccgtcac
     2521 ccccaggccc ccgggggtga cccccaccgc ggtggccagc cgaccgatcg cgtatgccgc
     2581 gaagagctgt ccgtagtgca ggtgcacccc ggtggtgtgc atgcagagca ggaacatcag
     2641 gtagtaggcg ccgaagtatc cggccaggcc cagcgtcatc ttcagccagc cgtggcgcac
     2701 cacctcgttg attcgggctc ggagatcgac gacgagcgcc ttgacgctca tggaccgctg
     2761 ccggaagagc cgtccgagca ccttgtcgac accgtgtccc acggccagcg cggcccgctc
     2821 ggaggccagg acggcgacga aggtgcccag caacagggtc cccgtgatgg tggcggcgac
     2881 ggcggtgtcg atgagcccgt tcgggacgtc agcgctggtc cccaccacca gaccgacgat
     2941 ggcgaagatc ggtagggcga tgcgggccag gacgttccag acgcctgaca cgatggccga
     3001 cgtcgagatg gctcgccgtg agaagcccca ggtccggcag atcgtgtagg tcgccgccag
     3061 gccgaccgcg ccaccgcccg gcagaaggtt gcccacggcc gacccggcca cgttcacgat
     3121 cagggcctgc cagtgccgca gccccggaag cgaaccggtg agcgtgagcg tgtagcagta
     3181 caaacccgtg atcatgacgc agaccagcag cagggccgtc ggtatcggga ccgtctggag
     3241 gatgctccac acggcgcccc aggtggtgtg gccgaaccgg ggcagacccc agaccagcag
     3301 caccgccgcc agcccgagcc cgacgacggc ctcgagcgcc cgtcgtccgc gggagtgcgg
     3361 cgccagcccc gcgatcacgc cagcccctcg aagatgtcgc gggcgaccgg ctgaccgggt
     3421 ggccgcgcgg ggtcgatgaa ccactcgcga ccgaacacca ggtcgaacaa cgggcgcggg
     3481 atccgcagga aggcagccag cgtccggtcc gcgccatcct cggcactggc ctgcgaggcg
     3541 tgggcgcgca tggaggcgcg cttggccgcg gcataccggc gaacgttga
//
LOCUS       DASYFY010000654         4152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_99786, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000654 DASYFY010000000
VERSION     DASYFY010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99786"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VGN19_13295"
     CDS             <1..261
                     /locus_tag="VGN19_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7196906.1"
                     /translation="RRFDPQAVRQLLEDTDRDVSIGGPTLAAEALRAGLVDQVSLYVT
                     PVSVGGGTPALPLGSRFDLRLREERAVGDVIVLRYEVGRVLG"
     gene            complement(258..704)
                     /locus_tag="VGN19_13300"
     CDS             complement(258..704)
                     /locus_tag="VGN19_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEV7196907.1"
                     /translation="MTEETGGTGLGHRSISMERVAKGVFDVTNVRGGTIRIGGGDGPE
                     FTPVELLLTAIAGCTAVDVDFITVKRAEPETFTVSASGEKLKDAHGNHMGDLQVSFSV
                     TFPVGEAGDRAREMLPKALAMSHDRLCTVSRTVELGTPVDSRLATD"
     gene            complement(704..1243)
                     /locus_tag="VGN19_13305"
     CDS             complement(704..1243)
                     /locus_tag="VGN19_13305"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEV7196908.1"
                     /translation="MPGYVAFLRAVNVGKRQLKMAEAREVLQDSGFCDVETYIQTGNV
                     FVSTPLRSTAKVEAAMGGALSHHAGFDVVAIVRTPTDLSALLAAVDGIPEEVPDETSR
                     YVSLCLREPAEARVAELHGLRTPGERATVIGKDVLMEFAVPFNEATLTGARLEKILGV
                     PGTARNLTVLRALTQKWGA"
     gene            complement(1243..2088)
                     /locus_tag="VGN19_13310"
     CDS             complement(1243..2088)
                     /locus_tag="VGN19_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEV7196909.1"
                     /translation="MRLRYRLVNVFAMPENVFSGNPLCVFEDGSELQQEQMQALALQF
                     NLSETSFIVPPERGDEMGVRIFTPRYEMAFAGHPTLGTAAVVRALGRAGDTLRLSMPA
                     GVIPVEASGDLWTLTALPGTVGTEYPLEVLAASVGLQAKDLVAPVQQVSTGSAQVIAQ
                     TRSVAALSRAVGDAALMRRYAGMGTKGGETLVYLWCETGDGTIEARALFTQGAAAVED
                     PATGSACSNLGVWLAAQGRSGRWVVNQGAMVGRPSTLHLSVDAGGAVQVGGLVTEIGS
                     GEVVL"
     gene            2114..2755
                     /locus_tag="VGN19_13315"
     CDS             2114..2755
                     /locus_tag="VGN19_13315"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEV7196910.1"
                     /translation="MTSPHLPAAPEVPPGRLVLLRHGETEWSKSGRHTGLTDLPLTPH
                     GEQLAEAAGSLLHGYRFTLTLCSPLRRARRTAELAGLTADVDADLLEWDYGGYEGLTT
                     TQIRERLGYDWTVFANGVPPGATPGETVEEVAARASRVVRRALVAMAHGDVALVGHGH
                     CLRVLTSVFLRQEPRLGAQLLLDAGSVSVLQFDRGVAAIRVWNHGPAVTATGH"
     gene            complement(2784..3419)
                     /locus_tag="VGN19_13320"
     CDS             complement(2784..3419)
                     /locus_tag="VGN19_13320"
                     /inference="COORDINATES: protein motif:HMM:NF020387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES domain-containing protein"
                     /protein_id="HEV7196911.1"
                     /translation="MADRERVAQERPTGSLEGFPSLVLGRETALFRAHSIHRGPWWFG
                     SDASGRFDLPAPRGTCYLALDPESAVRERLGPVLGGRSQLPESTLIDVVVSSLTLPRP
                     RPVADVQSRRAATFGVTRELETMVPYAVPQAWAQALAQARFEGVRYGPRFTPGRASAV
                     ALFGEAGDAPWPRDPAPLPAQEVVADLRLWPTPRRNDLTVVKPPRTRTVRS"
     gene            complement(3428..3973)
                     /locus_tag="VGN19_13325"
     CDS             complement(3428..3973)
                     /locus_tag="VGN19_13325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196912.1"
                     /translation="MSSKTRSAAAVDALAAAVRDRVVAREAELREQGRLLDLSDIEGL
                     ADRMLAALPTVHPLDEPLGPFYDTAGLVTWLGISRQAVFDRVRRGTLLACRTADGHLV
                     YPSLQFGRAGQVRPGVQEAVGAFVRRGVDGWTIGTWLTAPSEVFGGQSAVDYLVVHRS
                     SSTAVRWVAQSAAQDAARWAA"
BASE COUNT          643 a         1481 c         1405 g          623 t
ORIGIN      
        1 cgacgcttcg acccgcaggc cgttcggcag ctcttggagg acactgaccg cgacgtgagc
       61 atcggcggcc caaccctggc ggccgaggcg ctacgcgccg gactggtgga ccaggtctcg
      121 ctgtacgtga cgccggtcag cgtgggcgga gggaccccgg cgttgccgtt gggctcgagg
      181 ttcgacctgc gcctgcggga ggaacgggcc gtcggggacg tgatcgtcct gcgctacgag
      241 gtcgggcgag ttctgggcta gtcggtggcc agccggctgt cgaccggcgt cccgagctcc
      301 acggtccggc tgaccgtgca gagccggtcg tgcgacatcg cgagggcctt gggcagcatc
      361 tcgcgggccc ggtcgcccgc ctcgcccact gggaaggtca ccgagaagct cacctgcagg
      421 tcgcccatgt ggttgccgtg cgcgtccttg agcttctcgc cggacgcgga cacggtgaac
      481 gtctccggct cggcacgctt gaccgtgatg aagtcgacgt cgacggcggt gcagcccgcg
      541 atggcggtca gcagcagctc gaccggggtg aactcgggtc cgtcgccacc gccgatccgg
      601 atcgtgccgc ctcgcacgtt cgtcacgtcg aagactccct tggcgacgcg ctccatgctg
      661 atggagcggt gccccaggcc ggttccgccg gtctcttcgg tcatcaagct ccccatttct
      721 gtgtcaaggc gcgcaggacg gtgaggtttc gggctgtgcc cggcacaccc aggatcttct
      781 caaggcgcgc gccggtcagc gtggcttcgt tgaaaggcac cgcgaactcc atcaggacat
      841 ctttgccgat cactgtggcc cgctcccccg gggttcgcag cccatggagc tctgccacgc
      901 gcgcctcggc tggctccctg aggcacaggc tgacataacg actggtttcg tccggcacct
      961 cctccggtat gccgtcgacc gcggcgagca gggccgacag gtctgtgggc gtccggacga
     1021 tggcgacgac gtcgaaaccg gcatggtggc tgagtgcgcc gcccatcgcg gcctccacct
     1081 tggcagtgct gcgcagaggt gtggagacga agacgttgcc cgtctggatg taggtctcga
     1141 cgtcacagaa tccgctgtcc tgcaacactt ctcgcgcctc ggccatcttg agctgacgct
     1201 tgccgacgtt caccgcacgc aggaaggcga cgtagcccgg catcagagga cgacctctcc
     1261 ggagccgatc tcggtcacca gaccccccac ctgcaccgcc ccgcccgcat cgaccgagag
     1321 gtgcaacgtc gaaggacgtc cgaccatcgc gccctggttc accacccacc gccccgaccg
     1381 gccctgcgcc gcgagccaga ccccgaggtt cgagcaggcc gacccggtgg cgggatcctc
     1441 gacggccgcg gcgccttgcg tgaacagggc gcgcgcttcg atagtcccgt cgccggtctc
     1501 gcaccacagg tagaccaacg tctcccctcc cttggtcccc atcccggcat acctgcgcat
     1561 cagggcagcg tcacccaccg cccgactcag ggcggcgacc gaacgcgtct gcgcgatcac
     1621 ttgggcactt cctgtgctca cctgttgaac cggggcgacg aggtccttcg cctgaaggcc
     1681 cacggaagcg gccaggactt ccaacgggta ctccgtgccg accgtgcctg gcaacgccgt
     1741 gagggtccag aggtcgcctg aggcctccac cgggatgacg ccggccggca tcgacaggcg
     1801 cagagtgtca ccggctcgac cgagggcccg cacgaccgcc gccgtcccga gcgtggggtg
     1861 gccggcgaag gccatctcgt acctgggcgt gaagatccgc acccccatct cgtcgccccg
     1921 ctcgggcggc acgatgaaag aggtctcgga gaggttgaac tgcagcgcca aggcctgcat
     1981 ctgctcctgc tgcagctccg agccatcctc gaacacgcac agggggttgc ccgagaacac
     2041 gttctccggc atcgcgaaca cgttgaccag tcggtaccgc agcctcatgg gcccactctg
     2101 ccatgctgtg ccggtgacct ccccgcatct gccggctgcg ccagaagtgc caccagggcg
     2161 tctcgtcctg ctgcgccatg gcgagaccga gtggtcgaag tctgggcggc acacgggtct
     2221 gaccgacctc ccactgacgc cgcacggcga gcagctcgct gaggctgccg gctcgctgct
     2281 gcacggctac cggttcacgc tgaccctctg ctcgcctctg cggagggcgc gcaggaccgc
     2341 tgagctggcc ggactgaccg cagacgtgga cgccgacctc ttggagtggg actacggcgg
     2401 ttacgagggc ctgacgacaa cgcagatccg tgagcgactg ggttacgact ggacggtgtt
     2461 cgccaacggg gtgcccccgg gtgccacgcc gggtgagacg gtcgaagagg tggccgcccg
     2521 cgcctcacga gtcgtccgac gtgccttggt cgccatggca cacggagatg tggcgctcgt
     2581 gggacacggt cactgcctgc gggtcctgac cagcgtcttc ctccgtcagg agccacgctt
     2641 gggcgcccag cttctcttgg acgccggttc ggtgagcgtg ctccagttcg accgtggggt
     2701 ggcagccatc cgggtctgga accacgggcc ggcagtcacc gcgaccggcc attgatcgtc
     2761 ggccgctgac gccgctgagc ccctcagctg cgaaccgtac gggtccgcgg gggtttgacc
     2821 acggtgaggt cgttgcggcg tggtgtcggc cagaggcgaa ggtcggcgac gacctcctgg
     2881 gccgggagtg gggcgggatc cctgggccat ggagcgtccc ccgcctcccc gaacagcgcc
     2941 accgcgctcg cccggcctgg agtgaaccgc ggaccgtacc ggacgccctc gaagcgcgcc
     3001 tgagccaacg cctgcgccca ggcctgaggg acggcatacg gcaccatggt ctccagctca
     3061 cgggtcacgc cgaaggtggc cgcccgcctc gactgcacgt cggccaccgg ccggggacgc
     3121 ggcagcgtca ggctcgagac cacgacgtcg atgagggtgg attcgggcag ctgagagcgc
     3181 ccacccagca ccggccccag ccgctcgcgg acagcggact ccgggtcgag cgccaggtag
     3241 caggtgccgc gtggggctgg aaggtcgaag cgaccgcttg cgtcgctgcc gaaccaccac
     3301 ggcccccgat gtatcgaatg ggcccggaac agagcagtct cccgaccgag gaccagcgag
     3361 gggaagccct cgagcgaccc ggtcggtcgt tcctgcgcaa ctcgctcacg gtcagccact
     3421 ggcagaacta tgccgcccac cgcgcggcgt cctgcgcggc actttgcgcc acccaacgca
     3481 ctgcggtcga tgacgaacga tggaccacga ggtagtccac cgcgctctgg ccaccaaaga
     3541 cctccgaggg cgcggtgagc caggtcccga tggtccagcc gtccacaccc cggcggacga
     3601 acgcgcccac cgcctcctgc acccctgggc gcacctggcc ggcacgaccg aactgcagcg
     3661 acgggtagac gaggtggccg tcggccgtcc ggcaggccag cagggtcccc cgccgaactc
     3721 ggtcgaacac cgcctggcgg gagatcccca gccacgtcac caggccggcc gtgtcataga
     3781 agggtcccag tggctcgtcg agcgggtgca cggtcggcaa cgccgccagc atcctgtccg
     3841 cgaggccctc gatgtcggac aggtcgagca gccgaccctg ctcgcgtagc tcggcttctc
     3901 gcgccaccac gcggtcgcgc accgcggcag ccaaggcgtc caccgctgcg gcagaacggg
     3961 tcttggaact catcggactc ctcctctccg tcaagggtgt caagggctga tctccctcag
     4021 ggtacgtcac acccacgaca gcgggacgtt gacggggttg cggcgactgg ggcgactggg
     4081 gcgactgagg cgcctacagc aggggccagg tatgcaccgg ctcattgctg tgcatgtgcg
     4141 cggcatacag ct
//
LOCUS       DASYFY010000655         2433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_467154, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000655 DASYFY010000000
VERSION     DASYFY010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467154"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1003..1398
                     /locus_tag="VGN19_13330"
     CDS             1003..1398
                     /locus_tag="VGN19_13330"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEV7196913.1"
                     /translation="MSEDREALAALARQMTVALDSADVAGFEGLLDPNVRWGAPDDDT
                     PSCQNRNQVLAWYRRGREAGVRATVTEVVLADDALLVGLRVVGNEDAAGQGGEALRWQ
                     VLSVAGGRVVDIRGFDDRVAALQRAGLQP"
     gene            complement(1662..1916)
                     /locus_tag="VGN19_13335"
     CDS             complement(1662..1916)
                     /locus_tag="VGN19_13335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196914.1"
                     /translation="MPLRSLRRPGEEVEVHVAHELSVLLGEAVERTVKECDLALALFQ
                     LVAVAAEDVDHGRPATVAARLDRSSVPRIGPQSSTGVVFQ"
     gene            complement(2180..>2433)
                     /locus_tag="VGN19_13340"
     CDS             complement(2180..>2433)
                     /locus_tag="VGN19_13340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018187712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cobalt transporter"
                     /protein_id="HEV7196915.1"
                     /translation="VMFTLAAIKHRTAQPLASEPLAAEASMTFLDGCLCLGILSALAV
                     NIAFGWWWADGLAALAIAGFAAREGIESLQEAAAEGAAS"
BASE COUNT          417 a          862 c          795 g          359 t
ORIGIN      
        1 atctgcgagg tgtcaccggg cgtggtcagg cacgcggtgg cggcagtcgc gacgaggagc
       61 agggtcagag cgagaccgag gaagcggcgc atgagggtcc tctcgggccg tgggggccgt
      121 gcggcgtggc ccgacgatgg ctccatcctt gcgcccacat gtaagggatc tgtgagctgc
      181 cggcaacggg ccgactcgac ggctcgccgg ccgttccggc cgtcagcatt tctccacctg
      241 gcgaaccacg ccaccgcatc gagaggatga ggacgccggc cacgggcgca cgtcctggac
      301 cacccgacac ttgcgcacgc aacgggagtc acatcaggag tcaacctgga acgacctgca
      361 cgctcccccg ccctctcggc ggaatgttcg aaacggattc tggctgttca gcggcctgca
      421 gcggtctggg cggagcgttc ggttcccaca attaatccgc aggttccggg ttcgaatccc
      481 ggggggcgca ccactgaagg atgccgaagg gcaggtcagg gtgcgtttcg ctcgcactca
      541 ctcctcgtcg gcagggtgtc acgccgggtg cgctagacac ctccgctaga cagccggacg
      601 acacggtccc cgcgcgagac agctcgcggg gactagtcca tccagggtcg cgctggcgct
      661 cgcgtggatc tgcctggaga tgccggtcgg ccacttcgca gtgcccccgg cccggcgccg
      721 gccacggtca cctccacacc cacctgccgc ttcgccacga acaccgccac tgccacgacg
      781 agccgcacca cgcccacctc cacgacctac ccgtcaccgg ctggcactcc cacccccaca
      841 cccacgagcc catcacccac acccaccccc acgacagcga cctgcaccac cgccaccccc
      901 gctgaccagg cagagcgata tggggcaggg ctctggagag gccgacaggc tgcgggcctc
      961 gtaagcttcg gtgaccggat cgaggctgag acggaggccc ggatgtccga agatcgagag
     1021 gctctggccg cccttgccag gcagatgacg gtggccctcg actcagcgga cgtggcgggg
     1081 ttcgaaggtc tgctggaccc gaatgtgcga tggggcgcac ctgacgacga caccccgagc
     1141 tgccagaacc gcaatcaggt cctggcctgg taccggcgag ggcgcgaagc cggtgtccgg
     1201 gcgacggtga ccgaggtcgt cctcgctgac gacgctctgc tcgtaggttt gagagtcgtc
     1261 ggcaacgaag acgccgccgg gcagggcgga gaggcgctca ggtggcaagt actcagcgtg
     1321 gcgggaggcc gtgtcgtcga cattcgaggt ttcgacgatc gcgtcgccgc actgcagcgg
     1381 gctggtctgc agccgtgatg catgtcgagg tccagtatgt cgccgattgc cctaacgccg
     1441 cagcggtcat gcagcggatg aaggagctgg cgcacgcacg cgccgacctc acgctcgccc
     1501 tggtcgaagt gaagccgggt tggccagttc cgaccgattt cgccggttcg cccacggttg
     1561 ctcatcgacg gcacgaaccc gttcggccgc gcgcgcttgg acgccccggc atgcgcgctc
     1621 catccgccaa ccgtcgacca ggtcgaggcc gctgcggcac ctcactgaaa cacaactccg
     1681 gtgctcgatt ggggcccgat gcgcggcacg ctgctgcggt cgagccgggc cgcgacggtc
     1741 gcgggtcggc cgtggtcgac gtcctcggcc gcaacggcta cgagctggaa cagcgcgagg
     1801 gcgagatcgc actccttaac tgtccgttcc accgcctcgc cgagcaacac cgagagctcg
     1861 tgtgcgacat gaacctcgac ctcctcaccg ggtcgtcgaa gggatcggag cggcacccga
     1921 gttcacggcc cggctcgcgc ccgaagccgg ctactgctgc gtacgcctcg cggttcgtcc
     1981 accaccgtca gagcatccac acgggtagac ggccacgtag cccgtcacgc cggacagaga
     2041 ggcttaggac caccggtcgc gagacctcga ggtgcttgcc cacggcgggc aggtgttcca
     2101 gctgcagcac agacaaaccc agcgaggtca cgtcgatctc ggtggccccg atgctcctgg
     2161 gcgcctccgg accttcactt catgaggctg ctccttccgc tgccgcctcc tggagcgatt
     2221 cgatgccctc gcgcgccgcg aaccctgcga tcgccaacgc tgccagaccg tcagcccacc
     2281 accacccgaa ggcaatgttc accgcgagcg ccgacaggat gcccagacac aagcagccat
     2341 cgaggaaggt catcgacgct tcggctgcca atggctcgct tgccagaggc tgtgcagttc
     2401 ggtgcttgat ggcggccaac gtgaacatca ccg
//
LOCUS       DASYFY010000656         1646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1571453, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000656 DASYFY010000000
VERSION     DASYFY010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1571453"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1495)
                     /locus_tag="VGN19_13345"
     CDS             complement(<1..1495)
                     /locus_tag="VGN19_13345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEV7196916.1"
                     /translation="MTRRRNVLVAAAVVLATGVAGCSSHSGPGADQAVSSRTSTPQPS
                     VARTPPPGATALARFYGQTLAWHGCGDAQCAGLSVPLDYAQPAGPTIIVQVLRMTATR
                     PGERIGSLVVNPGGPGGSGVDYARAADQIVRAPVRQRFDIVGFDPRGVQRSHPVDCLS
                     DPQMDAFLGQDPTPDTPAEEQAFAASGAQFAQGCVQRTGPLIGHISTEDTARDLDILR
                     SALGDAKLNYLGKSYGTLIGSTYAGLFPKLVGRFVLDGVVPPDATPAEVSIGQAEGFE
                     RATRAWAQDCVNNGCPLGSSVDAVMAGIRDLLKRLDAHPVPMSDGRQSQLTEGWAATG
                     IAQAMYDQSLWPTLTEAMRQVVDGNNGTLLMQLADQYADRDTKGHYSSNLLEAFYAIS
                     CLDGPDSPDLKVYEQRAHDASLKAPTWGAFLAWGNVVCGQWPVKEGRGPHTISAAGSG
                     PIVVVGTTRDPATPYEWSVQLRHELANARLLTYDGDGHTAYTRSNGCV"
BASE COUNT          252 a          556 c          578 g          260 t
ORIGIN      
        1 ccacacaacc attcgaccgc gtgtatgccg tgtgcccgtc gccgtcgtag gtcaggagcc
       61 gggcgttggc aagctcgtga cgcagctgca ccgaccactc gtagggagtg gcagggtcgc
      121 gggtcgtgcc gaccacgacg atgggtccac taccagcggc gctgatggtg tgcggtccgc
      181 gcccttcctt gaccggccac tggccgcaga cgacgtttcc ccaggccagg aaggctcccc
      241 aggtgggggc cttgaggctg gcgtcgtggg cacgttgctc gtagaccttg aggtccggac
      301 tgtctggacc gtccagacac gagatggcat agaaggcctc gagcaggttg ctggagtagt
      361 ggcccttggt gtcccggtcg gcgtactggt cggcgagctg catgaggagc gtgccgttgt
      421 tgccgtcgac gacctgacgc atcgcctcgg tcagagtcgg ccacagactc tggtcgtaca
      481 tggcctgcgc gatccccgtg gcggcccaac cctcggtgag ctgggactgg cgcccgtcgc
      541 tcatcggcac cgggtgggcg tcgagtctct tgagcaggtc gcggatgccg gccatgaccg
      601 cgtcgaccga gcttcccagg ggacagccgt tgttgacaca gtcctgtgcc caggcgcggg
      661 tcgcccgctc gaaaccctcg gcctgcccga tcgacacctc agcgggagtc gcgtccgggg
      721 gcaccacacc atcgaggaca aagcggccga ccagcttggg aaagagtccc gcgtaggtcg
      781 agccgatgag ggtgccgtac gacttgccga ggtagttcag cttggcgtca cccagagccg
      841 agcgcaggat gtccagatcc cgagccgtgt cctcggtcga gatgtgtccg atcaatggac
      901 cggtgcgttg cacgcagccc tgggcgaact gcgcccccga tgcggcgaag gcctgctcct
      961 ctgccggggt gtcgggggtc gggtcctggc cgaggaaggc atccatctgc gggtcggaca
     1021 gacagtcgac cggatgggaa cgctgcaccc cgcgagggtc gaagcccacg atgtcgaagc
     1081 gctggcggac cggtgcgcgg acgatctggt cggcggcccg ggcatagtcc accccggaac
     1141 cccccggccc gcccggattc acgaccaggg acccgatccg ttcgccgggt cgcgtggccg
     1201 tcatcctcag gacctgcacg atgatggtcg gaccggccgg ctgggcgtag tcgagcggca
     1261 ctgacagacc cgcgcactgc gcgtcgccgc aaccgtgcca ggcgagcgtc tgaccgtaga
     1321 agcgtgcgag ggcggtggcg ccggggggcg gcgttcgtgc cacgctcggc tgcggtgtgc
     1381 tggtccggga gcttaccgcc tggtctgctc ccgggcccga gtgcgaggaa cagccagcca
     1441 cccccgtcgc cagcacgacc gcagccgcca ccaggacatt tcgccgccgc gtcatggtcc
     1501 cgacggtatc tcgacgccct gcgtcaggtt catcgaggcg gtcgcagcga gatcgccatg
     1561 gcctccaagg ccagtaacgg agccacgttg aggccgatcc gctcccgggc cgtcccgatc
     1621 gcatccatcg cgaccagcag ctgctc
//
LOCUS       DASYFY010000657         2317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_467534, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000657 DASYFY010000000
VERSION     DASYFY010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467534"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VGN19_13350"
     CDS             <1..180
                     /locus_tag="VGN19_13350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196917.1"
                     /translation="LCRAHHTVVHAHGYAGRVVAGPSGPRVEWDLTSGSYHRRFQQWR
                     GECARSTDEGGPPRP"
     gene            293..1303
                     /locus_tag="VGN19_13355"
     CDS             293..1303
                     /locus_tag="VGN19_13355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013602759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family protein"
                     /protein_id="HEV7196918.1"
                     /translation="MDYRYLGNSGLKISEITYGNWLTHGSQVENDVAAQCVAAALDAG
                     ISTFDTADVYANTKAESVLGDALKGERRESLEIFTKVYWPTGPGGKNDTGLSRKHIME
                     SINGSLERLQTDYVDLYQAHRYDTETPLEETMQAFADVVRQGKALYIGVSEWTADQIR
                     EGVKLSKELGFQLISSQPQYSMLWRVIEGEVVPTCEELGVSQIVWSPIAQGVLTGKYQ
                     PGQQPPEGSRAADEKGGADMIKRFMNDDVLSRVQGLKPIADEAGLSMAQLAVAWVLQN
                     PNVAAALVGASRPEQVHENVKAAGVKLEPELLTKIDDVLGDIIVRDPGMTTQTAPRGR
                     VA"
     gene            complement(1456..2154)
                     /locus_tag="VGN19_13360"
     CDS             complement(1456..2154)
                     /locus_tag="VGN19_13360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196919.1"
                     /translation="MAARLEHRLHQPQVGPTELSRGCTFAAESGLAAVLCRPEHVPAA
                     AERLAGSEVDVVTVLGFHDPRSPRRSPQELAREADELTAQGATELALVATPGSMPADG
                     TAFLVDQIGAVTQAAPHGTRVRTLLDTTAMTDDEISASCRAMVDAGVQLIQGGSFRGD
                     RTAFSQVEIMRSAMPRNVLLKWTQPVRSVQAMLVSLAVGVDRFNGDPAALLQDASRQT
                     RVGPLRIPVSGIDF"
BASE COUNT          399 a          814 c          767 g          337 t
ORIGIN      
        1 ttgtgccggg cccaccacac cgtggtgcac gcccacggct acgccgggcg cgtcgtcgcc
       61 ggcccgagcg gtccgcgagt cgagtgggac ctcacctcgg ggtcctacca ccgccgattc
      121 caacagtggc gcggggagtg cgcccgctcg accgacgagg gcgggccacc ccgaccatga
      181 ccctgcccca caccccgccc ccaaggatgg cggggctgga ggcgtgccgt gagcttgagg
      241 cggggctgac cacgattgcg cgccgacgcc gactgcggca tacggttgaa gcatggacta
      301 ccgatacctc ggcaatagcg gactgaagat ctctgagatc acctacggca actggctcac
      361 gcacggctca caggtcgaga acgacgtcgc ggcacagtgc gtggccgccg cgctcgacgc
      421 gggaatcagc accttcgaca cggccgacgt ctacgccaac accaaggcgg agtcggtgct
      481 cggcgatgcc ctcaagggcg agcggcgcga gagcctcgag atcttcacca aggtctactg
      541 gcccaccggc ccgggcggga agaacgacac cggcctgtcc cgaaaacaca tcatggagtc
      601 gatcaacggc tcgctcgaac gactccagac cgactacgtc gacttgtacc aggcgcaccg
      661 ctacgacacc gagaccccgc tcgaggagac gatgcaggcg ttcgccgacg tcgtccgcca
      721 aggtaaggcg ctctacatcg gtgtcagcga gtggaccgcc gatcagatcc gtgagggcgt
      781 caagctctcc aaggagctcg gcttccagct gatctcgagc cagccccagt actccatgct
      841 gtggcgcgtg atcgagggcg aggtcgtgcc gacgtgcgag gagctcggcg tcagccagat
      901 cgtctggagc cccatcgcgc agggcgtgct tacgggcaag taccagccgg gtcagcagcc
      961 cccggagggc tcgcgcgctg ccgacgagaa gggcggcgcc gacatgatca agcgtttcat
     1021 gaacgacgac gtgctgagcc gcgttcaggg cctcaagccg atcgccgacg aggcgggcct
     1081 ttcgatggcc cagctcgccg tcgcctgggt gcttcagaac ccgaacgttg cggccgcgct
     1141 cgtgggcgcc tcccgtcccg agcaggtgca cgagaacgtg aaggccgctg gcgtcaagct
     1201 cgaacccgag ctcctgacga agatcgacga cgtcctcggc gacatcatcg tgcgtgaccc
     1261 gggcatgacg acgcagacgg cgcctagggg ccgcgtggcc tgatgcccct tccggtatgc
     1321 cccgtgagtc cccacgcggc ataccgggcc ccccggtcgc ctctcgacat ccccccgcaa
     1381 cgtcttcatc ggctcgggac cgaatagtgc cagcggtcgc cctcgaccct gggtttcgtc
     1441 cttgccagac cagcgctaga agtcgatgcc cgacaccggg atcctcagcg ggccgacccg
     1501 ggtctgcctc gaagcgtcct gaagcaacgc ggctgggtct ccgttgaagc ggtctactcc
     1561 gacagcgagg ctcacgagca tcgcctggac ggaccgaacc ggttgggtcc acttgagcag
     1621 gacgttccgg ggcatggctg accgcatgat ctcgacctgg gaaaaggcgg tgcggtcccc
     1681 acggaacgag ccgccctgga tgagctgcac gccggcatca accatggccc gacacgacgc
     1741 gctgatctcg tcgtccgtca tcgcggtggt gtccagcagc gtgcgcaccc tggtcccatg
     1801 tggagccgcc tgggtcacag cgccgatctg gtcgacgaga aatgcggttc catcggccgg
     1861 catcgacccg ggggtcgcga cgagggcgag ttcggtggcc ccctgggcgg tgagctcgtc
     1921 cgcctcccgc gccagctcct ggggtgaacg ccgaggggac cgcggatcat ggaaaccaag
     1981 gacggtgacg acgtccacct ccgacccggc aagccgctcg gcggccgcgg gcacatgctc
     2041 cggacggcac aacaccgcgg cgagaccgga ctcggccgca aaggtgcagc cacgggagag
     2101 ctctgtgggt ccgacctgcg gctggtggag cctgtgctcg agccgtgccg ccacgccccg
     2161 gacggtcaga atctgccgac cccaaccgtc attgtcgcgt ggaggatgcc gacttccgtc
     2221 aggtcccatc cgcgccccct cccaccaatg cgatcggtcc ccgatggtgg cagcgtccca
     2281 cggttgccgg ggatgcgcta tttgtgcccc ggtcacg
//
LOCUS       DASYFY010000658         2834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_678510, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000658 DASYFY010000000
VERSION     DASYFY010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678510"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VGN19_13365"
     CDS             complement(<1..225)
                     /locus_tag="VGN19_13365"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196920.1"
                     /translation="MATTHPATSGDVVVGFDGSRNAAEAVEWAAQEALRQGTRLRIIS
                     SGYYPGMPSWVGVAGAPLPRSIELAAEELAD"
     gene            complement(225..1178)
                     /locus_tag="VGN19_13370"
     CDS             complement(225..1178)
                     /locus_tag="VGN19_13370"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEV7196921.1"
                     /translation="MAVSNPFTTVVVGCDDSWQSHAAVEVATLEASRRHCPLVVLSVA
                     RADGLRGGLAAMRAWEQNAVAAATATAKGAAERAFATNSTVPVQIVVASSVDDAQVSE
                     AARRAELLVVGGYGSRGQAAFSLGTTSGELVRRFGTPVLVPRRERATTPGPWDDRPPE
                     VLVGISPARGATQPLRAAARQAELRGWSLGVIHTVPTTHPGQRLHHEQQAVWDAVRAV
                     PECASVPCHVEVMQEATVPALISRCGPRDLLVVSTRGGGTLAGLIEGSVARGVLDASV
                     CDVMVVPALADSTPGAVADDPAGALASATRGVSATRGVRST"
     gene            1368..1802
                     /locus_tag="VGN19_13375"
     CDS             1368..1802
                     /locus_tag="VGN19_13375"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEV7196922.1"
                     /translation="MTTEQDSGSIPTDHTGLRVLTFDECLARLAECPVGRIAFVHDGE
                     IDVLPVNHTVQGLNIYFRTRGGSKIEAAANGDRVSFQADSYDQQTKDAWSVLLHGTAE
                     VVDDPEDLRRLEPIAREPWVPRDSSEMTWIRVRSTAITGRAL"
     gene            1859..>2834
                     /locus_tag="VGN19_13380"
     CDS             1859..>2834
                     /locus_tag="VGN19_13380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEV7196923.1"
                     /translation="MTAPPLLVRFADGDQTMADLLGGKGANLAEMTRMGLPVPQGFTI
                     TTQACREYLAQGRLPPELGAQVASAMTDLQTATGRTFGSGKSPLLVSVRSGGRFSMPG
                     MMDTILNVGLTDTSVHELAASGGERFAWDCYRRLVQMYGRTVLGVDAALIDAPVADAC
                     QSARATDPSALSVGILMDLVTHQRQILKEQTGQDLPQDPWHQLDRSVEAVFASWNSPR
                     ARVYRAHEGIAENLGTAVNVVQMVYGNTGPRSGSGVCFTRDPATGDPHPYGDYLQNAQ
                     GEDVVNGSRQTVPLRTLQTLEPTAFHQLLSHLTHLERHYRDLCDVEFTL"
BASE COUNT          481 a          990 c          930 g          433 t
ORIGIN      
        1 gtcagcgagt tcctcagccg ccagctcgat cgaacgaggc aggggggcgc ctgccactcc
       61 gacccacgac ggcattcccg ggtagtagcc cgaagagatg atccgaagtc tggtcccttg
      121 tcgcaaggcc tcctgggctg cccattccac cgcctccgcg gcgttgcgcg atccgtcgaa
      181 gccgacgacg acatctccag aggtggccgg gtgggtagtg gccatcaggt gctccttact
      241 cctcgtgttg cgcttactcc tcgtgttgcg ctggcaaggg cgccagcagg gtcgtcagcg
      301 acagcgcctg gagtgctgtc ggcgagggcg ggcacgacca tgacgtcaca caccgacgca
      361 tcgagcacgc cgcgagcgac ggacccctcg atcagaccgg cgagggtgcc gccgccgcgg
      421 gtgctgacga ccagaaggtc gcgcgggccg cagcggctga tgagggcggg gacggtggct
      481 tcctgcatga cttcgacatg acagggcacg gacgcacatt cggggaccgc acgtacggcg
      541 tcccagacag cttgctgctc atggtggagc cgctggcctg gatgggtcgt cggaactgtg
      601 tggatgaccc cgagggacca gcctcgcagc tcggcttgtc gcgctgccgc acgcaagggc
      661 tgcgtcgcgc cgcgagcagg gctgattccg acgagcacct cggggggacg atcgtcccaa
      721 ggccctggcg tggtcgcgcg ttcgcggcgc ggcacgagca ccggggtgcc gaagcggcgc
      781 acgagttcgc cgctggtggt gcctagtgag aacgccgcct gaccccgcga cccgtacccg
      841 ccgacgacca gcagctcagc ccgtcgtgcg gcctccgaga cctgcgcgtc atcaaccgag
      901 ctggcgacca cgatctgtac gggcacggtg ctattggtgg caaaggcccg ttcggcagcg
      961 cccttagccg tagccgtcgc ggccgcaacg gcgttctgct cccaggcacg catcgcggca
     1021 aggccgccac gcaggccgtc ggccctcgcg accgacagca cgacgagcgg gcagtgccgg
     1081 cgactggcct caagggtggc aacctccacc gcggcgtgac tctgccacga gtcgtcacag
     1141 ccgacgacca ctgtggtgaa cgggttcgag actgccattg cactcgccat gcttcctggg
     1201 ctcgttcttt ctgggctcgt tagcccatgc ggaatcactt ccactgtgcg aggtgtgagg
     1261 ggcctgcggt caggccctag gtcctacgtc ttgggcgcga ccgccgtgtt cggatgagag
     1321 ggaccttcgc ccctgcgacg gctggcgcca agaacgaccc ttgagacatg accaccgaac
     1381 aggacagcgg cagcatcccc acggaccaca cgggcctgcg tgtcctcacc ttcgacgaat
     1441 gcctagccag gctcgccgag tgcccggtcg gcaggatcgc ctttgtgcat gacggcgaga
     1501 tcgatgtgct cccggtgaac cacaccgttc aggggctgaa catctacttc cgcacccggg
     1561 gcggttccaa gatcgaagcc gccgcgaacg gcgaccgcgt gtcgttccag gcggacagct
     1621 atgaccagca gaccaaggac gcctggagtg tcctcttgca cggaaccgcc gaggtggtcg
     1681 acgacccaga ggatcttcgg cggctggagc cgatcgcccg cgaaccgtgg gttcccaggg
     1741 attcgtcgga gatgacctgg atcagggtcc gctccacggc catcaccgga cgggcgctgt
     1801 gagggacgcg ggccgaaggt cccggaccac cccgctccgc tagcccgacg atgaagatat
     1861 gaccgcgcca ccgctgctcg tcaggttcgc cgatggcgac caaaccatgg ccgacctcct
     1921 gggcggcaaa ggcgcgaacc tcgccgagat gacccggatg ggcctgccgg tgccccaggg
     1981 cttcacgatc accacccaag cctgtcggga gtacctggca cagggacgcc tgccacccga
     2041 gctgggcgca caggtcgcct ccgccatgac agatctgcag acggccacgg gtcgtacttt
     2101 cggctccggg aaaagcccgc tgctggtctc cgtccgctcc gggggccggt tctccatgcc
     2161 cggcatgatg gacaccatcc tcaacgtcgg gctcaccgac acctcggtcc acgagctggc
     2221 cgcgagcggc ggggaacggt tcgcctggga ctgctaccgg cgactcgtcc agatgtacgg
     2281 gcgaacggtg ctcggcgtcg acgccgccct gatcgatgcc cctgtcgctg acgcctgcca
     2341 atccgcacga gccaccgacc cctcggcact gagcgtcggg atcctgatgg acctggtgac
     2401 ccatcagcgt cagatcctca aggagcagac cggacaggac cttcctcaag atccctggca
     2461 ccagctggac cggtcggtcg aggccgtgtt cgcgtcctgg aacagtccgc gagcgcgcgt
     2521 ctaccgggcg catgagggca tcgcggagaa cctcggcacg gccgtcaacg tcgtccagat
     2581 ggtctacggc aacacgggac ctcgctcggg cagcggcgtg tgcttcaccc gagatccagc
     2641 taccggcgac cctcacccgt acggcgacta ccttcagaac gctcagggcg aagacgtcgt
     2701 caacggaagt cgacagacgg tcccgctccg gacgctgcag accctcgagc ccaccgcctt
     2761 tcaccagctg ctgagccacc tgacccacct ggaacggcac taccgcgacc tgtgcgacgt
     2821 cgagttcacc ctcg
//
LOCUS       DASYFY010000659         2164 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_889184, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000659 DASYFY010000000
VERSION     DASYFY010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_889184"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..780
                     /locus_tag="VGN19_13385"
     CDS             <1..780
                     /locus_tag="VGN19_13385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HEV7196924.1"
                     /translation="ADEARTLLHPYEQALLNGLFAEGAVVELSALKNTFKPTLERVQN
                     LMYDEVVQRGWFRRSPQSQRAVWTTLGGALAFVGIFSVFWLGGTLSRLGSVSGLPVSP
                     GYVLAGGIVLSGLVVVLLGRRMAARTADGSAVLAQAEGFKQYLVTAEAEQIRWEEAQD
                     IFSRYLPYAIVFGVASQWAATFERVATAAAAAGQTLTPPLWYLGGAYGSFGGIADGLD
                     SFATTAGGTFTSTPGSSGGSGFSGGGGFSGGGGAGSSGGSW"
     gene            complement(847..1020)
                     /locus_tag="VGN19_13390"
     CDS             complement(847..1020)
                     /locus_tag="VGN19_13390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEV7196925.1"
                     /translation="MGQTDKLDNTKDDLTGKAKEAAGKVTDNERLEAEGKADQSKADI
                     KQAGEKVKDAFKH"
     gene            complement(1146..>2164)
                     /locus_tag="VGN19_13395"
     CDS             complement(1146..>2164)
                     /locus_tag="VGN19_13395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEV7196926.1"
                     /translation="DLRAVCDLEPYWEGVRQLYFPFESGLPSPTGRVYTHEIPGGQLS
                     NLRQQAIALGLGDRFEAIEDMYAAANRILGNIVKVTPSSKVVGDLALALVGAQADPAD
                     FEENPTKYDIPDSVIGFLSGELGDPPGGWPEPFRSKALQGRKPRPRVSELRAEDREEL
                     KASPRHTLNRLLFPGPTQDFERSREAYSDLAVLGTREFLHGIEVGSEQEIDLEPGKRL
                     LIGLQSVSEADERGMRTVMFTLNGQLRPVQVRDEKISVDVRTAEKADASDRGQVAAPF
                     AGVVSLAVDEGDSVAAGAVVATIEAMKMEASITAPVAGTVTRLAIGSQQQVEGGDLLV
                     VIGS"
BASE COUNT          277 a          747 c          768 g          372 t
ORIGIN      
        1 gccgacgagg cccgcacgct gctgcacccc tacgagcagg ccctgctgaa cgggctgttc
       61 gccgaggggg ccgtggtcga gctctccgcg ttgaagaaca ccttcaagcc gacgctggag
      121 cgggtccaga acctgatgta cgacgaagtc gtccagcggg ggtggttccg acgttcgccg
      181 cagagccagc gcgccgtctg gacgacgctc ggcggggccc tggccttcgt cgggatcttc
      241 tcggtgttct ggctgggcgg gacgctgtca cgactcgggt cggtgtccgg actgccggtg
      301 tcgccgggct acgtgctggc cggcgggatc gtgctctccg gactggttgt cgtcctgctg
      361 ggccggcgga tggctgcccg cacggccgac ggcagtgccg tcctcgccca ggcggagggc
      421 ttcaagcagt acctcgtcac ggccgaggct gagcagatca ggtgggagga ggcgcaggac
      481 atcttcagcc gctacctgcc ctatgccatc gtcttcggcg tcgcctcgca gtgggccgcc
      541 accttcgagc gggtggcgac ggctgccgcc gcggcggggc agacgctgac cccgccgctg
      601 tggtacctcg gaggcgccta cggctcgttc ggcgggatcg ccgacggcct ggactcgttc
      661 gcgacgaccg ccgggggcac cttcacgagc acgccgggca gctccggggg ttcggggttc
      721 tccggcggtg gcggcttctc gggcggtggc ggcgcaggat cgtcgggcgg ttcctggtag
      781 gcgcgatcgg ccccggaacg gcagaggccg gacccccgag ggggcccggc cgtgcccgtc
      841 gcgcactcag tgcttgaagg cgtccttgac cttctcaccg gcctgcttga tatcggcctt
      901 gctctggtcg gccttgccct cggcctcgag gcgctcgttg tcggtgacct tgccggcggc
      961 ctccttggcc ttgccagtca ggtcgtcctt ggtgttgtcg agcttgtctg tctgtcccat
     1021 gtcgggctcc tcgcatggat cgggttcggt ggtcggcact ggccgcttct tgaccccgtg
     1081 cacctccacc gtaacccgac caggccggac ccgcagatca ggagccgcag gtcaggaccc
     1141 gcaggtcagg agccgatcac gaccagcagg tctccaccct cgacctgctg ttgcgacccg
     1201 atggcgaggc gggtgaccgt ccccgccaca ggtgcggtga tgctggcctc catcttcatg
     1261 gcctcgatcg tcgccacgac ggcccctgcc gccaccgagt caccctcgtc cacggccagg
     1321 ctcaccaccc cggcgaacgg ggcggccacc tgaccacggt ccgacgcgtc ggccttctcg
     1381 gcagtcctga cgtcgacgct gatcttctcg tcgcgcacct ggaccggtct gagctggccg
     1441 ttgagggtga acatcacggt ccgcatgccg cgttcgtccg cctcggacac cgactgcagt
     1501 ccgatgagca gccgcttgcc gggctcgagg tcgatctcct gctcggagcc gacctcgatg
     1561 ccgtgcagga actcacgggt ccccagcacg gcaagatcgg agtacgcctc gcgggagcgc
     1621 tcgaagtcct gggtcggccc gggaaagagc aggcggttga gcgtatgccg cgggcttgcc
     1681 ttcagctcct cgcggtcctc tgcgcgcagc tcgctgaccc gcgggcgggg tttgcggccc
     1741 tgaagggcct tgctccggaa cggctcgggc catccgccgg gcgggtcgcc gagctcgccg
     1801 gacaggaagc cgatcaccga gtcggggatg tcgtacttgg tggggttctc ctcgaagtcg
     1861 gccgggtcgg cctgggcccc caccagcgcg agggcgaggt ctccgacgac cttgctgctg
     1921 ggggtgacct tgacgatgtt gccgaggatg cggttggccg cggcatacat gtcctcgatg
     1981 gcctcgaagc ggtcgccgag gccgagggcg atcgcctgtt ggcgcaggtt cgacagctgt
     2041 ccgcccggga tctcgtgcgt gtagacccgc cccgtggggg acggaagccc cgactcgaac
     2101 gggaaataca gctggcgcac gccctcccag tacggctcga ggtcacacac ggcccgcagg
     2161 tcga
//
LOCUS       DASYFY010000660         1543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1625146, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000660 DASYFY010000000
VERSION     DASYFY010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1625146"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..794)
                     /locus_tag="VGN19_13400"
     CDS             complement(<1..794)
                     /locus_tag="VGN19_13400"
                     /inference="COORDINATES: protein motif:HMM:NF014193.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HEV7196927.1"
                     /translation="MFRVLISRRWLGALAVALAFAAAAFLLGRWQWGRYEDKAARANQ
                     INSHYNATPRPIQDVLKVGPMPPSAEWTRVTMHGRYAVQSTLLVRNRPYQGNYGYEVV
                     VPFADSSGSTVLVDRGWVLNAQNAETLPSYPAAPSQDVTVTGWLRPSEPSLGRTMPDG
                     QLASINLAEASRAAGTPLAGAYVILQSERLPDGTAPARPVALDPPDTDLGPNQAYAFQ
                     WWLGMVGGVVLVLFGARREYRESLTGPSSTSSSSSAGAPPRSKPVKV"
     gene            827..>1543
                     /locus_tag="VGN19_13405"
     CDS             827..>1543
                     /locus_tag="VGN19_13405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEV7196928.1"
                     /translation="MTRLPFPSVREPSVRELPPAPGGSQGLADQFGRVARDLRVSVTD
                     RCNLRCRYCMPAEGLPWLAKPEMLSDDELVRVVATFVGLGVRQVRLTGGEPLLRRSLV
                     DVVRRIADLEPRPKIAMTTNGVGLDRLAGPLAAAGLDRVNVSLDTIDPQEFADLTRRD
                     RLHDVEAGLEAAAAAGLAPVKVNAVAMRGINDESVADLLQWCLDRDYELRFIEQMPLD
                     AQHGWDASTMISAQEVRARLE"
BASE COUNT          231 a          515 c          560 g          237 t
ORIGIN      
        1 accttgacgg gcttcgaccg aggcggggca ccggcgctgc tagagctgct agtgctgcta
       61 ggcccggtga gggactcgcg gtactcgcgt cgcgctccga agaggaccag cacgacaccg
      121 ccgaccatcc ccagccacca ctggaaggcg tacgcctggt tcggccccag gtcggtgtcc
      181 gggggatcga gtgcgacggg cctggcgggc gcggtgccgt cagggagccg ctcggactgc
      241 aggatgacgt aggcaccagc caggggggtg cccgccgccc ggctggcctc ggcgaggttg
      301 atgctcgcga gctggccgtc gggcatcgta cgacccaggg atggctcgga ggggcgcagc
      361 catcccgtca ccgtaacgtc ctggctgggt gcggcgggat agctcgggag cgtctcggcg
      421 ttctgggcgt tgagcaccca gccgcggtcg accagcacgg tgctccccga cgagtcggcg
      481 aacggcacga ccacctcgta gccgtagttc ccctggtagg gacggttgcg gaccagcaag
      541 gtgctctgga cggcataccg gccgtgcatg gtcacgcgtg tccactcggc gctggggggc
      601 atggggccga ccttgagcac gtcctgaatc ggacgtggcg tggcgttgta gtgcgagttg
      661 atctggttcg cccgggctgc cttgtcctca taccgtcccc actgccagcg ccccaggagg
      721 aaggctgccg cagcgaaggc cagggccact gccaaagcgc ccagccatcg tcgcgaaatg
      781 agcaccctga acaccgcatc acggtacccg gcctaggctg gggggtatga cccgcctgcc
      841 gttcccctcg gtgcgtgagc cctcggtgcg tgagcttcct cccgctcccg gggggagcca
      901 ggggctggcg gaccagttcg gtcgggtcgc gcgggacctg cgggtctcgg tcaccgaccg
      961 gtgcaacctg cgctgccgct actgcatgcc cgccgagggc ctgccctggc tggccaagcc
     1021 cgagatgctg tccgacgacg agctggtgcg agtcgtcgcc acctttgtcg gactgggggt
     1081 acggcaggtc aggctgaccg gcggtgaacc cctgttgcgt agatcgctgg tcgacgtcgt
     1141 gcggcgcatc gccgaccttg aaccgcggcc caagatcgcc atgaccacca acggtgtcgg
     1201 cctggaccgg ctggccggtc cgctggccgc tgctggtctc gaccgcgtca acgtcagcct
     1261 ggacacgatc gacccacagg agttcgccga cctgacccgt cgggaccgac tgcacgacgt
     1321 ggaagccggt cttgaggccg ccgcggcggc aggcctggcg ccggtcaagg tcaacgcggt
     1381 ggccatgcga ggcatcaacg acgagtccgt ggcagacctg ctccagtggt gcttggaccg
     1441 cgactacgag ctgcggttca tcgaacagat gccgctggac gcccagcacg ggtgggacgc
     1501 gtcgaccatg atcagcgcgc aggaggtgcg agccaggctg gag
//
LOCUS       DASYFY010000661         1872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_941158, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000661 DASYFY010000000
VERSION     DASYFY010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941158"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VGN19_13410"
     CDS             <1..209
                     /locus_tag="VGN19_13410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196929.1"
                     /translation="TGLPERRYIDSLLARVQEVSLNSRIAEAMSTMRRMATDPHTDPT
                     TARTLAGELQDLQRQLAQLRDRAS"
     gene            209..724
                     /locus_tag="VGN19_13415"
     CDS             209..724
                     /locus_tag="VGN19_13415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196930.1"
                     /translation="MAFSLRRPARLPAPVLHALELGSGERVLAWGREQLGATVVATNH
                     RLYAVDAGGQRQLSRPWHEVEAGTWSSELGQLTVTWVDGTRPIQWTLGDATLVPETVR
                     ERVQASVVIAQGVELGPRRNARVAIRQDLATGALVEQVVLGRGVRPDDDAVAASTAEA
                     LADLREQVGLD"
     gene            815..890
                     /locus_tag="VGN19_13420"
     tRNA            815..890
                     /locus_tag="VGN19_13420"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:848..850,aa:Asn,seq:gtt)
     gene            complement(946..1800)
                     /locus_tag="VGN19_13425"
     CDS             complement(946..1800)
                     /locus_tag="VGN19_13425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017833411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEV7196931.1"
                     /translation="MRPEPTKRPRIPVRGAALGVALASALALVGCTGPGQRPAGGGRF
                     VVGIKFDQPGLGLRTGSRYSGLDVAVATYVAEQLGHQPSDITWVQAPSAQRETLITTG
                     QVDIVVATYSITDQRKEKVSFAGPYFVAGQDLLVRSDDTSITGPDTLTGKTLCSVTGS
                     TSAQKVLEKYPGVQLQEFGTYSQCVAALVSSNVDAVTTDNAILAGYAAQPAYKGKVRV
                     VGKTFSVERYGIGLRKGNVKTCEKITAAITKMIASGAWEKAVEANLAPSGITVDRASN
                     PPKQDPCS"
BASE COUNT          275 a          597 c          679 g          321 t
ORIGIN      
        1 gaacgggtct gccggaacgt cggtacatcg acagcctgct ggccagggtc caagaggtgt
       61 cgctgaacag tcggattgcc gaggccatgt cgacgatgcg tcggatggcg accgatccgc
      121 ataccgaccc caccaccgct cgcacgctcg ccggtgagct tcaggatctc cagcggcagc
      181 tggcccagct ccgcgaccgg gcgagctgat ggccttctcc ttgcgccgcc cggctcggct
      241 cccagcgccg gtgctgcacg ccctcgagct ggggtcaggc gaacgagtcc tcgcgtgggg
      301 gcgcgagcag ctcggtgcca cggtcgtggc cacgaaccac cggctgtatg ccgtggacgc
      361 gggtgggcag cggcagcttt cccggccgtg gcacgaggtg gaggccggga cctggtcgtc
      421 agagctgggc cagctcaccg tgacctgggt cgacggcaca cggccgattc agtggacgct
      481 gggtgacgcc accctggtcc cggagacggt gcgcgagcgg gtgcaggcca gcgtggtgat
      541 cgcccagggg gtggagctcg gcccccgacg caacgcccgc gtcgcgatcc ggcaggacct
      601 ggccaccggc gcgctggtcg agcaggtggt gctggggcgc ggcgtgcggc cggacgacga
      661 cgcggtggct gcctcgacgg cggaggcttt ggcggatttg cgcgagcagg tgggtctcga
      721 ctgaccgcgt ggcgcgagcg ccttcccgtt ttcagaactg ccgcgatcct ttgctatggt
      781 tgcgcagcgc cgcgggctga aacgcccagg acattcccct gtagctcaat tggcagagca
      841 gccgactgtt aatcggcagg ttgttggttc gagtccaacc gggggagcca gcgcaaggcc
      901 tctgagtcgc ggaaacgcct ctcgggggcc tttgtcatgc catggtcagg agcaggggtc
      961 ctgtttgggt gggttgctcg cccggtccac cgtgatcccg ctgggggcga ggttcgcctc
     1021 gacggccttc tcccaggcgc ccgaagcgat catcttcgtg atcgcggccg tgatcttctc
     1081 gcaggttttg acgttcccct ttcgaagccc gatcccgtac cgctccaccg aaaaggtctt
     1141 gccgaccact ctgaccttgc ccttgtaggc cggctgtgcg gcatagcccg cgaggatggc
     1201 gttgtcggtg gtgacggcgt cgacgttgga ggagaccagg gcggccacgc actgggagta
     1261 ggtcccgaac tcctggagct gaactccggg atacttttcc aaaaccttct gggcagaggt
     1321 ggacccggtg accgaacaca gcgtcttgcc ggtcagggtg tcagggcccg tgatcgaggt
     1381 gtcgtcgctg cgcaccagga ggtcctgccc ggcgacgaag taggggcccg cgaacgacac
     1441 cttctctttg cgctggtcgg tgatggagta ggtcgcgacg acgatgtcga cctggccagt
     1501 ggtgatgagg gtttcgcgtt gtgcggaggg cgcctgaacc caggtgatgt ccgacggctg
     1561 gtggccgagc tgttcggcca cgtaggtggc caccgcgacg tcgagcccgc tgtacctcga
     1621 accggtccgc agccccaagc cgggttggtc gaacttgatt ccgacgacga acctgccgcc
     1681 gcctgcgggt cgctgaccgg ggccggtgca gccgaccagc gccagcgcgc tcgccaaggc
     1741 gacacccaac gccgcacccc ggaccgggat gcgcgggcgc ttggtcggct ctgggcgcac
     1801 gtcgggcagg tcagtgctca aggatcttgc cgaggaagtc tttggctcgg tccgaggccg
     1861 gggcggtgaa ga
//
LOCUS       DASYFY010000662         3347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1152121, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000662 DASYFY010000000
VERSION     DASYFY010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1152121"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..446)
                     /locus_tag="VGN19_13430"
     CDS             complement(<1..446)
                     /locus_tag="VGN19_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEV7196932.1"
                     /translation="MSQQSRPSGAPELSDPTTDPFEVARAAAEVIAQRTGAERHDVAL
                     VLGSGWGQTADLIGETLATVDNADVPGFAKAAVAGHSGSMRSVAIGDSGRRALVYGTR
                     THFYEGKGVRAVVHAVRTAAAAGCSTIVLTNGCGGLNRSWGPGTPVL"
     gene            complement(493..1632)
                     /locus_tag="VGN19_13435"
     CDS             complement(493..1632)
                     /locus_tag="VGN19_13435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7196933.1"
                     /translation="MSTTAPPAHQETTGQHGVAVELTGLRRTYGQIQALDDLTLRLAP
                     GELVALLGPSGCGKTTALRCLAGLEDPDAGRIEVGGKDITHLSTNRRDMGMVFQAYSL
                     FPHLTARQNVEFGLQLRKHPAPRRRARATEMLELVGLSSQADRFAHQMSGGQQQRVAL
                     ARALAIEPQVLLLDEPLSALDAKVRVQLRDEIRRIQLEVGTTTLFVTHDQEEALAVAD
                     RVGVMRAGRLEQIAPPQELYSQPVSEFVADFVGVTNRLPGTVSNGQATVLGASVPLLA
                     GSAANGSVTVLVRPEHLALEQPTGTAASSDATSGSGTVVSSSFLGAHGRVVVTVPSAV
                     SEGDGSGGDNTVLVQVASAAVSDFAPGTRVRIRPLGVPALAVAAD"
     gene            complement(1629..2486)
                     /locus_tag="VGN19_13440"
     CDS             complement(1629..2486)
                     /locus_tag="VGN19_13440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEV7196934.1"
                     /translation="MSPARGQRAAFRRRQDVLRRVVVTLVVVFFLAPLAGSLDFTTRA
                     ASGHRSLQTWSTLLDLGAISTRYPDLQTGFLASAGLAVLTPAIMLILLVPTMTWVRLR
                     VPGATRAVEFLCLLPLTVPAIVLVVGLTPVYAWVTYLLGESTIWLAFAYVVLVLPYAY
                     RSLDAGLRAIDVRTLSEAARSLGAGWPTVMWRVILPNVRTAVLSASFLAVALTLGEFT
                     IASLFSRTNLQVAMYLLGKSDAQISVAVGLAFLVFSFLVLFALSFVGGQRGGVSPLSR
                     LRRTPKESS"
     gene            complement(2483..>3347)
                     /locus_tag="VGN19_13445"
     CDS             complement(2483..>3347)
                     /locus_tag="VGN19_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005049793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEV7196935.1"
                     /translation="RAFGGRRPSSALLGVVPFFAYVTVFLVIPTLVVVVGAFVGHSGG
                     LTLANLKALGNPAVTNALWHSVVLSAVTAVAGALIGAVLAYAVSTGRPDGILKKFVTS
                     LSGVLAQFGGVALAFAFLATFSAEGYVTKVLTSAGLNSNGGLWLYEWNQGLMLVYLYF
                     QIPLMLIVFLPAVEGLKPQWREATETLGGSTFVYWRTVAGPILLPSFVGALLLLFTNA
                     FSAYATAAALVSQGSPLLPLAIGNTLSSEVVLGQENVGKAMALEMVVVVAVVMTAYVV
                     LDRRASRWLVR"
BASE COUNT          586 a         1133 c         1197 g          431 t
ORIGIN      
        1 agcaccggag tgcccgggcc ccaggagcgg ttcagaccac cacagccgtt ggtcagcacg
       61 atcgtcgagc acccggcggc tgcggcggtg cgtacggcgt ggaccacggc ccgcacgccc
      121 ttgccttcgt agaagtgcgt ccgggtgccg tagaccagcg cgcgccgccc ggagtccccg
      181 atggccaccg agcgcatgga gccggagtgg ccggccacgg ctgccttggc gaaaccggga
      241 acgtccgcgt tgtcgacggt cgcgagggtc tccccgatca ggtcggcggt ctgaccccag
      301 cccgagccca gcaccagcgc gacgtcatgt cgctcggccc cggtgcgctg ggcaatcacc
      361 tcggccgcgg ctcgggccac ctcgaacggg tcggtggtcg gatcggacag ttctggggcg
      421 cccgacgggc ggctctgctg gctcaccccg gcagactacc gacgcccgag cactgccacg
      481 cagaccaatg gctcagtcgg cggcgacagc caacgccggg accccgaggg ggcggatacg
      541 gacgcgggtg cctggggcga agtcggagac ggcagcgctg gccacctgga cgaggacggt
      601 gttgtcgccc cctgaaccgt ctccttccga caccgcggag ggaacggtga cgaccacccg
      661 tccgtgggcg cccaggaagc tcgagctgac gacggttccg ctgcctgacg tggcgtcgga
      721 cgaggcagct gtgccggtgg gctgttcgag ggccaggtgt tccggacgca ccagcacagt
      781 gaccgaaccg ttcgctgcgg agcccgccaa cagggggacc gaggccccca gcaccgtggc
      841 ctgaccgttc gagacggtcc ccggtagccg gttcgtgacc ccgacgaagt cggcgacgaa
      901 ctcgctcacg ggctgcgagt acagctcctg cggaggcgcg atctgctcga gtcggccggc
      961 tcgcatgaca ccgacccgat cggccacggc cagggcttcc tcctggtcgt gggtgacgaa
     1021 gagcgtggtc gtgccgacct cgagctggat ccgccggatc tcgtcgcgca gctggacgcg
     1081 caccttggcg tccagcgctg acaagggctc gtcgagcagg aggacctggg gttcgatggc
     1141 gagtgcgcgg gccagcgcga cccgctgctg ctgaccgccg gacatctggt gggcgaagcg
     1201 gtccgcctgg ctgctcagcc ccaccagctc gagcatctcg gtggcgcggg cccgacgccg
     1261 cggcgctggg tgcttacgga gctggagtcc gaactcgacg ttctgtcgag ctgtcaggtg
     1321 cggaaacagg ctgtaggcct gaaacaccat tcccatgtct cgacggttgg tggacaggtg
     1381 ggtgatgtcc ttgcccccga cctcgatgcg ccccgcgtca gggtcctcga gcccggccag
     1441 gcagcgaagt gcggtggtct tgccacaccc ggacggaccg agcagtgcga ccagctcgcc
     1501 gggagccagg cgcagcgtga ggtcgtcgag ggcctggatc tggccatagg tccggcgcag
     1561 cccggtgagc tcgacggcaa ccccgtgctg tccggtggtc tcctggtgcg ccggcggggc
     1621 ggtggtactc atgaggactc cttgggggtg cggcgcagac ggctcagcgg cgaaacgccc
     1681 ccgcgctggc cgccgacgaa ggacagggcg aacagcacga ggaacgagaa gaccaggaac
     1741 gccagcccca ctgccacgga gatctgcgcg tcggacttcc ccagcaggta catcgccacc
     1801 tgcaagttgg tgcgactgaa caggctggcg atcgtgaact cgccgagcgt cagggccact
     1861 gccaggaacg acgccgacag gacggccgtg cgcacgttgg gcaggatcac gcgccacatg
     1921 acggtcggcc agcctgcacc cagcgagcgg gccgcctcgc tgagcgtccg gacgtcgatg
     1981 gcccggagtc cggcatccag ggatcggtag gcgtagggga ggacaaggac cacgtacgcg
     2041 aaggccagcc agatggtcga ctcgccgagg aggtacgtca cccaggcgta caccggcgtc
     2101 agaccgacca ccagcacgat ggccggaacc gtcagtggca gcaggcagag gaactccact
     2161 gcgcgcgtcg ccccgggcac ccgcagccgg acccaggtca tcgtcggcac gagcaggatc
     2221 agcatgatcg ccggggtgag gacggccagg ccggcggacg cgaggaagcc ggtctgcaga
     2281 tcggggtagc gcgtggagat ggcccccagg tccagcagcg tggaccaggt ctgcaggctg
     2341 cggtggccgc tggcggcgcg agtggtgaag tccaggctgc cggccagcgg cgcgaggaag
     2401 aacaccacca ccagcgtgac caccacccgg cgaaggacgt cctggcgtcg ccggaaggcc
     2461 gcccgctgtc cgcgcgcggg gctcaccgga ccagccatcg agaggcacgc cggtcgagca
     2521 cgacgtacgc agtcatgacg accgcgacga cgaccaccat ctccagcgcc atggccttgc
     2581 cgacgttctc ctggccgagc accacctcag agctcagcgt gttgccgatc gccaggggaa
     2641 gcagcggaga gccctgcgag accagagccg cggcagtggc ataggcactg aacgcgttgg
     2701 tgaacaacag cagcagtgcg ccgacgaacg agggcagcag gatcggcccg gccaccgtgc
     2761 gccagtagac gaaggtgctt ccgcccaacg tctcggtggc ttcgcgccac tgcggcttga
     2821 ggccctcgac cgcaggaagg aacacgatga gcatcaacgg gatctggaag tacaggtaga
     2881 ccagcatcag cccctggttc cattcgtaca gccacaggcc gccgttcgag ttcagtcctg
     2941 cgctggtcag caccttcgtc acgtacccct cggcgctgaa cgtggcgagg aacgcgaacg
     3001 cgagggcgac cccgccgaac tgggcgagca ccccgctgag ggaggtgacg aacttcttga
     3061 gtatgccgtc gggccgaccg gtggacacgg catacgcgag cacggcgccg atcagggcgc
     3121 cggccacggc cgtcacggcc gagagcacta ccgagtgcca cagtgcgttc gtcaccgccg
     3181 ggtttcccag ggccttgagg ttggccagtg tcaggccgcc actgtggccg acaaatgcgc
     3241 cgaccacgac gaccagcgtg ggaatgacga ggaagacggt gacgtacgcg aagaagggca
     3301 ccacgccgag cagggcgctc gatggccgac ggccaccgaa cgccctg
//
LOCUS       DASYFY010000663         1938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_362487, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000663 DASYFY010000000
VERSION     DASYFY010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362487"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VGN19_13450"
     CDS             complement(<1..276)
                     /locus_tag="VGN19_13450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEV7196936.1"
                     /translation="MGEEVSAQSYTREQRQRFREKVRQNLDVFERMLSQSQFEFERPM
                     TGMEIELNLVDETYRPKFANAEVLEEIADPGYQTELARYNIELNVPPR"
     gene            454..1629
                     /locus_tag="VGN19_13455"
     CDS             454..1629
                     /locus_tag="VGN19_13455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HEV7196937.1"
                     /translation="MRFLHTSDWHLGRSFHQVGLLDAQAQFVDHLVETVRAEAVDAVL
                     VSGDVYDRAMPAPDTVRLLSEAVTRLIDAGATVVLSSGNHDSAIRLGFASELLSRAGL
                     HIRSATRDVGRPIMVGGVAVYAIPYLEPSVAATALRAEQRTHAGVLRAAMSLVEADRV
                     SRGAPSVVMAHAFVTGGATSESERDISVGGVSAVHPRVFDGIDYVALGHLHRRQRLAE
                     AVQYSGSPVALSFSEAGHTKGSWLVDLVDDGVRAEPVDAPVARPLAVLRGDLDELLAN
                     PAHGAAERAWCQVTLTDSVRPLGAMERLRRRFPHALVLQFDPQGAPMEVRSYAQRASA
                     PTHLEVCCDFLTHVRSGRTATDTEQALLSEALEAVRTSRGERDDEGRADLGAQAGAA"
     gene            1626..>1938
                     /locus_tag="VGN19_13460"
     CDS             1626..>1938
                     /locus_tag="VGN19_13460"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7196938.1"
                     /translation="MRLHRLTVRAFGPFADTVEVDFDTVSANGLFLIRGATGAGKTSL
                     LDAVVFALYADVPGARSKKGLHSGHADRGVVPQVALDFTAGGRLLRVERSPEFSRPKT
                     RG"
BASE COUNT          273 a          674 c          658 g          333 t
ORIGIN      
        1 acgcggcggg acgttgagct cgatgttgta gcgcgcgagc tcggtctggt agccgggatc
       61 cgcaatctcc tcgagcacct cggcgttcgc gaacttgggc cgataggtct cgtcgacgag
      121 gttgagctcg atctccatcc cggtcatggg tcgctcgaac tcgaactggc tctgggagag
      181 catccgctcg aagacgtcga ggttctggcg caccttctcg cggaagcgct gccgctgctc
      241 gcgcgtgtag ctctgtgcgc tcacctcttc gcccacgggc cctcctccgc aataacttcg
      301 gtatgccggt cagccgagct gtgcccctga cccaaccaca ggtgagcact cccctgccac
      361 cacaaggcgc gccccagggg cgcaccgcgg ctgcgtcaat ggcgcgccgc gcaaatcacc
      421 ggccgtgtcg gtgctgtctc ctaacctgca gatgtgcggt tcctccacac ctccgactgg
      481 cacctggggc gctccttcca ccaggtgggg ctgctggatg cccaagcgca gttcgtggac
      541 catctcgtgg agaccgtccg agccgaggcc gttgacgcag tgttggtctc cggtgacgtc
      601 tacgaccggg cgatgcccgc gccggacacg gtccgactcc tgtcggaggc ggtcacccgc
      661 ctcatcgacg ccggggcgac ggtggtgctg tccagcggga accatgactc cgcgatccgg
      721 ctcgggttcg ccagtgagct gctctcgagg gccgggctgc acatccgttc ggcgacacgg
      781 gatgtcggtc gcccgatcat ggtgggcggc gtcgcggtct atgcgatccc ctacctcgaa
      841 ccgtccgtcg cagccactgc cctccgcgcc gagcagcgca cgcatgccgg cgtcctgcgc
      901 gcggccatga gtctcgtcga ggccgaccgt gtgtcacgcg gcgcgccctc ggtcgtcatg
      961 gcgcatgctt tcgtcacggg cggggctacg agtgagtccg agcgcgacat ctccgtcgga
     1021 ggtgtgtcag cggtgcaccc ccgagtgttc gacgggatcg actacgtcgc actgggtcac
     1081 ctgcatcgtc ggcagcgcct tgccgaggcg gtgcagtaca gcgggtcgcc ggtcgcgttg
     1141 tccttcagcg aggcgggcca caccaagggg tcctggctcg tggacctcgt cgacgatggt
     1201 gttcgagctg agccagtgga cgcgcccgtg gcccggccac tggccgtcct gcgaggcgac
     1261 ctcgacgagc ttctggccaa ccccgcccat ggcgccgctg agcgggcctg gtgccaggtc
     1321 accctcacgg actccgtgcg gccactgggt gcgatggagc gactgcgtcg gcggttcccg
     1381 cacgcgctgg tactgcagtt cgacccgcag ggcgccccca tggaggtgcg cagctacgca
     1441 caacgagcca gtgcgccgac tcacctcgag gtgtgttgtg acttcctgac gcatgtccgt
     1501 tccggccgca cggctaccga caccgagcag gcgctgcttt cggaggcact cgaagccgtg
     1561 cggacgtcac ggggcgagcg agacgacgaa ggacgggcgg acctcggtgc ccaagcaggt
     1621 gccgcatgag gttgcatcgg ctcaccgtcc gggccttcgg cccgttcgcg gacaccgtcg
     1681 aggtggactt cgacacggtc agcgccaacg ggctgttcct catccgggga gccaccggcg
     1741 ccggcaagac cagcctgctc gatgcggtgg tcttcgccct ctatgcggac gtgccaggcg
     1801 cgcggtccaa gaagggcctg cacagcggcc atgcggaccg tggggtggtt ccccaggtgg
     1861 ccctggactt caccgctggt ggacgactcc tgcgcgtcga gcgatcgcct gagttctcac
     1921 gccccaagac tcgcggcg
//
LOCUS       DASYFY010000664         1583 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1835890, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000664 DASYFY010000000
VERSION     DASYFY010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1835890"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..622
                     /locus_tag="VGN19_13465"
     CDS             95..622
                     /locus_tag="VGN19_13465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196939.1"
                     /translation="MTAPDPAPAPEGALGPDTVAGGAHRRVLSWIYGLIVTAAVLASA
                     NTKERGWVVAVYVFVTSVVYWAAESYSHLLATRTVRQRPVTAAEVRATLSEGWVLVTA
                     SYLPLLAVVVGTLFGLEVSDTIVIALCVTVVLLCVAGWRASSASGLRGVRLLVSSTVA
                     GCFGIVMILLKFFIH"
     gene            723..1484
                     /locus_tag="VGN19_13470"
     CDS             723..1484
                     /locus_tag="VGN19_13470"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEV7196940.1"
                     /translation="MIGVSQKSDLQILPLNERAGGFIAQAMRDYGAQHPAPLQVIEAG
                     CGREWTIDMGDLAVHLTGIDLDERALEHRRDEVGDLDEAIVADLRTFVPDAGTYDIVY
                     SSYVLEHVQGAEGALDAWLSALVPGGLLVLRVPDGHTVFGFLARRTPFWSHVLYKKYI
                     ERDRMAGTPGHAPYPTVYDDVVSYAGMREYAAARKLEWVGAVGTNPQVSSLGRFAPLG
                     LRVQKGLAALSFGRIAGTHANLTVVLRKPDPSVGS"
BASE COUNT          225 a          508 c          554 g          296 t
ORIGIN      
        1 actgacgtag tccagtcgtc cggaagtggg ggctgtcgcg acgcgacagc ccccacttcg
       61 tctgacatcg tggcgccgtg atgaggcagc gaccatgaca gccccggacc ccgcccccgc
      121 gccggagggc gcgctcggtc ccgacaccgt ggccgggggc gcccaccgcc gggtgctctc
      181 ctggatctac ggactgatcg tgacagccgc cgtcctcgcc tcggccaaca cgaaggaacg
      241 cggctgggtc gtcgccgtct atgtcttcgt gacctcggtg gtgtactggg cggccgagtc
      301 gtactcgcac ctgctggcca cccggaccgt acgccagcgc ccagtgacgg cggcggaggt
      361 gcgtgccacc ctcagcgagg gctgggtcct tgtcaccgcg tcgtacctgc cgctgctggc
      421 tgtcgtcgtt ggcacgttgt tcggcctgga ggtcagcgac accatcgtca tcgccctctg
      481 tgtgactgtg gtgctgctgt gcgtggcggg ctggcgggcc agctcggcca gcggcctgcg
      541 aggcgtcagg cttctggtgt ccagcacggt cgcgggctgt ttcgggatcg tcatgatcct
      601 gctgaagttc ttcatccact gacgacttcg gtcttggacg aagcccgcac tggcctgcgc
      661 gctgctagcg tgatcggaac ggctggtgtt cttactcgcc cgaccaacgt gagggcctac
      721 tcatgatcgg tgtcagccag aagtcggacc tgcagatcct gccgctgaac gagcgggcag
      781 ggggcttcat cgcccaggcc atgcgtgact acggcgccca gcaccccgcg ccgctgcagg
      841 ttatcgaggc ggggtgcggg cgagagtgga cgatcgacat gggtgacctg gcggtgcatc
      901 tcacggggat cgaccttgac gaaagggccc tcgagcatcg tcgtgacgag gtcggagacc
      961 tcgacgaagc gatcgtcgcg gacctgcgaa cgttcgtacc tgatgcgggg acgtacgaca
     1021 tcgtctactc gtcgtacgtg ctggagcacg tccagggtgc tgagggggcg ctcgacgcct
     1081 ggttgtcggc cctggtgcca gggggcctgc tggtgctgcg ggttccggat gggcacactg
     1141 tcttcggctt cctggcccgc cggacgccgt tctggtccca cgtgctgtac aagaaataca
     1201 tcgagcgcga ccgaatggca ggtacacccg ggcacgctcc ttatcccacc gtctatgacg
     1261 acgtggtgag ctacgcgggg atgcgggagt atgcggcagc tcgcaagctc gagtgggtcg
     1321 gcgcggtggg gaccaacccg caggtctcct cgctgggtcg tttcgcaccc ttgggccttc
     1381 gggttcagaa gggccttgcg gcgttgtcgt tcgggcgcat cgccggcacc catgcgaacc
     1441 tcacggtcgt gctgaggaag ccggacccgt cagtggggag ctgacttgtt ctccccgggg
     1501 cttctgggct ttcgccggcc gtcgatcaga cggcgccgcg aaggcgtacc gacaggcagg
     1561 tgacgcagcc ttcgagcttc tcg
//
LOCUS       DASYFY010000665         3201 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_731730, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000665 DASYFY010000000
VERSION     DASYFY010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731730"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..994)
                     /locus_tag="VGN19_13475"
     CDS             complement(8..994)
                     /locus_tag="VGN19_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEV7196941.1"
                     /translation="MQIAITGSIATDHLMTFKGRFRDSLVVEQLDKVSLSFLADDLEV
                     RRGGVAANIAFGMAGLGQRPILVGAVGEDFADYRSWLERHGVDCASVHVSESKHTARF
                     VCTTDEDMAQIATFYAGAMSEARGIELGPIADRVGGLDLVLIGANDPEAMLRHTRECR
                     SRGIPFAADPSQQLAFADGDTIRQLIDGADYLLTNEYEAALTEKKTGWTSQEIADRVT
                     TRVTTKGKDGVVIERQGEEPVEVTVAREVRRADPTGVGDAFRAGFLTGLAADLGLRHA
                     AELGSMLATYVIETVGTQEYTLGKQRFLQRLAEAYGSESAEAIAPHITCIAP"
     gene            1105..1317
                     /locus_tag="VGN19_13480"
     CDS             1105..1317
                     /locus_tag="VGN19_13480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196942.1"
                     /translation="MSLTPLQGDPLVFPSTRDGLDTGSIAELVADCLGVHLDVHQARP
                     WPLHGQAIAVPDDASSLVEGLGTYGS"
     gene            1390..2115
                     /locus_tag="VGN19_13485"
     CDS             1390..2115
                     /locus_tag="VGN19_13485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010524779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin family protein"
                     /protein_id="HEV7196943.1"
                     /translation="MTESAISEFDFGGLRATFINCTLKRSPETSNTQGLIDVSAAIMA
                     KHGVEVEVLRAVDHDIATGVYLDMTEHGWERDEWPTLFAKLLDSDILVIAGPIWLGDN
                     SSVTKRIIERLYAGSSMTNASGQYVYYGKVGGAIITGNEDGIKHCASNILYSLQHVGF
                     SIPPGADAGWIGEAGPGPSYLDPGSGGPENEFTQRNTTFMTWNLMHLARLLRDGGGFP
                     VGGNQRTEWDAGARFDYVNPEYR"
     gene            complement(2218..2604)
                     /locus_tag="VGN19_13490"
     CDS             complement(2218..2604)
                     /locus_tag="VGN19_13490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HEV7196944.1"
                     /translation="MSVQDQTAPAIETTDAPAEASHGVLLSDVAAIKVKSLLEQEGRD
                     DLRLRVGVQPGGCSGLIYQLYFDERTLDGDLVRDFDGVEVVVDRMSAPYLEGASIDFA
                     DTIEKQGFTIDNPNAGSACACGDSFS"
     gene            complement(2699..>3201)
                     /locus_tag="VGN19_13495"
     CDS             complement(2699..>3201)
                     /locus_tag="VGN19_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEV7196945.1"
                     /translation="ALEGALGRFVEVVRRTLPETADLLTGKPRRVDKEPGAGAAGGLG
                     YALYLLGGRRVSGVEEVLRAVGFRELAAAADLVVTGEGCFDWSSLQGKVVAGVAELAL
                     STATPSIVIAGQTLVGRREAMTLGLSGTYAVADTPTAVEAAMADPVGTLTARAARVAA
                     TWSPSR"
BASE COUNT          529 a         1130 c         1050 g          492 t
ORIGIN      
        1 ctgctgccta gggggcgatg caggtgatgt gaggcgcgat cgcctccgcg gactcggacc
       61 catacgcctc ggccaagcgc tgcaggaagc gctgcttgcc tagcgtgtac tcctgcgtgc
      121 ccaccgtctc gatgacatag gtcgcgagca tggagccgag ctctgcggca tgtcgcagac
      181 ccaggtccgc cgcgaggccg gtgaggaacc cggctcggaa ggcatcgccg acaccagtgg
      241 ggtcagcccg acgcacctca cgggccaccg tgacctcgac aggctcctcg ccctgtcgct
      301 cgatgaccac gccatccttg cccttggtgg tgactcgggt cgtgacgcgg tcggcgatct
      361 cctgggaggt ccacccggtc ttcttctccg tcagcgccgc ctcgtactcg ttggtgagca
      421 gatagtccgc accgtcgatc agctgccgga tcgtgtcacc gtcggcgaat gccagctgtt
      481 ggctcgggtc ggcggcgaac gggatgcctc gagaacggca ctcccgggtg tggcgcagca
      541 tcgcctcagg gtcgttggcc ccgatgagca ccaggtccag cccgccgaca cggtccgcga
      601 tcggccccag ctcgatcccc cgggcctcgc tcatcgcccc ggcgtagaac gtcgcgatct
      661 gggccatgtc ctcgtcggtc gtgcagacga agcgggcggt gtgcttggac tccgacacgt
      721 gcaccgacgc acagtccacc ccatggcgct cgagccagct gcggtagtcc gcgaagtcct
      781 cccccacggc acccaccaga atcggtcgct gaccgagtcc ggccatgccg aaggcgatgt
      841 tcgcggccac gccgccacgt cggacctcga ggtcgtcggc gaggaacgac aaggacacct
      901 tgtcgagctg ttcgacgacc agggagtcgc ggaaccgccc cttgaacgtc atgaggtggt
      961 cggtggcaat ggacccagtg atagcaatct gcacccacga aacctacccg gtccgcaggt
     1021 ctgtggcagg acacccggtt accggcgagt gttacgcacc agtaccggcg tgtcgcggtc
     1081 gtcacactgc ctaccgtggg ccccatgagc ctcacccccc tgcagggcga ccccctcgtg
     1141 ttccccagca ctcgcgacgg cctcgacacc ggcagcatcg ccgagctcgt ggctgactgc
     1201 ctgggcgttc atctcgacgt tcaccaggcc cggccgtggc cgctgcacgg acaggccatc
     1261 gcggtgcccg acgacgcgtc ctcgctggtc gaaggtctgg gcacctacgg ctcctgacgt
     1321 agtcagcatc ccgcccgacc catacccctt gccgttgccg tgtctcgcca ggtcagggag
     1381 gctcggccaa tgactgagtc agcgatcagc gagttcgact tcggtggcct gcgcgccact
     1441 ttcatcaact gcacgctcaa acgctccccg gagaccagca acacccaggg gctgatcgac
     1501 gtgagcgccg ccatcatggc caagcacggg gtggaggtcg aggtgctgcg ggcggtcgac
     1561 cacgacatcg ccaccggggt ctatctcgac atgaccgagc acggctggga acgggacgag
     1621 tggccgacgc tgttcgccaa gctcctcgac agcgacatcc tcgtcatcgc cggcccgatc
     1681 tggctgggtg acaactcgag cgtcaccaag cggatcatcg agcggctgta tgccggctcc
     1741 tccatgacca atgccagtgg gcagtacgtg tactacggca aggtcggcgg agcgatcatc
     1801 accgggaacg aggacggcat caagcactgc gcctccaaca tcctctacag cctccaacac
     1861 gtcggcttca gcatcccgcc gggggcggat gcggggtgga tcggcgaggc cgggccaggc
     1921 ccgtcctacc tcgacccagg tagcggtggt ccggagaacg agttcaccca acggaatacg
     1981 acgttcatga cgtggaacct catgcacctg gcgcgactac tgcgcgacgg cggcgggttc
     2041 ccggtgggcg gcaaccagcg caccgagtgg gacgcgggcg cccggttcga ctacgtcaac
     2101 ccggagtacc gctagctgtg atgtccagcc acgtggggcg tgcggcatac cgccccgcgt
     2161 gtcggccaca gcgcagcggg ccccccaccg acggtggagg gcccgctgcg tcgtggctca
     2221 gctgaaggag tcgccgcagg cgcaggcgct gcccgcattg gggttgtcga tcgtgaagcc
     2281 ctgcttctcg atggtgtcgg cgaagtcgat gctggcgccc tcgaggtacg gggcactcat
     2341 ccggtcgacg acgacctcga caccgtcgaa gtcgcgcacc aggtcgccat cgagggtgcg
     2401 ctcgtcgaag tagagctggt agatgaggcc cgagcagcca ccgggctgca cgcccacgcg
     2461 caggcgcagg tcgtcgcgtc cctcctgctc cagcagggac ttgaccttga tggcggcgac
     2521 atcagagagc agcacgccat gtgacgcctc agcaggcgcg tcggtggtct cgatcgccgg
     2581 agcggtctgg tcctgaacac tcatgtgatg cgtccttcat gtcggtggag ggggccactt
     2641 ggaccaaccc acggatcgcg cgaaatgttc cccgcacaga gtccactgta cgtcgtggtc
     2701 agcgcgaggg ggaccaggtg gccgcgacac gggcggcccg ggccgtcagc gtgccaaccg
     2761 ggtccgccat ggccgcctcg accgccgtgg gggtgtccgc cacggcatag gtgccggaca
     2821 agcccaaggt catcgcctcc cggcgcccca ccagggtctg accggcgatc acgatgctcg
     2881 gggtggccgt ggagagggcc agctcggcca cccccgcgac gaccttgccc tgcaggcttg
     2941 accagtcgaa acacccctca ccagtgacca ccaggtccgc ggcggcggcg agctcgcgga
     3001 acccgacggc tcggagcacc tcctcgaccc cactgacgcg cctgcctccc agcaggtaca
     3061 acgcatagcc gagaccgcct gcggcgccgg cgcccggctc cttgtcgacg cgacgaggct
     3121 tgccggtcag caggtcagcg gtctcgggca gcgtgcggcg caccacctcg acgaacctgc
     3181 ccaaggcacc ctcgagggcc t
//
LOCUS       DASYFY010000666         8583 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1468233, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000666 DASYFY010000000
VERSION     DASYFY010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8583
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1468233"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..691)
                     /locus_tag="VGN19_13500"
     CDS             complement(143..691)
                     /locus_tag="VGN19_13500"
                     /inference="COORDINATES: protein motif:HMM:NF024791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytR C-terminal domain-containing protein"
                     /protein_id="HEV7196946.1"
                     /translation="MRVGYMVEAGASSSRRARRRRAFITLVVVALLLFSAFWYAYSYF
                     RESSSTPVAQPSVTATCTARPKGPTPASTVVNVYNSTQRSGLAAATAKQVRQRGFAVS
                     TVSNDPLQKTIAGPAEIRFGTAGATRGALVLTLVKGATAVHDARTDQSVDLVLGQAFT
                     ALAPPPRTATPAKGVAPTSGGC"
     gene            complement(754..1050)
                     /locus_tag="VGN19_13505"
     CDS             complement(754..1050)
                     /locus_tag="VGN19_13505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019135312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapB family
                     antitoxin"
                     /protein_id="HEV7196947.1"
                     /translation="MIFKKVGEGRPYPDHGKETPRDWAGVPPRQVRLDELVTTKRNLD
                     LGFLLAEDSTFYGDLFAHVVEWQGTLYLEDGLHRALRAALQQRPTLHARVLVLD"
     gene            complement(1129..2055)
                     /locus_tag="VGN19_13510"
     CDS             complement(1129..2055)
                     /locus_tag="VGN19_13510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEV7196948.1"
                     /translation="MQGVLTGFAAIAAVIAVGALLAQLRIVDLSAQLVLSRIAFFVAS
                     PCLMVVTLSRANVHTVLSSNLVASVSGVVVAAGAYVILARLVWHRGLGETTVGALSAA
                     YVNAGNLGIPVASYVLGNAAYVAPTLLLQLIVLQPLALAVLDTDARDTASRWWVLASR
                     PLRNPLTVGSLLGVLLSLTGWTLPGAVLDPLELLGNMAVPSMLLAYGIALRLGPGLGK
                     AGSVAELATTSGLKLVAQPVVAWFVASTLLGVHGHALLAIVVTSALPTAQNIFVHATR
                     YERATVLARDTILITTVGAVPVILALTWLLGT"
     gene            complement(2082..2169)
                     /locus_tag="VGN19_13515"
     tRNA            complement(2082..2169)
                     /locus_tag="VGN19_13515"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2133..2135),aa:Ser,seq:gga)
     gene            2269..2367
                     /gene="ffs"
                     /locus_tag="VGN19_13520"
     ncRNA           2269..2367
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VGN19_13520"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            2496..2801
                     /locus_tag="VGN19_13525"
     CDS             2496..2801
                     /locus_tag="VGN19_13525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196949.1"
                     /translation="MGTDLAGGGRDDPTDRGSRWSALAIVAAVLAWLGGVLLHVLGVL
                     GPVVAVVGLVGGVVAALRERRRPWHVAVLVATLASLAAVILYALVLTSAVSWPPTDW"
     gene            2874..5057
                     /locus_tag="VGN19_13530"
     CDS             2874..5057
                     /locus_tag="VGN19_13530"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma and tau"
                     /protein_id="HEV7196950.1"
                     /translation="MSTALYRRYRPESFADVIGQEHVTEPLMQALRTGRVNHAYLFSG
                     PRGCGKTTSARILARCLNCEQGPTPEPCGTCDSCVALARGGPGSVDVIEIDAASHGGV
                     DDARDLRERASYGPAQSRFKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEP
                     EKVIGTIRSRTHHYPFRLVPPGQLSDYLQRLCEAEHVAVAPGVLSFVTRAGGGSVRDS
                     LSVLDQLIAGSGEAGLTYESAAALLGFTDGELLDATIDAFAAADAAGVFHQIDRVIET
                     GLEPRRFVEDLLERLRDLIVVAAVPDGASSVLRGLPEDQLERMRQQSAAFGAGGLSRA
                     ADIVNTGLTEMTGATAPRLQLELICARVLLPGASGESGYAARLDRLERRLDVEGVPSV
                     ARVARTEQAEAPAMGTPEVELPKAELPKAELPKADLPKAEPVVASPMPEPPSEPQTEP
                     QTPAAPAAPAAPAVEPESPSTPPERAVAQVPPESPRPSGGIDTAAIRRAWPDILGWIF
                     KHKRTTWTLLSEHATVHDFDGSKVVLAISTTGIANTFRHGPHADLVRQALIDVLGVDA
                     RVEGIPTPDASPSSSPSTSPSSSPAPHAASPQSDQTRDPDRRSAPTAATDQPPSAARR
                     TAPTTGRAPESGDGGWAAAPSSPDSGPSWAAPVDAEQAVASTTSRLQRARAEVAAESP
                     AGPVRTHVADDSAASADDEDIEALGEVGRPVIERLLGGRVIDEGT"
     gene            5057..5599
                     /locus_tag="VGN19_13535"
     CDS             5057..5599
                     /locus_tag="VGN19_13535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196951.1"
                     /translation="MARSAWARPTPDERSAVLPGDDVVAPADVVMDRAFTVVARPDEV
                     WPWLVQLGKNRAGWYLPGWLERVVPVSRRGIRQLDPRLLDLAAGAVVPDWGGADATFT
                     VVSIQPPSHLLYGSTRGRVALTWCLFLSEAPGGATRVHLRLRLAPVRHRLLAISAGGL
                     LDLLTVMGLAAGLRERLRQT"
     gene            5698..6297
                     /gene="recR"
                     /locus_tag="VGN19_13540"
     CDS             5698..6297
                     /gene="recR"
                     /locus_tag="VGN19_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020124031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HEV7196952.1"
                     /translation="MYEGVVQDLIDELGRLPGVGPKSAQRIAFHLLQSDVIDVKRLVD
                     ALTEVKAKVRFCETCGNIAEGVQCRICADPRREVASICVVEEPKDVVAIERTREFRGR
                     YHVLGGAISPIDGVGPDDLRIKELMTRLASGEVTEIIIATDPNLEGEATASYLARFLR
                     PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV"
     gene            6290..6841
                     /locus_tag="VGN19_13545"
     CDS             6290..6841
                     /locus_tag="VGN19_13545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5063 domain-containing protein"
                     /protein_id="HEV7196953.1"
                     /translation="MSDELRILADESAHDARAYLSTITEVASGSAPDAAIAMTLLALS
                     QVLVMGARLGAIKDIVPAERFETDTLDPELDPLRTGVANLFEGLDEYADLVDPVTSTE
                     LATGSLSNDVTVVAAALAHGLRHHDAGRLSEALWWWQFSYLSDWGERAASALRVLQSL
                     LGHIRLDADQETVSDAEFDALHP"
     gene            complement(6877..7974)
                     /locus_tag="VGN19_13550"
     CDS             complement(6877..7974)
                     /locus_tag="VGN19_13550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012725594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7196954.1"
                     /translation="MSWHGIRTVAALELRQRVRTSRWPIVLGLWFVTVGLVTLLAYLA
                     TNNPQLQSGQAMYDIVVFFVLGLAMLIVPSLTATSVNGDREHGVLATLQTTLLTPWEI
                     TVGKLLAAWAVALTFLATSLPFLAWAWFEGGLGVGRIALSLIVLILVLAVVCAIGLMF
                     STLTARTVSSAVLTYLTIGALVFGTTIGFGLSAFLVTHPEQQKVYGLSANWWSTHQPT
                     AANPGGPVVPTVADCTQYTERRPVTHTERIWWMLPLNPFVVVADAAPSEPRAGSASSA
                     GFTPLRWISAGARLARKGPDAVANECLSEVTATQPGGAPSDPIAGALKSAPVWPYGLT
                     FLLLAGAGSVVVSARRLRTPLRRLPSGTRIA"
     gene            complement(7971..>8583)
                     /locus_tag="VGN19_13555"
     CDS             complement(7971..>8583)
                     /locus_tag="VGN19_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012877060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7196955.1"
                     /translation="AAYRMPSAQARNRTEELLHTVHLADLADRRARVLSRGQKQRLGL
                     ARALINDPSVLLLDEPASGLDPRSRIELRDVLRSLAAQGKTVLVSSHILTELQEVADR
                     AVIVARGRTIATESFDDALATAPRAWRIDSLDGERLAAWLADHHVPAARVGGGLTEVE
                     VGGEEMAARLLADLVTDGIRVTAFAPSQGALESAYLAATEDRR"
BASE COUNT         1310 a         2952 c         3038 g         1283 t
ORIGIN      
        1 ttcggctggt cgatggtgaa ccggtctccg ggcgcgggct cccagagcac gccggcggag
       61 gcgagtcgac gggcgagctc gaccgtgatc atggttcgag cctacggctg agctggggcg
      121 ccgtcagctc gatcacggcc cctcagcaac cccccgaggt cggcgccacg cccttggcag
      181 gagtggccgt cctgggcggg ggcgcgagcg ccgtgaacgc ctgcccaaga acgagatcca
      241 ctgactggtc tgtgcgtgcg tcgtgcaccg ccgtcgcacc cttgaccagg gtgagcacca
      301 gggcgccgcg ggtcgcgccc gctgtcccga agcgtatttc cgcgggcccg gcgatggtct
      361 tctgaagcgg gtcgttcgac accgtcgaga cggcgaagcc ccgctggcgg acctgcttcg
      421 cagtggccgc ggccaggcca cttcgttggg tggagttgta gacgttgacg acggtgcttg
      481 ccggcgtggg acccttcggc ctggcggtgc aggtcgcggt gacgcttggc tgggcgaccg
      541 gcgtggacga tgactcccgg aagtacgagt acgcgtacca gaacgcgctg aagagcagca
      601 acgccaccac gacgagggtg atgaaggcac gtcgtcgtcg tgcccgacgc gagctcgacg
      661 cccccgcctc caccatgtag cccactcgca cacctccggc cctcggcccg gtcgccgacc
      721 gctggagggt cccgaaggac gcccccgctg gggtcagtca agcacgagga cgcgtgcgtg
      781 gagggtcggt cgctgttgaa gggcggccct cagcgcgcga tgcagcccgt cctcgagata
      841 gagcgttccc tgccactcca cgacgtgggc gaacagatcg ccatagaacg tggagtcttc
      901 ggcgagcagg aaccccaggt ccaagttgcg cttggtggtg accagctcgt ccagccggac
      961 ctgccggggc ggaaccccgg cccagtcccg cggagtctcc ttgccgtggt ccgggtatgg
     1021 ccgcccctcg cccaccttct tgaagatcac ccagccactg tagaggcatg ggccgcgggg
     1081 cctcacgtcc gacagtgcga gggcttctca gggctagcga cgtcctagct atgttcccaa
     1141 cagccaggtg agcgccagga tgaccgggac cgcgccgacc gttgtgatga ggatcgtgtc
     1201 gcgcgcgagg accgtggccc gctcgtaccg cgtggcgtgc acgaagatgt tctgtgcggt
     1261 cggcagggcc gaggtgacca cgatggcgag cagcgcgtgc ccgtggactc ccagcagcgt
     1321 gctggcgacg aaccaggcca cgacgggttg ggccaccagc ttcagtcccg acgtggtcgc
     1381 cagctcggcg accgagcccg ccttacccag gccaggcccc aggcgcaacg cgatgccata
     1441 ggcgaggagc atgctcggaa cggccatgtt gcccagtagc tcgagcgggt ccaagaccgc
     1501 ccccggcaac gtccatccgg tcaacgagag caggacgccc agcagcgagc ccacggtgag
     1561 ggggttgcgc agcggtcggc tcgcgagcac ccaccatcgg ctcgctgtgt cgcgcgcgtc
     1621 ggtgtcgagg accgcgagcg cgagcggctg gagcacgatc agctgcaaca gcagggtcgg
     1681 ggcgacgtag gcggcgttgc cgagcacgta gctggccact gggatgccga ggttgcccgc
     1741 gttgacgtat gccgcggaca acgcacccac agtggtctca cccagaccgc ggtgccacac
     1801 cagccgcgcc aggatgacgt acgccccggc ggccacgacg accccgctga ccgaggccac
     1861 caggttcgag gagagcaccg tgtgcacgtt ggcccggctc agggtcacca ccatgaggca
     1921 gggactggcg acgaagaacg cgatccgcga cagcaccagc tgggcgctga ggtcgacgat
     1981 cctcagctgc gcgagcaagg cgcccacggc aatgacggcg gcgatggccg cgaacccggt
     2041 gagcactccc tgcacggaga caggctaggg gtgacgtcgt gtggcggagg ataggggatt
     2101 cgaacccctg agagctttca ctcaacacgc tttccaagcg tgcgcactag gccactatgc
     2161 gaatcctccg ccgaggaggc taccggagca cccgccctgg cctgaaatcg ctgtcttcgc
     2221 ggccaggggc cgagtcccgg ccatgaccgg cgaaccagta gactcgacga cggcaccccg
     2281 cgtggtggta cctctccgaa ctcccccagg gcaggaatgc agcaagggta ggagagctct
     2341 tccaggtacg tggggtgtcc ctttttgccc acgctcccgg ccctcctcgg catagggccg
     2401 gcctctaccg ggccggatgc cgtgcaggca agcggctatt cgaggttcct atagccgctt
     2461 gcgcatgagc ccctgcggac tcgtaggttc cagtcgtggg cacagacttg gcgggcggtg
     2521 gtcgcgacga ccccacagat agagggtcgc gctggtcggc cctcgccatc gtggcggcgg
     2581 tgctcgcctg gttgggcgga gtcctgctcc acgtcctcgg cgtgctgggg ccggtcgtag
     2641 cggtcgtggg cctcgtcggg ggcgtggttg cggccctgcg cgaacgccga cgcccatggc
     2701 acgtcgcggt gctggtggcc acgctggcca gcctcgccgc tgtcatcctc tatgccctcg
     2761 tcctgacctc tgcggtgagc tggccaccga cagactggtg aggcatcgag cctgcgcaca
     2821 ggcggtcggg ccagctctgt ctggtgtcgt gagtggcgac tagggttccg atcgtgagca
     2881 ccgccctgta ccgccgctac cggcccgagt ccttcgccga cgtgatcggc caggagcacg
     2941 tgaccgagcc gctgatgcag gccttgcgca ccggccgcgt caaccacgcg tacctgttct
     3001 ccggaccgcg cgggtgtggc aagacgacca gtgcgcgcat cctcgcccgg tgcctcaact
     3061 gcgagcaggg gccgaccccc gagccgtgcg gcacctgcga ctcctgcgtt gccctggcgc
     3121 gtggcgggcc cggttcggtc gacgtgatcg agatcgacgc cgcgagccac ggtggtgtcg
     3181 atgacgcccg tgacctgcgc gagcgcgcgt cctatggccc ggcccagagc cgcttcaaga
     3241 tctacatcat cgacgaggcg cacatggtga cgccgcaggg cttcaacgcg ctgctcaaga
     3301 tcgtcgagga gccgcccgag cacgtgaagt tcgtgttcgc gacgaccgag cccgagaagg
     3361 tcatcggcac catccgctcg cgcacccacc actatccgtt ccggctcgtc cctccgggtc
     3421 agctgtccga ctacctccag cggctctgcg aggccgagca cgtcgcggtc gctcccgggg
     3481 tgttgtcgtt cgtcacgcga gccggtggcg gctcggtgcg tgactcgctc tcggtgctgg
     3541 atcagctcat cgcggggtcg ggcgaggcgg gactgacgta cgagagcgcg gcggccctgc
     3601 tggggttcac cgacggcgag ctgctcgacg ccaccatcga cgctttcgcg gcggccgacg
     3661 cggcaggggt gttccaccag atcgaccggg tcatcgagac aggactcgag cctcggcggt
     3721 tcgtcgagga cctcctcgag cggctgcgtg acctgatcgt cgttgccgcg gtcccagatg
     3781 gcgcctcctc ggtgctgcgg gggctcccgg aggaccagct cgaacgaatg cgccagcagt
     3841 cggccgcctt tggagccggt ggcctgtccc gtgccgccga catcgttaac accgggctca
     3901 cggagatgac cggggccacc gcgccacggc tccagctcga gctgatctgc gcgcgggtgc
     3961 tgctgcccgg cgcctccggc gaaagcgggt atgccgcccg gctcgaccgc ctcgagcgtc
     4021 gcctggacgt ggagggagtg ccctccgtcg cgcgggtggc gcggaccgag caggccgaag
     4081 cgccagccat ggggacgccg gaggtcgagc tacccaaggc tgagctcccc aaggctgagc
     4141 tccccaaggc tgacctcccc aaggctgagc cggtcgttgc gagcccgatg cccgagccgc
     4201 catctgaacc ccagaccgaa ccccagaccc cggcggcccc ggcggccccg gcggccccgg
     4261 cggttgagcc ggagtccccg agcaccccac ccgagcgggc ggtcgcccag gtgccccctg
     4321 aaagccctcg gcccagtggg gggatcgaca ctgccgcaat ccgccgcgcg tggccggaca
     4381 tcctcggctg gatcttcaag cacaagcgca ccacgtggac cctgctgtcc gagcacgcga
     4441 ccgtgcacga cttcgacggg tcgaaggtgg tcctcgccat ctcgacgacg ggcatcgcca
     4501 acacgttccg gcacggcccg cacgccgacc tggtccgcca ggccctgatc gacgtgctgg
     4561 gcgtggatgc gcgggtcgag ggcattccga cgccggacgc ttccccatcg agttctccgt
     4621 cgacctcccc gtcgagctca ccggcgcccc acgccgcgag cccacagtcg gaccagacgc
     4681 gcgacccgga tcgtcggtcg gctccgaccg ctgcgacaga tcagccgcca tcggccgcgc
     4741 ggaggaccgc tccgacgacc ggtcgggcgc ctgagtccgg cgacggcggg tgggcagctg
     4801 ccccctccag cccggacagc gggccgtcct gggcagcgcc ggtggacgcc gagcaggccg
     4861 ttgcttcgac gacctcccgg cttcagcgag cccgggctga ggtggccgcc gaatcacccg
     4921 caggccctgt ccggacccat gtggcggacg acagcgcggc gagtgccgac gacgaggaca
     4981 tcgaggctct cggtgaggtc ggccgtcccg tcatcgagcg tctgctcggt ggaagggtca
     5041 tcgacgaggg cacgtgatgg ccaggtccgc gtgggctcgc ccgacgcccg acgaacggtc
     5101 tgccgtcctg cccggcgatg acgtggtcgc gccggcagac gtcgtcatgg accgagcttt
     5161 caccgtcgtt gccaggcccg acgaggtctg gccttggctc gtccagctgg gcaagaaccg
     5221 ggccggctgg tacctgcccg gctggctcga gcgggtcgtc ccggtgtcgc gacgcggcat
     5281 acgtcagctc gacccacgcc ttcttgacct ggcagcgggc gccgtggtcc ccgactgggg
     5341 tggcgcggac gcgacgttca ccgtggtgtc catccagccg ccctcgcacc tgctgtacgg
     5401 ctcgacgcgc gggcgggtcg cactgacctg gtgcctcttc ctgtcggagg cgcccggggg
     5461 cgcgacccgg gttcacctgc ggctgcggct cgcgcccgtc cggcaccggc tcctcgccat
     5521 cagcgcgggc ggtctgctgg acctcctgac ggtcatgggg cttgccgcgg ggctgcgaga
     5581 gcggctgcgc caaacctgag gcaacccgcc aaccctgaga ccaccccgtc ggggttccct
     5641 cgtgggcaca ccgcgccgcc gcgccgcatc ggtgcgggca gggcataggc tcgacgtgtg
     5701 tacgagggtg tggtgcagga cctgatcgac gagctggggc gactgcccgg ggtcggtccc
     5761 aagagcgccc agcggatcgc cttccatctg cttcagtccg acgtcatcga cgtcaagcgc
     5821 ctcgtcgacg ccttgacgga ggtcaaggcg aaggtgcggt tctgtgagac ctgcggcaac
     5881 atcgccgagg gcgtgcagtg caggatctgc gcagaccccc gtcgtgaggt ggcctcgatc
     5941 tgcgtcgtgg aggagcccaa ggacgtggtt gccatcgagc gcacccgtga gttccgcggc
     6001 cgctaccacg tcctcggtgg agcgatcagc ccgatcgatg gagtcggtcc cgacgacctg
     6061 cggatcaagg agctgatgac gcggctcgct tcgggtgagg tcaccgagat catcatcgcc
     6121 acggacccga acctcgaagg tgaggcgacg gccagctacc tggcaaggtt cctgcgaccg
     6181 atggggttgc gggtgaccag gctcgcttcc ggcctgcctg tgggtggaga cctggagtat
     6241 gccgacgagg tgacgctcgg tcgagcgttc gagggtagga ggttgctgga tgtctgacga
     6301 gctgcgcatt ctcgccgacg agtcggcgca cgacgcgcgt gcctacctgt ccaccatcac
     6361 cgaggtggcc tcggggtcgg cgccggacgc cgccattgcg atgaccctcc tggccctgtc
     6421 gcaggtactg gtcatgggcg cccggcttgg cgcgatcaag gacatcgtcc ccgccgagcg
     6481 gttcgagaca gacaccctcg atccggagct cgaccccctg cggaccggcg tcgcgaacct
     6541 cttcgaaggc ctcgacgagt acgcggacct cgtggatccg gtcacctcga ccgaactagc
     6601 cactgggtcc ctgtccaacg acgtgaccgt ggtggcggcg gcgttggcgc acggtctgcg
     6661 tcaccatgac gcggggcggc tgtcagaggc gttgtggtgg tggcagttca gctacctctc
     6721 ggactggggt gagcgcgctg cctcggcgct tcgggtgctc cagtccttgc tgggccacat
     6781 ccgtcttgac gcggaccagg agacggtctc ggacgcggag ttcgacgcgc tgcacccctg
     6841 agggatgacg cgctgaaccc tgaggaatcc ctctgactaa gcgatgcgcg taccgctggg
     6901 gaggcgacgc aggggggtgc gcaaccgtcg agcggagacc acgacggagc ccgccccggc
     6961 cagcagcagg aacgtgagcc catagggcca caccggggct gacttcaggg cgccggcaat
     7021 cggatcgctc ggcgcgccac ccggctgggt cgcggtcacc tcggaaaggc attcgttggc
     7081 cacggcgtcg ggccctttcc gcgccaggcg cgccccggcg ctgatccagc gcaacggggt
     7141 gaaacccgcc gacgacgcag aaccggcccg cggttcggac ggtgcggcgt cagccaccac
     7201 gacgaagggg ttgagcggga gcatccacca gatccgctcg gtgtgggtca ccggtcgccg
     7261 ctctgtgtac tgcgtgcagt cggccaccgt gggaaccacg ggcccgccgg ggttggccgc
     7321 ggtgggttgg tgagtgctcc accagttggc ggacaggccg tacaccttct gctgttcagg
     7381 atgggtcacg aggaaggcgc tgagcccgaa gccgatggtc gtcccgaaga cgagagcgcc
     7441 gatggtgaga taggtcagca ccgccgacga gacggtccgg gcggtcaggg tcgagaacat
     7501 cagcccgatc gcacagacga cggcgagaac gaggatcagc acgatcagcg acagcgcgat
     7561 cctgccgacg ccgaggccgc cctcgaacca cgcccaggcg aggaagggaa gggaggtcgc
     7621 gaggaacgtc agcgcgacag cccaggcggc gagcagcttg cccaccgtga tctcccacgg
     7681 cgtgagcagg gtggtctgca gggtggccag gacgccgtgc tcccgatcac cgttcaccga
     7741 ggtcgcagtc aaggacggga cgatgagcat ggccagcccg aggacgaaga agaccacgat
     7801 gtcgtacatc gcttgacccg actgcagctg tgggttgttc gtcgcgaggt aggcgagcag
     7861 ggtcacgagt ccgacggtga cgaaccacag gccgagcacg atcggccagc gtgaggtacg
     7921 gacccgctga cgcagctcca gggctgcgac agtccggatg ccgtgccagc tcatcgcctg
     7981 tcctccgttg ccgcgaggta cgccgactcg agcgcgccct ggctgggtgc gaaggcggtg
     8041 acccggatcc cgtccgtgac gagatcggcc agcaggcgtg ctgccatctc ctcgccaccc
     8101 acttcgacct cggtgaggcc gccgcccacg cgggcagccg gcacgtggtg gtccgctagc
     8161 cacgctgcca accgttcgcc atccagcgag tcgatgcgcc aggcgcgtgg cgccgtggcg
     8221 agcgcgtcgt cgaagctctc ggtcgcgatg gtgcggccgc gggcgacgat gacggcccgg
     8281 tcggccacct cctgaagctc ggtgagaatg tggctgctca ccagcaccgt cttcccttgc
     8341 gctgcaaggg atctgagcac gtcgcgcagc tcgatgcggc tgcgcgggtc gagtcccgag
     8401 gcgggttcgt cgagcagcag gacgctgggg tcgttgatca gcgcgcgggc cagaccaagg
     8461 cgctgcttct gcccccggga cagcacgcgt gcccgccgat ctgccaggtc cgcgaggtgg
     8521 acggtgtgga gcagctcctc ggttcggttt cgtgcctgcg ccgaaggcat ccggtatgcc
     8581 gcg
//
LOCUS       DASYFY010000667         1522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1730330, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000667 DASYFY010000000
VERSION     DASYFY010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1730330"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /locus_tag="VGN19_13560"
     CDS             <1..1275
                     /locus_tag="VGN19_13560"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015779124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEV7196956.1"
                     /translation="LIGLDESLRPLTPLLTWADSRAAQEAAELRASSEAMALHRTSGT
                     PVHPMSPLTKLLWFDRHEPELGAKARAWVGLKDYVLHALTGTLATELSSASGTGMLDV
                     STRTWNPRALEIAGVREDQLPPVLSTSAVLGLNKSVAAKVGLPTGTPVVVGAGDGPLG
                     NLGTGALDPGVVGLSLGTSGAARMVVPGPVADQSGRLFCYALTDDAWVVGGAVSNGGI
                     AIRWAGGIFGHDGGSDAELLELAASVPAGSDGLLMFPYLLAERAPLWDPTLTGAFLGL
                     RHSHTRGHFVRAVVEGVALQLWAIVDQLDTVVPVTQVRATGGVFRSKVWREALAGVLG
                     HPVTVTGGAEGSALGAAALGLTAVGRAHTLAEGLEVLSPGLSGGGEPVAVRPSDDAVY
                     RGLRAGFPRLLDAYAALNTVLTSQGARATVQS"
     gene            1272..>1522
                     /gene="larC"
                     /locus_tag="VGN19_13565"
     CDS             1272..>1522
                     /gene="larC"
                     /locus_tag="VGN19_13565"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010533230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel insertion protein"
                     /protein_id="HEV7196957.1"
                     /translation="MTSEPSSAAAAGRLSAWIDASAGIAGDMLLGALVDAGADLDAVQ
                     SVVDAVLPSTVRLSATHVMRAGQCACKVDVAVLMADQPHR"
BASE COUNT          203 a          521 c          559 g          239 t
ORIGIN      
        1 ctgatcgggc tcgacgagag tcttcgcccc ctgacaccgt tgctcacctg ggccgactcg
       61 cgggccgcgc aggaggctgc ggaactgcgg gcctccagtg aggcgatggc cctgcaccgg
      121 acgtcaggga cgccggtgca tccgatgagc cccctgacca agctgctgtg gttcgaccgg
      181 cacgaacccg aactgggtgc gaaggcgcgt gcctgggtgg ggctgaagga ctatgtgctg
      241 cacgcactga ctggcacgtt ggcgaccgag ctgtcgtcag cgtcagggac ggggatgctc
      301 gacgtgtcga cccggacctg gaacccgcgt gcgctggaga ttgcgggagt gcgggaggac
      361 cagctgccgc cagtgctgtc cacctcggcc gttctcgggc tcaacaagtc ggtcgcggca
      421 aaggtcggcc tccccacggg caccccggtc gttgtgggcg ccggcgacgg tcccctcggc
      481 aacctgggga cgggtgcgct ggaccccggc gtggtagggc tgtcgctcgg caccagcggc
      541 gcagcccgga tggttgtgcc agggcccgtg gcggaccagt ccgggaggct gttctgctac
      601 gccctgaccg atgacgcgtg ggtggtcggc ggggccgtga gcaacggtgg catcgccatc
      661 cggtgggcag gaggcatctt cggccacgat ggcggcagcg acgccgagct gctcgagctc
      721 gccgcctcgg tcccagcagg cagcgacggc ctgctcatgt ttccctacct gctcgcagaa
      781 cgggcgcccc tgtgggaccc cacgctgacc ggtgccttcc tgggtctgcg gcactcccat
      841 acgagggggc acttcgtccg agcagtcgtc gagggtgtgg cgcttcagct ctgggcgatc
      901 gtcgaccagc tggacacggt cgttcccgtc acccaggtgc gggcgaccgg cggcgtgttc
      961 cgctccaagg tctggcggga ggcgctggct ggagtgctcg gccaccccgt caccgtgacc
     1021 ggcggagccg aggggtcggc cctaggcgcc gcggcgctgg ggttgaccgc agtggggcgt
     1081 gcgcacaccc tcgccgaggg cctcgaggtc ctctcgccgg ggctgagcgg tggcggcgaa
     1141 cctgtcgcgg tgcgcccgtc agacgatgct gtctaccgcg ggctgcgcgc cggatttccc
     1201 cgactcctcg acgcctatgc cgcgctcaac accgtcctga ccagtcaagg ggcacgggct
     1261 acggtgcagt catgacctcc gagccatcca gcgcggcggc agccgggcgc ctcagcgcgt
     1321 ggatcgacgc cagtgccgga atcgccggag acatgctgct gggagccctc gtcgacgccg
     1381 gagctgacct cgacgccgtg cagtcggtcg tcgacgccgt tctgccgtca acggttcggc
     1441 tctctgccac gcacgtgatg cgcgcgggcc aatgcgcctg caaggtcgac gtcgcggtgc
     1501 tcatggccga ccagccgcat cg
//
LOCUS       DASYFY010000668         9867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_627042, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000668 DASYFY010000000
VERSION     DASYFY010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9867
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_627042"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1051)
                     /locus_tag="VGN19_13570"
     CDS             complement(<1..1051)
                     /locus_tag="VGN19_13570"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7196958.1"
                     /translation="MAIAPLIEAPRLAALDGVRQIHRVLDQLAVDRPLSGPTTAAALG
                     QVERAIARLQSVRLALVAAADRTNLAAESGMTGTGAWLSAQTRSAGAVAAADVRLATA
                     LEDGLPVTREALAAGDVSTQHASVIAATADRLPADLSASERRAIEATLVAQARRVDPG
                     ALRKAARRALSAAERSRAEVDAHEDAALRSEEDRAWDRARLSLHDNRDGTTSGHFTVP
                     TMAAAILRKTVQQLASPRRFADRAAARGATTASAQLEAFRKVDWSQRYGQAFVELLEH
                     LPTDRLSGKVAATVVVTVAHDQLKNQLGAAHLDTGDDLSASQARRLACNAGVLPAVMG
                     GASLPLDLGRTNRFFT"
     regulatory      1213..1299
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1473..2459
                     /gene="cobA"
                     /locus_tag="VGN19_13575"
     CDS             1473..2459
                     /gene="cobA"
                     /locus_tag="VGN19_13575"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEV7196959.1"
                     /translation="MRITVPGTSPTVLVRQPGPRIAETVHGLLDQGAIVTILTSDPSP
                     TVLDLVARRLVAVASDGDPAAYDLVVRDPLSDNDIRTSTAQRGNVVLVGAGPGDPGLL
                     TVAGLEALRGADVVVTDRLVPLGALDEAPEHAEIVHVGKIPRGEFTSQEAINHLLVSH
                     ALAGKHVVRFKGGDSFVFGRGGEEWAACVEAGVPVQVIPGVSSAVAAPALAGIPLTHR
                     SLTQGFVVVTGHVPPGDPRGTVDWEWLGGSDLTLVILMGVAALPEIAAALVRGGLDPA
                     TPAACIADGGMPSMLTVTATITTLAAAADQAGIRPPAVTVIGDVVTALKENP"
     gene            2456..3571
                     /gene="cobT"
                     /locus_tag="VGN19_13580"
     CDS             2456..3571
                     /gene="cobT"
                     /locus_tag="VGN19_13580"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008939 -
                     nicotinate-nucleotide-dimethylbenzimidazole
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HEV7196960.1"
                     /translation="MTLLPPRADVRAEALARFDALAKPLGSLGRLEELGAWIGACQGS
                     CPPRKLERVTAIVPAGDHGVVASGVAAYPKEITAAMVRTLVAGVAGMSVLAAQHGVPV
                     RVLDIAVDDDLEGVPAEVTAYKIRRSSQPIDTQDAITLDELDEALAKGSAIVAEEEAA
                     GTQLLVMGDLGIGNTSPAAALIASTLGLRADQVTGRGAGLDDEGLARKTAVIQQALDR
                     TAHITDPRARLAALGSADLAFAVGVMVAAARAGIPVLLDGVISVAEALVADSLEPGAR
                     AWFAAGHRSPEPAQALALEALGLVPIIDLGMRLGEGSGAMTALPVLRSAVIALHDMAL
                     LADLMPPETAPDAAPNSAPDAAPNSAPEAAAEPAPAP"
     gene            3579..4358
                     /locus_tag="VGN19_13585"
     CDS             3579..4358
                     /locus_tag="VGN19_13585"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEV7196961.1"
                     /translation="MRAALSGLRLAVGTLTMVPVGDLEPPSRRSAAWAMTLAPVAVLP
                     LAAAAGAIGWLGGLARLPALVVAALVLMALGLGSRAMHLDGLADTVDGIGAGWSRQRA
                     LDVMRRGDVGPMGVAAVVLVLLVEAGAAAAILERPGGWLLVALAVVVSRASCALTCAR
                     GIPAARREGMGALVAGTVPLPALAFVLVASATALGEATQDMHAGSGAAAVAVLVMTLV
                     VALLIRLATRVFGGVSGDVMGAAIEISLAALLVTLSSGLGR"
     gene            4355..4885
                     /gene="cobU"
                     /locus_tag="VGN19_13590"
     CDS             4355..4885
                     /gene="cobU"
                     /locus_tag="VGN19_13590"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007929457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0043752 - adenosylcobinamide kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HEV7196962.1"
                     /translation="MKTLVTGGVRSGKSMVAEHLLAGADEVSYLATGPCSDDADWAER
                     VAAHRNRRPAHWSTVETSDLATALAQLTGPALVDCLGTWLTATLDDLQVWEAPQPTWE
                     AALSLRLQAVVDAWTTCPHGLVAVTNEVGWGVVPEHRSGRIFADWLGRLNQQVAAASD
                     RVLLVVSGQVLVVKQP"
     gene            complement(4958..5845)
                     /locus_tag="VGN19_13595"
     CDS             complement(4958..5845)
                     /locus_tag="VGN19_13595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HEV7196963.1"
                     /translation="MGAQAAYRPRRSVLYMPSSNERALEKAKTLSVDALILDLEDAVA
                     PDAKDVARENACAAARSGEYGQREITIRVNGIGTRWHDEDLRAASAAGPDAIVVPKVG
                     SAEDVRQLVAAMQAAGAPEHTKLWAMVETPTAMLHCEEIAAASDRLTVLVMGTNDLAK
                     ELHAEHVPGRQPLLTGLSLCLLAARATGTVILDGVYNDVKDAEGFEAECLQGRQLGFD
                     GKTLIHPGQVEACNAAFAPSAAAVEDARAVLAAWQAGGGAGVVTHQGRMIENLHVETA
                     ERVLAVHEAISALASSAGE"
     gene            complement(5845..6936)
                     /locus_tag="VGN19_13600"
     CDS             complement(5845..6936)
                     /locus_tag="VGN19_13600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HEV7196964.1"
                     /translation="MRSPKDFFAPLAVGAPAPVREVPARPSRVIHFFDPSNEKMAAKI
                     PAMVGTVDVLLGNLEDAVKADRKEAARAGLVQIARSTDFGEHTQLWTRVNALDSPWVL
                     DDLTTLVAEVGDKLDVVMVPKVQGPEDIHYVDRLLAQLEARAGLKRPILVHAILETAR
                     GVANVEEIAGASPRMQGMSLGPADLAADRRMKTTRVGGGHPGYLVRQDPVDGDVNAER
                     QTYQQDLWHYTIARMVDACAMHGIFPYYGPFGDIADVVACEDQFRNAFLLGCVGTWSL
                     HPVQIEIAKRVFSPSAEDVAHARRVIEAMGDGTGAVMLDGKMEDDASLKQCLVIVELA
                     DRLAATDPDLAAVYAASPSSPASREGAQR"
     gene            6989..7546
                     /locus_tag="VGN19_13605"
     CDS             6989..7546
                     /locus_tag="VGN19_13605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196965.1"
                     /translation="MTEAANQAAPPQAAPLNITALFAEAASKSALMWVDIPGDRAWPF
                     WHAWDGETVYAVSGPGEQTLPWVPDQVCLVTRSKDSGGRLLSVHATVREIRPEDPEWE
                     AATQALKTERLNATDDQLTRWAEDCTVRAFKPFGAPVEGPGSYVSTSRSAPVPPSPAT
                     TSGWRPWHWRGRPRRRRGNRLPDEH"
     gene            7568..8839
                     /locus_tag="VGN19_13610"
     CDS             7568..8839
                     /locus_tag="VGN19_13610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009482292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEV7196966.1"
                     /translation="MSTPSRVFVGRLTNLSVFDPLGDQVGRVRDVVVTFGASRRRPRV
                     IGLVVEVPGRRRVFVPMTRVTSVDGGQVITTGLVNMRRFEQRTNEELVMAELLERTVT
                     VNDPEGAFEATVEDVAIERERNRDWVISKVFVRQGSGRTLGPFRRRRGVTLVVPVEEV
                     SGLHHSGSNQSAAKLLETYVDLKSADLAEVIHDLSPKRRAEVAEAMADERLADVLEEL
                     PEDDQVEILETLPVERAADVLEAMEPDDATDLLHNLTEEKQEELLQLMEPDEAADLRR
                     LLKYDEESAGGMMTTEPVILGPEATIAEALAVVRRAEISPALASTVYVCRSPHETPTG
                     KFLGIVHIQRLLREPPHGSIGSILDREIEPLGPDAPLGKVSRILATYNLVGVPVVDDD
                     GRLIGAVTVDDVLDHILPEDWREERREVTHG"
     gene            8832..9404
                     /locus_tag="VGN19_13615"
     CDS             8832..9404
                     /locus_tag="VGN19_13615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006947422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEV7196967.1"
                     /translation="MAERTTTRGSTVRLDQPRETKRPLLPRVSLSQETFGVWSEDFAR
                     FMGTANFLIAMTVFVAVWVGWNIFASASLAFDVYPFIFLTLMLSLQASYAAPLILLAQ
                     NRQADRDRVILEQDRARDERNLADTEYLTREVAALRHAMGDAVTRDFLRSELRSLLDE
                     IEERGLTSRRRDEDDSPRESGGSSPEYQAT"
     gene            9414..>9867
                     /locus_tag="VGN19_13620"
     CDS             9414..>9867
                     /locus_tag="VGN19_13620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEV7196968.1"
                     /translation="MPQTAAPVTDEALQKALSTVIDPEIRKPVTELGMVESVSVDEAG
                     RVEVTILLTVSGCPMKETLTKDTTSALAAVPGVTGVKVTLGVMSAEQRAGLREQLRGG
                     TPEREIPFAQPGSLTRVYAVASGKGGVGKSSVTVNLAAALAQSGLRVGV"
BASE COUNT         1406 a         3563 c         3413 g         1485 t
ORIGIN      
        1 cggtgaagaa ccggttggtg cgccccaggt ccagcggcag agacgcgccg cccatcacgg
       61 ccgggagaac gcccgcatta caggcgagtc gccgggcttg ggaggcggag aggtcgtccc
      121 cggtatcgag atgcgcagcg ccgagctggt tcttgagctg gtcgtgcgcc accgtgacga
      181 cgacggtcgc agccaccttg ccggacagcc ggtcggtggg caggtgttcg agcagctcga
      241 cgaaggcctg tccgtagcgc tgcgaccagt ccaccttgcg gaaggcctcg agctgggcgg
      301 aggcggtggt ggcgccgcgg gcggcggccc ggtcggcgaa ccggcgaggc gaggccagct
      361 gctgaacggt cttgcgcagg atcgccgcag ccatggtcgg gacggtgaag tgaccgctgg
      421 tggtgccgtc gcggttgtcg tgcaggctga gccgcgccct gtcccaggcg cggtcctcct
      481 ccgatcgcag cgcggcgtcc tcgtgggcgt cgacctccgc gcgggacctc tcggcggcgc
      541 tcagggccct tctggctgcc ttgcgtagcg cgccgggatc cacacgtctc gcctgagcga
      601 ccagcgtggc ttcgatcgcc ctgcgctcgc tcgcgctcag gtcggccggg agccggtcgg
      661 ccgtcgccgc gatgacactg gcgtgctggg tggacacgtc gccagccgcc agcgcctccc
      721 gggtgactgg gagcccatcc tccagtgccg tcgccagccg aacgtcggcg gctgcgacag
      781 caccggctga gcgcgtctgg gcggacagcc aggcgccggt gccggtcatc cctgactcgg
      841 ccgccaggtt ggtgcggtca gcagccgcca ccaaggccag tcgcacggac tgaagacggg
      901 cgatcgcccg ctcgacctgc ccgagcgctg cggcggtggt aggaccggac agcggccggt
      961 ccaccgcgag ctggtccaac acgcggtgga tctgtcgcac cccgtcgagt gccgccaagc
     1021 gcggtgcctc gatgagtggt gcgatagcca tgtgtacatc ctattcgtac gtatgttcga
     1081 atgtcgacct gcgatgcatc acgatgaatg acatttgctt gtatcagcgg tggaagacca
     1141 tcgttccccg tcgtgagacg accgtcgaga tcgacgggac cggcgtgcca tgatggctcg
     1201 ggccacgtgc gaggaatacc ggtgaaagtc cggagcggtc ccgccactgt gatccacgag
     1261 tcgacgacgt cggcagcgca cgtcgtggaa agccaggacg tcggacgcgg cccgccgata
     1321 ccggagtccc cggtgcggcc ctcgacgagc ggtgggcgcg gaacccatca ggaggatgcc
     1381 tcgtgctgac ctaccgaatc acggccgtgg ccgatgcatg aggcgtcatc acctggatgg
     1441 acacctgagg atcgccacct gaggatgacc gcatgaggat caccgtcccc ggcacctccc
     1501 ccaccgtcct cgtgcgccag ccggggccgc ggatcgccga gaccgtccac gggttgctgg
     1561 accagggtgc catcgtcacc attctgacct ccgaccccag ccccaccgtc ctcgacctcg
     1621 tcgcgcgtcg actggtcgcg gtcgcgagcg acggcgaccc cgccgcatac gacctcgtcg
     1681 tgcgagatcc actgtccgac aatgacattc gcacgtcgac tgcccaacgt gggaatgtcg
     1741 tcctcgtggg cgctgggccg ggggaccctg gacttctcac ggtcgcgggg ctcgaggcgc
     1801 tacgcggcgc ggacgtggtc gtgaccgacc ggctcgtacc gcttggtgcg ctcgacgagg
     1861 cgcccgagca tgccgagatc gtccacgtcg gcaagatccc gcggggggag ttcacctcgc
     1921 aggaggccat caaccacctg ctggtcagcc atgccctcgc gggcaagcac gtcgtgcgct
     1981 tcaagggagg cgacagcttc gtcttcggcc gcgggggcga ggagtgggct gcgtgtgtcg
     2041 aggcgggggt tccggtccag gtcattccag gcgtctcgtc agcggtggcg gctcccgcac
     2101 tggccggcat ccccctgacc catcggtcgc tgacccaggg cttcgttgtc gtgaccggcc
     2161 acgtcccgcc aggagaccca cgaggcaccg tggactggga gtggctgggc ggctcggacc
     2221 tgacgctcgt catcctgatg ggcgtggccg cgctcccgga gatcgcggct gccctggttc
     2281 gtggcggcct cgatcccgcg acccccgccg cctgcatcgc tgacgggggc atgcccagca
     2341 tgctcaccgt caccgcgacc atcaccaccc tcgccgccgc cgccgatcag gccggtatcc
     2401 gccccccagc cgtcaccgtc atcggggacg tcgtcaccgc tctcaaggag aacccatgac
     2461 cctgttgcca ccccgcgccg acgtccgggc cgaggccctc gcccggttcg acgctctcgc
     2521 caagccgctg ggctcgcttg gccggctgga ggagctcggc gcctggatcg gcgcctgtca
     2581 gggcagctgc cctccgcgca agctcgagcg ggtcaccgcg atcgtgccgg ccggtgacca
     2641 cggcgtcgtc gcctcaggcg tagcggcgta ccccaaggag atcaccgcgg cgatggtgcg
     2701 caccctggtc gccggggtgg ccgggatgag cgttctcgcg gcccagcacg gcgtgcccgt
     2761 ccgcgtcctc gacatcgccg tcgacgacga cctcgaaggg gttcctgcgg aagtcacggc
     2821 atacaagatc cgtcgctcct cccagcccat cgacacccag gacgccatca cgctcgacga
     2881 gctcgacgag gcgctggcca agggttccgc catcgtcgcg gaggaggagg ccgccggcac
     2941 ccagctgctg gtcatgggcg acctcggcat cggcaacacc tcccccgcgg ctgccctgat
     3001 cgccagcacg ctcggactgc gcgccgacca ggtcaccggc cgcggcgccg ggctcgatga
     3061 cgagggcctg gcccgcaaga ccgccgtgat ccagcaggcg ctggaccgta ccgcccacat
     3121 caccgacccc cgcgcgcgtc tggcagccct cggctcggcg gatctcgctt tcgctgtcgg
     3181 ggtcatggtc gcggcggcac gcgctggcat ccccgtgctg ctggacggcg tcatctcggt
     3241 ggcggaggcg ctggtcgccg actccctcga gccgggcgcg cgggcctggt tcgccgcggg
     3301 ccaccgctcg cccgagccgg cccaggcgct ggccttggag gccctcggcc tggtgccgat
     3361 catcgacctc ggaatgcggc tcggcgaagg gtccggggcc atgaccgccc tacctgttct
     3421 gcgatcggcc gtcatcgcgt tgcacgacat ggcgctgctg gccgacctga tgccgccaga
     3481 gacggcgcca gacgccgcac caaactcggc gccagacgcc gcaccaaact cggcgccaga
     3541 ggccgcggca gagccggcgc ccgccccgtg accgcctcat gagggccgcc ctgtccggac
     3601 tccgtctcgc cgtcggcacc ctgacgatgg tcccggtagg agacctggag cccccctccc
     3661 gcaggtcggc ggcctgggcc atgacgctcg cgccggtggc ggtgctcccg ctggccgccg
     3721 ctgccggtgc gatcgggtgg ctcggtgggt tggcccgcct tccggcactc gtggtcgccg
     3781 cactggtcct gatggcgctg ggcctgggct cacgtgccat gcacctggac gggctggccg
     3841 acacggtcga cgggataggc gccgggtgga gcagacagcg tgccctcgac gtcatgagac
     3901 gcggggacgt cgggccgatg ggcgtggcgg ccgtcgtcct cgttctcctg gtcgaggccg
     3961 gcgccgccgc agcgatcctc gagcgccccg ggggctggct gctcgtcgcc ctggcggtcg
     4021 tcgtttcccg cgccagctgt gccctgacct gtgcgcgcgg tatccccgcc gcgcgccggg
     4081 aggggatggg ggcgctggtc gccggcacgg tcccgctgcc tgccctggcg ttcgtgttgg
     4141 tggcgagcgc gacggcgctg ggagaggcca ctcaggacat gcacgccggg tcgggggccg
     4201 ccgcggtggc ggtcctggtc atgacccttg tcgtcgccct gttgatccgc ctcgcgacgc
     4261 gggtgttcgg cggagtcagc ggggacgtca tgggagccgc gatcgagatc tcgcttgcag
     4321 cgctgctcgt caccctgtcc tcggggctgg gccgatgaag accctcgtca ccggaggcgt
     4381 ccgctcgggc aagtccatgg tcgccgagca cctgctcgcc ggcgcggatg aggtcagcta
     4441 cctcgccacg ggcccctgca gcgacgacgc cgactgggcg gaacgcgttg ccgcacaccg
     4501 caaccggcgc cccgctcact ggagcacggt ggagacttcc gacctcgcga cggccctggc
     4561 gcagctcacc gggccagccc tcgtcgactg cttgggaacc tggctgacgg caacactcga
     4621 cgacctgcag gtctgggagg cgccgcagcc cacctgggag gccgcgctgt cgctcaggct
     4681 gcaggcagtg gtggacgcct ggaccacctg cccgcacggc ctcgtggccg tcacgaacga
     4741 ggtgggctgg ggcgtcgtgc ccgagcaccg ctcgggacga atctttgccg actggctggg
     4801 ccggctgaac cagcaggtcg cggcggcgtc cgaccgcgta ctcctcgtcg tgagcggtca
     4861 ggtgctggtg gtcaagcagc cgtgagcagc ggaccttgac ccggcggggc ggcggcgcgg
     4921 ccgctcgccg ggttgttcgt cgggctatcc gcctgcgcta ttcgccggcg ctgctcgcca
     4981 gggcgctgat cgcctcgtgt accgccaaca cacgctcagc ggtctcgaca tgcaggttct
     5041 cgatcatccg cccctgatgg gtcaccacgc ccgcgccgcc accggcttgc caggcggcca
     5101 acaccgcgcg cgcatcctcg acggcggccg cgctgggagc aaaggccgcg ttgcatgcct
     5161 cgacctggcc cgggtggatc agggtcttgc cgtcgaagcc gagctgccga ccttgtagac
     5221 actccgcctc gaagccctcg gcatccttca cgtcgttgta gaccccgtcg aggatgaccg
     5281 tcccggtcgc gcgcgccgcc agcagacaca acgaaaggcc ggtcaacagg ggttgacggc
     5341 cggggacgtg ctcggcgtga agctccttgg cgagatcgtt cgtccccatc accagcaccg
     5401 tgaggcggtc ggacgcggcc gcgatctcct cgcagtgcag catggccgtc ggcgtctcca
     5461 ccatcgccca gagcttcgtg tgctcgggcg cccccgcggc ctgcatcgcc gcgacgagct
     5521 ggcgcacgtc ctcggccgat ccgaccttcg gcaccacgat cgcgtccggc ccggcggcgc
     5581 tcgccgctcg caggtcctcg tcgtgccagc gggtcccgat gccgttcacc cggatcgtga
     5641 tctcgcgctg cccgtactcc cccgaccgcg ctgccgcgca ggcgttctca cgggcgacgt
     5701 ccttggcatc cggggccacc gcgtcctcga ggtcgaggat cagggcgtcg acggagaggg
     5761 tcttcgcctt ctccagagcg cgttcgttgg agctcggcat gtacagcacc gaacgccggg
     5821 gccggtatgc cgcctgcgcg cccatcagcg ctgcgcacct tcacgagatg cgggcgacga
     5881 gggcgacgcg gcatacaccg cggccaggtc ggggtcggtc gccgccaggc ggtcggcgag
     5941 ctcgacgatc accaggcact gcttgagact ggcgtcgtcc tccatcttgc cgtccagcat
     6001 caccgcgccg gtgccgtcac ccatcgcctc gatgacgcgc cgagcgtgcg cgacgtcctc
     6061 ggcggagggg ctgaacacgc gcttggcgat ctcgatctgg accgggtgca gcgaccacgt
     6121 cccgacgcac ccgagcagga aggcgttgcg gaactggtcc tcgcacgcca cgacgtcggc
     6181 gatgtcaccg aacggcccgt agtacgggaa gatcccgtgc atcgcacagg catcgaccat
     6241 gcgggcgatc gtgtagtgcc acagatcctg ttggtacgtc tggcgttccg cgttgacgtc
     6301 gccgtccacc gggtcctgcc gcacgagata ccccgggtgc ccgccaccca cgcgggtggt
     6361 cttcatccgc cggtcggcgg ccaggtccgc cggaccgagc gacatcccct gcatccgcgg
     6421 gctggcgccg gcgatctcct cgacgttggc cacgcctcgg gccgtctcga ggatggcgtg
     6481 cacgaggatg ggacgtttca agccggcccg agcctcgagc tgggcgagca gccggtcgac
     6541 gtagtggatg tcctcggggc cttgcacctt gggaaccatg acgacgtcga gcttgtcgcc
     6601 gacctcggcg accagggtcg tgaggtcgtc cagcacccac gggctgtcca gcgcgttgac
     6661 gcgggtccag agctgggtgt gttcgccgaa gtccgtcgag cgggcgatct gcacgaggcc
     6721 ggctcgggcc gcctccttgc gatcagcctt cacggcgtcc tcgaggttgc ccagcagcac
     6781 gtcgacggtg ccgaccatgg ccgggatctt ggcggccatc ttctcgttgc tggggtcgaa
     6841 gaaatggatc acgcgggaag gcctcgcggg cacctcacgc acgggcgccg gagcgccgac
     6901 ggccaacggg gcaaagaagt ccttagggct gcgcacgccg cgaaactagc agcgacgcct
     6961 cgtcaacggt tatgacacag ttcacggtgt gaccgaagcc gcgaaccagg ccgcgccgcc
     7021 tcaggccgcg ccactgaaca tcacggccct gttcgccgag gcggcgtcca agtcggcctt
     7081 gatgtgggtg gacattccag gcgaccgggc gtggcccttc tggcacgcgt gggacgggga
     7141 gaccgtgtat gccgtgtccg gccccggcga gcagacgctg ccctgggttc ccgaccaggt
     7201 ctgcctggtc acccgcagca aggactccgg cggccgactg ctcagcgtgc acgccaccgt
     7261 ccgcgagatc cggcccgagg accccgagtg ggaggcggcg acccaggcgt tgaagaccga
     7321 gcgcctcaac gccaccgacg accagctgac ccgctgggcc gaagactgca cggttcgcgc
     7381 attcaagccc ttcggggcac cggtcgaagg gcccggctcg tatgtgtcca cctcgcggtc
     7441 ggcccctgtt ccgccgagcc cagccaccac ctccggctgg cgaccatggc actggcgcgg
     7501 tcgtccgcgg cgtcggcgtg ggaaccgcct cccagacgag cactgaccag ccggatagcc
     7561 ttacggggtg agcactccgt cgcgcgtctt tgtgggccgc ttgaccaacc tgagcgtgtt
     7621 cgatccgctc ggtgaccagg tcggccgcgt tcgcgacgtc gtcgtcacgt tcggtgcctc
     7681 gcgccgccgc ccacgagtca tcggactcgt cgtggaggtt cccggccgac gtcgcgtctt
     7741 cgtcccgatg acccgggtga cctccgtcga tggcggtcag gtcatcacga ctggcctggt
     7801 gaacatgcgc cgcttcgagc agcgcaccaa cgaagagctg gtcatggccg agctcctcga
     7861 gcggacggtg acggtcaacg accccgaggg ggccttcgag gcgaccgtgg aggacgtcgc
     7921 catcgagcgc gagcgcaacc gcgactgggt gatctccaag gtcttcgtcc gccaaggctc
     7981 cggtcgcacg ctcgggccgt tccgccgacg ccgcggcgtg accctcgtcg ttccggtcga
     8041 ggaggtctct gggctccacc actcagggtc gaaccagtcg gcggccaagc tgctcgaaac
     8101 ctacgtcgac ctgaagtcgg ccgacctggc cgaggtgatc cacgacctgt cccccaagcg
     8161 ccgcgccgag gtcgccgagg ccatggccga cgagcggctc gccgatgtgc tcgaggagct
     8221 gcccgaggac gaccaggtcg agatcctcga gacgctgccc gtcgaacgcg ccgctgacgt
     8281 cctggaggcg atggagcccg acgacgccac cgacctgctg cacaacctca cggaggagaa
     8341 gcaggaggag ctgctccagc tcatggagcc cgacgaggcc gccgacctga gacgactcct
     8401 gaagtacgac gaggagtccg ccggcggcat gatgacgacc gagccggtca tcctgggccc
     8461 ggaggcgacg atcgcggagg cgctggcggt cgttcgtcga gccgaaatct cccccgcgct
     8521 cgcgtcgacc gtctatgtgt gccgctcccc gcacgagact ccgaccggca agttcctcgg
     8581 catcgtccac atccagcggt tgctgcgcga gccaccgcac ggctccatcg gcagcatcct
     8641 cgaccgcgag atcgagccgc ttggccccga cgccccgctg ggcaaggtca gccgcatcct
     8701 cgccacctac aacctggtgg gcgtgccggt cgtcgacgac gacggtcggc tcatcggcgc
     8761 cgtcacggtc gacgacgtcc tggaccacat ccttcccgag gactggcgtg aagagcgacg
     8821 cgaggtgacc catggctgag cggaccacga cccgaggcag cacggtccgc ctcgaccaac
     8881 cgcgcgagac caagcgcccg ctgctgccac gcgtcagcct ctcccaggag acgttcggcg
     8941 tctggagcga agacttcgcg cgcttcatgg ggaccgcgaa cttcctgatc gccatgaccg
     9001 tcttcgtggc ggtctgggtc ggctggaaca tcttcgcctc ggccagcctc gccttcgacg
     9061 tctacccgtt catcttcctg acgctgatgc tgagcctgca ggcctcgtac gccgcaccgc
     9121 tgatcctgct ggcccagaac cgtcaggccg accgggaccg ggtcatcctc gagcaggacc
     9181 gcgcccgcga cgagcgcaac cttgccgaca ccgagtacct cacccgcgag gtggccgccc
     9241 tgcgccacgc gatgggcgac gccgtgacgc gcgacttcct gcgctccgag ctgcgcagcc
     9301 tgctcgacga gatcgaggag cgcgggctga cctcccgtcg ccgtgacgag gacgacagtc
     9361 cccgggagtc gggcggttcc tcgccggagt accaggcgac ctagcatggg gccatgcccc
     9421 agaccgcagc cccggtaacc gacgaggcgc tccagaaggc cctgtccacc gtcatcgacc
     9481 ccgagatccg caagcctgtc accgagctcg gcatggtcga gagcgtcagc gtggacgagg
     9541 ccggtcgggt cgaggtgacg atcttgctca ccgtctcggg ctgcccgatg aaggaaaccc
     9601 tgaccaagga cacgacgtcc gccctggccg ccgtcccggg agtgaccggc gtcaaggtca
     9661 ccctcggggt catgagcgcc gagcagcgcg ccggtctgcg cgagcagctg cgtggcggga
     9721 cgcctgagcg cgagatcccc ttcgcccagc ccggatccct gacccgcgtg tacgccgtcg
     9781 cctccggcaa gggtggcgtc ggcaagtcgt cggtgacggt caacctggcc gccgcgctcg
     9841 cccagagcgg gctgcgagtg ggggtcg
//
LOCUS       DASYFY010000669         3146 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1730458, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000669 DASYFY010000000
VERSION     DASYFY010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1730458"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /gene="rpsB"
                     /locus_tag="VGN19_13625"
     CDS             complement(<1..207)
                     /gene="rpsB"
                     /locus_tag="VGN19_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEV7196969.1"
                     /translation="MAVVTMRQLLESGVHFGHQTRRWNPKMKRFIMTERNGIYIIDLQ
                     QSLTYINNAFEFVKETVAHGGSILF"
     gene            492..1727
                     /locus_tag="VGN19_13630"
     CDS             492..1727
                     /locus_tag="VGN19_13630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013839636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEV7196970.1"
                     /translation="MSKVLDAVAPPRMGVSFRWLLASSWVSNVGDGIALAAGPLLVAS
                     QTHNPVLVGLAALLQRVPWLVFGLWAGALADRLDRRRVVIIADLLRTAVIAVLCVAIL
                     SHQVSIALVLIAMALYGTAEVFADSSTGTLLPMLIDRADLGVGNARLQAGFLTANQLV
                     GPPVGAFLFAAGMVWPFVVQVVCAALGVVLIARIATQRGGVRDHTTTHVRADIVEGLR
                     WIRSNAPVRTLAVVILVFNVTWGAGWSILVLYSLDHLHLGDVGFGLLTTAAALGGLAG
                     TGGYGWLERHVALATLMRACLLLEVLTHLALALTSTGWVAMAIMVVFGCYAFVWGALS
                     QTVRQRAVPTEFQGRVGSVYGVGVFLGLVVGQGLGGVIAQEWGLTAPFWFAFVGSGLT
                     LAVVWRQLGHIAHEDSLPS"
     gene            1784..2962
                     /locus_tag="VGN19_13635"
     CDS             1784..2962
                     /locus_tag="VGN19_13635"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010852020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEV7196971.1"
                     /translation="MARPPGKPSLAPFGTTIFAEMTALASAHGAVNLGQGFPDTDGPR
                     AMLDAAKAAIDGGRNQYPPGPGVPELLEAIADHQSRFYGLTFDAFSQVLVTVGATEAI
                     AATILALCEPGDEVVTFEPYYDSYAASIALAGAVRRTSVLRFPDFAVDEQSLRAAFST
                     RTRLVLLNTPHNPTGKVFTRAELDLICALAREFDAWVVTDEVYEHLVFSGASHVPVAS
                     LPGMAERTLTISSAGKTFSATGWKVGWVCGPPEAVAAIRTVKQFLTFVGSGPFQPAVA
                     VALGLDDEVYAGLARSLEGKRDLLVSGLRSAGLEVSVPQGTYFVVADAAPLGAVDSLQ
                     FCRELPGRLGVAGVPVSVFHDDPDAARTLVRFAFCKRDEVLHEAVRRLSGGSTEGSTG
                     "
BASE COUNT          429 a         1041 c         1092 g          584 t
ORIGIN      
        1 gaacaggatc gagccgccgt gcgcgacggt ctccttgacg aactcgaacg cgttgttgat
       61 gtacgtcagc gactgctgca ggtcgatgat gtagatgccg ttgcgctcgg tcatgatgaa
      121 gcgcttcatc ttggggttcc aacgtcgggt ctggtgcccg aagtggacgc cgctctcgag
      181 gagctggcgc atggtaacga cggccatgcc gtggtctccc ttgtggttgt cagtttcgtc
      241 ggtatgccgc gtgggtgcga ccacctgcct ggcgtctgct acgcccccaa ccggcctggg
      301 ccggactgcc ggggtgcgcc ccgggttcag aggattcctc gtcacccggc gagaagacgc
      361 gcgaattagg cctccgcacg cacgcgcacg tcgaccgccc ctcatcgtac ggggtccgac
      421 ggagatcgct aaatcgaggc gacgcgcgat gaggcgacgt cggatgcgga cgccactacg
      481 ctcctgcgtc ggtgagcaaa gtcctggacg cagtggcacc cccgcggatg ggggtgagct
      541 ttcgttggtt gttggcctcc tcgtgggtaa gcaacgttgg cgatggcatc gctctcgctg
      601 caggcccgct gctcgtggcc tctcagacgc acaaccccgt gctggtggga ctggcagcgt
      661 tgctgcagcg ggttccctgg ctcgtcttcg ggctgtgggc cggggcgctg gctgatcggt
      721 tggaccgacg ccgggtcgtg atcatcgcgg acctgctgcg aactgccgtt atcgcggtgc
      781 tttgcgtcgc gatcctcagc caccaggtct ccatcgccct ggtgctcatc gccatggccc
      841 tgtacgggac cgcagaggtc ttcgccgaca gcagcaccgg gaccttgctg ccgatgctca
      901 tcgaccgggc cgacttggga gtcggcaatg cgcggctcca ggcaggcttc ctcacggcca
      961 accagctggt cggcccaccc gtgggggcct tcctgttcgc agctggcatg gtctggccat
     1021 tcgtcgtgca ggtcgtctgc gcggcgctgg gggtcgtgct gatcgcccgc atcgccaccc
     1081 aacgaggcgg ggtcagggac cacacgacga cccatgtccg cgccgacatc gtcgagggtc
     1141 tgcgctggat ccggagcaac gccccagtac gtacgctggc cgtggtcatc ctcgtgttca
     1201 acgtgacgtg gggtgcaggt tggtcgatcc tcgtgctgta ctccctggac cacctccacc
     1261 tgggcgacgt cggcttcggg ctgctgacga ccgctgcggc actgggtggc ctggccggga
     1321 ccgggggcta cggctggctc gaacgccatg tcgcgctggc cacgctcatg cgggcctgcc
     1381 tgcttctgga ggtgctgacg cacctcgcgc tggcgttgac ctccacggga tgggtcgcga
     1441 tggcgatcat ggtggtcttt ggttgctacg ccttcgtgtg gggagccttg tcgcagacgg
     1501 tccggcagcg agccgtgccc acggagttcc aaggacgggt gggcagcgtt tacggcgtcg
     1561 gcgtcttcct ggggctcgtg gtcggtcagg gactgggagg agtcatcgcg caggagtggg
     1621 ggctcacagc gccattctgg ttcgcgttcg tggggtcggg cctgaccctg gcggtcgtct
     1681 ggcgacagct cggccacatc gcccatgagg actcgttgcc gtcgtgatgg cgcgggcggc
     1741 ccgagcggcc cccgcaacca agcgggcggc ataccctctg cgcatggccc gaccgcccgg
     1801 caaaccctca ctcgctccgt tcggcaccac gatcttcgcc gagatgaccg cgctcgccag
     1861 cgcgcacggg gccgtcaacc tcggtcaggg gtttccggac accgacgggc cccgagcgat
     1921 gctcgacgcc gccaaggcag ccatcgacgg aggtcgcaac cagtacccgc ccggcccggg
     1981 ggtgccggag cttctcgagg cgatcgcgga ccaccagtcg aggttctacg ggctgacctt
     2041 cgatgcgttc tcgcaggtcc tcgtcaccgt tggcgcgacc gaggccatcg cggcgacgat
     2101 cctggccctg tgcgaacccg gcgacgaagt ggtgaccttc gagccctact acgactcgta
     2161 tgccgcgtcg atcgccctgg ccggtgcggt acgtcggacc tcggtgctcc ggtttccgga
     2221 cttcgcggtc gacgagcagt cgcttcgagc ggccttctcg acgcgcacgc ggctggtctt
     2281 gctcaacact ccgcacaacc ccaccggcaa ggtcttcacc cgtgcagagc tcgacctgat
     2341 ctgcgccctg gccagggagt tcgatgcctg ggtcgtcact gacgaggtct acgaacacct
     2401 ggtgttctcc ggggccagcc acgttccggt cgcctccttg ccggggatgg ctgaacgaac
     2461 gctgaccatc tcgtcagcgg gcaagacgtt ctcggccacc gggtggaagg tggggtgggt
     2521 ctgcggtcca cctgaggcag tggccgcgat ccgaaccgtc aaacagttcc tgacctttgt
     2581 cgggtcggga ccgttccagc ccgcggttgc cgtcgcgttg gggctcgacg acgaggtgta
     2641 tgccggcctg gcccggagcc tggagggcaa gcgcgacctg ctggtgagtg gactgcgctc
     2701 ggcagggctg gaggtctccg tcccccaggg gacctacttc gtcgtcgcgg acgcggcacc
     2761 gctcggcgcc gttgactcgc tgcagttctg tcgtgagctg ccggggcggt tgggcgtcgc
     2821 cggcgtgccg gtttcggttt tccatgacga tcccgacgcg gcgcggaccc tggttcggtt
     2881 cgcgttctgc aaacgggacg aggtactgca cgaggcagtc cggcggctgt caggaggatc
     2941 caccgagggc tctaccggat agtccaccgc tggcgttgct cggtaaccgt gtccacagag
     3001 ctacccgccg tggctggaag ggtcgggacg cgccagcaac cgtggagacc atgatgcccg
     3061 tggccaccgc tcttgtatcc gccgcagccc tggtgctcgc tgtggcggcg tccgcatcga
     3121 cacccggcgc caccgcggat ggcacc
//
LOCUS       DASYFY010000670         1650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1416538, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000670 DASYFY010000000
VERSION     DASYFY010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416538"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..798)
                     /locus_tag="VGN19_13640"
     CDS             complement(<1..798)
                     /locus_tag="VGN19_13640"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020145403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HEV7196972.1"
                     /translation="MDRQQEFVLRTIEERDIRFVRLWFTDVLGTLKSVAVAPAELEGA
                     FSEGIGFDGSAIEGFARVFEADMLAKPDPATFQVLPWRGDNPGTARMFCDITLPDGSP
                     SHADPRHVLQRALGKASDLGFTFYTHPEIEFYLLKQGFTAGEIPEPIDHAGYFDHVPH
                     GTGHDFRRAAITMLESMGISVEFSHHEGGPGQNEIDLRYADALTTADNIMTFRLVMKQ
                     VALEQDVYASFMPKPFTEFPGSGMHTHLSLFEGDRNAFFEAGAQYQLS"
     gene            complement(889..>1650)
                     /locus_tag="VGN19_13645"
     CDS             complement(889..>1650)
                     /locus_tag="VGN19_13645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7196973.1"
                     /translation="SGARTFRGRTIHAACAPAVLNDLLRVAGAEPIATEASPEGAQLK
                     INMVLSRLPRLLDSGADPRAAFAGTFHVNEGYDQLQRAFAQAAAGHVPDVPPCEIYCH
                     SLSDRSILGPELAASQAQTLTLFGLHLPARLFDGSPSQQAQVKDLALARTLASLNSVL
                     AEPIQDVLLRDADGAYCLEARTPVELEADLGLPGGNIFHRSLQWPWAESPGETGTWGV
                     ETRHENVLVAGAGARRGGGVSGIPGHNAAKAALAR"
BASE COUNT          257 a          524 c          605 g          264 t
ORIGIN      
        1 cgacagctgg tattgcgctc cggcctcgaa gaatgcgttg cggtcgccct cgaagagcga
       61 gaggtgcgtg tgcatgccgg accccgggaa ctcggtgaac ggcttgggca tgaacgaggc
      121 gtagacgtcc tgctcgagcg cgacctgctt catgaccagc cggaacgtca tgatgttgtc
      181 cgccgtggtc agcgcgtcgg cgtagcgcag gtcgatctcg ttctggcccg gccctccctc
      241 gtgatggctg aactcgaccg agatgcccat ggactcgagc atggtgatgg cggcccggcg
      301 gaagtcgtgg ccggtgccat gcggcacgtg gtcgaagtaa ccggcgtggt cgatgggctc
      361 ggggatctca ccagccgtga aaccctgctt gagcaggtag aactcgatct ccgggtgggt
      421 gtagaaggtg aacccgaggt cgcttgcctt gcccagcgcc cgctgcagga cgtggcgggg
      481 gtcggcgtgg ctcggggacc cgtcgggcag ggtgatgtca cagaacatcc gcgccgtgcc
      541 cgggttgtcg ccgcgccagg gcagcacttg gaaggtcgcc gggtccggct tcgcgagcat
      601 gtccgcctcg aagacgcggg cgaacccctc gatggccgaa ccgtcgaacc cgatgccttc
      661 ggagaaggca ccttccagct cggcgggggc caccgccacc gacttgagcg tcccgagcac
      721 gtcggtgaac cacaggcgca caaaacggat gtcgcgttcc tcgatggtgc ggaggacgaa
      781 ctcctgctga cgatccatgg gacgaatcct gccctagtcc gaacggcgcc gggtgttggg
      841 ctcaccggac cggttgcggt ttcccgttcc gggctcggct cggcaagctc agcgggcgag
      901 cgctgccttg gccgcgttgt gaccgggtat gccgctcacg cccccaccgc gacgtgcgcc
      961 ggcacccgcg acgagcacgt tctcatgtcg cgtctcgaca ccccaggtgc cggtttcgcc
     1021 cgggctttcg gcccatggcc actgcagcga gcggtggaag atgttgccgc cagggagccc
     1081 gaggtcggcc tcgagctcga cgggtgtgcg ggcctccaga cagtaggcgc catcagcgtc
     1141 gcggagcagc acgtcctgga tcggctcggc caggacggag ttcagtgagg ccagcgtccg
     1201 agccagggca aggtccttca cctgcgcctg ctgggacggt gacccgtcga acagccgggc
     1261 aggcaggtgc aggccgaaca gggtcagggt ctgggcctgc gacgcggcga gctcgggtcc
     1321 gaggatcgac cggtcagaga ggctgtggca gtagatctcg cacggcggaa cgtcgggcac
     1381 gtggccggcc gctgcctgcg caaacgcgcg ctggagctgg tcgtagccct cgttgacgtg
     1441 gaaggtccca gcgaaggccg cccgagggtc ggcgccgctg tcgagcaggc ggggaaggcg
     1501 cgacaacacc atgttgatct tgagctgggc accctcgggg gacgcttcgg tggcgatggg
     1561 ttcggcgccc gcgaccctca agaggtcgtt gagcaccgcc ggagcgcacg ctgcatggat
     1621 cgtgcgcccg cggaaggttc ttgcgccgga
//
LOCUS       DASYFY010000671         4225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_206337, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000671 DASYFY010000000
VERSION     DASYFY010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206337"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(221..1195)
                     /gene="holA"
                     /locus_tag="VGN19_13650"
     CDS             complement(221..1195)
                     /gene="holA"
                     /locus_tag="VGN19_13650"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEV7196974.1"
                     /translation="MTASPTRSVPPLVLISGPESVIAERALTSVLEELRESAPDLELI
                     RLSAATYEVGALALQASPSLFGGAKCLVVEDLDEASDELQEDLLAFLGAPDPDVTLVV
                     THKSGQRGKRVLDALKKAQARVIEAPAIKTDRDKTDFATHEFRRARRKVTPDAVRALV
                     EAVGKDVRELAAACAQLIADTTGVIDETLVTTYHGGKVEATGFRVADAAVAGQAGEAL
                     RLLRHAIATGVDPVPIVAVLAQQLRQLVKVGSAGRGRSADIARDLGMAPWQVDKARRG
                     LSGWGPEGLAESIQAVALADFEVKGGGRDPVFSVERAILTIAGARTGQ"
     gene            complement(1240..3513)
                     /locus_tag="VGN19_13655"
     CDS             complement(1240..3513)
                     /locus_tag="VGN19_13655"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEV7196975.1"
                     /translation="MATLDELLHAAVQGVGGVERPGQVEMAHAVEDAIKADEHLLVQA
                     GTGTGKSLAYLIPAVMHAQATGKPAVVATATLALQAQIVDRDMPRLAQAVAPLLKRPP
                     TYGLVKGRRNYLCAHKLEGGFPDDEEGLFGVAEVDRAASRLGEEVVRLREWASQTHSG
                     DRDELVPGVSERAWRQVSVSAHECLGGTCPMVAECFVERSRETAKECDVIVTNHSFMA
                     IDSFEGRQMLPEHDLLVVDEAHELVDRVTSTITDELTASMVSAAAKRAGRLAESSDAV
                     DDAAVFLQGVLDELPEGRLTGIPDALALALARVRDTSRQVQSELKPEKGVEPDGSRKV
                     AQAAVEEVFENSSRVLEERELDVVWVNRDPRRGSVLRVAPMSVAMLLRDKVFGDRTVV
                     MTSATLELGGTFDSVAGTLGLRGEGAPSWRGLDVGSPFDYPKQAIAYVAQHLPAPGRD
                     GLSPQTLDEIEALVRAAGGRTLGLFSSMRAAREATEAMRERFDGDLGFLCQGDDQVTT
                     LVRQFARDPQTCLFGTLTLWQGVDVPGSACQLVLIDRIPFPRPDDPLSSARAQAIARM
                     GGNGFMAVSATHAALRLAQGAGRLIRRADDRGVVAFLDSRMMTARYAGFLQRSLPPFW
                     PTTDHDRVLAALRRLDEVAPAPEAVHEPALRGVGAPVLGAAVLGAATVSIGEDAAEHP
                     RPVATDPPPAESARTAVTGGQAWTAEGDEELRDGVELGLSLEELAESLELPVEAVAAR
                     AKGLGLEVSSGAQLSFE"
     gene            3564..>4225
                     /locus_tag="VGN19_13660"
     CDS             3564..>4225
                     /locus_tag="VGN19_13660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEV7196976.1"
                     /translation="MSADPGSQPPPSLLDLLPDRTAEPDEVYAAFDGWARERGLPLYP
                     HQDEALVALLAGENVVLSTPTGSGKSLVATGAHLAAMSSDRVSFYTAPIKALVSEKFF
                     ALCEIFGASEVGMLTGDASVNPDAPIICCTAEILANIALREGASADVGLVIMDEFHFY
                     AEPDRGWAWQVPLLELPQAQFLLMSATLGDVTGISDDLSRRTGRPTALVTGTERPVPL
                     SFS"
BASE COUNT          630 a         1545 c         1427 g          623 t
ORIGIN      
        1 gtctctcttg gttggtcggt aggttgccgt tagagggcgg cagaagcctc tcgggaccag
       61 gcgtggggca cctgtggttg agggactctg ggtgatgctg catgcgcgca cgaccatgcg
      121 cgcacgcgga gggcaaatct atcagcgatg ggcccactct cccaaaacgt ggcgacaagg
      181 gccctgacga ggccctgacg aggccgtgcg aacgccgagt tcactgcccc gtccgggctc
      241 ccgcgatcgt caggatggcc cgttccacgg agaacaccgg gtcgcgcccg ccgcccttca
      301 cttcgaagtc ggcgagcgcc acggcctgga tcgactccgc gagaccctcg gggccccagc
      361 cggacagccc gcgccgcgcc ttgtccacct gccagggcgc catccccagg tctcgagcga
      421 tatcggcgga ccgaccgcga cccgccgaac ccaccttgac gagctggcgc agctgctgag
      481 cgagaacggc gacgatgggc accgggtcca ccccggtggc gatggcatgc cgcagcagcc
      541 gaagggcctc gccggcctgt ccggccaccg ccgcatccgc gacgcggaag cccgtcgcct
      601 cgaccttgcc tccgtggtac gtggtcacca gcgtctcgtc gatgaccccc gtggtgtccg
      661 cgatcagctg ggcacaggcg gcagcgagct cgcggacgtc cttgcccacg gcctcgacca
      721 gcgcccgaac cgcgtcggga gtgaccttgc ggcgcgctcg acgaaactcg tgggtggcga
      781 agtcggtctt gtcgcggtcg gtcttgatgg ccggtgcctc gatgacccgt gcctgcgcct
      841 tcttgagggc gtcgaggact cgctttcccc gctgtcccga cttgtgcgtg acaaccagcg
      901 tgacgtcggg gtcgggcgca ccgaggaagg cgagcaggtc ctcctgaagc tcgtcggacg
      961 cctcgtcgag atcctcgacg accaggcact tcgccccgcc gaacagggag ggactcgcct
     1021 gcaacgcgag cgcgccgacc tcgtaggtcg cggccgagag ccggatcagc tcgaggtcgg
     1081 gggcactctc gcgcagctcc tccagcacgg acgtcagggc acgctcggcg ataaccgact
     1141 ccgggccgct gatcagcacg agcggtggca cggaacgcgt cggcgaggca gtcacggcga
     1201 cagcctgcca cggcccaccg actgttccga gcccacgcct cactcgaagc tgagctgggc
     1261 tccggacgac acctcgagcc ccagtccctt ggcgcgggcg gccacggcct cgaccggcag
     1321 ctcgaggctc tcggccagct cctccaggct caggccgagc tccaccccgt cgcggagctc
     1381 ctcgtcaccc tccgcggtcc acgcctgtcc gccggtcacc gccgtgcggg cggactcggc
     1441 gggcggcggg tcggtggcca ccggccgcgg gtgttcggcg gcgtcctcgc cgatgctgac
     1501 cgtggccgcg cccagcacag cggcgcccag cacaggggcg ccgacgccgc gcagcgccgg
     1561 ttcgtgcacc gcctccggcg cgggcgctac ctcatcgagg cgccggagtg cggcgagcac
     1621 cctgtcgtgg tcggtggtcg gccagaacgg tggcagcgag cgctggagga acccggcata
     1681 ccgagcggtc atcattcgtg agtcgagaaa ggccaccacc ccgcggtcgt ccgcgcgtcg
     1741 aatgaggcga ccggcgccct gggccaggcg cagcgcggca tgggtggccg acaccgccat
     1801 gaacccgttg ccgcccatcc gggcaatcgc ctgagcccgc gcggacgaca aggggtcatc
     1861 gggtctgggg aacggaatgc ggtcgatgag cacgagctgg caggctgacc cgggcacatc
     1921 caccccctgc cacagcgtga gcgtcccgaa caggcaggtc tgggggtcgc gggcgaactg
     1981 gcgaaccaga gtggtgacct ggtcgtcgcc ctgacacagg aatccgaggt caccatcgaa
     2041 tcgttcgcgc atcgcctcgg tcgcctcccg ggcagctcgc atcgaggaga agaggccaag
     2101 ggtgcgcccg cccgcggccc gcacgagtgc ctcgatctcg tccagcgtct gagggcttag
     2161 cccatcgcga ccgggggcag gaagatgctg cgccacatag gcgatggcct gcttggggta
     2221 gtcgaacgga ctgcccacgt cgagtccgcg ccatgacggc gccccctccc cgcgcagccc
     2281 gagggtcccc gcgaccgagt cgaacgtgcc acccagctcg agcgtggccg acgtcatcac
     2341 gaccgtccga tcgccaaaca ccttgtcgcg caacaacatc gccacactca tgggcgcaac
     2401 cctcaagacc gaaccgcgcc gcgggtcccg gttgacccac acgacgtcga gctcgcgttc
     2461 ctccagcact cgggaggagt tctcgaacac ttcctccacc gccgcctggg ccaccttgcg
     2521 ggacccatcg ggctcgacgc ccttctcggg tttgagctcg ctctggactt gccggctggt
     2581 atcccgcacc cgggccagcg cgagcgcgag ggcatcgggg atgccggtga gcctgccttc
     2641 cggcagctcg tccaggacgc cttggaggaa cacggccgcg tcgtcgacgg cgtcgctgga
     2701 ctcggccagc cgccccgcgc gcttggccgc ggcggacacc atcgacgcgg tgagctcgtc
     2761 ggtgatcgtc gaggtcacgc ggtcgacgag ctcatgggct tcgtccacca cgaggaggtc
     2821 gtgctcgggc agcatctgac gcccctcgaa ggagtcgatc gccatgaacg agtggttcgt
     2881 cacgatgacg tcgcactcct tggcggtctc gcgcgagcgt tcgacaaagc actccgcgac
     2941 catcgggcag gtgccaccca gacactcgtg ggcgctgacc gaaacctgtc gccacgcccg
     3001 ctcgctcacc ccggggacaa gctcgtcgcg gtcaccggag tgggtctgcg acgcccattc
     3061 acgaagccgg accacctctt cccccagtcg cgacgcggcc cggtccacct cggcgacccc
     3121 gaacagcccc tcctcgtcgt ccgggaagcc accctcgagc ttgtgcgcac acaggtagtt
     3181 gcgtcggccc ttgaccagtc cgtaggtggg cgggcgtttc agcagggggg cgaccgcctg
     3241 cgcgagccgg ggcatgtcgc ggtcgacgat ctgcgcctgc agggccaggg tcgctgtcgc
     3301 cacgaccgcc ggcttgccgg tggcctgagc gtgcatcacc gccgggatga gataggccag
     3361 ggacttgccg gtaccggtgc ccgcctgcac cagcagatgc tcgtccgctt tgatcgcgtc
     3421 ctcgaccgcg tgcgccatct cgacctgacc tggtcgctcg actcccccga ccccctggac
     3481 ggcggcgtgc aggagctcgt cgagggtggc catggatcca gcgtattcgg tgcggggcac
     3541 cggccctgcg aggatgggcc gcgatgagtg ccgatccggg ttcgcagccc ccaccctcgc
     3601 tgcttgacct cctcccggac cggactgccg aacctgacga ggtgtatgcc gcgttcgacg
     3661 gttgggcccg cgagcgcggg ctgccgctgt atccgcacca ggacgaggcg ctggtggcgc
     3721 tgttggccgg tgagaacgtc gtgctctcga cgccgaccgg atcgggcaag tcgctggtcg
     3781 ccaccggcgc ccacctcgcc gcgatgagca gcgaccgggt gagcttctat accgcgccga
     3841 tcaaggccct ggtcagcgag aagttcttcg ccctgtgcga gatcttcggc gcgtccgagg
     3901 tgggcatgct gaccggcgac gcctcggtga accccgacgc gcccatcatc tgctgcaccg
     3961 cggagattct cgccaacatc gccctccgcg agggggccag cgccgacgtc ggactcgtga
     4021 tcatggatga gttccacttc tacgccgagc ccgatcgcgg ctgggcctgg caggtgccac
     4081 tcctcgagct gccgcaggcc cagttcctgc tcatgtccgc caccctcggg gacgtcaccg
     4141 ggatctccga cgacctcagc cggcgcacgg gccgtcccac agcgctggtc accggcaccg
     4201 agcgaccggt cccgctgagc ttctc
//
LOCUS       DASYFY010000672         3054 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_574464, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000672 DASYFY010000000
VERSION     DASYFY010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574464"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VGN19_13665"
     CDS             <1..551
                     /locus_tag="VGN19_13665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196977.1"
                     /translation="AVGVPLALLGQGSSDSVQSRASAAAGPSVRRPAPADHAARASGT
                     SGLSKRATATVYALGPLSSVDGLRTRVVALGSQEFSAAAPQPQSAANATAPTASGTTK
                     TSAVSGTTPVQFERCLASAVHAAGSTTTVRLLATATYKTTPALVYVFEPVPSGSATEN
                     AGRSAGVVTARQGCRVLATTRL"
     gene            complement(767..922)
                     /locus_tag="VGN19_13670"
     CDS             complement(767..922)
                     /locus_tag="VGN19_13670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196978.1"
                     /translation="MLANRAAQVKHTHVHTHVHTHVHTHIHTYVIGDLRCTVCEPWCE
                     VWGGRSS"
     gene            1169..2113
                     /locus_tag="VGN19_13675"
     CDS             1169..2113
                     /locus_tag="VGN19_13675"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196979.1"
                     /translation="MSDKPSAKRGPKPSSQPAPSQGQALGQLPGQLPGAVDAQHLVVF
                     DTTLRDGEQSPGISLDVAEKLEIAEQLARAGVDYIEAGFPVASQGDFEAVQTIARSVG
                     NAPDAPAICGLSRTQLSDVDRCWDAVRDAARARIHVFISTSPQHMEHMLKMNEAQVLA
                     ETRGGVARAREHTDDVEFSPQDATRTPLDFMLEVLRASVEAGATTLNIPDTVGYGIPW
                     DFGALIQHIRKGSPATMCSRPIATTTSGSPRPTPWPVSRPELVRSRCVSTAWVSAPGT
                     RPSRRLSWPSGSGPTNSPASPPRYAPRSWRVLRVSWLG"
     gene            2101..2832
                     /locus_tag="VGN19_13680"
     CDS             2101..2832
                     /locus_tag="VGN19_13680"
                     /inference="COORDINATES: protein motif:HMM:NF020091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEV7196980.1"
                     /translation="MARLTGYPVQYNKAVVGRNAFTHESGIHQHGVLADRSTYEIIEA
                     ASVGQVGRQIVMGKHSGRHAFANTLDKMGIHVQGDGLNQAFMRFKELADRKVEITEAD
                     LEAIVAEELGQDLVEGFHLEALEVAGGTVGMPRARVVVSRAGDKVEAAAEGNGMIDAA
                     CTAIRSATSVDSRLIGFNVSSVTGGVDALGDVVVQLEADGLKVSGRGVSTDVVEASAR
                     AYLAAVNRLVRIRARNEQRELEIGP"
BASE COUNT          496 a         1051 c         1041 g          466 t
ORIGIN      
        1 cagcggtagg tgtgcccctg gccctgctgg gtcagggcag ctccgacagt gtccagagtc
       61 gggcttcggc agctgcgggc ccgtcggttc gccgtcccgc gccagccgac cacgctgccc
      121 gagcttcggg aacctctggc ctttcgaaac gtgccaccgc aaccgtctac gccctgggtc
      181 ccttgagctc cgtcgatgga ttgcgcaccc gagtggtggc actcggttcg caggaattct
      241 ccgcggcggc gccccaaccg cagtcggccg cgaatgcgac cgccccgaca gcgagtggta
      301 cgaccaagac gagcgccgtg tcgggaacga caccggtcca gttcgagcgc tgcctcgcat
      361 cggccgtgca tgccgcaggc tccacgacga ccgtgagact tctcgccacc gccacgtaca
      421 agaccacgcc cgcactcgtc tatgtctttg agcccgtccc gagcgggtcg gcaacagaga
      481 atgcgggtcg gtccgcgggg gtggtcacgg cacgccaggg atgcagggtg ctggcgacga
      541 cgcgcctgtg acgcgtcggt cggcgcgcct tcgcccgccc gcggtttgtc cggagctcag
      601 ctcccggcgg aaacgcgaga gccgttgggc gccagtcgac ccggcgcggg tggcaccgtc
      661 ggccacgtgt cgaaactgcc tctctgggga ttcggcgcgc ccggttcccc ggcgaccttt
      721 ccgagcacgg cccgccccac cgctgcgatg gcgcccagtg ccgcgatcac gacgatcgac
      781 caccccagac ctcgcaccac ggctcgcaca ccgtgcagcg tagatccccg atgacgtagg
      841 tgtggatgtg ggtgtggacg tgggtgtgga cgtgggtgtg gacgtgggtg tgcttgacct
      901 gagcggctcg gtttgcaagc atgaaggttg ttatgcgtga gcaccccttc gtcaccaccc
      961 tgcttcttac ctgacggcga gcgccacatc gcgctcgccg agcccgcccc ctgagccgaa
     1021 tggccagggg gtttcttgtt gggcgaagag cccccgggga cggcagggat cccaccagag
     1081 ctgtaacaga agagctgtaa cagaagcaca gagcaccatg gcccacagag caccagggac
     1141 actcagagca cgagagcgag gacatccgat gagcgacaag cccagcgcca agcgaggccc
     1201 gaagccgtcc agccagcccg caccgtcaca gggacaggca ctgggacagc tcccgggtca
     1261 gcttcccggc gctgtagacg cgcagcacct cgtcgtgttc gacacgaccc ttcgtgacgg
     1321 agagcagtca ccgggcatct cgctcgatgt cgccgagaag ctcgagatcg cagaacagct
     1381 ggcccgggcc ggggtcgact acatcgaggc cgggttcccg gtggccagcc agggagactt
     1441 cgaagccgtg cagacgatcg cgcggtcggt cggcaacgcc ccggacgcgc cggccatctg
     1501 cggtctctcg cgcacgcagc tctccgacgt cgaccgttgt tgggacgccg tgcgcgacgc
     1561 ggcgcgtgcg cgcatccacg tgttcatctc gacgagcccc cagcacatgg agcacatgct
     1621 caagatgaac gaggcccagg tgctggccga gacgcgcggc ggcgtggccc gcgcccgaga
     1681 gcacaccgat gacgtggagt tcagccccca ggacgcgacc cgcacacccc tcgacttcat
     1741 gctggaggtg ctgcgggcat cggtcgaggc cggtgccacc acgttgaaca tccccgacac
     1801 cgtcgggtac ggcattccgt gggacttcgg cgccctgatc cagcacatcc gcaaggggtc
     1861 cccggcgact atgtgctctc gacccattgc cacaacgacc tcgggctcgc cacggccaac
     1921 accctggccg gtgtccaggc cggagctcgt caggtcgagg tgtgtgtcaa cggcctgggt
     1981 gagcgcgccg ggaacgcggc cctcgaggag gttgtcatgg ccttccggat ccggcccgac
     2041 caattccccg gcatcaccac cacggtacgc accgaggagc tggcgcgtgc ttcgcgtctc
     2101 gtggctcggc tgacgggcta ccccgtccag tacaacaagg ccgtggtggg gcgcaacgcg
     2161 ttcacccacg agtcgggcat ccatcaacac ggcgtcctgg ccgatcgttc gacctacgag
     2221 atcattgagg ctgccagtgt gggacaggtc ggtcgccaga tcgtgatggg caagcactcg
     2281 gggcgccacg cgttcgccaa cacgctcgac aagatgggca tccacgtcca gggtgacggc
     2341 ctcaaccagg cgttcatgcg gttcaaggag ctcgccgacc gcaaggtcga gatcaccgag
     2401 gccgacctcg aggcgatcgt cgccgaggag ctcggccagg acctggtcga ggggttccat
     2461 ctggaggcac tcgaggtggc tggcggcacg gtcggcatgc ctcgcgcccg cgtggtcgtc
     2521 agccgggccg gcgacaaggt ggaggccgcg gcagagggaa atggcatgat cgacgccgcc
     2581 tgcaccgcga tccgctcggc gacgagcgtg gactcgcggc tcatcgggtt caatgtgtca
     2641 tcggtgacgg ggggcgtcga cgcattgggc gatgtcgtcg tccagctcga ggccgatggg
     2701 ctgaaggtgt ccggtcgtgg tgtctccacg gacgtcgtcg aggcgtcggc ccgcgcctac
     2761 ctggcggcgg tgaaccgcct tgtccgcatc cgggcgcgca acgagcagcg cgagctcgag
     2821 atcgggccgt aggccgcgtc cgccccgtct ggtccggcgc catcaacccg acgagcgccg
     2881 acctcctgcc ggttccggac cgcaggtcag gtcagactgc cggctggacc tcggtagtac
     2941 agaacgcgca tcgccgtcgc gccggcgggg atctcactca ggcactcggg acagtccctc
     3001 gtgcccggct cggcgtcttg tcccttgcgt cggcgggcgg ccaaggcatt gatg
//
LOCUS       DASYFY010000673         4586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_941956, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000673 DASYFY010000000
VERSION     DASYFY010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4586
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941956"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1502)
                     /locus_tag="VGN19_13685"
     CDS             complement(<1..1502)
                     /locus_tag="VGN19_13685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ligase PGM1-related protein"
                     /protein_id="HEV7196981.1"
                     /translation="MTAPTAPTLADLDEAARYAVFDRLQERLPAVWDGIQTGDPLESV
                     VVVPSMTLDRVVAASSGLTQAMEERFLFMLLLLRQPRLRMVYVTSVAIDPTIIEYYLS
                     LLPGVIPSHARSRLHLVSVGDARPGALTDKLLARPRLLAAVRALIPDPLRCHLVPYTT
                     TAVERDLAIELGIPMYAADPRLFALGTKSGCRQVFSEAGVRFPAGAEDLATSAEVVTA
                     LAGLRARRPSAHWAMLKLNEGVSGSGNAMVDLGGLPAPGSPQEVAELAHRLDTMTLED
                     SSTAIDAFLAKLAQRRGIIEERVVGDEVRSPSVQLRVTPHGALEILSTHDQILGGPGG
                     QSYLGARFPADPAYARLITTEAVRIGEVLASKGVIGRFAVDFVVVRAGSAWESHAIEI
                     NLRKGGTTHPFLTLQFLTDGRYDPQAALFLTPAGEERHLVATDHLEDPVLHGLRVDDL
                     FDLVARTGMHYDQSRQRGVVFHMISAITECGRVGMTAIAETAAQAQDVYA"
     gene            complement(1499..2626)
                     /locus_tag="VGN19_13690"
     CDS             complement(1499..2626)
                     /locus_tag="VGN19_13690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196982.1"
                     /translation="MSDNGTVLVVDDLAANRKLMEAILAPRGFTVVAVASGPEALSVL
                     AERLPDVVLLDVLMPGVDGYETCRRIRAEPSTAFLPVIMVTASGERERLRALEVGADD
                     FVSKPFDQAELLARVRSLVRIKRYHDTVTEQAAELRAWNHELSSRVAEQVGELQRLGR
                     LRRFLAPQVAQEILEKGDDGILLSHRREITTVFTDLRGFTSFAETSEPEETMAVLGDY
                     HRALGELVFRFEGTLEHFAGDGLMVFFNDPVPCADAPDRAVLMAVAMRARVAELADTW
                     RWQGHDLGFGVGIAQGYATLGRVGFEGRYDYAAIGTVTNLAARLCAEARNGQILVTPR
                     VISGITGPVESRAVGPLSLKGFSRLVEAFEVLDLQPTGVTS"
     gene            complement(2626..3009)
                     /locus_tag="VGN19_13695"
     CDS             complement(2626..3009)
                     /locus_tag="VGN19_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196983.1"
                     /translation="MTRRRPKVLLVEDNERNLKLARDLLEFNGFTVFVATTGEEALAQ
                     AQRAGPDVILMDLQLPGIDGHTALARLRARPETAGIPVVAVTAFAMAADRRRALEAGF
                     DGYLEKPISIREFPQQVRRYLKGEW"
     gene            complement(3006..>4586)
                     /locus_tag="VGN19_13700"
     CDS             complement(3006..>4586)
                     /locus_tag="VGN19_13700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020143426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEV7196984.1"
                     /translation="SAVALTNARLYQQLERQSAELAEVSQHKSDFLASMSHELRTPLN
                     AVIGFSEVLLERMFGELNDRQADYLQDILSAGRHLLALLNDVLDLSKVEAGHMELDLG
                     LVDVAQTLEAVLSLVRERAHQHDIALTLDVAAAEVGTVRADPLRFKQVVLNLLSNAVK
                     FTPDGGTVKVAARRSEGSLVVTVADTGMGIDPADQVRIFDSFQQGGRNASSAEGTGLG
                     LTLTRRIVELHGGRLWLDSTPGVGSTFGFSIPQPASIAADLEAAGWKLQDDGRPVVVV
                     VEDDSSSAELVSVHVAAAGLRAVPVQTGEQGVAAVRSLHPAAVILDIRLPGMDGWEVL
                     AALKADPETADTPVVVVSVLPERGRGFALGAADYLVKPVGGDELLAALRRVVSDRTQP
                     QSGRRILVVDDDLAALRLVRVTLEPLGWDVHTCDQGTEAHAMVRAIRPQVLLVDLLMP
                     ETDGFDVVEQVHADPDTSNLPIVVLTAKSLTTEDRRRLQGRVEFVAAKGRLDLVQLSA
                     RLADLARARGAGASEVPR"
BASE COUNT          730 a         1600 c         1584 g          672 t
ORIGIN      
        1 tccgcataga cgtcctgggc ctgcgccgcc gtctcggcga tggccgtcat gccgacccgg
       61 ccgcactcgg tgatggcact gatcatgtgg aagaccacgc cgcgctgccg cgactggtcg
      121 tagtgcatac cggtccgtgc cacgaggtcg aacagatcgt ccacgcgcag accgtgcagg
      181 accgggtcct ccaggtggtc ggtggccacg aggtggcgct cctcgccggc gggcgtgagg
      241 aacagcgccg cctgcgggtc gtaccggccg tcggtgagga actggagggt gaggaacggg
      301 tgcgtcgtcc ctcccttgcg gaggttgatc tcgatggcat ggctctccca ggcggacccc
      361 gcgcgcacga cgacgaagtc gacggcgaac cgtccgatca cccctttgga tgcgagtacc
      421 tcaccgatgc gcaccgcctc ggtggtgatc aggcgcgcgt atgccgggtc agccgggaaa
      481 cgcgcgccca ggtaggactg gccgccagga ccgccgagga tctggtcatg cgtagagagg
      541 atctccaggg caccgtgcgg ggtaacccgc agctgcacac tggggctgcg cacctcgtcg
      601 ccgacgaccc gttcctcgat gatgccgcgt cgctgcgcga gcttggccag gaacgcgtcg
      661 atggcggtgg agctgtcctc caacgtcatc gtgtcgaggc ggtgagccag ctcggcgact
      721 tcctgtggac tcccgggagc cggcagcccg ccgagatcca ccatggcgtt gcctgacccc
      781 gacactcctt cgttgagctt gagcatggcc caatgcgccg acggccgacg ggcgcgcagc
      841 ccagccagtg cggtgacgac ctcggccgac gtggccaggt cctcagcacc cgccgggaac
      901 cggacgccgg cctcggagaa gacctgacga caccccgact tggtgcccag ggcgaacagt
      961 cgcgggtccg cggcatacat cgggatgccc agctcgatgg cgaggtcacg ctccaccgcg
     1021 gtggtcgtgt acggcaccag gtggcaccgg agcgggtcgg ggatcagggc acgcacggcc
     1081 gctagcaacc ggggtcgcgc caggagcttg tcggtcagcg ccccggggcg agcatcgccc
     1141 acgctgacga ggtggagccg cgagcgcgcg tggctgggga tgaccccggg tagcagtgag
     1201 aggtagtact cgatgattgt cgggtcgatc gccaccgagg tcacatagac catgcgcagc
     1261 cgcggctggc gcaagagcag gagcatgaag aggaagcgct cctccatcgc ctgggtcagg
     1321 cccgagctgg ccgccacgac gcggtcgagg gtcatcgacg ggacgacgac gaccgactcg
     1381 agagggtcgc cggtctggat gccgtcccag acggcgggca gacgctcttg gaggcggtcg
     1441 aacacggcat accgtgccgc ctcgtcgagg tccgcgaggg tcggcgcggt cggggccgtc
     1501 acgaggtcac gcccgtcggc tggaggtcga gcacctcgaa cgcctcgacc aggcgggaga
     1561 agcccttgag gctcagcggg ccgaccgctc tgctctcgac cggaccggtg atcccggaga
     1621 tcacccgcgg ggtcacgaga atctggccgt tgcgcgcctc cgcgcacaac cgggcggcca
     1681 ggttggtgac ggtcccgata gccgcgtagt cataccgtcc ctcgaaaccc acgcggccca
     1741 gcgtggcgta gccctgggcg atgccgacac cgaacccgag gtcatgtccc tgccaacgcc
     1801 aggtgtccgc gagctccgcc acccgggcgc gcatggcgac ggccatcaac accgcgcggt
     1861 cgggcgcgtc ggcacagggc accgggtcgt tgaagaagac catgagcccg tcgccggcga
     1921 agtgctcgag ggtgccctcg aagcggaaca ccagctcgcc gagggcgcgg tggtagtccc
     1981 cgagcaccgc catcgtctcc tcgggctccg acgtctcggc gaaggacgtg aagccgcgca
     2041 ggtcggtaaa gaccgtcgtg atctcgcgcc ggtggctgag caggataccg tcatcgccct
     2101 tctcgaggat ctcctgagcc acctgcgggg cgaggaaccg tcgcagccgg cccagtcgct
     2161 ggagctcgcc gacctgctct gcgacccggc tggagagctc gtggttccag gcccgcagct
     2221 cggccgcctg ctcggtcacg gtgtcgtgat agcgcttgat ccgcaccagc gaacgaaccc
     2281 gcgccaggag ctccgcctgg tcgaacggct tgctgacgaa gtcgtccgcc cccacctcca
     2341 gagcccgcaa ccgctcccgc tcgccgctgg ccgtcaccat gatgacgggc aggaacgcgg
     2401 tgctcggctc tgcccggatc ctgcggcacg tctcgtagcc gtccaccccc ggcatgagca
     2461 catcgagcag gacgacatca ggcagccgct ccgccagcac cgagagcgcc tcgggtccgg
     2521 acgccacggc gacgaccgtg aagccccggg gcgcgaggat ggcctccatc agcttgcggt
     2581 tcgctgcgag gtcgtcaacg accagcacgg ttccgttgtc gctcatcacc actccccctt
     2641 gaggtatcgg cgaacctgct gggggaactc cctgatgctg atcggcttct ccaggtagcc
     2701 gtcgaaaccg gcctccagcg ccctcctgcg atccgccgcc atcgcgaagg cggtcacggc
     2761 cacgaccggt atgccggcag tctcgggcct ggcccgcagc cgcgccagag ccgtatggcc
     2821 gtcgatgccg ggcagctgga ggtccatgag gatgacatcc ggaccggcgc gctgcgcctg
     2881 cgccagcgcc tcctcccccg tggtcgccac gaacacggtg aagccgttga actccaacag
     2941 gtcacgcgcc agcttgaggt tgcgctcgtt gtcctcgaca agcaggacct tggggcgacg
     3001 tctggtcatc tcggcacctc gctcgccccc gcccctctgg cccgtgccag gtcggcgagt
     3061 cgggcggaga gctggacgag gtcgagcctg cccttggccg ccacgaactc cacccgcccc
     3121 tgcaaccgac ggcggtcctc ggtcgtcaac gacttggcgg tgaggacgac gatcgggagg
     3181 ttggaggtgt cgggatctgc atgcacctgt tccaccacgt cgaacccgtc ggtctcaggc
     3241 atgagcaggt cgacgaggag cacctgcggg cggatggcgc gaaccatggc gtgggcctct
     3301 gtgccctggt cacaggtgtg cacgtcccag cccagtggct ccagggtgac ccggacgagc
     3361 cgcagggctg cgaggtcgtc gtcgacgacg aggatgcgac gcccggactg cggctgcgtg
     3421 cggtctgaga cgactcggcg caaggcggcc agcagctcgt cgccaccgac gggcttgacc
     3481 aggtagtccg ccgcaccgag tgcgaacccc cgtcctcgct cagggagcac cgacaccacc
     3541 acgacggggg tgtcagcggt ctcagggtcg gccttgagag cggccaagac ctcccaaccg
     3601 tccattcctg gcaggcggat gtcgaggatc accgcggccg ggtgcaagga cctgacggcc
     3661 gccaccccct gctcgccggt ctggacaggg accgcccgca gaccggcggc agcaacgtgc
     3721 acggacacca gctcggcaga gctcgagtcg tcctccacga ccaccacgac cggtcgcccg
     3781 tcgtcctgca gcttccagcc ggcggcctca aggtcggctg cgatgctcgc aggctgcggg
     3841 atgctgaagc cgaaggtgct gccgacacca ggggtgctgt cgagccagag ccgaccgccg
     3901 tggagctcca cgatccgccg ggtcagcgtc aggcccagtc cggtgccctc tgcggacgac
     3961 gcgttgcgtc cgccctgctg gaacgagtcg aagatgcgca cctggtccgc cgggtcgatt
     4021 cccatgcccg tgtcggccac ggtgacgacc aggcttcctt cggaccgccg cgcggcgacc
     4081 ttgacggtcc caccgtcggg cgtgaacttg acggcgttgc tcaggaggtt gaggacgacc
     4141 tgcttgaacc gcaacgggtc cgcccggacc gtgccaacct ctgccgccgc cacgtcgaga
     4201 gtgagtgcga tgtcgtgctg gtgggcccgc tcacgcacca aggacagcac cgcctccagg
     4261 gtctgcgcga cgtcgaccag cccgaggtcc agctccatgt gtccggcctc gaccttggac
     4321 aggtccagca cgtcgttgag taacgccaga aggtggcgcc cggcgctgag gatgtcctgc
     4381 aggtagtccg cctggcgatc gttcagctcg ccgaacatgc gctcgagcag gacctcggag
     4441 aagccgatca cggcgttgag cggtgtcctg agctcgtggg acatgctcgc caggaagtcc
     4501 gacttatgct ggctgacctc ggccagctcg gcgctctgac gctcgagctg ctggtagagc
     4561 cgggcgttcg tcagggcgac ggccga
//
LOCUS       DASYFY010000674         2884 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_836551, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000674 DASYFY010000000
VERSION     DASYFY010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_836551"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(237..313)
                     /locus_tag="VGN19_13705"
     tRNA            complement(237..313)
                     /locus_tag="VGN19_13705"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(277..279),aa:Val,seq:cac)
     gene            complement(385..795)
                     /locus_tag="VGN19_13710"
     CDS             complement(385..795)
                     /locus_tag="VGN19_13710"
                     /inference="COORDINATES: protein motif:HMM:NF021193.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PGPGW domain-containing protein"
                     /protein_id="HEV7196985.1"
                     /translation="MTPQSERDWEWRRRVRSNAHSHRLYRWAVGLAGLLIVLVGLALV
                     PLPGPGWLIVVCGVVVWASEFAWAERLRDWLVERLRVWTAWLSPQAWYVKAAVGLTTT
                     ALVLSMFYVLFLASGVPAMVPDPIEHWVTRLPGL"
     gene            complement(792..1634)
                     /locus_tag="VGN19_13715"
     CDS             complement(792..1634)
                     /locus_tag="VGN19_13715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEV7196986.1"
                     /translation="MSDVRVWVNGRLTGVDEPSIAALDHGVTVGDGAFETCKIDGGHV
                     FAATRHARRLDRTLSGLGLPAADHAYIAQGVKAVLETGEPIDFGRLRYSVTGGAGPLG
                     SDRDDSPLTYIVTAGEQPRPPASATVSVVPWVRNERSAVAGLKTTSYAENVVALAHAK
                     KRGAIEAIFANTRGELCEGTGSNIFVVRDGVVLTPPLDSGCLAGITREVALEWCREDG
                     IDAREETLPLQVLQEADEVFITSSTKDILAIHGVDDRALQPGPVTARVADLFVRRCAE
                     RMDP"
     gene            complement(1631..2656)
                     /locus_tag="VGN19_13720"
     CDS             complement(1631..2656)
                     /locus_tag="VGN19_13720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012878638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEV7196987.1"
                     /translation="MPAAAEFVRFGSVLATTPVEVRHDLSGLREGFWAVVADFEGAVT
                     AVRFADVDRHPVPAPHVPWTPLQDTWHTSLDRAAYLAGVEEVRARIAAGDVYQVNLCR
                     VMSHELADEADLGGLAQLLARGNPAPHAGRVHVPSAGLDVVCASPEAFLLRDGPRLES
                     RPIKGTADSVQTMLAKDYAENVMIVDLVRNDLSHVCREGTVRVEHLCRPEVHPGLVHL
                     VSAVAGELRAGVDWETVMAATFPPGSVSGAPKFTALKAIRDLEPVPRGPYCGAIGWVD
                     ADAGRAELAVGIRTFWAERDGQGQRWLRFGTGAGITWASDPQGEWEETQLKAARLVGL
                     ASGKVEA"
     gene            complement(2687..>2884)
                     /locus_tag="VGN19_13725"
     CDS             complement(2687..>2884)
                     /locus_tag="VGN19_13725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196988.1"
                     /translation="LGDFDTMPGSGEFRTTPLPPGDYVLQLDLSDSGRTVWFDGATSQ
                     AAATVVHLDRGEQRAVTFHLP"
BASE COUNT          473 a         1059 c          941 g          411 t
ORIGIN      
        1 tctcgcgtgt gaagcgaacg ctctaaccaa ctgagctaca cgtccagtgc cggaacggcc
       61 agcggtctca acgatgtcct gctcgcggct gccgccttcg cggtgatcgg agcgatcggg
      121 ggcttcgcct tcggacccga cccggtcaga gcgccactct tcgccccggg cgaagccccg
      181 agctcgtcgg agccgcgatg gacggccagc taggccaggt atcggctagc cactgttggt
      241 ggacgtgaag ggactcgaac ccatggcctc tcgcgtgtga agcgaacgct ctaaccaact
      301 gagctacacg tccagtgcct aaaacggctt ccgaagaata gcgggaggta ccgcgctcgg
      361 ggaaatcggc cggacgtcgg cgcctcagag ccccggaagc cgcgtcaccc agtgctcgat
      421 cgggtcaggc accatcgcgg gcaccccgga ggcgaggaac agcacgtaga acatgctgag
      481 caccaacgct gtggtcgtca gccccactgc cgctttgacg taccacgcct gcggggagag
      541 ccacgctgtc cagacgcgca ggcgctcgac cagccagtca cgcaggcgct ctgcccaggc
      601 gaactcggaa gcccacacca cgaccccgca caccacgatg agccacccag gcccgggcag
      661 cggcacgagc gccaacccaa ctagcacgat gagcaacccg gcaagaccca ctgcccacct
      721 gtagagccgg tggctgtggg cgttggaccg cacgcgacgg cgccactccc agtcgcgctc
      781 cgactgcggc gtcacgggtc catgcgctcc gcgcaccgcc gaacgaacag gtccgccacc
      841 cgggcggtga ccggaccagg ctgcagggcg cggtcgtcaa cgccgtggat ggccaggatg
      901 tccttcgtgg agctggtgat gaacacctcg tccgcctcct ggagaacctg cagcggcagg
      961 gtctcctccc gggcgtcgat cccgtcctcg cgacaccact cgagcgcgac ctcacgggtg
     1021 atcccggcca gacatccgga gtcgagcggc ggcgtcagga cgacgccatc gcggacgacg
     1081 aagatgttcg atcccgttcc ctcgcacagc tccccgcggg tgttggcgaa gatggcctcg
     1141 atggccccgc gcttcttggc gtgggccagg gcgacaacgt tctcggcata cgaggtggtc
     1201 ttgaggccgg ccaccgcgga acgctcgttg cgcacccacg gcacgacgct caccgtggcg
     1261 ctggctggtg gcctcggctg ctcccccgcc gtgacgatgt acgtcagcgg gctgtcgtcg
     1321 cggtcggagc caagtggtcc agccccaccg gtcacggagt accgcagtcg gccgaagtcg
     1381 atcggctcgc ccgtttcgag cacggccttg accccctgcg cgatgtacgc gtggtccgcc
     1441 gcgggaaggc ccaggccgct cagcgtccgg tccagccgcc gcgcgtgcct ggtagccgcg
     1501 aagacgtgac cgccgtcgat cttgcacgtc tcgaaggcac cgtctccgac cgtcacacca
     1561 tggtccagcg ccgcgatgga cggctcgtcc acaccggtca gccgtccgtt gacccacacc
     1621 ctgacatcgc tcatgcctcc accttcccag atgcgagtcc gaccagtcgc gccgctttca
     1681 gctgtgtctc ctcccactca ccctgcgggt ccgaggccca ggtgatcccc gccccggtgc
     1741 cgaaccgcaa ccaccgctgg ccttgcccgt cgcgctcggc ccagaacgtc cgaatcccga
     1801 ctgccagctc ggcgcgtccg gcgtccgcgt cgacccatcc gatcgcgccg caatacggtc
     1861 cgcgtggcac cggctccagg tcgcggatcg ctttgagggc agtgaacttc ggcgcccccg
     1921 agaccgagcc tggcggaaac gtcgccgcca tcaccgtctc ccagtcgacg cccgcccgca
     1981 gctcaccagc cacggccgac accaggtgca ccaagccggg gtgcacctcg gggcgacaca
     2041 ggtgctccac ccggacggtg ccctcccggc agacgtgaga caggtcgttg cggaccaggt
     2101 ccacgatcat gacgttctcg gcgtagtcct tggcgagcat ggtctgcacc gagtcggcgg
     2161 tccccttgat cggacgggac tcgaggcgtg gtccgtcgcg aagcaggaag gcctccgggc
     2221 tggcgcagac cacatcgagc ccggccgagg gcacgtggac ccgtccggca tggggcgccg
     2281 ggttgccgcg cgcgagcagc tgggccaacc cgccgaggtc cgcctcatcg gcgagctcat
     2341 gcgacatcac tcgacagagg ttcacctggt agacgtcgcc cgctgcgatt cgcgcgcgga
     2401 cctcctctac cccagcgagg tatgccgcgc ggtccaggct cgtgtgccac gtgtcctgca
     2461 gcggcgtcca aggaacgtgc ggggctggca ccgggtgccg gtccacgtcc gcgaaccgca
     2521 cggcggtcac cgcaccctcg aagtcggcca ccaccgccca gaagccttcg cgcaggccgc
     2581 tgaggtcgtg gcgcacctcg accggcgtcg tggcgaggac cgacccgaac cgcacgaact
     2641 ccgctgcggc tggcacgggg cgatcttagg cgccccgtgc cgtcgctcag ggcagatgga
     2701 acgtgacggc ccgttgctct ccgcggtcga ggtggacgac agtggcagcc gcctgggacg
     2761 tggcgccgtc aaaccacacg gtgcggcccg agtccgaaag gtcgagctgg aggacgtagt
     2821 cacctggagg caacggcgtg gtgcggaact caccactgcc cggcatcgtg tcgaagtcgc
     2881 cgag
//
LOCUS       DASYFY010000675         2029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_942175, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000675 DASYFY010000000
VERSION     DASYFY010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_942175"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VGN19_13730"
     CDS             <1..263
                     /locus_tag="VGN19_13730"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEV7196989.1"
                     /translation="TMDHIARTLGMDRRTLHRHLAAEGVSFSSLLHATRAGLAQHYLA
                     NDRYSMTDVCQLLGFSAPSAFTRWFHQQFGMSPSEWRSTSRA"
     gene            complement(363..>2029)
                     /locus_tag="VGN19_13735"
     CDS             complement(363..>2029)
                     /locus_tag="VGN19_13735"
                     /inference="COORDINATES: protein motif:HMM:NF014731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEV7196990.1"
                     /translation="NDGEGGILALVALLRRHLQGTRRLAAVMVMGVLGAALFYGDAVI
                     TPAISVMSAIEGVAVADPSLAELIVPLTVAVLSLLFVIQRWGTGVVGRSFGPVMVLWF
                     AVLLLLGLPHVFANPEILAAISPTYALTFVAEHPLVAFVAMGGVVLTITGAEALYADM
                     GHFGAKPIRLAWYLVVFPALAVNYLGQGAMILGDPAAVSNPFFLLAPTWATLPLVLLA
                     TVATVIASQAVISGAFSVSRQAVRLGMLPRLAVRHTSREEGGQIYVPVMNWILFAVVL
                     LLTVTFRSSSRLAAAYGLAVTGTLLLTSALFLLLARYVWRVQTWKLVVYLVLVVGVEL
                     TFLGANLTKVVAGGWLPLVIAALVVALMTTWRRGADALHSEERDLEGPLPLFLRMLHK
                     HPELVRRVPGVAVFPHPNATTTPLALRTNADFNRVVHDRVILVQIVNENVPHIRHVDR
                     VEVDDLGDATDGFVHVKVHVGFTDSQDIPKGLALAVGKTPELDIDLDEARYFLSVLTV
                     QATGHRGLRTWRKRLFAWMYHNAANRTEVFHLPPERTIVMGAHIEL"
BASE COUNT          361 a          675 c          716 g          277 t
ORIGIN      
        1 gcacgatgga ccacatcgcc cggaccctcg gcatggatcg tcgaaccctt caccgccacc
       61 tcgcggccga gggggtgtcg ttcagctcgc tcctgcacgc gacgcgcgcc gggctcgccc
      121 agcactacct cgccaacgac cggtactcca tgaccgacgt ctgccagctg ctgggcttct
      181 ccgccccgag cgccttcacc cggtggttcc accagcagtt cgggatgagc cccagcgagt
      241 ggcgctcgac gagccgtgcc tgaccacggg gggtcctgag tccgtcccag tcgacgccgc
      301 tcggtcaggt cccagtcatg cgcacgttcc cgcccatcgc ggcgccgtgg cctcccggga
      361 tgtcagagct cgatgtgggc gcccatcaca atggtccgct cgggcggcag gtggaagacc
      421 tctgtccggt tcgccgcgtt gtggtacatc cacgcgaaca accgcttgcg ccatgtgcgc
      481 agcccgcggt ggccggtggc ctggacggtc agcacggaca ggaagtagcg ggcctcgtcg
      541 aggtcgatgt cgagctcggg cgtcttgccg accgcgaggg ccagcccctt ggggatgtcc
      601 tggctgtcgg tgaagcccac gtgcaccttg acgtgcacga agccgtcggt cgcgtcaccg
      661 aggtcgtcga cctcgacgcg gtcgacgtgc cggatgtgcg gcacgttctc gttgacgatc
      721 tgcacgagga tgactcggtc gtgcaccacg cggttgaagt cggcgttggt gcgcaaagcg
      781 agcggcgtag tcgtcgcgtt ggggtgtggg aagaccgcga cgccaggcac ccgtctgacc
      841 agctcagggt gtttgtggag catcctgaga aagagtggca gcgggccctc gaggtcccgc
      901 tcctcggaat gcagcgcatc cgcgccacgc cgccacgtcg tcatgagggc gacgacgagg
      961 gcggcgatga cgagtggcaa ccatccaccg gccacgacct tggtgaggtt ggcgccgagg
     1021 aaggtcagct cgacgccgac gacgaggacc aggtagacga cgagcttcca ggtctgaacc
     1081 ctccacacgt atcgggcgag cagcaggaac agggcgctgg tcaacaacag ggttcccgtc
     1141 acggccagac cgtatgcggc ggccagtcgg ctcgagctgc ggaacgtcac cgtcagcagg
     1201 agcactacgg cgaagaggat ccagttcatc accgggacgt agatctggcc tccctcctcg
     1261 cgggaggtgt gtcgcaccgc gagccgggga agcatcccga gccgcaccgc ctgccgcgag
     1321 acggagaacg cgccggagat gacggcctgg gacgcgatga ccgtggccac ggtggcgagc
     1381 aggaccagcg gcaacgtggc ccaggtcggg gcgaggagga agaacgggtt ggacacggcg
     1441 gccgggtcac cgaggatcat cgcgccctgc ccgaggtagt tgacggcgag tgcggggaag
     1501 acgacgaggt accacgcgag gcgaatgggc ttggcaccga agtggcccat gtccgcgtag
     1561 agcgcctcgg ctccggtgat cgtcagcacc acgccgccca tcgccacgaa cgcgacgagc
     1621 gggtgctcgg cgacgaacgt caacgcatac gtgggcgaga tcgccgcaag gatctcgggg
     1681 ttggcgaaga cgtgcggcag gccaagcagc aggagcaccg cgaaccagag caccatcacg
     1741 ggtccgaagg accggccgac gaccccagtc ccccaccgct ggatgacgaa gagcagggac
     1801 aggacggcga cggtgagcgg cacgatgagc tctgcgagcg acgggtcagc caccgcgacc
     1861 ccctcgatcg ccgacatgac cgagatggcg ggcgtgatca cggcatcgcc gtagaacagc
     1921 gcggccccga gcacgcccat gaccatcacc gcagcgagcc ggcgggtgcc ctgcaggtgg
     1981 cggcgcagca gcgccacgag cgcgaggatg ccgccctcac cgtcgttgt
//
LOCUS       DASYFY010000676         1558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_153571, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000676 DASYFY010000000
VERSION     DASYFY010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153571"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1542)
                     /locus_tag="VGN19_13740"
     CDS             complement(<1..1542)
                     /locus_tag="VGN19_13740"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEV7196991.1"
                     /translation="MSARGEIAELAETINSLTDTLRLFADEVTRVAREVGTEGRLGGQ
                     AAVPDVAGTWKNLTEAVNLMAANLTGQVRGIAQVATAVARGDLSQKITVDARGEILEL
                     KSTVNTMVDQLSSFADEVTRVAREVGTEGTLGGQAQVPNVSGTWRDLTDNVNQLADNL
                     TGQVRNIAQVTTAVARGDLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVARE
                     VGTEGKLGGQAQVRGVSGTWRDLTESVNQLAGTLTTQLRAISAVSTAVARGDLTEQIQ
                     VAALGEVAQLKDNINQMIAALRETTAENAEQGWLDSNLARVGGLLQGQRDLGDVSQMI
                     MQEVAPLVGAQVGTFFLAADPGGLGETSTPARWVMCGGYAVPVGDPPREFRSGEGLVG
                     QAAMSKQSIVVTEVPPGYLDVRSGTGTGAPGAIVALPVLFEGESLAVIELGATTPFSA
                     LHLTFLERLVTTIGVALATIQAGRRTEELLTQSQRLTTELQDQSAELQRTNAELEEKA
                     LQLSEQ"
BASE COUNT          208 a          573 c          523 g          254 t
ORIGIN      
        1 ctgctcggac agctgcagcg ccttctcctc cagctcggcg ttggtccgct gcagctctgc
       61 ggactggtcc tgcagctcgg tggtcagccg ctgcgactgg gtgagcagct cctcggtgcg
      121 ccggccggcc tggatggtcg ccagcgccac gccgatcgtg gtgaccagcc gctcgaggaa
      181 ggtcaggtgc agcgcggaga acggtgtggt ggcaccgagc tcgatcaccg ccagtgactc
      241 gccctcgaac aggaccggaa gggcgacgat cgcgccgggt gcacccgtgc ccgtgccgga
      301 acgcacgtcc aggtagccgg gaggtacctc ggtgacgacg atgctctgct tgctcatcgc
      361 ggcctggccg accaggccct cgcccgaccg gaactcccgc ggcggatccc ccaccggcac
      421 cgcgtacccg ccgcacatga cccagcgggc gggcgtgctg gtctccccca gcccacctgg
      481 atcggcggcc aggaagaagg tgccgacctg cgccccgacg aggggggcga cctcctgcat
      541 gatcatctga ctcacgtcgc cgaggtcgcg ctggccctgc agcaggccgc cgacacgggc
      601 gaggttggag tccagccagc cctgctcggc gttctccgca gtggtctcgc gcagcgccgc
      661 gatcatctga ttgatgttgt ccttgagctg cgcgacctcg cccagggcgg cgacctggat
      721 ctgctcggtg aggtcaccgc gggccaccgc ggtcgagacc gcggagatcg cgcgcagctg
      781 ggtggtgagc gtgccggcga gctggttgac gctctcggtg aggtcccgcc acgtgcccga
      841 gacgccgcgc acctgcgcct ggccgccgag cttgccctcg gtacccacct cgcgggccac
      901 gcgcgtgacc tcgtcggcga acgaggacag ctgatcgacc atcgtgttga ccgtcgactt
      961 cagctccagg atctccccgc gcgcatccac ggtgatcttc tggctcaagt cgccccgggc
     1021 caccgcggtg gtcacctggg cgatgttgcg cacctgcccc gtcaggttgt ccgccagctg
     1081 gttcacgttg tcggtgaggt cgcgccaggt gcccgagacg ttgggcacct gcgcctgccc
     1141 gcccagcgtg ccctcggtac ccacctcgcg ggccacgcgg gtgacctcat cggcgaacga
     1201 ggacagctgg tcgaccatcg tgttgaccgt cgacttcagc tccaggatct ccccgcgcgc
     1261 atcgacagtg atcttctggc tcaggtcacc ccgggccacc gccgtggcca cctgcgcaat
     1321 gccgcgcacc tgtccggtga gattggccgc catcaggttc acggcctcgg tgaggttctt
     1381 ccaggtgccg gccacgtcgg gcaccgcggc ctgcccgccg agccggccct cggtgcccac
     1441 ttcgcgggcc acccgggtca cctcgtcggc gaacagccgc agcgtgtcgg tcagtgagtt
     1501 gatcgtctct gccagttccg cgatctcgcc ccgagccgac acggtgatct tgcgggac
//
LOCUS       DASYFY010000677         1583 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1101654, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000677 DASYFY010000000
VERSION     DASYFY010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1101654"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VGN19_13745"
     CDS             complement(<1..427)
                     /locus_tag="VGN19_13745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7196992.1"
                     /translation="MRRDQGAGWFALLVVAAVTLFAIPFYRYGPHLRRCTPPGDVVRA
                     CTVYPTLALWYWPAALVLGYVAIAWFYVRRARRRGVGTRVQPYVAVGVVLGLLAAAWL
                     VWALVHPASLAATLRLGAPQPSSFLLRLSGPAGALGVALL"
     gene            625..831
                     /locus_tag="VGN19_13750"
     CDS             625..831
                     /locus_tag="VGN19_13750"
                     /inference="COORDINATES: protein motif:HMM:NF016840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF664 domain-containing protein"
                     /protein_id="HEV7196993.1"
                     /translation="MVADFRAAIEESNGHITATGSPDAVSVVAVDGELKTLRWIRAHT
                     TSEVIRHVGQADILREQIDGVTGR"
     gene            complement(842..>1583)
                     /locus_tag="VGN19_13755"
     CDS             complement(842..>1583)
                     /locus_tag="VGN19_13755"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEV7196994.1"
                     /translation="STRLVGGGGTSWRVRDVVLKPGIEPAFQEWLGTEVSQVDQHGFR
                     LPVVLRAVDGQWVAEGWGAYSAVPGSAAQPPIGDWREVIAAARALHAATTGLGRPAFL
                     ASRSDPWAVADRAAWGEGACDVRPELREHVRRLNTALAPLGPSQLVHGDLTGNVLITA
                     SGPPSIIDFSPYWRPPSYAEGIVVADALCWHGATPDIITDLGVPTAAVARGLLFRMLT
                     TVNDERHTEDRLRDEVRRYSSALDALNL"
BASE COUNT          301 a          529 c          549 g          204 t
ORIGIN      
        1 cgagcagggc cacgccgagc gcacccgctg gaccgctgag ccgcaacaag aaggagctgg
       61 gttgcggggc gccgaggcgc agggtcgcgg cgagggacgc cgggtgcacc agtgcccaca
      121 cgagccaggc agcggctagt agaccgagga cgacgccgac agcgacgtag ggctgcaccc
      181 gggtaccgac ccctcgccgt cgtgcgcgcc gcacgtagaa ccaagcgatc gcgacatagc
      241 ccaggacgag cgccgccggc cagtaccaca gcgccaacgt ggggtagacg gtgcaggcgc
      301 ggacgacgtc accgggaggt gtgcagcgcc tcaggtgggg tccgtaacgg tagaacggga
      361 tggcgaagag ggtcacggca gccaccacga ggagcgcgaa ccatcccgcg ccctggtcgc
      421 gacgcacggt ccgggtgagc tcgtgaactc tcccgagctg acgccgagga ccatccggcg
      481 caggtgaatc cgcatccatg gtcatgcaaa caggtttgca ttgcaaacct gttttgtcca
      541 gagagcggat gacacctcga gcagccaccg acagcgcgcg aagagcgtgg agagctgggg
      601 atcgccctgg cgttcctcgc agaagtggtc gcagactttc gtgccgcgat cgaggagagc
      661 aacggccaca tcacagcaac cggctcaccg gacgccgtca gcgtcgtcgc cgtggacggc
      721 gagctgaaga cgctgcgttg gatccgggcc cacacgacca gcgaagtcat ccgccatgtg
      781 ggtcaagccg acatcctgcg cgagcagatc gacggcgtga ccggccgctg aaggcatgag
      841 gtcacaggtt cagggcatcg agcgcggacg aatagcgtcg aacctcatcc ctcaggcggt
      901 cttcggtgtg ccgctcgtcg ttcaccgtcg tcagcatgcg gaagagcagt ccacgtgcga
      961 cggcagcagt cggaacgccg aggtcggtga tgatgtcggg cgttgcaccg tgccagcaca
     1021 gggcatccgc gacgacgatc ccctcggcgt acgacggtgg ccgccagtag ggcgagaagt
     1081 cgatgatcga gggcggtccg ctggctgtga tgaggacgtt gccggtgagg tcgccatgga
     1141 cgagctgaga cgggcccagc ggtgccagcg ccgtgttcag ccggcgaaca tgctcacgca
     1201 gctctggtcg gacgtcgcaa gccccctctc cccaagccgc ccggtctgcc acggcccacg
     1261 ggtcgctgcg tgaggccagg aacgcgggac gccccaggcc ggtcgtcgca gcatgcagcg
     1321 cacgagcggc ggcgatgacc tcgcgccagt cgccgatcgg tggctgtgcg gcggagccgg
     1381 gcaccgctga gtaggcgccc cacccttcag caacccactg accatccacg gctcggagca
     1441 ccacaggaag tcggaaaccg tgctggtcga cctgtgacac ctcggtgccc agccactcct
     1501 gaaaggccgg ctcgataccc ggcttgagga cgacgtcgcg gactcgccac gacgtgccac
     1561 caccgcccac caacctcgtc gac
//
LOCUS       DASYFY010000678         1995 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1521192, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000678 DASYFY010000000
VERSION     DASYFY010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1521192"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /locus_tag="VGN19_13760"
     CDS             complement(<1..674)
                     /locus_tag="VGN19_13760"
                     /inference="COORDINATES: protein motif:HMM:NF014646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEV7196995.1"
                     /translation="MYTIRHASVLTGVPVATLRAWERRYGVVHPARTDAGYRLYDEQA
                     VQTLGAMAALVSAGWSPRQAAEQVAEGAGATAAGALTFTRSSLDQLELEALSRAAAAH
                     DPEAVERALDAAFAVDALEIVVDGWLMPALHLLGTEWHEGRVDVAGEHLVSAAVHRRL
                     GAALDAASRASTTPRVLVGLGHGVRHELGVLAFAVLLRRTGVDVAYLGADLPAGSWVK
                     AARHHRP"
     gene            867..>1995
                     /locus_tag="VGN19_13765"
     CDS             867..>1995
                     /locus_tag="VGN19_13765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019482495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7196996.1"
                     /translation="MRAPRRAVIGSGVAGLTAAHVLGMQGPVTLYEADQRLGGHADTH
                     VVTIDGRTINVDTGFIVHNDRTYPTLLRLFAELGVRTQDSDMSMSVRCDDQALEYAGA
                     KGPRGLFPVAGNLANPAYLRMLGEVRRFHREARRLLARPRPEAAQETLAAFVQRVRFS
                     DYFARCFLEPLVAAVWSCDPSLSLQYPARYLFEFLDHHGMLTVFGSPNWRTVVGGSAR
                     YVEKVAAGIDEIRLGSPVRSVTERGEGVLVHDERGGVEAYDSVVIATHPHQALAMLAA
                     PTVAQREVLGAMPYSRNVAQLHTDQSVLPRSEGARASWNYWQRATGSDGVLVTYDMTR
                     LQRLDTGDTRLLVTLNGVDCVDQALVLDTMHYEHPLYTPESV"
BASE COUNT          314 a          705 c          675 g          301 t
ORIGIN      
        1 gggcggtggt gtcgcgccgc cttcacccag ctccctgccg ggaggtcggc gcccagatag
       61 gcgacgtcga cgccggtgcg tcgcagcagg acggcgaagg cgaggacgcc cagctcgtgc
      121 cgcaccccgt gccccaggcc gaccaggacc cgtggggtag tgctcgcccg gctcgctgcg
      181 tcaagcgcgg cgccgagccg tcggtgaacg gcggcgctga cgaggtgctc accggccacg
      241 tcgacccggc cctcgtgcca ttcggttccg agtagatgca gggccggcat gagccagccg
      301 tcgaccacga tctcgagggc gtcgacggcg aaggcggcgt caagggcccg ttcgacggct
      361 tcggggtcat gggcagcggc agcccgcgac aacgcctcga gctcgagctg gtcgagggag
      421 ctgcgggtga aggtgagagc gcccgctgcc gtcgcccctg ccccttcggc gacctgttcg
      481 gctgcctggc ggggggacca tcccgcggag accagtgcgg ccatcgcgcc gagagtctgc
      541 accgcctgct cgtcgtacag ccggtaaccg gcatcggtgc gggcggggtg gaccacgcca
      601 tagcgccgct cccacgcgcg cagagtcgcc acgggtacgc cggtcagaac cgacgcgtga
      661 cgaatcgtgt acatcgctgc agcctagccc caaaccttcg acaaaggctg gacaacgcgc
      721 cgctcctgcg tcatgatcaa ccccgttgaa ccttaaacaa accttagaca gaaggttgca
      781 gccgaccggg cgccaatccg ctacgagcca caccccgaac tactcatgta cgtctgagga
      841 cccctcacca cactggatgg agtgccatgc gagcaccacg ccgcgccgtc atcggcagcg
      901 gagtcgccgg cctgaccgct gcccacgtcc tgggcatgca gggcccggtg accctgtacg
      961 aggcggacca gcggttgggc ggtcacgccg acacccatgt ggtcaccatc gacgggcgca
     1021 ccatcaacgt cgacaccggg ttcatcgtgc acaacgaccg cacctacccg accttgcttc
     1081 gcctgttcgc cgagctgggg gtccggaccc aggactccga catgagcatg tccgtccgtt
     1141 gcgacgacca agccctggag tatgccggtg ccaagggtcc gcggggcttg ttccccgtgg
     1201 ccggcaacct ggccaacccg gcatacctgc gcatgctggg cgaggttcga cgcttccacc
     1261 gcgaggcccg gcggttgctg gccaggccgc ggccggaggc cgcgcaggag accctggctg
     1321 cgttcgtgca acgggtgcgg ttcagcgact acttcgcgcg ctgcttcctc gagccgttgg
     1381 tcgcggcggt gtggtcgtgt gaccccagcc tgtccctgca gtacccggcc cggtatctct
     1441 tcgagttcct cgaccatcac ggcatgctca cggtgttcgg gtcgccgaac tggcgaaccg
     1501 tcgtgggggg ctccgcgcgg tacgtggaga aggtggcggc cgggatcgac gagatccggc
     1561 tgggcagccc ggtccgctcg gtcaccgagc gcggggaagg ggtcctggtc cacgacgagc
     1621 ggggcggcgt ggaggcgtat gactcggttg tcatcgcgac gcacccccat caggcgcttg
     1681 ccatgctcgc ggcaccgacc gtcgctcagc gcgaggtgct cggcgcaatg ccctactcgc
     1741 gcaacgtggc ccagctgcat acggaccagt ctgtgctccc gcgtagcgaa ggtgcccggg
     1801 cctcctggaa ctactggcag cgcgcgaccg gctcggacgg cgtcctggtg acgtatgaca
     1861 tgacgcggct gcagcgactc gacacagggg acacccgact gctggtgacc ctcaacggcg
     1921 tcgactgcgt cgaccaggct ctcgtcctcg acaccatgca ctacgagcac ccgctctaca
     1981 cccctgaatc cgttg
//
LOCUS       DASYFY010000679         1708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1626364, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000679 DASYFY010000000
VERSION     DASYFY010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1626364"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..750
                     /locus_tag="VGN19_13770"
     CDS             <1..750
                     /locus_tag="VGN19_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013838591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043248 - proteasome assembly [Evidence
                     IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEV7196997.1"
                     /translation="LHLEDVWQAAQVAALDPEDYYDFQVNRPEVGLAEDGSREITWPT
                     TRLSVARIPLATRDVVLVHGIEPSMRWRAYVEELLGAARDLGVEMIVTLGALLADTPH
                     TRPVPVTGSASDSALATRMGYEPSTYEGPTGIVGVLAEACTRAGIASVSLWAAVPHYV
                     SQPPCPKATLALLGQIEDLLDVPVPLGELPEAARAWQDGVDELAAEDEEVAAYVRQLE
                     DVRDTETLPEASGEAIAREFERFLRRRATEG"
     gene            complement(776..>1708)
                     /locus_tag="VGN19_13775"
     CDS             complement(776..>1708)
                     /locus_tag="VGN19_13775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020017769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEV7196998.1"
                     /translation="QADVSRHFVAVSTNASGVSDFGIDTANMFGFWEWVGGRYSMDSA
                     IGLSTMLAVGPDHFDDLLAGFHAMDVHLRDTPLEQNLPVLMGLVQVWNRCFLGCPTQA
                     VLPYEQYLDRFPAYLQQLTMESNGKSVTIDGSPVGVDTGAIWWGEPGTNGQHSFYQLL
                     HQGTTVVPADFLLFARPLQPIGDHHVKLAANVFAQSHVMAFGRTADQVAAEGTAPDLV
                     PHKVMPGNRPSTTLLLEQLTPFALGSLVALYEHVTLTQGVIWGIDSFDQWGVELGKAM
                     AAKLLPAVSGAGEPPGEFDPSTLALLQAYRGLAT"
BASE COUNT          255 a          575 c          631 g          247 t
ORIGIN      
        1 ctgcacctgg aggacgtgtg gcaggccgcc caggtcgcgg cgctggatcc tgaggactac
       61 tacgacttcc aggtgaaccg gcccgaggtc ggcctcgcgg aggacggctc ccgggagatc
      121 acctggccca cgacgaggct gtcggtggcc cgtatcccgc tggcgacccg ggacgtggtg
      181 ctggtccacg ggatcgagcc gtcgatgcgg tggcgggcgt acgtcgagga gctgctcgga
      241 gcggctcgcg acctcggcgt ggagatgatc gtcaccctcg gcgccctgct cgccgacacc
      301 ccgcacaccc gcccggtgcc ggtgacgggt tccgcaagcg actcggcgct ggcgacgcgg
      361 atgggttacg agccgtcgac gtacgagggc ccgaccggca tcgtgggggt gctggccgag
      421 gcctgtacgc gcgccgggat cgcgtcggtc tcgctctggg ccgcggtacc gcactacgtg
      481 tcgcagccgc cctgcccgaa ggccaccctc gcgctgctgg gccagatcga ggacctgctg
      541 gacgtacccg tgccgctcgg ggagctgcca gaagccgcgc gtgcctggca ggacggggtc
      601 gacgagctgg ccgcggagga cgaggaggtg gcggcgtacg tccggcagct ggaggacgta
      661 cgagacaccg agaccctgcc ggaggcctcc ggcgaggcca tcgcccggga gttcgagcgc
      721 ttcctgcgcc gccgagccac cgaaggctga ccgttcgcgg ttgcagcggc ctccgtcagg
      781 tggcgaggcc tcggtaggcc tgcaggaggg cgagggtgct ggggtcgaac tcccccggtg
      841 gctcgcccgc acccgagacc gccggcagca gcttggctgc catggccttg ccgagctcga
      901 cgccccactg gtcgaaggag tcgatgcccc agatcacgcc ctgggtcagc gtcacgtgct
      961 cgtacagggc cacgagggag cccagcgcaa acggggtgag ctgttcgagc agcagggtgg
     1021 ttgacggtcg gttgccgggc atcaccttgt gcggcaccag gtccggcgca gtgccttcgg
     1081 cggcgacctg gtcggcggta cggccgaacg ccatcacgtg cgactgcgcg aagacgttcg
     1141 cggccagctt gacgtggtgg tcgccgatcg gctggagggg acgggcgaag agcaggaagt
     1201 ccgcgggtac gacggtcgtt ccctggtgca gcagctggta gaacgagtgc tgcccgttgg
     1261 tccccggctc gccccaccag atggccccgg tgtccacacc gaccggcgac ccgtcgatcg
     1321 tgacggactt gccgttgctc tccatggtga gctgctgcag gtacgcgggg aaccggtcca
     1381 ggtactgctc gtacggcagg accgcctgtg tcgggcaccc gaggaagcag cggttccaca
     1441 cctgcaccag gcccatgagc accggcaggt tctgctccag cggggtgtcg cgcaggtgca
     1501 cgtccatcgc gtggaagccc gccagcaggt cgtcgaagtg gtccgggccg accgccagca
     1561 tcgtggacag cccgatcgcc gagtccatcg agtagcgacc gccgacccac tcccagaacc
     1621 cgaacatgtt ggccgtgtcg atgccgaagt ccgagacccc cgatgcgttg gtggagacgg
     1681 ccacgaagtg ccgcgagacg tccgcctg
//
LOCUS       DASYFY010000680         2343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_680060, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000680 DASYFY010000000
VERSION     DASYFY010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680060"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VGN19_13780"
     CDS             <1..322
                     /locus_tag="VGN19_13780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEV7196999.1"
                     /translation="ATTTPPNVADVEEAMRDVVDPELGINVVDLGLVYGITVDAQNHA
                     VLDMTLTSAACPLTDVIEDQTAQALEGLVSSYRVNWVWMPPWGPDKITDDGREQLRAL
                     GFNL"
     gene            339..902
                     /locus_tag="VGN19_13785"
     CDS             339..902
                     /locus_tag="VGN19_13785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acVLRF1 family peptidyl-tRNA hydrolase"
                     /protein_id="HEV7197000.1"
                     /translation="MTSRVVEVSPERLAGWLERFAAQNSGPDAPQCIVAQERFDHEPL
                     AVVLIRRGGYAVGLARGGAFTESKVGTRHVQSRTAAGGWSQQRFARRRGNQADELVRA
                     VADHALRLLPRGIPAAVVVGGDKALVRAVLDDPRLAHLSAVPRRELFDLPDPRRAVLE
                     DALRRGRAVRVTVEDDAGPAARALPVD"
     gene            1025..>2343
                     /locus_tag="VGN19_13790"
     CDS             1025..>2343
                     /locus_tag="VGN19_13790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEV7197001.1"
                     /translation="MIAASGIELRAGSRLLLEGATFRIAAGDRVGLVGRNGAGKTTLT
                     KVLAGQGQPAAGSVTFSGEVGYLPQDPRTGDLHVLARDRILSARGLDRIISQLRKAEA
                     DMASTDDETREKAMRRYTRLEGEFTAQGGYAAESEAASIASALALEERILGQPLSTLS
                     GGQRRRVELSRILFSGAETLLLDEPTNHLDADSIGWLRDYLKGYQGGLVVISHDVELL
                     DAVVNRVFHLDANRGEMDLYNVGWKPYLMQRETDERRRKREYANATKKAGALMEQAEK
                     MRAKATKAVAAQNMIKRAERMLASVEGERTSDKVAKLRFPDPASCGKTPLRASGLSRS
                     YGSQEVFTDVDLAIDRGSRVVVLGLNGAGKTTLLRMLAGVDTPDTGQVEPGHGLKLGY
                     YAQEHENLDITRSVLANMKSAAPDSFGETEVRKVLGSFLFSGDDVNKP"
BASE COUNT          359 a          824 c          807 g          353 t
ORIGIN      
        1 agcaaccacc accccgccca acgtggccga cgtcgaggag gccatgcgcg acgtcgtcga
       61 ccccgagctc ggcatcaacg tcgtcgatct cggcctggtc tacggcatca cggtcgacgc
      121 ccagaaccac gccgtcctgg acatgacgct gacctcggcg gcgtgcccgt tgaccgacgt
      181 catcgaggac cagaccgccc aggctctcga ggggctcgtc tcctcgtacc gcgtgaactg
      241 ggtgtggatg ccgccgtggg gaccggacaa gatcaccgac gacggtcgcg agcagctgcg
      301 cgccctcggc ttcaacctct gaccgcggtc atccaccggt gacgagccgc gtcgtcgagg
      361 tctcccccga gcgcctcgcg ggttggctcg agcggttcgc cgcgcagaat tccggacccg
      421 atgcgcctca gtgcatcgtg gctcaggagc gcttcgacca cgagcccctt gccgtcgtcc
      481 tcatccgtcg cggtgggtat gccgtgggcc tggctcgtgg cggggcgttc accgagtcca
      541 aggtgggtac ccggcacgtg cagtcccgta cggcggccgg cggctggtcg cagcagcgat
      601 tcgcgcgacg acgtggcaac caggccgacg agctggtgcg ggccgtcgcc gaccacgcgc
      661 tgcgtctgct gccacgcggc atacctgcgg ctgtggtggt gggcggcgac aaggcgctgg
      721 tccgcgcggt cctggacgac ccgcggttgg ctcacctcag cgccgtgcct cgccgcgagc
      781 tctttgacct gccggaccct cgccgggcgg tgctggagga cgcgctgcgt cgggggaggg
      841 ccgtgcgggt caccgtcgag gacgacgccg gacccgcggc ccgcgcgctg ccggtagact
      901 gaccccctcg acctctgcgc ggcgtaccgc atcgtttcgg agcgccccac cccctatgtc
      961 ctttgcctgt gtcctgtgcc cgtcgcttgc ttcctaagcg ctgtctgatg tctggagttc
     1021 tgtcgtgatt gccgccagtg ggatcgagct tcgcgctggg tcccgactcc tgctcgaagg
     1081 agccaccttc cgaatcgcag cgggggaccg ggtcgggctc gtcggacgca atggcgcggg
     1141 caagacgacg ctgaccaagg tgctcgcagg ccagggacag cccgccgccg gcagcgtgac
     1201 gttcagtggc gaggtgggct acctgcctca ggacccgcgg accggagacc ttcacgtcct
     1261 ggcgcgagac cggatcctgt ccgcccgggg cctggaccgc atcatcagcc agctgcgcaa
     1321 ggccgaggcc gacatggcca gcaccgacga cgagacccgc gagaaggcca tgcggaggta
     1381 cacccggctc gagggtgagt tcaccgctca gggcgggtat gcggcggagt cggaggcggc
     1441 ctccatcgcc agcgcgctcg cgctcgagga gcgcatcctc gggcaacccc tgtcgacgct
     1501 gtcgggtggt cagcgccgcc gcgtcgagct gtcccggatc ctgttctccg gcgccgagac
     1561 cctgctgctc gacgagccga ccaaccacct cgacgccgac tccatcggct ggctgcgcga
     1621 ctacctcaag ggctaccagg gtgggctcgt ggtgatcagc cacgacgtgg agctcctcga
     1681 cgccgtggtc aaccgggtgt tccacctgga cgccaaccgt ggcgagatgg atctctacaa
     1741 cgtgggctgg aagccctacc tcatgcagcg cgagaccgac gagcgtcggc gcaagcggga
     1801 gtacgccaac gccacgaaga aggccggcgc cctcatggag caggctgaga agatgcgcgc
     1861 caaggcgacc aaggctgtcg ccgcgcagaa catgattaag cgcgcggagc ggatgctcgc
     1921 cagcgtcgag ggcgagcgta cgagcgacaa ggtcgccaag cttcgcttcc ccgaccccgc
     1981 gtcgtgcggc aagacccctc tgcgggcctc gggtctgtcc cggtcctatg gcagccagga
     2041 agtcttcacc gacgtggacc tggccatcga ccgtgggtcc agggtcgtcg tgctcgggct
     2101 gaacggtgcg ggcaagacca ccctgctgcg gatgctcgcg ggcgtcgaca ccccggacac
     2161 cgggcaggtc gagccgggcc acgggctcaa gctcggctac tacgcgcagg agcacgagaa
     2221 cctcgacatc acccgctcgg tgctcgccaa catgaagtcg gccgcgcccg actcgttcgg
     2281 cgagaccgag gtgcgcaagg tgctcgggtc gttcctgttc agcggcgacg acgtcaacaa
     2341 gcc
//
LOCUS       DASYFY010000681         9030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1521276, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000681 DASYFY010000000
VERSION     DASYFY010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 9030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9030
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1521276"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..795
                     /locus_tag="VGN19_13795"
     CDS             <1..795
                     /locus_tag="VGN19_13795"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEV7197002.1"
                     /translation="VVSVDQWGDITSALGGECAQVTTILASSSVDPHTYEPTTGDLAE
                     FSGARLVVINGAGYDTWASKAVATLSPTPAVVDGGAVVGVASGANPHLWYNPSYVYRI
                     AAAITAALTAAQPGAAPYFEQQAAAWRTSMKAYDEQIAAIRAAAAGRTYGATEGVFDY
                     MAAAVGLRNLTPRGWQNAAANDSDPAPGDVLGFDNALNSKEMSVLIYNTQTEGPLPAQ
                     VAATAVSAGVPVVEVTETVAAGSTSFLQWQLSQLKSLAAALGVHGS"
     gene            792..1562
                     /locus_tag="VGN19_13800"
     CDS             792..1562
                     /locus_tag="VGN19_13800"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7197003.1"
                     /translation="MTEPQPTARLRDVSVARGGRTVWNEGSFDIAPGAVVGVIGPNGS
                     GKTTLLKVLLGLLPVASGTVQVLGSSPQRGNPAIGYVPQNYTATTGEAVRARDLVGLG
                     ISGSRWGAGRLSSADRDKVTRSLAAVSALDLADRRMSQLSGGQQQRVAIAQALVDDPA
                     LLLLDEPLANLDVRNQREIVGLLADLNGERGVTVLVVAHDLNPLLSALTGAIYLLDGH
                     AHYDGLDDVVNSELLSHLYGTAIKVVRTPQGDLFTRTA"
     gene            1559..2473
                     /locus_tag="VGN19_13805"
     CDS             1559..2473
                     /locus_tag="VGN19_13805"
                     /inference="COORDINATES: protein motif:HMM:NF013143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEV7197004.1"
                     /translation="MNTHGLLAEITFQSNWVQVLQAPFMRNAIIGGSIVALVSGIIGY
                     FVIVRSSSFATHALAHIGFPGATGAVLVGAPVTLGLAVFCVAGALAIGALGRRASERD
                     VATGTILAFATGLGIMFASLATRNTSTVTNVLFGNLLAITSDQLWVFAAFAVVIALAI
                     AYAFRPLLFASIDVEVAQARGVPVRGLGIVFMVLLALVITMAVQVVGTLLLFALVVTP
                     AATAIAWTARPGYAIAASAGIALVSVWLGLVLAVMFDLPPSFFIVTIATMIWLATWLL
                     SRRSGQDAIHRDAHGDHHHTGHEPSLTA"
     gene            complement(2516..2905)
                     /locus_tag="VGN19_13810"
     CDS             complement(2516..2905)
                     /locus_tag="VGN19_13810"
                     /inference="COORDINATES: protein motif:HMM:NF042772.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6703 family protein"
                     /protein_id="HEV7197005.1"
                     /translation="MPKSKRHPARRPQQRTARRPHTPRPTAARAPQPAQSEFRRRLER
                     ASAPPLLAMHRLHRLVIPFVLAAFLVVGLWLPWRIAAVLVLFDAVFVAWLLALSWPLL
                     GTLGRVLRVATVIALVLAATLRMAGVY"
     gene            3074..3532
                     /locus_tag="VGN19_13815"
     CDS             3074..3532
                     /locus_tag="VGN19_13815"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEV7197006.1"
                     /translation="MKFADRSEAGRALAPLVASAVAAYPETEACGPPLVLGVDPGGIP
                     VAVAVAAALGVAMTALPVARDDSGVTVELPLDVSDRLVVVVDDGVETGTAAQAIGRAV
                     RAGGAAYSVLAVPVCPREAEAVLALRFDQVVAVVRPLVRRDLHWHYVDLA"
     gene            3661..5043
                     /locus_tag="VGN19_13820"
     CDS             3661..5043
                     /locus_tag="VGN19_13820"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012866380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEV7197007.1"
                     /translation="MAQDRIDAVVNLCKRRGFVFPCSEIYGGTRSAWDYGPLGVELKE
                     NVRRQWWRAMVQTRDDVVGLDSAVILAPQVWEASGHLDAFVDPLTECLHCHHRFREDQ
                     LIEAYENKKGRAPENGLADITCPHCGTKGQFTPSRPFNGLLSTHLGPVQDDSSLHYLR
                     PETAQGIFINYANVAGTARKKPPFGIAQVGKSFRNEITPGNFIFRTREFEQMEMEFFI
                     EPTTDEQWFDYWLQTRWDWYLDLGLSPENLRRYEHPAEKLSHYSKRTVDIEYRFRFGG
                     SEFAELEGVANRTDFDLKTHSAHSGVDLSYFDQESGERWFPYVIEPAAGLTRAVLAFL
                     LEAYDEDEAPNAKGGVDKRTVMRFDKRLAPVKVAVLPLSRNADLTPKAKDLAAELRQR
                     WNVEFDDAGAIGRRYRRQDEIGTPYAITVDFDTLEDQAVTVRDRDTMAQERIGLDAVT
                     EWLAARLPTG"
     gene            5148..6110
                     /locus_tag="VGN19_13825"
     CDS             5148..6110
                     /locus_tag="VGN19_13825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018173681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7197008.1"
                     /translation="MNLNHNTESGTAPAIELRSLHRSYGSTHAVKGIDLTVSRGEIVA
                     LLGPNGAGKSTTIDMALGLTRPDSGTVTLFGETAHLAVTRGSVGAMLQSGGLIENLSV
                     RELLAMMGSLYPNPRPVDDVLAVAGLQDVAGKRAAKLSGGQTQRVRFGIAMVSNPDLM
                     VLDEPTASLDVLARHDFWRTMRAFAGTGKTVLFATHYLEEADEFADRIVLMAGGRIVA
                     DGSATQIKSVVNVRTIRATLPSTDRGALLALPGVTAADRRGESVVLTCHDSDAALRAL
                     LVTFPDARDVEVRGAGLDEAFLQITGDGDTNEVDDITDRQEAAR"
     gene            6107..6856
                     /locus_tag="VGN19_13830"
     CDS             6107..6856
                     /locus_tag="VGN19_13830"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7197009.1"
                     /translation="MSTLTYARYETLRTLRNIRFTAFSLVFPLVLLVIVGGANRDEQN
                     FLGTGISFALYYLVGMISWGAMMSVLSGGARIAPERQLGWVRQLRLTPLSPSGYLGTK
                     VATGYLLALLTVAVLSVVAILGLGVRMPVEGWVRMLALVLIGLIPFAAMGVWFGHVLS
                     SESIGPVMGGTSALFALLGGAWGPITGSSGLVHNISEFIPSYWLVQAGQSAFTGQWWP
                     AKGWLVVGTWSVVMVFLARRSYLRDGERVAA"
     gene            6892..8196
                     /locus_tag="VGN19_13835"
     CDS             6892..8196
                     /locus_tag="VGN19_13835"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEV7197010.1"
                     /translation="MADPRVHEGAEGVDSDPASAWDGWRHGWGVLFAAIWLVFLVPTA
                     LDAWDRNPDLLVRIAGGALLAAFVVTYLFCIITPFGVRRSGRFWLVPLLLFSLSLVWL
                     PLAGESALSTWVFVAVAAHATLSARQAIAASALLILVSAALSLWVPGWNTDAGYPISI
                     LAASMAMFGVVRMAQLNRALYASQQEQARLAVLEERERFGRDLHDILGHSLTVIVVKS
                     ELAGKLADRDPDRARAEIADIERLAREALADVRSTAAGVREVTLVGELASARTALVAA
                     GIEPDLPSAVDDVPGELRELYGYVVREAVTNVVRHSGASRCLIRVERDGIEVRDDGRG
                     GAARGADDNSRTIGSGLIGLGRRVEEVGLHFEAGPAPDGGFRVAASTLPARAMDAIGA
                     PHVVPPESLAGAPPQRAATTRSCPAPGARAELAGSAEQRAGT"
     gene            8193..8798
                     /locus_tag="VGN19_13840"
     CDS             8193..8798
                     /locus_tag="VGN19_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEV7197011.1"
                     /translation="MIRVLLADDQHLVRGALAALLSMESDIEIAAEVGRGDEVVDAVR
                     DKGVDVAVLDIEMPGLDGIAVTAILREQVPSCRVLVVTTFGRPGYLRRAMAAGASGFM
                     VKDSPAERLAQAIRRIHSGLRVVDPSLAAESLAAGDSPLTERERDVLVAARDGGTVAD
                     IARVLSLSEGTVRNYLSAAITKTRARTRAEAARIATEHGWL"
BASE COUNT         1324 a         3088 c         3184 g         1434 t
ORIGIN      
        1 gtcgtcagcg tcgaccagtg gggcgacatc acctcggcgc tgggcgggga gtgcgcccag
       61 gtcaccacga tcctggcgtc ctcctcggtc gacccgcata cctacgaacc cactacgggc
      121 gacctcgccg agttcagcgg agccaggctc gtggtgatca atggagcggg gtacgacacc
      181 tgggccagca aggccgtcgc cacgttgagc cctaccccgg ccgtggtcga cggcggcgcc
      241 gtggtcggcg tggcatcggg ggccaacccg cacctctggt acaacccgtc gtacgtctac
      301 cggatcgccg cggcgatcac agcggcgctg acggcggcgc agcccggtgc ggccccgtac
      361 ttcgagcagc aggcagcggc ctggcgtact tccatgaagg cgtacgacga gcagatcgcc
      421 gcgatacggg ccgccgccgc ggggcggacg tacggcgcaa ctgagggcgt cttcgactac
      481 atggcggccg ccgtcgggct gcgcaacctc accccgcggg gctggcagaa cgcggcggcg
      541 aacgacagcg acccggcgcc gggggatgtc ctggggttcg acaacgcgtt gaacagcaag
      601 gagatgtcgg tgctcatcta caacacccag accgagggtc cgctgcccgc gcaggtggcg
      661 gcaaccgccg tgtcggccgg cgtccccgtc gtggaagtga cagagaccgt ggccgccggc
      721 agcacgtcgt tcctgcagtg gcagctctcg caactcaagt cgctggccgc ggcattgggg
      781 gtgcacggat catgaccgaa ccgcagccca cggcccggct ccgcgacgtg tcggtcgctc
      841 gaggcgggcg cacggtgtgg aacgagggca gcttcgacat cgcacccggc gcggtggtcg
      901 gcgtgatcgg ccccaacggc tcgggcaaga cgacgctgct caaggtgctg ctgggcctgc
      961 tgcctgtggc gtccgggacc gtgcaggtgc tcgggagcag cccacagcgg ggcaaccccg
     1021 cgatcggcta cgtaccgcag aactacaccg cgaccacagg tgaggcggta cgcgcccgcg
     1081 acctcgtcgg gctcggtatc tccgggtccc gttggggggc aggacggctc tccagcgccg
     1141 accgcgacaa ggtgacgagg tcgctggccg cggtgtcggc gttggacctg gccgaccggc
     1201 ggatgtccca gctctccggc gggcagcagc agcgggtcgc gatcgcgcag gcactcgtcg
     1261 atgaccccgc gctgctgctg ctcgacgagc cgttggccaa cctcgacgta cgcaaccagc
     1321 gcgagatcgt cggactgctg gctgacctca acggggaacg cggagtcacc gtcctggtcg
     1381 tcgcgcacga cctcaacccg ctgctgtctg cgctgaccgg ggcgatctac ctgctcgacg
     1441 gccacgccca ctacgacggc ctggacgacg tcgtcaactc cgagctgctc agtcatctct
     1501 acgggaccgc catcaaggtc gtacgaaccc cgcagggcga cctgttcacg aggaccgcgt
     1561 gaacacccac ggcctgctgg ccgagatcac gttccagtcc aactgggtcc aggtgctgca
     1621 ggcgccgttc atgcgcaacg ccatcatcgg cggcagcatc gtggctctgg tgtccgggat
     1681 catcggctac ttcgtcatcg tccggagctc ctcgttcgcg acgcatgcat tggcccacat
     1741 cgggtttccc ggcgcgaccg gagccgtgct ggtcggtgct ccggtgaccc tcgggctcgc
     1801 ggtgttctgc gtcgccgggg cgctggcgat cggagccctg ggacgccgag catcggagcg
     1861 ggacgtcgcg acgggcacga tcctggcatt cgccaccggg ctcggcatca tgttcgcctc
     1921 cctcgccacc cgcaacacga gcaccgtcac gaacgtgctg ttcggcaacc tgctggccat
     1981 cacctccgac cagctgtggg tattcgcggc cttcgcggtg gtgatcgccc tcgccatcgc
     2041 gtacgccttc cggccgttgc tcttcgccag catcgacgtc gaggtggccc aggcacgtgg
     2101 ggtcccggta cgcggccttg gcatcgtgtt catggtgctg ctcgcactgg tgatcacgat
     2161 ggccgtgcag gtggtcggca cgctgctgct cttcgccctg gtcgtcaccc cggcagccac
     2221 cgcgatcgcg tggaccgcgc gccctgggta cgccatcgcc gcctccgccg ggatcgcgct
     2281 ggtctcggtg tggctcgggc tcgtgctcgc ggtgatgttc gacctgccgc cgagcttctt
     2341 catcgtgacc atcgccacga tgatctggct cgcgacgtgg ctgctgtcac gccgatcagg
     2401 acaggacgcg atccaccgcg acgcgcacgg cgatcaccac cacaccggtc acgagccctc
     2461 gctgaccgcc tgacctctcg ggcccgggcc gtgcccgcac gatgcggcgc tgcggtcagt
     2521 acacgccggc catccgcagg gtcgccgcca gcaccagggc aatgaccgtg gccacccgca
     2581 gcacccggcc cagggtgccc agcagaggcc acgacagcgc cagcagccag gccacgaaca
     2641 cggcatcgaa caggacgagc accgctgcga tgcgccatgg cagccagagc ccgacgacga
     2701 ggaaggccgc cagcacgaac gggatgacca atcggtgcag gcggtgcatc gccagcagcg
     2761 gtggcgcact cgctcgttcc agccggcgtc ggaactcgct ctgggcgggc tgcggagccc
     2821 gcgctgccgt cggccgcggc gtgtgcgggc gtctggccgt acgctgctgc ggccggcggg
     2881 ccgggtggcg cttgctcttg ggcacgtcgg tccttccggg cgacaggtgg ggacagcggt
     2941 cggtgtgatc ggatcggtct gtcggtgacg ccgcgccctg tgggccaggc cgggtcgggc
     3001 atcatcgtcg cacccacccg caggccggtg ccacgaggct gctggtgagg gcggctggga
     3061 gaggacgcgc gcgatgaagt tcgccgaccg gtcggaggca gggcgagcgc tcgcgccgct
     3121 cgtcgcgtcg gccgtggctg cgtaccccga aaccgaggca tgcggtccac ccctggtgct
     3181 cggtgtcgat ccgggcggca tcccggtggc ggtcgcggtg gccgcagctc tcggggtagc
     3241 gatgaccgcg ctgccggtgg cccgggacga ctccggggtc accgtggagc tgcccctgga
     3301 cgtctccgac cgacttgtgg tcgtcgtgga cgacggcgtc gagaccggca ccgcggcgca
     3361 ggcgatcggt cgggccgtac gcgccggtgg ggcggcgtac agcgtgctcg ccgtcccggt
     3421 ctgcccgcgg gaggccgaag cggtgctggc gctgcgcttc gaccaggtcg tcgccgtcgt
     3481 gcgtcctctg gtacgccggg acctgcactg gcactacgtc gacctcgcct gacagcccgc
     3541 cggcctctcg cctcccgcgg tccggccctg ggggagggcg gctgcgtggg agagcggcag
     3601 tcagcagcag gtaccgtgag cccgcaccca ctcgccgaca ccccagccgg acggagcccc
     3661 atggcccagg accgcatcga cgccgtcgtc aacctctgca agcgtcgggg gttcgtgttc
     3721 ccctgcagcg agatctacgg gggcacccgg tcggcgtggg actacggccc gctgggggtg
     3781 gagctgaagg agaacgtccg ccggcagtgg tggcgtgcca tggtgcagac ccgcgacgac
     3841 gtggtgggcc tggactccgc ggtcatcctg gcgccccagg tctgggaggc ctccggtcac
     3901 ctcgacgcct tcgtcgaccc gctgacggag tgcctgcact gccatcaccg gttccgtgag
     3961 gatcagctga tcgaggcgta cgagaacaag aagggccgcg cgcccgagaa tggcctggcc
     4021 gacatcacgt gcccgcactg cggcaccaag ggccagttca ccccgtctcg ccccttcaac
     4081 gggctgctct ccactcacct cggacccgtg caggatgact catcgctgca ctacctcaga
     4141 cccgagacgg cgcaagggat cttcatcaac tacgccaacg tcgcgggcac ggctcgtaag
     4201 aagcccccct tcggcatcgc gcaggtgggc aagagctttc gcaacgagat caccccgggc
     4261 aacttcatct tccgcacccg cgagttcgag cagatggaga tggagttctt catcgagccg
     4321 accacggacg agcagtggtt cgattactgg ctgcagacgc ggtgggactg gtacctcgac
     4381 ctcgggctgt cgccggagaa cctgcgcagg tacgagcacc cggcggagaa gctgtcccac
     4441 tactccaagc gcaccgtgga catcgagtac cggttccgct tcggcggctc ggagttcgcc
     4501 gagctggagg gagtcgcgaa ccgtaccgac ttcgacctca agacccactc ggcccactcc
     4561 ggcgtggacc tgtcctactt cgaccaggag tccggggagc gctggttccc ctatgtcatc
     4621 gagccggcag cggggctgac ccgggcagtc ctcgcgttct tgctggaggc gtacgacgag
     4681 gacgaggcac ccaacgccaa gggcggcgtc gacaagcgca ccgtgatgcg cttcgacaag
     4741 cggctggccc cggtcaaggt ggccgtgctc ccgttgtccc gcaacgccga tctgaccccc
     4801 aaggccaagg acctggccgc ggagctgcgg cagcgctgga acgtggagtt cgacgacgcg
     4861 ggcgccatcg ggcggcgcta ccgccgccag gacgagatcg gcacgccgta cgccatcacg
     4921 gtcgacttcg acaccctcga ggaccaggca gtgacggtgc gggaccgcga cacgatggcc
     4981 caggaacgga tcggcctcga cgccgtcacc gaatggctcg ccgcccgcct ccccaccgga
     5041 tgaagtcccc tgagcggccg gctcgaatcc accggtgaca cctgtcacgg cagagtcggg
     5101 atgtccagca ctgcccgcaa tctcagccag cggccaggct ggatgtcatg aacctgaatc
     5161 acaatacgga gtcgggtacg gcgccggcca tcgagcttcg atcgctgcac cgcagctacg
     5221 gcagcaccca tgccgtcaag ggcatcgacc tgaccgtgtc ccgaggggag atcgtcgcgc
     5281 tgctcgggcc taacggcgcc ggcaagtcga cgacgatcga catggcgctg gggctgaccc
     5341 gacccgacag cggcacagtg accctgttcg gcgaaacagc gcacctggcg gtcacccggg
     5401 gttcggtcgg cgcgatgctg cagtcaggtg gtctgatcga gaacctctcc gtgcgcgaac
     5461 tgctcgcgat gatgggctcg ctgtacccga acccgcgccc tgttgacgac gtgctcgctg
     5521 tcgcaggtct gcaggacgtc gccggtaagc gggctgcaaa gctgtccggc ggccagacgc
     5581 agcgcgtccg cttcgggatt gcgatggtct cgaacccgga cctgatggtc ctggacgagc
     5641 cgactgcgtc cctcgacgtc ctggcacgac atgacttctg gcggacgatg cgtgccttcg
     5701 cagggactgg gaaaacagtg ctcttcgcta cccactacct ggaggaggcc gacgagttcg
     5761 ccgaccgcat cgtgctgatg gcgggcggca ggatcgtcgc tgacggctcg gcaactcaga
     5821 tcaagtcggt ggtgaacgta cgaaccatcc gcgccacttt gccgtcgacg gaccgcggcg
     5881 cgctgctggc cctgcccggc gtcaccgcgg cggatcggcg cggcgagtcg gtggtactca
     5941 cctgtcacga ctcggatgca gcgctgcgcg cgctgctggt gaccttcccc gacgcccgtg
     6001 acgtcgaggt ccgtggcgcg ggcctcgacg aggcgttcct gcagatcacc ggcgacggtg
     6061 acaccaatga agtcgacgac atcacggacc ggcaggaggc agctcgatga gcactctcac
     6121 ctatgcaagg tacgaaaccc tccggaccct gcggaacatc cgcttcaccg cgttctcgct
     6181 cgtgttcccg ctggtgctgc tcgtcatcgt gggcggagcc aacagggacg agcagaactt
     6241 cctggggacc ggcatctcgt tcgctttgta ctatctggtc gggatgatct cgtggggcgc
     6301 gatgatgtcg gtcctgtcgg gcggtgcacg gatcgccccc gagcgccagc tcggctgggt
     6361 ccggcagctg aggctgacgc cgctctcccc ctccggctac ctcggcacga aggtggccac
     6421 ggggtatctg ttggcattgc tgacagtcgc agtcctcagc gtcgtggcca tcctcgggct
     6481 cggggtgcgc atgccggtcg agggttgggt gcgcatgctc gccctggtcc tgatcgggct
     6541 aatcccgttc gccgcgatgg gtgtctggtt cggccacgtg ctgtcgagcg aatcgatcgg
     6601 acccgtcatg ggcgggacgt ccgccctgtt cgcgctgctc ggcggcgcct ggggacccat
     6661 caccggttct tccgggctgg tgcacaacat ctccgagttc atcccgtcgt actggctggt
     6721 gcaggccgga cagtccgcct tcaccggcca gtggtggcct gcgaaggggt ggctggtggt
     6781 gggcacctgg agcgtggtca tggtgttcct ggcccgccgc tcgtacctgc gggacggtga
     6841 gcgagttgcg gcatgagcga cgaggccggc ggctgcggct accgtggacc cgtggccgat
     6901 ccacgtgttc acgagggggc tgagggcgtg gactctgacc ccgcctccgc gtgggatggc
     6961 tggcgtcacg ggtggggtgt gctgttcgct gcgatctggc tcgtcttcct ggtgccgacg
     7021 gccctcgatg cctgggaccg caaccccgac ctgctggtac ggatagccgg tggagccctg
     7081 ttggcggcgt tcgtggtcac gtacctgttc tgcatcatca ccccgttcgg cgtacggcgc
     7141 agcggcaggt tctggctggt cccgctgctc ctgttctcgc tcagcctcgt gtggctcccg
     7201 ctggccggtg agtcggctct gagcacgtgg gtgttcgttg cagtggcggc acacgcaacc
     7261 ttgagcgctc ggcaggcgat cgcagcgtcc gcgctcttga tcctggtctc tgcggcgctg
     7321 tcgttgtggg ttccgggctg gaacaccgac gccggatatc cgatctcgat cctcgccgca
     7381 tccatggcga tgttcggtgt ggtcaggatg gcccagctca accgcgcgct ctacgcctct
     7441 cagcaggagc aggcccgtct ggcggtactg gaggagcggg agcgcttcgg ccgcgacctg
     7501 cacgacatcc tcggtcacag cctgaccgtg atcgtggtca agtccgagct cgccggcaag
     7561 ctggccgacc gcgaccccga ccgggctcgt gctgagatcg ccgacatcga acggttggcg
     7621 cgagaggcgc tggcggacgt gcgtagcacc gccgcgggcg tacgagaagt gacgctcgtc
     7681 ggcgagctcg cctcggcccg cacggcgctg gtggcggccg ggatcgagcc tgacctgccg
     7741 agtgcagttg acgacgtgcc gggagagctg cgcgagctgt acggctacgt cgtgcgcgaa
     7801 gcggtcacga acgtggtgcg ccacagtggg gcatccagat gcctcatccg ggtcgagcgc
     7861 gatgggatcg aggtccgcga cgacggccgg ggcggggccg cccggggggc ggatgacaac
     7921 tcacgcacga tcgggtccgg gctgatcggc ctgggtcgac gggtggagga agtgggactg
     7981 cacttcgagg cgggtccagc gcccgacgga gggtttcggg ttgctgcctc gacgctgccg
     8041 gcgcgagcca tggatgccat cggggctccc cacgtcgtgc caccggagtc gctggccggc
     8101 gccccgccgc agcgagcggc aaccacgcgc agctgccccg cgccgggggc ccgggccgag
     8161 ctggccgggt ctgctgagca gcgagcgggc acgtgatccg ggttctgctt gccgatgacc
     8221 aacatctggt ccggggggcg ttggcagcgc tgctgtcgat ggagtccgac atcgagatcg
     8281 cggcggaggt ggggcgaggt gacgaggtcg tggacgccgt acgtgacaag ggcgtggacg
     8341 tcgctgtcct cgacatcgag atgccaggtc tggacgggat cgctgtgacc gccatccttc
     8401 gtgagcaggt gccgtcctgc agggtgctcg tggtcacgac gttcgggcgc cctgggtatc
     8461 ttcggcgtgc gatggcagcc ggtgcgagcg gcttcatggt caaggactcc ccggccgagc
     8521 gcctcgcgca ggcgatccgg cgcatccact ccggcttgcg ggtggtcgac ccgtcgttgg
     8581 ccgcggagtc actggcggcc ggcgacagcc cgctcaccga acgcgagcgc gatgtgctcg
     8641 tcgctgcccg cgacggtggc acggtcgccg acattgcccg ggtgctgtcg ctgtcggagg
     8701 ggaccgtacg caactacctg tccgcggcga tcaccaagac gcgagcccgc acccgggccg
     8761 aagcggcccg catcgccacc gagcacgggt ggctctgacg ccacagcctc tggtgctctg
     8821 ggatgaagcc cctactgact cgctgcgctc gtcagcgggg gccagcgagc cggtgcgcta
     8881 ggcgcaccgc gagcgcccca atacgcgaca gacatcggcg agtcagcggt agtcgcgggt
     8941 cggcaggatc cgctcctggt ggtccagctc ggtctgcagg acccgcagcg cggagtccga
     9001 gagccgcccg gcatcgcgcc atcgcagcag
//
LOCUS       DASYFY010000682         2074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1731432, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000682 DASYFY010000000
VERSION     DASYFY010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1731432"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..817)
                     /locus_tag="VGN19_13845"
     CDS             complement(<1..817)
                     /locus_tag="VGN19_13845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013602919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HEV7197012.1"
                     /translation="MRRLGLDRSRMRRALLGLVASAVMALGSLAVLPAGTAAAANPCG
                     PPVVNVIACENTQTGDPTSDWQITGSGSSTIQGFATSISVSPGDTVQFKINTPSKNYH
                     FDILRMGYYQGNGARKIAGGLKPSVALPQTQPACLNDPNPTGLIDCGNWGVSASWTVP
                     TTAVSGVYIAHLVRDDVTGASSHIVFIVRNDSSHSDILFQTDDETWQAYNTYGGNSLY
                     SCTVACPPGNPGGYKGAYKVSYNRPFHTALDDQGRSWLMYSEYPMIRWLESNGY"
     gene            complement(814..1809)
                     /locus_tag="VGN19_13850"
     CDS             complement(814..1809)
                     /locus_tag="VGN19_13850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019180081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7197013.1"
                     /translation="MSSLKGATVLVTGGAGTIGSTIVDELLRAGVSHVDVLDNLVRGR
                     VENLGWALASGRVSLVRGDLRDRDLVHDLTCGKDLVFHQAAIRITQCAEEPRLALEVL
                     VDGTFTVLEAAAEHGVDKLVFASSASVYGLAEEFPTGERHHHHNNDTFYGAAKSFNEG
                     MARSFRAMSGLDYVGLRYFNVYGPRMDVHGLYTEVLVRWMERIADGVPPLIFGDGQQT
                     MDFVFTRDIARANLLAAASEVREGIYNVASGTETSLLGLAEALLRAMDSDLSVEHGPD
                     RAVNGVTRRLADTRAAARDLGFHAEVGLEQGLRELVTWWQPQRAAVAAGRGVRVS"
     gene            complement(1806..>2074)
                     /locus_tag="VGN19_13855"
     CDS             complement(1806..>2074)
                     /locus_tag="VGN19_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010205760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197014.1"
                     /translation="NVNYRLGDMHAPALPEREALGAMAAEFASAITEERAPLTDGNAG
                     LRVLAVLEAASESQRRAGAMAPVGMPMGRSLAAATVGVGWGGAW"
BASE COUNT          319 a          726 c          703 g          326 t
ORIGIN      
        1 cgtatccgtt cgactcgagc cagcgaatca tcgggtactc gctgtacatc agccagcttc
       61 ggccttggtc gtcgagggca gtgtggaagg gccggttgta agagaccttg taggcgccct
      121 tatagccgcc cgggttgccc ggagggcagg ccaccgtgca actgtagagg ctgttgccgc
      181 cgtaggtgtt gtaggcctgc caggtctcgt cgtccgtctg gaacaggatg tcggagtggc
      241 tggagtcgtt gcgcacgatg aacacgatgt ggctcgaagc gccggtgacg tcatcgcgca
      301 ccaggtgcgc gatgtagaca cccgacaccg cagtcgtcgg cacggtccag gatgccgaca
      361 caccccagtt cccgcagtcg atcagccccg tggggttcgg gtcgttgagg cacgcgggtt
      421 gggtctgcgg cagtgcgacg ctcggcttga gccccccagc gatcttgcgt gcaccgttgc
      481 cctggtagta ccccatgcga aggatgtcga agtggtagtt cttcgacggg gtgttgatct
      541 tgaactggac ggtgtccccg gggctcacgc tgatcgacgt cgcgaagccc tggatggtcg
      601 acgacccgga gccggtgatc tgccagtcac tggtcgggtc tcccgtctga gtgttctcac
      661 aggcgatcac gttgacgacc ggcggaccgc aggggttcgc tgcggccgcc gtgcctgccg
      721 gcaggactgc gagcgagccc agcgccatca ccgcgctcgc cacgaggccg agcagggcgc
      781 ggcgcatccg cgagcggtcc aggccgagtc gcctcatgac acacgcactc ccctgcccgc
      841 ggccacagct gcacgctggg gctgccacca cgtgaccagc tcacgtagtc cctgctcgag
      901 accgacctcg gcgtggaagc cgaggtccct cgcggccgcc cgggtgtcgg ccagacggcg
      961 cgtgacgccg ttgaccgcgc gatctgggcc gtgttcgacg gacagatcgg agtccatcgc
     1021 gcgcagcagc gcctctgcca gcccgagcag gctggtctcg gtgccgctgg cgacgttgta
     1081 gatcccctcg cgcacctcgc tcgccgccgc aagcaggttc gcccgcgcga tgtcgcgcgt
     1141 gaagacgaag tccatcgtct gctgcccgtc accgaagatg agcggcggca cgccgtcggc
     1201 gatccgctcc atccagcgga cgaggacctc ggtgtacagg ccgtgcacgt ccatgcgggg
     1261 cccgtagacg ttgaagtacc gcaggcccac gtagtcgaga ccggacatgg cccggaagct
     1321 gcgcgccatg ccctcgttga aggacttcgc ggcaccgtag aaggtgtcgt tgttgtggtg
     1381 gtggtgccgc tcccccgtcg gaaactcctc ggcgaggcca tagaccgacg ccgacgaggc
     1441 gaagaccagc ttgtcgacgc catgctcggc cgccgcctcc aggacggtga aggtcccgtc
     1501 gacgagcacc tcgagcgcaa ggcggggctc ctccgcacac tgcgtgatcc ggattgccgc
     1561 ctggtggaag acgaggtcct tgccgcacgt caggtcgtgg acgaggtcac ggtcgcgcag
     1621 gtcgccccgg accaggctga cccggccgga cgcgagggcc cagccgaggt tctcgacccg
     1681 tccccgcacc aggttgtcga ggacgtcgac atgggagacg cctgcccgca acagctcgtc
     1741 gacgatcgtc gagccgatcg tccccgcgcc cccggtgacc agcacggtcg cccccttcag
     1801 ggagctcacc acgcacctcc ccagccgacg cccaccgtgg ccgcggcgag ggaccggccc
     1861 atcggcatac ccaccggggc catcgcgccc gcacggcgtt ggctctccga ggcggcctcg
     1921 agcaccgcga ggacccgcag ccccgcattg ccgtcggtga gcggagcgcg ctcctccgtg
     1981 atggccgacg cgaactccgc cgccatcgca cccagcgcct cccgctccgg cagcgccggc
     2041 gcatgcatgt cgccgagccg gtagttgacg ttga
//
LOCUS       DASYFY010000683         1568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1311186, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000683 DASYFY010000000
VERSION     DASYFY010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1311186"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /gene="paaD"
                     /locus_tag="VGN19_13860"
     CDS             complement(<1..440)
                     /gene="paaD"
                     /locus_tag="VGN19_13860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaD"
                     /protein_id="HEV7197015.1"
                     /translation="MTGTVLTAVAVKDPVAQAIADIPDPEVPVVSIEDLGILRGVAID
                     VAARHVRVTITPTYSGCPAMEVIGAHIRHVAARSGYTSEVVTQLSPAWTTDWLSDRGR
                     ARLREFGIAPPAAKIAGAVGVSLHRRQVDCPQCGSTDTEELARFG"
     gene            complement(437..1213)
                     /gene="paaC"
                     /locus_tag="VGN19_13865"
     CDS             complement(437..1213)
                     /gene="paaC"
                     /locus_tag="VGN19_13865"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HEV7197016.1"
                     /translation="MAQVTVSADPAVAPYVLGLADDALIYAQRLGEWISRGPQIEEDM
                     ALANIGLDLLGQARVLLTRAGELDGTGRTEDELAYFRDEREFRNVHLVEQERHGFGFE
                     MARLLWFASYQWELYASLRTSSDPVVCAVAEKALKEVDYHRDHATQWVLRLGDGTQES
                     HQRMQQGLQDVQPYVSELFEDDASSAIAAQCGAGVLPSSLQERAAGYVEGVLAQATLE
                     APAESRWRSRGGRDGVHSRPMGSLLAELQHIARSHPGATW"
     gene            complement(1213..1509)
                     /gene="paaB"
                     /locus_tag="VGN19_13870"
     CDS             complement(1213..1509)
                     /gene="paaB"
                     /locus_tag="VGN19_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006590795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaB"
                     /protein_id="HEV7197017.1"
                     /translation="MATDERATWPLFEVFVRGKRGLSHVHVGSLHAPDPTMALRNARD
                     VYTRRQEGVSLWVVRASDITASSPDERDSFFDPAGDKVYRHPTFYDVPADVEYL"
BASE COUNT          242 a          542 c          549 g          235 t
ORIGIN      
        1 ccgaaccggg cgagctcctc ggtgtcggtg ctgccgcact gggggcagtc cacctggcga
       61 cggtgaagcg aaacccccac ggcgccagcg attttggcgg ctggcggcgc gatgccgaac
      121 tcccgaagtc gggcgcgtcc acggtcgctg agccagtcgg tcgtccatgc cgggctcagc
      181 tgggtcacga cctcgctggt gtacccggac cgcgcggcaa cgtggcgaat gtgagccccg
      241 atgacctcca tcgcggggca ccccgagtag gtaggcgtga tggtgacgcg cacgtggcgc
      301 gcggctacgt cgatggcaac accacgcagg atcccgaggt cctcgatgga gacgactggt
      361 acttcgggat ccgggatgtc cgcaatcgcc tgcgccacag ggtccttcac agcgacggcc
      421 gtgagcacgg tgccggtcac cacgtcgctc ccgggtgcga tcgggcgatg tgctgcagct
      481 ccgcgagcag agagcccatc ggtcgcgagt gcactccgtc ccgcccccct cgcgagcgcc
      541 accgcgactc ggcaggcgcc tccaacgtgg cctgggcgag caccccttcg acatagccgg
      601 cggcccgctc ttgcagggac gagggcagca ccccggcgcc gcactgagcg gcgatggcgg
      661 acgacgcgtc gtcctcgaac agctcgctca cgtagggctg cacgtcctgg agaccctgct
      721 gcatccgctg atgggactcc tgcgtgccgt ccccaagtcg cagcacccac tgggtggcat
      781 ggtcacggtg gtagtcgacc tccttgagcg ccttctccgc caccgcgcag accaccgggt
      841 cggacgaggt tcgcagggag gcatacagct cccactggta gctcgcgaac cacagcaggc
      901 gagccatctc gaaaccgaag ccgtgccgct cctgctcgac gaggtggacg ttgcggaact
      961 cccgctcgtc ccggaagtag gccagctcgt cctcggtgcg gccagtgccg tcgagctcgc
     1021 ccgccctggt cagcaggacc cgggcctggc cgagcaggtc gagcccgatg ttggccagcg
     1081 ccatgtcctc ctcgatctgc ggaccccgcg agatccattc gccgagccgt tgggcgtaga
     1141 tcagcgcatc gtcggccagg ccgaggacgt agggcgcgac tgccgggtcc gccgacacgg
     1201 tgacctgggc catcagaggt actccacgtc cgctggcacg tcgtagaacg tcggatggcg
     1261 gtacaccttg tcgccggccg ggtcgaagaa cgagtcgcgt tcgtccggtg agctggcggt
     1321 gatgtcggag gcacgcacca cccacagcga gacgccctcc tggcgtcggg tgtagacgtc
     1381 gcgggcgttg cgcagggcca tagtcgggtc cggcgcgtgc agggagccga catgcacgtg
     1441 ggacagtcca cgcttgccgc ggacgaacac ctcgaaaagg ggccaagtgg cccgctcgtc
     1501 agtggccagc gcgtgagtgg ccagcgcgtc agtggcccgg tcgtcagtgg ctcggtcggc
     1561 ggtggtcc
//
LOCUS       DASYFY010000684         5136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1102119, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000684 DASYFY010000000
VERSION     DASYFY010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5136
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102119"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1664
                     /locus_tag="VGN19_13875"
     CDS             <1..1664
                     /locus_tag="VGN19_13875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GTPase domain-containing protein"
                     /protein_id="HEV7197018.1"
                     /translation="TLRDEVEAATLPLETPEAATGRVARTTLLNQLDDYVLPRLRSLD
                     APLLAVVGGSTGAGKSTLVNSIVDAEVSRSGVLRPTTTTPVLVHHPQDRHWFLDDRIL
                     PGLARVSGPIHDRHGVGSLRLVSSGSLPAGMALLDAPDIDSVISANRALATQLLAAAD
                     LWLFVTTAARYADAVPWDLLREASERGTAVAIVLDRVPPEAMTDIRSHLAGMLREQAL
                     STAPIFGIPESTLTSVGRLPETEVARLKSWLTALASDSRARTVIVRQTLDGALGALDS
                     RAVALAVASREQAAAAQALAQVPDSAYAHALRQVEQGMGDGTLLRGEVLARWQEYVGT
                     GEFFKQVESAVSKVRDRLTAAVKGAAPPAGDLGEALQSGVVALVSAQAGGAAATVART
                     WRQLPGGEPVLDGHPELAKAAPDLDPRIERLVRDWQGEVLQLVRNEGKDRRTTARIAA
                     YGLNGIGVILMLVVFAHTGGLLGAEVGIAGGTAVLAQKVLEAIFGDQAVRDMAATARK
                     RLLERVQELYAAEQARYHVALAGVGDISSQARRLASAAAAVKAVR"
     gene            1661..3349
                     /locus_tag="VGN19_13880"
     CDS             1661..3349
                     /locus_tag="VGN19_13880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEV7197019.1"
                     /translation="MTPVKMGNAQVKGISAEELAVRSKALADALGSGAAQLKTAPAAG
                     AREVIAKVTERTAITGGHTVVALAGATGSGKSSLFNALVGSHVALVGTRRPTTSLPVA
                     AVWGDRSATELLDWLEVAERHHVGPSAAPTVGTAGRELGGLDGLVLLDLPDFDSRVTS
                     HRDEAERVLALVDVFIWVTDPQKYADARLHDDHLRVLSTHDAVTIVLLNQADRLTTEE
                     LARVREDLVRLAQEDGIGAVRVLATSAKTGAGVADLRLRLATAVAAQNAARQRLAADI
                     KAAAAVLRPAVAEREPTVSAQADAELVEALARAAGVPTVVAAVERDYRQQAWGRTGWP
                     FTRWVRALRPDPMKRLRLEGGDAVDTKLAVTAADVRSVLGRSSLPPPSPAARSAVELA
                     TRRVGDEAAAGLPHLWADAVADAATPTGPDLADALDQAVVGTSLKMRPPLWWRVFGIA
                     QLALAGVAAMGLVWLMVMVVLGWLALSPIGTPRLGPFPYPSLMLVGGLAIGLGLASLS
                     RTLARSAAQRRGEWVREQLLAAISAVAVARITNPVREVLTRHRATRVALDRASF"
     gene            3528..4094
                     /locus_tag="VGN19_13885"
     CDS             3528..4094
                     /locus_tag="VGN19_13885"
                     /inference="COORDINATES: protein motif:HMM:NF012651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEV7197020.1"
                     /translation="MNEIYSTVQGRVVAPPESRVTRGGVPFTAFRMASTVRRPNPQTR
                     EYEDGPTSFFNVTAFRTLGANVGNSLKKGDAVVVYGRMRVNQWMRQDNTPATSVEIDA
                     YTVGHDLTWGTTELVRVSRAQMDQSDRLADDAVQGVHAELEQALEAVEADSDDYVVVQ
                     GHREQSTTESTQSTEQDQEAERSQLATV"
     gene            4150..>5136
                     /locus_tag="VGN19_13890"
     CDS             4150..>5136
                     /locus_tag="VGN19_13890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7197021.1"
                     /translation="MPEFIYVMSKARKAHGDKVILDDVTLSFLPGAKIGVVGPNGAGK
                     SSVLKIMAGLDQPSNGEARLTPGYSVGILMQEPELNEEKTVLGNVEEGAGEIKAKVDR
                     YNAISAEMAEPDADFDALMEEMGKLQEAIDAADAWDLDSQLEQAMDALRCPPPDADVT
                     VLSGGERRRVALCKLLLQKPDLLLLDEPTNHLDAESVLWLEQHLASYHGAVVAVTHDR
                     YFMDNVAGWILELDRGRAYPYEGNYSTYLEKKSARLEVQGKKDAKLAKRLSEELQWVR
                     SNAKARQTKSKARLARYEEMAAEADRTRKLDFDEIQIPPGPRLGSKVIEVKNL"
BASE COUNT          797 a         1747 c         1825 g          767 t
ORIGIN      
        1 cgacccttcg ggacgaggtc gaggcggcca cgctgcctct tgaaaccccc gaggcggcga
       61 ccggccgagt cgctcggacg acgctgctca accagctgga cgactatgtc ctgccacggt
      121 tgcgttcgct ggacgcgccc ctgctcgccg tcgtcggagg ctcgacgggg gcgggcaagt
      181 cgacgctggt caactccatc gtcgacgccg aggtgagccg ctccggggtg ctgcgaccca
      241 cgaccacgac gcccgtgctg gtgcatcacc cgcaagaccg tcactggttc ctcgatgacc
      301 gcatcctgcc tgggctggct cgcgtgagcg gccccatcca tgaccggcac ggggtcggct
      361 cgctgagact cgtgagctca gggtcgctac cggcgggcat ggccttgctc gacgcgcccg
      421 acatcgactc ggtgatcagt gcgaaccgag cgctcgcgac ccagctcctt gctgccgcgg
      481 acctgtggct gttcgtgacc accgctgcgc gatacgccga cgcggtgccg tgggacctgt
      541 tgcgcgaggc gtcggagcga ggcaccgcgg tcgcgatcgt gctggaccgt gtcccccctg
      601 aggcgatgac cgacattcgc agccacctgg ccggcatgct gcgcgagcag gcactgtcca
      661 cggccccgat ctttggcatt ccggagtcca ccctgacgtc agtcgggcgg ctgcccgaga
      721 ccgaggtggc gcggctcaag tcgtggctga ccgcactggc aagtgactcc cgcgcccgca
      781 ccgtcatcgt ccgccagacc ctggacggcg ccctcggtgc actcgacagc cgcgcggtgg
      841 cccttgcggt ggccagtcgc gagcaggcgg cggcagccca ggcgctcgcc caggtccctg
      901 actcggcata cgcgcatgcg ctgcggcagg tggagcaggg catgggcgac gggaccctcc
      961 tacgtggaga ggtgctggct cgctggcagg agtatgtcgg caccggcgag ttcttcaagc
     1021 aggtcgagtc ggcggtgtcc aaggttcgcg accgtctgac cgcagcggtc aagggtgccg
     1081 ctccacctgc cggcgacctc ggcgaggcac tgcagtccgg ggtggtggcc ctggtttcgg
     1141 cccaggccgg aggggctgcg gcaaccgtcg ctcgcacgtg gcgccagctg cccggcggtg
     1201 agccggtcct cgacgggcac cctgagctgg ccaaggccgc gccggatctg gatccgcgta
     1261 tcgagcgcct ggtgcgtgac tggcaaggtg aggttctcca gctcgtccgc aacgagggca
     1321 aggaccggcg gaccaccgcg cgcatcgcgg catacggcct caatgggatc ggcgtgatcc
     1381 tcatgctcgt ggttttcgcg cacaccgggg gcctgctggg ggccgaggtg ggcatcgccg
     1441 gcggcaccgc tgtgctggcc cagaaggtcc tggaagccat cttcggcgac caagccgtgc
     1501 gggacatggc ggccacggcc cgcaagcgac tactcgaacg agtgcaggag ctgtatgccg
     1561 cggagcaagc cagatatcac gtcgccctcg cgggtgtggg cgacatctcg agccaggcca
     1621 ggcgcctggc cagtgctgct gcagcagtga aggcggttcg atgactccag tcaagatggg
     1681 caacgcgcag gtcaagggga tcagcgccga ggagctcgcc gtgcgctcca aggcgctcgc
     1741 cgacgcattg ggatcgggcg cggcccagct gaagacggcc cccgcagccg gcgctcgcga
     1801 ggtgatcgcc aaggtgacgg aacggacggc catcaccggg ggccacacgg tggtcgccct
     1861 cgccggcgcc acgggatccg gcaagtcaag cctgttcaac gccctcgtgg gcagccacgt
     1921 cgccctggta gggacgcggc ggcccaccac gtcgctgccg gttgccgcgg tctggggcga
     1981 caggagcgcg accgagctcc tcgactggct ggaggtggct gagcgccacc acgtggggcc
     2041 gtcggctgct cctaccgtcg ggacagcggg ccgcgagctg ggtgggctcg acggactcgt
     2101 cctgctggac ctgccggact tcgactctcg ggtcacgtca catcgggacg aggcggagcg
     2161 tgtgctggcg ctcgtcgacg ttttcatctg ggtcaccgac ccgcagaagt atgccgacgc
     2221 gcggctgcac gacgaccatc tgcgggtcct gtccactcac gacgcggtga cgatcgtgct
     2281 gctcaaccag gcggaccggc tgaccaccga ggagctcgcg cgggtgcgtg aggacctcgt
     2341 ccggctggcc caggaggacg gcatcggtgc tgttcgggtg ctcgcgacct ccgcgaagac
     2401 cggggccggc gtggctgacc tgcggctacg gctggcaacc gcggtcgccg cccagaacgc
     2461 cgcgcgtcag cgactcgcgg ccgacatcaa ggccgcagcc gccgtcctgc ggcctgcggt
     2521 ggccgagcgc gagccgaccg tgtccgccca ggccgacgcc gagctggttg aggcactagc
     2581 tcgcgcggcg ggggtgccca cggtggtggc agcggtcgaa cgggactatc gccagcaggc
     2641 gtggggtcga accggctggc cgttcacccg ctgggtgcga gccttgcggc ccgacccgat
     2701 gaagcgtctt cggctggagg gcggggacgc ggtggacacc aagctggccg tcacggctgc
     2761 agacgttcgc agcgtgttgg gccgttcctc gttgccgcca ccgtctccgg ccgcccgctc
     2821 cgcggtcgag ctggccaccc gccgggtcgg tgacgaggcg gccgccgggc tcccgcacct
     2881 gtgggctgac gcggtggccg acgccgcgac gccgacgggg ccggatcttg ctgacgcgct
     2941 cgaccaggcg gtggtgggca cgtcgctcaa gatgcggccg cccctgtggt ggcgcgtgtt
     3001 cggtatcgcc cagctcgccc tggccggcgt cgcggcgatg ggactggtgt ggttgatggt
     3061 gatggtggtg ctgggctggc tcgcgttgtc gcccatcggg actccgcgac tgggtccatt
     3121 tccgtacccc tcgctgatgc tcgtcggagg gctcgccatc ggactaggcc tggcgtcctt
     3181 gagcaggacg ctggcccgtt ctgcggcgca gcgccgtggc gagtgggtcc gcgagcagct
     3241 gctggcggcc atctccgcgg tggcggtcgc gcggatcacc aacccggtgc gggaggtcct
     3301 cacgcggcac cgggccaccc gagtcgcgtt ggaccgggcg tccttctagg ggattcccat
     3361 ccaccacctg ccgctgttct cacgctgcca tcgcctacgc cgtccacaac tggacggcga
     3421 cgcgcgcggc ggtccacaag gcccggactc ctacctcgcg cctggctgcc ttgtcgccaa
     3481 accttggggc aacccaaatc ggggaccaag cagacaagga cacgaggatg aacgagatct
     3541 acagcactgt tcagggccgg gtggtcgccc cgccggagtc acgggtcacc cgcggcggag
     3601 tgccgttcac ggccttccgg atggcctcga ccgtgcgacg gcccaatccg cagacgcgtg
     3661 agtatgagga cgggccgacc agcttcttca acgtcaccgc ctttcggaca ctgggcgcca
     3721 atgtcggtaa ctcgctgaag aagggtgatg ccgtcgtggt ttacgggcgg atgagggtga
     3781 accagtggat gcggcaggac aacacgcccg caacgtcggt ggagatcgac gcctacaccg
     3841 tgggtcacga cctgacgtgg gggacgaccg agctggtccg cgtctcgcga gcccagatgg
     3901 accagagcga ccgactcgcc gacgatgccg tgcagggggt gcacgccgag ctcgaacagg
     3961 cgctggaggc ggtggaggca gactccgacg actacgtcgt ggtgcagggc cacagggagc
     4021 agtccaccac cgagtccacc cagtccaccg agcaagacca ggaggccgag cggtcacagc
     4081 tggcgaccgt ctgaggagag ggccagatcg gattcgggcg tggaggcagc ggcggctagc
     4141 cttgccccca tgcccgagtt catctacgtc atgtctaagg cccgcaaggc ccacggcgac
     4201 aaggtcatcc tcgatgacgt caccctctcg ttcctgcccg gagccaagat cggcgtggtt
     4261 ggaccgaacg gtgcgggcaa gtcctcggtg ctcaagatca tggccggctt ggaccagccc
     4321 tccaacggcg aggcgcgcct caccccgggc tactcggtcg ggatcctcat gcaggagccc
     4381 gagctcaacg aggagaagac cgttctcggc aatgtcgagg agggcgcggg cgagatcaag
     4441 gcgaaggtcg accgctacaa cgccatctcc gcagagatgg ccgagccgga tgccgacttc
     4501 gacgccttga tggaggagat gggcaagctc caagaggcca tcgacgccgc ggatgcctgg
     4561 gacctcgact cccagctcga gcaggccatg gacgcactgc gctgcccccc accggacgct
     4621 gacgtcaccg tgctctccgg tggagagcgc cgtcgggtcg cgctgtgcaa gctcctgctt
     4681 cagaagcccg acctgctgtt gctcgacgag cccaccaacc acctggacgc cgagtcggtc
     4741 ctgtggcttg agcagcacct cgccagctat cacggcgccg tggtggcggt gacccacgac
     4801 cggtacttca tggacaacgt cgccggctgg atcctcgagc tcgaccgtgg tcgggcctac
     4861 ccctacgagg gcaactactc cacctacctg gagaagaagt ccgcgcgcct cgaggtgcag
     4921 ggcaagaagg acgccaagct ggcgaagcgg ctctccgaag agctgcagtg ggttcggtcc
     4981 aacgccaagg cccgtcagac caagtccaag gcgaggctgg cccggtacga ggagatggcc
     5041 gctgaggccg accgcacccg caagctcgac ttcgacgaga tccagatccc gcctggcccc
     5101 cggctgggca gcaaggtgat cgaggtcaag aacctt
//
LOCUS       DASYFY010000685         3326 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1888665, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000685 DASYFY010000000
VERSION     DASYFY010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1888665"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /gene="tyrS"
                     /locus_tag="VGN19_13895"
     CDS             complement(<1..383)
                     /gene="tyrS"
                     /locus_tag="VGN19_13895"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEV7197022.1"
                     /translation="MTNILDELKWRGLVAQTTDESELRQALDDGPITAYCGFDPTAPS
                     LHFGNLVQLVVMRHLQRAGHRIICLVGGSTGLIGDPRPSAERVLKTKEQTADWVGRIQ
                     EQVRPFLDFEGENAAIMVNNLEWTAP"
     gene            complement(443..1105)
                     /locus_tag="VGN19_13900"
     CDS             complement(443..1105)
                     /locus_tag="VGN19_13900"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEV7197023.1"
                     /translation="MAGQQDQAAAELSPTALPREFFAEDVLDVAPSLLGCTLTHAGVT
                     IRLTEVEAYAGVNDPGSHAFRGPTPRTEVMFGAAGHLYVYFTYGMHWCANVVCGATGE
                     ASAVLLRAGEVVGGGEVASTRRVGIARRDWARGPARLTTTLALSGADSGADACQPGSP
                     VLFGARSRPVRLSDIRTGPRVGVSGAGGDAAAYPWRFWLDGEPTVSAYRPAKPRAHRT
                     GA"
     gene            complement(1069..1821)
                     /locus_tag="VGN19_13905"
     CDS             complement(1069..1821)
                     /locus_tag="VGN19_13905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020015091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEV7197024.1"
                     /translation="MTYQAAFKVWRGDADGGDLQDYAVEVNEGEVVLDIIHRLQATQA
                     PDLAVRWNCKAGKCGSCSAEVNGRPRLLCMTRMSTFTEAETVTVTPLRAFPVQRDLVT
                     DVSFNYQKAREIQAFSPPAELAPGDYRMQQVDVERSQEFRKCIECFLCQDVCHVVRDH
                     EDNKEAFAGPRFLMRIAELDMHPLDTADRRPAAREEHGLGMCNITKCCTEVCPEHIKI
                     TDNALIPLKERVVDRHYDPVVWLGNKIRRRQS"
     gene            complement(1818..>3326)
                     /locus_tag="VGN19_13910"
     CDS             complement(1818..>3326)
                     /locus_tag="VGN19_13910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013838830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
                     /protein_id="HEV7197025.1"
                     /translation="RTGLELIRTLQQKIVSLQQEDHRESGDYESHLRVFAELTITDIL
                     KGDGGEVSGAFGYWRESGRFVLFEAPAIILATGGIGKSFKVTSNSWEYTGDGHALALR
                     TGANLINMEFVQFHPTGMVWPPSVKGILVTESVRGDGGVLRNSEGSRFMFDYVPDVFR
                     GQYADTEDEADRWYKDPENNKRPPELLPRDEVARAINNEVKEGRGSPHGGVFLDVSTR
                     LPAEEIRRRLPSMHHQFKELADVDITAEPMEVGPTCHYVMGGVEVDADTAATSVPGLY
                     AAGEVAGGMHGSNRLGGNSLSDLLVFGRRAGAGAAEYVASQGSSRPQIAETDLEAAAA
                     TALAPFRDAPENPYSLHQELQQKMNDLVGIIRREGEVREALAMLDDLDERAKSVGVEG
                     HRQFNPGWHLALDLRNMLAVCRCVALSALERTESRGGHTREDHPAMDPQWRGVNLVCS
                     LDVEGEVQLGRKPVPEIRLDLLELFERTELAKYLTAQELARLDGGRAEGSQL"
BASE COUNT          503 a         1154 c         1130 g          539 t
ORIGIN      
        1 ggggccgtcc actccaggtt gttgaccatg atggcggcgt tctcgccctc gaagtcgagg
       61 aacggacgga cctgctcctg gatgcgcccg acccagtcgg cggtctgctc cttggtcttg
      121 agcacccgct ccgccgaagg acgcgggtcg ccgatgagcc cggtggaccc accgaccaga
      181 cagatgatcc gatggcccgc gcgttgcagg tgccgcatga cgacgagctg gaccaggttg
      241 ccgaagtgca gggacggagc cgtcgggtcg aaaccgcagt acgccgtgat cggcccgtcg
      301 tcgagtgcct ggcgcagctc ggactcgtcg gtggtctgag ccaccagtcc tcgccacttc
      361 agctcgtcga ggatgttcgt cacggtgtca gcgctccttc gcggtgggcc tgcgccgcgg
      421 tgcgcggcgt gcccagcctg ccctatgcgc cggtccggtg tgcacggggt ttcgcaggac
      481 ggtatgccga aacggtcggc tccccatcca gccaaaaccg ccacgggtag gccgcggcgt
      541 cgccgcccgc gccagagacc cccacgcggg gaccggtgcg gatgtcggac aggcgaacgg
      601 gccgcgagcg tgctccgaac aggaccgggc tcccgggctg gcacgcgtcg gctccagagt
      661 ccgcgccgct gagcgccagg gtcgtggtca gcctcgccgg gcccctggcc cagtcccgtc
      721 tggcgatgcc cacccggcgg gtggacgcca cctccccgcc gcccacaacc tcgccggccc
      781 gcagcaggac ggcactggct tcgccggtag caccgcagac gacgttggcg caccagtgca
      841 tgccgtacgt gaagtagacg tagaggtgcc cggccgcacc gaacatcacc tcggttcgcg
      901 gagtcggccc ccggaaagca tgcgacccgg ggtcgttgac gccggcatac gcctccacct
      961 cggtgagccg gatcgtgacg ccggcgtggg tgagggtgca cccgagcagc gaaggcgcca
     1021 cgtcgagcac gtcctcggca aagaactcac gtggcagggc agtcgggctc agctctgccg
     1081 ccgcctgatc ttgttgccca gccacacgac gggatcgtaa tgacggtcga cgacccgctc
     1141 cttgagcggg atgagcgcgt tgtcggtgat cttgatgtgt tcggggcaga cctcggtgca
     1201 gcacttggtg atgttgcaca tcccgaggcc gtgctcctca cgggcagcgg gccgccggtc
     1261 tgccgtgtcg agcggatgca tgtcgagctc ggcgatccgc atgaggaacc gaggtcccgc
     1321 gaacgcctcc ttgttgtcct cgtggtcgcg gacgacatgg cacacgtcct gacacaggaa
     1381 gcactcgatg cacttgcgga actcctggct gcgctccacg tcgacctgct gcatccggta
     1441 atcgccaggg gccagctcgg caggcggcga gaaggcctgg atctcgcggg ctttctggta
     1501 gttgaacgac acgtcggtga cgaggtcgcg ctgcaccgga aaggcgcgca gcggcgtgac
     1561 cgtcaccgtc tcggcctccg tgaacgtgct catccgggtc atgcacagca gccgcgggcg
     1621 accgttcacc tccgcgctgc acgacccgca cttgcccgcc ttgcagttcc agcggaccgc
     1681 aagatcgggc gcctgcgtgg cctgcagccg atggatgatg tcgagcacga cctcgccctc
     1741 gttgacctcg acggcgtagt cctgcaggtc gcccccatcg gcgtcacccc gccacacctt
     1801 gaaggctgcc tggtaggtca tagctgactc ccctctgcgc ggcccccgtc gagccgggcc
     1861 agctcctgcg cggtcaggta cttggcgagc tcggtgcgtt cgaacagctc cagcaggtcc
     1921 aggcggatct ccgggaccgg cttgcgcccc agctggacct ctccctcgac gtcgagggag
     1981 cagaccaggt tgacgccgcg ccactgcggg tccatggccg ggtggtcctc gcgggtatgc
     2041 ccaccacgag actcggtgcg ctccaacgcg gacagggcga cgcaccggca taccgccagc
     2101 atgttgcgca ggtccaaggc gaggtgccac cccgggttga actgccgatg cccttccacg
     2161 ccaacagatt tcgcccgctc gtccaggtcg tccagcatgg cgagggcctc gcggacctca
     2221 ccctcgcgcc ggatgatgcc gaccaggtcg ttcatcttct gctggagctc ctggtgcagc
     2281 gagtacgggt tctccggggc atcccggaag ggcgcgagag cggtcgcggc tgcggcctcg
     2341 aggtccgtct cggcaatctg cggacgcgag ctcccttgtg atgccacgta ttccgcggcg
     2401 ccggcgcccg cacgccgacc gaagaccagc aggtcggaca ggctgttgcc accgagacgg
     2461 ttggacccgt gcatgccacc agccacctcg cccgcggcat acaggccagg cacgctggtc
     2521 gccgcggtat cggcgtcgac ctcgacgccg cccatgacgt agtggcaggt ggggccgacc
     2581 tccatcggct cagccgtgat gtccacgtcc gcgagctctt tgaactggtg gtgcatcgaa
     2641 ggcagcctgc gacggatctc ctcggcgggc aggcgggtcg acacgtccag gaagacgccc
     2701 ccgtgcgggg agccccggcc ctccttgacc tcgttgttga tggctcgggc gacctcgtca
     2761 cgaggcagca gctcgggggg ccgcttgttg ttctcggggt ccttgtacca gcggtcggcc
     2821 tcgtcctcgg tgtcggcgta ctgcccgcgg aacacgtccg ggacgtagtc gaacatgaac
     2881 cgggagccct cggagttgcg gagcactccc ccgtcgccac gcacggactc ggtgaccagg
     2941 atccccttga cggagggggg ccacaccatg ccggtggggt ggaactggac gaactccatg
     3001 ttgatcaggt tcgcgccggt acgcagggcc agagcgtggc catcgccggt gtactcccag
     3061 gagttgctgg tgaccttgaa ggacttgccg atgccaccgg tggccaggat gatcgccggc
     3121 gcctcgaaca ggacgaagcg gccggactca cgccagtacc cgaacgcgcc cgacacctcg
     3181 ccgccgtcgc ccttgaggat gtcggtgatg gtcagctctg cgaagacccg cagatggctc
     3241 tcgtagtcgc cggactcgcg gtggtcctcc tgctggaggc tgacgatctt ctgttgcagg
     3301 gtccggatca gctcgagccc ggtccg
//
LOCUS       DASYFY010000686         4389 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1521839, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000686 DASYFY010000000
VERSION     DASYFY010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1521839"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..993
                     /gene="ligD"
                     /locus_tag="VGN19_13915"
     CDS             19..993
                     /gene="ligD"
                     /locus_tag="VGN19_13915"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEV7197026.1"
                     /translation="MAAASKSPSIEIEVGDRDVRISNPDRVYFPARGESKLDLVNYYL
                     SVGDGIVNALRERPCMLHRFPEGVSGEKVHQKRVPQGAPPWIETVRVKFPRYNRTADE
                     LCVTELAQVIWAVQMSTVEFHPWNSRKADVEKPDEWRIDLDPGPACPWSRVQRVAEVA
                     HEVLDDLGAVGWPKTSGGSGMHIYVRIEPEWGFKDVRRAALAFAREVERRMPDDVTTT
                     WWRKDRDPADLFVDYNQNARDHTIASAYSVRGNAEGTVSTPIRWAEVHDVSPMDFTID
                     TVPERYAELGDLHAGIDDSPFAIDALLEWAARDERAGAEQPPESAESE"
     gene            1036..1440
                     /locus_tag="VGN19_13920"
     CDS             1036..1440
                     /locus_tag="VGN19_13920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005156143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HEV7197027.1"
                     /translation="MPHIRIKDAATFLGVSDDTVRRWVDSGALAATADEGGRKVVDGY
                     QVALLAREQARTATDPSSVGRSARNRFVGLVTDIIQDTVMAQVEMQCGPFRVVSLMSS
                     EAVRELGLELGSVAIAVVKSTTVIVETPEGTS"
     gene            1437..2261
                     /gene="modA"
                     /locus_tag="VGN19_13925"
     CDS             1437..2261
                     /gene="modA"
                     /locus_tag="VGN19_13925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017888283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEV7197028.1"
                     /translation="MNARLATAAVAALLVATTAACGSGSNSGASTSGSSSSTPASTTS
                     SQTSLSGHLTVFAAASLKKTFTQIGAQFEKSHPGSTVTFDFAGSSDLVSQLQQGAPAD
                     VFASADKANMAKATGDSLTAAAPVNFASNTLEIAVPKGNPAHITGFADLAKPGLKLVI
                     CAPAVPCGSAAAKVAKAAGIQLRPVSEEQSVTDVLGKVSAGEADAGLVYVTDVKGDKG
                     AVQGITFPLSSAAVNIYPIAPLKSSKNPALAQAFVDAVTGAPGQGILAAAGFAKAP"
     gene            2258..3058
                     /locus_tag="VGN19_13930"
     CDS             2258..3058
                     /locus_tag="VGN19_13930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEV7197029.1"
                     /translation="MSTARPPTPRLGLPAWVFVPAAVGGLFIVLPLVSMLTRVDWSHF
                     IALVTSDSSLAALSLSVRTSLASTGLCILFGVPMAVVLARTTFRGESVVRSLVLLPLV
                     LPPVVGGIALLYTFGRRGLLGHTLDILGIQIAFSTTAVVMAQTFVALPFLVVSLEGAL
                     RTAGQRFEEVAATLGARPTTVFLRVTMPLVAPGLASGAVLAFARALGEFGATITFAGS
                     LQGVTRTLPLEIYLQRETDPAAAVALSLLLVAASTIVIAVTRRSRSTL"
     gene            3055..4098
                     /locus_tag="VGN19_13935"
     CDS             3055..4098
                     /locus_tag="VGN19_13935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018760825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEV7197030.1"
                     /translation="MTLQAQLRVIDRGLDVSLDVPTGRTVALLGPNGAGKSTLLACVA
                     GLLKPDSGQVSLEGRVLQATDPAVWVPPHHRGVALLAQEPRLFPHLSVIDNIAFGPRS
                     SGMTRRQARAVAGEWLGEVGLMELADRRPRELSGGQAQRVAVARALATDPKLLLLDEP
                     LSSLDVETGPAVRQLLRRVLVDRTTVLVTHDILDAILLADDVAIVESGRIVERGQTAN
                     VLTRPTSDFAARSAGLNLVRGTVQGSAVCSAGGLRVEGLSEEPLTDGRRAVAVFSPSA
                     VSVYREAPAGSPRNTITASVTELEPHGHQIRVRTEHLAADVTPAAVAELNLSPGTPVV
                     LSVKASEVAVYET"
     gene            complement(4173..>4389)
                     /locus_tag="VGN19_13940"
     CDS             complement(4173..>4389)
                     /locus_tag="VGN19_13940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197031.1"
                     /translation="PTRTTTPMPVGGTISAPTKAAGRAEQTPTLAFTGSPALLQLLMA
                     SALVGLGLVALALRSRVRLQRLTRGER"
BASE COUNT          686 a         1530 c         1474 g          699 t
ORIGIN      
        1 cccagctatg ttgggcgcat ggctgcggcg tcgaagtccc cttcgatcga gatcgaagtc
       61 ggggatcggg acgttcggat cagcaacccc gatcgcgtct acttcccggc caggggtgag
      121 agcaagctcg acctggtcaa ctactacctc tcggtgggcg acgggatcgt caacgccctg
      181 cgtgagcggc cgtgcatgct gcaccggttc cccgagggcg tatcagggga gaaagtccac
      241 cagaagcggg tcccccaggg cgcacccccc tggatcgaga cggttcgcgt caagttcccg
      301 cgatacaacc gcacggccga cgagctgtgc gtcaccgagc tggcccaggt catctgggcg
      361 gtgcagatgt cgacggtcga gttccacccg tggaactccc gcaaggccga cgtcgagaag
      421 cccgatgagt ggcggatcga tctcgacccc ggcccggcct gcccctggtc ccgcgtccag
      481 cgggtggccg aggttgccca cgaggttctg gacgacctcg gtgcagtggg gtggcccaag
      541 accagcgggg gatccgggat gcacatctac gtgcggatcg aacccgagtg ggggttcaag
      601 gacgtgcgcc gcgcggcgct cgccttcgcg cgtgaggtcg agcgacgtat gccggacgat
      661 gtcaccacca cgtggtggcg caaggaccgt gaccctgcgg acctgttcgt ggactacaac
      721 cagaatgccc gcgaccacac catcgccagc gcctactcgg tgcgcggcaa cgccgagggc
      781 acggtgtcga ccccgatcag gtgggctgag gtgcacgacg tctcgcccat ggacttcacg
      841 attgacaccg tccccgagcg gtatgccgag ctcggcgatc tccacgcggg aatcgacgac
      901 tccccctttg ccatcgacgc ccttctggag tgggcagcgc gcgacgaacg cgcaggagcc
      961 gagcaacccc cagaatccgc agaatcggag tagaacgctc gccttgaccg cagatgcgga
     1021 tctagagtga tccgtatgcc gcacattcgg atcaaggatg ccgcgacctt cctcggggtc
     1081 agcgacgaca cggtgcgccg ctgggtggac agcggcgccc tggccgccac ggccgacgag
     1141 ggaggccgca aggtcgtcga cgggtaccag gtggcgttgc tggcccggga acaggcgcgc
     1201 acggccaccg acccctccag cgtggggcgc tcggcgcgga accgtttcgt cgggctggtc
     1261 acggacatca tccaagacac cgtcatggcc caggtcgaga tgcagtgcgg accgttcaga
     1321 gtcgtgtcgc tgatgagcag cgaggcggtg cgagagctgg gcctcgagct cggctcggtg
     1381 gccatcgccg tggtcaagtc aaccaccgtc atcgtcgaaa cccccgaagg aacctcatga
     1441 atgctcgcct cgccacggct gcggtcgccg cactcctggt ggccaccacg gcggcgtgcg
     1501 gctccggctc caactccggc gccagcacct ccggcagctc ttccagcacc ccagcgtcga
     1561 ccacctcgag ccagacctcg ctgtccggcc acctcaccgt cttcgccgcg gcgtcgctga
     1621 agaagacctt cacccagatc ggtgcgcagt tcgagaagtc ccacccgggc agcaccgtga
     1681 cttttgactt cgccgggtct tctgacttgg tgagccagct ccagcagggt gcaccagccg
     1741 atgtcttcgc ctcggctgac aaagcgaaca tggccaaggc aaccggtgac tccttgacag
     1801 cagcggcccc ggtgaacttc gcgtccaaca ctctcgagat cgcagttccg aaggggaacc
     1861 cggctcacat cacgggcttt gccgacctgg ccaagccggg gctgaagctt gtcatctgcg
     1921 ccccggcggt cccctgcggc tctgccgccg cgaaggtggc caaggcagcc ggcatacagc
     1981 tcaggccggt cagcgaggag cagtcggtca ccgacgtcct aggcaaggtc tccgcgggcg
     2041 aagcggacgc cggcctcgtc tacgtcaccg acgtcaaggg cgacaaggga gcagttcagg
     2101 ggatcacctt cccgctgtcg tcggcggcgg tgaacatcta tccgatcgcg cccctgaaga
     2161 gcagcaagaa ccctgctctc gcccaggcgt tcgtggatgc cgtgacggga gcacctggac
     2221 agggcatcct cgccgcggcg ggtttcgcca aggctccgtg agcacggcgc gccccccgac
     2281 accgcggctg gggctgccgg cctgggtgtt cgtccccgcc gcggtcggcg gcctcttcat
     2341 cgtgctgccc ctggtgtcga tgctcacccg agtggactgg tcgcacttca tcgcgttggt
     2401 cacgagcgac tcgtcgttgg cggccttgag cctgagcgtg cggacgtcgt tggcaagcac
     2461 cggcctgtgc atcctgttcg gggtgccgat ggcggtggtg ctggcccgca ccacgttccg
     2521 cggcgagtcg gtcgtgcgat cgctcgtgct gcttcccctg gtgttgccac cggtcgttgg
     2581 aggcatcgcc ctgctctaca ccttcgggcg tcgtggcctg ctgggtcaca ccctggacat
     2641 tctcggcatt cagatcgcct tctccaccac ggccgtcgtg atggcgcaga cgttcgtcgc
     2701 tctgcccttc ctcgtcgtga gcctcgaagg agccctccgc acagcggggc aacggttcga
     2761 ggaggtagca gcgaccctgg gggcgcggcc cacgacggtg ttcctgcgag tcacgatgcc
     2821 cttggtggca cctggcctgg cgtcaggagc ggtgctcgcc tttgcgcgcg ccctcggcga
     2881 gttcggcgca acgatcacgt tcgcggggag cctgcaggga gtgacccgca cgctgccgtt
     2941 ggagatctat ctgcagcgcg agaccgaccc ggcagcggcg gtggcactct ccctgctgct
     3001 ggtggccgcc tccaccatcg tcatcgccgt aacccgacga tcgcgatcca cgctatgacc
     3061 ctgcaggccc agctccgcgt catcgatcgc ggcctcgacg tgtcactcga cgtgcccacc
     3121 gggcgcaccg tcgccctgct cggcccgaac ggcgccggca agtcgaccct cctcgcctgc
     3181 gtggccgggc tgctcaagcc agattcaggg caggtgagcc tcgagggtcg ggtgcttcag
     3241 gcgacggacc cggccgtgtg ggtcccgccg caccaccgcg gagtcgccct cctggcgcag
     3301 gagcctcggc tgtttccaca cctctcggtc atcgacaaca tcgcgttcgg cccgcgcagc
     3361 tcgggtatga cgcgccgcca agcccgcgcg gtggccggcg agtggctggg cgaggtcggc
     3421 ctcatggaac tggctgaccg tcggccgcgc gaactctcag gggggcaggc gcagcgtgtc
     3481 gccgtcgcgc gggccttggc caccgatccg aaactcctcc tgctggacga accactctcc
     3541 tcactcgacg tggagacggg gcccgccgtc cggcagctcc tgcgacgggt gctcgtagac
     3601 cgcacgaccg tgctggtgac tcacgacatc ctcgatgcca ttctgctggc cgacgatgtc
     3661 gcgatcgtcg agagcgggcg catcgtcgaa cgtgggcaga ccgccaacgt gctcacccgt
     3721 ccgaccagtg acttcgcagc gcgcagcgcg ggactcaacc tggtgcgcgg gactgtgcag
     3781 ggctcagcgg tctgcagcgc cggcgggctg cgcgtggaag gtctgtcgga agagccgttg
     3841 accgacggcc gtcgggccgt ggccgtgttc agccccagcg cggtgagcgt ctatcgggag
     3901 gcgcccgcgg ggagcccccg caacacgatc acagcctcgg tgacggagct cgagccccac
     3961 gggcatcaga tccgcgtccg cacagagcac ctcgccgcgg acgtgacacc tgcagccgtc
     4021 gccgagctga atctctcgcc cggcacaccc gtcgtgctct ccgtgaaggc cagtgaagta
     4081 gccgtctacg agacgtgagc acgacgggcg cccccgccag gcgagcagtc agacccgggt
     4141 cggactcgct tcgaaccggt cacgtggtga cgtcagcgtt ctcctcgggt gaggcgttgg
     4201 agccggaccc gcgaccggag cgccaacgcg acgagcccta gaccgaccag ggccgacgcc
     4261 atcaagagct gaagcagagc cggactgccc gtgaacgcca aagtcggcgt ctgctccgcg
     4321 cgtccggcgg ccttggtggg tgcggagatc gtgccgccga ccggcatggg cgtcgtggtc
     4381 ctcgtcggt
//
LOCUS       DASYFY010000687         1667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_469659, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000687 DASYFY010000000
VERSION     DASYFY010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469659"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            296..553
                     /locus_tag="VGN19_13945"
     CDS             296..553
                     /locus_tag="VGN19_13945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197032.1"
                     /translation="MSSTDHPPVARYRRGVSRTADGSPSIRALDALAVLVGLLVLTVG
                     TIWCAMIGAWAAMVTLLPIGLSLVLIPARGSRNQAPSGGQA"
     gene            679..1593
                     /locus_tag="VGN19_13950"
     CDS             679..1593
                     /locus_tag="VGN19_13950"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEV7197033.1"
                     /translation="MTGGGERCQASPLRSWDRSGRPLPLISAHRAGLTDDTSRRHPWA
                     ALRAIVNSGCDLVELDVRLSRDGVAVVEHEADVVVGGRSVPIGRLTVAELAQTSRGCL
                     PLDDALRILAGRAAAHLDVKEVETTDDLLTLIDAAATRLGAANVVVTGLTDEDIATVR
                     AWSRRSYPELLVGLAVGRDLRGLPPQRLLRTALEELAPGGRLRRSDANLVVSHKDWAR
                     VWIRRWARRRGLPLLVWTVNKPSEMRRWLTDPYLWALTTDQPLRALTLRPDSAQKRGR
                     WRRCPRGRLRRRRRPTRGALVEILDPEH"
BASE COUNT          236 a          580 c          575 g          276 t
ORIGIN      
        1 agaggcccaa ccagggggct cttccagatg cggaccaact gcgggggccc cgtctccacc
       61 acgggttcgg agcgacacac tcccgcggtc ggcgccatgg ggccgcgccg aagtccggtt
      121 gaccacgacg gtgcggccgg acgtgacaca cctacgactg taggcacacg cggcgggatt
      181 cacgttgcgc gaggtccacc cgccacgggc agccctcatg cgcgtcgata gccaccgccc
      241 gtcgctatca gtgtggggac tggccgtagg cgtcgacccg gaccatcatc gccgtgtgag
      301 ttcgactgac catcctcctg tcgcgcgcta tcggcgcggg gtgtcacgga ccgcggacgg
      361 ctcaccgtcg atccgggcgt tggacgccct ggcggtgctc gtcgggctgc tcgtcctcac
      421 agtaggaacc atctggtgcg cgatgatcgg cgcctgggcc gcgatggtca ccctgctacc
      481 gatcgggctg agcctcgtcc tgatcccggc gcgtggcagc cgaaaccagg ccccttctgg
      541 tggccaggcg tgagttggta gctcgagtcg gacgcaccgc ggtggcggaa gcgcgctcac
      601 cagcgacgag ttgcgggacg tgagcgtctt ctccggtggc ccggtcacaa gccggccact
      661 cgagagtgga atgcgggcat gaccgggggc ggcgaacgtt gtcaggcgag ccccctgcgc
      721 tcctgggacc gcagcgggcg tccgctaccg ctcatctccg cccatcgagc cggtctgacg
      781 gacgacacgt ctcggcggca cccctgggct gcgctgcgcg ccatcgtcaa ctccggctgc
      841 gacctcgtag agcttgacgt gcggctcagc cgggacggcg tcgcggtcgt cgagcacgag
      901 gcggacgttg tcgtcggcgg tcggtcggtg ccgattggcc ggctcactgt cgccgagctg
      961 gcccagacgt cacgcgggtg tctcccactc gatgacgcgc tgcgcattct ggcgggccgt
     1021 gcggctgcgc acctggacgt gaaggaggtc gaaacgaccg atgacctcct cacactgatc
     1081 gacgcggccg caacccggct cggggccgcc aacgtcgtgg tcaccgggtt gaccgacgag
     1141 gacatcgcga ctgtgcgggc atggtcgcgt cgttcgtacc cggagttgct cgttggcttg
     1201 gccgtcggcc gcgacttacg cggcctccca ccccagagac tcctccgtac cgcactggag
     1261 gagctcgctc cgggcggccg tttgcggcgc tccgacgcca acctcgtcgt ctcccacaag
     1321 gattgggcgc gtgtctggat ccgccgttgg gctcggcgcc gagggcttcc gctgctggtc
     1381 tggaccgtca acaagccgtc cgagatgcgt cgctggctca ccgaccctta cttgtgggcc
     1441 ctcacgaccg atcagcccct cagagcgctc acgctccgcc cggacagcgc gcagaaacgt
     1501 gggcgttggc gccgctgtcc gcggggacgc ctgaggcgcc gccgccgtcc gacgcgaggt
     1561 gcccttgtcg agatcctcga tcctgaacac tgagtgttgt gccaggcctg cctgtcaagg
     1621 ctttcggata aaggggctgg tcagaatcac gccgcgtccg gcaggta
//
LOCUS       DASYFY010000688         1968 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1259479, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000688 DASYFY010000000
VERSION     DASYFY010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259479"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..656)
                     /locus_tag="VGN19_13955"
     CDS             complement(108..656)
                     /locus_tag="VGN19_13955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013838961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-copper oxidase subunit III"
                     /protein_id="HEV7197034.1"
                     /translation="MISVGTIVWLASELMFFAALFAMYFTMRSVNPTLWAHDTEFLNV
                     PFAAINTTVLVLSSVTCQMGVFAAERGDVRRLRRWFALTFLMGAFFVGGQIFEYTALV
                     THDGLTLSSDSYGSVFYLTTGFHALHVTGGLIAFLFVLGRIYASRHFTHRHATTAIVV
                     SYYWHFVDVVWLGLFTMIYLLK"
     gene            848..1915
                     /locus_tag="VGN19_13960"
     CDS             848..1915
                     /locus_tag="VGN19_13960"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEV7197035.1"
                     /translation="MDIVALAGLVGHSTSSVPGLLATVSAHADAVTEDVLQPLTWASA
                     PRTWVFEPVPALAVAIVGWLYVAGVLRMRRRGDHWPIGRSLAFLVGGLGTLLIATQSF
                     LAAYDDVLLSVHMGQHMLLAMVAPIFLALGAPITLALRTLRGSSRRLLLRVIHSRVAA
                     VLTFPLVAGAIYIINPWVLYYSPLYEATLRNPLLHDLNHLHFVLVGCLWFWALLGIDP
                     LPNRPSYPMRLIALFAMLPFHAFLGVTIMDSPRLLAEDYYVGLHRTWGDSLLADQQMA
                     GGLLWSSGDSMAIVLLAVIFVQWSRASDREARAIDRRLDLAEARAAAAAAAAAVPFSV
                     AEPAPVTAVATVPGGHGPRAP"
BASE COUNT          284 a          670 c          673 g          341 t
ORIGIN      
        1 ccagtccggc ggccgggtgt cgtcgtcgtg gtaccgagga ggtcacgtgg aaaccttctg
       61 ggtcagggag ctcggggtca gggtcatagt catgggtgtc cgacccctca cttcagcagg
      121 tagatcatcg tgaacagtcc cagccagacc acgtcgacga agtgccagta gtacgacacg
      181 actatcgccg tggtggcgtg ccggtgcgtg aagtgccggc tggcatagat ccgtcccagg
      241 acgaacagga aggcgatcag tccaccggtc acgtgcaggg cgtggaaccc ggttgtcagg
      301 tagaagaccg agccgtagct gtcgctggag agcgtcaggc cgtcgtgcgt gacaagggcc
      361 gtgtattcga agatctgccc gccgacgaag aaggcgccca tgaggaaggt cagtgcgaac
      421 caccggcgca gccggcggac gtcgccccgc tcggccgcga agacccccat ctgacaggtc
      481 acgctcgaga gcacgagcac ggtcgtgttg atcgctgcga aggggacgtt gaggaactcc
      541 gtgtcgtggg cccacagggt cgggttcacc gaccgcatcg tgaagtacat cgcgaacagc
      601 gccgcaaaga acatcagctc gctggccagc cacacgatcg tcccgacgga gatcatgttg
      661 ggccggttga gggacgggtg cgccggagtg ctctccagga cagatgcagt cgccacgagg
      721 gcagactagc caggtccgga ctcccatggt ggcccgaccc ccccggtgtt gcgaggtttt
      781 gcctcgcagc cgctgacagc cctgatgcac cccgctgagg cgacctgcgc tggcctaccc
      841 tgacgacgtg gacatcgtcg cgctggcagg gcttgtgggt cattccacga gttcggttcc
      901 gggcctgctc gcgaccgtgt cggcgcacgc ggacgcggtc accgaggacg tgctgcaacc
      961 gctcacctgg gccagcgcac ccaggacctg ggtcttcgag ccggtgcccg cgctcgcagt
     1021 tgcgatcgtc ggctggctgt acgtcgccgg ggtcctgcgg atgcggcgcc gcggcgacca
     1081 ctggcccatc gggcggtcgc tggccttcct cgtcggcggt ctcggcacgc tcctcatcgc
     1141 cacccagtcg ttccttgccg cgtacgacga cgtgctgctc agcgtccaca tgggccagca
     1201 catgctgctg gccatggtcg cgccgatctt cctggcgctc ggcgccccca tcacgcttgc
     1261 gctgcgaacc ctgcgcggca gttcgcgccg gctgctgctg cgggtgatcc actcgcgggt
     1321 cgcagcggtg ctgaccttcc cgctcgtcgc cggggcgatc tacatcatca acccgtgggt
     1381 cctgtactac tcgccgttgt acgaggcgac actgcgcaac ccgttgctgc acgacctgaa
     1441 ccacctgcac ttcgtgctgg tgggctgtct gtggttctgg gctctgctgg gcatcgatcc
     1501 gctgcccaac cggccgtcgt acccgatgcg cctgatcgcg ctgttcgcga tgctgccgtt
     1561 ccacgcgttc ctcggcgtca cgatcatgga ctcgccgcgg ttgctcgccg aggactacta
     1621 cgtgggcctg caccgcacgt ggggggactc gctgctcgcc gaccagcaga tggccggtgg
     1681 gctgctgtgg tcctcaggtg actcgatggc gatcgtcctg ctcgcggtga tcttcgtgca
     1741 gtggtcccgc gcctcggacc gggaggcacg tgccatcgac cgacgcctgg acctggccga
     1801 ggcccgggcc gcggctgctg ctgcggcggc ggcggtgccc ttctcggtcg cggagccggc
     1861 gcccgtcacc gccgtggcga cggtgcccgg cgggcacggg ccccgcgcgc cctaggatcg
     1921 cggccatgac gaccgaggcc gacccgtccc gcctgaccgt cgtggtct
//
LOCUS       DASYFY010000689         3560 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_313056, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000689 DASYFY010000000
VERSION     DASYFY010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313056"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1388
                     /gene="dinB"
                     /locus_tag="VGN19_13965"
     CDS             105..1388
                     /gene="dinB"
                     /locus_tag="VGN19_13965"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEV7197036.1"
                     /translation="MSRRQFTLPQRNASHPPDDTGCTVLHVDMDAFYASASLLSRPEL
                     VGTPVIIGGGGNRGVVLSATYEARAFGVASAMPMSRARRLCPQATVIGPDHALYSRIS
                     AAVMATFETITPIVEPLSLDEAFLDVAGAVRRLGRPTLIGQLLRDTIHDEQGITCSVG
                     VAPTKFVAKLASGLAKPDGMVVVPRDEVVAFVQQLPVGALWGVGDKTEETLVRLGLHT
                     VADIAHTPLDTLRRALGDTAGPHLHDLAWGRDARSVEPVRRERSIGSDETFEFDVDDP
                     AYIHRQLLKLSDRTAARVRSAAMLGRTVTVKVRFADFTTITRSKTLRDPTDVSRDIFD
                     TAKTLFDGLGLVRARIRLVGVRMEGLVEAQGAPIQGLLDEPDHGWRDADRAVDRASAR
                     FGAGSVRPASLISDKDRAGSGRREAREGPPTPPNG"
     gene            1500..1928
                     /locus_tag="VGN19_13970"
     CDS             1500..1928
                     /locus_tag="VGN19_13970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006502366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3040 domain-containing protein"
                     /protein_id="HEV7197037.1"
                     /translation="MNADSQEVNVPLSEHEQQLLEQMEQALYAEDPKFASQMQGSGAK
                     AAARRRIAIGVVGVLVGLGLVLVGVNTTMWLGAAGFALMVASVAFAVTPPRRRAALGT
                     VQPDGSVRRTAPSARARQTKQSGSFMHRLEERWDRRRDEY"
     gene            complement(1931..2413)
                     /locus_tag="VGN19_13975"
     CDS             complement(1931..2413)
                     /locus_tag="VGN19_13975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HEV7197038.1"
                     /translation="MTASVWIPALLIVIGMAGIVVPGVPGLFLVLAGVLIWAWETGTT
                     LAWSVFAVAVVMWGAGLVLRYSVPERRLRAAGVRRSTLVLAAVLGAVGFFVIPVVGAA
                     VGFVLGIYLMELGHSRSSADAWASTRSALAAVATSMGIELATALAIALTWVIGVLVTR
                     "
     gene            complement(2447..2668)
                     /locus_tag="VGN19_13980"
     CDS             complement(2447..2668)
                     /locus_tag="VGN19_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197039.1"
                     /translation="MTTLLAPNLTAADRCDRCGAQAYVRARLHAGGELLFCAHHGREH
                     IPKLREHAEIHDESERLHETPTVAPVDER"
     gene            3011..>3560
                     /locus_tag="VGN19_13985"
     CDS             3011..>3560
                     /locus_tag="VGN19_13985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEV7197040.1"
                     /translation="MAEATTAKKAATTKSSSDYSAHHLQVLEGLEAVRKRPGMYIGST
                     DGRGLMHCLWEIIDNAVDEALAGHGDRIDVVLHRDGSVEVRDNARGIPVDIEPRTGLT
                     GVEVVFTKLHAGGKFGGGSYTASGGLHGVGASVVNALSSRLDVEVDRDGVTWAMSFHR
                     GEPGTFQDPGAPSPDNPFTPFTS"
BASE COUNT          587 a         1225 c         1194 g          554 t
ORIGIN      
        1 ccttgctcgc gctggaggac gccgccagca ggcaccccga gttcggcttc ctcggacagc
       61 tgggcacggc ggtacacgtc ctcgctcaga actgagccgg tgccgtgagc cggcgtcagt
      121 tcacgctccc gcagcgcaac gcctcccacc ctcccgacga caccgggtgc accgtcctgc
      181 acgtcgacat ggacgccttc tatgcctcgg cctccctcct gagccgccct gagctggtcg
      241 gcaccccggt gatcatcggg ggcggaggca accgaggggt ggtcctctcc gccacctacg
      301 aggcccgtgc cttcggggtg gcctcggcca tgccgatgtc ccgtgcccgt cggctgtgtc
      361 cccaagccac cgtgataggc ccagaccacg cgctgtacag ccggatctct gccgcggtca
      421 tggcgacctt cgagaccatc accccgatcg tggagccgct gtcactggac gaggcgttcc
      481 tcgatgtcgc cggtgcggtg cggcgccttg gtcgaccgac gctcatcggc cagctgctac
      541 gcgacaccat ccatgacgag cagggcatca cgtgttccgt gggggtggct cccaccaagt
      601 tcgtggccaa gctcgcctca ggcctggcca agcccgacgg catggtggtc gtgcctcgcg
      661 acgaggtggt cgccttcgtc cagcagctgc cggtcggcgc cctgtggggt gtgggggaca
      721 agaccgaaga gaccttggtg cggcttgggc tgcataccgt tgccgacatc gcgcacaccc
      781 cactggacac gctgcgacgc gccctgggcg acacggctgg tccgcatcta catgacctgg
      841 cctgggggcg ggacgcccgc tccgtcgagc cggtccgccg ggagcgcagc atcggttcgg
      901 acgagacgtt cgagttcgac gtggacgacc cggcatacat ccatcgccag ctcctcaagc
      961 tcagcgaccg gaccgccgcg cgagtccgtt ccgcagccat gctgggccgt accgtcacgg
     1021 tcaaggtgcg gttcgccgac ttcacgacca tcacgcgaag caagaccctg cgtgacccga
     1081 ctgacgtcag ccgcgacatc ttcgacacgg ccaagaccct gttcgacggg ttgggactgg
     1141 tgcgggcacg catccgactg gtcggcgtcc gcatggaggg tctggtcgag gcgcaggggg
     1201 cgcccatcca gggtttgctg gacgagccgg accatggttg gcgtgacgcc gaccgtgccg
     1261 tcgaccgggc cagcgcgcgt ttcggcgccg gtagcgtgcg ccccgccagc ctcatcagtg
     1321 acaaggaccg cgccggaagt ggtcgtcgtg aggcgcgaga gggtccaccg acacccccga
     1381 acggctagtg catcaacgcc tggcgacata tcctgaagtt gccatcacag gggcgctgac
     1441 cggcgacgac gcacgcggaa acgcgatgca acgccacgag gcgctcgggc gttggtcaga
     1501 tgaacgccga cagccaggag gtcaacgtgc cgctctcaga gcacgaacag cagctgctcg
     1561 aacagatgga gcaggcgctg tatgccgagg accccaagtt cgcgtcccag atgcagggtt
     1621 caggtgcgaa ggctgcggcc cgacgccgca tagccatcgg tgtcgtcgga gtgctcgtcg
     1681 gcctaggtct ggtcctggtc ggcgtcaata cgaccatgtg gctcggagcg gctggatttg
     1741 ccctgatggt cgcgtcggtg gccttcgccg tcaccccgcc gcggcggcgc gccgctctgg
     1801 gtaccgtcca accggacggg tcggttcgtc gaaccgctcc gtccgcgcgg gcccgtcaga
     1861 ccaagcagtc cggctcgttc atgcaccgcc tcgaagagcg ttgggaccgg cgccgggacg
     1921 agtactgagc tcagcgggtc accaacaccc cgatgaccca ggtgagggcg atagccaggg
     1981 ccgtcgccag ctcgatcccc atcgacgtgg caaccgccgc cagggcgctg cgagtcgacg
     2041 cccacgcgtc cgcactcgag cgtgagtgcc ccagctccat cagatagatc cccagaacga
     2101 agcccactgc agcgccgacg accgggatca cgaagaaccc cacggcgcca agtaccgccg
     2161 caagaaccag cgtcgaccgc cgcactcccg ctgcgcgaag tcgacgctcg ggcacggaat
     2221 accgcaacac cagaccggca ccccacatca ccacggcaac ggcgaagacc gaccacgcca
     2281 gggtggtccc cgtctcccac gcccagatca gcacgcccgc gagcaccaga aacagcccgg
     2341 gaaccccggg aacgacgatc cccgccatcc cgatcacgat caggagggcg gggatccaga
     2401 ctgaagccgt cacggccgag ggccaggccc gcgggtcaga gcctcgtcag cgttcgtcga
     2461 caggagcgac cgtgggggtc tcgtgcagtc gctcgctctc gtcgtggatc tcagcgtgct
     2521 cgcgcagctt ggggatgtgc tcgcggccgt ggtgggcgca gaacaacagc tcgccgcctg
     2581 cgtgaaggcg ggcgcgcaca taggcctggg cgccgcagcg gtcgcagcgg tcagccgcgg
     2641 tcagattggg tgccagtaaa gtggtcacgt cagccttcct ttgtcttcgt gtctcttatg
     2701 agacgtcctt ctccggctcg gggttgtcac cagctggtca cgatctgcat caccagaatg
     2761 acgttccggt ccggcgccgg tgataacagt caagcacggt cagttcttcc catcgtgtat
     2821 tggtccgtga tgtaggtcat gtcatgtcgc attgggggat tcgtagatcg gctgtccagt
     2881 ggatgggtcg gcgtgccgac gacctgccca gcagcgtatg ccgcgtgcct gcgcggcggt
     2941 ccagacggcc cgggatagcc tgcgggaacc ggtcagccac ctggccgtcg gatcaccaga
     3001 agggaagacc gtggctgaag ccaccactgc caagaaggcc gcgacgacca agtcgtcctc
     3061 ggactacagc gcgcaccatc tgcaggttct cgaggggctc gaggccgtgc gtaagcgtcc
     3121 ggggatgtac atcggttcga ccgatggccg gggcctgatg cactgcctgt gggagatcat
     3181 cgacaacgcg gtggacgagg cgcttgccgg gcatggtgat cgcatcgacg tggtcctgca
     3241 ccgggacggg tcggtcgagg tgcgggacaa cgcccgcggc atccccgtcg acatcgagcc
     3301 gcggaccggg ttgaccgggg tcgaggtggt cttcacgaag ctgcacgcgg gcggcaagtt
     3361 cggtggcggc tcgtacaccg cgtccggcgg tctgcacggc gtgggcgcct cggtcgtcaa
     3421 cgccctgtcc tcacggctcg acgtcgaggt cgaccgcgac ggcgtgacct gggcgatgtc
     3481 gttccaccgg ggagagccgg gcaccttcca ggatccgggt gcgccgagcc ccgacaatcc
     3541 gttcacgccg ttcacctccg
//
LOCUS       DASYFY010000690         5917 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1102595, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000690 DASYFY010000000
VERSION     DASYFY010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5917
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102595"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1114
                     /locus_tag="VGN19_13990"
     CDS             <1..1114
                     /locus_tag="VGN19_13990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010148818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEV7197041.1"
                     /translation="LSSGARDELTAAVDAARAGYADLGTWLTSELLPQAPEPDACGRD
                     RYQLLSRSFLGASVDLEETYAWGQQEVERITAEMLQVAEQLKPGSTVKEAIAALEADP
                     AYQLHGTDELKAWMQTRADEVIANLADTHFDIPGPVRTIECLIAPTQTGGIYYTGPSE
                     DFSRPGRMWWSVPKGVTEFGTWKELTTVYHEGVPGHHLQVAQTVFRSELLNTWRRLAA
                     WTSGHGEGWALYAERLMAELGYMDDPGHRMGLLDSQSLRASRVVIDIGVHCGFEAPAE
                     VGGGEWTYDKAWQYLTAHANQGEAWLRFELDRYLGWPGQAPSYKIGERLWMQLRDQVQ
                     EREGSAFSLKDFHRRALDIGGVGLDTLREAVLGELA"
     gene            1122..2999
                     /locus_tag="VGN19_13995"
     CDS             1122..2999
                     /locus_tag="VGN19_13995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HEV7197042.1"
                     /translation="MALALTLVALVATVIVIAGTARRIGAPAPLLLIAAGIVGSYLPF
                     ISEPQLTPEIVLVGLLPPLLYSAAVRTSLVDFRANTSAIFALSVGLVLFTAAGVGLVT
                     WWLLPVPFAVAFALGAIVAPPDAVAASAVARRIGLPRRVVTILEGESLVNDATALVSL
                     RTAILGFTAVGAVSFGSMTLDFGLAVVVGLGFGVLVALAIGLVRRQLTDPALDTSLSF
                     IVPYVAYLPAEHFRGSGVLAVVVAGLLLGHKSPMVQTASSRLSERINWTSVQFLLEHA
                     VFLLLGLQMRRIVADVADSGLGWERVILISLAVFAAVTILRPIYIFPVRWFEHRVLRV
                     SVERRAAAHNAIISWAGMRGVVTLAAALSLPPAPQTPYRSMLVWVAMFVTIASLLVQG
                     TTLPWLAKALHVRGPDPREDALQEATILQASVAAGLTALENCDQSDPDVIAALRTRAE
                     SRTNIVWERLGQGRDGAETPSETYRRMRMIMLQAERAELLRIRDAGVVDQEVLSHVMD
                     QLDIEESMLDRIEDRTEALRDEPLLPPERMEDECEHLAAHHDRFVPPTSPQGCEECLR
                     DGTAWVHLRLCLDCGHVGCCDSSPQRHASAHFRETVHPVMRSFEPGEAWRWCFLDEQL
                     G"
     gene            3010..3657
                     /locus_tag="VGN19_14000"
     CDS             3010..3657
                     /locus_tag="VGN19_14000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009777960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HEV7197043.1"
                     /translation="MTVSLVLASASPARKKLLHAAGIDPSVVVSSVDEAVVLETARTT
                     YGQLAAEDVALLLARAKAEDVAAQIDHAVIVGCDSVLELDGEIHGKPASAAEAITRWQ
                     RMRGNAGVLHTGHWLVDTREVDSGGTGATLGATASTTVHFARLSEAEIEAYVGSGEPL
                     RVAGAFTLDGLGGPYVSAIEGDPSNVVGLSLPLLRELLGELGLTWHELRASGTPT"
     gene            complement(3668..5272)
                     /locus_tag="VGN19_14005"
     CDS             complement(3668..5272)
                     /locus_tag="VGN19_14005"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEV7197044.1"
                     /translation="MPVTSPSGTPSQSPFATGADAGSDPKVTDVRNRLAAAYEASASA
                     PEKAQAKLDSQGKLYVRDRIALLFDEGSFVEDGRFANAMASGLPADGVVTGRGTVDGR
                     AAIVIANDPTVKAGSWGARTVEKIVRATEMALREELPVFWFVDSAGARITDQVEMFPG
                     RRGAGHIFHNQVALSGKVSQVCCLFGPSAAGGAYIPSFTDLVIMVEGNASMYLGSPRM
                     AEMVVGEKVSLEDMGGARMHCTVSGMGDLLVSDDTEAIELAKLYFSYLPTSWRSEQPT
                     YAPEEPSRPLTRHTVPERESQPFDIHEVIDGLVDDESFFEIKPLFAAELVIGFGRMAG
                     ETVGIIANNSAVKGGVLFADSADKAARFIWLCDAYSIPLIYLADVPGFMIGSEVERGG
                     IIRHGAKMVSAVSSATVPQFCIIVRKAYGAGLYAMGGPGFAPDATIALPTARIAVMGP
                     EAAVNAVYANKIAAIEDETERDQFVQDMRREYEQDVDLERLAADLVLDQIIEADALRA
                     ELLLRLRYAKGRERHFATKRRDIPPV"
     gene            complement(5293..>5917)
                     /locus_tag="VGN19_14010"
     CDS             complement(5293..>5917)
                     /locus_tag="VGN19_14010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7197045.1"
                     /translation="AIMIPAGTPGFTVEPAYDKLGWHASDTHGLTFENCRVPAANLLG
                     HEGDGFKQFLKTLDDGRIAISALAVGMSQRMLEESTQYAKTRKAFGRPIGANQGVSFQ
                     IADLAVMVEASRQLTYKAAWLKDELEAGRRSVKEVKQAAAICKLYSTEAAVTATRIAT
                     QVFGGNGFMEEYPVARFYRDAKILEVGEGTSEVQRMVIARHLGLPSA"
BASE COUNT          869 a         2047 c         2039 g          962 t
ORIGIN      
        1 cctgtcgtcc ggagcgcgcg acgagctcac ggcagcggtc gacgccgccc gcgccgggta
       61 tgccgacctc ggcacctggc tcacgtccga gctgctgccg caggcgcccg aaccggatgc
      121 gtgcggccgc gaccgttacc agctgctgtc ccgctccttc ctcggagcca gcgtggacct
      181 cgaggagacc tatgcctggg gtcagcagga ggtcgagcgg atcacggccg agatgctgca
      241 ggtcgccgag cagctcaagc cgggcagcac ggtcaaggag gccatcgccg cgctggaggc
      301 cgatccggca taccagctgc acggcacgga tgagctcaaa gcctggatgc agacacgcgc
      361 cgacgaggtg atcgccaacc tggccgacac gcacttcgac atcccgggcc cggtgcggac
      421 catcgagtgc ctcatcgcac cgacccagac cggtggcatc tactacaccg gccccagcga
      481 ggacttctcc cgccccggcc ggatgtggtg gtcggttccc aagggcgtca cggagttcgg
      541 cacctggaag gagctcacga cggtctacca cgagggcgtg cccggccatc acctccaggt
      601 tgcccagacg gtgttccggt ccgagctgct caacacctgg cgacggctgg ccgcctggac
      661 gtccgggcac ggcgaggggt gggcgctgta tgcggagcgg ctcatggccg agctgggcta
      721 catggacgac ccgggccacc gaatgggact gctggacagc cagtcgctgc gcgcctcacg
      781 ggtggtcatc gacatcgggg tccattgtgg cttcgaggca cccgcggagg tcggtggcgg
      841 ggagtggacc tacgacaagg cgtggcagta cctcaccgcg cacgccaacc agggcgaggc
      901 atggctgcgc ttcgagctcg accgctacct cgggtggccc ggccaggcgc cctcgtacaa
      961 gatcggcgaa cggctgtgga tgcagctgcg cgaccaggtc caagagcgcg aaggatcggc
     1021 gttctcgctc aaggacttcc accggcgggc gctggacatc ggaggcgtcg ggctcgacac
     1081 cctgcgtgag gccgtgctcg gcgagctggc ctgatgcccg cgtggcactc gccctgacct
     1141 tggtggcgct ggtcgccacc gtcatcgtca ttgccggcac cgcgcggcgc atcggggcac
     1201 cggcaccgct cctgctcatc gcggccggca tcgtcggctc gtacctgccc ttcatcagcg
     1261 aaccgcagct gacgcccgag atcgtcctgg tcggactgct cccgccgctg ctgtactcgg
     1321 cggccgtgcg tacctcgctg gtggacttcc gggccaacac ctcggccatc ttcgccctgt
     1381 cggtcgggct ggtgctgttc accgcggccg gggtcgggct ggtcacctgg tggctgctgc
     1441 ccgtgccgtt cgccgtcgcg ttcgccctgg gcgccatcgt cgccccgccg gacgcggtgg
     1501 ctgcctcggc tgtggcccgt cggatcggcc tcccccgacg ggtcgtcacc attctcgagg
     1561 gggagtcgct ggtcaacgac gcgacggcgt tggtatcgct gcgtaccgcg atcctgggtt
     1621 tcacggcggt gggtgcggtg tcgttcgggt cgatgacgct ggacttcggg ctggcggtcg
     1681 tggtggggct gggtttcgga gtgctggtgg ccctcgccat cggcctggtg cggcgccagc
     1741 tgacggatcc cgcgctcgac acctcgttgt ccttcatcgt cccgtatgtc gcctacctgc
     1801 ctgcagaaca cttccggggt tcgggcgtct tggccgtggt ggttgccggg ctgctgctgg
     1861 gccacaagtc acccatggtg caaacggcct cctcgcgctt gagcgagcgg attaactgga
     1921 cgtcggtgca gttcctgctc gagcacgccg tgttcctgct gctggggttg cagatgcgcc
     1981 gcatcgtcgc ggacgtggcg gactcgggac tcggctggga acgcgtcatc ctcatctccc
     2041 tggccgtctt cgccgcggtg accatcctgc ggccgatcta catcttcccc gtccggtggt
     2101 tcgaacaccg ggtgctgcgg gtctcggtcg agcgccgggc cgccgcgcac aacgcgatca
     2161 tctcgtgggc cggcatgcgg ggggtggtca cactggccgc cgccttgtcg ctgcccccag
     2221 caccccagac tccgtatcgc agcatgctgg tgtgggtcgc catgttcgtc accatcgcca
     2281 gcctgctagt gcagggcacc acattgccgt ggctggccaa ggccctgcac gtgcgcggcc
     2341 cggacccacg cgaggacgcc ctccaggaag cgaccatcct ccaggcgtcg gtggcggcgg
     2401 ggctgaccgc cctggagaac tgcgaccagt ccgaccctga cgtcattgct gccctgcgga
     2461 cccgcgccga aagccggacc aacatcgtgt gggaacgcct cggtcagggc cgtgacggcg
     2521 ccgagacccc cagcgagacg tatcgtcgga tgcgcatgat catgctgcag gccgaacgcg
     2581 ccgagctgct ccgcatccgc gatgccggcg ttgtcgacca ggaggtgctg agccacgtga
     2641 tggaccagct ggacatcgag gagtccatgc tcgaccgcat cgaggaccgc accgaggcgc
     2701 tgcgcgacga accgctgctg ccccctgaac gcatggagga cgagtgcgag cacctcgccg
     2761 cacaccatga ccggttcgtc ccgcccacca gcccgcaagg gtgcgaggag tgcctgcgcg
     2821 atgggaccgc ctgggtgcac cttcggctgt gtctggactg cggtcacgtc ggctgctgcg
     2881 actcctcgcc gcagcgtcac gcgtcggccc acttccgcga gaccgtccat ccagtgatgc
     2941 gcagcttcga gcccggcgag gcgtggcgct ggtgtttcct cgacgagcag ctcggctagc
     3001 gtgacgtcag tgaccgtcag cctcgtactc gcctctgcct cccccgcccg caagaagctg
     3061 ttgcacgccg ccgggatcga ccccagcgtc gtcgtcagct ccgtggacga ggccgtggtc
     3121 ctggagacgg cacgcaccac ctatggacag ctggctgccg aggacgtcgc cctcctgctg
     3181 gctcgcgcga aagccgagga tgtcgcggcc cagatcgacc acgccgtgat cgtcgggtgt
     3241 gactcagtgc tcgagctcga cggcgagatc cacggaaagc ccgcgtcggc ggccgaggcc
     3301 atcacccgct ggcagcggat gcgcggcaac gccggcgtgc tgcacaccgg ccactggctc
     3361 gtcgacaccc gagaggtgga cagcggcggc accggggcca cgctgggtgc gacagcctcg
     3421 acgaccgtcc acttcgcccg gctgtccgaa gccgagatcg aggcctacgt cgggtccggc
     3481 gagccgttgc gcgtcgccgg ggcgttcacg ctcgacggcc tcggcggccc gtacgtctcg
     3541 gccatcgagg gggaccccag caacgtggtc ggcctgtcgc tgccgttgtt gcgagagctg
     3601 ctgggcgagc tcgggctgac ctggcacgag ctccgcgcgt ccgggacgcc tacctagacg
     3661 cctggagtca gaccggcggg atgtcgcgac gcttcgtggc gaagtgacgc tcgcggccct
     3721 tggcgtaccg caggcgcagc aacagctcgg cccgtaacgc atccgcttcg atgatctggt
     3781 cgagtaccag gtctgccgcg agccgttcca ggtcgacgtc ctgctcgtac tcgcggcgca
     3841 tgtcctggac gaactggtcg cgttcggtct cgtcctcgat ggccgcgatc ttgttggcat
     3901 agaccgcgtt gaccgccgcc tcggggccca tgaccgcgat gcgggcggtc ggtagggcga
     3961 tggtggcatc gggggcgaag ccgggaccgc ccatggcata gagcccggcg ccgtaggcct
     4021 tgcgcacgat gatgcagaac tgcggaacgg ttgccgacga cacggcagag accatcttcg
     4081 cgccgtgtcg gatgatcccg ccacgctcga cctccgaacc gatcatgaag cccggcacgt
     4141 ccgcgaggta gatcagcggg atcgagtacg cgtcgcacag ccagatgaac cgggccgcct
     4201 tgtcggcgct gtcggcgaac agcacgccac ccttgacggc cgagttgttc gcgatgatcc
     4261 cgaccgtctc gcccgccatc cgcccgaacc cgatgaccag ctcggccgcg aacaacggct
     4321 tgatctcgaa gaacgactcg tcgtcgacga ggccgtcgat gacctcgtgg atgtcgaacg
     4381 gctggctctc tcgctcaggg acggtatgcc gcgtcagcgg cctcgacggc tcttcgggcg
     4441 cgtaggtggg ctgctctgaa cgccagctcg tgggcaggta ggagaagtag agcttggcca
     4501 gctcgatggc ctcggtgtcg tcagacacca gcaggtcacc catcccggag acggtgcagt
     4561 gcatccgcgc accgcccatg tcctccaggg agaccttctc ccccaccacc atctcggcca
     4621 tccgggggct gcccaggtac atcgaagcgt tcccctcgac catgatcacg aggtcggtga
     4681 aggaggggat gtacgcgcca cctgccgcgc tcggcccgaa caggcagcag acctgggaca
     4741 ccttgccgga cagggcgacc tggttgtgga agatgtgtcc tgcgccgcgc cgaccgggga
     4801 acatctcgac ctggtcggtg atgcgagcgc cggccgagtc cacgaaccag aagaccggca
     4861 gctcctcgcg caaggccatc tcggtcgcgc ggacgatctt ctcgacggta cgggcgcccc
     4921 acgagccggc cttgacggtc gggtcgttgg cgatgacgat ggccgccctg ccgtcgacgg
     4981 tgccgcgacc ggtgacgacg ccgtccgcgg gcagcccgga cgccatggcg ttggcgaaac
     5041 ggccgtcctc gacgaagctc ccctcgtcga agagcagcgc gatccggtca cgcacataga
     5101 gcttgccctg cgagtcgagc ttggcctgcg ccttctcggg cgccgacgcg gatgcctcgt
     5161 atgccgccgc cagccggttg cggacgtcgg tcaccttggg gtcggaccca gcgtccgccc
     5221 ccgtcgcgaa cggagactgg gaaggggtgc cggaggggga ggtcaccggc ataccttctc
     5281 gcagttccgc actcatgcgc tcggcaggcc gaggtggcgg gcgatgacca tgcgctggac
     5341 ctcggaggtg ccctcgccga cctcgaggat cttggcgtca cggtagaacc gggccaccgg
     5401 gtactcctcc atgaacccgt tgcccccgaa gacctgggtg gcgatgcggg tagcggtgac
     5461 cgcggcctcc gtggagtaga gcttgcagat cgcagcggcc tgcttgacct ccttgaccga
     5521 gcgacgaccg gcctccagct cgtccttgag ccaggcggcc ttgtaggtca gctgccgcga
     5581 cgcctcgacc atgacagcga ggtcggcgat ctggaacgac accccctggt tggcgccgat
     5641 ggggcgcccg aaggccttgc gggtcttggc gtactgggtc gactcctcga gcattcgctg
     5701 gctcatcccc accgcgagcg ccgagatggc gatacggccg tcgtcgaggg tcttgaggaa
     5761 ctgcttgaag ccatcaccct cgtgacccag caggttcgcg gccgggacgc ggcagttctc
     5821 gaaggtcagt ccgtgcgtgt cggaggcgtg ccagccgagc ttgtcgtacg cgggctcgac
     5881 cgtgaacccg ggcgtgccgg ccgggatcat gatggcg
//
LOCUS       DASYFY010000691         2111 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_943471, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000691 DASYFY010000000
VERSION     DASYFY010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_943471"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VGN19_14015"
     CDS             complement(<1..497)
                     /locus_tag="VGN19_14015"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEV7197046.1"
                     /translation="MPSSRPAKATPVVIALHGRGGAAGDAFDGLHLDQHVRDTGLAVA
                     SVDGGDYYWHARRTGIDPGAMVIDDLLPLLAHQTGYAGKVALLGWSMGGYGSLLLASQ
                     LGPSRVAAVVAESAALWTAPGLSAPGAFDDRADFVAHDVFRRTAVLSRIPVRLDCGSS
                     DPFVPG"
     gene            complement(758..1471)
                     /locus_tag="VGN19_14020"
     CDS             complement(758..1471)
                     /locus_tag="VGN19_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010851492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HEV7197047.1"
                     /translation="MVTDLGAVEADLGILKSGKEADVHALRRWVPDGTSEPVRDSLLA
                     AKRYRTSEHRMFHRDAGYQEGRRVRRSREMRAMARRTEFGRELLSGQWAAAEFAALST
                     LWELGLPVPYPVQLNDREMLMEFIGDDGIAAPRLAQARPEPDLLVELFEQLRSTLTRL
                     ARQGWAHGDLSPYNVLLHRDSLVVIDWPQVVDIIGNPRGFEFLERDVANMCRWFTAKG
                     LAVDAGELMADLVAAATAR"
     gene            1754..>2111
                     /locus_tag="VGN19_14025"
     CDS             1754..>2111
                     /locus_tag="VGN19_14025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7197048.1"
                     /translation="MSRLQQTDGLTEEQQELLKLVREFVDEQIIPVAQELEHADEYPT
                     KIVEGMKEMGIFGLMIPEEYGGLGESLLTYALCVEEIARGWMSVSGIINTHFIVAYML
                     LQHGTDEQKQRYLPKMA"
BASE COUNT          351 a          713 c          736 g          311 t
ORIGIN      
        1 ccggggacga acgggtctga cgagccgcag tcgaggcgca ccggaatccg gctcagcacc
       61 gcagtccgcc tgaagacgtc gtgcgcgacg aagtcggccc ggtcatcgaa cgccccaggg
      121 gcgctgagcc cgggagcggt ccacagcgct gcgctctccg cgaccaccgc cgcgacccgg
      181 ctggggccaa gctggctggc cagcaacagc gacccgtagc cccccattga ccaccccagg
      241 agggcgacct tcccggcata cccggtctgg tgggccaaca acggcaggag gtcgtcgatg
      301 accatggcgc cgggatcgat gcccgttcgc cgggcatgcc agtagtagtc gccaccgtcc
      361 acggaggcca ccgcgagccc ggtgtcgcgg acgtgctggt ccagatggag cccgtcgaag
      421 gcgtcgcccg ccgcgccgcc ccggccatgg agtgcgatga cgacaggcgt ggccttggcc
      481 ggtcgcgacg aaggcatggc gagctgccac ccgacatcat gcccgggcca gtgtcggctg
      541 cgcagcgtgc ctgcgcgccg cgtgactcct gcaggtgcgt cgcgaccccc gcagccggag
      601 gcgccgaggg ctagggctgc tgcggcgccc tggagcaccc cgcgccgggt cagcgtggcc
      661 ctggtagacg tggccctact agacgtggcc ctactagacg tggccctggt cgacacccgc
      721 tcaccctagc gaggtggtat gcgtgtgtct gggctaatca ccgagccgta gcagccgcca
      781 ccaggtcagc catcagctcg ccggcatcga ccgcgagccc cttggcggtg aaccaccggc
      841 acatgttcgc gacgtcgcgc tcgaggaact caaagccccg ggggttgccg atgatgtcga
      901 cgacctgggg ccagtcgatg accacgagcg aatcgcggtg cagcagcacg ttgtacgggg
      961 agaggtctcc gtgcgcccac ccctgtcggg ccagtcgcgt cagcgtcgaa cgcagctgct
     1021 cgaacagctc gaccagcagg tccggttctg gcctggcctg cgccagccgg ggcgcggcga
     1081 tgccgtcatc gccgatgaac tccatgagca tctcgcggtc gttcagctgc acggggtacg
     1141 ggacgggaag gccgagctcc cacagggtgc tgagcgccgc gaactccgca gcagcccact
     1201 gcccggacag cagctcgcgc ccgaactcgg tccggcgggc catggcacgc atctctcggc
     1261 tgcgccgaac tcgccgacct tcctggtagc ccgcatcgcg atggaacatc cgatgctcgc
     1321 tggtgcggta ccgcttcgcc gcgagcaggc tgtcgcggac tggctcggag gtgccgtccg
     1381 gaacccagcg gcgaagcgcg tggacgtcgg cttccttgcc gctcttgagg atcccgaggt
     1441 cggcctcgac cgcgcccagg tcggtgacca cccagtctgg ccgtggaccc gggccatggg
     1501 tcgccccgtc ccagctggac cagcgctccc cttcgggagg ggcgtcgggg cggctgtcaa
     1561 gggaaaagct ggcgtgctct gtgtcaggca ccaagtgcat agctggaggg tgacaggcga
     1621 ggtccgacag ccgctatggg tttttggtcg tggtgggact cacacgccgc gaaagtgccc
     1681 cgggtacggc gcactcggca tactcggctg gaaggtttcc ccacaccttt cccaaccaag
     1741 gcggcgatga agcatgtctc gactccagca gaccgatggc ctgaccgagg agcagcagga
     1801 actgctcaag ctcgtgcggg agtttgtcga cgagcagatc atcccggtcg ctcaggagct
     1861 ggagcacgcg gacgagtacc cgacgaagat cgtcgagggc atgaaggaga tggggatctt
     1921 cgggttgatg atccccgagg agtacggcgg cctgggggag tcgctgctga cctatgcgct
     1981 gtgtgtcgag gagatcgcgc gcggctggat gagcgtcagc gggatcatca acacccactt
     2041 catcgtggcg tacatgctgc tgcagcacgg gaccgacgag cagaagcagc ggtacctgcc
     2101 caagatggcc a
//
LOCUS       DASYFY010000692         3770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_891471, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000692 DASYFY010000000
VERSION     DASYFY010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_891471"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VGN19_14030"
     CDS             complement(<1..284)
                     /locus_tag="VGN19_14030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197049.1"
                     /translation="MTGSTPTPETAPQADVTAALPSDLQDERLIASQGVGGFLRVFVS
                     RLRSGDLGSLPVVVGLVVIWGVFQSQNNAFLSSRNLVNLTQQSAATGTIAL"
     gene            complement(281..1084)
                     /locus_tag="VGN19_14035"
     CDS             complement(281..1084)
                     /locus_tag="VGN19_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010205353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEV7197050.1"
                     /translation="MTATLSPSTTAALALTGVSKRFGAVQALKDIEFDVHAGEVVALV
                     GDNGAGKSTLVKTIAGVYTPDAGTITFDGTPASVNSPAEAQHLGIATVFQDLALCDNL
                     DVVANLFLGRELYRGRALDEVSMEHESWRLLRQLSAKIPSVRIPVASLSGGQRQTVAI
                     ARSLLGHPKVVMLDEPTAALGVAQTAEVLNLVERLRENGLGVILISHNMSDVMAVADR
                     VSVMRLGRNNGIFNVSQTTSQEIIAAITGATNNAVSQRASRRGVQEEQS"
     gene            complement(1205..2248)
                     /locus_tag="VGN19_14040"
     CDS             complement(1205..2248)
                     /locus_tag="VGN19_14040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEV7197051.1"
                     /translation="MAACGNNGGSGGSSSSSSSSSSSGAAGGGKKIALLLPESKTTRY
                     ETFDRPLFEAAVKKDCPTCTVIYSNADQDASKQQQQAEAALTQGANVLVLDPVDGKAA
                     ASVAASAKSQGVPVVAYDRFIAGVDYYVSFDNETVGKLQAQTLVSTIKAGGKTSGDLV
                     MINGSPTDPNAASFKKGAHSVIDSSGFKVAAEYDTPDWSPDKAQAWMEGQISAVKGKL
                     VGVYAANDGTAGGAIAALKAGGVTPVPPVTGQDSELAAIQRILAGDQAMTIYKPIPPE
                     AEAAAKAALALANKQTPASTVSTQGVPSTILTPIAVTKTTIKDTIVKDGVYKVTDICS
                     GSFAAACTKAGLS"
     gene            complement(2404..3600)
                     /locus_tag="VGN19_14045"
     CDS             complement(2404..3600)
                     /locus_tag="VGN19_14045"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEV7197052.1"
                     /translation="MNPSQAAPGSQASLREANLQRVVEALRDQGAMTQIEIAGFTGLS
                     PATVSNMVKELDGVGVVELEPSIRNGRRATLVSLATGHILIAGIAFGDRDVRVAIGTG
                     PRDIIGRQRMPLPADHAADEGMDRASRLLLDLVEKAGKTMVDLRAVGVGIPAPVDSVS
                     GQVGSEGILPGWRGVAVADEMRGRVQASVLVDNTANFAALGELKCGALQGVQHGVYIK
                     LSHGVGAGLILNGELFRGAAGTAGEIGHLTIDENGPICRCGNRGCLETYIGARGLLEA
                     LAASHGPLSLRDVITRALDGDAGCRRVLEDAGRHLGVAVAGLVNLVNPEVIVLGGQLS
                     TVGSIITTPMRASLERCAIPSAAASVVVRASELGTDADVIGALVAAATLLPATEGAFA
                     NVASNS"
BASE COUNT          585 a         1241 c         1327 g          617 t
ORIGIN      
        1 agggcgatgg tccccgtcgc cgcgctctgc tgggtgaggt tgacgaggtt gcggctggac
       61 aggaaggcgt tgttctggga ctggaagacc ccccagatga cgacgagccc gacgaccacc
      121 ggaagggacc cgaggtctcc gctgcgcagc cgggagacga agacccgaag gaagccgcca
      181 accccctgcg aagcgatcag acgctcgtcc tgcaggtcgg atggcagggc cgcggtgacg
      241 tcggcctgcg gcgccgtctc cggggtcggg gtggacccgg tcatgactgc tcctcctgga
      301 cgccgcgacg ggaggcccgt tgcgagacgg cattgttcgt cgcgccggtg atggccgcga
      361 tgatctcttg gctggtggtc tggctgacgt tgaagatgcc gttgttgcga ccgagccgca
      421 tgacgctgac ccggtcggcc acggccatga cgtcggacat gttgtggctg atcaggatga
      481 ccccaaggcc gttctcacgc agccgctcga caaggttgag cacctccgcg gtctgagcca
      541 cgcccagggc cgccgtcggc tcgtccagca tgacgacctt gggatggccg aggagcgagc
      601 gtgcgatcgc gaccgtctgc cgctgcccac ctgagaggct cgccacgggg atccgcaccg
      661 aggggatctt ggcgctgagc tggcgcagca gtcgccacga ctcatgctcc atgctcacct
      721 cgtcgagcgc tcggccgcga tagagctcac ggccgaggaa gaggttggcg acgacatcga
      781 ggttgtcgca cagggccagg tcctggaaca ccgtcgcgat gcccaggtgc tgggcctcgg
      841 ccgggctgtt gacgctggcc ggggtgccgt cgaaggtgat cgtgccggcg tcgggggtgt
      901 agaccccggc gatggtcttg accagcgtcg acttgccggc accgttgtcg ccgaccagtg
      961 ccaccacctc cccggcatgg acgtcgaact cgatgtcctt gagggcctgc accgcgccga
     1021 agcgtttcga gacaccggtg agtgccagcg cggcggtcgt cgacggggag agcgtggcgg
     1081 tcatcgtcgt cctaacttcg tgggccggcc aggtgaagcg gtcgtggagc cgtatgccgg
     1141 gtggtaacgc cgggtggttc cgcgggcggg aggacggggc gtcctcccgc ccgcggacag
     1201 tgcgtcagct caagcctgcc ttggtgcacg cggcggcgaa agagccagag cagatatcgg
     1261 tcaccttgta gacgccgtcc ttgacgatgg tgtccttgat cgtggtcttg gtgaccgcga
     1321 tcggggtcag gatcgtcgag ggcacgccct gggtgctgac ggtcgaagcc ggcgtctgct
     1381 tgttggccag cgcgagcgcg gccttggcag cagcctcggc ctccggcggg atcggcttgt
     1441 agatggtcat cgcctggtca cctgcgagga tccgctggat cgcggcgagc tcggagtcct
     1501 ggcccgtcac gggcgggacc ggggtcacgc caccggcctt gagggccgcg atggcgccac
     1561 cggcggtgcc gtcgttggcg gcatagacgc cgacgagctt gcccttgacg gccgagatct
     1621 ggccctccat ccaggcctgg gccttgtccg ggctccagtc aggagtgtcg tactcggcgg
     1681 ccaccttgaa gccgctggag tcgatgacgc tgtgcgcgcc cttcttgaag ctcgcggcgt
     1741 tcgggtcggt gggcgagccg ttgatcatga cgaggtcgcc ggacgtcttg ccgccggcct
     1801 tgatcgtgct caccagggtc tgcgcctgaa gcttgccgac cgtctcgttg tcgaaggaca
     1861 cgtagtagtc gacgcccgcg atgaagcggt cataggccac gaccgggacg ccctggctct
     1921 tggcgctcgc ggccaccgag gcggctgcct tgccgtcgac cgggtcgagg acgagaacgt
     1981 tggcgccctg cgtcaacgcg gcctcggcct gctgctgctg cttgctggcg tcctggtcgg
     2041 cgttgctgta gatgaccgtg caggtcgggc agtccttctt gacggcggcc tcgaagaggg
     2101 ggcggtcaaa ggtctcgtag cgggtcgtct tggactccgg cagcaggaga gcgatcttct
     2161 taccgccacc ggcggcgccg ctcgaactgg acgaggacga gctcgacgag gatccgccag
     2221 agccgccgtt gttaccgcag gccgccaacg aggcgaggct aaggccagcc acgagagcgg
     2281 ccccggcgag acgaattgaa cgggtgggca tagctgaact cccttggtca gacgctggca
     2341 accacgattg gttccccgtg tcttgagtta atcgctggaa gtccttgacg tcaagagttg
     2401 aattcaagaa ttggacgcga cattggcaaa tgcaccctct gtcgctggca ggagggtcgc
     2461 cgccgcgacc agggcgccga tcacgtcggc gtccgttccg agctcgctgg cgcggaccac
     2521 gacggacgct gcagcgctgg gaatggcgca ccgttcgagg gacgcgcgca tcggggtggt
     2581 gatgatcgaa cccaccgtgg acagctgacc gccgagcacg atgacctcag ggttgaccag
     2641 gttgaccagg cccgccacgg ccacccccag atggcgcccc gcgtcctcga ggacccgacg
     2701 gcatcccgcg tctccgtcca gggcgcgggt gatgacatcg cgtaggctca acggcccgtg
     2761 cgacgccgcc agggcctcca gcaggccccg cgctccgatg taggtctcca gacagccgcg
     2821 gttgccgcac cggcagatgg gaccgttctc gtcgatcgtc agatgcccga tctccccggc
     2881 cgtcccggcc gccccccgga acagctcacc gttgaggatg agcccagccc cgaccccatg
     2941 ggacagcttg atgtacaccc catgctgaac cccctgcagc gccccacatt tcagctcgcc
     3001 cagggcggcg aagttcgcgg tgttgtcgac caggacggag gcttggaccc tgcctcgcat
     3061 ctcgtctgcg acggcgaccc cgcgccaccc ggggaggatg ccctcgctgc ccacctggcc
     3121 tgacacactg tccactggcg cgggtatccc cacccccact gcgcgcaggt cgaccatggt
     3181 cttgccggcc ttctcgacga ggtcgagcag cagtcgggaa gcgcggtcca tcccctcgtc
     3241 cgccgcgtgg tccgcgggca acggcatacg ttgccgcccg atgatgtccc gtggaccggt
     3301 gccgatggcg acccgcacgt cccggtcgcc gaaggcgatc cctgcgatga ggatgtgacc
     3361 ggtcgccagc gacacgaggg tggcgcgtcg gccgtttcgg atgctgggtt cgagctcgac
     3421 caccccgacg ccgtcgagct ccttgaccat gttggagacg gtcgccggcg acaatcccgt
     3481 gaaccccgcg atctcgatct gggtcatggc cccctggtcg cgcagcgcct ccaccacgcg
     3541 ctgcagattg gcttcacgca gcgaagcctg ggagcccggc gcggcctgtg atgggttcac
     3601 ggcccaaaca taagggctca acgcgtcaaa ggataggccg atggagcaag ccggggagcg
     3661 atcgcaaaca cgcgcgggtc agcaggggat caggtgctga ggctgaggcc gtgcccgaac
     3721 cggaagaggg gatcggggaa cccagggacg tcttcaccgt gctggcgcac
//
LOCUS       DASYFY010000693         3612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_313187, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000693 DASYFY010000000
VERSION     DASYFY010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313187"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2393
                     /locus_tag="VGN19_14050"
     CDS             <1..2393
                     /locus_tag="VGN19_14050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009774890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEV7197053.1"
                     /translation="MDEVHYLADRFRGAVWEEVIIHLPDDVQVVSLSATVSNAEEFGA
                     WLTEVRGGVDVIVAEHRPVPLWQHMMVGQRMYDLFVDETATPVTGVDATRVNPELLQA
                     IRTLEQHGRWDDGARHGSRSDRHSKGGSGGSARHGKGASGAQGVARQQGRPGGGATRS
                     EVVQRLEREGLLPAITFIFSRVGCEAAVTQLLRDGVRLIPEADGERIRRTVEERVSSL
                     ADEDLGVLGYWDFVDGLTRGFAAHHAGMLPTFREVVEELFTAGRIRAVFATETLALGI
                     NMPARTVVIEKLVKFNGETHADITPAEYTQLTGRAGRRGIDVEGHALVQWNRGLDPLA
                     VAGLASTRTYPLRSSFRPTYNMAVNLVAQVGRETAREILETSFAQFQADRGVVGLARA
                     VRKNEEGLEGYAEAMECHLGDFREYAALRENIARLEKEGAKTRSASWRAEAAVSLEAL
                     RVGDVIRVPAGRRAGYAVVVQPSKSFHGEAPSPTVVTEDHQLRRLTLVDVPTPVAPVT
                     RVKVPPHFNAKSPKARRDLATSLRIAVPHDPPPQPRTRHTGSDESDEIAELRRQLKAH
                     PCHQCLDREEHARWAERWWRLKRETVGLQRKVEGRTNSVARTFDQICTLLAEMGYLTS
                     DGSEVTAQGENLRRLYTEKDLLAAECLRLGVWKRLDPPGLAAIVSSLIHEPRRDEADP
                     SPRLPTDDVAEAVQEMQRLWSMLEDRERDLGLPLTGDPDAGMAWMMHRWASGRRLEEV
                     LRGSDMAAGDFVRRCKQVVDLLGQIADAAGEPVLRRTARTAIDAVMRGVVAADRLD"
     gene            2403..2999
                     /locus_tag="VGN19_14055"
     CDS             2403..2999
                     /locus_tag="VGN19_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018773572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEV7197054.1"
                     /translation="MTFELTGLPADLHRYLQQSRDSLLRALEGLGEYDVRRPLTPTGT
                     NLLGLVKHLAGIELGYLVESVGRPAPVLQWNEDGSVWDGADLWATPDQSRDEIIRLYR
                     QAWELSDASLAEVPLSAPAAVDWWPPEKRHTTFGHLVVRVVAETAQHAGHADILRELV
                     DGQAGRDHDHQGDAEWWASYLARVRSAADAFADVRPPL"
     gene            3009..>3612
                     /locus_tag="VGN19_14060"
     CDS             3009..>3612
                     /locus_tag="VGN19_14060"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7197055.1"
                     /translation="MFDSGAVTAAQLRSLVAELARVDGSDQSQVERIDQISALEALKA
                     AAAAAQARLSVAYADTTTANHAAAGAGARDQGTAVGAEIALARRESPNRGSRHLGLAR
                     ALVGELPHTMRLLSSGAVSEWRATILCRETAALSVDDRLEVDRQLAGALAGMSDRAVE
                     HAARGLAAQLDAASVARRARRAVGERRVTIRPAPDTMTYVT"
BASE COUNT          547 a         1232 c         1303 g          530 t
ORIGIN      
        1 tcatggacga ggtgcactac ctggccgacc ggttccgtgg cgcggtctgg gaggaggtca
       61 tcatccacct gcccgacgac gtccaggtcg tgtcgctgtc ggcgaccgtc agcaacgccg
      121 aggagttcgg ggcgtggctg accgaggtgc gcgggggagt ggacgtcatt gtcgccgagc
      181 accggcccgt cccgctctgg cagcacatga tggtcggtca gcggatgtac gacctgttcg
      241 tcgacgagac cgcgactccc gtgacggggg tggatgcgac ccgcgtgaat cccgagctcc
      301 tgcaagccat ccgcaccctc gagcaacacg gtcgctggga cgacggagcc agacacggct
      361 cacggtcgga ccggcacagc aagggtggtt cgggtgggtc ggctcgtcat ggcaagggtg
      421 cttcgggtgc ccagggcgtg gcgcgtcagc agggccgccc cggtggcggc gccacgcgct
      481 cggaagtggt gcagcgcctc gaacgcgagg ggctgctccc cgccatcacc ttcatcttca
      541 gccgggtcgg ctgtgaggcc gcggtgaccc agctgctgcg ggacggagtc cggctcatcc
      601 ccgaagccga tggtgagcgg atccgtcgca ccgtcgagga gcgcgtgtcg tcccttgcgg
      661 acgaggacct cggggtgctg gggtactggg acttcgtcga cgggctcacc cgcggtttcg
      721 cagcccacca cgcggggatg ctgccgacgt tccgtgaggt ggtggaggag ctgttcaccg
      781 ccggtcggat ccgcgcggtg ttcgccacag agaccctggc gctcgggatc aacatgccgg
      841 cgcgaacggt cgtcatagag aagctcgtca agttcaacgg cgagactcat gccgacatca
      901 cccccgccga gtacacccag ctcacggggc gagccggccg gcgcggcatc gatgtcgagg
      961 gtcacgccct ggtccagtgg aaccgaggcc tggacccgtt ggcggttgcc gggctcgcct
     1021 ccacccggac gtaccccctg cgctccagct tccgtccgac ctacaacatg gccgtgaatc
     1081 tcgtcgcgca agtgggccgg gagaccgctc gggagattct ggagacctcg ttcgcgcagt
     1141 tccaggccga tcgcggagtc gtcggcctgg cccgagccgt tcgcaagaac gaagaagggc
     1201 tcgagggtta cgccgaggcc atggagtgcc atctcggcga cttccgggag tatgccgccc
     1261 tccgggagaa catcgcccgc ctggagaagg agggcgccaa gacccggtcg gcgagctggc
     1321 gggccgaggc cgcggtctcc ctcgaggcgc tgcgggtggg ggacgtcatc cgggtccccg
     1381 ctgggcgcag ggccgggtac gcggtggtcg tgcagccgtc gaagtcgttc cacggtgagg
     1441 cgccgtctcc caccgtggtc accgaggatc accagctgcg cagactgacg ttggtcgacg
     1501 tgcccactcc ggtggctccc gtgacccgag tcaaggtgcc gccccacttc aatgccaaga
     1561 gtccaaaggc tcgccgggac ctagccacgt cgctgcgcat cgcggtcccg catgacccgc
     1621 ccccgcagcc gcgcacgcgg cataccggca gcgatgagag cgacgagatc gcggagctac
     1681 gtcgccagct caaggcgcat ccctgccatc agtgcctgga ccgggaggag catgcccgct
     1741 gggccgagcg ttggtggcgg ctcaagcgcg agaccgtcgg tctgcagcgc aaggtggagg
     1801 gccggacgaa ctctgtcgcg cggaccttcg accagatctg cacgctgctc gcggagatgg
     1861 gctatctgac ctcggacggc tccgaggtca cggcgcaggg cgagaacctg cgacggctct
     1921 acaccgagaa ggacctgctg gcggccgagt gcctacgcct gggcgtctgg aagcggctcg
     1981 acccacctgg gctcgccgcc atcgtctcct ccctgatcca cgagccgcgc cgcgacgagg
     2041 ccgacccctc acctcggctg ccgaccgacg acgtcgccga ggcggtccag gagatgcaga
     2101 gactgtggtc gatgctcgag gaccgcgagc gagacctggg actgccgctg accggcgacc
     2161 ccgatgccgg gatggcctgg atgatgcacc ggtgggccag cggtcggcgc ctggaggagg
     2221 tacttcgtgg ctctgacatg gctgccgggg acttcgtccg ccggtgcaag caggtggtgg
     2281 acctgctggg tcagatcgcc gacgcggccg gtgagccggt gcttcggcgc acggcgcgga
     2341 cagcgatcga cgcggtgatg cgcggagtcg tggctgcgga tcgcctcgac tagcgtcgcc
     2401 ccatgacgtt cgagctgacc ggacttcctg ccgacctgca ccggtacctg caacagtcgc
     2461 gggactcgct cttacgcgcc ctggaggggc tgggggagta cgacgtcagg cgtccgctga
     2521 cgccgactgg caccaacttg ctcgggctcg tcaagcatct ggcggggatc gagctcggct
     2581 atctcgtcga gtcggtgggc cgcccggctc cggttctgca atggaacgag gacggcagcg
     2641 tctgggacgg cgccgacctg tgggccacgc cggaccagtc ccgcgatgag atcatcaggc
     2701 tgtaccgcca ggcctgggag ctcagcgacg cctcgctcgc cgaggtgccc ctgagcgcgc
     2761 cggccgcggt cgactggtgg cccccggaga agcgccacac gaccttcgga catctcgtcg
     2821 tgcgggtggt agccgagacc gcccagcacg ccggtcacgc cgacatcctg agagagctgg
     2881 tggacggcca ggccggtcgc gaccacgacc accagggcga tgccgagtgg tgggccagct
     2941 acctggcacg ggtccggtcc gcggccgacg ccttcgccga tgtcagacct cccctctagt
     3001 ttggacgtat gttcgattcg ggggcggtga ccgccgcgca gctgaggtca ctcgtggccg
     3061 agctggcccg cgttgacggg tccgaccaat cgcaggtcga gcggatcgat cagatctctg
     3121 cgctggaggc gctcaaggca gcggccgcgg ccgcgcaggc caggctctcg gtggcgtacg
     3181 ccgacacgac aacggccaac cacgcggcgg caggagcggg agcccgagac cagggcaccg
     3241 cggtcggcgc cgagatcgcc ctcgcgcgac gcgagtcccc aaaccgaggg tcgcgacacc
     3301 tgggactggc gcgcgccctg gtcggcgagc tgccgcacac catgaggctg ctgtcgagcg
     3361 gcgcggtgag tgagtggcgc gcgacgatcc tgtgtcgtga aacggcggcg ctgtccgtcg
     3421 acgaccgtct cgaggtcgac cgccagctcg cgggcgccct cgcaggcatg tcggaccgcg
     3481 cggtcgagca tgccgcgcgc ggccttgccg cgcagctcga tgccgcctcc gtggcccgtc
     3541 gcgctcgaag ggccgtcggc gagcgccgcg tcaccatccg ccccgcaccc gacacgatga
     3601 cctatgtcac cg
//
LOCUS       DASYFY010000694         2060 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1259629, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000694 DASYFY010000000
VERSION     DASYFY010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259629"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..346)
                     /locus_tag="VGN19_14065"
     CDS             complement(<1..346)
                     /locus_tag="VGN19_14065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEV7197056.1"
                     /translation="MNRVLSGIAPSGSFTLGNYLGALRHWVSFQDGHDAFYCVVDLHA
                     LTTEVGEANLRANTLDAALNLLAIGLEPERSTLFVQSQVPEHTRLTWLLECTTAMGEL
                     RRMTQFKDKGQGQ"
     gene            413..1222
                     /locus_tag="VGN19_14070"
     CDS             413..1222
                     /locus_tag="VGN19_14070"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HEV7197057.1"
                     /translation="MVYAVSTPAFEGPIDLLLHLVSSHEVDVLDIPLLPVVDAFVAIL
                     TEERELIDFNQLSEFLLVASILIELKSQRLLPGPESVEDDEDLIGWEERDLLLSRLLE
                     CRAYAAAADVFVALTEQASRSVPREVGLDDGFVVHAPDLLAGVTPEDLAQAYLHGSAE
                     RPVPRVDLSHVTVDTVSVSEAVTELLSLSNLERTSSFRELVRVCRTRMDVIVRFLALL
                     ELCKMGRVTLGQGTTFGDLQISWLERDELAGVASGRGLAELGGYEIDTYEG"
     gene            1236..1832
                     /gene="scpB"
                     /locus_tag="VGN19_14075"
     CDS             1236..1832
                     /gene="scpB"
                     /locus_tag="VGN19_14075"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEV7197058.1"
                     /translation="MENAELGRTIEAILLVAVEPIAPQLLAELVEVPVEQVEEVLTEL
                     AQSYEHEQRGFVLARIAGGARLQTHPEMAPYVERFANREVSHRLSTAALETLAIVAYR
                     QPVSRGQISALRGVNVDGVSRLLEQRGYIEVVGHADGPGQPALFGTTDLFLERLGLDS
                     LEQLPAVEDFLPGPEVAGEFERDLQSALGLGIEASDDA"
     gene            1768..>2060
                     /locus_tag="VGN19_14080"
     CDS             1768..>2060
                     /locus_tag="VGN19_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013117157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HEV7197059.1"
                     /translation="MSSSATCRARSVSASRPPTTPEPEPPEGERLQKVLARVGFGARR
                     RCEELIAAGRVTVDGAVATLGRRIDVATARVEVDGVLVPVAPDLVYYLLNKPAG"
BASE COUNT          300 a          676 c          739 g          345 t
ORIGIN      
        1 cctggccctg tcccttgtcc ttgaactggg tcatgcggcg cagttcgccc atggccgtgg
       61 tgcactcgag caaccaggtc agacgggtgt gctcggggac ctggctctgg acgaacaggg
      121 tggagcgctc tggctcgagg ccgatcgcca ggagattgag ggcggcgtcg agcgtgttgg
      181 cgcgcaggtt cgcctcgccg acctcagtcg tcagggcgtg caggtcgacc acgcagtaga
      241 aggcgtcgtg gccgtcctgg aaagagaccc agtggcgcag ggccccgagg tagttcccca
      301 aggtgaagct gcccgaaggc gcaatgccgg aaaggaccct gttcatgggc cgccatggta
      361 gggggcacca ggggtgcgcc gaacccttcg tcccgttcga taacgtcggt gagtggtcta
      421 cgcggtctcc actccggcct tcgaaggtcc gatcgacctc ctcctccacc tcgtgtcgtc
      481 acacgaggtg gacgtgctcg acattcccct gctgccggtc gtcgacgcct tcgtggcgat
      541 cctcaccgaa gagcgcgagc tgatcgattt caaccagctg tccgagttcc tgctcgtggc
      601 ctccatcctc atcgagctga agtcacagcg tctgttgccc ggtccagaat ccgtcgagga
      661 cgacgaggac ctgatcggct gggaggagcg cgacctgctg ctgtcccggc tcctcgagtg
      721 cagggcctac gccgcagccg ccgacgtgtt cgtcgcgctg accgagcagg cgtcgcgctc
      781 ggtgccccgt gaggtcggac tggacgacgg tttcgtggtg cacgcgccgg acctgctggc
      841 cggcgtcacg cccgaggacc tcgcccaggc ctacctgcac ggttcggcgg agcgcccggt
      901 gccgcgggtc gacctttccc acgtcaccgt cgacacggtc tcggtatccg aggccgtcac
      961 cgaactgctc tcgctgtcga acctggagcg gacgtcgtcg ttccgggagc tggtccgggt
     1021 gtgccgcacc cgcatggacg tgatcgtgcg cttcctggca ctgctcgagc tctgcaagat
     1081 gggccgggtg acgctcggcc agggcacgac cttcggcgac ctgcagatct cctggctcga
     1141 gagggacgag ctggcgggtg tggccagcgg acgcggcctg gctgagctcg gtgggtacga
     1201 gatcgacacc tacgagggat gagggcttga atcagatgga gaacgcagag ctgggccgca
     1261 ccatcgaggc gatcctgctg gtggcggtgg agcccatcgc tcctcaattg ctggccgaac
     1321 tggtggaagt gccggtggag caggtggagg aagtgctcac ggagctggcg cagtcgtacg
     1381 agcacgagca gcgcggcttc gtgctcgccc gcattgccgg cggtgcccgg ctgcagacgc
     1441 atcccgagat ggcgccctac gtcgagcgct tcgccaaccg cgaggtgtcg caccgactgt
     1501 cgacggccgc cctcgagacg ctggccatcg tggcctaccg ccaaccggtc tcacgcgggc
     1561 agatctcagc gctgcgcggc gtcaacgtcg acggcgtgag ccgtctgctg gagcaacggg
     1621 gctacataga ggtggtgggc cacgctgacg gtccgggcca gccggcgctc ttcggcacca
     1681 cggatctctt cctggagcgg ctcgggctcg actcgttgga gcagctgccg gccgtggagg
     1741 acttcctgcc cgggcccgag gtcgcgggtg agttcgagcg cgacctgcag agcgcgctcg
     1801 gtctcggcat cgaggcctcc gacgacgcct gagccggagc cgcccgaggg cgagcggctc
     1861 cagaaggtcc tggcccgcgt cggcttcggg gcgcgccggc gctgtgaaga gctgatcgcc
     1921 gccggccggg tgacggtgga cggcgcggtc gccaccctgg gccggcgcat cgacgtggcc
     1981 actgcgaggg tcgaggtgga cggcgtcctg gtaccggtgg cgccggacct cgtctactac
     2041 ctcttgaaca agccggccgg
//
LOCUS       DASYFY010000695         2126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1365434, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000695 DASYFY010000000
VERSION     DASYFY010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1365434"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..312)
                     /locus_tag="VGN19_14085"
     CDS             complement(55..312)
                     /locus_tag="VGN19_14085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6458 family protein"
                     /protein_id="HEV7197060.1"
                     /translation="MYIGLGIFLIVVGAILTFALHASVGAVDLNAIGWICMAAGVLAI
                     VLSLIVTRRAVGGGYSSRRVSHTDPATGTRVDEVDVDRREI"
     gene            499..1845
                     /locus_tag="VGN19_14090"
     CDS             499..1845
                     /locus_tag="VGN19_14090"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEV7197061.1"
                     /translation="MGAVLTQLRPVATCAASEALDTVHRALDQVEGVPGLTDPTRLIG
                     EADRAIARLQALRLDLVRAADRAQVSAASGASGTAAWLASATRADTASASRDVKLAAA
                     LSDSLPATREALAQGTLSTAHAQVIATATDRLPESLTDRERSSIESALVERAKLVDPG
                     TLRKAARRALAVAERSQAEIDAHEDEVVRSEEDRALARTRLSWHDNRDGTLSGHFTVP
                     ILAGHMLVKVIQQLASPRRFAQRAAQAARDDAATRGETLSTSRTRERVWEAFRTDSDQ
                     WTHRYGSAFAELLEHLPTDRLSGKVNATVLVTMDADTLRDPGRAKVSETDTGTVLSAG
                     QARRLACSAGLVPLVLGGTSHPLDLGRTGRCFTEHQRTALAARYNACAAEGCDRPYAW
                     TELHHQDPWSHGGATDLHLAVPLCGHHHRLIHHAGFDHRIDTDTRGVKSVTFHRRS"
     gene            complement(1875..>2126)
                     /locus_tag="VGN19_14095"
     CDS             complement(1875..>2126)
                     /locus_tag="VGN19_14095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006888289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase"
                     /protein_id="HEV7197062.1"
                     /translation="TPESLLRDGAGSAKGLSRTLTLDPAAGDGVLHISVQAASCDGDP
                     ETGDVPEHAACHLYQQDWGIPVVLVDGATDELLLDLRGV"
BASE COUNT          330 a          733 c          727 g          336 t
ORIGIN      
        1 ggtcactgcc ccgctggggc agcgaccttt cgcttgtggt gagtgcgctc gtggtcagat
       61 ctcgcgacgg tcgacgtcga cctcgtcaac tcgcgttccg gtggcggggt ccgtgtggct
      121 gacccggcgc gaggagtagc cgccgcccac cgcccgtcgg gtgacgatga gggacagcac
      181 gatggccagc acgccggcgg ccatgcagat ccagccgatg gcgttgaggt cgactgcacc
      241 gacagacgcg tggagggcga aggtcaagat cgcccccacg acgatgagga agatgcccag
      301 tccgatgtac attctcgctc ctgtggtttg cgggttcggg gaatgacccg gtgcgtcgac
      361 tgtagcccgt cggggccctg acctgcggga acgccagggt tggatccgtt cgcggggagt
      421 cgacggtttt ggttggcgat gacctgcgtt ggcgtacctc tgttgtgatt cgaacatatg
      481 ttcgatactg tggatgccat gggggcagtt ctcactcagt tgcgaccagt cgcaacgtgc
      541 gcggccagcg aggcgctgga cacggtgcac cgtgccctcg atcaggtcga gggcgtgcca
      601 ggcctcacag atcccaccag gctcatcggc gaggctgacc gggccatcgc gcggctccag
      661 gcccttcggc tcgatctggt gcgggcggcc gaccgagctc aggtgtcggc cgcgtcaggc
      721 gcgtcgggga ccgcggcgtg gctggcatcg gcgacgcggg ctgacactgc ttcggcatcc
      781 cgcgacgtca agctggcggc ggccctcagc gactccctgc cggccacgcg agaggcactc
      841 gcgcagggca cgctctccac agcgcacgcc caggtcatcg cgacggcgac ggatcgactg
      901 cccgagtcgc tgaccgaccg ggagcgctcg agcatcgagt ccgcactggt cgagcgcgcc
      961 aagctggtcg atcccgggac cctgcgcaag gcggcgcggc gcgcactcgc ggtggctgag
     1021 cgcagtcagg ccgagatcga cgcccacgag gacgaagttg ttcggtctga agaagaccgc
     1081 gccctggctc gcacccggct ctcgtggcac gacaaccgcg acggcacgct gagcggccac
     1141 ttcaccgtcc cgatcctcgc tgggcacatg ctggtgaagg tgatccaaca gctggcgtca
     1201 ccgcgccgct tcgcccagcg agcggcacag gcagcccgag acgacgccgc cacccgcggc
     1261 gagactctct cgacgtcccg cacgcgcgag agagtatggg aggcgttccg caccgactcc
     1321 gatcagtgga cgcaccgcta cgggtcggcg ttcgccgagc tgctcgagca tctgcccacc
     1381 gatcggctct ccggcaaggt caacgccacc gtcctggtga ctatggacgc ggacacgctc
     1441 cgtgacccgg gccgggccaa ggtgtccgag actgacacgg gcacagtcct cagcgcgggg
     1501 caggcccgcc gcctcgcgtg ttctgcgggg ctggttccgc tcgtgctggg tggcacctcg
     1561 catcccttgg acctgggtcg caccgggcgc tgcttcactg agcaccagcg aactgcgctt
     1621 gccgcccgct acaacgcctg cgcggccgag ggttgcgacc ggccgtatgc ctggaccgag
     1681 ctccatcacc aggatccgtg gtcacatggc ggcgccacgg acctgcacct cgcggttccg
     1741 ttatgcgggc atcaccatcg actgatccac cacgccgggt tcgaccatcg catcgacacc
     1801 gatacccgag gcgtcaagtc ggtcacgttc catcgacgat cctgacgggc gctcgcctgc
     1861 cggaatgccg ctggtcacac gccgcgcagg tccagaagta gctcgtcggt ggcaccgtcg
     1921 accagcacga cgggaatccc ccagtcctgc tggtacaggt ggcaggccgc atgctcgggc
     1981 acgtcgcctg tctccgggtc gccgtcgcag gatgctgcct ggacggagat gtgcaggaca
     2041 ccatcgccgg cagcggggtc gagagtgagc gttcgactca gccccttggc actcccggca
     2101 ccgtcgcgca acaggctctc cggagt
//
LOCUS       DASYFY010000696         3160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1102958, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000696 DASYFY010000000
VERSION     DASYFY010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102958"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..879)
                     /locus_tag="VGN19_14100"
     CDS             complement(172..879)
                     /locus_tag="VGN19_14100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017488850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7197063.1"
                     /translation="MSIDRGQAHPDRWPYTVPVVRQILDQGLALQPGATVLVGPNGAG
                     KSTVVEAVAAAWGRRMSAFREDWLQQAVAAPSDEDSDLHRSLRLTFTRGGPTGGLFLR
                     AERLHAQAHGFTHRGRWSERVEGPLLARSHGEGFLQVLAGMVAEPGLYVLDEPESALS
                     FDSCLVLLAIMNDMLAAGSQILLATHSPILAGLPGAHLRQLDDRGITPVSYDSTDLVT
                     SWRQFLNNPDAYLRHLK"
     gene            complement(1154..1624)
                     /locus_tag="VGN19_14105"
     CDS             complement(1154..1624)
                     /locus_tag="VGN19_14105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018189495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEV7197064.1"
                     /translation="MADEADQHDSVGAWAKKYHLTSRALIESTLREHALGPTQWYVLH
                     QLVHAGPTLQRDLGQLLQIERATLSGIIATLVRKGLVTQTPDAVDQRQRLLSITEAGQ
                     NLWTELPDPVALALAVSFDGADENDLAVTRRVLQDAVRRLEDHLAAQDAAGRGR"
     gene            complement(1634..2389)
                     /locus_tag="VGN19_14110"
     CDS             complement(1634..2389)
                     /locus_tag="VGN19_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020075877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7197065.1"
                     /translation="MSVERIALVTGANQGVGLEVATKLAANGATVYLGSRDLARGEAA
                     VAGIPTGATAIQLDVTDLASIAAAAERIRAEHGRLDLLVSNAGISNTRTGSATPGEMA
                     ASSTASTASLDEVRAIWDVNVFGVLAVYQAMLPLLRASSDARIVNVSSGVGSLASNAD
                     PSFPYRTIYGPGYAASKTAENAMTLAMMIELEQTDIKINLVSPGFTSTALNNFAGTES
                     VEDGSREVVRVALLGPDGPTNTFTRWEDTTIPW"
     gene            2900..>3160
                     /locus_tag="VGN19_14115"
     CDS             2900..>3160
                     /locus_tag="VGN19_14115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197066.1"
                     /translation="MPESFTDEVQVLSGTHDNLRWQIWAAGTSSDLMTRLQVFDGDRR
                     VAWSGFGGPALHAGQKVNEWRGRTDDQPYFVMARAAPEVSRLV"
BASE COUNT          473 a         1022 c         1132 g          533 t
ORIGIN      
        1 catggccatc tgcattgtta tcggtgcgtt tctcctttat ccagtggtgc ttttcctagt
       61 gatgctgctt ttcgcagtag gcggctgact cttaagccgc cttcagagct actgggatgg
      121 ccggctcggt gagggatcca caaccggaag gacgttcctg ctgtcgcgca tctacttgag
      181 atgccgcagg taggcgtcgg gattgttgag gaactggcgc caggatgtga cgaggtcggt
      241 gctgtcgtag gagacgggtg tgatgccgcg gtcatcgagc tggcgcaagt gcgctccggg
      301 cagcccggcc aggatcggcg aatgagtggc caacaggatc tggctgccag cggccagcat
      361 gtcgttcatg atcgccagca gcaccagaca gctgtcgaag gacagcgccg actcgggctc
      421 gtcgaggacg tagagaccgg gctcggcgac cattccggcg aggacttgaa ggaaaccctc
      481 gccgtggcta cgggccagca gcggcccctc gacccgctca ctccaccgtc cccggtgggt
      541 gaagccgtga gcctgggcgt ggaggcgttc ggctcgtagg aacaagccgc cggtcgggcc
      601 gccccgcgtg aatgtcagcc gcagcgagcg gtgcaggtcc gaatcctcgt cggagggggc
      661 ggcgaccgcc tgctgcagcc aatcctcgcg gaacgctgac atgcgccggc cccaggccgc
      721 ggcgactgcc tccacaaccg tggacttgcc cgcaccgttc gggcccacga gcacggtagc
      781 cccgggctga agcgccagac cttgatccaa gatctgacgc accaccggaa cggtgtaggg
      841 ccagcggtcg gggtgggcct gaccgcggtc gatcgacaac tcagtgacgg gtgctcccgg
      901 ctgccgacta cctgctggcc gagccgcgtt ccgcatcccg gtgttatagc cgctccggcc
      961 gacggtccag cggaccgccg aggcgtctgg tggctcgcgc gctgaacagg ccgtgtcacg
     1021 acgtcccgat caagcgttgc ggccagcacc ttccttcgtg ccggaaggcc tacgttcact
     1081 gtgacgacgg atgggcccta cgttctccag ttcgacgttg acgcggccct gcctgcgctc
     1141 ggggcgtagc caattagcgt ccccgcccgg ccgcgtcctg cgctgccagg tggtcctcga
     1201 gccgccggac cgcgtcctgc agcacccggc gggtgacggc gaggtcgttc tcgtcggcgc
     1261 cgtcgaatga gacggccagc gccagcgcga cggggtcggg cagttcggtc cacaggttct
     1321 gtccagcctc ggtgatgctc agcagccgct ggcgctggtc gaccgcatcg ggcgtctggg
     1381 tgacgaggcc cttgcggacc agggtggcaa tgatgccgct cagcgtcgcg cgctcgatct
     1441 gcaggagttg gccgaggtcg cgctgcaggg tcggtcctgc gtggaccagc tggtggagca
     1501 cgtaccactg ggtcggtccg agggcgtgct cgcgcagcgt cgactcgatg agggcgcgcg
     1561 aggtgaggtg gtacttcttc gcccacgccc cgaccgagtc gtgctggtcc gcctcgtcag
     1621 ccatccgcca tggctaccac gggatggtgg tgtcctccca acgcgtgaag gtgttcgtcg
     1681 gcccgtcggg gccgaggagc gcgacgcgga cgacctcgcg ggagccgtcc tcgaccgact
     1741 cggtgcctgc gaagttgttg agcgcggtgc tggtgaagcc cggggagacg aggttgatct
     1801 tgatgtcggt ctgctcgagc tcgatcatca tcgccagcgt catggcgttc tccgccgtct
     1861 tcgacgcggc gtacccgggc ccgtagatcg tgcggtaggg aaagctcggg tcggcgttcg
     1921 aggccagcga gccgaccccg ctcgacacgt tgacgatccg agcgtcggac gacgcgcgca
     1981 ggagcggcag catcgcctgg tagacggcga gcacgccgaa gacgttgacg tcccagatgg
     2041 cgcggacctc gtcgagcgag gcggtgctcg cggtcgacga cgcggccatc tccccgggcg
     2101 tcgcgctgcc ggtgcgggtg ttcgagatgc cggcattgct gacgagcagg tcgagacggc
     2161 cgtgctcggc gcggatccgc tcggccgcgg cagcgatcga cgcgaggtcg gtgacgtcga
     2221 gctggatcgc ggtcgcccct gtcgggatgc cggcgacggc ggcctcgccg cgggcgaggt
     2281 cgcgcgagcc gaggtagacg gtggcgccgt tggcggcgag cttggtggcg acctcgaggc
     2341 cgaccccctg gttggcaccg gtgaccaggg cgatgcgctc tacggacacg tgttcccctt
     2401 ttcgtctgct acctttcgat tatcgtcagg tgcctgacga atagcaaggt cagcaggacg
     2461 ccctcttcac gctggcacaa gaacgaggct ggcctccagc ttcggggcca gctcacgctc
     2521 cgacgcagcc gctcgcccgg tcagaaggcc tatcgcgatg gccgtgacga gccggtaggc
     2581 ggcgtcctcg cctcacgcgc gccggccggg cgcacggctg accgtccggt tgccgatccc
     2641 tgaacggcac tctcgcctgg cgaattggtg cccctacgcg gcgcgtgtgg gagggcggcg
     2701 ggatcggagg tcaccgtggt cagcagcgcc cctgagcgca gcttcctgcg acggcggccc
     2761 cctgggcagg ggatcagcag acctcgcctt cttaagactg ggacccgtcg cgggggcgat
     2821 atcctctggc ggattggcta caacggaatc tcaatggccg tggcgtcgta cgggccgggt
     2881 ggctagccga gggagcgtcg tgccggaatc cttcaccgac gaagtccagg tcctctccgg
     2941 aacacacgac aacctgcgat ggcaaatatg ggcggccggc acgtcgagcg acctgatgac
     3001 gaggttgcaa gtcttcgacg gtgatcgtcg cgtggcctgg tcgggcttcg gaggaccggc
     3061 tttacacgcg ggccaaaaag tcaacgagtg gcgcggccgt accgacgacc agccgtactt
     3121 cgtgatggcc agagccgctc cggaggtcag ccggctggtg
//
LOCUS       DASYFY010000697         2131 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1154609, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000697 DASYFY010000000
VERSION     DASYFY010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1154609"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1568)
                     /locus_tag="VGN19_14120"
     CDS             complement(<1..1568)
                     /locus_tag="VGN19_14120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018768704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-requiring protein"
                     /protein_id="HEV7197067.1"
                     /translation="MSTTVADYVLTRLRQWGVDHVFGFAGDGINGLLAAWERADDRPR
                     FVQARHEEMAAFEACGYAKLSGRVGVCVATSGPGAIHLLNGLYDAKLDHVPVVAIVGQ
                     TARSAMGGAYQQEVDLLSLFKDVAGQYCQMVTVPEQLPNVLDRALRIAAAERTVTAVI
                     IPSDVQELEYTPPQHSFKMVPSSLDQTFAAPVPTSSDLERAADVLNAGSKVAILVGQG
                     ARAAAAEVTEVAELLGAGVAKALLGKDVLSDELPWVTGSIGLLGTRPSYELMTDCDTL
                     LVVGSNFPYTQFLPPFEEGTSAVRAVQIDVDPTMVGLRYPFEVNLVGDAQRTLEALRP
                     LLRRQEDRSWRDTVEANVARWWQVMDARGQVSADPINPEHVFAQLSPLLPADVMIAAD
                     SGSGTNWYARHVKMRGTMRGTLSGTLATMGCGVPYAIGAKFAHPDRPALALVGDGAMQ
                     MNGLAELITIAKYWPDWTDPRLVVSVLQNDDLNQVTWEMRAMEGSPQFLPSQQLPSID
                     YAAFARTLGLHAIYV"
     gene            complement(1585..>2131)
                     /locus_tag="VGN19_14125"
     CDS             complement(1585..>2131)
                     /locus_tag="VGN19_14125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010146053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197068.1"
                     /translation="MRRLAKQTSTLAELLTERAPDWHPPQLDVDALVQTHCHQHAILG
                     DDADTALMKAAGIDADRLRSGCCGLAGNFGFEKGHYEVSRAAGERVLLPRVRNAGTAT
                     AILADGFSCRTQIDQGDTGRTALHLAQLLASGLNDAARGQRTHPAPASTAATAVPSNT
                     EPTTERGGLSCEPFPTSGFLG"
BASE COUNT          298 a          699 c          802 g          332 t
ORIGIN      
        1 acgtagatgg cgtgcagccc gagggtgcgg gcgaacgcgg cgtagtcgat gctgggcagc
       61 tgttgggagg gcaggaactg cggtgagccc tccatcgccc gcatctccca ggtgacctgg
      121 ttgaggtcgt cgttctgcag aacggacacg accagccgcg ggtcggtcca gtccggccag
      181 tacttggcga tggtgatcag ctcggccagc ccgttcatct gcatcgcccc gtccccgacc
      241 agggccagcg cgggccggtc ggggtgggcg aacttggcgc cgatggcgta cgggacgccg
      301 cagcccatgg tcgccagggt ccccgacaac gtgccccgca tcgtcccgcg catcttgacg
      361 tgccgcgcgt accagttcgt gcccgacccc gagtcggccg cgatcatcac gtcggcgggc
      421 agcagcgggg acagctgggc gaagacgtgc tcggggttga tggggtcggc gctgacctgg
      481 ccccgggcgt ccatcacctg ccaccagcgg gcgacgttgg cctcgacggt gtcgcgccag
      541 gaccggtcct cctgacgcct cagcagcggg cgcagcgcct ccagcgtccg ttgggcgtcc
      601 ccgacgaggt tgacctcgaa cgggtagcgc agcccgacca tggtcgggtc gacgtcgatc
      661 tggacagcgc ggaccgcgct ggtgccttcc tcgaaggggg gcaggaactg ggtgtaggga
      721 aagttggagc cgacgaccaa cagggtgtcg cagtcggtca tcagctcata cgagggccgg
      781 gtcccgagca gaccgatgga tccggtcacc cagggcagct catcggagag gacgtccttg
      841 ccgagcagcg ccttggcgac gccggcgccg agcagctcgg cgacctcggt cacctcggcg
      901 gccgcggccc gcgcgccctg gccgacgaga atggccacct tgctgccggc gttgaggacg
      961 tccgccgccc gctccaggtc gctcgaggtg gggaccgggg cggcgaaggt ttggtcgagg
     1021 ctggacggga ccatcttgaa cgagtgctgc ggcggcgtgt actccagctc ctgcacgtcg
     1081 gacgggatga tcaccgcggt gacggtccgc tcggccgcgg cgatccgcag cgcccggtcc
     1141 aggacgttgg gcagctgctc gggcacggtc accatctggc agtactgacc ggccacgtcc
     1201 ttgaacaggc tgagcaggtc aacctcctgc tggtaggcgc cgcccatcgc ggaccgggcg
     1261 gtctgcccca cgatcgcgac caccgggacg tggtccagct tggcgtcgta caggccgttg
     1321 agcaggtgga tcgcgccggg cccgctggtg gcgacgcaga ctccgacccg gccgctgagc
     1381 ttggcgtacc cgcaggcctc gaaggcggcc atctcctcgt gccgggcctg aacgaagcgg
     1441 ggccggtcgt cggcgcgttc ccacgcggcc agcaggccgt tgatgccgtc tccggcgaac
     1501 ccgaagacgt ggtcgacgcc ccactgacgc aaccgggtca ggacgtagtc ggcgacggtg
     1561 gtgctcacgg gtggctcctt tgcctcagcc cagaaatccc gaggtcggga acggttcgca
     1621 tgacaggcct cctcgttcag tggtcggttc agtgttcgat gggacggcgg ttgcggccgt
     1681 agacgcgggc gcgggatggg tgcgctggcc tcgggccgcg tcgttgaggc ccgaggccag
     1741 cagctgggcg agatggagtg cggtgcgtcc ggtgtcgcct tggtcgatct gggttcggca
     1801 gctgaacccg tcggcgagga tggccgtggc ggtgccggcg ttacgcaccc gtggcagcag
     1861 tactcgttcg ccggcggcgc gggaaacctc gtagtggccc ttctcgaagc cgaagttccc
     1921 ggccagcccg cagcagccgg aacggagccg gtcggcgtcg atcccggcgg ccttcatcag
     1981 ggcggtgtcg gcgtcgtcgc cgaggatggc gtgctggtgg cagtgggtct gcaccagggc
     2041 gtcgacgtcg agctgcgggg ggtgccagtc gggggctcgt tcggtcagca gctcagccag
     2101 ggtggacgtc tgcttggcca ggcgccgcat a
//
LOCUS       DASYFY010000698         2099 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_50224, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000698 DASYFY010000000
VERSION     DASYFY010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50224"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..716
                     /locus_tag="VGN19_14130"
     CDS             <1..716
                     /locus_tag="VGN19_14130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="B12-binding domain-containing radical SAM
                     protein"
                     /protein_id="HEV7197069.1"
                     /translation="LYFLIGLPTELDEDVLGIAELGARCVEIGRRHQKSVTVVASVGG
                     FVPKPHTPFQWFGQDTAAELERKVVLLRDQARRTRGLTIRWHDPAASVAEGLASRGDR
                     RMGAVIERVWRAGGTFQEWSERFELSLWESALAAEGLSTDEVCHRERAGDEPLPWDHI
                     SAGLHRDFLWGDWQDALARVTVEDCRWTPCYDCGACTGFGLEHVVASPVPPAGGSQGT
                     GQDLTGGDRIPVRLGSRAP"
     gene            706..1509
                     /locus_tag="VGN19_14135"
     CDS             706..1509
                     /locus_tag="VGN19_14135"
                     /inference="COORDINATES: protein motif:HMM:TIGR03936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03936 family radical SAM-associated protein"
                     /protein_id="HEV7197070.1"
                     /translation="MLPDEGRRLRLRFTKAGKIRFTSHRDVARMWERALRRSRLPVAY
                     SQGFAPHPLVSFGLALPTGCESHGEYLDVHLGPAAPEEIPAARLPGTLTSLLPAGIDV
                     TGAALVDKAEGSLQQEVASCDWELEVLGVPGEELKERVDETLAAPILMVRRERKGRQV
                     EDDIRPAILALSVTSPNGHLRAELATHPRGVRPVDLLAALGTGTVPGRACRTHQWIER
                     NGARFEPLPVSEPGTGADATQHARRDFPHVRDGNQPDPGGSPPGGSGER"
     gene            1610..>2099
                     /locus_tag="VGN19_14140"
     CDS             1610..>2099
                     /locus_tag="VGN19_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015771929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HEV7197071.1"
                     /translation="MPLVRPGAAAPPEQGAVVAGPEGGARESVDELAKPARSRRRSGR
                     ERRSKQVGRYLVCVHVQPHMTQIAMLEGRTLVEHYVSRAADDTNQIDGNVYRGRVQNV
                     LPGMEAAFVDIGIPKNAVLYRGDVRYDRDDIEGGASQQPRIEDVLKAGQVILCQVTKN
                     PIG"
BASE COUNT          321 a          737 c          774 g          267 t
ORIGIN      
        1 agctctactt cctgatcggc ctgcccaccg agctcgacga ggacgtcctc ggcatcgccg
       61 agctcggggc gcgctgcgtg gagatcggcc gtcgccacca gaaatcggtg acggtggtgg
      121 cctcggtggg gggattcgtg cccaagccgc acacgccgtt ccagtggttc gggcaggaca
      181 cggcggccga gctcgagcgc aaggtcgtgc tgctgcgcga ccaggcccgt cgcacgcgcg
      241 gcctcaccat ccgctggcac gacccggccg cttccgttgc cgaggggctg gcgagccggg
      301 gcgaccgtcg catgggcgcc gtgatcgagc gggtctggcg cgcgggcggc accttccagg
      361 agtggagcga gcgcttcgag ctgtcgctgt gggagtcggc cctggcggcc gagggcctca
      421 gcaccgacga ggtgtgccac cgggagcggg cgggcgacga gccgctcccc tgggaccaca
      481 tctcggccgg gctgcaccgc gacttcctct ggggtgactg gcaggacgcg ctggcccggg
      541 tgaccgtcga ggactgccgc tggaccccct gctacgactg cggcgcctgc accgggttcg
      601 gcctggagca cgtcgtggcg tcgccggtac cacccgcggg tggcagccag ggcaccggcc
      661 aggacctcac gggcggggac cggataccgg tccgcctggg cagccgtgct ccctgacgag
      721 ggacgccgcc tgcgcctgcg cttcaccaag gccggcaaga tccgcttcac cagccaccgg
      781 gacgtggcac gcatgtggga acgggcattg cgacggagcc ggctccccgt ggcctactcg
      841 caggggttcg cgccccaccc cctggtcagt ttcgggttgg ccctgcccac cggttgcgag
      901 tcgcacggcg agtacctgga cgtccacctg ggaccggcgg ctcccgagga gatcccggcg
      961 gcacggttgc cggggacgct caccagcctg ctgccggcgg ggatcgacgt caccggtgcc
     1021 gcactggtcg acaaagcgga gggatcgctc cagcaagagg tagcatcgtg tgattgggag
     1081 ctggaggtgc tcggcgtgcc aggtgaggag ctgaaggagc gggtcgatga gacgctcgct
     1141 gctcccatcc tcatggtcag gcgggagcgg aagggtcgtc aagtcgagga cgacatccga
     1201 ccggccatct tggcactgtc cgtgaccagc cccaacggtc acctccgagc ggaactggcc
     1261 acgcatccgc gtggcgtccg cccggttgac ctgctagcgg ccctgggcac cggcacggtg
     1321 cccggacggg cctgtcgaac gcatcaatgg atcgaacgca acggtgcacg gttcgagccg
     1381 ctccccgtga gcgagcccgg gaccggtgcc gacgcgacac agcacgcgag gagggacttc
     1441 cctcatgtcc gagacggaaa tcagccagac cccggagggt cgccccccgg aggcagcggg
     1501 gagcgctagc cccccggacg cggcgcgccc gcccaggccg aagcccaaga tcggggacac
     1561 gcggcccgcg ccggctgcac ccccgccccc gaaggcaccg gcccccgtca tgccgctcgt
     1621 gcgcccgggt gccgccgcgc cgccagagca gggagccgtc gtggcagggc ccgaaggagg
     1681 cgcgcgagag agcgtcgacg agctagcgaa gccggcgcgc agccggcgcc gctcggggcg
     1741 ggagcgccgc tccaagcagg tgggccggta cctggtctgc gtgcacgtgc agccgcacat
     1801 gacccagatc gccatgctcg agggtcgcac gctggtcgag cactacgtgt cccgggccgc
     1861 cgacgacacc aaccagatcg acggcaacgt ctaccgggga cgggtgcaga acgtcctgcc
     1921 gggcatggag gccgcgttcg tcgacatcgg cattcccaag aacgcggtgc tgtaccgggg
     1981 cgacgtgcgc tacgaccggg acgacatcga aggcggggcg tcccagcagc cgcgcatcga
     2041 ggacgtgctc aaggccgggc aggtgatcct gtgccaggtc accaagaacc ccatcgggg
//
LOCUS       DASYFY010000699         3120 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_629156, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000699 DASYFY010000000
VERSION     DASYFY010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3120
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_629156"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1029)
                     /gene="tdh"
                     /locus_tag="VGN19_14145"
     CDS             complement(<1..1029)
                     /gene="tdh"
                     /locus_tag="VGN19_14145"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013494162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008743 - L-threonine 3-dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HEV7197072.1"
                     /translation="MRALVKTHAGPGLELLEVPEPQPGPNDVKIRVLRAGLCGTDLHL
                     EQWDDWAASTVVPPMTIGHEFYGEVVEVGKDVHSVAVGSRASGEGHIVCGTCRNCRAG
                     RRHMCIHTKGIGVNRDGAFADFVVLPASNVWVQPADLDPDLAAVFDPLGNATHTALSF
                     PMAGEDVVITGAGPIGVMAAALARHVGARHVVVTDVSDYRLQLARNAGADLVVNAATS
                     NLREAMATLGMKEGFDVGLEMSGVPSAVEDMLANMNHGGRVAMLGLPKDPFAIDWGRV
                     ITHMITIKGIYGREMYDTWYAMSSMLGTSPVLRERIASVITHRFPAEKWQDAFAAARS
                     GQCGKVIMD"
     gene            1065..1685
                     /locus_tag="VGN19_14150"
     CDS             1065..1685
                     /locus_tag="VGN19_14150"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013772821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEV7197073.1"
                     /translation="MGRYLDVHPVDPQPRAIGQAVRLVQEGGLLAYPTDSGYALGCAL
                     GNQDGKDRIVRIRQLDAGHHFTLVCRDFAQLGQLVHIDNAVFRAIKAATPGSYTFILP
                     ATKEVPRRLLHPKKKTVGVRIPDHPVVQALLAGLGEPLLSSTLILPGEQAPMTEGWVV
                     NEELEHQVDAVIDSGECGAEPTTVVDFSSGGPEVVRVGAGDPAPFS"
     gene            complement(1698..2540)
                     /locus_tag="VGN19_14155"
     CDS             complement(1698..2540)
                     /locus_tag="VGN19_14155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015779457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEV7197074.1"
                     /translation="MSPDTAAYLLNDGSSVPGIGFGTYPLRGEAGIAAIVSALENGYR
                     YLDTAVNYENEAEVGEALRRSGVPREEVRIATKIPGRFHASSLALQSLRDSADRLGVD
                     RIDVGLIHWPNPSQGLYPQAWEALLEARREGLVATVGVSNFTEQHLRRIIDETGVTPA
                     LNQIELHPYFPQPQMRAVHDRLGVRTQAWSPLGKRQAPFDEPPIARAAAGHGVSPGQV
                     ILRWHVQLGSMPLPKSATPTRQRANLDVNDFELSAAEVDAISALARPDGRLFGGDPDS
                     HEEM"
     gene            2605..>3120
                     /locus_tag="VGN19_14160"
     CDS             2605..>3120
                     /locus_tag="VGN19_14160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197075.1"
                     /translation="MADNDHDSTPPNHVQARQSRLAQLATELEHAQLHVPAWLRATSP
                     ENRLPVAFAILAAIVLQLRLPDRYGLQPRWMLPVLELVLLGILTAINPVRLNRTTRFG
                     RLASVAIVAAITMDNGIAAGSLDLHILRGTTGQDALGLLTTGAAIYATNVIAFGVWYW
                     ELDRGGPFVRAA"
BASE COUNT          479 a         1047 c         1082 g          512 t
ORIGIN      
        1 atccatgatg accttgccgc actggccgga gcgggccgcg gcaaaggcgt cctgccactt
       61 ctcagcgggg aagcggtggg tgatgaccga cgcgatgcgc tcacggagca cgggggaggt
      121 ccccagcatc gagctcatcg cgtaccaggt gtcgtacatc tcgcgaccgt agatgccctt
      181 gatggtgatc atgtgagtga tcacccggcc ccagtcgatg gcgaaggggt ccttcggcag
      241 gccaagcatc gctacccgac caccgtggtt catgttggcg agcatgtcct cgaccgcgct
      301 gggaaccccg gacatctcca gcccgacgtc gaagccctcc ttcatgccca gggtggccat
      361 tgcttcgcgc aggttgctcg tggcggcgtt gaccaccagg tcggccccag cattccgcgc
      421 cagctgcagg cggtagtcac tgacatcggt gaccacgacg tgcctggcgc cgacgtgacg
      481 ggccagggcg gcggccatga ctccgatggg gccagcgccc gtgatgacga cgtcctcgcc
      541 cgccatgggg aacgacaacg cggtatgcgt ggcgttgccc aaggggtcga agacggcggc
      601 caggtccggg tcgaggtcag cgggctgcac ccacacgttg gaggccggga ggacgacgaa
      661 gtcggcgaag gcgccgtcgc ggttcacccc gatgcctttc gtatggatgc acatgtgacg
      721 ccgtcctgcg cggcagttcc ggcaggtgcc acagacgatg tggccctcac cggatgcgcg
      781 cgatccgacg gccacggagt gcacgtcctt gccgacctcg accacctcgc catagaactc
      841 gtggccgatc gtcatgggag gcaccaccgt cgaggcagcc cagtcgtccc actgctcgag
      901 gtgaaggtcg gtcccgcaga gtccggcccg cagcacccgg atcttgacgt cgttcggccc
      961 gggctgcggc tcagggacct ccaggagctc gagtccgggg ccggcatggg tcttcactag
     1021 agcgcgcacc cgcccaacat agtgcgcggg catagagtcc tcgcatgggc cgctacctcg
     1081 acgtgcaccc cgtggacccg cagcctcgcg cgatcggcca ggccgtccgg ctggtccagg
     1141 aggggggtct gctggcctat cccacggact cggggtacgc cttgggctgt gccctcggaa
     1201 accaggacgg caaggaccgg atcgtgcgca ttcgccagct cgatgccggg catcacttca
     1261 ccttggtgtg tcgcgacttc gcgcagctcg gtcagctggt gcacatcgac aacgccgtgt
     1321 tccgggccat caaggcggcg acccccggca gctatacctt catcctgccg gcgaccaagg
     1381 aggtgccccg acggctgttg caccccaaga agaagaccgt cggggtgcgc atcccggacc
     1441 atccggtggt ccaggcgctc ttggccgggc tcggcgagcc gttgctctcc agcacgctga
     1501 tccttccggg tgagcaggcc ccgatgacag agggctgggt ggtcaacgag gagctcgagc
     1561 atcaggtcga cgcggtgatc gactcggggg agtgcggcgc cgagccgacg acggtcgtgg
     1621 acttctccag cggtggcccc gaggtcgtgc gcgtcggtgc cggggatcct gcaccgttca
     1681 gctagtcgct ctgccggtca catttcctcg tggctgtctg ggtcaccgcc gaacaggcgg
     1741 ccatcaggtc gagccagagc gctgatggcg tcgacctcag ctgcgctgag ctcgaagtcg
     1801 ttgacgtcga ggttggcccg ctgccgcgtg ggggtcgcgg acttgggcag gggcatcgac
     1861 ccgagctgga cgtgccagcg gaggatgacc tggccggggg agacgccgtg accggcggcc
     1921 gccctggcga tgggtggttc gtcgaagggc gcctgccgct tgcccagcgg gctccacgcc
     1981 tgggttcgca cgcccaggcg gtcgtggacc gctcgcatct gtggctgagg gaagtacgga
     2041 tgcagctcga tctggttcag cgcgggggtg accccagtct cgtcgatgat ccgccgcagg
     2101 tgctgctcgg tgaagttgct gacgccgacg gtggcgacca ggccttcgcg ccgagcctcc
     2161 agcagggcct cccacgcctg cgggtagagc ccctggctcg ggttgggcca atggatgaga
     2221 ccgacgtcga tgcggtccac gcccaagcgg tccgccgagt ctcgaagtga ctgcagcgcg
     2281 agggagctgg cgtggaagcg tccggggatc ttggtggcga tacgtacctc ttcgcggggg
     2341 accccggatc gacgcaaggc ctcacccacc tccgcctcgt tctcgtagtt cacggcggtg
     2401 tcgagatacc gatagccgtt ctcgagggcg ctgacgatgg ccgcgatgcc tgcctcgccg
     2461 cgcagcggat aggttccgaa gccgattccc gggacggacg atccgtcatt gagcaggtat
     2521 gccgcggtgt cagggctcat gcccctcacc gtacggggcg ggtcgccgcg ccggatccgg
     2581 atggttgtgg tcgatacttc ggacatggcc gataacgacc acgacagcac gccgcccaac
     2641 cacgtgcagg cgcgccagtc ccgactggcc cagctcgcca cggagctcga gcacgcccag
     2701 ctgcatgtgc ctgcatggct gcgcgcgaca agccccgaga accgtcttcc ggtggctttc
     2761 gcgatcttgg ccgcgatcgt ccttcagcta cgcctacccg accgatacgg gctccagccc
     2821 cgctggatgc tgccggtcct cgagctcgtc ctgctcggca tactgacggc catcaacccg
     2881 gtcaggctga accggacgac ccggttcgga cggttggcca gcgtggcgat cgtcgccgcg
     2941 atcacgatgg acaacggcat cgctgccggg tcactggacc tgcacatcct gcggggtacg
     3001 accggtcagg acgcgctggg cctgctgacg accggcgccg cgatctacgc cacgaacgtc
     3061 atcgccttcg gggtctggta ctgggagctg gaccgcggcg gccccttcgt gcgggcggcg
//
LOCUS       DASYFY010000700         1958 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_50691, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000700 DASYFY010000000
VERSION     DASYFY010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50691"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VGN19_14165"
     CDS             <1..201
                     /locus_tag="VGN19_14165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197076.1"
                     /translation="KDALVLGTNDAVYHTNYFSQLSVIEAIGGWLPLAVGADGGPEAA
                     LEAPATSPPPPTSPALPREDRP"
     gene            198..1082
                     /locus_tag="VGN19_14170"
     CDS             198..1082
                     /locus_tag="VGN19_14170"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HEV7197077.1"
                     /translation="MTSRALCVGINEFKTLPQSSWLNGCVNDAEDFAATLKKNGFQAN
                     NVTVLRDAEATKEAIMNALTGMVRQSKPGDEVLFSYSSHGTQVPDLPGTEAPGDKEPD
                     GLDEAFACHEIAVGTDGWDRDTVIIDDELRELFSSAAEGVLVEVLLDTCHSGSGTRDL
                     DDIQRDLLRGRRPRYLPPPTAKALAQARTIRANHPEAVERKALLSLVKSRGPKAKPVL
                     FAACRADQTASDAQFGGRPNGAFTYLFLKALSENPTGTRTDLHKAVTNGLKAQDFEQR
                     STLEGPVKAKQAAFGQLW"
     gene            1246..>1958
                     /locus_tag="VGN19_14175"
     CDS             1246..>1958
                     /locus_tag="VGN19_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEV7197078.1"
                     /translation="MSRLQQTDGLTEEQTELVKLVREFVDEQIIPVATELEHKDEYPQ
                     AIVDGMKEMGIFGLMIPEEYGGLGESLLTYALCVEEIARGWMSVSGIINTHFIVAYLV
                     LQHGTEEQKQHYLPKMATGEIRGAFSMSEPGCGSDVAAIKTKAVRGDDGEWSITGQKM
                     WLTNGGSANLVAVLVKTDTGADSVYRNMTTFLVDKESGFGETAQGVTVPGKIDKMGYK
                     GVDTTELILDGHRTTDAQIL"
BASE COUNT          375 a          681 c          650 g          252 t
ORIGIN      
        1 aaggacgcgc tggtcctcgg cacgaacgac gcggtgtacc acaccaacta cttcagccag
       61 ctgagcgtca tcgaggccat cgggggctgg ctgccgctcg ccgtcggcgc ggacggtggt
      121 cccgaggccg ccctcgaggc cccggccacg tcaccacccc cacccaccag cccagcgtta
      181 ccgagagagg acaggccatg accagcagag ccctgtgcgt ggggatcaac gaattcaaga
      241 cgctgcccca gagcagctgg ttgaacgggt gcgtcaacga tgccgaggac ttcgcggcga
      301 cgttgaagaa gaacggcttt caggcaaaca acgtcacggt gctccgcgac gccgaggcca
      361 cgaaggaggc gatcatgaac gccctcaccg ggatggtccg ccagtccaag cccggtgacg
      421 aggtgctctt cagctactcc tcgcacggca cccaggtgcc cgacctgccc ggcaccgagg
      481 cgcccggcga caaggagccg gacggtctgg acgaggcctt cgcgtgccac gagatcgcgg
      541 tggggacgga cggctgggac cgcgacacgg tcatcatcga cgacgagctc cgtgagctgt
      601 tctcctcggc agccgagggg gtgctcgtgg aggtgctgct cgacacctgc cacagcgggt
      661 cgggcacccg cgacctcgac gacatccagc gcgacctcct ccgaggcagg cggccgcgct
      721 acctgccgcc cccgaccgcg aaggccctgg cgcaagcgcg cacgatccgg gccaaccacc
      781 ccgaggcggt ggagcgcaag gcgttgctgt cgctcgtgaa gtcgcgaggg cccaaggcga
      841 agccagtcct cttcgccgcc tgtcgtgccg accagacggc gtccgacgcg cagttcggag
      901 ggcgacccaa cggcgccttc acctacctct tcctcaaggc cctgtcggag aacccgaccg
      961 gaacccggac cgacctgcac aaggctgtga cgaacgggct caaggctcag gacttcgagc
     1021 agcgctcgac cctcgagggc ccggtcaagg cgaagcaggc cgccttcggc cagctctggt
     1081 gagacccctc ccggggtgag ccacaccaca ggtgtccacc ctcacacgcg ggggcactga
     1141 ccgacggagc tgcccgacgg catactcggc ggaggcgacc cggccgacag cgtcgacggg
     1201 gcgcacccgt tgaacccgag cccgacgcaa ggtggcgatc caggcatgtc ccgacttcag
     1261 cagaccgacg gcctcaccga ggagcagacc gagctggtca agctcgtccg cgagttcgtc
     1321 gacgagcaga tcatccccgt cgccaccgag ctcgagcaca aggacgagta cccgcaggcc
     1381 atcgtcgacg gcatgaagga gatggggatc ttcgggctga tgatcccgga ggagtacggc
     1441 ggcctcgggg agtcgctgct gacctacgcc ctctgcgtcg aggagatcgc ccgcggctgg
     1501 atgagtgtca gcggcatcat caacacccac ttcatcgtcg cctacctggt gctccagcac
     1561 ggcaccgagg agcagaagca gcactacctg ccgaagatgg cgaccggcga gatccgtggc
     1621 gcgttctcga tgagcgagcc gggctgcggc tcggacgtcg ccgcgatcaa gacgaaggcc
     1681 gtcaggggcg acgacggcga gtggtcgatc accggtcaga agatgtggct gaccaacggc
     1741 ggctcggcca acctcgtcgc ggtcctcgtc aagaccgaca ccggcgcgga ctcggtctac
     1801 cgcaacatga cgacgttcct cgtcgacaag gagtcgggct tcggagagac ggcacagggc
     1861 gtcaccgtgc cgggcaagat cgacaagatg ggctacaagg gcgtcgacac gaccgagctc
     1921 atcctcgacg gccaccgcac gacggacgcg cagatcct
//
LOCUS       DASYFY010000701         8844 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_735067, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000701 DASYFY010000000
VERSION     DASYFY010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 8844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8844
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735067"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..591)
                     /locus_tag="VGN19_14180"
     CDS             complement(<1..591)
                     /locus_tag="VGN19_14180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEV7197079.1"
                     /translation="MAGLLSQVLLLTALAATVGLTARGWGVGLACGVVTAAVLSRGMT
                     VQSRRQLGPADRVTLSRVVVAGGVAALTVDSFGHALVRPVLVVLAAVALALDGVDGWV
                     ARRTGTVSHLGARFDLEADAFLILVLSVLVARTNGVWVIALGAARYLFVAAGWAAPWL
                     RGALPLRYWRKVVAATQGVVLTVVASSLLPSWLALTA"
     gene            724..1704
                     /locus_tag="VGN19_14185"
     CDS             724..1704
                     /locus_tag="VGN19_14185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="HEV7197080.1"
                     /translation="MRTDAAAYWLREPGLGEIRPVVLPEPGPGDVVVRTLRSGISRGT
                     ESLVFRGGVPSSQYAAMRAPFQEGDFPGPVKYGYLNVGVVEQGPDGLVGQTVFCLYPH
                     QSRYVVPAEAVSVVPDGVPPDRAVLAGTVETAVNALWDAAPRVGDAVAVVGAGMVGCC
                     VARLLAHFPGVRVTLVDALDERAKVASSLGVQFATPQDDLGPCDVVVHASGTSEGLQR
                     SIDLLATEGTVVDLSWYGAAEVRLHLGGAFHSQRLSIRASQVGAVAAARRANHTRAQR
                     LALALELLRDPAFDALLTGRTAFADLPTAMAGLNGGGSSTLCHIVTYEGH"
     gene            1708..2103
                     /locus_tag="VGN19_14190"
     CDS             1708..2103
                     /locus_tag="VGN19_14190"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018172831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070497 -
                     6-carboxy-5,6,7,8-tetrahydropterin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEV7197081.1"
                     /translation="MFSVTVRDHLLVAHTLHGEVFGPAQRLHGATYVVDATFRRADLD
                     ADGIVLDLGRAARELAAVVAELSYRNLDDDPSLAGVNTTTEVLARVVAERLTTRLQSS
                     GGDVVPDLTGITVTLHESHIAWASYELAW"
     gene            2097..3224
                     /locus_tag="VGN19_14195"
     CDS             2097..3224
                     /locus_tag="VGN19_14195"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEV7197082.1"
                     /translation="MVNEMYFVVPRGFDDPHRPSGGNAYDVRVARDLAGARWRVHLRP
                     VALRALGVLGALGGARDSLAGTRDSLAGTLGALPDGSTVLVDGLVGSAAEDAMLPHSR
                     RLRLVALVHLPLGAGRGGFEQDESVWEETRQAESAVLKACQAVICTSEWTRRWLVTQY
                     GLAPARLWIARPGADEAAAVGGSPSGSQLLCVGALTPVKGQDLLLAALTALRDLDWCC
                     TMAGPLDRDAGFVTRLREQAERGGIADRVRLVGPTAIAQLEATYAASDLLVLASRVES
                     FGMVVSEALAFGLPVVATDVGGIPEAFLGAGSEASPGAAPGALVSPEGSGPLTKALRE
                     WLTQPQTRLDWREAAQQRRLTVPRWTTTVDQVSQVLAEVSA"
     gene            3221..4045
                     /locus_tag="VGN19_14200"
     CDS             3221..4045
                     /locus_tag="VGN19_14200"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEV7197083.1"
                     /translation="MSAEPVRTSSPWLQLREPADAAARSPALASHARRLLPQGRPVVI
                     HDLGCGTGAMMRWLAPQLPGPQHWVLYDRDEELLDLAMSGPAPSSAGGTPVTRRPELL
                     DLTGLQPADLAGASLVTASALVDLLTEAEVQHLVAACLGAGCPVLVMLSVVGDVRLRP
                     SHRLDGPLNEAFNQHQQRTVNDRTLVGPQGVELVGTGFAQAGLRVLSRSSDWNLDATQ
                     SSLSAEWLTGWTQAASEQAPHLAAPAAAYLRRRLDQAYAGQLQVTVGHRDLLAVPE"
     gene            4042..4956
                     /locus_tag="VGN19_14205"
     CDS             4042..4956
                     /locus_tag="VGN19_14205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013491871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEV7197084.1"
                     /translation="MKLTTWAQVLGGAAIGGLVLVRVGAAPALTAVRALSPWPLVAAA
                     GIGLLTTVCCAWRWTVVARALQVDLSWRAGIAAYYRSQFLNSTVPGGVVGDVHRGLHH
                     GRATGDRPRAFEAVILERWAGQGVLLVVAGVVLVAVPSPMHPTGWLIAAGLLAVAGVA
                     VAVFACLSRLPEQWQRGRRLREHLGTDWTALRSPTVWLPVGLASLCAVGGHLATFLLA
                     AHVAGSSAGPAVLVPIGLVMLVSMGVPVNVAGWGPREGAAAWAFSAAGFGAAQGVTTA
                     AVYGLLTLVACLPGAVVLLAARVGGGRA"
     gene            4949..5638
                     /locus_tag="VGN19_14210"
     CDS             4949..5638
                     /locus_tag="VGN19_14210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018172827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEV7197085.1"
                     /translation="MPERPYTVLSCSISIDGYLDDGTSERLVLSNDADLDRVDAVRAS
                     SDAILVGASTVRRDNPRLEVRSEQRRAARMARGLSATPIKVTVTATGRLDAGCAFFAN
                     GAPSLVYSTTSAAAEVRTSVGRLATVIDAGERVDLGWLSEDLHGRGVRRLMVEGGGHT
                     LTQFLTAGLADELHLVVAPLFVGDSRGSRLVDDGRFPWNAQSRATLAEVVKIGDVVLL
                     RYALSARFTLD"
     gene            complement(5671..6909)
                     /locus_tag="VGN19_14215"
     CDS             complement(5671..6909)
                     /locus_tag="VGN19_14215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010849742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEV7197086.1"
                     /translation="MRLTRTVVALVTAIVLGSWAWSACSSSSADVPTVGGSATTSTKQ
                     PSHTTSAAASAPSVYAAAGVGALSAVARTAKPMVYVPNTISNTVQLIDPNTYQVVGRF
                     HTGAEPQHVVPSWDLSTLWVNADHANTLTPIDPRTGQAGTPIPVDDPYNLYFTPDGQH
                     ALVMAERLRRIDIRDAHTMQLQRSLHVPCSGINHADFTRDLKTLVASCEFDGQLIITD
                     AGAHSLRGVINLNAIKTPGATTPQEAMNMAGSPKAGLQPGASAMPQDVRLTPDGRYFL
                     AADMLRNGIWVIDATTLKYARFIHTGMGAHGIYPSRDAKRLFVSNRDEGTISVLDSST
                     LAQVAKWTIPGGGSPDMGGVTADGKQLWLSGRYDNVVYVFDTTTGALLHKIPVDAGPH
                     GLSVWPQPGRFSLGHTGNMR"
     gene            complement(6918..7772)
                     /locus_tag="VGN19_14220"
     CDS             complement(6918..7772)
                     /locus_tag="VGN19_14220"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEV7197087.1"
                     /translation="MPDELSDDRRDDTGELPGRAPSRRTVIAASLTGLTLGACAAPSS
                     TTATTSTHASGAKKPPAKSSPGAASSSRGPAPEPAIAKTAGPDIVHGPRDRQAVALTF
                     HGQGPVELVREILSACHAANAQITVFAVGTWLQATPTLGREILAAGHELGNHTWSHQQ
                     MKQLSAAEATREAQQGADALRTAVGTAGWWFRPSGTQHSTATIRAAAQAAGYQRCVSY
                     DVDPSDYLDPGAAAVRDRTLAQVQPGSIISLHFGHTGTAAALPAILAGLSRKGLAPVT
                     LSRLLAAA"
     gene            8234..>8844
                     /locus_tag="VGN19_14225"
     CDS             8234..>8844
                     /locus_tag="VGN19_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018190859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEV7197088.1"
                     /translation="MKVGIPREVKNNEYRVAITPAGVHELTVHGHQVFVEKDAGVGSS
                     IVDEDYVSAGATILGTADEVWETGELILKVKEPVESEYGYFRPGLVLFTYLHLAADEK
                     LTHALIDSEVVAIAYETVQLPSRALPLLAPMSEVAGRLAPIVGANTMLKPNGGPGLLV
                     PGVPGTHPAVVTVLGGGVAGTNAVSVAVGLGAEVTVLDTNIQRL"
BASE COUNT         1255 a         3031 c         3137 g         1421 t
ORIGIN      
        1 agcggtcagg gccagccacg agggcagcag tgacgaggcc accacggtga ggacgacccc
       61 ctgggtggcg gcaaccacct tgcgccagta gcgcaggggc aacgcccccc gcagccacgg
      121 cgcggcccaa ccagcggcga cgaacagata ccgcgctgcc ccaagagcga tcacccagac
      181 gccgttggtg cgagccacca ggacgctgag gaccaggatg agaaaggcgt cggcctccag
      241 gtcgaacctc gcacccagat gcgacaccgt tcccgtacga cgcgccaccc atccgtcgac
      301 cccgtcaagg gccagggcca ccgcggcgag gacgaccagc accggacgga cgagggcgtg
      361 gccgaacgag tccacggtca aagccgccac tcccccagcc actaccaccc ggctcagcgt
      421 gacgcggtcc gctggcccca gctgccgacg cgactggacg gtcatccctc gcgacagcac
      481 agcagccgtg accacgccgc acgccagccc gacaccccaa ccgcgcgcgg tgaggcccac
      541 ggtggccgcc agtgcggtca gcagcagcac ctggctgagc agtccggcca cggggccacg
      601 ttgaaccgat cgcacagttc ctccgtgtct agagctacaa ggcgatacaa aggggtacgg
      661 ccatgagacg agaggaacgg tgctcccgtt caccctccct gggcgcctgg ttacggaggg
      721 gttgtgagga ctgacgcggc ggcgtactgg ctgcgcgaac cgggtctcgg cgagatccgt
      781 cccgtcgtgc tgcccgaacc cggccccggg gacgtcgtcg tccggacgct gcggtcgggg
      841 atcagccgcg ggaccgagag cctcgtcttt cgtggcggcg ttccgtcgag ccagtatgcc
      901 gcgatgcggg cgcccttcca ggaaggggac tttcccgggc cggtcaagta cggatacctc
      961 aacgtgggcg tggtcgagca aggccctgac gggctcgtag ggcagacggt gttctgcctc
     1021 taccctcatc agagcaggta cgtcgtcccg gcggaggcgg tgagcgtcgt ccccgacggc
     1081 gtgccccccg atcgtgccgt gctggccggc accgtcgaga ccgccgtcaa cgcgctgtgg
     1141 gatgccgcgc ctcgggtcgg cgacgccgtg gcggtggtgg gagcaggcat ggtcgggtgc
     1201 tgcgtcgccc gcctcctcgc ccactttccg ggggtgcggg tgactctggt cgatgccctc
     1261 gacgagcggg ccaaggtcgc gtcctcgttg ggagttcagt tcgcgacacc gcaggacgac
     1321 ctcggcccgt gtgatgtcgt ggtccacgcg agcggcacct cggaggggct gcagagatcc
     1381 atcgacctgc tcgcgactga gggcaccgtg gtggacctca gctggtacgg cgccgccgag
     1441 gtccgcctgc acctcggcgg cgctttccac tctcaacggc tctccatcag ggccagccag
     1501 gtcggcgccg ttgccgctgc ccgacgggcc aaccacactc gcgcccaacg cctggccttg
     1561 gcccttgagc tgttgcgcga ccctgctttc gacgcgttgc tcaccggacg cacggcgttc
     1621 gccgacctgc cgactgccat ggccgggctt aacggtggcg gatcgtccac cttgtgccac
     1681 atcgttacct acgaaggaca ctgagtcatg ttcagcgtga cggtccgaga ccacctgctg
     1741 gtggcccaca ccctgcacgg tgaggttttc ggccccgcgc aacgccttca cggcgcgacc
     1801 tacgtcgtcg acgcaacctt tcggcgagcc gacctcgacg ccgacggcat cgtcctcgac
     1861 ctcggccgag cagcccggga actggccgcg gtggtcgccg agctcagcta tcggaacctc
     1921 gacgacgacc cgagcctcgc cggggtcaac accaccaccg aggtcctggc acgagtggtg
     1981 gccgaacgcc tgacgacgag gttgcagtcg agcgggggcg acgtggtgcc cgacctgacc
     2041 ggaatcacgg tcacgctgca tgagtcccat atcgcctggg ccagctacga gctcgcatgg
     2101 tgaacgagat gtacttcgtg gtgccgcgcg ggttcgacga cccgcatcga cccagcggcg
     2161 gcaatgccta cgacgtgcgc gttgcccgcg acctggctgg cgctcggtgg cgagttcacc
     2221 tgcgaccggt cgcgcttcgt gcccttggtg tccttggtgc cctaggcggg gcccgagact
     2281 ccctggccgg gacccgagac tccctggccg ggaccttggg cgcgttgccg gacggatcga
     2341 ccgtcctggt cgacggtctc gtgggatccg cggcagagga cgcgatgctg ccgcactcac
     2401 gacggttgcg actggtggcg ctggtccact tgcccctggg cgccggtcgg ggcgggttcg
     2461 agcaggatga gagcgtgtgg gaggagacgc ggcaagcgga gtcggcggtg ttgaaggcct
     2521 gccaggccgt catctgcacc agcgaatgga cgcggcgctg gctcgtcacg cagtacgggc
     2581 tcgcgccagc gcgcctgtgg atcgcgcggc ccggtgcgga cgaggctgca gcggtcggcg
     2641 gctctccgtc cggctctcag ctcctgtgcg tcggcgctct cacccccgtc aaaggccagg
     2701 atctcctcct cgcggctctt accgctcttc gcgacctcga ctggtgctgc accatggccg
     2761 ggccgttgga ccgcgatgct ggcttcgtga cccgcctgcg cgagcaggcg gagcgaggcg
     2821 gcatcgccga ccgggtccgg ctcgtcgggc cgaccgccat cgcacagctc gaggcgacgt
     2881 atgccgcgtc cgacctgctc gtgctcgcct cgcgggtcga gagcttcggg atggtggtca
     2941 gcgaagccct ggccttcggt ctgcccgtcg tcgcgacgga cgtcgggggc atccccgagg
     3001 ccttcctggg agccggatcc gaggcgtcac ctggggctgc gcccggagcc ctggtcagcc
     3061 cggagggcag cggcccgttg accaaggccc tgcgcgaatg gctgacgcag ccgcagaccc
     3121 gcctcgactg gcgagaggcc gcgcagcaac gtcgcctcac agtgccgcgc tggaccacca
     3181 cggtcgacca ggtgtcgcaa gtcctggcag aggtctccgc atgagtgccg aacccgtgcg
     3241 aaccagctcg ccgtggctgc agcttcggga gccggcggac gcggccgccc gctcgcctgc
     3301 tctggcgtcg cacgcgagac gccttctgcc acaagggcgc ccggtcgtca tccacgatct
     3361 aggctgcggc accggggcga tgatgagatg gctcgccccg cagctgcccg gtccgcagca
     3421 ctgggtcctc tacgaccggg acgaggagct gctcgacctg gccatgagtg gcccggcgcc
     3481 gtcgtcagcc ggcggcacgc ccgtgacacg gcgtcccgag ctcctcgacc tcacggggct
     3541 gcaacccgcc gaccttgccg gtgcgtccct cgtcacggcg tctgccctgg tggacctgct
     3601 gactgaggcc gaggttcagc atctggttgc tgcgtgtctt ggcgcagggt gtccggtcct
     3661 ggtgatgctc tcggtggtgg gcgacgtccg cctgcgccct tcgcatcggc tggacggacc
     3721 gctgaacgag gcgttcaacc agcatcaaca gcgcactgtg aacgaccgga ccctggtggg
     3781 gccccagggc gtcgagctgg tcggcaccgg gttcgcccag gccgggctgc gggtgctcag
     3841 ccggtccagc gactggaacc tcgacgccac ccagtcgtca ctgagcgccg aatggctcac
     3901 ggggtggact caggccgcgt ccgagcaagc gcctcacctg gccgcgccag ctgcggcata
     3961 cctgcgtcgt cgactggacc aggcgtatgc cggtcagctc caggtgaccg ttggccatcg
     4021 tgacctcctg gcggtgccgg agtgaagctg acgacgtggg cacaggtgct cggcggcgcc
     4081 gccatcggag gtctggtgct ggtgcgggtc ggtgcggctc ccgcgctgac cgccgtgcgc
     4141 gccttgagtc cgtggcccct tgtcgccgcc gcgggcattg ggctgctgac caccgtctgc
     4201 tgcgcctggc gatggaccgt agtggcccgg gccctccagg tcgacctgtc atggcgtgcc
     4261 ggcatcgcgg cgtactaccg gtcacagttt ctgaactcca cggttcccgg tggtgtcgtg
     4321 ggcgacgtcc accgggggct gcaccatgga cgcgcgaccg gcgaccgacc gcgggccttc
     4381 gaggctgtga tcctggagcg ctgggcgggt cagggggtcc tgctcgtcgt cgcgggcgtg
     4441 gtgcttgtgg cagtgccctc cccgatgcat ccgaccggat ggctgatcgc agcagggctg
     4501 ctggcggtgg ctggcgtcgc ggtggctgtc tttgcctgcc tgtctcggct gcctgaacag
     4561 tggcagcggg gccgcaggct ccgcgagcac ctgggcaccg actggacagc cttgcgctct
     4621 ccgaccgtgt ggctgcctgt ggggctcgcc tcgctgtgtg ccgtcggggg acacctcgcg
     4681 acgttcctgc tcgccgccca cgtcgccggg tcctcggccg ggcccgctgt cctggtaccg
     4741 atcggcctgg tcatgctcgt ctcgatgggg gtccccgtca acgtcgcagg ctggggtcca
     4801 cgcgagggag cagcggcctg ggcgttctcg gcggccgggt tcggcgcggc tcagggagtg
     4861 accactgccg ccgtctacgg actgctcacc ctggtggcct gccttcccgg ggctgtcgtc
     4921 ctcctcgccg cccgggtcgg aggcggacgt gcctgaacgg ccgtacacgg tgttgagctg
     4981 cagcatctcc atcgacgggt acctcgacga tggaacgtcc gagcgactgg tgctttcgaa
     5041 cgacgccgac ctggaccggg tcgacgccgt ccgcgcgtcc agtgatgcga tcctcgttgg
     5101 cgccagcacg gtccgccggg acaacccgcg cctggaggtg cgctccgagc agcgacgagc
     5161 ggcccggatg gctcgcggcc tgagcgcgac ccccatcaag gtgacggtca cggccaccgg
     5221 gcggctggat gcgggttgcg cgttcttcgc caatggggcg ccaagcctgg tctacagcac
     5281 gacgtccgca gcggccgagg tccgcaccag cgtggggcgc ctcgcgaccg tcatcgatgc
     5341 cggcgagcgc gtcgacctgg ggtggctgag cgaggatcta cacggtcggg gtgtgcggcg
     5401 cctcatggtc gagggcggtg ggcacaccct cacgcagttc ctgaccgcgg gcctggcaga
     5461 cgagctccac ctcgtggtcg ccccgttgtt cgtgggcgac tcgaggggaa gccggctggt
     5521 ggatgacggc cgattccctt ggaacgccca gagtcgcgcc acgctcgccg aggtcgtcaa
     5581 gatcggtgac gtcgtgctcc tgcgctatgc gctgtcagcc cggttcaccc tcgactgagt
     5641 ccctcgaggg actcagcctc gactggccgt tcagcgcatg ttgccggtat ggccgaggct
     5701 gaagcggccc ggctggggcc acaccgacag tccgtgcggc ccggcatcca cgggaatctt
     5761 gtgcaacaac gcgccggtgg tggtgtcgaa gacgtagacc acgttgtcat agcgcccaga
     5821 cagccagagc tgtttgccat cggccgtgac gccgcccatg tcaggcgagc cgcctccggg
     5881 gatcgtccac ttggccacct gagcgagcgt gctggagtcc agaacgctga tggtgccctc
     5941 gtcgcggttg gagacgaaga gccgcttggc atcccgagag gggtagatgc cgtgggctcc
     6001 catcccggtg tggatgaagc gcgcgtattt cagggtggtg gcgtcgatga cccagatgcc
     6061 gttgcgcaac atgtcggcgg cgaggaagta gcggccgtct ggggtgagcc gtacgtcttg
     6121 cggcatcgcg ctggcgcccg gctgtaggcc ggccttcggg ctgcccgcca tgttcatggc
     6181 ctcttgcggc gtggtggccc cgggggtctt gatcgcgttg aggttgatca cgccacgcag
     6241 ggagtgggcg ccggcgtccg tgatgatcag ctggccgtcg aactcacagc tcgccacgag
     6301 cgtcttgagg tcgcgggtga agtcggcgtg gttgatgccc gagcagggga cgtgcagcga
     6361 tcgctgcagc tgcatggtgt gcgcgtcgcg gatgtcgatg cgacgcaggc gctccgccat
     6421 gaccagcgcg tgctgcccgt ccggggtgaa gtacaggttg tacggatcgt ccaccgggat
     6481 gggcgtgccg gcctgacccg tgcgtgggtc gatcggcgtc agggtgtttg cgtgatccgc
     6541 gttgacccac agggtggaca gatcccagga cgggaccacg tgctggggct ctgctcccgt
     6601 gtggaaccgg cccaccacct ggtaggtgtt cggatcgatc agctgcacgg tgttgctgat
     6661 ggtgttgggc acgtagacca tcggcttcgc cgtgcgagcc acggcgctga gggcacccac
     6721 gccggccgcg gcatacaccg acggagcgga cgccgcagcg ctggtggtgt ggctcggctg
     6781 cttcgtggag gtcgtggcgg agccaccgac cgtgggcacg tcggcggagc tggacgaaca
     6841 cgcggaccag gcccaggaac ccagcacaat cgccgtcacc agggccacga ccgtgcgagt
     6901 gagcctcact cgacggctca tgcggcggcc aacagtcgcg acaacgtgac cggagcgagg
     6961 cccttgcggg acaagcccgc gagaatcgcc ggcagggcgg cggcggtacc tgtgtggccg
     7021 aagtgcaggc tgatgatgga tccgggttgc acctgggcga gcgtgcggtc acgcaccgcg
     7081 gcagcacccg ggtcgaggta gtcgctgggg tctacgtcgt acgagacgca gcgctggtac
     7141 ccggctgcct gcgctgccgc cctgatcgtg gcggtgctgt gctgggtgcc ggacggcctg
     7201 aaccaccatc cagcggtgcc gaccgctgtc cgcagggcgt ctgcgccctg ctgcgcctct
     7261 cgagtggcct ctgcggctga gagctgtttc atctgctggt gactccacgt gtggttgccc
     7321 aactcgtgcc ctgcagccaa aatttcccgg ccaagcgtgg gcgttgcctg cagccaggtt
     7381 cccactgcga acaccgtgat ctgggcgttg gccgcgtgac acgccgacaa gatctcgcgg
     7441 acgagctcga cggggccctg cccgtggaag gtcagggcca cggcctggcg gtcgcgaggt
     7501 ccatgcacga tgtcggggcc ggcggtcttg gcgatggcgg gctccggagc gggcccgcga
     7561 ctcgaggagg ctgcgccagg cgaggacttg gccggcggct tcttggcgcc gctggcgtgg
     7621 gtgctggtcg tggcagtcgt cgaagacggt gccgcgcacg cacccaaggt caacccggtg
     7681 aggctggccg cgatgacagt gcggcgcgat ggcgcacgtc cgggcagctc gccggtgtcg
     7741 tcgcgtcggt cgtcggacag ttcatcaggc actgaaaacc cctccaaggg agtcaccggt
     7801 cgtcgggttg tgggaggcca tcgcgtcacc atcagggctc caccctgaga acgccctgaa
     7861 cgggctggtg acccggggtg cggggggcgc ggagcccctg gcacgtccac tggcacgtcc
     7921 acccgagtct tgcatcaccc gttcggacgg cctttcgtgt cgctgcacca tagccatcac
     7981 cctacgggcc taccgtgaaa ctgtgagcac gcccacgacc caccggacca ccacccacca
     8041 cccgcgagtg cagcgcgaag cccgcgggtg ggtgtgggtt tgtgcttgtg gtagcgcctc
     8101 ttgccggact ccgactcaag ctccactccc ctggcgtctc gccctcatcg gagcattgct
     8161 gcattcaggc accatcgcgc cctgagttcg gcctatggtg cgaggaccac tgcgatccag
     8221 gaggtctgtg cacatgaagg tcggcatccc acgcgaggtc aagaacaacg agtaccgcgt
     8281 cgccatcacc ccagcgggcg ttcacgagct gacggtccac ggccaccagg tgttcgtgga
     8341 gaaggacgcc ggtgtcgggt cgtccattgt ggacgaggac tacgtctctg ccggagcgac
     8401 gatcctgggc accgcggacg aggtctggga gaccggcgag ctcatcctca aggtcaagga
     8461 gcccgtcgag agcgaatacg ggtacttccg gcccgggctc gtcctcttca cgtacctcca
     8521 cctggccgcc gacgagaagc tgacccacgc cctcatcgac agcgaggtcg tcgccatcgc
     8581 gtacgagacg gtgcagctgc cgagccgggc tctccccctc ctcgcaccga tgtccgaagt
     8641 ggccggccgt ctcgcgccga tcgtcggtgc caacacgatg ctgaagccga acggcgggcc
     8701 cggcctgctc gtccccggcg tcccgggcac gcacccggcc gtggtgaccg tcctcggcgg
     8761 cggcgtcgcg gggaccaacg ccgtctcggt cgcggtcggc ctgggggcgg aggtcaccgt
     8821 cctcgacacg aacatccagc gcct
//
LOCUS       DASYFY010000702         2125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1628586, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000702 DASYFY010000000
VERSION     DASYFY010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1628586"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..886)
                     /locus_tag="VGN19_14230"
     CDS             complement(<1..886)
                     /locus_tag="VGN19_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004144 - diacylglycerol O-acyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0045017 - glycerolipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEV7197089.1"
                     /translation="MPDRLNSLDASFLYLEETTTPMHVGSVMVFDPPSEGFDYDRLVQ
                     LISTRIAFVPRYRQRIRQVPGRLANPVWVDDENFDVTYHVRRSALPRPGTDEQLQEFV
                     ARIQPRALDRNRPLWEVYLVEGLAEGRFAIVSKSHQALVDGVNAVDIAHVIVDGDPAS
                     EGLVPDTWRPSREPSDIELLTAALVDVVRRPSEVVENVRGGIIDVKALGSRALAAAGD
                     VASTLARTATRPAPQSPLNAPVGEARRYVMIGTDLEDYRKVRTRLARGNYADDVTIND
                     VVLATISGAFRAWLLTRGE"
     gene            927..>2125
                     /locus_tag="VGN19_14235"
     CDS             927..>2125
                     /locus_tag="VGN19_14235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197090.1"
                     /translation="MTKMTPLPQFGGVQALVAHGVGSRADLPLPFGLLLVGAAAALVV
                     SFVALGALWREPRLRPTDGRLLPTMVSLALDSAPVRGLFVLVSLLLTGWTLLALVAGA
                     DTANNPVPIVVYVWLWVGLAFGSLVFGGLWAVVNPVRWLRRGLLALGRIDEDFTLAEY
                     RLGYWPAAAGLLAFVWLELIAPDNASLPTLRVAIFGYLLVSLILSLTFGPDYLRHGDP
                     FGAWSRLYGTLSPLGRRADGRWVLRSPLHGPLMVAPQPGLLAVTSVMLGSTAYDGFSG
                     ETRWYTFVQSSVVPARILQTTGLVTMCLVVAGSLWVAAAISARLSGISSRGTATAFAP
                     SLIPIAAGYLIAHYWSLWVWEGTHGLAKMSDPLGIGANWWGTAGVTPSPVLIGPSLVA
                     GIQVVSI"
BASE COUNT          276 a          720 c          753 g          376 t
ORIGIN      
        1 cctcaccccg ggtcagcagc cacgcgcgaa aggctccgga gatcgtcgcg agcacgacat
       61 cgttgatggt cacgtcgtcg gcatagttgc cgcgcgccag gcgggtgcgg accttgcggt
      121 agtcctccag gtccgtcccg atcatgacgt agcgccgcgc ctctccgacg ggcgcgttga
      181 ggggggactg tggcgcaggc cgcgtggccg tgcgggccag cgtcgaggcg acatcgccag
      241 ccgcagccaa cgcccgcgac ccgagcgcct tgacgtcgat gattccgccg cgaacgttct
      301 cgacgacctc gctgggccgc cggaccacgt cgacgagcgc cgcagtaagc agctcgatgt
      361 cgctgggctc tcgcgacggg cgccacgtgt ccggcacgag tccctcggag gccggatcgc
      421 catccacgat gacatgggcg atgtccaccg cgttgacgcc gtcgacgagc gcctggtggg
      481 acttgctcac gatggcgaac cgcccctcgg ccaacccctc gacgagatag acctcccaca
      541 gcgggcggtt gcggtccagg gcacggggct ggatgcgggc gacgaactcc tgcagctgct
      601 cgtcggtgcc gggtcgcggc agggccgagc gacggacgtg gtaggtgacg tcgaagttct
      661 cgtcgtcgac ccagacagga ttggcgaggc gaccgggcac ctgacggatc cgctggcgat
      721 accgcggaac gaacgcgatt cgcgtcgaga tcagctggac gagccggtcg tagtcgaagc
      781 cttcgctggg cggatcgaac accatgaccg accccacgtg catcggggtc gtcgtctcct
      841 cgaggtacaa gaacgacgcg tcgagggagt tcaggcggtc gggcaccccc acatcgtggc
      901 agaactcggt gcctagactc cgattcgtga ccaagatgac ccccttgcca cagtttggtg
      961 gcgtgcaggc cctcgtggcg cacggcgtcg gctcacgcgc ggacctcccc ctaccgttcg
     1021 gcctgctgct ggtcggggcg gctgcagccc tggtcgtgtc gttcgtcgca ctcggtgccc
     1081 tctggcgcga gccccggctc cggcccaccg acggtcgcct gctccccacg atggtgtcgc
     1141 tcgcactgga ctcagcaccg gtgcgaggcc tcttcgtgct cgtgagcctg ctgctgaccg
     1201 gctggaccct actggcgttg gtcgccggcg ctgacacggc gaacaacccg gtcccgatcg
     1261 tcgtctacgt ctggttgtgg gtggggctgg ccttcggctc actggtgttc ggcggcctct
     1321 gggccgtcgt gaacccggtt cgctggctcc gtcgggggct gctcgcgctg gggcgcatcg
     1381 acgaggactt caccctcgcg gagtaccggt tggggtactg gccggccgcc gcgggactgc
     1441 tggcgttcgt ctggctcgag ctgatcgccc cggacaacgc cagcctgccg accctgcggg
     1501 tggcgatctt cgggtacctg ttggtgagcc tgatcctcag cttgacgttc ggtccggact
     1561 atctgcgcca tggggatccg tttggcgcgt ggtcgcggct gtacggcacg ctgagccctt
     1621 tggggcggcg ggcggatggc cgctgggtgc tgcgctcgcc gctgcacggg ccgctgatgg
     1681 tggcgcccca gcccggcctg ttggcggtga cgtcggtgat gctcggcagc acggcctacg
     1741 acgggttctc gggcgagacc aggtggtaca ccttcgtaca gagctccgtc gtgccggccc
     1801 ggattctgca gaccaccggg ctggtcacga tgtgtctcgt ggtcgccggc tcgctctggg
     1861 tggctgccgc catctccgcc aggttgtcgg ggatctcctc gcggggtact gcgaccgcct
     1921 tcgccccgtc gctcatcccc atcgccgccg gctatctcat cgcgcactac tggtccctgt
     1981 gggtatggga ggggacccat gggctggcca agatgtcgga cccgctcggg atcggtgcga
     2041 actggtgggg caccgccggg gtcacgccct cgccggtgct gatcgggccg agcctggtcg
     2101 caggcatcca ggtggtgtcg atcat
//
LOCUS       DASYFY010000703         1535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1050587, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000703 DASYFY010000000
VERSION     DASYFY010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1050587"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..334)
                     /locus_tag="VGN19_14240"
     CDS             complement(<1..334)
                     /locus_tag="VGN19_14240"
                     /inference="COORDINATES: protein motif:HMM:NF018770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 family protein"
                     /protein_id="HEV7197091.1"
                     /translation="MRTSPATRIYATTVAHSRTEPLVHRFRHRSHSWLVDLDQLPQLG
                     VLAPLARFLAADHLGDPSRSLRQNLDTFLATHGVDLCGGQILMLAMPRVLGTVFNPMS
                     VFWCHDHEG"
     gene            complement(331..>1535)
                     /locus_tag="VGN19_14245"
     CDS             complement(331..>1535)
                     /locus_tag="VGN19_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019482495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEV7197092.1"
                     /translation="ADQRLGGHADTHVVTLDGRTINVDTGFIVHNDRTYPTLLRLFAE
                     LGVQTQDSDMSMSVRCDDQALEYAGAKGPRGLFPVAGNLANPAYLRMLGEVRRFHREA
                     RRLLARPEAAQETLASFVERVRFSEYFARCFLEPLVAAVWSCDPSLSLQYPARYLFEF
                     LDHHGMLTVFGSPTWRTVAGGSARYVEKVAAGIDEIRLGSAVRSVTERGEGVLVHDDQ
                     GGVEAYDSVVIAAHPHQALAMLAAPTAAQREVLGAMPYSRNVAQLHTDQSVLPRSEGA
                     RASWNYWQRAAGSDGVLVTYDMTRLQRLDTGDTRLLVTLNGVDCVDQDLVLDTMHYEH
                     PLYTPESVAAQRRLPELGTARLAFAGAYHGWGFHEDGAKSGVAAAAQLGVAWQVGQPA
                     RVLEVAAS"
BASE COUNT          240 a          518 c          551 g          226 t
ORIGIN      
        1 ggccttcgtg gtcgtggcac cagaacaccg acatggggtt gaagaccgtc cccagcaccc
       61 ggggcatcgc cagcatgagg atctgaccgc cgcacaggtc cacgccgtgc gtggccagga
      121 aggtgtcgag gttctgtcgc agcgaccggg aggggtcgcc caggtggtcg gcggcaagga
      181 accgtgccaa cggggccagc acgccgagct gcgggagctg gtcgaggtcg accagccagc
      241 tgtggctgcg gtggcggaac cggtgcacga gtggctcggt gcgcgagtgg gccacggtgg
      301 tcgcatagat ccgggtggcc ggtgaggtcc tcatgacgcg gcgacctcca gcactcgagc
      361 gggctgtccc acctgccagg ccacgccgag ttgtgctgcg gcagcgacgc cggacttggc
      421 tccgtcctcg tggaaacccc acccgtggta cgccccggcg aacgccagcc gcgcagtgcc
      481 cagctccggc agacgtcgtt gcgccgcaac agattcgggt gtgtagagcg ggtgctcgta
      541 gtgcatggtg tccaggacga gatcctggtc cacgcagtcc accccgttga gggtcaccag
      601 gagtcgggtg tcgccggtgt cgagacgctg cagccgggtc atgtcatacg tcacgaggac
      661 gccgtccgag ccggccgccc gctgccagta gttccacgac gcccgggcgc cttcgctgcg
      721 cgggagcacg gactggtccg tgtgcagctg ggccacattg cgcgagtagg gcatcgcgcc
      781 gagcacctca cgctgagcgg cggtcggtgc cgcgagcatg gcgagcgcct gatgggggtg
      841 cgccgcgatg acgaccgagt catacgcctc gacgccgccc tggtcatcgt ggaccaggac
      901 cccttcccca cgctcggtga ccgagcgcac cgcgctgccg agccggatct cgtcgatccc
      961 cgcagccacc ttctccacgt accgggcgga cccgcccgcg acggttcgcc aggtcggcga
     1021 cccgaacacc gtgagcatgc cgtggtggtc gaggaactcg aagaggtacc gggccgggta
     1081 ctgcagggac aggctcgggt cgcaggacca caccgccgcg accaacggct caaggaagca
     1141 ccgcgcgaag tactcgctga accgcacccg ttcgacgaac gaggccaggg tctcctgcgc
     1201 ggcctccggc ctcgccagca gtcgccgggc ctcacggtgg aagcgtcgaa cctcgccgag
     1261 catgcgcagg tatgccgggt tggccaggtt gccggccacg gggaacaggc cccgcgggcc
     1321 cttggcaccg gcatactcca gggcttggtc gtcgcaccgg acggacatgc tcatgtcgga
     1381 gtcctgggtc tggaccccca gctcggcgaa caggcgaagc aacgtcgggt aggtgcggtc
     1441 gttgtgcacg atgaacccgg tgtcgacgtt gatggtgcgc ccgtcgaggg tgaccacatg
     1501 ggtgtctgcg tgcccgccca gtcgctggtc cgctt
//
LOCUS       DASYFY010000704         1524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1471260, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000704 DASYFY010000000
VERSION     DASYFY010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471260"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VGN19_14250"
     CDS             <1..678
                     /locus_tag="VGN19_14250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197093.1"
                     /translation="SPPSLVAPSDPDLIHAVRLAELARHDIETLAADFRLDCSLLAKV
                     GGDVVFVLTANHSQSQGTTSVGHRVPLIPPLGSVFLHDASEQEVDEWLARVPRASTAT
                     PEQLRRNLDKVRERGYSLSLMPEPSVDRIALMTDYSSSERLPEHERQMHKMIADTAAL
                     YEPDLEEGQGYDLHSIVVPVPGPQGQPPIAMRMSGLPAGATREQAQVWVTALRQAAST
                     AAARLCS"
     gene            813..>1524
                     /locus_tag="VGN19_14255"
     CDS             813..>1524
                     /locus_tag="VGN19_14255"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7197094.1"
                     /translation="MNASVKALGYAVVDTTDLDAWYRFGVELLGLQAAERTKDRLLLR
                     MDEYAYRLDVRRAETDGVVALGWDVGSEAALDEITKRLADAGYAVARQDDETAAARQV
                     DAIARFRDPDDNYDFELFWGLRNATEPFVSPIGATFVASELGLGHAFQVVRDEETYRQ
                     LYFDLLGFRLSDHIDMPGGVSGVFTHCNPRHHSFAFAAAPNRPVGIGHLMLEVDDLDI
                     VGRAYDKVLDGAAPILSTF"
BASE COUNT          241 a          536 c          509 g          238 t
ORIGIN      
        1 tcaccaccgt cgctggttgc gccctcggac ccagacctga tccacgccgt caggctcgcc
       61 gagctggcgc gacatgacat agagaccctg gccgccgact tccggcttga ctgctcgctg
      121 ctggccaagg tcggcggcga cgtggtcttc gtgctcaccg cgaaccactc gcagtctcag
      181 ggaaccacat cggtcgggca tcgggtgccc ctcatccccc cgctgggctc ggtcttcctg
      241 cacgacgcct cggagcagga ggtcgacgag tggctggcac gggtgccgcg ggcgtcgaca
      301 gccactccgg agcagctacg tcgcaacctc gacaaggtgc gtgagcgcgg gtactcgctc
      361 tcgctcatgc ccgagccttc ggtggaccgg atcgccttga tgaccgacta ctcgtcctcg
      421 gagcgactgc ccgagcacga gcggcagatg cacaagatga tcgccgacac cgcggccctc
      481 tacgagccgg acctcgagga gggtcagggc tatgacctgc actccatcgt ggtgccggtc
      541 cccggtccgc aaggccagcc accgatcgcg atgcggatgt ccgggttgcc ggccggtgcc
      601 acccgtgagc aggcccaggt gtgggtcact gcgctccgcc aagcggcatc aaccgcggcc
      661 gcacgcctgt gctcctgagc ggggaatcat ccggagccgt ctgccattcc gtcatccggc
      721 acaacgtgct ggtcgaacgg tagccggggg ccgcacgatg gcagggacgg gcgcgacggc
      781 cagctgggca cgtcctgacg aaagggagaa gcatgaacgc gagtgtcaag gctctcggct
      841 acgcagtggt ggacaccacc gatctggacg cgtggtaccg cttcggcgtg gagctgctgg
      901 gactgcaggc cgccgagcgc acgaaggacc ggttgctgct gcgcatggac gagtacgcct
      961 accgcctgga cgtgcgccga gcggagaccg acggcgtggt ggccctcggc tgggacgtcg
     1021 gctccgaggc cgcgctcgat gaaatcacca agcgcctcgc cgatgccggc tatgccgttg
     1081 cgcggcagga cgatgagacg gcggcggcgc ggcaagtgga cgccatcgcg aggttccgcg
     1141 acccggacga caactacgac ttcgagctgt tctggggcct gcgcaacgcc accgagccgt
     1201 tcgtgtcccc catcggtgcg actttcgtgg cgagcgagct ggggctcggg cacgccttcc
     1261 aggtcgtgcg cgacgaggag acctaccgcc agctgtactt cgacctgctc ggcttccgcc
     1321 tcagcgacca catcgacatg ccgggcggcg tctcgggcgt attcacgcac tgcaacccgc
     1381 gccaccactc cttcgcgttc gctgccgccc cgaaccgccc cgtcggcatc ggtcacctca
     1441 tgctcgaggt ggacgacctc gacatcgtcg ggcgggccta cgacaaggtc ctcgacggtg
     1501 cggcaccgat cctgtccacc ttcg
//
LOCUS       DASYFY010000705        14406 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1681433, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000705 DASYFY010000000
VERSION     DASYFY010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 14406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14406
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1681433"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1339)
                     /gene="ilvB"
                     /locus_tag="VGN19_14260"
     CDS             complement(<1..1339)
                     /gene="ilvB"
                     /locus_tag="VGN19_14260"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEV7197095.1"
                     /translation="MAQHARAKGPTSVTGAQSLVLSLEAMEVDTVFGIPGGAILPAYD
                     PLLDSVKVRHILVRHEQGAGHAAEGYAAATGKVGVCMATSGPGATNLVTAIADAYMDS
                     IPIVAITGQVSSASIGTDAFQEADIRGITMPITKHNYLVTDPDQIPRVIAEAFHIAST
                     GRPGPVLVDIAKDALQARTTFSWPPKFDLPGYRPVARPHSKQIREAARLIGEAKRPVL
                     YVGGGVVRGRASEELRRFVELTQIPVVTTLMARGTVPDSHPLHLGMPGMHGSVAAVTA
                     LQKSDLLITLGARFDDRVTGQLSTFAPEAKVIHADIDPAEISKNRTADVPIVGDVKEV
                     IGDLITAVTADHEAGRTGDYAAWREQTAGWKSTFPLGYTDSEDGTLSPQYVIERIGAL
                     SGPEATYVAGVGQHQMWAAQFVQYERPNSWINSGGLGTMGFAVPAAMGAKVAEP"
     gene            complement(1603..3321)
                     /gene="ilvD"
                     /locus_tag="VGN19_14265"
     CDS             complement(1603..3321)
                     /gene="ilvD"
                     /locus_tag="VGN19_14265"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013771873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEV7197096.1"
                     /translation="MTTTEPGTHDGVDIKPRSRDVTDGLEKAAARGMLRAVGMGDDDW
                     VKPQIGVASSWNEITPCNLSLDRLAKAVKDGVHAAGGYPLEFGTISVSDGISMGHEGM
                     HFSLVSREVIADSVETVMNAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFLYAGSI
                     LPGIAKLSDGSEKTVTIIDAFEAVGACSRGLMSREDVDAIERAICPGEGACGGMYTAN
                     TMASVAEAMGMSLPGSAAPPATDRRRDGFARKSGEAVVGLLRRGITARDIMTKEAFEN
                     AIAVVMAFGGSTNAVLHLLAIAHEADVDLTLDDFSRVGAKVPHLADVKPFGQYVMTDI
                     DRVGGVPVVMRALLDAGLLHGDCLTVTGKTMAENLAVISPPDVDGKVVRAMQQPIHKT
                     GGITILKGTLAPEGAVVKSAGFDSDVFTGTARVFDGERAAMDAVNDGSLKAGDVVVIR
                     YEGPKGGPGMREMLAVTGAIKGAGLGKDVLLLTDGRFSGGTTGLCVGHVAPEAVDAGP
                     IAFVRDGDQITLNVATGTLDLHVDPDELARRGVGFEPPASKYPRGVLGKYRKLVGSAS
                     RGAVCD"
     gene            complement(3400..3924)
                     /locus_tag="VGN19_14270"
     CDS             complement(3400..3924)
                     /locus_tag="VGN19_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEV7197097.1"
                     /translation="MTLASDDKVLILFRHAKAEQVLGKPDHERELTGRGTRDAEAAGQ
                     WLHEHELGAELVLCSTSTRTRQTWMAAERAGACGENVEYDEALYSANDAGVLQVVRDL
                     AKEAQVVLVVGHNPTMAMLASGLTDGDGSTQAHECLASGFPTCSLAVMRYSGPWHGLD
                     YGMAELERCHVARA"
     gene            4078..5193
                     /locus_tag="VGN19_14275"
     CDS             4078..5193
                     /locus_tag="VGN19_14275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011692477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent cysteine synthase family protein"
                     /protein_id="HEV7197098.1"
                     /translation="MPEAPRLVDAPARQPADRAWLDEAVRRIQADANRSADTHLVHVP
                     IPGLPDIDLYLKDESTHPTGSLKHRLARSLFLYALCNGELREGTTVIEASSGSTAVSE
                     AYFARMLGLPFIAVMVATTSVEKIALIEREGGRCHLVEDASEVYEAAHTLAADLGGHY
                     LDQFTYAERATDWRGNNNIAESIFEQMGRERHPVPRWVVVGAGTGGTSATIGRYVRYR
                     GLASEICVVDPERSAFLPAFLGDLDSVARACGSRIEGIGRPRVEPSFVPSVVDRMLLV
                     PDAASVAAMRFLSERTALRAGPSTGTNLVGALRLACELAERGEGGSIVSLLCDGAERY
                     AGTYRDDAWVASRGWDLAPHLAVLQQAWDDGVWEDGA"
     gene            complement(5222..5506)
                     /locus_tag="VGN19_14280"
     CDS             complement(5222..5506)
                     /locus_tag="VGN19_14280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020142870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEV7197099.1"
                     /translation="MTVRVVLPGLLRDLADGEAELPVELTAEASLGRVLDAAFAPWPI
                     LGSRIRDERGEIRRHVNIFVDGEDAKRLAGVATVVTPRSTVHVINAVSGG"
     gene            complement(5503..6588)
                     /locus_tag="VGN19_14285"
     CDS             complement(5503..6588)
                     /locus_tag="VGN19_14285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HEV7197100.1"
                     /translation="MSETVVGIGTRKGLWLARSRDRRSWQVEGPHFLMSEVLSLLFDT
                     RRATPRLLVGFRSSHWGPSLQHSDDLGATWTEHPEGSIKFPADTDTALKATWQLTADP
                     HDENVVWAGTEPQGLWRSEDAGETFELNRGLWNHPHRPEWGEGFGGGAIHTVLPNPAD
                     PASMLVAMSTGGVYNTRDGGESWQPGNTGIRAYFMPHNEFPEFGQCVHKVARDSANPA
                     RLYAQNHKGVYRSDDDGVTWTSIEEGLPTNFGMTAVAHPGRGDTVWLVPIASDGERIP
                     PKAELQVQRSDDAGATWRAQTVGLPAPCYTNVLRDAAGTDTHDEPGLYVGTRNGDVFA
                     SVDGGDSFARIAEQLPDVLCVRAVTLP"
     gene            complement(6645..7562)
                     /locus_tag="VGN19_14290"
     CDS             complement(6645..7562)
                     /locus_tag="VGN19_14290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018156514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HEV7197101.1"
                     /translation="MTLVTLPGQEWVDAVGAVPGLELTVWELDGPPPRADEVRVVVPP
                     YLGGGGRVAALRHTPGVELVQLLTAGYDDVKNALPFEVTLANAAGVHDASTAELAVAL
                     TLASLRDFPSFVQAQQEQRWLSTTIHPALADRRVLILGYGSIGRAVAARLLPFEVQVT
                     AVASRARAGDQLVASVHGVDELAYLLPSHDVVIVVVPLNEHTTKLVDDGFLAAMPDGA
                     LLVNVARGGVVDTDALLRHASLGRIRAALDVTDPEPLPIGHPLWTTQGILVTPHVGGA
                     STAFMPRATRLLQEQLGAYAVGRPLRNIV"
     gene            complement(7609..9165)
                     /gene="gatB"
                     /locus_tag="VGN19_14295"
     CDS             complement(7609..9165)
                     /gene="gatB"
                     /locus_tag="VGN19_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007928640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEV7197102.1"
                     /translation="MATALTDEIVDYDEALTRYDPVMGLEVHVELNTATKMFCGCATE
                     FGAAPNSQVCPVCLGLPGALPVVNEKAVESAIRIGLALNCEIAHWCRFARKNYFYPDM
                     PKNFQTSQYDEPIASEGYLDVQIPSATGEGTEVFRVAIERAHMEEDTGKSLHVGGATG
                     RIHGADHSLVDYNRAGIPLIEIVTKPITGAGERAPEVARAYVAALRELLRALGVSDVK
                     MEQGSLRCDANLSLRPKASESVSQEDIPLGTRTETKNVNSLRSVERAVRYEVTRQAAI
                     LDGGGSILQETRHWHEDTGVTTSGREKSDADDYRYFPEPDLVPVAPSREIVEALRQTL
                     PEPPEQRRRRLQADWGYSDLEMRDVGNAGAVQIIEETVAAGATPAAARKWWTGELSRR
                     ANLEGEPLEEYATARGVTPSTVAELDGMVQSGRLNDSMARQVLEGVLAGEGSPSEVAQ
                     SRGLELAQDDTALEAAVDQVIAANPDVAQKVRDGKVQAAGALIGQVMKELKGQADAGR
                     ARELILSRLT"
     gene            complement(9171..10685)
                     /gene="gatA"
                     /locus_tag="VGN19_14300"
     CDS             complement(9171..10685)
                     /gene="gatA"
                     /locus_tag="VGN19_14300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEV7197103.1"
                     /translation="MNSEITRFSAAEIAHALDSRELSSVEVVQAHLDRIASVDADVHA
                     YLHVDGKGALEAAQAVDDRRSAGEDLHVLAGVPIAVKDVLVTKGLPTTCGSKILQGWL
                     PPYDATVVSRLKAAGMPILGKTNMDEFAMGSSTEHSAYGPTHNPWDLTRIPGGSGGGS
                     SAVVAAYEAPWAIGTDTGGSIRQPAAVTGTVGVKPTYGGVSRYGLVALASSLDQAGPC
                     TRTVLDAALLHSVIGGHDPMDSTSIDAPTPPVVEAARRGDVRGMRIGVIKELGGQGYQ
                     AGVAARFEESVQLLQDAGAEVVEVSCPSFDYALAAYYLILPSEASSNLAKFDAMRYGL
                     RVLPDGVEDPSAEQVMAATRDAGFGDEVKRRIILGTYALSSGYYDAYYGQAQKVRRLI
                     ANDFTKAFGQADVLVSPTSPTTAFKLGEKLDDPMSMYLQDVATIPANLAGVPGMSLPS
                     GLAEDGLPTGIQILAPATRDERLYGVGSALERMLVEKWGGPLLSRAPELTAKGA"
     gene            complement(10708..11004)
                     /gene="gatC"
                     /locus_tag="VGN19_14305"
     CDS             complement(10708..11004)
                     /gene="gatC"
                     /locus_tag="VGN19_14305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003973500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEV7197104.1"
                     /translation="MSALSRADVAHLAGLARIDLSDPELDRMVGELAVILESVAKVQQ
                     VAADDIEPMSHPLPITNVTRPDEVRPSLGAQAALAAAPEQEQQRFSVPRILAED"
     gene            11075..11515
                     /gene="mce"
                     /locus_tag="VGN19_14310"
     CDS             11075..11515
                     /gene="mce"
                     /locus_tag="VGN19_14310"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006592212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEV7197105.1"
                     /translation="MTAMPTELFTAIDHVGVAVTDLDAAIAFYTETFGMELAHQEVNE
                     EQGVREAMMAVGGSGSHIQLLAPLTPESTIAKFLERSGPGVQQVAYRVEDVEAVSAIL
                     RERGLRLLYDAPRRGTSNSRVNFIHPKDAGGILVELVQPAHETH"
     gene            11671..13008
                     /gene="ccrA"
                     /locus_tag="VGN19_14315"
     CDS             11671..13008
                     /gene="ccrA"
                     /locus_tag="VGN19_14315"
                     /EC_number="1.3.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043880 - crotonyl-CoA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crotonyl-CoA carboxylase/reductase"
                     /protein_id="HEV7197106.1"
                     /translation="MQDIRDAILSGDRTQETYAGLAVPESYRAVTVHKDEVDLFEGLA
                     TRDKDPRKSLHVDDVPVPELAPGEALVAVMASAINYNTVWTSIFEPLSTFGFLERYGR
                     TSEYAKRHDLPYHIVGSDLAGVVLRTGPGVQKWKPGNEVVAHCLSVELESADGHNDTM
                     LDPEQRIWGFETNFGGLAELAIVKTNQLMPKPDHLTWEEAAAPGLVNSTAYRQLISRN
                     GAAMKLGDTVLIWGASGGLGSYATQMALAGGATPVCVVSSPEKAEICRAMGAELVIDR
                     NAEDYRFWKDEHTQDQKEWKRFGGRIRELTGGKDVDIVFEHPGRETFGASTYVARKGG
                     TIVTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANDLISRGLIHPTLSKTY
                     AMEDVGQATFDVHRNLHQGKVGVLTLAPESGLGVSNPAKRAQHEQAINRFRNA"
     gene            13057..14394
                     /locus_tag="VGN19_14320"
     CDS             13057..14394
                     /locus_tag="VGN19_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEV7197107.1"
                     /translation="MSVLTRWREFQRSQREALRESNLLHPSGSDDLNGQADRPGATRV
                     VSGPELLRDLLPDGATEGSPGHAPSTGPIPSDADQHERDAELAAAGELPYGRAGRPLN
                     RQSPFYLGFVGAIGVLAAILLWETVGRLTTVLTLIVVSFFLTLALNPLVEFFTRRRLS
                     RPWAVAVVFFGLVGVFTLLGLVVVPPVVTQGSALIKQAPDWVNTVLNSGFVRNLDTHY
                     GVVSKIQAEFNKKLTDSTFISQVFGGVLGVGAAVIGGIFQAFTVLVLTLFLLASFPRV
                     KQATFDMVPASRRPRVISLSEEIMRRTGSYAIGQVAVATVNAFCSWIMMSIVGIQYAA
                     VLAVAVGFLGLIPMVGATSGATLVCLVAVFDEPKKAVIAAVYYVVYQQVENYLVMPRI
                     MAHTVLVPGAMTVVAALAGGTLLGALGALLAIPVAAGLLLLYEEVLLPRQRRH"
BASE COUNT         2202 a         5064 c         4868 g         2272 t
ORIGIN      
        1 cgggctcggc caccttggcc cccatggccg ccgggaccgc gaatcccatc gtgccgaggc
       61 ctcccgagtt gatccagctg ttcgggcgct cgtactgcac gaactgcgcc gcccacatct
      121 ggtgctgccc gacacccgcc acgtaggtcg cctccggccc cgacagggca ccgatgcgct
      181 cgatgacgta ctgcggcgac agggtgccgt cctcgctgtc cgtgtagccg agcgggaagg
      241 tcgacttcca gcccgccgtc tgctcgcgcc aggccgcata gtcgccggtc ctgcccgcct
      301 cgtggtcggc cgtgaccgcg gtgatgagat cgccgatgac ctccttgacg tcacccacga
      361 tcggcacgtc cgcggtccga ttcttcgaga tctcagccgg gtcgatgtcg gcgtggatga
      421 ccttggcctc aggcgcgaag gtcgacagct gaccggtgac ccggtcgtcg aaccgggccc
      481 ccagcgtgat gagcagatcc gacttctgca gggcggtcac cgcggcgacc gagccatgca
      541 tgccgggcat gcccagatgg agcggatggc tgtcagggac cgtgccgcgg gccatcaatg
      601 tcgtcacgac cgggatctgg gtgagctcga cgaagcgacg cagctcctca ctggcccggc
      661 cgcgaaccac gccgccgccg acatagagca ccgggcgctt cgcctcgccg atgaggcggg
      721 cggcttcgcg gatctgcttg ctgtgcgggc gcgccaccgg ccggtatccc ggcaggtcga
      781 acttcggcgg ccacgagaac gtcgtcctgg cctgcagggc gtccttggcg atgtccacca
      841 gcaccggacc cgggcgaccc gtcgaggcga tgtggaaggc ctccgcgatg acgcgcggga
      901 tctggtccgg gtcggtgacc aggtagttgt gcttggtgat cggcatcgtg atgccgcgga
      961 tgtcggcctc ctggaaggcg tccgtcccga tggaggccga gctcacctga cccgtgatgg
     1021 ccactatcgg gatcgagtcc atgtaggcgt cggcgatcgc tgtgaccagg ttcgtcgcac
     1081 cggggcccga ggtcgccatg cagaccccga ccttgccggt ggcggcggca tacccctcag
     1141 cggcgtgccc ggctccctgc tcgtgacgga cgaggatgtg gcgcaccttc acggagtcca
     1201 acagcgggtc gtatgccggc aggatcgcgc caccggggat gccgaagacc gtgtcgacct
     1261 ccatcgcctc gagcgacagg accaggctct gcgccccggt caccgaggtg ggccccttgg
     1321 cacgggcgtg ctgggccatc tgggacgggc tgggcgccgg cgtcgaagcc ggtttcgcgt
     1381 cgctcactgt ctctaccgct tctttcggtt ctcgctcgtg tctggccaca aaaaaacccc
     1441 ccagtcccag gctgggacga cggagggcag cgcgctggct ctcgcggaga gtgcctgcgc
     1501 gctaaggaag tacgagaatt cgtgccaccc ctgaactctc cccggcgccg cctcacgtgt
     1561 caacgggcga gacacccggt cccacgatcc ggaccagttg cgtcagtcac agaccgcacc
     1621 gcggctcgcg ctgccgacca gcttgcggta cttgcccaac acacccctgg ggtacttcga
     1681 cgcgggcggc tcgaagccca ctccacggcg agccagctcg tccgggtcga cgtgcaggtc
     1741 gagcgtcccg gtcgcgacgt tcagggtgat ctggtcgccg tcacggacga acgcgatcgg
     1801 cccggcatcc accgcttccg gagcgacgtg gcccacacag aggccggtcg tcccaccgga
     1861 gaaccgaccg tcggtcagca agagcacgtc cttgccgagc ccagcgccct tgatcgcgcc
     1921 ggtcaccgcc agcatttcgc gcatgccggg accacccttg ggaccctcgt accggatgac
     1981 cacgacatcg ccggccttga gcgacccatc gttgaccgca tccatggctg cccgctcgcc
     2041 gtcgaaaacc cgggcggtac cggtgaagac gtccgagtcg aaccccgctg acttcacgac
     2101 cgcaccctcc ggcgccaagg tccccttgag gatcgtgatg ccgccggtct tgtggatcgg
     2161 ctgctgcatc gcccggacga ccttgccgtc gacatcgggc ggcgagatca cggcgaggtt
     2221 ctcggccatc gtcttgccgg tgacggtgag gcagtcgccg tgcagcagcc ccgcgtcgag
     2281 cagggcccgc atgaccaccg gcacgcctcc gacccggtcg atgtccgtca tgacgtactg
     2341 gccgaacggc ttgacgtcag ccaggtgcgg gaccttggcc cccacccggc tgaagtcgtc
     2401 cagggtgagg tcgacgtcgg cctcgtgcgc gatggccagc aggtgtagca ccgcgttggt
     2461 cgagccaccg aacgccatga cgacggcgat ggcgttctcg aacgcctcct tggtcatgat
     2521 gtcccgagcc gtgatgcctc gtcgcagcag cccgacaacg gcttcccccg acttgcgggc
     2581 gaagccgtcg cgacggcggt cggtcgccgg tggcgccgcc gaccctggca gcgacatgcc
     2641 catcgcctcg gcgaccgagg ccatcgtgtt ggcggtgtac atcccaccgc aggcgccctc
     2701 gcccgggcag atcgcccgct cgatcgcgtc cacgtcctca cgcgacatca gcccgcgcga
     2761 gcaggcgccc accgcctcga aggcgtcgat gatggtgacg gtcttctcgg acccgtcgga
     2821 gagcttggcg atccccggga ggatcgaccc ggcgtacagg aacacgctgg caaggtcgag
     2881 gcgcgcggcc gccatgagca tgccgggcag cgacttgtca caaccggcca acagcacgga
     2941 gccgtcgagc cgctcggcgt tcatcaccgt ctcgaccgag tcagcgatga cctcgcggct
     3001 gaccagcgag aagtgcatgc cctcgtggcc catggagatc ccgtccgaca ctgagatcgt
     3061 gccgaactcc agcgggtatc ccccggccgc atggacgccg tccttgacgg ccttggcgag
     3121 ccggtcgagc gagaggttgc agggggtgat ctcgttccac gagctggcga ccccgatctg
     3181 cggcttcacc cagtcgtcgt ctcccatccc gaccgcgcgc aacatgccgc gcgcggcagc
     3241 cttctcgagg ccgtccgtga cgtcgcggct gcggggcttg atatcgacgc cgtcgtgggt
     3301 cccaggctcg gtggtcgtca tgcgcgcagt ctaggacgac ggtccacaag gtgggacgcc
     3361 ggtctcactg tgtaagcgcg ccacgaggca tgctcagact cacgcacggg cgacatggca
     3421 ccgttcgagc tcggccatcc cgtagtcgag cccgtgccac ggtccggagt accgcatcac
     3481 cgccagcgag caggtgggaa agccagaggc gaggcactcg tgggcctggg tcgaaccgtc
     3541 gccgtcggtc aacccgctcg ccagcatcgc catggtgggg ttgtgcccga cgaccaggac
     3601 gacctgcgcc tccttggcca agtcgcggac gacctgcagg acaccggcat cgttggcgga
     3661 gtagagcgcc tcgtcgtact ccacgttctc gccacacgcc ccggcccgct cggcggccat
     3721 ccaggtctgc cgggtcctgg tcgacgtcga gcagagcacc agctccgcac cgagctcgtg
     3781 ctcgtgcagc cactggcccg cagcctccgc atcgcgggtg ccgcgaccag tcagctcacg
     3841 ctcgtggtcc ggcttgccga ggacctgctc ggccttggca tgccggaaca gaatgagcac
     3901 cttgtcatca ctggccaggg tcatgacctc agcatggacc cacaacgagt caacggacag
     3961 tcttgacagc gccgacggcg gctgccgcta gcctcgtccc accacgacga ggtgcggttc
     4021 attcgacgcg accgctcggc ataccccgtc cttgatccgt tgaggtgaaa cccgcacatg
     4081 cccgaggcgc cacggctcgt cgacgcaccc gcccgccagc cggccgaccg ggcctggctc
     4141 gacgaggcgg tgcggcggat ccaggcggat gccaaccgca gcgccgacac ccacctggtg
     4201 cacgtgccga ttcccggact tccggacatc gacctctacc tcaaggacga gtcgacgcac
     4261 cccaccggga gcctgaagca ccggctggcc aggtcgctct tcctgtacgc cttgtgcaac
     4321 ggcgagctgc gcgagggcac caccgtcatc gaggcttcca gcgggtcgac tgcggtcagt
     4381 gaggcctatt tcgctcggat gttggggctg ccgttcatcg ccgtcatggt cgccacgacc
     4441 agcgtcgaga agattgctct catcgagcgc gagggcggca gatgtcacct cgtcgaggac
     4501 gcgagcgagg tctatgaggc cgcgcacacg ctggctgcgg acctcggcgg ccactatctc
     4561 gaccagttca cctatgcgga gcgggccacc gactggcgcg gcaacaacaa catcgccgag
     4621 tcgatcttcg agcagatggg gcgcgaacgg caccccgtgc ctcgctgggt cgtcgtgggc
     4681 gccggaaccg gtggcaccag cgcgacgatc gggcggtatg tgcgctatcg ggggctggcc
     4741 agtgagatct gtgtggtgga tcccgagcgg tcggccttcc ttcccgcctt cctcggggac
     4801 ctggactccg tggcgcgggc ctgcgggtcg cgtatcgaag gcatcgggcg gccgcgggtt
     4861 gagccgagct tcgttccttc ggtggtcgac cgcatgctgc tggtgcccga cgcggcctcg
     4921 gtggcagcca tgcggttcct gagcgagcgg acggcgctgc gcgctggtcc gtccaccgga
     4981 accaacctcg tcggcgccct gcggctggcc tgcgagctgg ccgagcgtgg cgagggcggc
     5041 agcatcgtgt ccctgctgtg cgacggtgcc gagaggtatg ccgggacgta tcgcgacgac
     5101 gcgtgggtcg cctcacgcgg gtgggacctc gcgcctcatc tcgcggtcct ccaacaggcc
     5161 tgggacgacg gcgtctggga ggacggggcc taggaggccg gccgaacgcg cagccctgtt
     5221 gtcagccccc ggacaccgcg ttgatgacat gcaccgtgga ccgaggcgtc acgacagtgg
     5281 ccacgccggc cagtcgtttg gcgtcctcgc cgtcgacgaa gatgttgacg tggcgccgga
     5341 tctcgccccg ctcgtccctg atgcgcgacc cgagaatggg ccacggcgca aaggcggcgt
     5401 ccaggacccg cccgagcgag gcttctgctg tcagctcgac cggcagctcg gcctcgccgt
     5461 cggccaggtc acgcagcagg ccaggaagca ccacccgcac ggtcatggca gggtgaccgc
     5521 ccgaacacac agcacgtccg gcaactgctc ggcgattcgg gcgaacgagt caccgccatc
     5581 gacggaggcg aacacgtcgc cgttgcgcgt gccgacatac aagccgggtt cgtcgtgggt
     5641 gtcggtgcca gcggcgtcgc gaaggacgtt ggtgtagcac ggggccggca gccccaccgt
     5701 ctgggcacgc caggtcgcac ccgcgtcgtc gctgcgctgc acctgcagct ccgccttggg
     5761 cgggatccgc tcaccgtccg aggcgatggg caccagccag accgtgtcgc cgcgtccggg
     5821 gtgggcgacc gcagtcatcc cgaagttggt gggcagcccc tcctcgatcg acgtccacgt
     5881 cacaccgtca tcgtccgagc ggtagacacc cttgtggttc tgcgcgtaca gccgagctgg
     5941 gttcgccgag tcacgtgcga ccttgtggac acactggccg aactcgggga actcgttgtg
     6001 gggcatgaag taggcacgga tgcccgtgtt gcccggctgc caggactccc cgccgtcgcg
     6061 ggtgttgtag accccgcccg tactcatggc cacgagcatc gatgccgggt cagccgggtt
     6121 gggcagcacc gtgtggatgg ccccgccacc gaacccctcg ccccactctg gtcggtgggg
     6181 gtggttccac aggccccggt tgagctcgaa cgtctccccc gcatcctcac tgcgccacag
     6241 cccctgcggc tcggtccccg cccagacgac gttctcgtcg tgcggatccg ccgtcagctg
     6301 ccaggtggcc ttcagcgcgg tgtccgtgtc ggcggggaac ttgatcgatc cttcggggtg
     6361 ctcggtccag gtcgcgccga gatcgtccga gtgctgcagg gagggtcccc aatgcgacga
     6421 acggaaaccg accaacagcc gcggcgtcgc gcgccgagtg tcgaagagca gcgacaggac
     6481 ctcgctcatg aggaagtgcg gaccctcgac ctgccacgac ctgcggtcgc ggctgcgtgc
     6541 cagccagagc cccttacgtg tgccgattcc caccacggtt tcactcatga gcccagcatg
     6601 gcaccgaggg gtgacggtcc gcccgtcacc ggctcaaaca agcctcacac gatgttgcgc
     6661 agcggccgcc ccacggcata cgccccgagc tgctcctgga gcagccgggt ggcgcgtggc
     6721 atgaaggctg tcgaggcgcc acccacgtgc ggggtgacca ggatgccctg cgtcgtccag
     6781 agtgggtgcc cgatcggcag gggctcgggg tcggtgacat ccagggcagc ccggatccgc
     6841 cccagcgaag cgtgccgcag cagcgcgtcg gtgtccacga cacccccacg ggccacgttc
     6901 acgagcagcg cgccgtccgg catggccgcc aggaacccat catcgacgag cttggtcgtg
     6961 tgctcgttga gcggcaccac cacgatgacg acgtcgtgcg agggcagcag gtaggccagc
     7021 tcgtcgacac catggaccga agccaccagc tggtcaccgg cccgggccct gctcgccacg
     7081 gcagtcacct gcacctcgaa cggcaacaac cgagcggcga cggcccggcc tatcgagccg
     7141 taccccagga tcagcacgcg acggtccgcg agcgccggat ggatcgtcgt cgacagccac
     7201 ctctgttcct gctgggcctg cacgaacgac gggaaatcgc gcagcgatgc cagggtcagc
     7261 gccactgcaa gctcagccgt cgacgcgtcg tgcacccccg cagcgttcgc gagcgtgacc
     7321 tcgaacggca aggcgttctt gacatcgtcg tagccggccg tgagcagctg gacgagctca
     7381 acgcccgggg tatgccgcag ggcggccacc cgtccgccgc cacccaggta cggcggcacc
     7441 accaccctga cctcgtcggc ccgtggaggc ggcccgtcga gctcccacac ggtgagctcg
     7501 agcccgggga ccgctcccac ggcgtcgacc cactcctggc caggcagcgt caccagagtc
     7561 atgccgtcac gctagatggt caggtcaacc ggctcgggag cagcccgctc aggtcagccg
     7621 gctcaggatc agctcgcgcg ccctgcccgc atcggcctgg cccttgagct ccttcatgac
     7681 ctggccgatc agagcgcccg cggcctgcac cttgccgtcg cgcaccttct gggccacgtc
     7741 ggggttcgcg gcgatcacct ggtcgactgc tgcttcgagc gccgtgtcgt cctgcgccag
     7801 ctcgagccca cgggactgcg ccacctcgga gggagacccc tcaccggcca gcactccctc
     7861 gagaacctgt cgggccatgg agtcgttcag gcgacccgac tgcaccatgc cgtcgagctc
     7921 ggcgacggtc gacggcgtca cgccacgggc ggtcgcgtac tcctcgagcg gctcgccctc
     7981 gagattggct cggcgggaca gctcgcccgt ccaccacttg cgcgcggcag caggcgtagc
     8041 gccggctgcg accgtctcct cgatgatctg cacggctccg gcgttgccga cgtcgcgcat
     8101 ctccagatcg ctgtagcccc agtccgcctg cagccgtcga cgccgctgct cgggcggctc
     8161 gggaagggtc tgccgcaagg cctcgacgat ctcccgggac ggggccaccg gcaccaggtc
     8221 cggctcgggg aagtagcggt agtcgtcggc atcggacttc tcacgaccac tcgtggtgac
     8281 gccggtgtcc tcgtgccagt gccgcgtctc ctggaggatc gagcctccac cgtcgaggat
     8341 cgcggcctgc cgggtgacct cgtaccgcac cgcccgctcc acgctgcgca gcgagttgac
     8401 gttcttggtc tcggtacgcg taccgagcgg gatgtcctcc tgcgacacgc tttcggaggc
     8461 cttgggccga agagagaggt tggcgtcgca acgcagcgac ccctgctcca tcttgacgtc
     8521 ggatacgccg agcgcgcgca acagctctct cagggcggcg acataggcgc gggcgacctc
     8581 gggcgcgcgt tccccggcgc cggtgatcgg cttggtgacg atctcgatga gcgggatacc
     8641 cgcacggttg tagtcgacca gtgagtggtc cgcgccgtgg atgcgtccgg tggcgccgcc
     8701 gacgtgcagc gacttgccgg tgtcctcctc catgtgggcg cgctcgatgg ccacccggaa
     8761 cacttcggtg ccctcccccg tcgcgctggg gatctgcacg tcgaggtagc cctcggaggc
     8821 gatcggctcg tcgtactggg aggtctggaa gttcttcggc atgtccggat agaagtagtt
     8881 cttccgggcg aaccggcacc agtgcgcgat ctcgcagttg agcgccaggc cgatgcggat
     8941 ggcggactcg acggccttct cgttgacgac cggcagggcg ccaggcaggc ccagacacac
     9001 ggggcagacc tggctgttgg gcgcagcacc gaactccgtg gcgcaaccgc agaacatctt
     9061 ggtggcggtg ttcagctcga cgtggacctc gaggcccatc accgggtcgt agcgcgtgag
     9121 cgcctcgtcg tagtcgacga tctcgtcagt cagtgccgtg gccatcgggc tcacgctccc
     9181 ttcgcggtca gctcgggggc gcgggacagc aagggtccgc cccacttctc gacgagcatt
     9241 ctttccagcg ccgacccgac gccgtagagg cgctcgtcgc gggtcgccgg agcgaggatc
     9301 tggatgccgg tggggaggcc gtcctcggcc agcccgctcg gcagtgacat gccgggcact
     9361 ccggcgaggt tggccgggat cgtcgcgacg tcctgcaggt acatcgacat cgggtcgtcg
     9421 agcttctcgc ccagcttgaa cgcggtggtc ggcgaggtcg ggctgaccag gacgtcggcc
     9481 tgaccgaacg ccttggtgaa gtcgttggcg atcagacgac gcaccttctg ggcctggccg
     9541 tagtaggcgt cgtagtagcc gctggacaac gcgtaggtgc ccaggatgat gcggcgcttc
     9601 acctcgtcac cgaaaccggc gtcccgggtc gccgccatga cctgctcggc gctcgggtcc
     9661 tcgaccccgt cgggcaggac ccgtaggccg tacctcatgg cgtcgaactt ggccaggttg
     9721 gatgatgcct cgctgggcag gatcaggtag tacgcagcca gggcgtagtc gaagctcggg
     9781 caggacacct cgaccacctc ggccccggca tcctggagca gctggacgga ctcctcgaag
     9841 cgcgcggcaa cacccgcctg gtacccctgg ccgccgagct ccttgatgac gccgatccgc
     9901 atgccccgaa cgtcgccgcg tcgggcggcc tcgacgaccg gcggggtggg ggcgtcgatc
     9961 gacgtggagt ccatcgggtc gtggcccccg atgaccgagt gcagcagggc cgcgtcgagc
    10021 acggtgcgcg tgcacgggcc ggcttggtcg aggctcgagg cgagggcgac gagcccgtag
    10081 cgcgacaccc cgccgtacgt cggcttcacg ccgacggtgc cagtgaccgc ggccggctgc
    10141 cggatcgacc caccggtgtc agtgccgatc gcccacggcg cttcgtatgc cgcgacgacg
    10201 gcactcgacc caccgccgga cccgccgggg atacgggtca ggtcccacgg gttgtgagtg
    10261 gggccgtagg ccgagtgctc ggtggaggaa cccatcgcga actcgtccat gttggtcttg
    10321 cccaggatcg gcatcccggc ggccttgagg cggctgacga ccgtggcgtc gtacggcggg
    10381 agccagccct gcaggatctt ggatccacag gtcgtcggga ggcccttggt caccaggacg
    10441 tccttgaccg cgatcgggac cccggccagg acgtgcaggt cttcaccggc ggaacggcgg
    10501 tcgtcgaccg cctgggcggc ctcgagcgcc cctttgccgt cgacgtggag ataggcgtgg
    10561 acgtcggcgt cgacactggc gatgcggtcg agatgcgcct gcacgacctc caccgagctg
    10621 agctcgcggg agtcgagggc atgggcgatc tcggccgcgc tgaaacgggt gatctcggag
    10681 ttcacgggct ggtccttggg ggtctggtca gtcttcggcg aggatgcggg gcacggagaa
    10741 gcgttgctgc tcctgctccg gggcggccgc gagggcggcc tgcgcaccga gagacggccg
    10801 gacctcgtcc ggacgggtga cgttggtgat cggcaggggg tgtgacatgg gctcgatgtc
    10861 gtcggcagca acctgctgga ccttggcgac ggactccagg atgaccgcca gctctcccac
    10921 catgcggtcg agctcggggt cggaaaggtc gatgcgggcg aggccggcca ggtgcgcgac
    10981 gtcggcccgg gacagtgcgg acatgtgcgt cagtctaggc cgcgtgacgc agcactcatg
    11041 tcgcagcgcg tgtcccccgt cctagggtga aggcatgact gccatgccca ccgagctgtt
    11101 caccgccatc gaccacgtcg gggtcgccgt caccgatctc gacgccgcca tcgcgttcta
    11161 caccgagacc ttcgggatgg agctggccca ccaggaggtc aacgaggagc agggcgtccg
    11221 cgaagcgatg atggccgtgg ggggcagcgg gtcgcacatc cagctgctgg ctccattgac
    11281 tccggagtcg accatcgcca agttcctgga gcgttctggc cccggcgtcc agcaggtggc
    11341 ctatcgggtc gaggacgtgg aggccgtcag cgcgatcctg cgcgagcgcg ggctgcgcct
    11401 gttgtacgac gctccgcggc ggggcacctc gaactcgaga gtgaacttca tccaccccaa
    11461 ggacgcgggc ggcatcctgg tcgagctggt gcagcccgcc cacgagaccc actgagcggg
    11521 ctggcgctgc gacccccgca cgagcacgcc gtgagccacg tcaccgcgtg accggagtct
    11581 cagtccgacg cgaacgcgca tgtgccgcag tagtttcggc tgcagccgtc cgaccgccga
    11641 cccgtcttta cgagccgagg agccacaccg atgcaggaca tccgcgacgc catcctctcc
    11701 ggggaccgca cccaggagac gtatgccgga cttgccgtcc ccgagtccta ccgcgccgtc
    11761 acggtgcaca aggacgaggt agacctcttc gagggtctag ctacccgcga caaggacccc
    11821 cgcaagtcgc tgcacgtcga cgacgtgccg gttcccgagc tcgccccggg cgaggccctg
    11881 gtcgcggtga tggccagcgc catcaactac aacacggtgt ggacctcgat cttcgagccg
    11941 ctgtccacct tcggcttcct cgagcgctac gggcgcacct cggagtacgc caagcgtcac
    12001 gacctgccgt accacatcgt gggctccgac ctggccggcg tcgtgctgcg caccggccct
    12061 ggcgttcaga agtggaagcc cggcaacgag gtcgtcgcgc actgcctgtc cgtcgagctg
    12121 gagagtgcgg acggccacaa cgacaccatg ctcgacccgg agcagcgcat ctggggcttt
    12181 gagacaaact tcggaggcct ggccgagctg gccatcgtca agacgaacca gctcatgccc
    12241 aagcccgacc atctgacctg ggaggaagcc gcggcccccg gtctggtgaa ctccacggca
    12301 taccgccagc tcatctcgcg caacggggcc gccatgaagc tgggcgacac cgtcctgatc
    12361 tggggcgcct ccggcggcct cggctcgtat gccacgcaga tggctctggc gggcggcgcg
    12421 acgccggtct gcgtcgtgtc ctcccccgag aaggccgaga tctgccgcgc gatgggtgcc
    12481 gagctcgtga tcgaccgcaa cgccgaggac taccggttct ggaaggacga gcacacccag
    12541 gaccagaagg agtggaagcg cttcgggggt cgtatccgcg agctcaccgg tggcaaggac
    12601 gtcgacatcg tgttcgagca cccgggccgt gagacgttcg gcgccagcac ctacgtggcg
    12661 cgcaagggcg gcacgatcgt gacctgcgct tccacgagcg ggtacatgca cgagtacgac
    12721 aaccgctacc tgtggatgag cctcaagcgg atcatcgggt cgcacttcgc caactaccgc
    12781 gaggcctggg aagccaacga cctgatcagc cgcgggctga tccacccgac gctgtccaag
    12841 acgtacgcca tggaagacgt gggccaggcg accttcgacg tccaccgcaa cctgcaccag
    12901 ggcaaggtcg gcgtcctcac gcttgccccg gagagcgggc tcggcgtgtc caacccggcc
    12961 aagcgagccc agcacgagca ggccatcaac cggttccgca acgcctgacc tgcaccgttc
    13021 gcgatctgga ccggtcacgt gccatagggt cagggcatgt ccgtgctgac ccgatggcgc
    13081 gagttccagc gcagccaacg cgaagccctt cgcgagagca acctgctcca cccgagcggt
    13141 tcggacgacc tgaacgggca ggcagatagg cccggcgcca cgagggtggt gtccggcccc
    13201 gagctgcttc gcgacctgtt gcccgatggc gccaccgagg gctcccccgg gcacgccccg
    13261 tcaacgggac cgatcccctc agacgccgac cagcacgaac gcgacgccga gctggccgct
    13321 gctggcgagc tgccctacgg ccgcgcgggg cgcccgctga accgtcagtc gcccttctac
    13381 ctcggtttcg tgggggccat cggggtgctg gccgccatcc tgctgtggga gacggtgggc
    13441 cggctcacca ccgttctgac cctgatcgtc gtctcgttct tcctcacgct cgcgctcaac
    13501 cccctggtcg agttcttcac ccgacgccgg ctgagtcggc cgtgggcggt cgcggtcgtc
    13561 ttcttcgggc ttgtcggcgt gttcacgttg ctgggcctgg tcgtcgtgcc tcccgtggtg
    13621 acccaggggt ccgccctgat caagcaggcc cccgactggg tcaacacggt gctcaacagc
    13681 gggttcgtcc gcaacctcga cacgcactat ggcgtggtca gcaagattca ggccgagttc
    13741 aacaagaagc tgaccgacag cacgttcatc tcccaggtgt tcggcggagt cctcggggtc
    13801 ggggccgccg tgatcggcgg gatcttccag gccttcaccg tgctggttct caccctcttt
    13861 ctgctggcct cctttccccg ggtcaagcag gcgaccttcg acatggtgcc ggcctcacgc
    13921 cgccctcggg tgatctcgct gtccgaggag atcatgcggc gcaccggctc ctacgccatc
    13981 ggccaggtcg cggtggccac cgtcaacgcg ttctgttcgt ggatcatgat gtccatcgtc
    14041 ggcatccagt acgcggccgt gctggcggtc gcagtgggct tcctgggcct catcccgatg
    14101 gtgggagcca ccagtggcgc caccctggtg tgcctcgtgg ccgtcttcga tgagcctaag
    14161 aaggccgtca tcgctgccgt gtactacgtc gtgtaccagc aggtggagaa ctacctcgtc
    14221 atgccgcgca tcatggccca cacggtcttg gtgccgggcg cgatgacggt ggtcgcggcc
    14281 ctcgccggag gcacgctcct cggcgcgctg ggggcgttgc tggccatccc ggtcgcggcc
    14341 gggctgctgc tgctctacga agaagtcctg ctaccgcggc agcgacgcca ctagccccgc
    14401 agcgcc
//
LOCUS       DASYFY010000706         1822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_577350, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000706 DASYFY010000000
VERSION     DASYFY010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577350"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..579)
                     /locus_tag="VGN19_14325"
     CDS             complement(<1..579)
                     /locus_tag="VGN19_14325"
                     /inference="COORDINATES: protein motif:HMM:NF024872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7197108.1"
                     /translation="MIETAAQPGPSALTMRVSDVLARTDQRLREGGSAAPRPWATGFS
                     PLDSFLSGGVRPGELVLLAGPQGLGKTTMALQLCRHVLTQGCPVLYVSYEHDAVNLLE
                     RLLAAEAGERAGVDAVPLKEVRALLEGDGSATSLSDKLASTPGGAEALSVVAVDLEHL
                     HVLRGGVATDVATITAAVAEVTAAEGSPPLVLV"
     gene            692..>1822
                     /locus_tag="VGN19_14330"
     CDS             692..>1822
                     /locus_tag="VGN19_14330"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEV7197109.1"
                     /translation="MATTGPGSWGVGSRIWDDPTEPITVVVRVGMLALCGLLVALQEA
                     GATAGPQLAMLVAVALMASIPMRPSPVSRLRPLGEAALAAAVIGSSLVLPTALLPYVV
                     VPALAAGLTSGVIGAVSATTLTLLVLTAARYVAGDLFNRLELTLVAEWIGLALATGLV
                     GAWARALGRRAGLVTDTYIAAHRLLTRLRDVARQLPAGLDEVTLAQQVLTSMADELDF
                     ERGGLYTVSEAGVLAPLAFAGADRVGWAPTLDEGVWAKVWRSGNPAQQGGQFTDQTSG
                     HSAVLALRLGERRIGLIGIERAAGQWSHRQLSRAQNLADDAALRIDTGQLFSEIRALA
                     TVEERRRLAREIHDGIAQEIASLGYLVDDLRARTQDSTVRTEL"
BASE COUNT          236 a          660 c          663 g          263 t
ORIGIN      
        1 gaccagcacc agcggtggcg agccttcggc cgccgtgacc tcggcgaccg cagcggtgat
       61 ggtcgccacg tccgttgcca ccccaccgcg caggacgtgc aggtgctcga ggtcgaccgc
      121 gacgaccgac agcgcctcgg cgccgccggg ggtgctggcg agcttgtccg acagcgacgt
      181 cgccgatccg tcaccctcca gcagggcccg cacctccttg agcgggaccg cgtcgacacc
      241 ggctcgctcc ccggcctcgg ctgcgagcag tcgctcgagc aggttgaccg cgtcgtgctc
      301 gtagctcacg tacagcaccg ggcagccctg ggtcagcacg tgccggcaca gctgcagggc
      361 catcgtggtc ttgcccaggc cctgcggacc tgccagcagc accagctccc ctggtcgcac
      421 cccaccggac aggaacgagt cgagggggct gaacccggtg gcccagggcc gtggagcggc
      481 cgatccgccc tcccgcaacc gttggtcggt gcgggcgagc acgtcggaga cgcgcatggt
      541 gagcgcggag ggacccggtt gcgcagctgt ctcgatcacg tgcgcatcga accagacggt
      601 gaccttcagc gggggcgatt gcgccatctg ggtcgcagtc ccggtgggtc ggagtggagg
      661 ccaggcggtg cgatgtgcga cggtcgtgcc catggcgacg accggtccgg gctcctgggg
      721 cgtcgggagc cgcatctggg acgacccgac cgaacccatc accgttgtcg tccgcgtcgg
      781 catgctggcc ctgtgcgggc tcctggtggc ccttcaggag gctggcgcta ccgccggccc
      841 gcagctggcc atgctggtgg cagtcgcgct gatggccagc atcccgatgc gaccgtcccc
      901 ggtgagtcgg ctgcgcccgt tgggcgaggc ggcgctggcg gccgcggtca tcgggtccag
      961 cctggtcctt cccaccgcgc tgctgcccta cgtcgtggtc ccggcgctcg cggccgggct
     1021 cacgagcgga gtgatcggcg cggtctccgc gaccacgctg acgctgctgg tgctgaccgc
     1081 cgcccgctac gtggccggcg acctgttcaa ccggctcgag ctcacgctcg tggccgagtg
     1141 gatcgggctc gccctggcca ccggcctggt cggggcatgg gcgcgcgcgc tcgggcggcg
     1201 cgccggcctg gtgaccgaca cctatatcgc ggcgcaccgg ctgctcaccc ggttgcgaga
     1261 cgtggccagg cagctgccgg ccggtctgga cgaggtgacc ttggcccagc aggtcctcac
     1321 ctcgatggcc gacgagctcg acttcgagcg cggggggctc tacaccgtgt ccgaggccgg
     1381 cgtcctggcc ccgctcgcgt tcgccggcgc cgaccgagtg ggctgggccc cgacgctgga
     1441 cgagggcgtg tgggccaagg tctggcgaag cgggaacccg gcccagcaag gcggccagtt
     1501 caccgatcag acctcggggc attcggctgt tctcgcactt cgcctcgggg agcgacggat
     1561 cggcttgatc ggcatcgagc gggcggccgg ccagtggtcg caccgacagc tgtcccgcgc
     1621 ccagaacctt gccgacgatg cggcgctgcg gatcgacacc ggacagctgt tcagcgagat
     1681 ccgggcgctg gccactgtgg aggaacggcg ccggctggcc cgcgagatcc acgacggcat
     1741 cgcccaggag atcgcctccc tcggctacct ggtcgacgac ctgcgggccc gtacccagga
     1801 ctcgaccgtc cgcaccgagc tc
//
LOCUS       DASYFY010000707         1515 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1208613, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000707 DASYFY010000000
VERSION     DASYFY010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208613"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..164)
                     /locus_tag="VGN19_14335"
     CDS             complement(<1..164)
                     /locus_tag="VGN19_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010850097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEV7197110.1"
                     /translation="MTPPRRARLAAELLGTALLLAAVVGSGVMAQRLTADVGLQLLVN
                     AVATVAVLGVL"
     gene            complement(161..583)
                     /locus_tag="VGN19_14340"
     CDS             complement(161..583)
                     /locus_tag="VGN19_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015780515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsI/CadI family heavy metal resistance
                     metalloenzyme"
                     /protein_id="HEV7197111.1"
                     /translation="MSRIQLAINVADLEKSIEFYSVLFGVQPHKRRPGYANFAIAEPP
                     LKLVLIEVPADTRGEGAVQALNHLGIEVDSTSEVEAEAARLRDAGLVTLDERDTTCCY
                     ALQDKVWVHDPAGTPWEVYTVKDENPRIEHEHEAVACC"
     gene            702..1061
                     /locus_tag="VGN19_14345"
     CDS             702..1061
                     /locus_tag="VGN19_14345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019179984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEV7197112.1"
                     /translation="MSGTKLVATITTDSGEAACCGSLAIDDAMSRVQAETTAQLLKAV
                     ADPVRLRLLSLIRTSKDHEACVCDLTPAVGLSQPTVSHHLKVLTEAGLVTRERRGTWA
                     WFRLVPGRLDDLAAIFH"
     gene            1082..>1515
                     /locus_tag="VGN19_14350"
     CDS             1082..>1515
                     /locus_tag="VGN19_14350"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010147136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEV7197113.1"
                     /translation="MPPAALAELVHPTWAAALEPVTETVTALGAFLRDEVAAGRGYLP
                     AGGHVLRAFEQPLDAVRVLIVGQDPYPTPGHAVGLSFSVGPDVRPIPRSLANIYQELE
                     TDLGIPRPTTGDLSPSADQGVLLLNRVLTVAPGKPASHRGKG"
BASE COUNT          234 a          537 c          498 g          246 t
ORIGIN      
        1 agcaccccga ggacggccac cgtggcgacc gcgttcacca gtagctgcag gccgacgtca
       61 gcggtcaggc gctgggccat gaccccggag ccgacgacag cggcgaggag caaggcggtg
      121 ccgaggagct cggccgcgag cctggctcgg cgcggtggcg tcagcagcac gcgaccgcct
      181 cgtgctcgtg ctcgatgcgc gggttctcgt ccttcacggt gtaaacctcc cacggcgtgc
      241 cggccgggtc gtgcacccac accttgtcct gaagcgcgta gcagcacgtg gtgtctcgct
      301 cgtcgagggt caccagcccc gcgtcacgga gccgggcggc ctcggcctcc acctcgctgg
      361 tgctgtcgac ctcgatgccg aggtggttca gcgcctgcac cgccccctcc ccgcgggtgt
      421 cggccggcac ctcgatgagg accagtttga gtggcggctc ggcaatggcg aagttggcat
      481 accccgggcg ccgtttgtgc ggctgtacgc cgaacaacac ggagtagaac tcgatcgact
      541 tctcgaggtc ggcaacgttg atcgcgagct ggatccgaga catcggacgc ccctccattt
      601 catcgactac tgtctatgca ggaagtgaat cgatagcatc gacgtttgtc aatatcgaac
      661 ccgatcaatg cttcgagcat cgtgctctcc aaggaggctt tatgtctggg acgaagctgg
      721 tggcaaccat caccaccgac tccggcgagg ccgcgtgctg cggatctctg gccatagacg
      781 acgccatgag ccgggtgcag gcagagacca cagcccagct gctcaaggcc gtggccgacc
      841 cggtccggct gcggctgctg tcactcatcc gcacctccaa ggatcacgag gcctgcgttt
      901 gcgacctcac cccagccgtc ggactgtcgc agcccacggt cagtcaccac ctcaaggtgc
      961 tcaccgaagc gggcctggtc acccgcgaac gccggggaac gtgggcctgg ttccggcttg
     1021 tcccaggacg gctcgacgac ctcgcggcca tcttccactg aaggcgcgtt agttttccgg
     1081 tatgccgccc gccgccctcg ccgagctcgt ccacccgacc tgggctgccg ccctggagcc
     1141 ggtgaccgag accgtcacgg ctctgggcgc cttcctgcgc gacgaggtcg cggccggacg
     1201 ggggtacctg ccggcagggg ggcacgtcct gcgggccttc gaacagccgc tggacgcggt
     1261 ccgggtcctc atcgtgggtc aggatcccta tcccacgccg ggacatgcgg tcgggttgtc
     1321 cttctcggtc ggccccgacg tgcggcccat cccgcgcagc ctggcgaaca tctaccagga
     1381 gctggagacg gacctcggga tcccccggcc gaccaccggc gacctgtccc cctcggcgga
     1441 ccagggtgtg ctcctgctca accgggtcct gaccgtggcg ccgggaaagc cggccagcca
     1501 tcgcggcaag ggctg
//
LOCUS       DASYFY010000708         2425 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1681538, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000708 DASYFY010000000
VERSION     DASYFY010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1681538"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VGN19_14355"
     CDS             <1..773
                     /locus_tag="VGN19_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEV7197114.1"
                     /translation="KVENVGLGGGHVVVDFKVTSPTAFGDQTGASIRMKTLLGAKYLS
                     LEPGGSGQLKTDSVIPLDRTVSSYDIVNAFSDLTTTTEDINTGLLAQSLTTLATEFKN
                     SPPAVAAALSGLTRLSTTIASRDAALKHLLASANSVSGTVAERNKAVESIIKNADLLM
                     VELNARRDAIHTLFTNTSAMAIQITGLVRDNRAQLKPALDQLTKVLAVLQKHQQDLSD
                     TITAMGPFTRLFANVLGNGRWFDTYIANLTTPAQLGGR"
     gene            773..2041
                     /locus_tag="VGN19_14360"
     CDS             773..2041
                     /locus_tag="VGN19_14360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEV7197115.1"
                     /translation="MVRLPVLPRLPRMGLLAKVIAALAVVALVAGAYAFWPRSQSIKV
                     TGEFSRAVGLFPGSDVRILGVKVGKVDDVIPEGDRVLVTFEYDSQFHVPANAKAAVVA
                     PSLVSDRYVQLLPAYTSGPVMRSGDHIGLDRTAVPVELDRISSSLDALLVALGPTGAN
                     KNGAFQDLLHTGAKNLAGQGQNLHDTNHNLSLAIQTLSGGRNDLFGTVKNLQVFTTML
                     ATNDTQVRRLNTDLANVSVQLDSERGDLAAALKNLAVALSEVSSFVHDNRAGLTKNLQ
                     QLASVTGTVAAQRNALAEALTTAPVALSNLQNAYNPATGTLDTRANINENLKIQNMLC
                     NLIVASGQPSSACTTVTGALKPVTDLLGRLQGSGVQLPTNLLSAVPGSQSDSLSGSAS
                     GSAPTTQTGQTTVLMHGADPTLGGLLTVSQ"
     gene            2038..>2425
                     /locus_tag="VGN19_14365"
     CDS             2038..>2425
                     /locus_tag="VGN19_14365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEV7197116.1"
                     /translation="MNATTSRMPRARRLVAALAAVAGLLMASGCQGAFDLPLPGGAAQ
                     GGDIIRVTAEFADVLDLVPQSAVKVNQVTVGSVEKIELNGWTARVTMRLPRSVHVPDN
                     AIADIKQTSLLGEKYIELSPPPASAPQ"
BASE COUNT          408 a          914 c          739 g          364 t
ORIGIN      
        1 gcaaggtcga gaacgtcggc ctgggcggcg gccacgtcgt ggtcgacttc aaggtcactt
       61 cccccactgc cttcggtgac cagacgggtg cctccatcag gatgaagacc ctgttgggcg
      121 cgaagtacct gtccctcgag cccggcggta gcggacagct caagaccgac tccgtgatcc
      181 cgctggaccg gacggtctcc tcctacgaca tcgtcaacgc cttcagtgac ctgacgacga
      241 cgaccgagga catcaacacc ggtctgctcg cgcagtcgct gaccacgttg gccacggagt
      301 tcaagaacag tcctcccgcg gtggccgcag cgctcagcgg cctgacgcgt ctgtccacaa
      361 ccatcgcctc gcgggacgcc gccctcaagc acctgctggc ttcggctaac agcgtctccg
      421 gcaccgtggc cgagcgcaac aaggcggtcg agtcgatcat caagaacgcc gacctgctca
      481 tggtggagct gaacgcacgc cgcgacgcga tccacacgct cttcacgaac acctcggcga
      541 tggcgatcca gatcaccggg ctggtccggg acaatcgcgc tcagctcaag ccggccctcg
      601 accagctcac caaggtcctc gccgtcctac agaagcacca gcaggacctc agcgacacga
      661 tcaccgcgat gggcccgttc acgcggctgt tcgccaatgt gctgggcaac ggccgctggt
      721 tcgacaccta catcgcgaac ctcaccacgc ccgcccagct cggaggacga tgatggtcag
      781 gctccctgtg cttccccggc tgccgcgaat ggggctgctg gccaaggtca tcgccgccct
      841 ggccgtggtc gcgctggtcg ccggcgccta cgccttctgg ccgcggtcgc agtcgatcaa
      901 ggtcaccggt gagttctcgc gagcggtggg cctcttcccg ggctcggatg tccgcatcct
      961 cggggtcaag gtcggcaagg tcgatgacgt catccccgag ggtgaccggg tgctggtgac
     1021 cttcgagtac gactcccagt tccacgtgcc cgccaacgcc aaggccgccg tcgtggctcc
     1081 ctccttggtg agcgaccgct acgtccagct cctcccggca tacacctccg ggccggtgat
     1141 gcgctccggc gaccacatcg gtctcgaccg cacggccgtc cccgtggagc tggaccgcat
     1201 ctcctccagc ctcgacgcgc tgctcgtggc gctcggcccg accggggcca acaagaacgg
     1261 cgccttccag gacctgctgc acaccggggc caagaacctg gccggccagg gtcagaacct
     1321 gcacgacacc aaccacaacc tctcgttggc gatacagacc ctctccgggg gacgcaacga
     1381 cctgttcggc acggtgaaga acctgcaggt cttcacgacc atgttggcga ccaacgacac
     1441 ccaggtccgt cggctcaaca ccgacctggc caacgtctcg gtccagctcg actccgagcg
     1501 gggggacctc gccgccgcgc tgaagaacct cgcggtcgcc ctgagcgagg tgtcgtcctt
     1561 cgtgcacgac aaccgcgccg gcctcaccaa gaacctgcag cagctcgcca gcgtcaccgg
     1621 cacggtggcc gcccagcgca atgccctcgc ggaggcgttg accaccgccc ccgtggcctt
     1681 gagcaacctg cagaacgcct acaaccccgc gaccgggacg ctggacaccc gcgccaacat
     1741 caacgagaac ctcaagatcc agaacatgct ctgcaacctc atcgtggcca gtggccagcc
     1801 ctcatctgcc tgcaccacgg tcaccggcgc gctcaagccc gtcaccgacc tcctcggccg
     1861 cctccagggc tcaggggtgc agctgccgac caacctgctc tcggccgtcc ccggttcgca
     1921 gtccgactcg ctgtccggct cggcgtccgg ttcggccccg acaacccaga ccgggcagac
     1981 gaccgtgctg atgcacggcg ccgacccgac cctgggtgga ttgctgacgg tgtcccagtg
     2041 aacgccacca cctcgcgtat gccgcgggcc cgccgcctgg tcgctgcgct ggccgcggtc
     2101 gccggcctgc tgatggccag cggttgccag ggcgcgttcg acctgccgct gcccggcggt
     2161 gccgcgcagg gcggcgacat catccgggtc accgcggagt tcgcggacgt gctcgacctt
     2221 gtgccgcagt cggcggtcaa ggtcaaccag gtcaccgtcg gctcggtcga gaagatcgag
     2281 ctgaacggct ggacggcgcg ggtcaccatg cggctgccgc gaagcgtcca cgtgccggac
     2341 aacgccatcg ccgacatcaa gcagacctcg ctgctgggcg agaagtacat cgagctctcc
     2401 ccgccgccgg ccagcgcccc gcagg
//
LOCUS       DASYFY010000709         1604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1628829, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000709 DASYFY010000000
VERSION     DASYFY010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1628829"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VGN19_14370"
     CDS             complement(<1..367)
                     /locus_tag="VGN19_14370"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEV7197117.1"
                     /translation="MTGLEGRVALITGGARGQGRSHAVALARRGVAVALVDRCADVAT
                     IAYPMAGPDDLAATQALVEAKGVRCTAHQADVRDLDALHAIVADVTAELGSVDIAIAN
                     AGVSGMGLIYEQSAEAWSDI"
     gene            complement(460..540)
                     /locus_tag="VGN19_14375"
     tRNA            complement(460..540)
                     /locus_tag="VGN19_14375"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(504..506),aa:Tyr,seq:gta)
     gene            625..1113
                     /locus_tag="VGN19_14380"
     CDS             625..1113
                     /locus_tag="VGN19_14380"
                     /inference="COORDINATES: protein motif:HMM:NF003819.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEV7197118.1"
                     /translation="MPSFDVVSEVDLQEVRNAVDQVSREVTTRYDFKNTNSSIELNDH
                     EIKLHANTEDRLAALRVVLEEKLVRRKVSLKAVDYGKVEEASGGTARQVVTLNAGISS
                     DKARELNRFIKDLGLKGVQSQAQGDQLRVTGKKRDDLQAAITALREGDFGVPLQFENF
                     RD"
     gene            complement(1215..>1604)
                     /locus_tag="VGN19_14385"
     CDS             complement(1215..>1604)
                     /locus_tag="VGN19_14385"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEV7197119.1"
                     /translation="MAMWGGMFFGGGGRNRNDNFLGLIAMMILAPLAAGLLKMALSRS
                     REYEADRSGAQLIGDGEPLARALLKIDHYSKQVPMKVDPSMATAYIINPLAGKPGKQS
                     SSFSNLFRTHPPTDDRIARLRGGEWQD"
BASE COUNT          247 a          552 c          564 g          241 t
ORIGIN      
        1 cgatgtcgga ccaggcctcc gccgactgct cgtagatcag ccccatcccc gacacgcccg
       61 cgttggcgat ggcgatgtcg accgagccca gctcggcggt gacgtccgcc acgatcgcgt
      121 gcagcgcgtc gaggtcgcga acgtcggcct ggtgggcggt gcagcgcacc cctttggcct
      181 cgacgagcgc ctgggtggcg gccaagtcgt cggggccggc catggggtag gcgatggtgg
      241 cgacgtcggc gcaccggtcg accagcgcga ccgccacgcc ccgccgcgcg agcgcgaccg
      301 cgtggctgcg tccctgcccg cgggcgcctc cggtgatcag cgcgacccgc ccctcgagtc
      361 cggtcatgac atccccttca ggtcgcctgc ccggagccca cggctcgatc ccttggcgct
      421 cccgggcccg ccggcgagcg ggcccggggg tgccgggtgt ggtccgggaa ggatttgaac
      481 cttcgtagct ttcgcgactg gtttacagcc agttcccttt ggccgctcgg gcaccgaacc
      541 aggaacggga cagtgtagcc aaggcccgcg cggcgccgaa ctcgtcaact gaccccaccc
      601 cacggccgcg ggtacgttgt cggcatgccg agcttcgatg tggtttccga ggtcgacctc
      661 caggaggtcc gcaacgctgt cgaccaggtc agccgtgagg tgacgacccg ctacgacttc
      721 aagaacacca actcgtcgat cgagctcaac gaccacgaga tcaagctcca cgccaacacc
      781 gaggaccgcc tcgcggcgct gcgggtggtg ctcgaggaga agctggtccg tcgcaaggtg
      841 tcgttgaagg cggtcgacta cggcaaggtc gaggaggcgt ccgggggcac cgcccgccag
      901 gtcgtcacgc tcaacgcggg catctcgtcg gacaaggccc gtgagctcaa ccgcttcatc
      961 aaggacctgg ggctcaaggg cgtgcagtca caggcgcagg gcgaccagct ccgcgtcacc
     1021 ggcaagaagc gcgacgacct gcaggccgcc atcaccgcgc tgcgcgaggg cgacttcggc
     1081 gtgccgctgc agttcgagaa cttccgcgac tgacgggacc gcgcacgcga gaggagccgg
     1141 tggcggacca ccggctcctc tgccactggg gagtcaccac cccggcgaat ctgcgtgccg
     1201 gccctggaag ggtcctagtc ctgccactca ccgccgcgca agcgggcgat gcggtcgtcg
     1261 gtgggcgggt gcgtgcggaa gaggttgctg aagctgctcg actgcttgcc cggcttcccg
     1321 gccagcgggt tgatgatgta ggcggtggcc atggaagggt cgaccttcat ggggacctgc
     1381 ttcgagtagt ggtcgatctt gagcagtgcc cgggccagcg gttcgccgtc gccgatgagc
     1441 tgcgcaccgc tgcggtcggc ctcgtactcg cggctgcgcg acagggccat cttgaggagg
     1501 cccgcggcga gcggcgccag gatcatcatc gcgatgagcc cgaggaagtt gtcgttgcgg
     1561 ttgcggccgc cgccaccgaa gaacatgccg ccccacatgg ccat
//
LOCUS       DASYFY010000710         4789 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_366099, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000710 DASYFY010000000
VERSION     DASYFY010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366099"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1081)
                     /locus_tag="VGN19_14390"
     CDS             complement(<1..1081)
                     /locus_tag="VGN19_14390"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEV7197120.1"
                     /translation="MAGQTDPVRDVVVVGGGAAGLSAALTLARARRSVTVVDAGEPRN
                     APAAGVHGLLALEGVSPVELLARGRDDVRGYGGEILADEVVDVSFASYGFSVVLRGGA
                     VLRARRLLIATGLVDELPDIPGVREQWGRGVLHCPYCHGWEVRDRRIGVLGTDPMAVQ
                     KAMLFRQWSPDVVFFDDAKPLDASDRAKLDALGVAVVAGKISRLEVIEDQVTGVRIED
                     GTVVAVDAVVISTRMVARTELFAGIGIEPTAHRAGAFIETDQFGATSVPGVWAAGNSS
                     DIGAQVGAAAAAGALAAQHINTDLIFEDLDSAVTAAAAGTSSQEDSAVEHTFDNEYWD
                     QIWTGDRAKAMGSSQPNPHLVRETAD"
     gene            1194..1796
                     /locus_tag="VGN19_14395"
     CDS             1194..1796
                     /locus_tag="VGN19_14395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018773051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEV7197121.1"
                     /translation="MNRPVDRTLDAVGPRLKQLRQRRDITLNDLAEETGVSTSTLSRL
                     EAGLRRPTLEQLLPLARAYGVTLDELVDAPPTGDPRINLRPIPTRDGRTILPLSRRPG
                     GIQAYKFILPTGRDDAEPDLRTHEGYDWAFVLNGKLRLVLGEHDLTLEPGDAAEFDTR
                     TPHWFGATSSGPVEFLSLVGKQGERAHVRTGRTQRNDHHL"
     gene            1875..2312
                     /locus_tag="VGN19_14400"
     CDS             1875..2312
                     /locus_tag="VGN19_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015938526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEV7197122.1"
                     /translation="MPIKLENVGIAVRDLEAAIAFFTDLGLAVLGRDTVSGEWTDTAV
                     GLDGNHAMIAMLQTPDGNGRLELFEYLHPDAIETEPTRPNEIGMHRVAFSVDDIDEAL
                     EVAARHGCHPLRGVATYGEVYKLTYVRGPSGILVMLAEELKKS"
     gene            2695..3117
                     /locus_tag="VGN19_14405"
     CDS             2695..3117
                     /locus_tag="VGN19_14405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197123.1"
                     /translation="MGIKSISVSGRFDQAAVARRSALSKVAPYELELADGSNSRLVSA
                     ALLLLPTNAVPDQIIDKSGQIAPQVIANAVAFAQAKQVAPGRWSVRLDVPTSLGPGKY
                     TVVFVQVGAWTRSGPGTGAVGAREFEDIPNFATLTVKP"
     gene            complement(3339..4130)
                     /locus_tag="VGN19_14410"
     CDS             complement(3339..4130)
                     /locus_tag="VGN19_14410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009776613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen family hydrolase"
                     /protein_id="HEV7197124.1"
                     /translation="MEQGVRVALVQLDVSDAEAPAARVDRVARLVRDQKGVADLVILP
                     ELWHVGAFALGLARSHAEPLDGPLVAQMRSAAADSGVWLHAGSFAELDPVSGNRYNTS
                     LLLAPHGGVAATYRKQHLFGWEGGESSVMSAGTGLSVAQTPLGPTGLVTCYDLRFPEL
                     FRALVTKGAATFLLTSGWPAERIEHWSVLARARAIENQAWVVACNTAGTHNGVVMGGR
                     SLVVDPMGAVIAEAGEDEQVLYADIDPDVATTWRESFPVLADRRL"
     gene            4360..>4789
                     /locus_tag="VGN19_14415"
     CDS             4360..>4789
                     /locus_tag="VGN19_14415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197125.1"
                     /translation="MRKRTLAAVLSTGLVAGLVVGIPMTVANAAGSKVTTTTVQIRQS
                     DFLPPPLEDTRTSGHLQFIKDGLHLWTDDATSQAKVAEYWSVSGSLADMVGSTMPVWW
                     GTSPGPGSQIVFDTGIPGANRYNILVGEAVYKGDWWLTNGS"
BASE COUNT          828 a         1755 c         1493 g          713 t
ORIGIN      
        1 ggtcggcggt ctcgcggacg aggtgtgggt tcggctggct tgatcccatg gctttcgcgc
       61 gatcgcccgt ccagatctgg tcccagtact cgttgtcgaa tgtgtgttcc actgcagagt
      121 cttcttgact gctcgttccg gcggccgctg cggtcacagc gctgtcgagg tcctcaaata
      181 tgagatcggt gttgatgtgc tgggccgcca acgctccagc ggcagcggcg gctccgactt
      241 gggcgccgat atcggaggag ttgcctgcgg cccacacccc aggcaccgag gtggcgccga
      301 actggtcggt ctcgatgaac gcgccggcgc gatgggcggt cggctcgatg ccgattccgg
      361 cgaagagctc ggtgcgggcg accatccgcg tcgagatcac cacggcgtcg actgcaacga
      421 ctgtcccgtc ctcgattcgg acaccagtca cttggtcttc gatgacctct aaccgtgaga
      481 tcttgcccgc gacgactgcg acgccgagtg cgtcgagctt ggcgcggtcc gacgcgtcca
      541 gcggcttggc gtcgtcgaag aagacgacat cgggactcca ctggcgaaac agcatggcct
      601 tttgtaccgc catcgggtcg gtgcccagca cgccgatcct gcggtcgcga acttcccatc
      661 cgtggcagta gggacagtgc aggacgccgc ggccccactg ctcccgcacg ccaggaatgt
      721 ccggcagctc gtcgaccagt ccggtggcaa tcagcagacg ccgcgcgcgc aggacagcgc
      781 caccgcgaag cacgaccgag aacccgtacg acgcaaagga aacatcgacc acctcgtccg
      841 ccaagatctc accgccgtag ccgcgtacgt cgtcgcgacc gcgagccagc aactcgaccg
      901 ggctcacacc ctccagggca agcaacccat gcactccggc agcgggagcg ttcctcggct
      961 cacccgcgtc cacgaccgtc accgatcggc gtgcccgcgc cagcgtcaac gcggcgctca
     1021 agccggctgc gccgccaccc acgaccacca cgtcgcgaac tgggtccgtt tgccctgcca
     1081 tgcgttgtcc tctcgatacc cgccgccgct gccggtgcgg cagcagcatt tcccgagggt
     1141 gactcctaac cagcaaactt gcaaacgttg ttgctgaatg gcaaactcca ggcgtgaaca
     1201 gaccagtgga ccgcaccctc gacgccgttg ggccacggct gaagcaactg cgacagcgcc
     1261 gcgacatcac cttgaacgac cttgccgagg agaccggggt ctcgaccagc acactgtcca
     1321 ggctcgaggc cggactgcgg cgccccacgc tggaacaact actaccgctg gcacgcgcct
     1381 acggcgtcac cctcgatgag ctcgtcgacg caccaccgac cggcgacccg cgcatcaacc
     1441 tgcgcccgat acccaccagg gacggccgga ccatcctgcc cctcagccgt aggcccggag
     1501 gcatccaagc ctacaagttc atcctcccca ccggacgcga cgacgccgag cccgacctac
     1561 gcacccacga aggctatgac tgggccttcg tcctcaacgg caaactccga ctcgtcctcg
     1621 gcgagcacga cctgaccctc gaacccggcg acgccgcaga gttcgacacc cgcaccccac
     1681 actggttcgg cgccaccagc tcaggacccg tcgagttcct cagcctcgtc ggcaaacagg
     1741 gagaacgcgc gcacgtgcgc actggacgca cgcagcgcaa cgatcaccat ctctgattcc
     1801 ggccagaccc atcggtgaag gtcgctacac cagctgacct gagcgactcg cgctgactcg
     1861 atagcgtgca acgcatgccc atcaaactcg agaacgtcgg gatcgccgtg cgcgacctcg
     1921 aagctgcgat cgccttcttc accgacctcg ggctcgccgt tctcggccgt gacacggtca
     1981 gtggagagtg gaccgacacg gccgtcggcc tcgacggcaa ccacgccatg atcgccatgc
     2041 tccagacgcc agacggcaac ggtcgcctcg agctcttcga gtacctccac cccgacgcga
     2101 tcgagacgga gcccacccgt ccaaacgaga tcggcatgca ccgcgtggcc ttctcggtcg
     2161 acgacatcga cgaggccctc gaggtcgccg cgaggcacgg ctgccacccg ctgcgcggtg
     2221 tggcgaccta tggggaggtg tacaagctca cctatgtccg cggccccagc ggcatcctcg
     2281 tcatgcttgc cgaggagctg aagaagagct gaccccgggg tcgatcctca tccggcggca
     2341 atccgccgac cacctagctg acagcctggc ctggctacga actgagcgaa atgaacaggt
     2401 aggcactaga acgaggtgct catcgagcgc ctgcgcaccg tagcggacga cgtaccggtc
     2461 ccgccgatcc catggaacgc agtggcggcc ctcagccgcc ggcggcgcca acgccgggcc
     2521 gccgccgtga cttcgtctgc actcgccgcg gcggcgttgg ttctgcttgc ttcgtggcca
     2581 gccctgcacc agaacacgac gccgcccgcg gccgccatcc atcccagggc cgtcccagcg
     2641 accacgccgg caggcggtgg cacgaccgac ccgggtgcgg cgccgaggct tccgatgggc
     2701 atcaagtcga tctcggtctc tggcaggttc gaccaggcgg ccgtggcccg ccgcagcgcc
     2761 ctgtcgaagg tggcgcccta cgagctggag ctcgctgacg gcagcaacag ccgcctggtt
     2821 tccgccgcgc tccttctcct gcccaccaac gccgtcccgg accagatcat cgacaaaagc
     2881 ggtcagatag ctccacaggt gatcgcgaac gccgtggcgt tcgcgcaggc caagcaagtc
     2941 gcccccggcc ggtggtccgt tcgccttgac gtccccacca gcctcgggcc gggcaagtac
     3001 acggtggttt tcgtgcaggt cggtgcctgg acgaggagtg gcccaggcac cggcgcggtc
     3061 ggagcccgcg agttcgagga cattcccaac ttcgcgacgc tgaccgtcaa gccgtagtcc
     3121 cactcgacct tgcggcccac ccaaactcgg cacaaggtcc ggtgcgctca cccgaacaga
     3181 acagcccgat attgctcggc ttcggaacac gacccccggg atcgggcagc ggagcacggc
     3241 cgcgcctcga ccgacggccc ccaagggacc ctcgtccaac tcgccgcggt gtcccgtctg
     3301 tgcggtcagc tcagtccggg tccggcgcgc cgctgggctc agaggcggcg gtcggccagt
     3361 acggggaacg actcccgcca cgtggtcgcg acgtcggggt cgatgtccgc gtacagcacc
     3421 tgctcgtcct cgcccgcctc cgcgatgacg gcgcccatcg ggtccaccac caacgagcgg
     3481 ccgcccatca cgacgccgtt gtgggtgccc gcggtgttgc aggccacgac ccatgcctgg
     3541 ttctcgatgg ccctggcgcg cgcgagcacc gaccagtgct cgatccgctc cgccggccag
     3601 cccgaggtca gcaggaatgt cgcggcaccc ttcgtcacga gcgcccggaa cagctcgggg
     3661 aatcgcaggt cgtagcacgt gacgagcccg gtcgggccga gcggggtctg cgccaccgag
     3721 agtccggtgc ccgcgctcat cacggaggac tccccgccct cccagccgaa gaggtgctgc
     3781 ttgcggtacg tcgccgccac gccgccgtgc ggcgcgagca gcagcgaggt gttgtagcgg
     3841 ttgcctgaga ccgggtcgag ctcggcgaac gatccggcgt gcagccacac accggagtcc
     3901 gcggccgcag agcgcatctg ggccaccagc gggccgtcca gcggctccgc gtgcgaccgg
     3961 gccaggccga gcgcgaacgc tccgacgtgc cagagctcgg gaaggatgac cagatcagcg
     4021 acacccttct ggtcccgtac cagcctcgcc acccggtcga cccgcgccgc cggcgcctcg
     4081 gcgtcggaca cgtccagctg caccagcgca actcgcacac cctgctccat gcccccatcc
     4141 tcctccggag gactcacgtc gcggggcgag gggacgctgc gtaacgcagg tcacacgtgt
     4201 cgtaacgcgg ctggtctgtc cgggtctgtc actctcacgt cagcctgccc gcaccacgcc
     4261 ttgatccgtc gagggtgatg cgagcggtac gtccgcgccg agcccgtgac ctctgcgcgc
     4321 cgccgtactc gattcacggg gaacgtcaga aggagaatca tgcgtaaacg cacgctagcg
     4381 gcggtgctgt ccaccggcct ggtagcaggt cttgtggtcg gcatcccgat gaccgtggcc
     4441 aacgccgcgg ggtccaaggt caccaccaca accgtccaga tccgccagtc cgactttctc
     4501 ccacccccgt tggaggacac ccgaacttcc ggacacttgc agttcatcaa ggacgggttg
     4561 cacctctgga ccgacgacgc caccagccaa gcaaaggtcg cggagtactg gtcggtgtcg
     4621 ggcagtctgg ccgacatggt gggctcgacc atgccggtct ggtggggcac aagcccagga
     4681 ccggggtccc agatcgtgtt cgacacgggc atccctggtg ccaacaggta caacatcctc
     4741 gtcggcgaag cggtctacaa gggggactgg tggctgacga atggctcct
//
LOCUS       DASYFY010000711         3198 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_1839256, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000711 DASYFY010000000
VERSION     DASYFY010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 3198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3198
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1839256"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            416..1051
                     /locus_tag="VGN19_14420"
     CDS             416..1051
                     /locus_tag="VGN19_14420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019179125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197126.1"
                     /translation="MKHSAPRRARTSRGYAALAVATVASAILVLEGSPVAWAAPADSA
                     GVAISTAQRAAAAGAMALPVTTAALALPARQSAASAAAKALAVKPKAKPVVVKKKKAA
                     VAPYRFGTKKFNLWYAQTYMLAKYHWAFPQFACLARMWGKESAWNQNAWNHASGARGI
                     PQAQPGNKMSKFGKDWRTNPTVQIRWGLAYIRGTYGSPCSAWAFWQRHHWY"
     gene            1210..1905
                     /locus_tag="VGN19_14425"
     CDS             1210..1905
                     /locus_tag="VGN19_14425"
                     /inference="COORDINATES: protein motif:HMM:NF021443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1707 domain-containing protein"
                     /protein_id="HEV7197127.1"
                     /translation="MTQNGEPVREPDPVQAALRMRASDADRERVADLLRDAYAEGRLS
                     PIEHEERLSAAYQAATYGDLVPVLHDLPVPPGTLAVPESRGVDLVRTSSGASGATTSG
                     LVVRPERAGEGEATAVAVFGGFERSGAWIVRPELTAVAIFGGGEMDFTEAVLTSHETV
                     LTITAIFGGVDITVPDGMAVRNEGFAMFGGHSVPREATPAGAPVLVIRGAAIFGGVDV
                     HRPKGRKNKSSAD"
     gene            complement(1912..2922)
                     /gene="glpX"
                     /locus_tag="VGN19_14430"
     CDS             complement(1912..2922)
                     /gene="glpX"
                     /locus_tag="VGN19_14430"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HEV7197128.1"
                     /translation="MSDASTHHTPEAPDRNLALELVRVTEAAAMAGARWVGRGDKNGA
                     DGAAVNAMRTLVTSVAMAGTVVIGEGEKDNAPMLFNGEQIGDGTGPECDVAVDPIDGT
                     TLTAKGMPNALSVLAVSQRGTMYDPSAVFYMEKLVTGSAAADFVDINAPVIDNLRAVA
                     KAKGERVEDLTVVILDRPRHEQVVREIREAGARITFILDGDVAGAIMAAREGTGVDLL
                     LGIGGTPEGVITACAIKCLGGVIQGRLWPKDEAERIRALDAGHDLGRVLFTDDLVTGD
                     NVFFVATGVTDGELLEGVRFGKGRATTHSIVMRSKSGTIREVKSEHRLSKLGRYAAVD
                     FG"
BASE COUNT          470 a         1110 c         1109 g          509 t
ORIGIN      
        1 gctgactgtc ggaattgtcc gtcttcgtcc cggcaccacg cccctggacc gagttcaggg
       61 gctccgcatc cgaccgttcg actcgacgga tcgaccgacc atttgccagg ctgtccctgt
      121 tcttagaccc cgcggacggg gtccggcctg ctaggcgccg tcgatcacca gtgacttccg
      181 tcatcagtga tccggacgtg ccctggcccg ggtgtcacaa cagtggacga cacccggtca
      241 ccgagctcgg tccgccgccc cggatgccac ctggcatcgc gacacggggc cagcccgccc
      301 cgagcgtggc gcctgttcgt caggtgctcc ggcagaaggc actcgggacg gccgtgacaa
      361 gggaccgcct gcgtggcacc accggagggt gctcgccccg agcactggac gatcaatgaa
      421 gcattccgcg cctcgccgcg cccggacctc cagaggctat gcagccctgg cagtcgcgac
      481 ggtcgccagc gccatcctcg tgctcgaggg cagcccggtg gcctgggccg cccctgccga
      541 ctccgccggc gtcgcgatct cgacggcgca gcgtgctgcg gctgcgggcg ccatggcgct
      601 gcccgtcacg actgcggcac tcgcccttcc ggcccggcag tccgcagcgt ctgccgccgc
      661 caaggctctc gctgtgaagc ccaaggccaa gccggtggtc gtcaagaaga agaaggcggc
      721 cgtcgcccca tatcgctttg gtaccaagaa gttcaacctg tggtacgccc agacctacat
      781 gctggcgaag taccactggg ccttcccgca gttcgcttgc ctggctcgca tgtggggcaa
      841 ggaaagtgcg tggaaccaga acgcctggaa ccacgccagc ggtgcccgcg gcatccctca
      901 ggcacagccc ggcaacaaga tgtcgaagtt cggcaaggac tggcgtacca acccaacggt
      961 ccagatccga tgggggctgg cctatatcag gggcacgtat ggaagccctt gcagcgcatg
     1021 ggctttctgg cagcgccacc actggtactg agctgtcgct gacgaacaag cacccgctga
     1081 cccgtcgcct ccaagggcgc gatcagcggg tgctgtcgtt ttcgagcgcg ccgggcgccg
     1141 ccgcccgcgc cgggagccgc gcccggtgcg gttctgcgga ccgccgacga cgatcggtag
     1201 cgtgggcaca tgactcagaa cggcgagccc gtgcgcgagc ccgatccggt ccaggccgcg
     1261 ctgcgaatgc gagcctcgga cgcggaccgt gagcgcgtcg cggacctgct gcgtgacgcc
     1321 tacgccgagg gcaggctgtc gccgatcgag cacgaggagc ggctctcggc tgcataccag
     1381 gcggcgacgt acggcgatct cgtcccggtc ctgcatgacc tcccggtccc gccggggacg
     1441 ctggcggttc ccgagagccg cggcgtggac ctggtacgta cctcgtcggg tgcttccggt
     1501 gccacgacgt cgggcctcgt cgtgcgcccg gagcgcgcgg gtgagggtga ggccacggcg
     1561 gtcgcggtgt tcggcgggtt cgagcgatcc ggcgcttgga tcgtgcggcc cgagctcaca
     1621 gcggtcgcga tcttcggtgg tggtgagatg gacttcaccg aggccgtgct caccagccat
     1681 gagaccgtgc tgaccatcac cgcgatcttc ggtggcgtgg acatcaccgt gccggacggg
     1741 atggccgtgc gcaacgaggg attcgccatg ttcggcggcc actcggtccc cagggaggcg
     1801 acgcctgccg gagcaccggt cctggtgatc aggggagcgg cgatcttcgg aggcgtcgac
     1861 gtacatcggc ccaagggccg caagaacaag agctcggcgg actgaagtga ctcagccgaa
     1921 atcgactgcg gcgtaacgac ccagcttgga gagccgatgc tcgctcttga cctcgcggat
     1981 cgtcccgctc ttgctgcgca tgacgatcga gtgcgtcgtc gcccggcctt tgccgaagcg
     2041 cactccttcg agcagctcgc cgtcggtgac cccggtcgca acgaagaaga cgttgtcgcc
     2101 ggtcacgagg tcgtcggtga agaggacccg acccaggtcg tggccggcat cgagcgcgcg
     2161 gatccgctcg gcttcgtcct tgggccagag ccggccttgg atcacaccgc ccaggcactt
     2221 gatcgcgcag gctgttatga ccccttccgg ggtcccgccg atgccgagca gcaggtcgac
     2281 cccggtgccc tcgcgcgccg ccatgatggc gcccgccacg tcaccgtcga ggatgaacgt
     2341 gatacgagcg cccgcctcgc ggatctcacg aaccacctgc tcgtggcggg gccgatccaa
     2401 gatgacgacc gtgaggtcct cgacgcgctc acccttggcc ttcgcgactg cccgcaggtt
     2461 gtcgatgacc ggggcgttga tgtcgacgaa gtcggcggcc gctgagccgg tcaccagctt
     2521 ctccatgtag aaaaccgcgg acgggtcgta catggtccct cgctgggaga ccgccagtac
     2581 cgacagcgcg ttgggcattc cctttgccgt gagggtggtg ccgtcgatcg gatccaccgc
     2641 gacgtcgcac tccgggccgg tgccgtcccc gatctgctcc ccgttgaaca gcatgggcgc
     2701 gttgtccttc tcgccctcgc cgatgaccac ggtgccggcc atcgcgaccg aggtcaccag
     2761 ggtgcgcatc gcgttgaccg cggcaccgtc cgcgccgttc ttgtcgccac gacccaccca
     2821 gcgagcgccg gccatcgcgg cagcctcggt gacccggacc agctccaggg ccaggttccg
     2881 gtcgggggct tccggcgtgt gatgagtgct ggcgtcggac acggggcctc cgtcgggatg
     2941 ctgtggtgcg ctcggtgcca gcagcgtaga gcaggggtgc cggtcgccag gatccgttcg
     3001 tgcagccgcc ctcgtgtggg gtgcgttcgc gggcggggga ggatggggcg atggaccagg
     3061 gtgcttcgac ggccgtgccc tcgccgtcgc catcggacgt ggtgcccgcg ccagtgctcc
     3121 cggacgcgat ggtggcgccg gtgccggagc tcaccccggc cgagcggtcg gcgcgtcgga
     3181 tgcgccaagg ggtccggg
//
LOCUS       DASYFY010000712         1805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_577656, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000712 DASYFY010000000
VERSION     DASYFY010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577656"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VGN19_14435"
     CDS             complement(<1..570)
                     /locus_tag="VGN19_14435"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEV7197129.1"
                     /translation="MTLDPRRGHQSGLSRVTLLDQVAGLVPAGWADDCVLIGVDGVDG
                     SGKTTFADELAAALYAAGRCTLRISVDDFHHVRDRRYRLGRESPEGFWLDSFDYERLH
                     MDVLQPLGPGGSRRFRSKAHDLETDQVVWPERMAAPAGTVVVIDGLFLHRAELRDAWA
                     FTIYLDVPFQVTARRMAERDGSSPDPQHPS"
     gene            complement(588..809)
                     /locus_tag="VGN19_14440"
     CDS             complement(588..809)
                     /locus_tag="VGN19_14440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197130.1"
                     /translation="MRPRSQASKPHLPNSPFRPQPIPDVHPFEVNDRLTHDRHGMGSV
                     VRIIGDRLEVKFGQTVVSIARNSTKIHPL"
     gene            907..>1805
                     /locus_tag="VGN19_14445"
     CDS             907..>1805
                     /locus_tag="VGN19_14445"
                     /EC_number="2.7.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013492825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEV7197131.1"
                     /translation="MHVVIAPDCFTGTLTAQQAAEAMATGWRQAAPHDLLTLLPLSDG
                     GPGFVEVLSAAFPQAQTLAVIVTDPLGREVPAAIAMVDSDGGRTAYVESAQAAGLHLL
                     DAGERNPTLTSTWGVGQLIRAALEEGATRIVVGLGGSATNDAGAGLLAALGVGAPRDL
                     ARGGLALADLPDAALDGLQNAREKFAGVRLVLATDVDSPLLGLQGASAVFSAQKGATP
                     QQAQALEGALGRFVEVVRRTLPETADLLTGKPRRIDKEPGAGAAGGLGYALYLLGGTR
                     VSGVEEVLRAVGFRELAAAADLVV"
BASE COUNT          244 a          614 c          668 g          279 t
ORIGIN      
        1 gctcgggtgc tgggggtcgg ggctcgaccc gtctcgctcc gccatcctgc gggcggtcac
       61 ctggaagggc acgtcgagat agatcgtgaa cgcccatgcg tcgcgcagct cggcccgatg
      121 gaggaacagc ccgtcgatca cgaccacggt gccagcgggt gcggccatcc gttcgggcca
      181 caccacctgg tcggtctcca ggtcatgggc cttcgaacga aaccgcctcg agccgccggg
      241 ccccagcggc tgcagcacgt ccatgtgcag ccgctcgtag tcgaacgagt ccagccagaa
      301 gccttcaggc gactcgcgtc cgaggcggta ccggcggtct cggacgtggt ggaagtcgtc
      361 gacggaaatt cgaagggtgc accgcccggc ggcgtacaga gccgccgcca gctcgtcggc
      421 gaaggtcgtc ttgcccgagc cgtcgacgcc gtcgaccccg atcagcacgc agtcgtcggc
      481 ccacccggcc ggcacgagac cggcgacctg atcgagcagc gtgacacgcg acagcccgga
      541 ctggtggccc cgacgcgggt cgagggtcat ccggtcgggc ggcccggtca gagcgggtgg
      601 atcttggtgc tgtttcgagc gatgctgacc acggtctggc cgaacttcac ctcgagccgg
      661 tcgccgatga tccgtacgac agaccccatg ccgtggcgat cgtgggtgag gcggtcgttg
      721 acctcgaagg ggtgcacgtc cgggatcggc tgtggccgga aggggctgtt cggcaaatgc
      781 ggtttgctgg cttgggaacg ggggcgcatt cccccagtgt ggacctcttt gctccgcttg
      841 gctgcgacgg gggctgcttt gcaggtcagg gcacgtctcg ccgcgtcgtc ctgacaagat
      901 ggcctcgtgc acgtcgttat cgctccggac tgcttcaccg gaaccctcac ggcacagcag
      961 gctgccgagg ccatggcgac cgggtggcgc caggccgccc cgcacgacct gctgaccctg
     1021 cttccgctgt ccgacggtgg ccccggcttc gtggaggtgc tcagcgcggc gtttccccag
     1081 gcccagacgc tcgccgtcat cgtcaccgac ccgctggggc gggaggtccc ggcagcgatc
     1141 gccatggtcg actcggacgg gggccgcacg gcatacgtgg agtcggcgca ggccgcaggg
     1201 ctgcacctgc tggacgccgg cgagcgcaac cccaccctca ccagcacctg gggagtggga
     1261 cagctgatca gggctgccct cgaggagggc gccacgcgga tcgtcgtggg gctgggcggc
     1321 agcgccacga acgacgctgg tgcggggctg ttggcggcgc tcggcgtggg tgccccacgt
     1381 gacctggccc gtggcggcct cgcgttggcg gatctgcctg acgccgctct ggacggcctg
     1441 cagaacgccc gcgagaagtt cgcgggcgtc cggctggtgc tcgcgacgga cgtggactcg
     1501 cccctgcttg gcctgcaggg tgccagcgcg gtgttcagtg cccagaaggg cgccactccg
     1561 cagcaggcgc aggccctcga gggtgccttg ggcaggttcg tcgaggtggt gcgccgtacg
     1621 ctgcccgaga ccgctgacct gctgaccggc aagcctcgtc gtatcgacaa ggagcccggc
     1681 gccggcgccg cgggcggcct cggctacgcg ttgtacctgc tcggaggcac ccgcgtcagc
     1741 ggggtcgagg aggtgctccg ggccgtcggg tttcgcgagc tcgccgcggc cgcggacctg
     1801 gtggt
//
LOCUS       DASYFY010000713         2251 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_471669, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000713 DASYFY010000000
VERSION     DASYFY010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471669"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..1153
                     /locus_tag="VGN19_14450"
     CDS             173..1153
                     /locus_tag="VGN19_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017203620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 130 protein"
                     /protein_id="HEV7197132.1"
                     /translation="MTQHAFPHAEFPLGPFTAHDGNPILRPQGETWESASVYNPAAVV
                     KDDRVVLLYRAHADDIISHVGLATSEDGIHFDRHPEPVLSPTEDYEEFGAEDPRVVEI
                     DGTYYLTYTGWNRKSAQLCLATSTDLFTWTKHGPMFPDFNTFLPVGNGSPEPWSKAGA
                     ILPVPINGRYLMYFGEGSIYYAWSDDLIHWKPCSNDEPIMVPTPPGTFGSFLVEVGPQ
                     PIITNNGLILLLHNAAVKNDDGTVRYTCGQLLFSPDDPTTILAQMNRPWLEPQTFEDT
                     HGLVSNVTFVEGLVFFRDTWFAYYGQSDSTLGVATYKVGDTYALREDASE"
     gene            1153..>2251
                     /locus_tag="VGN19_14455"
     CDS             1153..>2251
                     /locus_tag="VGN19_14455"
                     /EC_number="5.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013118390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEV7197133.1"
                     /translation="MPWLHSPGHARWLEGESDRLLAFSRASRHPSGGFAWLDDDGNPE
                     LTRPVQLWITCRMTHVFALGELMGRPGCGPLVDHGIAALTRRFHDDEHSGWYAAIDED
                     GPRSRSKTAYEHAFVVLAASSAVVAGRPGSSALLEEALDVLMTRFWDDEHGMVVEEWD
                     RNWSTLDDYRGVNANMHTVEALLAAASATEDDELLQRALRIVTRVVHTLARSNAWRIP
                     EHFDQQWEPLLEYNVDAPAHPFRPYGATIGHWLEWARLTLHLRAALGEGTAPAWMLDD
                     ARSLFDAAVREGWAVDGAPGFVYTVDWEGRPVVRERMHWVAAEATAAAAALHHATGEI
                     LYAQWYQTWWDYIATDLLDLQRGSWMHELDPT"
BASE COUNT          374 a          836 c          699 g          342 t
ORIGIN      
        1 ccgactcgtg agctcgtggt cgagcccggc acgcacggtg ccggtcaccg ttcccgcggg
       61 gggcttcacc tacatccgcc gctagaccca tccgccgctg gtccggccat gaccgccaga
      121 ccgacgctgg ccctgcccca cccagagcaa cgaccccaac gaatgaggag acatgacaca
      181 gcacgccttc ccccacgccg agttccccct cggaccgttc actgcccacg acggcaaccc
      241 gatcctgcgc ccgcagggag agacgtggga gtcagccagc gtttacaacc cggccgcggt
      301 ggtcaaggac gaccgagtgg tgctgctcta ccgcgcccat gccgacgaca tcatctcgca
      361 cgtcggcctg gccaccagcg aggacggaat ccacttcgac cgccaccccg agccggtgct
      421 gtccccgacc gaggactacg aggagttcgg ggccgaggat ccccgcgtcg tggagatcga
      481 cgggacctac tatctgacct acaccggctg gaaccgaaag tctgcccagc tctgcctggc
      541 cacctcgacc gacctgttca cctggaccaa acacggcccg atgttcccgg acttcaacac
      601 gttcctgccc gtcggcaacg gctcgccaga gccctggagc aaggccgggg ccatcctccc
      661 cgtgcccatc aacggccgct acctcatgta cttcggcgag ggctcgatct actacgcctg
      721 gtctgacgac ctcatccact ggaagccctg ctccaacgac gagccgatca tggtgcccac
      781 gccgccaggc acctttggct cattcctcgt agaggtgggc ccccagccga tcatcaccaa
      841 caacggcctg atcctgttgc tgcacaacgc cgcggtgaag aacgacgacg gcacggtccg
      901 ctacacctgc ggccagctac tcttctcccc cgacgacccg acgaccatcc tggcgcagat
      961 gaaccgccca tggctcgagc cgcagacctt cgaggacacc cacggcctgg tctcgaatgt
     1021 caccttcgtg gagggtctgg tgttcttccg cgacacctgg ttcgcctact acggccagag
     1081 cgactccacg ctgggcgtgg ccacctacaa ggtcggcgac acctacgccc tcagagagga
     1141 cgccagcgag tgatgccctg gctccatagc ccgggccacg cccggtggct cgagggcgag
     1201 tcggaccgcc tgctcgcctt cagccgcgcc tcccgccatc cctccggcgg cttcgcctgg
     1261 ctggacgacg acggcaaccc cgagctcacc cgccccgtcc agctgtggat cacgtgtcgg
     1321 atgacgcatg tcttcgccct cggcgagctg atggggcgcc ctgggtgtgg gccgctggtc
     1381 gaccacggca tcgccgccct cacccgccgg ttccacgacg acgaacactc cgggtggtat
     1441 gccgcgatcg acgaggatgg gccgcgcagc cggtcgaaga cggcatacga gcatgcgttt
     1501 gtggtgcttg ccgcgtccag cgcggtcgtc gccggccgcc cgggctcttc cgcgctgttg
     1561 gaggaggcgc tcgacgtcct gatgacccgc ttctgggacg acgagcacgg catggtcgtg
     1621 gaggagtggg accggaactg gtcgacgctc gatgactacc gcggggtcaa cgcgaacatg
     1681 cacaccgtcg aggcgttgct cgcggccgcg agcgcgaccg aggacgacga gctgctgcag
     1741 cgcgccctgc gcatcgtcac gcgcgtggtg cacaccttgg ctcgctcgaa cgcgtggagg
     1801 attcccgaac acttcgacca gcagtgggag cccctcctcg agtacaacgt cgacgcgccg
     1861 gcccacccgt tccggcccta tggggcaacg atcggccact ggctggagtg ggcccgcctg
     1921 accctgcacc tgcgcgcagc gctcggcgag ggcacagcgc ccgcctggat gctcgatgac
     1981 gcgcggagcc tgttcgacgc ggcagtccgc gagggctggg cagtcgacgg cgcgccaggc
     2041 ttcgtgtaca ccgtcgactg ggagggtcgc cccgtggtcc gcgagcggat gcactgggtc
     2101 gctgcggagg caaccgcggc cgccgccgcc cttcaccacg ccaccggcga aatcctgtac
     2161 gcgcagtggt accagacctg gtgggactac atcgccacgg acctcctgga tcttcaacgg
     2221 ggttcctgga tgcacgagct cgaccccacg a
//
LOCUS       DASYFY010000714         2300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_156179, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000714 DASYFY010000000
VERSION     DASYFY010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156179"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /gene="pnuC"
                     /locus_tag="VGN19_14460"
     CDS             <1..639
                     /gene="pnuC"
                     /locus_tag="VGN19_14460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015663 - nicotinamide mononucleotide
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015890 - nicotinamide mononucleotide
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HEV7197134.1"
                     /translation="VVGNGFGFASAIGGMRRRVWAWPVGIVGNALLFTVFFGVAFNNP
                     QHVTLLGQAGRQVFFIITSIYGWWRWSQVRKARHGDEDAPAITPRWATWRERSGFIVV
                     WLVGMVIVQWAFRHIGLGFPPPDWYHWADAWIFVGSIIATYAMARGWNDFWLCWIAVD
                     LVGVPTLLKFHFYPSAVLYAVYGVLVIYGFFVWLKASREESVPTPELSEATA"
     gene            636..1862
                     /gene="ribB"
                     /locus_tag="VGN19_14465"
     CDS             636..1862
                     /gene="ribB"
                     /locus_tag="VGN19_14465"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009775093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEV7197135.1"
                     /translation="MIGLATIEQAFEALRAGRPVLVTDSEDRENEGDVILAAQTLTED
                     WMAWTIRHTSGYICVPLTSKRADHLGLPLMVADNRDPLRTAYTVSVDAAAGVTTGISA
                     GDRARTIKVLADPASDAEDLVRPGHVIPLRARRGGVLERPGHTEAAVDLCRLAGLAPV
                     AAIGELVNDDGTMMRLPGVLAMGADHGLPVITIAQLIAWRQRHDRVERLAQTTLPTRA
                     GTFAAVGFRDRLTGDEHIALLSPAGAASRNPLVRLHSECLTGDAFGSLRCDCGPQLER
                     SLERIAAEGGVLVYLRGHEGRGVGLVSKLQAYALQDQGFDTVDAQLELDLPVDGREYA
                     AGAAILVELGLGPVRLLTNNPAKVEAMRRLGVEVAAVERLSTAPTAANRAYLRTKRDR
                     MGHDLVIDASDAGESA"
     gene            1859..>2300
                     /gene="ribH"
                     /locus_tag="VGN19_14470"
     CDS             1859..>2300
                     /gene="ribH"
                     /locus_tag="VGN19_14470"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006943795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEV7197136.1"
                     /translation="MSGHGAPSVTADGSGLRVGIVAALWHKEVMDGLVAGAQRALRDA
                     GVVDVPLIRVPGTVELTVACARLAPAYDALVALGVVIRGGTPHFDYVCSGVTAGLGQV
                     SVATGCPIGFGVLTCDTEAQALDRAGLPGSAEDKGHEAAMAAVAT"
BASE COUNT          312 a          807 c          823 g          358 t
ORIGIN      
        1 gtcgtcggca acggcttcgg gttcgcgtcc gcgatcggcg gaatgcgccg ccgggtctgg
       61 gcgtggccgg tgggcatcgt gggcaatgcc ctgctcttca cggtcttctt cggagtggcc
      121 ttcaacaacc cccagcacgt caccctgctg gggcaggcag gccgccaggt cttcttcatc
      181 atcacgagca tctacgggtg gtggcgctgg agccaggtgc gcaaggcacg ccatggcgac
      241 gaggatgccc cagccatcac tccccggtgg gcgacgtggc gcgagcgcag tggcttcatc
      301 gtcgtctggc tcgtcggcat ggtgatcgtc cagtgggcct tccggcacat cggcctcggc
      361 ttccccccgc cggactggta ccactgggcg gacgcctgga tcttcgtcgg ctcgatcatc
      421 gcgacgtacg ccatggcgcg cggctggaac gacttctggc tgtgctggat cgccgtcgac
      481 ctcgtggggg tgccgacgct gctcaagttc cacttctacc cctccgcggt cctgtatgcc
      541 gtctacggcg tccttgtcat ctacggcttc ttcgtgtggc tgaaggcctc acgtgaggag
      601 tcggtgccca cgcctgagct gtcggaggcg acggcatgat cgggctcgcc accatcgagc
      661 aggcgttcga ggcgctgcgc gccggtcgcc ccgtcctcgt caccgacagt gaggatcgcg
      721 agaacgaagg ggacgtcatc ctcgccgcac agaccctcac cgaggactgg atggcgtgga
      781 cgattcgtca caccagcggg tacatctgcg tcccgctcac ctccaagcgg gcggaccacc
      841 tgggactgcc gctcatggtt gccgacaacc gcgaccccct gcgcaccgcc tacacggtga
      901 gcgtcgacgc tgcggccggg gtcacgaccg gcatcagcgc cggggaccgt gcccggacga
      961 tcaaggtcct cgccgacccg gcgtcagacg ccgaggacct ggtccgaccc ggccacgtca
     1021 tcccgctgcg agcccgccgc ggcggcgtgc tggagcggcc cgggcacacc gaggcagccg
     1081 tggacctctg ccggctcgcc ggcctggctc cggtcgccgc gatcggcgag ctggtcaacg
     1141 acgacggcac gatgatgcgg ctgcccggcg tgctggccat gggggccgac catgggctcc
     1201 ccgtcatcac gatcgcccag ctgatcgcct ggcgacagcg ccacgaccgg gtcgagcgtc
     1261 tcgcacagac cacacttccg acgcgagccg ggacgttcgc ggcggtgggg ttccgcgacc
     1321 gcctgacggg cgacgagcac atcgccctcc tctccccggc gggcgcagcc agccggaacc
     1381 cgttggtgcg ccttcactcc gagtgcctga cgggcgacgc gttcggctcc ttgcggtgcg
     1441 actgcggtcc ccagctggag cggtccctgg aacggatcgc agccgagggt ggggtcctgg
     1501 tctacctgcg aggtcacgag ggccgaggtg tcgggctggt ctccaagctc caggcctatg
     1561 cgctgcagga ccagggcttc gacacggtcg acgcgcagct cgagctcgat ctgccggtcg
     1621 acgggcgcga gtacgcggcc ggtgcggcga tcctcgtcga gctgggactg gggccggtgc
     1681 ggctgctcac caacaacccc gcgaaggtcg aggcgatgcg ccggctgggc gtcgaggtgg
     1741 cggccgtcga gcggctctcg accgcgccga ccgctgcgaa ccgcgcctac ctgcgcacca
     1801 agcgcgaccg gatgggccac gacctggtca tcgatgccag cgacgcgggc gagtcggcat
     1861 gagcggacac ggcgcgccct cggtgaccgc cgacggctca gggctgcgcg tgggcatcgt
     1921 ggcagcgttg tggcataagg aggtcatgga cggcctcgtg gccggcgccc agcgggcgct
     1981 gcgcgacgcc ggtgtcgtcg acgtcccgct catccgcgtg ccgggcacgg tcgagctcac
     2041 ggtcgcgtgt gcccggcttg cgccggcata cgacgcgctg gtggccctgg gcgtcgtcat
     2101 ccgtggtggc acaccgcatt tcgactacgt gtgctcgggg gtgacggcag gcctcggaca
     2161 ggtaagcgtg gcgacaggct gcccgatcgg tttcggggtc ctcacctgcg acaccgaggc
     2221 ccaggcgctc gacagggcgg gcctgcccgg gtccgccgag gacaagggtc acgaggcggc
     2281 catggccgcg gtggccaccg
//
LOCUS       DASYFY010000715         4710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_893173, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000715 DASYFY010000000
VERSION     DASYFY010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 4710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4710
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_893173"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..1014
                     /locus_tag="VGN19_14475"
     CDS             181..1014
                     /locus_tag="VGN19_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015779851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEV7197137.1"
                     /translation="MSSQPVQSWWECEFEDLRVELRQASGRRLAVVTLDLPERRNSMS
                     TPMTASWVRLISLLRNDADLAAVVVTGAAPAFSAGGDLSWIVSDPDASVVELRTRMLA
                     FYRSWLSIRDLEVPTIAAVNGSAIGAGFALALACDLRYAADDAKLGVPFTSLGLHPGM
                     ATTWSLPDVAGMAVARDLLLTGRIVTGGEALGLGLVSRALPVEQVLPAAIAAAEGIAG
                     NAPLATRLTVQALRGAGHASFEDALQWEALAQAVTLATDDLHEGIAAAAAKRTPTFQG
                     R"
     gene            1093..1674
                     /locus_tag="VGN19_14480"
     CDS             1093..1674
                     /locus_tag="VGN19_14480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012867723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEV7197138.1"
                     /translation="MGTTDIEVRRSRRRRRTVSAYREGGRTIVLIPARFTKAEEQQWV
                     TTMVERLARGDRKRRPSDAQLRARAAELSQRHLGGLARPTSIRWVTNQNSRWGSCTPA
                     DGSIRISTRVQGMPGYVLDYVILHELAHLLAPGHGPEFWSLLKGYARLERARGYLEGV
                     AATAGLELSDGAVQDELAQDDLGQAALDFGPSD"
     gene            complement(1680..2276)
                     /locus_tag="VGN19_14485"
     CDS             complement(1680..2276)
                     /locus_tag="VGN19_14485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEV7197139.1"
                     /translation="MTASSPASPQPDVPAAYRALRADAMGVLHSWRAPDAGQERLRGE
                     LLAHCEQHPGALWKQGPPAHLTASTLVLNRGLDEVLLTLHAKARMWLQFGGHFEPSDT
                     TVLAAATREAREESGLDELDLHPELVQLDRHRLLASGFGRCAEHLDLRYAAVTDTPHD
                     YAVSDESLDVAWWPVGSLPPESQAEIRPLVDAARRVLG"
     gene            complement(2273..3709)
                     /locus_tag="VGN19_14490"
     CDS             complement(2273..3709)
                     /locus_tag="VGN19_14490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013770338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEV7197140.1"
                     /translation="MSDHPETPDQPGAEPGDDAGKSASGLPPEIEQMLASLTGGTVDP
                     EMAKALRDMGIDRIDPAMLEMMVGQMQAMFASTDTDAFNVALATETARKAVSEAGDAV
                     VGDAAIRQTAQATQVAELWLDEVTAFEAPGITTHAWSRAEWVEASMPVWRTLVEPVAE
                     GVGRAVGDAMRAQLEQLGEGAIPEGMLPAGVDPSALLGQMEPMLAKMSGSMFGMQVGQ
                     AVGALATETVSGTEVGLPLVADRSVVLLPGNVEAFAEGLGIDLEQVRLYLAVREAARV
                     RLFSEVPWIGPQLVAAVRDYARDITIDTDRIESALQSVDPTDAGALQSALQDQLFRPE
                     PSPAQRAALGRLETYLALVEGWVDVVTDRATRDHLPQAAALGEAVRRRRATGGPAEKA
                     FAGLVGLELRPRRLRDAANLWSALESAQGAAGRDAPWGHPDIAPTSADLDDPLGYVER
                     VGSPGTDGVDKAIDEAIDEILRQGEDGA"
     gene            3840..>4710
                     /locus_tag="VGN19_14495"
     CDS             3840..>4710
                     /locus_tag="VGN19_14495"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEV7197141.1"
                     /translation="MGTGDPASRALLRALVVAAARGSATLAVGATPTTPHDGQARIGT
                     VTAVDLERPPVGGTEFRLADPGDPSLSEALRGVHAAAYVAASTDLAADLALGARVRRE
                     RSLRRAQTVITAAAAAGLRRLVVVTGAQVYGAEPDNAVPLEEDAPLRAPSDQGQVGDL
                     MDVELLVAVARDVHPGLRITVVRPAALVGPGVDTITTRHFEAPRLLTVRGATPGWQFC
                     HVDDLASAVALAVAVTPTDTLGPVLTVGSLGHLEQSDLERLTGMRRVELSLRAALGTA
                     DRLHRVGVLPAPAS"
BASE COUNT          647 a         1671 c         1692 g          700 t
ORIGIN      
        1 tgcacttcac gcagtagaac tcgcccttgt aggtctcgtc agccatcgcc aatgtctcct
       61 tgttgttcgc ggcgcagggt gcgccctcgg actccggcca acttagacca tgctgagcac
      121 aaaatcccgt aagggggcca ggtagccgtg ctcagccgcc gggcagctag ggtgccccag
      181 atgagcagcc agccggtgca gtcgtggtgg gagtgcgagt tcgaggacct gcgggtcgag
      241 ctcaggcagg cctcgggcag gcgcctcgcg gtcgtcaccc tggatctgcc ggagcggcga
      301 aactcgatga gcacccccat gacagcgtcc tgggtgcggt tgataagcct gctgcgaaac
      361 gacgctgacc tggccgccgt cgtggtgacg ggcgccgccc cggcgttcag cgcgggtggc
      421 gacctctcct ggatcgtgtc cgatccggac gcctccgtcg tcgagctgcg gacccggatg
      481 ctggccttct accggtcctg gctgtcgatc cgggacctcg aggtcccgac gatcgccgcg
      541 gtgaacgggt cggcgatcgg ggccggcttc gccttggcgc tcgcctgcga cctgaggtat
      601 gccgcggacg acgccaagct cggcgtgccg ttcacctcgt tggggcttca ccccgggatg
      661 gccacgacct ggtccttgcc ggacgtcgcg gggatggcgg tggcccggga cttgttgctc
      721 acgggtcgga tcgtgaccgg cggtgaagcg ctgggcctgg gcctggtctc ccgagcgcta
      781 ccggtcgagc aggtcctccc ggcggcgatc gctgccgccg aagggatcgc cgggaacgct
      841 ccgctggcga cccggctgac cgtccaggcg ctgcgtggcg cgggtcatgc gagcttcgag
      901 gacgcgctcc aatgggaggc actggcgcag gcggtgaccc tggccaccga cgacctgcac
      961 gaggggatcg cggcggcggc ggccaagcga acgccgacgt tccagggccg atagagggcc
     1021 gatagagggc cgatagccgg ccgatagccg cggttgccac gggatgtcgg gaccctcgcc
     1081 tatcgtgagg tcatggggac gaccgacatc gaggtcagac ggagtcgacg acggcggcgc
     1141 acagtcagcg cctaccgtga gggcgggcgg acgattgtgc tcatccccgc tcggttcacc
     1201 aaggccgagg agcagcaatg ggtgaccacg atggtcgagc gactggcccg cggtgaccgc
     1261 aaacgtcgtc ccagcgacgc tcagctcagg gcgcgggcag ctgagctgtc ccaacgccat
     1321 ctcggcggtc tggctcggcc gacgagcatc cgctgggtga cgaaccagaa ctcgcgctgg
     1381 ggctcgtgca cccccgccga tggcagcatc cgcatctcga cccgggtcca gggcatgccg
     1441 ggttacgtct tggactacgt catcctccac gagctcgcgc atctgctcgc ccctggtcac
     1501 gggcccgagt tctggtccct gctcaagggt tatgcgcggc tcgagcgcgc ccggggctat
     1561 ctcgagggcg tggccgccac cgcgggtctg gagctctctg acggggccgt gcaggacgag
     1621 ctggcgcagg acgacctagg acaggcggct ctggacttcg gtccctccga ctgagggcgt
     1681 cagcccagca cgcggcgagc ggcgtccacc agggggcgga tctctgcctg gctctccggc
     1741 ggcagggacc ccaccggcca ccaggccacg tccagggact cgtcgctcac ggcatagtcg
     1801 tgcggggtgt cggtcaccgc ggcataccga aggtcgagat gctccgcgca ccgaccgaac
     1861 cccgacgcca gcagccgatg ccggtcgagc tggaccagct cggggtgcag gtcgagctcg
     1921 tccaggccgg actcttcgcg ggcctcgcgg gtggcagcgg ccagcaccgt cgtgtccgat
     1981 ggctcgaaat gaccgccgaa ctgcagccac atccgggcct tggcgtgcag ggtcagcagt
     2041 acctcgtcca acccgcggtt gagcacgagg gtgctggccg tcaggtgagc gggaggcccc
     2101 tgtttccaca gggcgcccgg gtgctgctca caatgtgcga ggagctcacc tcgcaagcgc
     2161 tcctgcccgg cgtccggcgc gcgccacgag tgcaggaccc ccatcgcgtc agcgcgaaga
     2221 gcgcggtagg ccgcgggcac gtcaggctgt ggtgaagcag gcgacgacgc ggtcacgccc
     2281 cgtcctcacc ctgacgaagg atctcgtcga tggcctcgtc gatggccttg tccacgccgt
     2341 cggtcccggg cgagcccacg cgctccacgt agccgagcgg gtcgtcgagg tcggcgctgg
     2401 tcggagcgat gtcggggtgg ccccacggcg cgtcgcgacc ggccgccccc tgcgccgact
     2461 ccaacgcgct ccagaggttc gcggcatccc gcagccgccg gggtcgcagc tcgagcccga
     2521 ccagcccggc gaaggccttc tcggcggggc cgccggtggc gcggcgtcgg cgcacggcct
     2581 cgcccaaggc ggcagcttga ggcaggtggt cgcgggttgc ccggtcggtc acgacgtcga
     2641 cccacccctc gaccagggcc agataggtct ccaaccggcc gagggcggct cgctgcgccg
     2701 ggctcggctc ggggcggaac agctggtcct gcagggcgga ctgcagtgcc cctgcgtccg
     2761 tggggtccac cgactgcagg gcgctctcga tgcggtcggt gtcgatcgtg atgtcccgcg
     2821 cgtagtcccg cacggccgcc acgagctgcg ggccgatcca ggggacctcg ctgaacaggc
     2881 gcactctcgc cgcctcgcgc acggccaggt acagccggac ctgctcgagg tcgatgccga
     2941 ggccctcggc gaacgcttcg acattgcccg gtaggaggac cacggaccgg tcggcgacca
     3001 ggggtagccc gacttcggtg ccgctcacgg tctcggtggc cagggcgccg acagcctgac
     3061 cgacctgcat cccgaacatg gagccgctca tcttcgccag catcggctcc atctggccca
     3121 gtagggctga ggggtcgacc ccagcaggca gcatcccttc ggggatcgcg ccctcgccga
     3181 gctgctcgag ctgggcccgc atagcatcgc cgaccgctcg gcccaccccc tcggccaccg
     3241 gctcgacgag cgtgcgccag accggcatgc tcgcctcgac ccactccgcc cggctccacg
     3301 cgtgggtggt gatccccggc gcctcgaagg cggtcacctc gtcgagccac agctcggcca
     3361 cctgggtcgc ctgtgcggtc tggcggatcg cggcgtcgcc gaccaccgca tcgcccgcct
     3421 cggagacggc cttgcgcgcg gtctcggtag ccagcgcgac gttgaacgcg tcggtgtctg
     3481 tgctggcgaa catcgcctgc atctggccga ccatcatctc cagcatcgcc gggtcgatcc
     3541 ggtcgatgcc catgtcgcgc agcgctttcg ccatctcggg gtcgacggtg ccgccggtga
     3601 gactggcgag catctgctcg atctccgggg gcaggccgga ggctgacttc ccggcatcgt
     3661 cgccgggctc tgcgcccggc tggtcggggg tttcggggtg gtcggacaca acggctcctc
     3721 ggcagtcctg agaggatggt ctcgactaag acaaccacgc ggaggccaca gtgagttccc
     3781 ctgcgagccc tcagcggcgc gccgttcgct cgcggcgtac cacgatcgac gtggcggtcg
     3841 tgggcactgg cgacccagca agccgcgcgc tcctgcgcgc cctggttgtc gcggcagcac
     3901 ggggatcggc cacgctggcg gtcggtgcaa cgccaacgac accgcacgac gggcaggctc
     3961 gcatcggcac ggtgaccgcg gtcgacctcg aacgcccgcc ggtgggcgga accgagttcc
     4021 ggctcgccga cccgggcgac ccgtcgctgt cggaggcgct gcgcggtgtg cacgccgcgg
     4081 catacgtggc ggcgagcacc gatctggccg ccgacctggc cctcggcgcc cgggtcaggc
     4141 gggagcgaag cctgcggcgc gctcagaccg tgatcaccgc cgcggccgcg gccgggctgc
     4201 gccgactcgt ggtggtgacg ggcgcccagg tgtatggagc ggagcctgac aacgccgtgc
     4261 cgctggagga ggacgccccg ctgcgcgccc cgtcggacca gggtcaggtc ggcgacctca
     4321 tggacgtcga gctgctcgtc gcggtcgcgc gcgacgttca ccccggcctg aggatcacgg
     4381 tcgtccgccc cgctgctctc gtgggcccgg gggtcgacac catcaccact cgacacttcg
     4441 aggcgccgcg cctgctgacc gttcgaggcg ccacgccggg ctggcagttc tgtcatgtcg
     4501 acgatctcgc ctcggcggtg gcgctcgcgg tggcggtgac accgacggac acgctgggtc
     4561 ccgtcctgac cgtcggctcc ctgggccatc tcgagcagtc cgatctcgaa cggctgaccg
     4621 gaatgcgcag ggtcgagctc agcctccgcg ccgctctggg aactgcggac cggttgcacc
     4681 gcgttggagt gctgccggcg ccggcgagcg
//
LOCUS       DASYFY010000716         1644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_998550, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000716 DASYFY010000000
VERSION     DASYFY010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998550"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VGN19_14500"
     CDS             complement(<1..269)
                     /locus_tag="VGN19_14500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197142.1"
                     /translation="MPNRLAVEGRLAVGGQDAVEGPLAAVPPLAVLAVVAWCVATRGG
                     TGPFDLALACAALGVALVLAARNAPGPQLRAPRRTALLFLALQAWL"
     gene            complement(269..1375)
                     /locus_tag="VGN19_14505"
     CDS             complement(269..1375)
                     /locus_tag="VGN19_14505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197143.1"
                     /translation="MSAQVGAPRCGALGVIGADLLGGDMAGLPRPGWTAVTIGVIALT
                     TLGAATPVARGLYEVAYPGPGSNVVTPGESLERALTKAQLTTSFNTKTLIQDVPAIFT
                     ATIVYGAKPPSGAPTIRVAYANDATLAPLQKDQFEITPQTDSRQNLDEGHLRPAGGYE
                     LDWRWQVTPRASGSLSLRLEIQPVLVVIGSNRTDLETRNKPIAVTVKVNPAAAALDEV
                     KRSAQNLEIGHPTDMVVGEEADWTATLDLKGHADVVKAQVNLIQAAGSAPTTISLSES
                     RLTGDRLVSRWAVTPTDRGPVKLAFAIDLSARAGDKTIRDATEVPLAVIAHVEPSFWE
                     RVQAPVLWLTPLVALLGGVLGLRAALRTRRRGDQ"
     gene            complement(1462..>1644)
                     /locus_tag="VGN19_14510"
     CDS             complement(1462..>1644)
                     /locus_tag="VGN19_14510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197144.1"
                     /translation="LRLLGPDETRPGLGARRGRVDPRDNAAPGSPCPAQRVAAQVGYG
                     TPGQEMVKRESSHLTL"
BASE COUNT          255 a          568 c          542 g          279 t
ORIGIN      
        1 agccaggctt ggagggccag gaacaacaac gcggttcgtc gtggcgccct cagctgcgga
       61 ccaggcgcgt ttctggcggc caggacgagc gcgaccccca gcgcggcaca ggcaagtgcc
      121 aggtcgaacg gcccggtacc gccccgggtt gcgacgcacc aggcgacgac tgcgagaacg
      181 gccagcgggg gaaccgccgc gagtggtccc tcgaccgcat cctggccacc gacagccagt
      241 cggccctcaa cggccagtcg gttcggcatc attggtcacc gcgcctgcgg gtgcgcaagg
      301 ccgccctcag gccgaggact ccgccgagca gggctacgag aggcgtcagc cacaggacag
      361 gtgcttgcac ccgttcccag aacgagggtt ccacgtgggc tatgacggcc agcggcacct
      421 ccgtcgcatc tctgatggtc ttgtctcctg cgcgtgcaga gaggtcgatc gcgaacgcga
      481 gcttgaccgg cccccggtca gtcggagtca ctgcccagcg gctgaccagc cgatcgccgg
      541 tcagcctcga ttcgctcagg ctgatggtcg tcggtgccga cccggccgcc tgaatcaggt
      601 tgacctgtgc ctttacgacg tccgcgtgac ccttcaggtc aagggtcgcc gtccaatcgg
      661 cttcctcacc gacgaccatg tccgtagggt ggccgatctc caggttctgc gcggatcgct
      721 tgacctcgtc gagggcggct gctgccgggt tcaccttgac ggtgacggca atgggcttat
      781 tcctcgtttc gaggtccgtc ctgttggacc cgatcacgac aagcacgggc tggatctcga
      841 gccggagtga gagtgaccca ctggcgcgcg gggtcacctg ccacctccag tccagctcgt
      901 agcctcccgc cggccgcaag tgaccctcgt cgaggttctg ccgactgtcc gtctgtggcg
      961 tgatctcgaa ctggtccttc tgcagcgggg cgagggtcgc gtcattcgcg tacgcgaccc
     1021 tgatggtcgg ggcgccactc ggtggcttcg ccccgtagac gatggtcgcg gtgaagatgg
     1081 ccggcacatc ctggatgagc gtcttcgtgt tgaagctcgt cgtcagctgg gccttggtca
     1141 gggcccgctc caaggactct cctggcgtga ccacgttgct gcctggcccc ggataggcaa
     1201 cctcgtacag accccgcgcg accggggttg cagcaccgag cgtcgtcagg gcgatcacgc
     1261 cgatggtgac agcagtccat cccggtctcg gcagcccggc catgtcccct cccaacaggt
     1321 ctgcgccgat gacgccgagg gccccgcacc gcggggcgcc aacctgcgcg gacatactcc
     1381 ttcgtttgat aaggaacggc cgcggatgcg cttgatacaa ccgtccggac gcgcaacgcc
     1441 cgccaaccgt tcggttgggc gtcagagggt caggtgcgac gactccctct tgaccatctc
     1501 ttgacccggc gtgccgtagc ccacctgagc ggcgactcgt tgagccggac agggtgagcc
     1561 cggagcagcg ttgtccctcg ggtccacccg gcctcggcga gcacccagac cgggtctcgt
     1621 ctcgtccgga ccgaggagtc gcaa
//
LOCUS       DASYFY010000717         5299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_156765, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000717 DASYFY010000000
VERSION     DASYFY010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 5299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5299
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156765"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..184)
                     /locus_tag="VGN19_14515"
                     /pseudo
     CDS             complement(61..184)
                     /locus_tag="VGN19_14515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330561.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
     gene            1085..4261
                     /locus_tag="VGN19_14520"
     CDS             1085..4261
                     /locus_tag="VGN19_14520"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEV7197145.1"
                     /translation="MEDFRFHLLGPMEALVDGVPAKLPGVAERALLVQLLLAPGRILP
                     ATLLVDRLWSDATLPVDPMNALQIRVSKLRRALRTMGLEELVTRDGVGYRADVAPSQV
                     DALDFADKVRSARADATDAAAAGGYEQRHLQAYDDALALWRGAPLSDFVTEHWAGAET
                     ARLVGLRLAAVTERAQVALAVGRHLEVIGDLEPMVTQDPTLEALASLLMLALYRSGRQ
                     ADALDVYTRTRIGLDEALGLEPSVSLRSLHERVLRQDKSLGDGSDVAAPSPVASVPSR
                     SGEGSTTPTNLPTVLRPLIGRDEQLDSLSTMLGDARLLTLIGPGGAGKTSLALAIAVR
                     AADSFPDGAFGVRLASVENGDQVPLAVADALGVPLDGSSAERDVRQRLISFLLRRHML
                     LLVDNCEHVVDAAASLIDDILGRCPRVTVLATSREALAVPDEVQVTVAPLPTPPEDTP
                     PSRVLEYPAAQLFAERARAVRPGFVFDHDDLLAVGHISRSLDGIPLALELAAARVAAM
                     SPGEIADRLAQRFSFLTSGTRTAEARQQTLRATVEWSYALLSDVERRAFNRLSVFRGG
                     WSLTAAEAVLADEVLSSGVVLDTIGRLVERSMVWVERGRTTRYRMLETLREYAAEQLH
                     TSGEAETFAGRHAGYFRALAERAEVELRGHGQRETLQLLRDEQPNIRAAITWLSRPGG
                     DIDSALVTAGSLGMFWHLGRHLEGREVLGRLMANTDGSPRARARALQAVSIVERPRGC
                     LVHPHPRCAETAEESLNIFTGLDDPWRAALSKVLVSVEGVTGAFRERSDAFLDEAEQE
                     FSREGDAWGRAVIGFVRLETAIKAGDVDAAQRLGPATAAAFRQLEDLWGLSATLYHYG
                     WGLRQFGRLEDGARVLEEAIDVAASAGLWNTVQWAYADLAIEKVYVCDLRTASDLFDR
                     AANASQKVGDGAGEVLAAYGYGLLGEVNASWVEASQRYEEAVIGFERLGTPVWVGIAL
                     AGQGRCAEAIGDLAAAGEHFENALALGRRLGEPSVTAASLEGLGRLARARGEHEYGER
                     MSSEAAQIRAQFARPAPPHERREPAAAG"
     gene            4908..5111
                     /locus_tag="VGN19_14525"
     CDS             4908..5111
                     /locus_tag="VGN19_14525"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEV7197146.1"
                     /translation="MSEMNLHVDGMGCRRCVREVTARLRDVPGVRTVVADSGTSTVRL
                     SGSMTAEDVLDAFTETTYHPDLG"
BASE COUNT          802 a         1783 c         1859 g          855 t
ORIGIN      
        1 gtgctcgctc aggtcggtgc ccttggggat gtagtcgcgg agcaggtcat tagtgttcta
       61 gttggtgccg cgctgccacg cagaggcgga gtcgcagaag tacacttggc cgccgagggt
      121 cttggtcatc gttaggtgtc tgtccatctc ggtgccctgg gccgcaggtg atcgacttcc
      181 gcaagtcgga ccgcagactg gccagggccg tcttcggggc gtcgccgtcc cggcgacgca
      241 cgtgcagcag ccggaccaga cgcgtggtgc gctcgacgag gtgcagatcg ccgagcaatg
      301 tccggtccca atgatgtacg ggtcgcacgg gggctgcggt gaccagattg ctctgggtcc
      361 gtttccccgg accgccctcc gcaccggacg tgcgactttc atcgcatccg gcgctccccg
      421 gatcgcggcg attacgccgc cgccattggt gtcggcgtgc tggtccgtgg tgtggggata
      481 tgggtcgccc gccaccggta ccgggtgacc ggcgccctgg tggcatcgag catgacgagc
      541 ccgtttgctg ccggtcggtt gcctggcctt ccggtcagaa accgccggta gggttgcacc
      601 cagttcaatc gcttgtgccg tttgagcagc cattgggtgg tccggtcacg atgctgaacc
      661 tgctccggtt ccgggaatgg gctgactact cgaagttccc ggacgccgtt cctgacgagc
      721 cgatctccgg caggcaggct acgacaggta catggaccac accacgccgt tcctgactgc
      781 gacgggcgga accgtggtgt tcctcggcga cggtggagcc agtctggttg gaccgagcga
      841 ggaacgatgg ggccttggtc atggccgtcc gccagtcgag cgtgcagagc ttcctcgcgt
      901 tcgcatcgat caggactacc tggctggcac ctgccacagg acggcggctc tagctgattc
      961 gaggctttgt ccattcgtcg agcgcgccat cgtctgacct ggtcccacgc cctcgactct
     1021 ggggacgatt gaacaggcgg gtcaccgcgg gagacgatga ccgcgtctac cgaaggggga
     1081 cggcgtggaa gacttccgat tccatctgct cgggccgatg gaagcgctcg tggacggagt
     1141 gccggcgaag ctgccggggg tggccgaacg cgccctgctg gtccagctgc ttctcgcgcc
     1201 tggccggatc ctcccggcca ccttgctcgt cgaccggctg tggtccgacg cgacattgcc
     1261 ggtggacccg atgaacgccc tgcagatccg ggtctccaag ctgcgccgag ccctcagaac
     1321 catggggctc gaggaactgg tcacgcgtga cggagtcggc tatcgcgccg acgtcgcccc
     1381 gtcccaggtc gacgccctgg atttcgccga caaggttcgg tcggcccgag ctgacgctac
     1441 cgatgctgcc gctgctggtg ggtacgagca gcgccacctg caggcctacg acgacgcgct
     1501 ggcgctgtgg cggggtgcac cgctcagcga cttcgtgacc gagcactggg cgggagcgga
     1561 gaccgcccgg ctggtagggc tgcgccttgc cgccgtcacc gagcgcgccc aagtggcgtt
     1621 ggcagttggg cggcacctcg aggtcatcgg tgacctggag ccgatggtga cccaggaccc
     1681 gaccctggag gccctcgcga gcctgctgat gctggccttg taccgcagcg gacgccaggc
     1741 cgacgcgctg gacgtctaca cccgcacccg catcggcctt gacgaggcac tcggactgga
     1801 gccttcggtc tcgctccgct cgttgcacga gcgggtgctg cggcaggaca agtcgctggg
     1861 cgatggctca gacgtggccg ctcccagccc ggtcgcttca gtccctagtc gcagcggcga
     1921 ggggtccacg accccgacca acctcccgac cgtcttacgt cccctgatcg gccgcgacga
     1981 gcagctcgac tccctgtcca ccatgctggg cgacgcacgg ctcttgacac tcatcgggcc
     2041 aggcggagcg ggcaagacgt cattggcgct tgctatcgcg gtccgggccg ccgactcatt
     2101 ccccgacgga gcgttcggcg tcaggctggc gtcggtcgaa aacggtgacc aggtaccgct
     2161 tgcggtcgcc gacgcgttgg gagtcccgct ggacggaagc agtgctgaac gggacgtccg
     2221 ccagcggctg atctcgttcc tgttgcggcg acacatgctg ctgctggtcg acaactgcga
     2281 acacgtcgtc gatgcagcgg caagcctcat cgacgacatc ctcggacgat gcccccgcgt
     2341 cacggttctc gccaccagtc gcgaggccct ggccgtgccc gacgaggtgc aggtcacggt
     2401 ggctccgctg ccaaccccgc cggaggacac gccgcctagc cgggtgctgg agtatccggc
     2461 cgcgcagctg ttcgccgagc gtgcccgcgc cgtccgaccc ggcttcgtgt tcgaccacga
     2521 cgacctattg gctgtcggcc acatcagccg gtcgctcgac ggcatcccgc tggccttgga
     2581 gctcgcggct gctagggtcg cggcgatgtc accgggcgag atcgctgaca ggctcgccca
     2641 gcgcttctcg tttctgacct ccggcactcg gaccgccgaa gcccgccagc agaccctgag
     2701 ggcgacggtg gagtggagtt acgcgctctt gagcgacgtc gagcgccgag cgttcaaccg
     2761 gttgtcggtc tttcggggcg gctggtcgtt gacagccgcc gaagcggtcc tggcagacga
     2821 ggtgctgtcc tccggcgtcg tgctcgacac cataggccgg ctggtcgagc ggtccatggt
     2881 gtgggtggag cgcggccgca cgacccgtta ccggatgctg gagaccttgc gcgagtacgc
     2941 cgccgagcag ctccacacct caggtgaggc cgaaacgttc gcggggcggc atgcaggcta
     3001 cttccgggcc ttggccgagc gagccgaggt cgagctccgc gggcacggcc aacgcgaaac
     3061 cctgcagttg ctgcgggacg agcagccgaa catccgggcc gccatcacgt ggctgtcccg
     3121 gcctggtggt gacatcgact cggctttggt gacggccggg tccctgggga tgttctggca
     3181 tctgggccgc cacctcgaag gccgggaggt cctgggccgc ctgatggcga acaccgacgg
     3241 gtctccgcgg gcccgggcca gggcactcca ggcggtctcc atcgtggaga ggccgcgcgg
     3301 atgcctggtg cacccccatc cgcggtgcgc ggagaccgcc gaggagagcc tgaacatctt
     3361 caccggcctc gacgacccct ggcgtgcggc gctgtcgaag gtgttggtgt cggtggaagg
     3421 ggtgaccggc gcgtttcgtg aacgctccga cgccttcctg gacgaggccg aacaggagtt
     3481 ctcacgcgag ggcgacgcct ggggccgggc ggtcatcggg ttcgtgcgcc tggagaccgc
     3541 gattaaggca ggcgacgtcg acgcagccca acgtctgggc cccgcgacag ctgccgcctt
     3601 ccgccagctc gaggacctgt ggggcctgtc ggccacgctg taccactacg ggtgggggtt
     3661 gcggcagttc ggcaggctcg aagacggtgc ccgggtcttg gaggaggcca tcgacgtcgc
     3721 cgcgtccgca gggctgtgga acacggtcca gtgggcgtat gccgacctgg ccatcgagaa
     3781 ggtctacgtc tgcgacctga ggaccgcgag cgaccttttc gaccgagccg cgaacgcctc
     3841 gcagaaggtc ggcgacggcg cgggggaggt gctggctgcc tacggctacg gcctgctggg
     3901 cgaggtgaac gccagctggg tggaagcctc acagcggtac gaagaagccg tgatcggctt
     3961 cgaacggctc ggcacgccgg tgtgggtcgg catcgccctg gccggtcaag gaaggtgtgc
     4021 cgaggccatc ggcgacctcg ccgcggctgg ggaacacttc gagaacgccc tggccctcgg
     4081 gcggaggctc ggcgagccga gcgtgacggc ggcctcgctc gaagggctgg ggaggctcgc
     4141 ccgggcccgc ggggagcatg agtacggcga acggatgtcc agtgaggctg cacagatccg
     4201 cgcccagttc gcccggccgg cgccaccaca tgagcgtcgg gagcccgccg cagcggggta
     4261 gctcgaaccg cgaccggcgc ccactcacct gagcgccccg catcagacag ccgggagaga
     4321 cggggctacc ggaaccccgg gtcagcatcc gctcccgcag cgcggacaga aactcgactg
     4381 ccggccgtcg agctcctgcc tactccagca ggcgcgccgg cgagaatcca ccgcggaccc
     4441 gacgcgggag gtgcagtcgg ttctggtcct tgtcgtgctc atgctcccga agacctgtcc
     4501 tgacggggtg ccccttaccc gggtcacggc ccgagtctga cgaacatcgc aacgtcggtc
     4561 agcggtccga agcctccggt tgtctatctc caaatgcggg atacgtgggt ccagcggggt
     4621 cgtggctggg tcgcctatgg gccggccggt gagggtctga ggtcccggtt ggtgatgggg
     4681 cgagcgtggc cgtggcgtgt gttcgacgcc tgtcccagcc ctggccgctc gatggctgga
     4741 ggacgcacga gcccgggccg cggggccgag cgcaccctgc gcgagcctga ctgacccctc
     4801 atgtgccgct cacgcgatgc gcgcccttcg acacggacag tcatcagaca gcgttgacga
     4861 cgaccgtggg cctcccgaac gaccccacat ctggaaagcg agcacgaatg agcgagatga
     4921 acctgcacgt cgacggcatg ggctgccgcc gctgcgtccg ggaggtcacc gcccgactgc
     4981 gcgacgtccc cggcgtgcgg accgtcgtcg ccgactccgg cacatcgacc gtccgactca
     5041 gcgggtcgat gacggccgag gacgtcctcg acgccttcac cgagacgacc taccaccccg
     5101 acctgggctg aacagcgcca cgacagagtt cggacagagc ctggtgtgac gctcccgaac
     5161 agagcagaac cccacaacac aacccacagc cgaaagagct ggttcgtcac tcaggaaggg
     5221 cccgccatgt cgtccacttc actcttcgcg gcaccgagca gcaggcgctg gctcgcgctc
     5281 gggctcagac cctcaggca
//
LOCUS       DASYFY010000718         6251 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_525390, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000718 DASYFY010000000
VERSION     DASYFY010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 6251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6251
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525390"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VGN19_14530"
     CDS             complement(<1..251)
                     /locus_tag="VGN19_14530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013493043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B12-binding domain-containing radical SAM
                     protein"
                     /protein_id="HEV7197147.1"
                     /translation="MPVESVFDRLEPLLPQVTKPVQYVGGELNAVVKDWDSVQVRWCL
                     MYPDAYEVGVPNQGVQILYEVLNERPDALAERTYAVWPDL"
     gene            695..1480
                     /locus_tag="VGN19_14535"
     CDS             695..1480
                     /locus_tag="VGN19_14535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEV7197148.1"
                     /translation="MYDTMPGTRLALTWLERHQRAAWAALLAYGPDAVPVGTSAIALL
                     GVQGLPMRITPEAALPNGRSAISRDGLQLRQFDAGMVCVHVAGRLVASPEWALAQAVP
                     ELDRDHAVAVMDSSQNLGLLDADGLQRAHDLARHRRGVDRTHGWWAQSDARAESALET
                     FGRLDCVDGAVPPDDLQVPITTIDGRFLGRGDMGWRQRNGRWLIAELDGREVHELPTA
                     LLHDRHRQNGFLIDGDADVLRFTYRDLRPRGAIARTVLRRLAG"
     gene            complement(1992..3176)
                     /gene="rodA"
                     /locus_tag="VGN19_14540"
     CDS             complement(1992..3176)
                     /gene="rodA"
                     /locus_tag="VGN19_14540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018155635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEV7197149.1"
                     /translation="MTYGYPTTVKRPAGSGVVSRIVGGSSYLRRLDWILLLSAVALSV
                     IGAFCIWSATRTKLESFGNDPQTFFKRHLINLVIGLVLGFLFSRIDYRLLRAYAPVLF
                     GVSVLGLIVVLSPIGSTVNGTKAWIELPAGFSIQPAEFTKLGLILVVASLLSERRDGE
                     SEPATRDILQVLALFAVPAALVLIQPDLGTALIMGVAVFGMIAVSGAKTRLVVGLLLS
                     VVVVAFGAVQLGVLKPYQVQRLTAFADPSGGGSTYGYNTQQARIAIGSGGLTGEGLFH
                     GAQTQRHFVPYNQTDFVYSVAGEELGFVGGAGIILLFGVVLWRGIRIASRATDMFGRL
                     VAVGILCWLSFQAFENIGMNLGIMPVTGVPLPFLSYGGTSMFASWIAIGLLQNVHLRS
                     QD"
     gene            complement(3173..5497)
                     /gene="mrdA"
                     /locus_tag="VGN19_14545"
     CDS             complement(3173..5497)
                     /gene="mrdA"
                     /locus_tag="VGN19_14545"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEV7197150.1"
                     /translation="MTERSTLRLVVLGALLFSLVATLVGRLFFLQVINADAYRQQSST
                     NNVRNVITPAPRGLILDQAGRPLVANRTSLVVSLDRAEISSQKDHGKAVLTRLAKALG
                     TTYQILDEKIQLCGTKGAVRGVCWNGSPFQPIPVAKDVTTNLALSIMERRASFPGVVA
                     ELEDLRDYPSLYGVNAAQTLGYLGAVSQEELDAQAQAVADGKLPAAQATLTASDLVGR
                     GGLEQQYNSYLRGTDGVKELAVDVAANVTGTVSQTAPTPGDDVVTNIDARLQAVVEQQ
                     LKAAIDRARATQAKVGSGNYKADSGAAVVLDVTNGHVLAMASYPTYNPDVWVGGIKSA
                     EYQALTAPSANSPLLSRATQGLFAPGSTFKIASTSAALMQGYSQTQNYQCPSSVTVGG
                     RVFNNDEGHASGPITLARAIELSCDTVFYQIATNFWTGDGGLRAKPGTSDPIEAMARA
                     YGLGKLTGIDLPGELPGQVGGRVFKQEFAAKYRADWCRNAVVGFPTLAKTDPARAAKL
                     QAYAKDNCASGDLFQVGDAVNLAIGQGDTAITPLQLAQAYAALANGGTIYQPQVAKAI
                     MTADGKVVRQFAPKKTGALPVSASAQAYLRAAFAGTSVAGTAAVDFTNFPLAAVGGIA
                     SKTGTAQVAGKQSTSWFATYAPANKPRYAVVMMVSQGGYGSTTSGPSVAKIYDAIFGV
                     QGQTVDPTKSVLVGGAPQTKLPKISADGTPIYPGSTPTAQAGSAAPATTAGAGLVALP
                     FFGALALLRRRRRRPAVRPVLYSGAPAPPRGRQP"
     gene            complement(5673..>6251)
                     /gene="mreD"
                     /locus_tag="VGN19_14550"
     CDS             complement(5673..>6251)
                     /gene="mreD"
                     /locus_tag="VGN19_14550"
                     /inference="COORDINATES: protein motif:HMM:TIGR03426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEV7197151.1"
                     /translation="GERRPVAEREREPLTMAFIRFLLVAVLLFTALLLQLTVLPLFNL
                     PGATPDLLLVTVAAVGVASGPVKGAGCGFVAGVALDLAPPSTGILGLSAVVLTVVGYL
                     AGELGERRDRPALNTILAVAGLAGGAVVGYAMIGGIVSDPRVDWARVPILALTSALYA
                     GVLAAFVVPGVGAMVRRLDPPDTGYELGRYDR"
BASE COUNT         1044 a         2161 c         2142 g          904 t
ORIGIN      
        1 aggtcgggcc agaccgcata cgtccgctcg gcgagggcgt ccggcctctc gttgaggacc
       61 tcgtacagga tctgcacgcc ctggttgggc accccgacct cgtaggcatc cgggtacatc
      121 aggcaccagc gcacctggac cgagtcccag tccttcacga cggcattgag ctcgccgccg
      181 acgtactgca cgggcttggt cacctgcggc agcagcggtt ccaggcgatc gaacaccgac
      241 tccacaggca tggtgcgaca gcctaccgtc cccggcgcgc gcccttctcc gttgatcatg
      301 ggcctgagtg cggttccagc gccgtagccg cacgaaaccc catgatcagc gaagacatcc
      361 gcacccatcc ccatgatcaa cgcaggacaa ccgggcccgc caggcccgag ccgggccggc
      421 cgggccttgg gtcgagtggt tggggctcat ccccaggctc ctgacccgcg ggcacgcgtc
      481 cccaggcagc tgtcggcacc tgctcccgcg gcgcgaggtc gcagttgggt tctctctcat
      541 gcggacgcta cttcttccgg aagaactggc ctgcttcacc agggaccagc tgggcctgat
      601 ctccacgagc cagtgccgtg aggtgggggg tgagcccgcg tacgatccgc tcgctccttg
      661 aacggcggga gtgtggagtc ttctgactcg cggcgtgtac gacacgatgc ccggcacacg
      721 tctcgcactg acatggctgg aacggcacca gcgagcagcg tgggccgcac tgctcgccta
      781 cggccctgac gcagttccgg tgggcacctc ggccattgcg ctgctcggtg tccagggcct
      841 acccatgcgg ataacacctg aggccgcgct gccgaacggg cggtcggcga tctcccgtga
      901 tgggctgcag cttcggcagt tcgacgccgg catggtgtgt gtccacgttg ctgggcgcct
      961 cgtggcgtcg ccggaatggg ctctggcaca agcggtccca gaactcgatc gagatcacgc
     1021 ggtcgccgtc atggactcga gccagaacct cgggctcctc gatgctgacg gactgcaacg
     1081 cgcccacgac ctggctcggc atcgacgcgg agtcgaccgt acgcacggct ggtgggccca
     1141 gtccgacgcg cgggccgagt ccgcgctgga gaccttcgga cgcctggact gcgtcgatgg
     1201 tgcggtccct cctgacgacc tgcaggtacc gatcaccacc atcgacgggc ggtttctagg
     1261 gaggggcgac atggggtggc gccaacgcaa cgggcgttgg ctgattgccg agctggacgg
     1321 tcgcgaggtc cacgagctgc ccaccgcact gctgcacgac cggcaccgcc agaacggttt
     1381 cctcatcgac ggcgacgccg atgtcctgcg gttcacctac cgcgacctca ggccgcgcgg
     1441 cgccatcgcc cgtacggtcc tgcgtcgcct agccggctga gcccaggcga catcaccccg
     1501 caccaccaga gcaacgcacc cggtcccacc gacagccgct gccctgccga cccgccgagg
     1561 cttcgttgat catgggcgag agtgcggttc cagccccgca accgcacaaa aacccatgat
     1621 cagcagggga aaccgcacac aagcccatga tcaaccagtc gggaacgagt cccgggggga
     1681 acccggcgca ggaaccgggc gcgggtcgaa gcccccgagc gaagcgaggt gcggcggccc
     1741 cgagcgaagc gaggtgcggc ggcgagtggc ggggcgaagc cctgcccgag ccgtcgcagg
     1801 cggagaccct tgcgcccgaa taaacagccc cacccgagct caccgctggc ggagaccctt
     1861 gcgcccgaag aaccggggag aaccgggcgc gggtcgaagc ccccgagcga agcgaggagc
     1921 ggtggccgag ggtggggcga agccccaccc gagtccaccg ctggcggaga cccttgcgcc
     1981 cgaaagtttg gtcagtcctg ggagcgcagg tggacgttct ggagcaggcc gatggcgatc
     2041 caggaggcga acatggaggt gccgccgtac gacaggaacg ggagcgggac gcccgtcacc
     2101 ggcatgatgc ccaggttcat cccgatgttc tcgaaagcct ggaacgagag ccagcacagg
     2161 atgcccacgg cgacgagccg gccgaacatg tcggtggccc gcgaggcgat ccggatgcca
     2221 cgccacagga cgaccccgaa gagcaagatg atgccggccc caccgacgaa cccgagctcc
     2281 tcccccgcga ccgagtagac gaagtcggtc tggttgtacg gcacgaagtg gcgctgggtc
     2341 tgggccccgt ggaaaagtcc ctcgccggtc agcccgccgg accctatggc gatgcgcgcc
     2401 tgctgggtgt tgtagccgta agtcgagccg ccgccgctgg gatcggcgaa ggctgtcagc
     2461 cgttgcacct ggtacggctt cagcaccccc agctgcaccg ccccgaaggc cacgacgacg
     2521 acggacagca gcagcccgac caccagccgg gtcttcgccc cggagaccgc gatcatgccg
     2581 aacaccgcga cgcccatgat cagcgcagtg cccaggtccg gctggatcag caccagcgcc
     2641 gccggcacgg cgaagagcgc gagcacctgc aggatgtcgc gggtggcagg ctcggactcg
     2701 ccgtcgcgtc gttcggacag cagcgaggcc acgacgagga tcagcccgag cttggtgaac
     2761 tcggccggct ggatgctgaa cccggccggc agctcgatcc atgccttcgt accgttcacc
     2821 gtcgagccga tcggtgacaa caccacgatc aggccgagga cggaaacacc gaaaagaacg
     2881 ggtgcgtacg cccgcagcag ccgatagtcg atgcgggaga acaggaaccc gaggacgagc
     2941 ccgatcacca ggtttatcag gtgacgcttg aagaaagtct gcgggtcgtt gccgaagctc
     3001 tccagcttcg tccgggtcgc cgaccagatg cagaacgccc cgatgaccga gagtgccacg
     3061 gcggacagca gcaggatcca gtcgagccgg cgcagatacg acgagccgcc gacgattctc
     3121 gacacgaccc ctgagcccgc cgggcgcttg acagtggtgg ggtagccgta cgtcatggct
     3181 gcctacctct cggcggcgcc ggtgcgccgg agtacaggac cgggcgcacc gcaggccggc
     3241 ggcgccggcg gcgcagcagg gccagcgcgc cgaagaacgg caacgccacc agacccgctc
     3301 ccgccgtcgt ggccggggcc gcgctgccgg cctgggctgt cggcgtcgag ccggggtaga
     3361 tcggagtccc atcagcggag atcttgggca gcttcgtctg gggtgccccg cccaccagca
     3421 ccgacttcgt cgggtccacc gtctggccct gcacgccgaa gatcgcgtcg tagatcttcg
     3481 ccacgctcgg tccggaggtc gtggagccgt acccaccctg cgacaccatc atcacgacgg
     3541 cgtacctggg tttgttggcg ggtgcgtacg tcgcgaacca cgaggtcgac tgcttgcccg
     3601 caacctgggc ggtgccggtc ttgctggcga tgccgccgac cgcggccagg gggaagttgg
     3661 tgaagtcgac ggcagccgtc ccggccaccg aggtgcccgc gaaggcagcg cgaaggtagg
     3721 cctgcgccga ggccgagacc ggcagggccc ccgtcttctt cggcgcgaac tgccgcacca
     3781 ccttgccgtc ggccgtcatg atcgccttgg cgacctgcgg ctggtagatc gtcccgccgt
     3841 tcgcgagcgc ggcgtatgcc tgcgccagct gcagcggggt gatcgccgtg tcgccctgac
     3901 cgatcgcgag gttgacggcg tcaccgacct ggaagaggtc ccctgacgcg cagttgtcct
     3961 tcgcgtacgc ctgcagcttc gccgcccgtg ccggatcggt cttggcgagg gtcgggaagc
     4021 ccacgactgc gttgcggcac cagtcggccc ggtacttcgc ggcgaactcc tgcttgaaca
     4081 cccgaccccc gacctgaccg ggcagctcac cgggcaggtc gatgccggtg agcttgccca
     4141 acccgtacgc ccgagccatg gcctcgatcg ggtccgacgt gccgggcttg gcgcgcaagc
     4201 ccccgtcgcc agtccagaag ttcgtcgcga tctggtagaa gacggtgtcg caggacagct
     4261 caatcgccct cgcaagggtg atgggaccgc tcgcgtgacc ctcgtcgttg ttgaagaccc
     4321 ggccacctac tgtgacgctg gacgggcact gatagttctg ggtctgggag taaccctgca
     4381 tgagtgctgc ggaggtgctt gcgatcttga atgtcgatcc cggtgcgaac agaccctggg
     4441 tcgcgcgcga cagcagcggt gagttggccg agggagccgt gagtgcctgg tattccgcac
     4501 tcttgattcc gcccacccac acgtccgggt tgtacgtcgg atacgacgcc atcgcgagca
     4561 cgtgcccgtt cgtcacgtcg agcacgacgg cggctccgga gtcggccttg tagttccctg
     4621 agccgacctt ggcctgcgtg gcccgggctc ggtcgatcgc agccttgagc tgctgttcga
     4681 cgaccgcctg cagccgggcg tcgatgttgg tcaccacgtc gtcgcctggc gtcggcgcgg
     4741 tctgcgacac cgtgcctgtc acattggccg ccacgtcgac ggcgagctcc ttgacgccgt
     4801 cggtgccgcg caagtacgag ttgtactgct gctcgagccc accccggccg accaggtcgg
     4861 aggctgtgag ggtggcctga gccgcgggca gcttgccatc ggcgaccgcc tgggcctgag
     4921 cgtcgagctc ctcctgactc accgcgccga ggtagcccag cgtctgggcg gcgttgacgc
     4981 cgtagagcga cgggtagtcg cgaaggtcct cgagctcggc cacgacgccg gggaagctgg
     5041 cccgccgttc catgatcgac agcgcgaggt tggtggtgac gtccttcgcg accgggatcg
     5101 gctggaacgg cgagccgttc cagcagactc cccgcaccgc acccttggtg ccacagagct
     5161 ggatcttctc gtcgaggatc tggtacgtcg tccccagcgc cttcgccagc cgcgtgagca
     5221 cggccttgcc atggtccttc tgcgagctga tctcggcccg gtccagcgac accaccaacg
     5281 acgtgcggtt cgcgacgagc gggcgcccgg cctggtcgag gatcagcccg cggggcgccg
     5341 gggtgatgac gttccggacg ttgttggtcg aggactgctg gcggtacgca tccgcattga
     5401 tcacctgcag gaagaacagt cggccgacga gggtggcgac gagggagaac agcagcgccc
     5461 cgaggacgac cagccgcaga gtggagcgtt cggtcacgac gaggttcctc tctgtccgaa
     5521 gcggagctgt ctgaagcgaa gctgtcccaa gcgggtctgg cccgaatggg ccgaagggcc
     5581 accttgcccg ttgacccatg ccgtcggacg gaccgcgtgg atgtggggtt ccgcgaccgg
     5641 acgtgacgta cgaccgatcc ggggccacac gatcaccggt cgtaccgccc tagctcgtag
     5701 ccggtgtcgg gcggatcgag ccggcggacc atggccccga cgccgggtac gacgaaagcg
     5761 gccaggacac cagcgtacag agcagaagtc agtgccagga tcggtactcg cgcccagtcg
     5821 acccgcggat cggagacgat cccgccgatc atcgcgtagc ccaccacagc ccccccggcc
     5881 aggcccgcga ccgcgaggat cgtgttcagc gcaggtcggt cgcgccgctc gccgagctcc
     5941 cctgccaggt agccgaccac cgtcagcacg accgcggaga gccccaggat gccggtcgag
     6001 ggcggcgcga ggtccagggc cactccggcg acgaagccgc acccggcgcc cttgacgggc
     6061 ccgcttgcca ccccgacggc ggcgaccgtg acgagcagca ggtccggggt ggccccgggc
     6121 aggttgaaca gcggtagcac cgtcagctgc agcagcaggg cggtgaagag caggacggcg
     6181 accagcagga accggatgaa cgccatcgtc aagggctcgc gctcacgctc ggcgacggga
     6241 cgacgctccc c
//
LOCUS       DASYFY010000719         2056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pedococcus sp. isolate SMAG_U4198 k141_840897, whole
            genome shotgun sequence.
ACCESSION   DASYFY010000719 DASYFY010000000
VERSION     DASYFY010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37958297
            Sequence Read Archive: SRR11674058
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pedococcus sp. (soil metagenome)
  ORGANISM  Pedococcus sp.
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Intrasporangiaceae; Pedococcus.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 13:27:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,913
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,858
            CDSs (with protein)               :: 2,858
            Genes (RNA)                       :: 34
            tRNAs                             :: 29
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Pedococcus sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840897"
                     /isolate="SMAG_U4198"
                     /isolation_source="soil"
                     /db_xref="taxon:2860345"
                     /environmental_sample
                     /country="United Kingdom: Aberdeen, Scotland"
                     /lat_lon="57.1866 N 2.2146 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(262..831)
                     /locus_tag="VGN19_14555"
     CDS             complement(262..831)
                     /locus_tag="VGN19_14555"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEV7197152.1"
                     /translation="MVRSPRFSGWNRIQLGALVATARASTPDDAALITMLGLLGLRIS
                     EACHANIEDMGTARGHRTLHIIGKGNKPALVPLPVPVARTLDQAANDRASGPPMRTRS
                     GARMDRNAATRIVHRLAKRAGIEHRVGCHALRHAFITAALDAGLALRDVQIAARHADP
                     RTTTRYDRARGNLDRHANYIVAAFIAGAA"
     gene            complement(1052..1123)
                     /locus_tag="VGN19_14560"
     tRNA            complement(1052..1123)
                     /locus_tag="VGN19_14560"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1088..1090),aa:Arg,seq:ccg)
     gene            1264..>2056
                     /gene="argS"
                     /locus_tag="VGN19_14565"
     CDS             1264..>2056
                     /gene="argS"
                     /locus_tag="VGN19_14565"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF015450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEV7197153.1"
                     /translation="MTPDQLAAALRHCVVEAVESGELELASHQVPPSLVVERPKNPEH
                     GDYASNVALQLAKAAGVSPRTVAEVVAARLRDVPGVSAVDIAGPGFLNITLEAASLGE
                     TARSVVTAGDRYGQVDTFAGQNINVEFISANPTGPLHLGHTRWAAVGDAIARVFEAAG
                     ASVAREFYVNDRGVQMDKFGQSIEARALGTQVPEGGYQGEYVEDLARQIVAADPGVVD
                     LPDPERWERFREAGYSLQLQQQKDTLDHFNTHFDVWYSERTLHSSG"
BASE COUNT          312 a          694 c          729 g          321 t
ORIGIN      
        1 cgcgagtgct tgcctcgccc gaacgaaaga cgcccaaggc tctccctcat cgggcggcga
       61 ctcaggcggc cactgatcga gtgggaggtc tccgagcagg aggggttgga gggcgctggc
      121 agccgaatcc ccaccattgt cggcccgcgt ttcggccttt cgccgtccga acaatggcac
      181 cctgactcac ctgtccctcg tcgtggatcg cagccgcaca tactgccgga tatttctcgc
      241 ccgtgtcgtc acccggacgg tctaggcagc tccggcgatg aaggcggcga cgatgtagtt
      301 cgcgtggcgg tcgaggttcc ctcgggcgcg gtcgtagcgg gttgtggtcc gtggatcggc
      361 gtggcgggcg gcgatctgaa cgtcgcgcaa ggcgaggccg gcgtcgaggg cagcggtgat
      421 gaaggcgtga cgcagggcat ggcagccaac ccggtgctcg atcccagcgc gcttggccag
      481 gcggtggacg atccgggtcg cggcgttgcg gtccatcctg gcgccactgc gggtgcgcat
      541 cggcggcccg ctagcgcggt cgttggcggc ctggtccagc gtcctggcga ccggcacggg
      601 cagcgggacg agcgcgggct tgttgccctt gccgatgatg tgcagggtgc gatgcccccg
      661 cgcggtgccc atgtcctcga tgttggcgtg gcacgcctcg ctgatgcgta gcccgagcag
      721 ccctagcatc gtgatcaggg ccgcatcgtc cggggtggat gcccgggccg tcgcgaccag
      781 ggcaccgagc tggatccggt tccagcccga gaacctggga ctcctgacca gctgggcccg
      841 gacctggtgg acgccgccat cgtcaccacc ggccgggaca cgtacggtcg cgcgagcggc
      901 aacatcgccg tcatctcggt cgcgctgctc gggccttgat gcccacgtac atggtcacgc
      961 cgtggaagcc gcctggatcc cgaggcggca cgacatgtgg cacgagatgc gggggtcgct
     1021 gaaagccgtt ggtattgctg aagaacgaat gtgcccccgg caggattcga acctgcgctt
     1081 gtgcctccgg agggcaccgc tctatcccct gagctacggg ggcccaggag ccatgacctt
     1141 agcaaaccgc gagcgggcgc cagccgaccc cggacccctg ctggcgaccg gctcgatcgc
     1201 ccgggcggaa agcacgcggg acaggcgtac ggaggtggtc tacgccgtcc ctagactcgg
     1261 cgcatgacgc cggaccagct cgccgcagct ctgcgccact gcgtcgtaga ggctgtcgag
     1321 tccggcgagc tggagctggc ctcccaccag gtgccgccct ccctggtcgt ggagcggccc
     1381 aagaaccccg agcacggcga ctacgcatcg aacgtcgccc tgcagctggc caaggcagcc
     1441 ggggtgagcc ctcgcacggt ggccgaggtg gtggcagcgc ggctccgtga cgtccccggt
     1501 gtctccgccg tggacatcgc aggtcccggc tttctcaaca tcaccctcga ggcggcgagc
     1561 ctgggcgaga cggctcgctc ggtcgtgacg gccggtgacc ggtacgggca ggtcgacacg
     1621 ttcgccgggc agaacatcaa cgtcgagttc atctcggcga acccgaccgg cccgctgcac
     1681 ctgggccaca ctcgctgggc agcggtcggc gacgcgatcg cgcgagtctt cgaagcggcc
     1741 ggcgcgagcg tcgctaggga gttctacgtc aacgatcgtg gcgtgcagat ggacaagttc
     1801 gggcagtcca tcgaggcgag ggcgctcggg acccaggtcc ccgagggcgg ctatcagggc
     1861 gagtacgtcg aggaccttgc ccggcagatc gtcgcggctg atcccggagt ggtcgacctg
     1921 ccggacccgg agcgctggga gcggttccgg gaagcgggct actcccttca gctccagcag
     1981 cagaaggaca ctctcgacca cttcaacacc cacttcgacg tctggtactc cgaacgcacc
     2041 ctgcactcct ccggtg
//
